Query 004679
Match_columns 737
No_of_seqs 361 out of 2677
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 6.4E-62 1.4E-66 485.0 39.4 712 1-736 1-732 (758)
2 KOG0271 Notchless-like WD40 re 100.0 7.1E-48 1.5E-52 369.4 25.9 330 44-697 109-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.1E-44 2.4E-49 347.5 19.8 355 84-729 107-467 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-43 5.7E-48 342.8 24.0 211 41-310 166-376 (459)
5 KOG0286 G-protein beta subunit 100.0 3.8E-39 8.3E-44 299.7 31.3 218 40-312 45-262 (343)
6 KOG0315 G-protein beta subunit 100.0 1.4E-38 2.9E-43 289.4 30.5 188 63-310 11-198 (311)
7 KOG0319 WD40-repeat-containing 100.0 8E-39 1.7E-43 331.6 28.8 400 28-714 84-592 (775)
8 KOG0293 WD40 repeat-containing 100.0 1.4E-37 3E-42 301.4 25.2 209 41-310 215-426 (519)
9 KOG0282 mRNA splicing factor [ 100.0 1.1E-37 2.4E-42 308.8 20.5 248 2-310 167-416 (503)
10 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-36 2.5E-41 296.6 21.1 261 90-715 172-434 (459)
11 KOG0306 WD40-repeat-containing 100.0 1.4E-35 3E-40 307.5 26.5 469 24-706 83-671 (888)
12 KOG0318 WD40 repeat stress pro 100.0 1.9E-35 4.1E-40 295.3 26.3 256 20-314 73-355 (603)
13 KOG0319 WD40-repeat-containing 100.0 2.2E-36 4.8E-41 313.5 20.1 211 49-318 61-277 (775)
14 KOG0265 U5 snRNP-specific prot 100.0 1.4E-34 3.1E-39 270.4 27.9 209 41-310 38-247 (338)
15 KOG0315 G-protein beta subunit 100.0 3.1E-34 6.8E-39 261.0 28.6 234 19-310 11-246 (311)
16 KOG0279 G protein beta subunit 100.0 4.9E-34 1.1E-38 264.3 30.0 214 40-312 5-225 (315)
17 KOG0284 Polyadenylation factor 100.0 2.5E-35 5.4E-40 285.9 18.8 199 50-310 96-295 (464)
18 KOG0295 WD40 repeat-containing 100.0 6.4E-34 1.4E-38 272.5 24.7 217 35-311 93-324 (406)
19 KOG0318 WD40 repeat stress pro 100.0 2.2E-32 4.7E-37 273.4 35.3 280 24-335 166-501 (603)
20 KOG0263 Transcription initiati 100.0 2E-34 4.3E-39 302.7 21.1 197 43-311 371-567 (707)
21 KOG0316 Conserved WD40 repeat- 100.0 8.2E-33 1.8E-37 249.7 26.3 207 42-311 9-215 (307)
22 KOG0266 WD40 repeat-containing 100.0 2.2E-32 4.8E-37 296.7 31.4 212 43-312 151-367 (456)
23 KOG0645 WD40 repeat protein [G 100.0 5.8E-32 1.3E-36 249.5 28.9 219 40-310 4-226 (312)
24 KOG0296 Angio-associated migra 100.0 4.7E-32 1E-36 259.9 29.4 212 42-313 56-267 (399)
25 cd00200 WD40 WD40 domain, foun 100.0 2.7E-31 5.9E-36 272.4 34.6 207 43-310 2-208 (289)
26 KOG0285 Pleiotropic regulator 100.0 4.8E-32 1E-36 258.6 24.2 210 40-311 141-350 (460)
27 KOG0273 Beta-transducin family 100.0 1.9E-31 4.1E-36 263.5 29.0 228 44-334 173-414 (524)
28 PLN00181 protein SPA1-RELATED; 100.0 9E-31 2E-35 305.7 37.1 204 46-310 479-691 (793)
29 KOG0313 Microtubule binding pr 100.0 3.8E-31 8.2E-36 254.9 26.4 263 8-311 67-332 (423)
30 KOG0286 G-protein beta subunit 100.0 9.7E-31 2.1E-35 243.8 28.2 268 86-715 49-319 (343)
31 KOG0278 Serine/threonine kinas 100.0 8E-32 1.7E-36 245.3 18.9 205 44-311 8-215 (334)
32 KOG0306 WD40-repeat-containing 100.0 3.7E-31 8.1E-36 274.7 26.2 472 26-715 41-638 (888)
33 KOG0279 G protein beta subunit 100.0 2E-30 4.4E-35 240.4 25.5 231 18-311 28-264 (315)
34 KOG0281 Beta-TrCP (transducin 100.0 9.4E-32 2E-36 255.4 16.6 194 50-311 197-390 (499)
35 KOG1446 Histone H3 (Lys4) meth 100.0 3.2E-29 7E-34 237.4 32.9 214 38-311 2-219 (311)
36 KOG0276 Vesicle coat complex C 100.0 1.6E-30 3.4E-35 264.7 24.8 212 40-310 3-216 (794)
37 KOG0291 WD40-repeat-containing 100.0 5.5E-30 1.2E-34 266.2 28.6 398 37-708 132-559 (893)
38 KOG0295 WD40 repeat-containing 100.0 2.2E-30 4.7E-35 248.4 21.8 188 85-332 101-288 (406)
39 KOG0268 Sof1-like rRNA process 100.0 2.9E-31 6.2E-36 254.0 15.3 235 4-310 24-260 (433)
40 KOG0263 Transcription initiati 100.0 1.3E-30 2.9E-35 274.0 20.9 212 40-312 441-652 (707)
41 KOG0291 WD40-repeat-containing 100.0 1.9E-28 4E-33 254.9 35.9 363 48-708 53-431 (893)
42 KOG0292 Vesicle coat complex C 100.0 6.4E-30 1.4E-34 269.4 25.3 225 45-310 4-237 (1202)
43 KOG0284 Polyadenylation factor 100.0 8.6E-31 1.9E-35 254.5 15.1 160 92-312 95-255 (464)
44 KOG0265 U5 snRNP-specific prot 100.0 2.8E-29 6E-34 235.1 23.1 162 90-310 44-205 (338)
45 KOG0277 Peroxisomal targeting 100.0 6.2E-29 1.4E-33 227.3 21.4 202 54-311 12-223 (311)
46 KOG0640 mRNA cleavage stimulat 100.0 1.2E-28 2.6E-33 231.1 22.9 216 44-313 106-339 (430)
47 KOG1408 WD40 repeat protein [F 100.0 4E-29 8.6E-34 257.5 20.1 574 37-700 65-714 (1080)
48 KOG0276 Vesicle coat complex C 100.0 1.2E-28 2.5E-33 251.2 22.8 255 26-340 33-288 (794)
49 KOG0275 Conserved WD40 repeat- 100.0 9.1E-29 2E-33 232.9 18.6 205 48-310 211-424 (508)
50 KOG1407 WD40 repeat protein [F 100.0 2E-27 4.4E-32 218.3 26.4 206 44-310 14-220 (313)
51 KOG0288 WD40 repeat protein Ti 100.0 7.8E-29 1.7E-33 241.3 17.3 205 43-312 168-374 (459)
52 KOG0283 WD40 repeat-containing 100.0 2.2E-28 4.8E-33 259.6 22.2 212 44-310 260-533 (712)
53 KOG1334 WD40 repeat protein [G 100.0 7.2E-29 1.6E-33 246.3 17.2 262 13-309 105-366 (559)
54 KOG0285 Pleiotropic regulator 100.0 3E-28 6.5E-33 232.7 20.2 163 90-312 148-310 (460)
55 KOG1539 WD repeat protein [Gen 100.0 4.7E-27 1E-31 247.4 29.9 257 26-311 222-525 (910)
56 KOG1063 RNA polymerase II elon 100.0 2.2E-27 4.7E-32 245.1 26.2 289 24-335 30-375 (764)
57 KOG0281 Beta-TrCP (transducin 100.0 1.2E-28 2.7E-33 234.2 14.8 220 22-311 211-430 (499)
58 PLN00181 protein SPA1-RELATED; 100.0 1.9E-26 4.1E-31 269.5 34.9 188 71-310 457-649 (793)
59 KOG0273 Beta-transducin family 100.0 2.9E-27 6.3E-32 234.0 22.9 253 22-339 251-511 (524)
60 KOG0292 Vesicle coat complex C 100.0 1.3E-27 2.7E-32 252.2 21.5 162 90-311 6-167 (1202)
61 KOG0266 WD40 repeat-containing 100.0 8.1E-27 1.7E-31 253.3 28.2 165 91-312 157-321 (456)
62 KOG0772 Uncharacterized conser 100.0 7E-27 1.5E-31 233.3 23.9 234 41-312 158-397 (641)
63 KOG0645 WD40 repeat protein [G 100.0 3.4E-26 7.3E-31 211.5 25.8 230 20-310 29-262 (312)
64 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.1E-31 248.3 28.9 195 49-311 207-402 (537)
65 KOG0316 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 210.1 20.9 256 24-342 35-291 (307)
66 KOG0296 Angio-associated migra 99.9 5.7E-26 1.2E-30 218.3 23.8 245 17-312 75-319 (399)
67 KOG0643 Translation initiation 99.9 5.4E-25 1.2E-29 203.0 26.8 239 45-338 5-248 (327)
68 cd00200 WD40 WD40 domain, foun 99.9 3.7E-25 8.1E-30 226.7 29.0 164 86-310 3-166 (289)
69 KOG0641 WD40 repeat protein [G 99.9 8.9E-24 1.9E-28 189.9 33.1 223 39-311 22-263 (350)
70 KOG0973 Histone transcription 99.9 9.6E-26 2.1E-30 245.5 24.8 242 46-332 8-276 (942)
71 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.9E-30 223.8 23.3 200 50-312 26-228 (487)
72 KOG0305 Anaphase promoting com 99.9 5.9E-25 1.3E-29 228.3 29.1 194 55-312 182-379 (484)
73 KOG0277 Peroxisomal targeting 99.9 1.8E-26 3.8E-31 211.3 15.5 228 24-308 79-308 (311)
74 KOG1273 WD40 repeat protein [G 99.9 1.4E-24 2.9E-29 204.7 24.3 202 53-310 26-227 (405)
75 PTZ00421 coronin; Provisional 99.9 2.1E-24 4.7E-29 233.1 29.3 230 44-332 69-314 (493)
76 KOG0294 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 204.4 24.3 208 38-310 31-238 (362)
77 PTZ00421 coronin; Provisional 99.9 6.1E-24 1.3E-28 229.6 32.2 210 51-311 21-247 (493)
78 KOG0321 WD40 repeat-containing 99.9 7.5E-25 1.6E-29 224.4 23.5 230 55-311 54-303 (720)
79 KOG1539 WD repeat protein [Gen 99.9 1.5E-24 3.2E-29 228.7 25.8 253 25-312 179-481 (910)
80 KOG0282 mRNA splicing factor [ 99.9 2.1E-25 4.5E-30 222.0 17.7 265 14-334 223-487 (503)
81 KOG0278 Serine/threonine kinas 99.9 5.4E-26 1.2E-30 207.4 11.9 243 4-312 15-257 (334)
82 KOG0283 WD40 repeat-containing 99.9 1.3E-24 2.9E-29 231.0 24.0 174 86-311 260-483 (712)
83 PTZ00420 coronin; Provisional 99.9 7.9E-24 1.7E-28 229.4 30.1 250 23-333 49-318 (568)
84 KOG1407 WD40 repeat protein [F 99.9 2.5E-24 5.3E-29 198.1 20.5 162 90-310 17-178 (313)
85 KOG0289 mRNA splicing factor [ 99.9 1E-23 2.3E-28 206.8 26.0 202 51-311 220-421 (506)
86 KOG0301 Phospholipase A2-activ 99.9 1.8E-23 3.9E-28 216.5 28.9 203 39-309 3-208 (745)
87 KOG0305 Anaphase promoting com 99.9 3.3E-24 7.2E-29 222.7 23.6 219 28-310 197-420 (484)
88 KOG0293 WD40 repeat-containing 99.9 1.7E-24 3.6E-29 210.9 19.5 165 90-310 221-385 (519)
89 KOG1036 Mitotic spindle checkp 99.9 4E-23 8.7E-28 195.0 27.9 197 49-310 12-208 (323)
90 KOG0300 WD40 repeat-containing 99.9 6E-24 1.3E-28 200.1 21.6 224 38-312 136-389 (481)
91 KOG0274 Cdc4 and related F-box 99.9 1.5E-23 3.4E-28 226.5 27.0 221 23-312 223-444 (537)
92 KOG0264 Nucleosome remodeling 99.9 1.6E-23 3.4E-28 207.7 23.8 184 90-311 121-305 (422)
93 KOG0275 Conserved WD40 repeat- 99.9 2E-24 4.2E-29 203.8 16.0 262 21-337 228-495 (508)
94 KOG0647 mRNA export protein (c 99.9 9.8E-24 2.1E-28 198.2 20.5 269 48-341 25-313 (347)
95 PTZ00420 coronin; Provisional 99.9 1.4E-22 3E-27 219.8 32.5 192 68-310 50-249 (568)
96 KOG0288 WD40 repeat protein Ti 99.9 1.6E-24 3.5E-29 211.3 15.3 271 10-341 179-451 (459)
97 KOG0264 Nucleosome remodeling 99.9 1.1E-23 2.4E-28 208.8 20.4 250 20-310 139-405 (422)
98 KOG0313 Microtubule binding pr 99.9 1.6E-23 3.4E-28 202.5 20.8 258 23-310 120-419 (423)
99 KOG2445 Nuclear pore complex c 99.9 8.9E-23 1.9E-27 192.1 24.9 193 86-310 6-208 (361)
100 KOG0289 mRNA splicing factor [ 99.9 5.7E-23 1.2E-27 201.7 23.3 227 24-310 237-463 (506)
101 KOG1332 Vesicle coat complex C 99.9 2.8E-23 6E-28 189.4 19.4 175 86-310 4-194 (299)
102 KOG0643 Translation initiation 99.9 6E-23 1.3E-27 189.5 21.2 249 26-310 30-318 (327)
103 KOG4283 Transcription-coupled 99.9 1.5E-22 3.3E-27 189.1 24.0 224 45-312 38-279 (397)
104 KOG2106 Uncharacterized conser 99.9 2.5E-22 5.4E-27 200.5 26.4 209 42-307 96-314 (626)
105 KOG0310 Conserved WD40 repeat- 99.9 1.7E-23 3.6E-28 208.9 18.0 253 28-342 48-300 (487)
106 KOG0650 WD40 repeat nucleolar 99.9 2.3E-22 5.1E-27 204.6 26.6 216 44-311 394-639 (733)
107 KOG1446 Histone H3 (Lys4) meth 99.9 2.1E-21 4.5E-26 184.5 29.5 165 84-311 6-172 (311)
108 KOG0299 U3 snoRNP-associated p 99.9 4.4E-22 9.6E-27 197.2 25.3 208 43-312 135-359 (479)
109 KOG1445 Tumor-specific antigen 99.9 2.4E-21 5.3E-26 197.9 30.5 231 24-312 54-296 (1012)
110 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 201.0 20.6 233 23-310 13-248 (476)
111 KOG0294 WD40 repeat-containing 99.9 1.4E-21 3E-26 184.8 24.8 162 85-310 36-198 (362)
112 KOG0640 mRNA cleavage stimulat 99.9 4.2E-23 9.1E-28 194.1 14.5 140 141-311 106-248 (430)
113 KOG0308 Conserved WD40 repeat- 99.9 1.8E-22 3.8E-27 207.6 20.2 215 48-310 19-244 (735)
114 KOG4227 WD40 repeat protein [G 99.9 4.9E-22 1.1E-26 192.2 21.5 250 12-310 20-275 (609)
115 KOG0772 Uncharacterized conser 99.9 1.5E-22 3.2E-27 202.6 18.0 275 23-344 184-480 (641)
116 KOG1063 RNA polymerase II elon 99.9 4E-22 8.8E-27 206.4 21.7 297 16-338 157-589 (764)
117 KOG0268 Sof1-like rRNA process 99.9 1.2E-22 2.7E-27 195.1 15.6 223 21-311 82-304 (433)
118 KOG1332 Vesicle coat complex C 99.9 5.8E-22 1.3E-26 180.8 19.0 241 21-310 26-287 (299)
119 KOG2106 Uncharacterized conser 99.9 9.7E-21 2.1E-25 189.3 29.2 282 26-353 178-479 (626)
120 KOG0299 U3 snoRNP-associated p 99.9 1E-21 2.2E-26 194.7 20.4 237 47-334 199-438 (479)
121 KOG2096 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 177.9 26.3 223 44-310 80-309 (420)
122 KOG0639 Transducin-like enhanc 99.9 1.3E-21 2.9E-26 194.9 20.1 209 41-310 411-623 (705)
123 KOG0269 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 204.8 20.9 207 51-311 40-252 (839)
124 KOG0647 mRNA export protein (c 99.9 5.4E-21 1.2E-25 179.8 22.1 163 90-312 24-187 (347)
125 KOG4328 WD40 protein [Function 99.9 1.5E-20 3.4E-25 186.1 26.0 217 41-309 177-399 (498)
126 KOG0646 WD40 repeat protein [G 99.9 2.5E-21 5.3E-26 192.4 20.2 253 50-338 81-336 (476)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-20 1.2E-24 191.0 31.6 187 62-312 1-190 (300)
128 KOG0321 WD40 repeat-containing 99.9 9.6E-21 2.1E-25 194.6 22.1 267 8-311 54-349 (720)
129 KOG0269 WD40 repeat-containing 99.9 9.8E-22 2.1E-26 206.1 14.8 223 52-331 89-319 (839)
130 KOG0308 Conserved WD40 repeat- 99.9 2.4E-21 5.2E-26 199.3 16.2 259 23-332 42-308 (735)
131 KOG0973 Histone transcription 99.9 1.5E-20 3.2E-25 205.4 23.1 238 41-312 60-358 (942)
132 KOG2048 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 187.3 28.4 246 49-347 24-271 (691)
133 KOG2055 WD40 repeat protein [G 99.9 7.6E-20 1.6E-24 181.4 24.4 203 49-310 212-418 (514)
134 KOG0641 WD40 repeat protein [G 99.9 3.5E-19 7.5E-24 160.5 26.3 211 47-310 86-304 (350)
135 KOG1274 WD40 repeat protein [G 99.9 2.2E-19 4.7E-24 192.2 28.3 209 48-311 11-220 (933)
136 KOG0300 WD40 repeat-containing 99.9 1.7E-20 3.6E-25 177.0 17.0 247 21-332 163-455 (481)
137 KOG2919 Guanine nucleotide-bin 99.9 1E-19 2.2E-24 172.7 21.8 208 53-311 52-283 (406)
138 KOG0267 Microtubule severing p 99.9 1.1E-21 2.4E-26 204.0 9.1 219 19-300 41-259 (825)
139 KOG1036 Mitotic spindle checkp 99.8 1.3E-19 2.7E-24 171.5 21.0 265 24-342 31-295 (323)
140 KOG0302 Ribosome Assembly prot 99.8 4.4E-20 9.5E-25 178.5 18.1 220 42-312 143-381 (440)
141 KOG0270 WD40 repeat-containing 99.8 2.6E-20 5.6E-25 184.0 16.1 215 47-316 240-456 (463)
142 KOG0302 Ribosome Assembly prot 99.8 3.7E-20 8.1E-25 179.0 16.5 229 38-302 199-432 (440)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.2E-18 6.9E-23 177.7 31.3 229 23-311 6-239 (300)
144 KOG2445 Nuclear pore complex c 99.8 1.5E-18 3.2E-23 163.9 25.2 261 47-311 10-320 (361)
145 KOG0267 Microtubule severing p 99.8 5.6E-21 1.2E-25 198.9 9.3 238 44-342 22-259 (825)
146 KOG0322 G-protein beta subunit 99.8 1.2E-19 2.5E-24 167.7 16.5 230 40-310 4-236 (323)
147 KOG1408 WD40 repeat protein [F 99.8 1.8E-19 4E-24 186.7 17.8 249 50-347 459-709 (1080)
148 KOG4283 Transcription-coupled 99.8 2.5E-18 5.4E-23 161.1 23.6 284 22-345 60-359 (397)
149 KOG4378 Nuclear protein COP1 [ 99.8 2.7E-19 5.9E-24 178.5 17.0 252 21-333 50-305 (673)
150 KOG0301 Phospholipase A2-activ 99.8 8.5E-19 1.9E-23 182.1 19.6 240 23-333 30-271 (745)
151 KOG1009 Chromatin assembly com 99.8 1E-17 2.3E-22 164.0 22.8 214 50-299 13-250 (434)
152 KOG2096 WD40 repeat protein [G 99.8 4.3E-17 9.2E-22 154.6 23.0 177 90-310 83-259 (420)
153 KOG0642 Cell-cycle nuclear pro 99.8 5.9E-18 1.3E-22 172.3 18.3 233 36-311 280-521 (577)
154 KOG0307 Vesicle coat complex C 99.8 1.8E-18 3.9E-23 189.9 15.2 272 20-346 31-322 (1049)
155 KOG1188 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 155.6 23.4 199 63-312 41-245 (376)
156 KOG1034 Transcriptional repres 99.8 3.4E-17 7.4E-22 156.1 21.1 226 46-308 34-278 (385)
157 KOG0307 Vesicle coat complex C 99.8 1.4E-18 3.1E-23 190.7 12.0 233 24-312 86-330 (1049)
158 KOG0639 Transducin-like enhanc 99.8 4.9E-18 1.1E-22 169.7 13.6 231 14-308 467-703 (705)
159 KOG1273 WD40 repeat protein [G 99.8 3.9E-17 8.4E-22 154.7 18.8 270 22-339 39-311 (405)
160 KOG1034 Transcriptional repres 99.8 1.6E-17 3.5E-22 158.2 15.8 249 24-309 111-383 (385)
161 KOG1274 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 171.9 23.9 259 24-340 31-289 (933)
162 KOG2048 WD40 repeat protein [G 99.8 2E-16 4.3E-21 164.5 25.0 164 91-312 23-187 (691)
163 KOG0270 WD40 repeat-containing 99.8 2.5E-17 5.4E-22 163.1 16.7 204 12-251 250-454 (463)
164 KOG4328 WD40 protein [Function 99.7 5.5E-17 1.2E-21 161.2 18.3 267 24-339 206-482 (498)
165 KOG1963 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 160.8 32.5 239 27-313 36-379 (792)
166 KOG0303 Actin-binding protein 99.7 9.4E-17 2E-21 156.5 18.6 231 43-332 74-320 (472)
167 KOG1007 WD repeat protein TSSC 99.7 1.6E-16 3.5E-21 148.8 19.2 239 37-310 109-362 (370)
168 KOG0290 Conserved WD40 repeat- 99.7 1.5E-16 3.2E-21 149.2 17.4 232 48-332 94-346 (364)
169 KOG4378 Nuclear protein COP1 [ 99.7 1.3E-16 2.9E-21 159.4 17.9 213 19-291 92-305 (673)
170 KOG0644 Uncharacterized conser 99.7 1.7E-17 3.8E-22 175.2 12.0 129 32-178 172-300 (1113)
171 KOG0290 Conserved WD40 repeat- 99.7 6E-16 1.3E-20 145.2 17.7 205 48-300 148-357 (364)
172 KOG2055 WD40 repeat protein [G 99.7 3.8E-16 8.2E-21 155.4 16.9 252 2-309 256-512 (514)
173 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-16 7.7E-21 159.5 16.8 166 63-250 243-430 (577)
174 KOG1188 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 149.0 16.6 251 26-310 48-347 (376)
175 COG2319 FOG: WD40 repeat [Gene 99.7 6.3E-14 1.4E-18 152.2 35.6 208 45-311 60-273 (466)
176 KOG2919 Guanine nucleotide-bin 99.7 1.1E-15 2.3E-20 145.5 17.4 239 51-344 105-363 (406)
177 KOG1240 Protein kinase contain 99.7 1.3E-14 2.9E-19 160.0 27.3 225 39-313 1037-1277(1431)
178 KOG1587 Cytoplasmic dynein int 99.7 3.6E-14 7.9E-19 152.6 29.2 206 72-309 222-428 (555)
179 COG2319 FOG: WD40 repeat [Gene 99.7 3.7E-13 8.1E-18 146.1 37.5 229 26-315 85-320 (466)
180 KOG0650 WD40 repeat nucleolar 99.7 3.7E-15 8E-20 152.7 19.2 185 90-310 397-596 (733)
181 KOG1538 Uncharacterized conser 99.7 1.3E-14 2.8E-19 150.1 22.6 176 52-292 14-189 (1081)
182 PRK11028 6-phosphogluconolacto 99.7 2E-13 4.3E-18 143.6 32.1 196 65-310 5-206 (330)
183 KOG1517 Guanine nucleotide bin 99.7 2E-14 4.2E-19 156.2 23.8 222 48-310 1062-1288(1387)
184 KOG1538 Uncharacterized conser 99.6 1.4E-14 3E-19 149.8 19.5 224 27-311 32-295 (1081)
185 KOG1009 Chromatin assembly com 99.6 1.3E-14 2.9E-19 142.4 18.4 258 20-312 28-375 (434)
186 KOG1007 WD repeat protein TSSC 99.6 4.1E-15 8.8E-20 139.5 14.1 187 49-246 169-361 (370)
187 KOG0303 Actin-binding protein 99.6 3.7E-15 8.1E-20 145.5 14.3 179 90-319 78-259 (472)
188 KOG1523 Actin-related protein 99.6 7.2E-14 1.6E-18 133.3 22.0 227 49-312 9-239 (361)
189 KOG1587 Cytoplasmic dynein int 99.6 4.3E-14 9.4E-19 152.1 22.5 237 29-311 223-518 (555)
190 KOG0644 Uncharacterized conser 99.6 1.6E-15 3.4E-20 160.7 9.9 159 90-308 187-345 (1113)
191 KOG1524 WD40 repeat-containing 99.6 9.2E-15 2E-19 147.8 13.0 195 36-307 90-284 (737)
192 KOG4497 Uncharacterized conser 99.6 7.6E-14 1.6E-18 133.3 17.8 209 56-310 14-241 (447)
193 KOG1445 Tumor-specific antigen 99.5 4.6E-14 9.9E-19 145.2 13.5 203 58-312 587-801 (1012)
194 KOG0322 G-protein beta subunit 99.5 3.2E-13 7E-18 125.4 16.2 248 14-308 21-322 (323)
195 KOG1517 Guanine nucleotide bin 99.5 7E-13 1.5E-17 144.4 20.4 264 4-312 1105-1384(1387)
196 PRK01742 tolB translocation pr 99.5 9.5E-13 2.1E-17 142.9 21.9 239 27-333 183-427 (429)
197 KOG0771 Prolactin regulatory e 99.5 3E-13 6.5E-18 134.1 15.5 202 54-310 148-355 (398)
198 KOG0649 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 118.1 19.1 233 51-331 11-256 (325)
199 KOG1240 Protein kinase contain 99.5 7.7E-12 1.7E-16 138.7 26.2 192 77-310 1034-1226(1431)
200 PRK01742 tolB translocation pr 99.5 2.1E-12 4.6E-17 140.2 21.9 176 71-311 183-363 (429)
201 KOG1310 WD40 repeat protein [G 99.5 9.7E-12 2.1E-16 126.6 24.7 225 20-252 64-309 (758)
202 KOG4227 WD40 repeat protein [G 99.5 4.4E-12 9.5E-17 123.8 20.9 277 19-310 69-388 (609)
203 KOG1963 WD40 repeat protein [G 99.5 6.7E-12 1.5E-16 135.3 23.9 254 22-311 221-489 (792)
204 PF02239 Cytochrom_D1: Cytochr 99.5 6.2E-11 1.4E-15 124.5 29.7 197 65-313 9-206 (369)
205 PRK11028 6-phosphogluconolacto 99.5 4.6E-11 9.9E-16 125.7 27.9 272 24-339 8-291 (330)
206 KOG0649 WD40 repeat protein [G 99.4 8.7E-12 1.9E-16 114.6 17.6 211 41-310 53-275 (325)
207 KOG2110 Uncharacterized conser 99.4 2.2E-10 4.8E-15 112.0 26.1 217 51-310 88-331 (391)
208 KOG1524 WD40 repeat-containing 99.4 2.8E-12 6.1E-17 130.1 13.3 207 63-347 76-282 (737)
209 KOG2110 Uncharacterized conser 99.4 6.1E-11 1.3E-15 115.8 21.0 195 52-311 48-250 (391)
210 KOG3881 Uncharacterized conser 99.4 6.3E-11 1.4E-15 116.5 21.1 159 12-181 13-184 (412)
211 KOG2394 WD40 protein DMR-N9 [G 99.4 3.2E-11 6.9E-16 122.9 19.1 249 54-331 127-384 (636)
212 KOG1523 Actin-related protein 99.4 3.6E-11 7.8E-16 115.1 17.3 204 27-248 31-238 (361)
213 KOG1334 WD40 repeat protein [G 99.3 1.7E-11 3.6E-16 123.5 14.9 296 15-341 151-456 (559)
214 KOG1272 WD40-repeat-containing 99.3 3.7E-12 7.9E-17 127.4 9.5 215 51-331 130-344 (545)
215 PRK04922 tolB translocation pr 99.3 1.9E-10 4.1E-15 125.3 23.6 235 28-331 184-432 (433)
216 KOG0771 Prolactin regulatory e 99.3 3.6E-11 7.9E-16 119.5 16.2 189 97-338 148-341 (398)
217 PRK03629 tolB translocation pr 99.3 3.8E-10 8.2E-15 122.3 25.2 223 44-332 192-428 (429)
218 KOG3881 Uncharacterized conser 99.3 8.5E-11 1.8E-15 115.6 17.4 235 46-333 101-343 (412)
219 KOG2139 WD40 repeat protein [G 99.3 2E-10 4.4E-15 111.7 19.5 206 51-310 99-310 (445)
220 PRK03629 tolB translocation pr 99.3 9.9E-10 2.1E-14 119.1 27.5 174 73-310 180-364 (429)
221 KOG1354 Serine/threonine prote 99.3 7.1E-11 1.5E-15 114.0 16.2 240 50-318 25-310 (433)
222 PRK02889 tolB translocation pr 99.3 5.2E-10 1.1E-14 121.4 23.6 230 41-332 186-425 (427)
223 KOG2394 WD40 protein DMR-N9 [G 99.3 8.1E-11 1.8E-15 119.9 15.4 166 60-253 183-369 (636)
224 PRK05137 tolB translocation pr 99.3 9.5E-10 2.1E-14 119.9 25.1 224 41-332 192-433 (435)
225 KOG2111 Uncharacterized conser 99.3 4E-10 8.7E-15 108.1 18.3 181 72-312 75-259 (346)
226 PRK04922 tolB translocation pr 99.2 1.2E-09 2.5E-14 119.1 23.7 176 72-311 184-370 (433)
227 PF08662 eIF2A: Eukaryotic tra 99.2 7.4E-10 1.6E-14 105.6 17.7 151 97-310 9-180 (194)
228 KOG2111 Uncharacterized conser 99.2 1.4E-08 3.1E-13 97.6 25.1 185 24-249 71-259 (346)
229 KOG2321 WD40 repeat protein [G 99.2 2.6E-09 5.7E-14 109.9 21.3 255 36-340 38-332 (703)
230 KOG4497 Uncharacterized conser 99.2 4.7E-09 1E-13 101.0 20.8 270 27-338 70-419 (447)
231 KOG2139 WD40 repeat protein [G 99.2 9.3E-10 2E-14 107.2 15.5 199 93-340 98-299 (445)
232 PRK02889 tolB translocation pr 99.2 6.6E-09 1.4E-13 112.8 24.2 178 72-311 176-362 (427)
233 PF08662 eIF2A: Eukaryotic tra 99.1 2.6E-09 5.5E-14 101.9 18.1 148 55-246 10-179 (194)
234 KOG0280 Uncharacterized conser 99.1 2.9E-09 6.2E-14 101.2 17.1 230 28-312 46-287 (339)
235 KOG1272 WD40-repeat-containing 99.1 1.7E-10 3.7E-15 115.7 8.9 206 40-306 200-406 (545)
236 KOG0974 WD-repeat protein WDR6 99.1 2.4E-09 5.3E-14 117.9 18.1 77 619-702 214-291 (967)
237 KOG2321 WD40 repeat protein [G 99.1 2E-09 4.4E-14 110.8 15.7 194 65-312 148-346 (703)
238 KOG2315 Predicted translation 99.1 7.1E-08 1.5E-12 99.7 26.1 223 50-335 34-284 (566)
239 COG5354 Uncharacterized protei 99.1 9.7E-08 2.1E-12 97.5 26.0 230 45-338 27-291 (561)
240 PF02239 Cytochrom_D1: Cytochr 99.1 1.4E-08 3E-13 106.9 20.3 189 26-254 14-210 (369)
241 TIGR02800 propeller_TolB tol-p 99.0 2.8E-08 6.1E-13 108.3 23.4 201 43-308 182-396 (417)
242 KOG1409 Uncharacterized conser 99.0 5.2E-09 1.1E-13 101.5 15.2 245 38-312 12-273 (404)
243 KOG0309 Conserved WD40 repeat- 99.0 1.7E-09 3.8E-14 114.1 12.8 231 50-334 24-258 (1081)
244 KOG0974 WD-repeat protein WDR6 99.0 7.3E-09 1.6E-13 114.2 17.9 193 57-312 94-291 (967)
245 PRK04792 tolB translocation pr 99.0 3.5E-08 7.5E-13 107.5 23.4 222 45-332 212-447 (448)
246 PRK00178 tolB translocation pr 99.0 4.7E-08 1E-12 106.8 24.6 224 43-332 191-428 (430)
247 PRK05137 tolB translocation pr 99.0 3.1E-08 6.8E-13 108.1 23.1 203 72-340 182-395 (435)
248 KOG0280 Uncharacterized conser 99.0 8.3E-09 1.8E-13 98.1 15.0 234 24-310 91-334 (339)
249 KOG1354 Serine/threonine prote 99.0 2.5E-08 5.4E-13 96.7 17.9 196 93-310 25-245 (433)
250 PF00400 WD40: WD domain, G-be 99.0 1.5E-09 3.2E-14 73.8 6.1 39 659-697 1-39 (39)
251 KOG1064 RAVE (regulator of V-A 99.0 2.7E-09 5.9E-14 122.8 11.8 193 48-312 2206-2401(2439)
252 PF10282 Lactonase: Lactonase, 98.9 4.5E-06 9.8E-11 88.0 33.7 209 65-310 2-223 (345)
253 COG5170 CDC55 Serine/threonine 98.9 2.4E-08 5.1E-13 95.5 14.3 242 50-317 26-317 (460)
254 PLN02919 haloacid dehalogenase 98.9 1.8E-06 3.9E-11 102.9 30.9 69 635-703 811-892 (1057)
255 KOG1409 Uncharacterized conser 98.9 1.1E-07 2.3E-12 92.5 16.6 195 24-249 42-273 (404)
256 KOG4532 WD40-like repeat conta 98.9 6.6E-07 1.4E-11 84.2 21.2 213 55-320 72-293 (344)
257 TIGR02800 propeller_TolB tol-p 98.8 3.8E-07 8.3E-12 99.4 22.8 201 72-338 170-381 (417)
258 PRK01029 tolB translocation pr 98.8 1.1E-06 2.3E-11 95.1 25.5 230 46-332 180-425 (428)
259 KOG1912 WD40 repeat protein [G 98.8 1E-06 2.2E-11 94.3 23.7 235 37-310 42-305 (1062)
260 KOG4547 WD40 repeat-containing 98.8 2.7E-07 5.9E-12 96.3 18.1 66 635-702 152-223 (541)
261 KOG4547 WD40 repeat-containing 98.7 4E-07 8.8E-12 95.0 17.4 193 60-310 3-221 (541)
262 KOG4190 Uncharacterized conser 98.7 4.2E-08 9E-13 100.5 9.2 212 44-311 729-950 (1034)
263 KOG1912 WD40 repeat protein [G 98.7 3E-06 6.5E-11 90.9 23.1 248 51-336 16-287 (1062)
264 KOG2314 Translation initiation 98.7 4.6E-06 1E-10 86.3 23.4 219 53-335 213-459 (698)
265 KOG4714 Nucleoporin [Nuclear s 98.7 2E-07 4.3E-12 87.3 11.9 170 41-247 80-255 (319)
266 PRK00178 tolB translocation pr 98.7 2.5E-06 5.4E-11 93.3 22.9 203 73-340 180-392 (430)
267 COG2706 3-carboxymuconate cycl 98.7 2.9E-05 6.2E-10 77.0 27.1 275 27-346 15-315 (346)
268 PLN02919 haloacid dehalogenase 98.7 1.2E-05 2.5E-10 96.1 29.4 243 54-311 571-835 (1057)
269 KOG0882 Cyclophilin-related pe 98.7 3.7E-07 8.1E-12 91.8 13.6 283 21-328 23-323 (558)
270 PF10282 Lactonase: Lactonase, 98.6 9E-06 1.9E-10 85.7 24.8 251 51-342 37-312 (345)
271 PRK04792 tolB translocation pr 98.6 3E-06 6.5E-11 92.4 21.7 200 73-338 199-409 (448)
272 KOG1064 RAVE (regulator of V-A 98.6 1.1E-07 2.3E-12 110.1 10.5 180 24-257 2226-2409(2439)
273 KOG3914 WD repeat protein WDR4 98.6 6.6E-07 1.4E-11 89.2 14.4 165 52-255 64-232 (390)
274 COG2706 3-carboxymuconate cycl 98.6 0.00011 2.4E-09 73.0 29.3 201 71-311 15-223 (346)
275 PF15492 Nbas_N: Neuroblastoma 98.6 2.9E-05 6.4E-10 74.7 24.5 233 56-314 3-264 (282)
276 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 64.7 5.7 38 41-78 2-39 (39)
277 KOG1832 HIV-1 Vpr-binding prot 98.6 4.8E-08 1E-12 105.4 5.5 230 12-312 1062-1294(1516)
278 KOG0309 Conserved WD40 repeat- 98.6 2.5E-07 5.4E-12 98.3 10.1 162 53-249 70-235 (1081)
279 KOG4714 Nucleoporin [Nuclear s 98.5 3.8E-07 8.1E-12 85.5 9.5 113 56-179 138-255 (319)
280 KOG2315 Predicted translation 98.5 8.4E-06 1.8E-10 84.8 20.1 217 49-334 164-413 (566)
281 KOG4532 WD40-like repeat conta 98.5 1.2E-05 2.7E-10 75.9 18.4 244 18-310 84-332 (344)
282 TIGR02658 TTQ_MADH_Hv methylam 98.5 5.9E-05 1.3E-09 77.8 25.4 251 22-321 71-342 (352)
283 KOG4190 Uncharacterized conser 98.5 3.6E-07 7.8E-12 93.8 8.8 183 85-313 728-910 (1034)
284 KOG3914 WD repeat protein WDR4 98.5 2.1E-07 4.5E-12 92.7 6.2 86 618-708 146-232 (390)
285 TIGR03300 assembly_YfgL outer 98.5 0.00016 3.4E-09 77.6 29.1 196 61-312 64-262 (377)
286 PF15492 Nbas_N: Neuroblastoma 98.5 4E-05 8.6E-10 73.8 20.7 198 53-260 46-273 (282)
287 TIGR03300 assembly_YfgL outer 98.4 0.00014 3E-09 78.1 26.6 191 61-312 104-300 (377)
288 KOG2695 WD40 repeat protein [G 98.4 1.4E-06 3E-11 85.0 8.7 166 57-257 218-387 (425)
289 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.6E-10 88.0 15.8 185 61-307 146-340 (1118)
290 COG4946 Uncharacterized protei 98.3 8.3E-05 1.8E-09 75.8 20.0 120 48-182 357-481 (668)
291 KOG2041 WD40 repeat protein [G 98.3 8.8E-06 1.9E-10 86.4 13.3 246 50-345 14-282 (1189)
292 COG5170 CDC55 Serine/threonine 98.3 3.9E-06 8.5E-11 80.6 9.7 256 27-311 47-369 (460)
293 KOG2041 WD40 repeat protein [G 98.3 7.4E-06 1.6E-10 87.0 12.5 250 37-338 58-325 (1189)
294 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00051 1.1E-08 71.0 25.7 234 72-334 27-311 (352)
295 KOG1275 PAB-dependent poly(A) 98.3 1.4E-05 3E-10 87.6 14.5 203 3-247 128-343 (1118)
296 PRK01029 tolB translocation pr 98.3 5.7E-05 1.2E-09 81.8 19.4 163 50-249 230-406 (428)
297 PF04762 IKI3: IKI3 family; I 98.3 0.00053 1.1E-08 80.7 28.6 231 50-332 75-359 (928)
298 PRK04043 tolB translocation pr 98.2 0.00054 1.2E-08 73.8 25.6 192 52-310 189-401 (419)
299 KOG2314 Translation initiation 98.2 8.9E-05 1.9E-09 77.1 18.3 251 52-339 251-555 (698)
300 KOG1645 RING-finger-containing 98.2 7.1E-05 1.5E-09 74.9 16.7 89 39-130 182-271 (463)
301 KOG2695 WD40 repeat protein [G 98.1 7.4E-06 1.6E-10 80.1 8.3 162 99-315 217-382 (425)
302 KOG2066 Vacuolar assembly/sort 98.1 0.00015 3.3E-09 78.9 18.6 165 46-247 54-234 (846)
303 PF08450 SGL: SMP-30/Gluconola 98.1 0.0011 2.3E-08 66.4 23.8 221 55-334 4-238 (246)
304 COG4946 Uncharacterized protei 98.1 0.00035 7.6E-09 71.4 19.0 176 58-299 327-508 (668)
305 KOG2066 Vacuolar assembly/sort 98.1 8.1E-05 1.8E-09 80.9 15.3 192 50-310 39-234 (846)
306 KOG0882 Cyclophilin-related pe 98.1 4.8E-05 1E-09 77.0 12.7 220 49-315 8-237 (558)
307 COG5354 Uncharacterized protei 98.1 0.00079 1.7E-08 69.7 21.1 250 51-342 72-380 (561)
308 PRK04043 tolB translocation pr 98.0 0.00084 1.8E-08 72.3 21.7 202 72-341 169-387 (419)
309 PF04762 IKI3: IKI3 family; I 98.0 0.00035 7.6E-09 82.2 20.1 219 49-311 208-458 (928)
310 PF08450 SGL: SMP-30/Gluconola 98.0 0.0032 7E-08 62.9 24.0 190 53-299 42-245 (246)
311 smart00320 WD40 WD40 repeats. 98.0 2.3E-05 5E-10 52.0 5.7 39 659-697 2-40 (40)
312 KOG1008 Uncharacterized conser 97.9 5.2E-06 1.1E-10 87.5 3.3 210 50-310 56-276 (783)
313 KOG2114 Vacuolar assembly/sort 97.9 0.00095 2.1E-08 73.4 20.4 220 52-326 27-259 (933)
314 PF11768 DUF3312: Protein of u 97.9 0.0012 2.6E-08 70.2 19.9 138 28-181 184-332 (545)
315 PF06977 SdiA-regulated: SdiA- 97.9 0.0015 3.3E-08 64.2 18.9 231 43-306 14-247 (248)
316 KOG1008 Uncharacterized conser 97.8 9.5E-06 2.1E-10 85.6 1.9 171 43-247 95-276 (783)
317 PF07433 DUF1513: Protein of u 97.7 0.015 3.2E-07 58.3 22.0 219 53-313 7-251 (305)
318 PF11768 DUF3312: Protein of u 97.6 0.00035 7.7E-09 74.1 10.8 74 48-126 257-330 (545)
319 KOG1645 RING-finger-containing 97.6 0.0027 5.9E-08 63.9 16.0 97 74-183 175-271 (463)
320 PRK11138 outer membrane biogen 97.6 0.1 2.2E-06 56.2 29.9 201 61-312 68-277 (394)
321 PF13360 PQQ_2: PQQ-like domai 97.6 0.0069 1.5E-07 60.1 18.8 194 60-312 34-233 (238)
322 PF07433 DUF1513: Protein of u 97.5 0.012 2.5E-07 58.9 18.8 175 56-253 56-254 (305)
323 KOG3621 WD40 repeat-containing 97.5 0.0098 2.1E-07 64.4 19.1 123 49-179 32-155 (726)
324 smart00320 WD40 WD40 repeats. 97.4 0.00033 7.2E-09 46.1 4.8 38 41-78 3-40 (40)
325 KOG1920 IkappaB kinase complex 97.4 0.026 5.7E-07 65.0 21.8 212 51-312 69-325 (1265)
326 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00025 5.3E-09 77.7 5.7 188 84-336 1093-1281(1516)
327 KOG3617 WD40 and TPR repeat-co 97.2 0.0019 4.1E-08 70.7 10.5 71 53-126 62-132 (1416)
328 KOG2114 Vacuolar assembly/sort 97.1 0.039 8.5E-07 61.3 19.4 177 38-249 52-246 (933)
329 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.034 7.4E-07 46.4 14.4 101 53-173 2-109 (111)
330 KOG4640 Anaphase-promoting com 97.0 0.0038 8.2E-08 66.7 9.4 94 51-157 21-115 (665)
331 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.12 2.5E-06 49.6 17.5 61 62-126 63-124 (354)
332 COG3204 Uncharacterized protei 96.8 0.33 7.2E-06 47.8 20.7 183 45-247 80-264 (316)
333 PF08596 Lgl_C: Lethal giant l 96.7 0.08 1.7E-06 56.3 17.4 225 37-309 73-335 (395)
334 PF04841 Vps16_N: Vps16, N-ter 96.7 0.67 1.5E-05 49.9 24.4 65 56-125 34-109 (410)
335 PF13360 PQQ_2: PQQ-like domai 96.5 0.22 4.8E-06 49.2 18.4 191 71-312 2-194 (238)
336 KOG3617 WD40 and TPR repeat-co 96.5 0.016 3.4E-07 63.9 10.0 110 54-179 19-132 (1416)
337 PF14583 Pectate_lyase22: Olig 96.4 0.47 1E-05 49.3 19.9 166 57-246 42-222 (386)
338 KOG1920 IkappaB kinase complex 96.4 0.55 1.2E-05 54.7 22.0 212 93-342 68-310 (1265)
339 PF06433 Me-amine-dh_H: Methyl 96.4 0.67 1.4E-05 47.3 20.2 253 26-325 65-336 (342)
340 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.17 3.7E-06 53.5 17.2 183 59-249 1-221 (353)
341 PF06977 SdiA-regulated: SdiA- 96.2 0.47 1E-05 46.8 17.9 205 90-333 18-233 (248)
342 PF08553 VID27: VID27 cytoplas 96.2 0.32 6.9E-06 55.7 18.6 212 63-310 494-725 (794)
343 KOG4640 Anaphase-promoting com 96.1 0.023 5.1E-07 60.9 8.9 77 93-183 20-97 (665)
344 KOG3621 WD40 repeat-containing 96.1 0.045 9.6E-07 59.6 10.8 112 159-310 44-155 (726)
345 COG3391 Uncharacterized conser 96.0 1.9 4E-05 46.1 23.2 206 53-313 76-287 (381)
346 PRK02888 nitrous-oxide reducta 96.0 0.25 5.3E-06 54.5 16.2 165 58-247 200-405 (635)
347 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.35 7.5E-06 40.6 13.5 103 96-241 2-109 (111)
348 PF12894 Apc4_WD40: Anaphase-p 96.0 0.021 4.6E-07 39.8 5.4 34 50-84 11-44 (47)
349 PRK11138 outer membrane biogen 95.9 0.32 7E-06 52.3 17.2 182 63-308 206-393 (394)
350 COG0823 TolB Periplasmic compo 95.9 0.48 1E-05 51.0 17.9 123 44-178 186-312 (425)
351 PF06433 Me-amine-dh_H: Methyl 95.9 1.3 2.9E-05 45.2 19.7 57 651-708 271-329 (342)
352 PF04053 Coatomer_WDAD: Coatom 95.7 0.2 4.4E-06 54.0 14.3 143 92-310 31-174 (443)
353 PF03178 CPSF_A: CPSF A subuni 95.7 0.74 1.6E-05 48.0 18.4 184 73-310 3-203 (321)
354 PF12894 Apc4_WD40: Anaphase-p 95.7 0.027 5.9E-07 39.2 5.0 31 669-699 11-41 (47)
355 PF08596 Lgl_C: Lethal giant l 95.7 1.5 3.2E-05 46.8 20.5 119 52-178 3-173 (395)
356 PF03178 CPSF_A: CPSF A subuni 95.7 0.93 2E-05 47.3 19.0 147 62-247 42-203 (321)
357 PF00930 DPPIV_N: Dipeptidyl p 95.7 2.7 5.9E-05 44.4 22.6 91 26-122 21-128 (353)
358 PF02897 Peptidase_S9_N: Proly 95.7 3.4 7.5E-05 44.7 24.0 117 52-180 125-262 (414)
359 PF08553 VID27: VID27 cytoplas 95.5 0.55 1.2E-05 53.8 17.0 131 31-178 505-647 (794)
360 COG0823 TolB Periplasmic compo 95.3 0.68 1.5E-05 49.8 16.5 202 73-338 174-386 (425)
361 PHA02713 hypothetical protein; 95.0 1.3 2.9E-05 49.9 18.4 23 290-312 512-536 (557)
362 COG3391 Uncharacterized conser 94.9 6.3 0.00014 42.1 22.6 232 52-339 32-270 (381)
363 PF04841 Vps16_N: Vps16, N-ter 94.8 6.9 0.00015 42.2 22.6 37 216-253 217-253 (410)
364 COG3490 Uncharacterized protei 94.8 4.1 8.9E-05 40.1 18.1 233 53-313 70-314 (366)
365 PRK02888 nitrous-oxide reducta 94.7 1.1 2.3E-05 49.7 15.7 85 216-310 321-405 (635)
366 KOG2444 WD40 repeat protein [G 94.3 0.13 2.8E-06 48.6 6.7 109 61-181 69-180 (238)
367 KOG4441 Proteins containing BT 94.3 5.2 0.00011 45.1 20.7 180 28-249 301-502 (571)
368 PF00780 CNH: CNH domain; Int 94.1 7.5 0.00016 39.3 20.6 159 60-250 5-169 (275)
369 KOG2079 Vacuolar assembly/sort 93.7 0.18 3.9E-06 57.7 7.6 73 50-125 130-203 (1206)
370 PF12234 Rav1p_C: RAVE protein 93.6 1.9 4.2E-05 48.2 15.3 123 51-177 30-155 (631)
371 KOG4649 PQQ (pyrrolo-quinoline 93.6 7.7 0.00017 37.7 20.3 104 62-182 23-127 (354)
372 KOG2079 Vacuolar assembly/sort 93.5 0.42 9.1E-06 54.9 10.1 101 160-303 99-199 (1206)
373 PF05694 SBP56: 56kDa selenium 93.3 6.1 0.00013 41.8 17.2 37 281-317 313-350 (461)
374 KOG4441 Proteins containing BT 93.1 4.8 0.0001 45.4 17.7 108 60-181 283-407 (571)
375 KOG2395 Protein involved in va 92.8 8.2 0.00018 41.4 17.3 143 65-246 349-500 (644)
376 KOG0553 TPR repeat-containing 92.8 0.27 5.9E-06 48.6 6.4 107 360-476 78-184 (304)
377 KOG1897 Damage-specific DNA bi 92.8 24 0.00051 41.1 28.0 84 629-716 777-873 (1096)
378 KOG2444 WD40 repeat protein [G 92.6 0.2 4.3E-06 47.4 5.0 70 636-705 111-183 (238)
379 COG3490 Uncharacterized protei 92.3 6.9 0.00015 38.6 14.9 61 57-122 120-186 (366)
380 COG3386 Gluconolactonase [Carb 92.2 13 0.00027 38.3 18.0 194 53-300 68-276 (307)
381 cd00216 PQQ_DH Dehydrogenases 92.2 16 0.00035 40.5 20.4 64 62-128 61-131 (488)
382 cd00216 PQQ_DH Dehydrogenases 92.1 12 0.00027 41.4 19.4 50 638-688 405-457 (488)
383 PF04053 Coatomer_WDAD: Coatom 92.0 2.3 5E-05 46.1 13.0 145 62-246 117-262 (443)
384 PF07569 Hira: TUP1-like enhan 91.9 0.67 1.4E-05 45.0 7.9 69 633-702 16-98 (219)
385 KOG4234 TPR repeat-containing 91.8 0.77 1.7E-05 42.6 7.6 121 362-488 94-215 (271)
386 PHA02713 hypothetical protein; 91.7 4.1 8.9E-05 46.0 15.2 22 228-249 513-536 (557)
387 KOG3630 Nuclear pore complex, 91.6 2.7 5.9E-05 49.0 13.2 161 92-298 99-262 (1405)
388 PF15390 DUF4613: Domain of un 91.4 4.3 9.4E-05 44.1 13.7 159 51-246 20-186 (671)
389 KOG4499 Ca2+-binding protein R 91.3 14 0.00031 35.4 16.2 113 148-298 158-273 (310)
390 PF10168 Nup88: Nuclear pore c 91.1 13 0.00028 43.0 18.3 98 214-314 83-184 (717)
391 PF10313 DUF2415: Uncharacteri 91.1 0.63 1.4E-05 31.5 4.7 31 217-247 2-34 (43)
392 PRK13616 lipoprotein LpqB; Pro 90.8 23 0.0005 40.1 19.8 104 51-175 350-473 (591)
393 PHA03098 kelch-like protein; P 90.5 17 0.00036 41.0 18.8 63 60-126 293-367 (534)
394 KOG2395 Protein involved in va 90.5 3.3 7.2E-05 44.2 11.7 142 20-179 348-501 (644)
395 KOG4499 Ca2+-binding protein R 90.3 4.9 0.00011 38.4 11.5 127 51-182 109-245 (310)
396 PF10168 Nup88: Nuclear pore c 90.1 42 0.00092 38.9 24.0 89 93-183 84-184 (717)
397 PF15390 DUF4613: Domain of un 89.5 4.5 9.8E-05 44.0 11.9 121 49-180 55-188 (671)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 89.4 33 0.00072 36.7 23.6 43 212-255 304-346 (415)
399 PF08728 CRT10: CRT10; InterP 89.3 28 0.00061 39.7 18.5 160 62-246 49-246 (717)
400 PF10313 DUF2415: Uncharacteri 89.2 1.6 3.6E-05 29.5 5.5 31 51-81 1-34 (43)
401 COG3386 Gluconolactonase [Carb 89.1 29 0.00063 35.6 20.1 225 57-329 31-262 (307)
402 PF05694 SBP56: 56kDa selenium 89.1 7.2 0.00016 41.3 12.8 145 39-183 166-347 (461)
403 KOG3630 Nuclear pore complex, 88.9 2.5 5.5E-05 49.2 10.0 115 52-178 102-228 (1405)
404 PF11635 Med16: Mediator compl 88.8 56 0.0012 38.5 23.7 236 64-304 64-345 (753)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 88.3 5.7 0.00012 42.4 11.9 87 39-126 296-399 (415)
406 KOG1916 Nuclear protein, conta 87.8 0.61 1.3E-05 52.5 4.3 119 46-178 128-265 (1283)
407 PHA02790 Kelch-like protein; P 87.7 26 0.00056 38.8 17.3 105 61-180 271-386 (480)
408 PF11715 Nup160: Nucleoporin N 86.9 1.6 3.4E-05 49.4 7.3 71 637-707 156-256 (547)
409 PF05096 Glu_cyclase_2: Glutam 86.8 35 0.00075 33.9 18.9 213 40-299 33-250 (264)
410 PF00780 CNH: CNH domain; Int 86.6 38 0.00082 34.1 16.9 161 107-312 7-168 (275)
411 KOG1916 Nuclear protein, conta 86.4 0.31 6.7E-06 54.8 1.2 64 635-699 191-265 (1283)
412 PHA03098 kelch-like protein; P 86.3 27 0.00059 39.3 16.9 63 61-126 342-415 (534)
413 KOG4460 Nuclear pore complex, 85.6 6.2 0.00013 42.2 10.0 99 214-314 102-203 (741)
414 PF14583 Pectate_lyase22: Olig 84.2 60 0.0013 34.2 21.2 114 55-180 85-224 (386)
415 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.0 78 0.0017 35.5 29.0 31 638-668 471-501 (527)
416 PRK13616 lipoprotein LpqB; Pro 83.1 40 0.00087 38.2 15.9 115 52-178 398-525 (591)
417 PF07676 PD40: WD40-like Beta 82.8 5 0.00011 26.4 5.5 34 663-696 2-38 (39)
418 PF02897 Peptidase_S9_N: Proly 82.7 4.5 9.7E-05 43.9 8.3 68 635-704 131-215 (414)
419 PF07569 Hira: TUP1-like enhan 82.2 8.5 0.00018 37.4 9.0 65 58-125 18-95 (219)
420 PF14870 PSII_BNR: Photosynthe 81.7 66 0.0014 32.9 17.8 159 49-243 143-301 (302)
421 PHA02790 Kelch-like protein; P 81.4 58 0.0013 36.0 16.5 63 60-126 317-385 (480)
422 KOG2247 WD40 repeat-containing 80.8 0.32 7E-06 51.0 -1.4 149 52-242 36-184 (615)
423 KOG2377 Uncharacterized conser 80.4 11 0.00023 39.8 9.2 118 49-180 65-187 (657)
424 KOG1983 Tomosyn and related SN 79.5 31 0.00068 41.7 14.1 73 51-125 36-108 (993)
425 TIGR02276 beta_rpt_yvtn 40-res 78.9 8.8 0.00019 25.5 5.8 31 637-667 1-32 (42)
426 TIGR02276 beta_rpt_yvtn 40-res 77.4 9.3 0.0002 25.4 5.6 40 289-329 1-41 (42)
427 PF14727 PHTB1_N: PTHB1 N-term 76.9 1.1E+02 0.0024 32.9 20.9 157 62-247 37-205 (418)
428 KOG1900 Nuclear pore complex, 76.6 43 0.00093 40.4 13.6 169 69-247 96-273 (1311)
429 PF14761 HPS3_N: Hermansky-Pud 76.5 36 0.00078 32.5 10.8 113 63-181 29-166 (215)
430 PF10214 Rrn6: RNA polymerase 75.8 1.8E+02 0.0038 34.5 22.0 92 215-313 145-236 (765)
431 TIGR02604 Piru_Ver_Nterm putat 75.3 77 0.0017 33.6 14.6 70 94-175 14-95 (367)
432 TIGR03118 PEPCTERM_chp_1 conse 75.2 99 0.0021 31.4 23.1 228 52-316 24-286 (336)
433 PF14781 BBS2_N: Ciliary BBSom 72.7 66 0.0014 28.2 12.2 112 55-180 3-127 (136)
434 TIGR02604 Piru_Ver_Nterm putat 71.5 1.1E+02 0.0023 32.6 14.6 108 52-167 15-142 (367)
435 KOG0548 Molecular co-chaperone 69.8 23 0.00049 38.4 8.6 112 365-486 360-471 (539)
436 PRK10115 protease 2; Provision 69.4 2.3E+02 0.0049 33.1 23.3 72 51-127 127-209 (686)
437 KOG4642 Chaperone-dependent E3 69.4 20 0.00042 34.7 7.2 98 360-467 7-104 (284)
438 COG5276 Uncharacterized conser 68.3 1.4E+02 0.003 30.1 20.9 159 93-312 86-244 (370)
439 PF08728 CRT10: CRT10; InterP 68.2 65 0.0014 36.9 12.2 118 52-178 102-246 (717)
440 KOG0551 Hsp90 co-chaperone CNS 67.9 12 0.00026 37.9 5.8 87 369-461 87-173 (390)
441 PF07676 PD40: WD40-like Beta 65.8 27 0.00058 22.8 5.6 30 48-77 6-38 (39)
442 COG3204 Uncharacterized protei 65.4 1.6E+02 0.0034 29.7 19.1 179 91-310 83-264 (316)
443 PF10214 Rrn6: RNA polymerase 65.2 2.9E+02 0.0063 32.7 22.8 148 91-250 77-236 (765)
444 PF12234 Rav1p_C: RAVE protein 64.5 43 0.00093 37.9 9.9 63 636-698 38-103 (631)
445 PF05096 Glu_cyclase_2: Glutam 63.5 1.6E+02 0.0036 29.3 15.3 141 63-234 101-249 (264)
446 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.1 2.6E+02 0.0056 31.4 22.0 60 648-708 440-499 (527)
447 KOG0547 Translocase of outer m 62.0 31 0.00067 37.0 7.7 88 367-464 119-206 (606)
448 smart00564 PQQ beta-propeller 61.6 18 0.00038 22.5 3.9 25 640-664 7-31 (33)
449 PF12657 TFIIIC_delta: Transcr 60.7 43 0.00093 31.1 8.0 31 671-701 87-123 (173)
450 TIGR03074 PQQ_membr_DH membran 59.3 3.6E+02 0.0078 31.8 24.1 68 61-128 193-281 (764)
451 PF08801 Nucleoporin_N: Nup133 59.1 1.4E+02 0.0031 32.3 12.9 31 216-247 190-220 (422)
452 PF07995 GSDH: Glucose / Sorbo 57.9 61 0.0013 33.8 9.4 58 637-694 269-330 (331)
453 PRK10115 protease 2; Provision 57.0 28 0.00061 40.4 7.3 65 635-701 134-209 (686)
454 KOG0543 FKBP-type peptidyl-pro 56.9 52 0.0011 34.5 8.2 121 364-488 209-338 (397)
455 TIGR03606 non_repeat_PQQ dehyd 56.2 3E+02 0.0066 30.0 15.7 56 638-694 368-430 (454)
456 PF12657 TFIIIC_delta: Transcr 56.1 85 0.0018 29.1 9.1 30 281-310 87-122 (173)
457 PF11715 Nup160: Nucleoporin N 56.0 22 0.00049 40.1 6.2 38 51-88 215-256 (547)
458 PF12768 Rax2: Cortical protei 56.0 1.1E+02 0.0024 30.9 10.4 97 71-181 15-126 (281)
459 PF14727 PHTB1_N: PTHB1 N-term 55.6 3E+02 0.0064 29.7 27.6 90 641-731 302-394 (418)
460 COG5167 VID27 Protein involved 54.7 3.2E+02 0.0069 29.8 13.5 134 30-179 490-633 (776)
461 KOG2377 Uncharacterized conser 54.3 2.3E+02 0.005 30.4 12.3 115 54-180 26-142 (657)
462 PF12768 Rax2: Cortical protei 54.3 26 0.00057 35.4 5.7 61 648-709 15-81 (281)
463 KOG3522 Predicted guanine nucl 51.6 2.9E+02 0.0062 32.2 13.3 149 64-249 549-700 (925)
464 KOG4648 Uncharacterized conser 51.5 42 0.00091 34.2 6.3 115 360-484 94-208 (536)
465 KOG1900 Nuclear pore complex, 49.0 5.2E+02 0.011 31.9 15.5 36 277-312 240-275 (1311)
466 PLN03088 SGT1, suppressor of 48.9 1.1E+02 0.0024 32.2 9.8 113 366-488 5-117 (356)
467 PF01011 PQQ: PQQ enzyme repea 48.9 51 0.0011 21.5 4.6 26 641-666 2-27 (38)
468 COG5167 VID27 Protein involved 48.6 27 0.00058 37.5 4.7 61 636-698 570-631 (776)
469 PF14761 HPS3_N: Hermansky-Pud 48.2 55 0.0012 31.3 6.3 59 640-699 29-98 (215)
470 COG4257 Vgb Streptogramin lyas 47.9 3E+02 0.0065 27.6 16.2 193 51-310 62-263 (353)
471 KOG2280 Vacuolar assembly/sort 47.7 4.9E+02 0.011 30.0 18.3 51 71-126 63-113 (829)
472 KOG1897 Damage-specific DNA bi 47.7 5.6E+02 0.012 30.6 20.9 155 52-246 776-942 (1096)
473 PF10647 Gmad1: Lipoprotein Lp 47.2 3E+02 0.0065 27.3 21.3 115 52-180 25-146 (253)
474 KOG0550 Molecular chaperone (D 46.2 41 0.00089 35.3 5.5 99 360-464 246-344 (486)
475 PF10395 Utp8: Utp8 family; I 45.4 5.2E+02 0.011 29.6 15.0 124 50-181 129-262 (670)
476 KOG3616 Selective LIM binding 44.6 1.9E+02 0.004 32.9 10.3 70 50-125 14-83 (1636)
477 COG5276 Uncharacterized conser 42.9 3.7E+02 0.0081 27.2 23.1 200 51-312 87-288 (370)
478 PF03088 Str_synth: Strictosid 42.7 1.4E+02 0.003 24.2 7.0 51 645-696 33-85 (89)
479 PF01436 NHL: NHL repeat; Int 41.8 70 0.0015 19.2 4.1 25 53-77 4-28 (28)
480 PLN02193 nitrile-specifier pro 41.7 5.2E+02 0.011 28.5 17.9 22 228-249 329-354 (470)
481 PF13570 PQQ_3: PQQ-like domai 39.1 46 0.001 21.9 3.3 21 638-658 20-40 (40)
482 PF10647 Gmad1: Lipoprotein Lp 37.8 4.2E+02 0.0091 26.3 17.8 119 52-174 67-192 (253)
483 PF10433 MMS1_N: Mono-function 37.3 6.2E+02 0.013 28.1 16.0 86 59-156 219-308 (504)
484 PF03088 Str_synth: Strictosid 37.2 2.2E+02 0.0049 23.0 7.4 40 70-113 35-74 (89)
485 PF12341 DUF3639: Protein of u 37.0 83 0.0018 19.0 3.6 26 51-78 2-27 (27)
486 PF08801 Nucleoporin_N: Nup133 35.5 6E+02 0.013 27.4 14.6 32 281-312 191-222 (422)
487 TIGR03074 PQQ_membr_DH membran 35.4 8.1E+02 0.018 29.0 16.8 46 637-685 689-741 (764)
488 PF14781 BBS2_N: Ciliary BBSom 35.2 3.2E+02 0.0069 24.1 12.0 77 99-181 4-84 (136)
489 PF07995 GSDH: Glucose / Sorbo 35.0 1.1E+02 0.0024 31.9 6.9 51 52-104 3-59 (331)
490 PF02333 Phytase: Phytase; In 34.4 5.9E+02 0.013 27.0 21.6 215 56-312 59-293 (381)
491 PF01731 Arylesterase: Arylest 34.1 80 0.0017 25.4 4.4 28 283-310 57-85 (86)
492 PF13449 Phytase-like: Esteras 34.0 5.5E+02 0.012 26.6 13.0 136 147-300 19-167 (326)
493 PRK13684 Ycf48-like protein; P 33.8 5.6E+02 0.012 26.6 18.2 110 50-173 172-283 (334)
494 PLN02193 nitrile-specifier pro 31.8 7.3E+02 0.016 27.3 14.8 62 61-126 228-303 (470)
495 COG4590 ABC-type uncharacteriz 31.5 2.3E+02 0.0051 30.3 8.2 169 44-249 214-389 (733)
496 PF14269 Arylsulfotran_2: Aryl 30.6 1.9E+02 0.0041 29.7 7.6 68 53-123 146-218 (299)
497 PLN02153 epithiospecifier prot 30.4 6.4E+02 0.014 26.2 19.5 63 61-126 32-110 (341)
498 PLN02153 epithiospecifier prot 30.3 6.4E+02 0.014 26.2 20.0 24 61-84 85-113 (341)
499 PF14339 DUF4394: Domain of un 30.0 5.4E+02 0.012 25.2 10.2 80 44-126 18-104 (236)
500 KOG4460 Nuclear pore complex, 30.0 7.9E+02 0.017 27.1 14.3 36 216-251 166-203 (741)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.4e-62 Score=484.95 Aligned_cols=712 Identities=36% Similarity=0.509 Sum_probs=564.6
Q ss_pred CCCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004679 1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (737)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~ 80 (737)
|-+..|+++.+...|..+-..+.......--..+..++++.+...|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-
T Consensus 1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~ 80 (758)
T KOG1310|consen 1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF 80 (758)
T ss_pred CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence 66778888887777776665554433331116778899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004679 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (737)
Q Consensus 81 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 160 (737)
..+.++.+..+|...|.|++|.|..+..++++|..|..|+++|+....+...+.+.......+..|...|..|+-.|.++
T Consensus 81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence 99999999899999999999999887789999999999999999987777777777778888999999999999999888
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004679 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (737)
Q Consensus 161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i 240 (737)
+.+.+++.||+|+-+|++...........+..+.. .........++..+|.++.+|++|+.|-..
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~n---------------y~~~lielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN---------------YNPQLIELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHH---------------hchhhheeeeeeecCCCCceEEecCCCchh
Confidence 99999999999999999986544322222222221 122235678999999999999999999999
Q ss_pred EEEECC-CCCCcccccCCCCCC----CCcccccccccc-CCCCccc---ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 241 RLYDRR-MLPPLTSCQKRMSPP----PCVNYFCPMHLS-EHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 241 ~iwd~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~---~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++||.| ..++...-.....++ .|+++|++.++. ..+.... .++-+.|+|+|..|++.-....|++||+..+
T Consensus 226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 999954 444443333323333 489999999983 2221111 2577889999999999988889999999997
Q ss_pred Ccceeeeec------CCCCeeeeecc----CCCCccCCCCCCCccc-ccccccccccccccchhhhHHHHhhhcccCCCC
Q 004679 312 GGRAMRYTV------GDASKIMSFTP----TLNGLELQPPIHDFLQ-TNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP 380 (737)
Q Consensus 312 ~~~~~~~~~------~~~~~~~~~~p----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (737)
+.+...+.. +.......|.. ......+........+ .+.+.. .......++..+.+...+....+...
T Consensus 306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrs-p~~a~~~~~~eL~e~ie~~~~egnd~ 384 (758)
T KOG1310|consen 306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRS-PYTAAQPRFYELPENIEKFKTEGNDG 384 (758)
T ss_pred CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccC-cccccccchhhchHHHHHHHhhccch
Confidence 765544332 11122222321 1111111111111111 112222 22344555677777777777777666
Q ss_pred ccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHH
Q 004679 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEA 460 (737)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (737)
.......+.+.......+.-+....++++|+++++.|.|++|.++|++||+.++.+++..+++|+++.++|..+.+..++
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 55555554444444444444555789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCC
Q 004679 461 LDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540 (737)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (737)
......++..+|...-....+..+...+..+..++..- ....+.||.+..+++.|.+-..+...+...+...+
T Consensus 465 l~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e-------~~~~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d 537 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSE-------MIRAFARIDTDLSSVRRFFWIHKVLRGCLLLISSD 537 (758)
T ss_pred hhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchh-------hhhhhheeccchhhhhhhhhhhhhhhhhhhhhccc
Confidence 99999999999977666667777777776654433222 23356788999999999999999999999999999
Q ss_pred CCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEe
Q 004679 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV 620 (737)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (737)
...+++.+.+...+....+.+...+|...+.|.+++++.++.+...--...+.....++.++|...+.+........+|.
T Consensus 538 ~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYv 617 (758)
T KOG1310|consen 538 IYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYV 617 (758)
T ss_pred ccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhhHHhhhc
Confidence 99999999999999999999999899999999999999887654443333444455566788999998888889999999
Q ss_pred eecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCC
Q 004679 621 GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 700 (737)
Q Consensus 621 gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~ 700 (737)
||++..++|+.+.|+...|.|+++||.||...||+..+|.++.++.|-...|.|+.-+|..+++||+|.|.+|+||.+..
T Consensus 618 GHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a 697 (758)
T KOG1310|consen 618 GHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA 697 (758)
T ss_pred cccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCChhhHHHHHHHHHHHhhhcccCC
Q 004679 701 SVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHS 736 (737)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (737)
.|.+...+..+|.+..+.+.++.|||+++|+++..
T Consensus 698 -~p~~~as~~h~pns~~iv~~~e~n~Q~~sR~~~~~ 732 (758)
T KOG1310|consen 698 -TPPSGASRNHRPNSYAIVATNEMNRQQGSRDSYIT 732 (758)
T ss_pred -CCCcccccccCCchhhhhhhhhhhhhhhccCCcch
Confidence 77778888889999999999999999999998754
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-48 Score=369.40 Aligned_cols=330 Identities=20% Similarity=0.319 Sum_probs=277.4
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
..+.||.++|.|++|+|+|..||+|+.|.++|+||+.+.....+. ++|...|.|++|+|| |..|++|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence 457899999999999999999999999999999999999999998 899999999999999 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
..++.. ....+.+|...|++++|.|- ...+|++++.||.|+|||+..+..
T Consensus 186 pktg~~---------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----------------- 239 (480)
T KOG0271|consen 186 PKTGQQ---------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----------------- 239 (480)
T ss_pred CCCCCc---------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----------------
Confidence 887543 25788999999999999873 346899999999999999987752
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+....+|+.+|+|+.|-.+ .++++|+.|++|++|+...+....++. ||..
T Consensus 240 --------~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lk--------------------GHah 289 (480)
T KOG0271|consen 240 --------VRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELK--------------------GHAH 289 (480)
T ss_pred --------EEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhc--------------------ccch
Confidence 3344578999999999864 599999999999999998876555442 2222
Q ss_pred cceeEEEEc-----------CCCC-------------------------EEEEEeCCCeEEEEEcCCCCc-ceeeeecCC
Q 004679 280 LHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAGG-RAMRYTVGD 322 (737)
Q Consensus 280 ~~i~~v~~s-----------p~g~-------------------------~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~ 322 (737)
+|+.++.+ |.++ .|++|+.|.++++|+....+. ...+.+|..
T Consensus 290 -wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~ 368 (480)
T KOG0271|consen 290 -WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA 368 (480)
T ss_pred -heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence 35555544 3333 599999999999999887663 445677888
Q ss_pred CCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcc
Q 004679 323 ASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML 402 (737)
Q Consensus 323 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (737)
.++.+.|+|+..-++..
T Consensus 369 lVn~V~fSPd~r~IASa--------------------------------------------------------------- 385 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASA--------------------------------------------------------------- 385 (480)
T ss_pred heeeEEECCCccEEEEe---------------------------------------------------------------
Confidence 88899999974321111
Q ss_pred hhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHH
Q 004679 403 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 482 (737)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (737)
T Consensus 386 -------------------------------------------------------------------------------- 385 (480)
T KOG0271|consen 386 -------------------------------------------------------------------------------- 385 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcc
Q 004679 483 NIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRD 562 (737)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (737)
T Consensus 386 -------------------------------------------------------------------------------- 385 (480)
T KOG0271|consen 386 -------------------------------------------------------------------------------- 385 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEE
Q 004679 563 VEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYI 642 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l 642 (737)
+.+.-+.+|..++++.+..|.||.+.||.+. ||.|.++|
T Consensus 386 -------------------------------------SFDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsRLl 424 (480)
T KOG0271|consen 386 -------------------------------------SFDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSRLL 424 (480)
T ss_pred -------------------------------------ecccceeeeeCCCcchhhhhhhccceeEEEE----eccCccEE
Confidence 1122233455566667779999999999988 99999999
Q ss_pred EEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004679 643 ASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (737)
Q Consensus 643 ~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~ 697 (737)
+|||.|.+++|||+++.++..-|.||.+.|.+|.|+|||..++|||.|..+|+|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=347.45 Aligned_cols=355 Identities=19% Similarity=0.228 Sum_probs=274.3
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004679 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
+...+ .+|.++|.|++|+|+ +..|++|+.|.++++||+.+. .|..+.++|...|.|++|+| ++..|
T Consensus 107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~i 172 (480)
T KOG0271|consen 107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKKI 172 (480)
T ss_pred ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccchh
Confidence 44556 799999999999998 799999999999999999973 34889999999999999999 67999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC----CcEEEEEeCCCc
Q 004679 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PHLLLVGGSDAF 239 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~----~~~l~t~s~Dg~ 239 (737)
++|+.||.|++||..+++.. ...+++|...|++++|.|-. .++||+++.||.
T Consensus 173 ASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS 228 (480)
T ss_pred hccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCCC
Confidence 99999999999999998754 44566789999999997642 468999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 319 (737)
|+|||+..+..+..+ .+|.. +|+|+.|--+| +|++|+.|++|++|+...+.....+.+
T Consensus 229 vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 229 VRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred EEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence 999999876544332 44555 69999998775 699999999999999999988889999
Q ss_pred cCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCC
Q 004679 320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG 399 (737)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (737)
|.+.++.++.+-+. ....+.|-+.+..+.. ..+..
T Consensus 287 HahwvN~lalsTdy-----~LRtgaf~~t~~~~~~-----~se~~----------------------------------- 321 (480)
T KOG0271|consen 287 HAHWVNHLALSTDY-----VLRTGAFDHTGRKPKS-----FSEEQ----------------------------------- 321 (480)
T ss_pred cchheeeeeccchh-----hhhccccccccccCCC-----hHHHH-----------------------------------
Confidence 99999999887642 1112222221111110 00000
Q ss_pred CcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHH
Q 004679 400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (737)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (737)
..++.+
T Consensus 322 ---------------------------------------------------~~Al~r----------------------- 327 (480)
T KOG0271|consen 322 ---------------------------------------------------KKALER----------------------- 327 (480)
T ss_pred ---------------------------------------------------HHHHHH-----------------------
Confidence 000000
Q ss_pred HHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCC
Q 004679 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE 559 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (737)
+..-.
T Consensus 328 ----Y~~~~----------------------------------------------------------------------- 332 (480)
T KOG0271|consen 328 ----YEAVL----------------------------------------------------------------------- 332 (480)
T ss_pred ----HHHhh-----------------------------------------------------------------------
Confidence 00000
Q ss_pred CcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCC-Ccc-ccccceEEEeeecccccceeeeecccC
Q 004679 560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY-QPE-TVIDMKQRYVGHCNVGTDIKQASFLGQ 637 (737)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~gh~~~~~~i~~~~~~s~ 637 (737)
...+..++++++|...+ |.. ...+++.+..||...|..+. |||
T Consensus 333 -------------------------------~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSP 377 (480)
T KOG0271|consen 333 -------------------------------KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSP 377 (480)
T ss_pred -------------------------------ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECC
Confidence 00011122333333333 332 33447789999999999877 999
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCChhh
Q 004679 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTAD 717 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~ 717 (737)
|++||||||-|.+|++||..+|+.+.+|+||.++|--|+||.|.++|+|||.|.++++|++++-+...-+.||.++|.
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf-- 455 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF-- 455 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHh
Q 004679 718 VLEAMESNQRKL 729 (737)
Q Consensus 718 ~~~~~~~~~~~~ 729 (737)
..++.++.|+-.
T Consensus 456 ~vDwspDG~rV~ 467 (480)
T KOG0271|consen 456 AVDWSPDGQRVA 467 (480)
T ss_pred EEEecCCCceee
Confidence 556666655543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-43 Score=342.83 Aligned_cols=211 Identities=25% Similarity=0.312 Sum_probs=186.0
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.+...--|-+.+|..+.|+++++.||||+.+|.++||+..+...+++| .+|...|.++.|+|..++..+++|+.||+++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCcee
Confidence 333344467789999999999999999999999999999999999999 8999999999999984367899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+|++... .++..+.+|...|..++|+| ++++|+|++.|.+-++||++++...
T Consensus 245 lw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El----------------- 296 (459)
T KOG0272|consen 245 LWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL----------------- 296 (459)
T ss_pred eeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-----------------
Confidence 9999863 34788999999999999999 7799999999999999999998632
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004679 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
.-..+|...|.+++|.|+ |.++++|+.|..-||||+|++..+..+ .+|..
T Consensus 297 --------L~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~gH~k- 346 (459)
T KOG0272|consen 297 --------LLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AGHIK- 346 (459)
T ss_pred --------HhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------ccccc-
Confidence 233468889999999997 689999999999999999999765444 34554
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|.+|+|+|+|..|++|+.|++++|||++.
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 699999999999999999999999999987
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-39 Score=299.69 Aligned_cols=218 Identities=22% Similarity=0.321 Sum_probs=189.1
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
++..++|+||.+.|.+|.|++|+++|++++.||.+.|||..+...++.+ +.....|..++|+|. ++++++|+.|+..
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCcee
Confidence 3455899999999999999999999999999999999999998888888 678899999999999 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.||++...+.... .+..+.+.+|++.+.|+.|-+ + ..|+|++-|.++.+||+++++.
T Consensus 122 siy~ls~~d~~g~----~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~----------------- 178 (343)
T KOG0286|consen 122 SIYPLSTRDAEGN----VRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ----------------- 178 (343)
T ss_pred EEEeccccccccc----ceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE-----------------
Confidence 9999986432211 233567889999999999987 5 4566999999999999999873
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+..+.+|.+.|.+++++|.+++.|++|+-|+..++||+|.+.-++.| .+|..
T Consensus 179 --------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF--------------------~ghes 230 (343)
T KOG0286|consen 179 --------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF--------------------EGHES 230 (343)
T ss_pred --------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee--------------------ccccc
Confidence 44556899999999999976899999999999999999987644444 55665
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.|++|.|.|+|.-+++|+.|++.++||++...
T Consensus 231 -DINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 231 -DINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred -ccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 59999999999999999999999999999843
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=289.37 Aligned_cols=188 Identities=18% Similarity=0.300 Sum_probs=157.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
-+|++++.|.+||+|...+|.+..++ +..++.|+.+...|+ +..|++++. -.|++||+++... .|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~~-qhvRlyD~~S~np--------~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAGN-QHVRLYDLNSNNP--------NPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhccC-CeeEEEEccCCCC--------CceeE
Confidence 48999999999999999999999999 666789999999999 677777764 6799999997553 46899
Q ss_pred eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004679 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (737)
Q Consensus 143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (737)
+.+|..-|+++.|.. +++.+++|+.||+++|||++..... ....+..+|+++.
T Consensus 79 ~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv 131 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV 131 (311)
T ss_pred EeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence 999999999999998 6799999999999999999985421 2223457899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe
Q 004679 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (737)
Q Consensus 223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~ 302 (737)
.+|. ...|++|..+|.|++||++.......+ .|.. .-.|.++...|||.+++++...|.
T Consensus 132 lhpn-QteLis~dqsg~irvWDl~~~~c~~~l-------------iPe~-------~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 132 LHPN-QTELISGDQSGNIRVWDLGENSCTHEL-------------IPED-------DTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ecCC-cceEEeecCCCcEEEEEccCCcccccc-------------CCCC-------CcceeeEEEcCCCcEEEEecCCcc
Confidence 9997 578999999999999999875422222 1111 125999999999999999999999
Q ss_pred EEEEEcCC
Q 004679 303 VYLMDVNH 310 (737)
Q Consensus 303 v~iwd~~~ 310 (737)
.++|++-.
T Consensus 191 cyvW~l~~ 198 (311)
T KOG0315|consen 191 CYVWRLLN 198 (311)
T ss_pred EEEEEccC
Confidence 99999876
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-39 Score=331.58 Aligned_cols=400 Identities=20% Similarity=0.203 Sum_probs=290.8
Q ss_pred cccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC
Q 004679 28 HSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 106 (737)
..+++|+ .++.+.++.++. |++||..|+|+|.+.+|++|+.|+.|+|||+..+.+.+.| .+|.+.|.++.|+|+..
T Consensus 84 ~llrv~~--L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 84 QLLRVWS--LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWN 160 (775)
T ss_pred ceEEEEE--cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccc
Confidence 3466666 667788999998 9999999999999999999999999999999999999999 89999999999999864
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC--
Q 004679 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-- 184 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~-- 184 (737)
-.+|++|..|+++++||++... .++..+..|.+.|++++|.++ +..+++++.|..+.+||+.+.+...
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred hhheeecCCCceEEEEEcccCc---------hHHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhhee
Confidence 4568999999999999999633 237888999999999999994 6778899999999999985544320
Q ss_pred -------------C--------CCCCCCccceEEEeccCCc---------------------------------------
Q 004679 185 -------------P--------AGSSHQECRNILLDLRCGA--------------------------------------- 204 (737)
Q Consensus 185 -------------~--------~~~~~~~~~~~~~~~~~~~--------------------------------------- 204 (737)
. .+.....+...+++...+.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 0 0000000111111110000
Q ss_pred -------------------------------------eee-------ccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004679 205 -------------------------------------KRS-------LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (737)
Q Consensus 205 -------------------------------------~~~-------~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i 240 (737)
.+. ..-.++|...|.++....+ +.+|++|+.|..+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~-g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS-GDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc-CcEEEEecCCceE
Confidence 000 0011456777777773333 4699999999999
Q ss_pred EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004679 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 319 (737)
++|.++... ....+.... .+|.. .|.+++++..+ .+|++++.|+++++|++...+....
T Consensus 390 ilWr~~~~~--------------~~~~~~a~~--~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--- 449 (775)
T KOG0319|consen 390 ILWRLNNNC--------------SKSLCVAQA--NGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--- 449 (775)
T ss_pred EEEEecCCc--------------chhhhhhhh--ccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccc---
Confidence 999884322 111111122 34554 59999997654 6899999999999999987321000
Q ss_pred cCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCC
Q 004679 320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG 399 (737)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (737)
.+. + .+.....
T Consensus 450 ----------~~~-----------------~-----------------------------------~~~~t~~------- 460 (775)
T KOG0319|consen 450 ----------PIV-----------------L-----------------------------------TCRYTER------- 460 (775)
T ss_pred ----------cce-----------------e-----------------------------------hhhHHHH-------
Confidence 000 0 0000000
Q ss_pred CcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHH
Q 004679 400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (737)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (737)
+++.........
T Consensus 461 ------------------------------------------------------------aHdKdIN~Vaia-------- 472 (775)
T KOG0319|consen 461 ------------------------------------------------------------AHDKDINCVAIA-------- 472 (775)
T ss_pred ------------------------------------------------------------hhcccccceEec--------
Confidence 000000000000
Q ss_pred HHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCC
Q 004679 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE 559 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (737)
T Consensus 473 -------------------------------------------------------------------------------- 472 (775)
T KOG0319|consen 473 -------------------------------------------------------------------------------- 472 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccceeeeccCCCCccccccCCCCCCCCCC-CCCCCCCCCCccccccceEEEeeecccccceeeeecccCC
Q 004679 560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSS-SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQR 638 (737)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d 638 (737)
.+++.+. .+++....+|..........+.||+..++++. |++.
T Consensus 473 --------------------------------~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~ 516 (775)
T KOG0319|consen 473 --------------------------------PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKN 516 (775)
T ss_pred --------------------------------CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE----eccc
Confidence 1111121 13445566677777888999999999999998 9999
Q ss_pred CCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCC
Q 004679 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD 714 (737)
Q Consensus 639 ~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~ 714 (737)
++.|||+|.|++|+||.+++..|+.+|.||+..|..+.|--+++.|+|+|.||.|+||++++.+|..++-+|+.+|
T Consensus 517 dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 517 DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=301.43 Aligned_cols=209 Identities=18% Similarity=0.192 Sum_probs=166.9
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
+..+.|..|+..|+-+.||++|++||+++.|.+..+|++.... ..+++ .+|..+|..+.|+|+ ..+|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence 3446688999999999999999999999999999999876443 45666 799999999999999 69999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.+.+||..++.... ..-.++...+.+++|.| ++..+++|+.|++|..||+.....- -
T Consensus 292 ~~~lwDv~tgd~~~---------~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------~ 348 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRH---------LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------N 348 (519)
T ss_pred heeeccCCcchhhh---------hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------c
Confidence 99999999865422 11123567899999999 5577889999999999999875411 0
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
|. ......|.+++..++ +.++++.+.|..|++|+..+......+ ..+
T Consensus 349 W~------------gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se~ 395 (519)
T KOG0293|consen 349 WE------------GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SEE 395 (519)
T ss_pred cc------------ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------ccc
Confidence 00 011246889999997 578888889999999998865432211 112
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+ +|++++.|.+|+++++.-.+..+++||+..
T Consensus 396 ~--~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 396 Q--PITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred C--ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 2 599999999999999999999999999885
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=308.83 Aligned_cols=248 Identities=19% Similarity=0.294 Sum_probs=204.7
Q ss_pred CCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004679 2 ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS 80 (737)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~ 80 (737)
|++.|+.-+...|..+..+..+......++-.+.++ .-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++.
T Consensus 167 e~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~-Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy 245 (503)
T KOG0282|consen 167 ESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYL-PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY 245 (503)
T ss_pred ccccccccchhhccccccccCCcccCCccccceeec-cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEe
Confidence 567788888888888888887776665555222222 2367889999999999999999 89999999999999999997
Q ss_pred C-CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC
Q 004679 81 S-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159 (737)
Q Consensus 81 ~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 159 (737)
. ++++.+| .+|..+|.+++|+++ |..|++++.|+.|++||+.++.. +..+. -...++|+.|+|++
T Consensus 246 ~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlwDtETG~~----------~~~f~-~~~~~~cvkf~pd~ 311 (503)
T KOG0282|consen 246 DDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRFLKLWDTETGQV----------LSRFH-LDKVPTCVKFHPDN 311 (503)
T ss_pred cCcceehhh-hcchhhhhhhhcccc--CCeeeeeecceeeeeeccccceE----------EEEEe-cCCCceeeecCCCC
Confidence 6 8899999 899999999999999 79999999999999999997532 34443 34567999999988
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004679 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
.+.+++|+.|+.|+.||+++++. +.....|-+.|..+.|-+. +..+++.+.|+.
T Consensus 312 ~n~fl~G~sd~ki~~wDiRs~kv-------------------------vqeYd~hLg~i~~i~F~~~-g~rFissSDdks 365 (503)
T KOG0282|consen 312 QNIFLVGGSDKKIRQWDIRSGKV-------------------------VQEYDRHLGAILDITFVDE-GRRFISSSDDKS 365 (503)
T ss_pred CcEEEEecCCCcEEEEeccchHH-------------------------HHHHHhhhhheeeeEEccC-CceEeeeccCcc
Confidence 89999999999999999999873 4445567789999999997 689999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++||+.+..-++..+.. .......+|..+|++.++++-+.|+.|.+|.+..
T Consensus 366 ~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred EEEEEcCCCccchhhcc--------------------hhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 99999987665543321 1111378899999999999999999999998554
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=296.64 Aligned_cols=261 Identities=19% Similarity=0.257 Sum_probs=233.5
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEEEeC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE 168 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~ 168 (737)
.+.+.+|..+.|+++ +..|++|+.+|.+++|...+. ..+.++.+|...|.++.|+|. +...|+||+.
T Consensus 172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence 366789999999999 799999999999999998863 237889999999999999997 4678999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
||++++|++.+..+ +....+|...|..++|+|+ |++|+|++.|.+-++||++++
T Consensus 240 Dgtvklw~~~~e~~-------------------------l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 240 DGTVKLWKLSQETP-------------------------LQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCceeeeccCCCcc-------------------------hhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence 99999999988652 4556678889999999997 699999999999999999987
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeee
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 328 (737)
..+.- ..||+. .|.+++|+|||..+++|+.|..-+|||++++.+
T Consensus 294 ~ElL~--------------------QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--------------- 337 (459)
T KOG0272|consen 294 SELLL--------------------QEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--------------- 337 (459)
T ss_pred hhhHh--------------------hccccc-ccceeEecCCCceeeccCccchhheeecccCcE---------------
Confidence 64322 155666 599999999999999999999999999999631
Q ss_pred eccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhh
Q 004679 329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC 408 (737)
Q Consensus 329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 408 (737)
T Consensus 338 -------------------------------------------------------------------------------- 337 (459)
T KOG0272|consen 338 -------------------------------------------------------------------------------- 337 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004679 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (737)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
T Consensus 338 -------------------------------------------------------------------------------- 337 (459)
T KOG0272|consen 338 -------------------------------------------------------------------------------- 337 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccc
Q 004679 489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL 568 (737)
Q Consensus 489 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (737)
T Consensus 338 -------------------------------------------------------------------------------- 337 (459)
T KOG0272|consen 338 -------------------------------------------------------------------------------- 337 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCC
Q 004679 569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD 648 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D 648 (737)
.-.|.||.+.|+.+. |||+|..|||||.|
T Consensus 338 -----------------------------------------------im~L~gH~k~I~~V~----fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 338 -----------------------------------------------IMFLAGHIKEILSVA----FSPNGYHLATGSSD 366 (459)
T ss_pred -----------------------------------------------EEEecccccceeeEe----ECCCceEEeecCCC
Confidence 115888999999888 99999999999999
Q ss_pred CcEEEEEcCcccEEEEeecCCCceEEEEecC-CCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004679 649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (737)
Q Consensus 649 ~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp-~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~ 715 (737)
++++|||++-..++.++.+|+..|+.|.|+| .|.+|+|+|.|++++||...+..|+.++-||.+.|.
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 9999999999999999999999999999999 578999999999999999999999999999999886
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=307.53 Aligned_cols=469 Identities=17% Similarity=0.204 Sum_probs=362.3
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
+.+++.|++|+.... ....+|.||+.+|++|.|...|..||+|+.|+.|.|||+-...-...+ .+|+..|+..-|..
T Consensus 83 GYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 83 GYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLN 159 (888)
T ss_pred EecCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccC
Confidence 567899999994433 788899999999999999999999999999999999999877777778 89999999999998
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC--C
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG--S 181 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~--~ 181 (737)
. .+++++++.|+.|++||+.+. .+..+.-.|...+..+++++ +.+++++.|+-+++|++... +
T Consensus 160 ~--~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~ 224 (888)
T KOG0306|consen 160 G--DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDE 224 (888)
T ss_pred C--CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccc
Confidence 6 589999999999999999962 23677778999999999976 68889999999999998110 0
Q ss_pred ----------------------CCC------------------------------------------CCCC---------
Q 004679 182 ----------------------SCP------------------------------------------PAGS--------- 188 (737)
Q Consensus 182 ----------------------~~~------------------------------------------~~~~--------- 188 (737)
.+. ....
T Consensus 225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~ 304 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE 304 (888)
T ss_pred ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence 000 0000
Q ss_pred -------------------------CCCccceEEEeccCCcee-----------------eccCCCCCccceEEEEEecC
Q 004679 189 -------------------------SHQECRNILLDLRCGAKR-----------------SLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 189 -------------------------~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~i~~sp~ 226 (737)
........+..+.++... .-....+|...|.+++++.+
T Consensus 305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD 384 (888)
T ss_pred hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence 000000001001111000 00123567888999999986
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004679 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (737)
Q Consensus 227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iw 306 (737)
+.++..+..+.+++|+..+.+.+.++. .+ .+.+..|-|.++++++|...|.+.+|
T Consensus 385 --~~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 385 --SILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred --ceeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEE
Confidence 344444557899999999887665542 11 38889999999999999999999999
Q ss_pred EcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhh
Q 004679 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA 386 (737)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (737)
|+.+.........|...+..++..|+..+......+..+-
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk---------------------------------------- 479 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK---------------------------------------- 479 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE----------------------------------------
Confidence 9999887777778888888888888876654443332111
Q ss_pred hhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHH
Q 004679 387 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA 466 (737)
Q Consensus 387 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (737)
T Consensus 480 -------------------------------------------------------------------------------- 479 (888)
T KOG0306|consen 480 -------------------------------------------------------------------------------- 479 (888)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCC-CCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcch
Q 004679 467 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG-ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDE 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (737)
+|+...... ....+ .+-+.+..+++.++|.+++.+.++++...+-++-+.++..+.
T Consensus 480 ---------------------fWdf~l~~~--~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 480 ---------------------FWDFKLVVS--VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred ---------------------EEeEEEEec--cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 111110000 00000 012335567888889999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCC--CCCCCCCCCCccccccceEEEeeec
Q 004679 546 EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSS--SSQNDRIPYQPETVIDMKQRYVGHC 623 (737)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~gh~ 623 (737)
-..++++.+++|..-+ ..|.+.+.++.+. .+.+..+.+|..+-+++.+.|.+|.
T Consensus 537 lDtlKFflsLYGHkLP------------------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd 592 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLP------------------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD 592 (888)
T ss_pred ecceeeeeeecccccc------------------------eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc
Confidence 9999999999998855 3356666666654 3677789999999999999999999
Q ss_pred ccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCC
Q 004679 624 NVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 703 (737)
Q Consensus 624 ~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~ 703 (737)
+.|.++. |-|+..+++|+|.|+.|+-||-+.-++++.|.||...|+|++.+|+|.+++|+|.|.+||+|.-..+.-
T Consensus 593 DSvm~V~----F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 593 DSVMSVQ----FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred CceeEEE----EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999888 899999999999999999999999999999999999999999999999999999999999998766544
Q ss_pred ccc
Q 004679 704 SIV 706 (737)
Q Consensus 704 ~~~ 706 (737)
...
T Consensus 669 ~lE 671 (888)
T KOG0306|consen 669 ILE 671 (888)
T ss_pred eee
Confidence 443
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-35 Score=295.27 Aligned_cols=256 Identities=18% Similarity=0.272 Sum_probs=204.0
Q ss_pred cCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC--C--CcEEEEECCCCeEEEEEcccCccc
Q 004679 20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD--D--THINVWSYSSRKLLHSIETGHSAN 95 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~--d--g~V~vwd~~~~~~~~~~~~~h~~~ 95 (737)
+-.++...+++++|+..-...-+..+|+--.++|..|+|++++++|+..++ + |.+.+|| +|..+..+ .+|...
T Consensus 73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei-~GhSr~ 149 (603)
T KOG0318|consen 73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEI-TGHSRR 149 (603)
T ss_pred EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCcccee-ecccee
Confidence 345677889999999777677777888888999999999999998887654 2 4455666 66778888 899999
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
|+++.|-|.. +-++++|+.|++|.+|+-.. ++.-.++..|..-|.|++|+| ++.++++.+.||+|.+|
T Consensus 150 ins~~~KpsR-PfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 150 INSVDFKPSR-PFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIY 217 (603)
T ss_pred EeeeeccCCC-ceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECC-CCCeEEEecCCccEEEE
Confidence 9999999986 77899999999999997543 344566778999999999999 57899999999999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004679 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
|=.+++.+ ..+.....|.+.|.+++|+|+ +..+++++.|.+++|||+.+.+.+.++.
T Consensus 218 DGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 218 DGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred cCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEee
Confidence 98888743 234445689999999999998 5899999999999999999988777765
Q ss_pred CCCCC-------------------CCCcccccccc----ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 256 KRMSP-------------------PPCVNYFCPMH----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 256 ~~~~~-------------------~~~~~~~~~~~----~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
..... ...+..+.+.. ....||.. .|+++..+|++.+|++|+.||.|.-|+..++.
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 43320 00011111111 11245665 69999999999999999999999999999976
Q ss_pred cc
Q 004679 313 GR 314 (737)
Q Consensus 313 ~~ 314 (737)
.-
T Consensus 354 ~~ 355 (603)
T KOG0318|consen 354 SD 355 (603)
T ss_pred cc
Confidence 43
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=313.50 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=176.8
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
-...|+++++.||+++|++++....+++|++.+++.+...+..|+.||.-++|+|. +.++++|+.|+.+++||+....
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~--g~LlAtggaD~~v~VWdi~~~~ 138 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT--GTLLATGGADGRVKVWDIKNGY 138 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCC--CceEEeccccceEEEEEeeCCE
Confidence 45689999999999999999999999999999999999885559999999999999 6999999999999999998632
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
+...+++|.+.|.++.|+|.- ..+|++|..|+++++||++.... .
T Consensus 139 ----------~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------------------c 184 (775)
T KOG0319|consen 139 ----------CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------------------------C 184 (775)
T ss_pred ----------EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------------------------H
Confidence 378999999999999999842 23688999999999999997653 1
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
+.....|...|++++|.++ +..+++++.|..+.+||+...+....++. ...+.++.+
T Consensus 185 l~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----------------------ye~~E~vv~ 241 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPL----------------------YESLESVVR 241 (775)
T ss_pred HHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheech----------------------hhheeeEEE
Confidence 4445568889999999998 58999999999999999966554433321 113667777
Q ss_pred cCC-----CCEEEEEeCCCeEEEEEcCCCCcceeee
Q 004679 288 SPN-----GEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (737)
Q Consensus 288 sp~-----g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 318 (737)
-++ |.++++++.+|.+++||..+++......
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~ 277 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR 277 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhc
Confidence 777 7899999999999999999987554443
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=270.42 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=177.3
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
.++..+.||++.|+.+.|+|+|..||||+.|..|.+|++.... -..++ ++|.++|..+.|.++ ++.+++++.|.+|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV 114 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence 4566788999999999999999999999999999999976543 33445 799999999999999 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+.||.++++. ...+++|..-|+++.-+..+..++.+++.||++++||+|+...+
T Consensus 115 ~~wD~~tG~~----------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~---------------- 168 (338)
T KOG0265|consen 115 RGWDAETGKR----------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI---------------- 168 (338)
T ss_pred EEEeccccee----------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----------------
Confidence 9999997533 67889999999999876667788999999999999999977633
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
.. ...+.+++++.|... +..+.+|+-|+.|++||++.......+ .||..
T Consensus 169 ---------~t-~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D 217 (338)
T KOG0265|consen 169 ---------KT-FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD 217 (338)
T ss_pred ---------hc-cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence 11 122467899999986 578999999999999999876644433 34554
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|+.+..+|+|.++++-+.|.++++||++.
T Consensus 218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -ceeeEEeccCCCccccccccceEEEEEecc
Confidence 699999999999999999999999999886
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=261.01 Aligned_cols=234 Identities=15% Similarity=0.246 Sum_probs=190.9
Q ss_pred ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004679 19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV 96 (737)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V 96 (737)
-+..+.+++++|++|. ..++...++++-..+.|+.+.+.|+++.||+|+. -.||+||+.++. .+.+| .+|...|
T Consensus 11 viLvsA~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCce
Confidence 3567889999999999 6778899999977889999999999999999886 589999999875 57788 7999999
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
+.+.|.-+ |..+++|+.||+++|||++... .+....|..+|+++..+| +...|++|..+|.|++||
T Consensus 87 taVgF~~d--grWMyTgseDgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 87 TAVGFQCD--GRWMYTGSEDGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEEEEeec--CeEEEecCCCceEEEEeccCcc-----------cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEE
Confidence 99999999 8999999999999999999733 233445789999999999 666777999999999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004679 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (737)
+........ -.+.....|.++...|+ +.+++.+...|.+++|++-..+....+.
T Consensus 153 l~~~~c~~~------------------------liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~- 206 (311)
T KOG0315|consen 153 LGENSCTHE------------------------LIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELE- 206 (311)
T ss_pred ccCCccccc------------------------cCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccce-
Confidence 998753211 11223467899999997 6899999999999999997744332221
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++..+ ..|.+ .|..+.+||++++|++++.|.+++||+..+
T Consensus 207 ------P~~k~-------~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 207 ------PVHKF-------QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ------Ehhhe-------ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 11111 22444 599999999999999999999999999776
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-34 Score=264.31 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=180.4
Q ss_pred cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004679 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
+....+|++|++.|+.++..+. .+.|++++.|.++.+|++.. |..++.+ .+|...|..+..+++ +++.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEec
Confidence 4566789999999999999986 57899999999999998864 5567778 799999999999999 7999999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004679 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.|+++++||+..+. +.+.+.+|...|.+++|++++ ..+++|+.|++|++|+.......
T Consensus 82 swD~~lrlWDl~~g~----------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~---------- 140 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGE----------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY---------- 140 (315)
T ss_pred cccceEEEEEecCCc----------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE----------
Confidence 999999999999742 367889999999999999954 78889999999999998765311
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004679 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
. +.. ..+...|.|+.|+|.. .-.|+.++.|+++++||+++.+....+
T Consensus 141 --t-----------~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------------------ 188 (315)
T KOG0279|consen 141 --T-----------IHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF------------------ 188 (315)
T ss_pred --E-----------Eec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc------------------
Confidence 1 111 1126789999999974 458999999999999999988765554
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.||.+ .++.+++||||..+++|+.||.+++||++.++
T Consensus 189 --~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 189 --IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred --ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 33554 49999999999999999999999999999854
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=285.89 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=168.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
+.+|..+.|.|+|+.|++|+..|.+.+|+...-.. ..+.+.|+.+|.++.|+++ +.+++||..+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn-- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN-- 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh--
Confidence 35899999999999999999999999999744322 2334789999999999999 799999999999999998852
Q ss_pred CCCCCCCCCCceeeccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
.+..+..|. ..|++++|+| +...|++|+.||+|+|||....+...
T Consensus 171 ---------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~------------------------ 216 (464)
T KOG0284|consen 171 ---------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEER------------------------ 216 (464)
T ss_pred ---------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhh------------------------
Confidence 255556555 8999999999 55778899999999999998876321
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
...+|.-.|.+++|+|.. .++++++.|..|++||.++++.+.++ ++|.. .|..+.|+
T Consensus 217 -vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~ 273 (464)
T KOG0284|consen 217 -VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN 273 (464)
T ss_pred -eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence 113567789999999985 69999999999999999998766554 44555 69999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC
Q 004679 289 PNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|++++|++++.|..+++||+++
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CCCCeeEEccCCceEEEEehhH
Confidence 9999999999999999999886
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=272.50 Aligned_cols=217 Identities=16% Similarity=0.272 Sum_probs=184.0
Q ss_pred ccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 35 ~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.-+.++.....+.||..+|+.+-|+|+-.++++++.|++|++||..++++...+ ++|...+.+++|+.. |.++++++
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~tcS 169 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLATCS 169 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEEecC
Confidence 345666677788899999999999999999999999999999999999998888 899999999999998 79999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|-.+++||.... ++++..+.+|...|.++.|-| .+.++++++.|.+|+.|++.++.
T Consensus 170 sDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~------------- 226 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY------------- 226 (406)
T ss_pred CccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce-------------
Confidence 9999999999852 234678889999999999999 55899999999999999999986
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
.+..+++|...|..+..+.+ +.++|+++.|.++++|-+.+++-...+
T Consensus 227 ------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l-------------------- 273 (406)
T KOG0295|consen 227 ------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL-------------------- 273 (406)
T ss_pred ------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh--------------------
Confidence 35556678889999999987 699999999999999999887432222
Q ss_pred CCCcccceeEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCC
Q 004679 275 HGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~---------------g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..|.- +|.+++|-|. ++++++++.|++|++||+.++
T Consensus 274 R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 274 REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 11222 4777887763 258999999999999999885
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=273.44 Aligned_cols=280 Identities=16% Similarity=0.210 Sum_probs=211.9
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCccceEEEEE
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKF 101 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~--~~h~~~V~~v~~ 101 (737)
.+.+..+.+++ -..+|...+++.|..-|+|+.|+|||+++||++.||+|.+||=.+++.+..+. .+|++.|.+++|
T Consensus 166 ~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 166 GSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred ccCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 56678888887 66778888999999999999999999999999999999999999999999882 289999999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCC---------------------------------CCCCCCCCceeeccCCC
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTR 148 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~ 148 (737)
+|| +..|++++.|.+++|||+....... .+.....++..+.+|..
T Consensus 244 sPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 244 SPD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred CCC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 999 6999999999999999998632110 01222346778899999
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (737)
.|+++..+| ++.+|++|+.||.|.-||...+..- ......|...|.+++-+..
T Consensus 322 ~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~------------------------~~~g~~h~nqI~~~~~~~~-- 374 (603)
T KOG0318|consen 322 SITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSD------------------------RLAGKGHTNQIKGMAASES-- 374 (603)
T ss_pred ceeEEEEcC-CCCEEEeeccCceEEEEecCCcccc------------------------ccccccccceEEEEeecCC--
Confidence 999999999 4589999999999999999988633 1122357778888888763
Q ss_pred cEEEEEeCCCcEEEEECCCCCCcccc--cCCCCCCCCcccccc---------cc---cc-----CCCCcccceeEEEEcC
Q 004679 229 HLLLVGGSDAFARLYDRRMLPPLTSC--QKRMSPPPCVNYFCP---------MH---LS-----EHGRSSLHLTHVTFSP 289 (737)
Q Consensus 229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~---~~-----~~~~~~~~i~~v~~sp 289 (737)
..+++++.|.++++.++.....-... .....| .++..... .+ +. ..-.-.+...+++++|
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 47888999999999988533211111 111111 11111000 00 00 0112233578899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC--cceeeeecCCCCeeeeeccCCCC
Q 004679 290 NGEEVLLSYSGEHVYLMDVNHAG--GRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
++.++++|+.|++|++|.+.... .......+..+++.++|+|++.-
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 99999999999999999998855 33456678889999999998643
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-34 Score=302.65 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=151.8
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
..++..-...++|..|++|+.+||.|-.|-.|++|.+...+ ++.+ + +.. +.+ .+=+.+.|-.+.+.
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l-k-~~~------~l~-----~~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL-K-DAS------DLS-----NIDTESADVDVDML 436 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc-c-chh------hhc-----cccccccchhhhhc
Confidence 34454445689999999999999999999999999998653 2233 1 111 111 12233444445555
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
|..... ....+.+|.++|....|+| +.++|++|+.|+++++|.+.+....
T Consensus 437 D~~~~~----------~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~------------------- 486 (707)
T KOG0263|consen 437 DDDSSG----------TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL------------------- 486 (707)
T ss_pred cccCCc----------eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------------
Confidence 555321 1466889999999999999 5589999999999999999987632
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
....+|..+|+.+.|+|. |.+||+++.|++.++|.....++.+.+. +|-. .|
T Consensus 487 ------V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifa--------------------ghls-DV 538 (707)
T KOG0263|consen 487 ------VIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFA--------------------GHLS-DV 538 (707)
T ss_pred ------EEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhc--------------------cccc-cc
Confidence 233478889999999997 7999999999999999998877666552 3333 59
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|+.|+|+..|+++|+.|.+|++||+.++
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCC
Confidence 99999999999999999999999999885
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-33 Score=249.66 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=178.1
Q ss_pred cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004679 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i 121 (737)
..+.|..|+++|.++.|+-+|++.++|+.|.+|++|+...+.+++++ .+|...|..++.+.+ ...|++|+.|..|.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEE
Confidence 45678899999999999999999999999999999999999999999 899999999999999 589999999999999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
||+.++. ..+.+.+|...|+.++|+. ....+++|+.|.++++||-+.....
T Consensus 86 wDV~TGk----------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e------------------ 136 (307)
T KOG0316|consen 86 WDVNTGK----------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE------------------ 136 (307)
T ss_pred EEcccCe----------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC------------------
Confidence 9999743 2788999999999999998 6689999999999999999887532
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004679 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
++..+......|.++..+. ..+++|+.||++|.||+|.++...-. -+.+
T Consensus 137 -----PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy-----------------------~g~p 185 (307)
T KOG0316|consen 137 -----PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY-----------------------FGHP 185 (307)
T ss_pred -----ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh-----------------------cCCc
Confidence 1222233456778887764 58999999999999999988743222 1226
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|++++|+++++..++++.|+++++.|-.++
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 999999999999999999999999987774
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=296.72 Aligned_cols=212 Identities=26% Similarity=0.413 Sum_probs=179.6
Q ss_pred ceeeccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 43 ERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 43 ~~~l~~H-~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
...+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+ ....+ .+|...|.+++|+|+ +.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCceE
Confidence 4455555 7899999999999999999999999999998777 66666 789999999999999 7899999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+|||+... + ..+.++.+|...|++++|+|.+ +++++|+.|++|++||+++++.
T Consensus 228 riwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~----------------- 280 (456)
T KOG0266|consen 228 RIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC----------------- 280 (456)
T ss_pred EEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-----------------
Confidence 99999431 1 2378899999999999999966 9999999999999999999753
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC--cccccCCCCCCCCccccccccccCCCC
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
+.....|...|.+++|+++ ++.|++++.|+.|++||+.++.. ...+.. ...
T Consensus 281 --------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~------------------~~~ 333 (456)
T KOG0266|consen 281 --------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSG------------------AEN 333 (456)
T ss_pred --------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccC------------------CCC
Confidence 3344568889999999997 68999999999999999998873 222211 112
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.. ++++++|+|++.++++++.|+.+++||+..+.
T Consensus 334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 22 58999999999999999999999999999853
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=249.47 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=180.1
Q ss_pred cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004679 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
+-.++++++|++.|..++|+|- |..||||+.|+.|+||+... -.+...+..+|+..|.+++|+|. |++|++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeec
Confidence 4456789999999999999997 88999999999999999884 44555666789999999999999 799999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|.++.||.-...+ ++++..+.+|...|.|++|++ ++++||+|+.|++|-+|.+..... .+
T Consensus 82 D~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------fe--- 141 (312)
T KOG0645|consen 82 DATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------FE--- 141 (312)
T ss_pred cceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------EE---
Confidence 9999999766432 566899999999999999999 779999999999999999986542 12
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.+.-...|...|..+.|+|. ..+|++++.|.+|++|+-.....- .|... + .
T Consensus 142 -----------c~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~t-----l--~ 192 (312)
T KOG0645|consen 142 -----------CIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQT-----L--D 192 (312)
T ss_pred -----------EEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEE-----e--c
Confidence 23334567888999999997 479999999999999987632110 11111 1 3
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|.. .|.+++|+|.|..|++++.|++|+||-..+
T Consensus 193 g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 193 GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred Cccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 3444 699999999999999999999999997553
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.7e-32 Score=259.94 Aligned_cols=212 Identities=16% Similarity=0.235 Sum_probs=179.7
Q ss_pred cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004679 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i 121 (737)
...+|..|++.|.+++.+|+.+++|||+.|..-.||++.++.....+ .+|+..|+++.|+.+ |.+|++|..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence 45788999999999999999999999999999999999999988888 899999999999999 799999999999999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
|...++.. ...+..--..+.=+.|+| ...+|+.|+.||.+-+|.+.+...
T Consensus 133 ~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~------------------- 182 (399)
T KOG0296|consen 133 FKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL------------------- 182 (399)
T ss_pred EEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce-------------------
Confidence 99987543 233333445677789999 678999999999999999987531
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004679 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
...+.+|...+++=.|.|+ ++.++++..||+|++||+.+++++..+... ....
T Consensus 183 ------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~~ 235 (399)
T KOG0296|consen 183 ------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGLE 235 (399)
T ss_pred ------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEeccc--------------------ccCc
Confidence 2334467888999999998 799999999999999999999877665321 1224
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004679 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
.+++.++..+..++.|+.++.+++-+..+++.
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKV 267 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceE
Confidence 67889999999999999999999999888763
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-31 Score=272.41 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=172.6
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
..+|++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+ +.++++++.||.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 3567899999999999999999999999999999999988877777 789999999999999 6899999999999999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
++.... ....+..|...+.++.|+++ +.++++++.|+.|.+||+++.+..
T Consensus 79 ~~~~~~----------~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETGE----------CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCccc----------ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 998532 25667788889999999994 678888888999999999865421
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
.....|...+.+++|+|+ +.++++++.|+.|++||++..+.+..+. .+.. .+
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~--------------------~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLT--------------------GHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEe--------------------cCcc-cc
Confidence 111245668999999997 5788888889999999998766544332 1222 59
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+++|+|+++.+++++.++.|++||+.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999999999999999999999876
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=258.56 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=183.1
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
.+..+.+.||.+-|.|+++.|..++++||+.|++|+|||+.+|++..++ .+|...|..+++++. -.++++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCCee
Confidence 3556678899999999999999999999999999999999999999999 899999999999999 4899999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+.||+... +.++.+.+|-+.|.|++.+| .-..|++|+.|.++++||+++..
T Consensus 218 KCwDLe~n----------kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~------------------ 268 (460)
T KOG0285|consen 218 KCWDLEYN----------KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA------------------ 268 (460)
T ss_pred EEEechhh----------hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc------------------
Confidence 99999863 34778889999999999999 45889999999999999999875
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
.+..+.+|...|..+.+.|.++ .+++|+.|++|++||++.++....+. |+.
T Consensus 269 -------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt---------------------~hk 319 (460)
T KOG0285|consen 269 -------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITLT---------------------HHK 319 (460)
T ss_pred -------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEeee---------------------ccc
Confidence 2445567899999999999865 78999999999999999887554432 334
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..+.+++.+|....+++++.| .|+.|++..+
T Consensus 320 ksvral~lhP~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 320 KSVRALCLHPKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred ceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence 469999999999888888887 7788877764
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-31 Score=263.53 Aligned_cols=228 Identities=16% Similarity=0.213 Sum_probs=181.8
Q ss_pred eeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--eEEE--EEc---------ccCccceEEEEEeeCCCCCE
Q 004679 44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLLH--SIE---------TGHSANVFCTKFVPETSDEL 109 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~--~~~~--~~~---------~~h~~~V~~v~~sp~~~~~~ 109 (737)
+.++ |+.+|.+.+|+|-.. +|++|+.|-..++|++... .... .+. ......|++++|+.+ |++
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~ 249 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL 249 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence 3344 999999999999655 8999999999999998741 1111 010 112467999999999 899
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004679 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~ 189 (737)
|++|+.||.++||+..- ....++..|.++|.++.|+. .+.+|++++.|+++.+||..++...
T Consensus 250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~------ 311 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVK------ 311 (524)
T ss_pred EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEE------
Confidence 99999999999999874 22678889999999999998 6689999999999999999877521
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004679 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (737)
..+..|..+...+.|-.+ ..|++++.|+.|+++-+....|+.++
T Consensus 312 -------------------q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~--------------- 355 (524)
T KOG0273|consen 312 -------------------QQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF--------------- 355 (524)
T ss_pred -------------------EeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee---------------
Confidence 111223344456777764 68999999999999999887766655
Q ss_pred ccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004679 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (737)
.+|++ .|.++.|.|.|.+|++++.|++++||+.........+..|...+..+.|+|+..
T Consensus 356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 33555 699999999999999999999999999988887777888888888888888643
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9e-31 Score=305.72 Aligned_cols=204 Identities=19% Similarity=0.286 Sum_probs=162.2
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
+.+|.+.|.+++|+|+|++||+|+.|+.|+|||+... . ....+ .+...|.+++|+|.. +.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4569999999999999999999999999999997542 1 12223 345689999999864 68999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
+|++||+... +.+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++... .
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~-- 612 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------G-- 612 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------E--
Confidence 9999999853 2256778999999999999867789999999999999999876522 0
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
.+ . +...+.++.|++.++.+|++|+.|+.|++||++..+ ++..+ .+
T Consensus 613 ---------~~---~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~ 659 (793)
T PLN00181 613 ---------TI---K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG 659 (793)
T ss_pred ---------EE---e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence 01 0 123578899977667899999999999999998654 11111 22
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|.. .|.++.|. ++.+|++++.|+.|++||+..
T Consensus 660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 333 59999997 788999999999999999875
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.8e-31 Score=254.86 Aligned_cols=263 Identities=18% Similarity=0.236 Sum_probs=189.0
Q ss_pred CChhhhhhhccccCCCCCcccccccccccccccccceeec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004679 8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL 85 (737)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~ 85 (737)
..++..+|....+..... |.+.. ++...+.+.+. -|.+-|.++... +++|++|+.||.++|||.. |+.+
T Consensus 67 RtsL~e~l~~kgiSsE~~----leIEY--v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~ 137 (423)
T KOG0313|consen 67 RTSLDEHLEEKGISSEEI----LEIEY--VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSI 137 (423)
T ss_pred eccHHHHHHHcCcChhhe----eEEEE--EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceE
Confidence 566777777666655443 33333 44443333333 388889988877 7899999999999999964 6778
Q ss_pred EEEcccCccceEEEEEeeC-CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004679 86 HSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 164 (737)
..+ .+|.++|.+++|.-. .....|++++.|.++++|-++.+.... +.+....+|...|-+++..+ ++..++
T Consensus 138 ~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~-sgtr~~ 209 (423)
T KOG0313|consen 138 KTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDS-SGTRFC 209 (423)
T ss_pred EEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh------hHHhHhcccccceeEEEecC-CCCeEE
Confidence 888 799999998887653 213369999999999999998654322 33455569999999999998 568888
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd 244 (737)
+|+.|.+|++|+......-.............-.....+....+....+|..+|.++.|++ ...+++++.|.+|+.||
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WD 287 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWD 287 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEE
Confidence 9999999999994332211000000000001111111222334556678999999999998 46999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.++..+.++. .+..++++..+|...+|++|+.|..+++||.+++
T Consensus 288 letg~~~~~~~----------------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 288 LETGGLKSTLT----------------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred eecccceeeee----------------------cCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 99987655442 1225999999999999999999999999998884
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.7e-31 Score=243.80 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=235.0
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
..+ ++|...|.++.|+++ ..++++++.||.+.|||.-+... ++.+.-....|..++|+| .++++++
T Consensus 49 r~L-kGH~~Ki~~~~ws~D--sr~ivSaSqDGklIvWDs~TtnK----------~haipl~s~WVMtCA~sP-Sg~~VAc 114 (343)
T KOG0286|consen 49 RTL-KGHLNKIYAMDWSTD--SRRIVSASQDGKLIVWDSFTTNK----------VHAIPLPSSWVMTCAYSP-SGNFVAC 114 (343)
T ss_pred EEe-cccccceeeeEecCC--cCeEEeeccCCeEEEEEcccccc----------eeEEecCceeEEEEEECC-CCCeEEe
Confidence 455 899999999999999 69999999999999999886432 566666788999999999 7799999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
|+.|....||++.....- +.........+|...+.++.|-++ ..|+|++.|.++.+||+
T Consensus 115 GGLdN~Csiy~ls~~d~~-------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAE-------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDI 173 (343)
T ss_pred cCcCceeEEEeccccccc-------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEc
Confidence 999999999999865311 222334556789999999999985 59999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 324 (737)
++++.+..+ +||.+ .|.+++++| +++.+++|+-|+..++||++.+.
T Consensus 174 e~g~~~~~f--------------------~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------------ 220 (343)
T KOG0286|consen 174 ETGQQTQVF--------------------HGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------------ 220 (343)
T ss_pred ccceEEEEe--------------------cCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCcc------------
Confidence 999877665 56666 599999999 99999999999999999998742
Q ss_pred eeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchh
Q 004679 325 KIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH 404 (737)
Q Consensus 325 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 404 (737)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHH
Q 004679 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (737)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (737)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccc
Q 004679 485 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE 564 (737)
Q Consensus 485 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (737)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEE
Q 004679 565 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 644 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~s 644 (737)
.++.|.||...|..+. |.|+|.-++|
T Consensus 221 --------------------------------------------------c~qtF~ghesDINsv~----ffP~G~afat 246 (343)
T KOG0286|consen 221 --------------------------------------------------CVQTFEGHESDINSVR----FFPSGDAFAT 246 (343)
T ss_pred --------------------------------------------------eeEeecccccccceEE----EccCCCeeee
Confidence 3347999999988777 8999999999
Q ss_pred ecCCCcEEEEEcCcccEEEEeecC--CCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004679 645 GSDDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (737)
Q Consensus 645 gs~D~~i~iWd~~t~~~~~~l~gH--~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~ 715 (737)
||+|+++++||++..+.+.++..- ..+|++|+||..|++|+.|..|.++-+||.-+++..-.+.||..|+.
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS 319 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence 999999999999999999999854 56899999999999999999999999999999999999999999986
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8e-32 Score=245.27 Aligned_cols=205 Identities=18% Similarity=0.247 Sum_probs=174.3
Q ss_pred eeecccCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 44 RELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|..+.+| .+|++.|.+...+.+ -.+-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchhh
Confidence 45679999999999996 8999999999999999999999999999 799999999999988 47889999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+||.-+++. +..+. |...|..++|+. +.++|++|+.++-+++||++..+.+
T Consensus 85 vw~a~tgde----------lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap----------------- 135 (334)
T KOG0278|consen 85 VWDAVTGDE----------LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP----------------- 135 (334)
T ss_pred hhhhhhhhh----------hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC-----------------
Confidence 999887543 55554 889999999998 6688889999999999999987744
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004679 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
.....+|...|..+-|...+ +.|+++..|++||+||.+++..++++... .
T Consensus 136 -------p~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------------------s 185 (334)
T KOG0278|consen 136 -------PKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFN----------------------S 185 (334)
T ss_pred -------chhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecC----------------------C
Confidence 33445678889999999864 78999999999999999999877766321 1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+|+++.++++|++|.++ ..+.|.+||..+.
T Consensus 186 ~VtSlEvs~dG~ilTia-~gssV~Fwdaksf 215 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIA-YGSSVKFWDAKSF 215 (334)
T ss_pred CCcceeeccCCCEEEEe-cCceeEEeccccc
Confidence 59999999999966555 4559999998874
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=274.72 Aligned_cols=472 Identities=18% Similarity=0.190 Sum_probs=304.7
Q ss_pred cccccccccccccccccceee--cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 26 VNHSLQMHSSLVRRLSQEREL--EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l--~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
....+.+|+ +++.+..+.| ..-+..|+|++-+++..+||.|..||.|+||+...+....++ .+|...|+++.|..
T Consensus 41 a~E~vn~Wd--lRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-ngHK~AVt~l~fd~ 117 (888)
T KOG0306|consen 41 ALEQVNIWD--LRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-NGHKAAVTTLKFDK 117 (888)
T ss_pred ccccEeEEe--eecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-cccccceEEEEEcc
Confidence 345688888 5555333332 334468999999999999999999999999999998888888 89999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
. |..|++|+.|+.|.+||+-...+ +..+.+|.+.|+..-|.. +..++++++.|+.|++||+.+..+
T Consensus 118 ~--G~rlaSGskDt~IIvwDlV~E~G----------l~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhC- 183 (888)
T KOG0306|consen 118 I--GTRLASGSKDTDIIVWDLVGEEG----------LFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHC- 183 (888)
T ss_pred c--CceEeecCCCccEEEEEecccee----------eEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEeccccee-
Confidence 9 89999999999999999986444 678999999999999987 568999999999999999998653
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--------------
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-------------- 249 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-------------- 249 (737)
+.+.-.|...++++++.+ +.+++++.|+.+++|++....
T Consensus 184 ------------------------f~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~ 236 (888)
T KOG0306|consen 184 ------------------------FETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR 236 (888)
T ss_pred ------------------------eeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence 222234667788888876 477778888888888871100
Q ss_pred ----------Cc---ccc-------c---------------------C---------CC---------------------
Q 004679 250 ----------PL---TSC-------Q---------------------K---------RM--------------------- 258 (737)
Q Consensus 250 ----------~~---~~~-------~---------------------~---------~~--------------------- 258 (737)
.+ ... . . ..
T Consensus 237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 00 000 0 0 00
Q ss_pred --------------CCCCC----------cccccc-------------ccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004679 259 --------------SPPPC----------VNYFCP-------------MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (737)
Q Consensus 259 --------------~~~~~----------~~~~~~-------------~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg 301 (737)
.+... +..++. ..+...||.. .|.++++|.+...+++|+ .+
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~ 394 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GE 394 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CC
Confidence 00000 000000 0012234555 599999998876555554 55
Q ss_pred eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCc
Q 004679 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPY 381 (737)
Q Consensus 302 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (737)
.+.+|+..+.++...+.. + -+...+|-|....+......+......
T Consensus 395 SikiWn~~t~kciRTi~~-~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfd-------------------------------- 440 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITC-G-YILASKFVPGDRYIVLGTKNGELQVFD-------------------------------- 440 (888)
T ss_pred cEEEEEccCcceeEEecc-c-cEEEEEecCCCceEEEeccCCceEEEE--------------------------------
Confidence 999999998765444332 2 344455556433222222111110000
Q ss_pred cchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHH
Q 004679 382 YGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461 (737)
Q Consensus 382 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (737)
.+ + ..+-+...|+
T Consensus 441 la------------------------------------------------------S-------------~~l~Eti~AH 453 (888)
T KOG0306|consen 441 LA------------------------------------------------------S-------------ASLVETIRAH 453 (888)
T ss_pred ee------------------------------------------------------h-------------hhhhhhhhcc
Confidence 00 0 0000111122
Q ss_pred HHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCC
Q 004679 462 DFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDS 541 (737)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (737)
+.+.+.....|+. ..-.+++.+.++
T Consensus 454 dgaIWsi~~~pD~-------------------------------------------------------~g~vT~saDktV 478 (888)
T KOG0306|consen 454 DGAIWSISLSPDN-------------------------------------------------------KGFVTGSADKTV 478 (888)
T ss_pred ccceeeeeecCCC-------------------------------------------------------CceEEecCCcEE
Confidence 2222223333332 223333334443
Q ss_pred CcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCC-CCCCCCCC-CCCCCCCCccccccceEEE
Q 004679 542 DYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSSSS-QNDRIPYQPETVIDMKQRY 619 (737)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 619 (737)
.+++-. +..++.|-.-. .+.+.-.+.=+.+...-|...| .+..++.+ -+..+.+...++.+..-.+
T Consensus 479 kfWdf~---l~~~~~gt~~k---------~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 479 KFWDFK---LVVSVPGTQKK---------VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred EEEeEE---EEeccCcccce---------eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 333211 01111111100 0000000000000111122212 12222222 2334555667778888899
Q ss_pred eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCC
Q 004679 620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 699 (737)
Q Consensus 620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~ 699 (737)
+||.-.|.++. +|||+++++|||.|++|+||=++-|+|-..|.+|++.|.+|.|-|...++.|+|.|+.|+-||-.
T Consensus 547 YGHkLPV~smD----IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 547 YGHKLPVLSMD----ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred cccccceeEEe----ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCh
Q 004679 700 ASVPSIVSGGAAGPDT 715 (737)
Q Consensus 700 ~~~~~~~~~~~~~~~~ 715 (737)
+=++++.+.||.+.+-
T Consensus 623 kFe~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 623 KFEEIQKLDGHHSEVW 638 (888)
T ss_pred hhhhheeeccchheee
Confidence 9999999999988764
No 33
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=2e-30 Score=240.36 Aligned_cols=231 Identities=19% Similarity=0.240 Sum_probs=192.5
Q ss_pred cccCCCCCccccccccccc---ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004679 18 RHTDTRPDVNHSLQMHSSL---VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94 (737)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~ 94 (737)
..+..+.+-++++.+|+.. .+.+.+.+.|.||...|..+..++||++.++++.|+++++||+.+++..+.| .+|..
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~ 106 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTK 106 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCC
Confidence 4445566777888888743 3335668999999999999999999999999999999999999999999999 79999
Q ss_pred ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC--CCceeEEEEecCC-CcEEEEEeCCCc
Q 004679 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGT 171 (737)
Q Consensus 95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~-~~~l~s~s~Dg~ 171 (737)
.|.+++|+|+ ...+++|+.|.+|++|++.... ..++..+ .+.|.|+.|+|.. .-+|++++.|++
T Consensus 107 dVlsva~s~d--n~qivSGSrDkTiklwnt~g~c-----------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 107 DVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVC-----------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred ceEEEEecCC--CceeecCCCcceeeeeeecccE-----------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 9999999999 6999999999999999997421 3333333 7899999999953 468999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004679 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
|++||+++.+. ...+.+|...++.++++|+ |.++++|+.||.+.+||++.++.+
T Consensus 174 vKvWnl~~~~l-------------------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 174 VKVWNLRNCQL-------------------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEEccCCcch-------------------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCcee
Confidence 99999998762 3455678899999999998 689999999999999999988765
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..+. + ...|.+++|+|+..+|+.+... .|+|||+.+.
T Consensus 228 ysl~---------------------a-~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 228 YSLE---------------------A-FDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred Eecc---------------------C-CCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence 4432 2 2259999999997766666555 6999999985
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=9.4e-32 Score=255.38 Aligned_cols=194 Identities=17% Similarity=0.315 Sum_probs=163.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
...|.|+.+ |.+.+++|..|++|+|||..+..++..+ .+|++.|.|+.|.. ..+++|+.|.+|++||++++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg-- 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG-- 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC--
Confidence 467899887 4567999999999999999999988888 89999999999975 58999999999999999974
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
+++.++..|...|..+.|+. .++++++.|.++.+||+.....+ ....
T Consensus 268 --------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~rr 314 (499)
T KOG0281|consen 268 --------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLRR 314 (499)
T ss_pred --------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHHH
Confidence 34788899999999999964 68999999999999999876522 1122
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
-..+|...|+.+.|+. +++++++.|.+|++|++.+...+.++ ++|.. .|.|+.+
T Consensus 315 VLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY-- 368 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY-- 368 (499)
T ss_pred HHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc--
Confidence 3346788999999984 59999999999999999998766554 55665 3776665
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 004679 290 NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|+++++|+.|.+|++||+..|
T Consensus 369 r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred cCeEEEecCCCceEEEEecccc
Confidence 8899999999999999999885
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-29 Score=237.36 Aligned_cols=214 Identities=22% Similarity=0.374 Sum_probs=173.2
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--
Q 004679 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-- 115 (737)
+++++.+.|+.-.+.|++|.|+++|.+|++++.|.+|+|||..+++.++++ ..++..|..++|... ...++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence 456777888888889999999999999999999999999999999999999 678889999999887 466666665
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|.+|+..++... ++++.+.+|...|.+++.+|.+ ..+++++.|++|++||++..++. .
T Consensus 79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq-----------g 136 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ-----------G 136 (311)
T ss_pred CCceEEEEeecC----------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc-----------e
Confidence 899999999863 4589999999999999999955 78889999999999999976643 1
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--CcccccCCCCCCCCcccccccccc
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
.+. ...-..++|+|+ |-++|++.....|++||+|+.. |..++.. ..
T Consensus 137 ~l~----------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-------------~~-- 184 (311)
T KOG1446|consen 137 LLN----------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKGPFTTFSI-------------TD-- 184 (311)
T ss_pred EEe----------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCCCceeEcc-------------CC--
Confidence 111 122345789997 5788888887799999999753 2222211 10
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.....++.+.|||||++++.++..+.+++.|.-+|
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 11124899999999999999999999999998775
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=264.72 Aligned_cols=212 Identities=14% Similarity=0.282 Sum_probs=184.3
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
++..++|..|+..|.++.|+|...+++++-.+|.|.|||.++...++.| .-...||.+.+|-+. .+.+++|+.|..|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~I 79 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQI 79 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceE
Confidence 3445667779999999999999999999999999999999999999999 677899999999999 6999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|+.++.+ .+..+.+|.+.|++++.+|.. -+++|+|.|-+|++||....=.
T Consensus 80 rVfnynt~e----------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa----------------- 131 (794)
T KOG0276|consen 80 RVFNYNTGE----------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWA----------------- 131 (794)
T ss_pred EEEecccce----------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCcee-----------------
Confidence 999999743 388999999999999999965 5677999999999999887532
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
....+.+|...|.+++|+|.+.+.+|+++-|++|++|.+.+..+..++ .+|..
T Consensus 132 -------~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek 184 (794)
T KOG0276|consen 132 -------CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK 184 (794)
T ss_pred -------eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc
Confidence 234456788899999999999999999999999999999876554443 34555
Q ss_pred cceeEEEEcC--CCCEEEEEeCCCeEEEEEcCC
Q 004679 280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 280 ~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|+++.+-+ |..+|++|+.|.+|+|||.++
T Consensus 185 -GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 185 -GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred -CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 499999987 557999999999999999988
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=266.21 Aligned_cols=398 Identities=14% Similarity=0.148 Sum_probs=287.7
Q ss_pred ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
...+.+.+++.||-..|.+|.|+.|.++|++|+.|-.++||+++..+- ...+ .+|..+|..+-|..+ ..-+++.+
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~--~~~l~tvs 208 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGAN--SLDLYTVS 208 (893)
T ss_pred cCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccC--cceEEEEe
Confidence 445677788999999999999999999999999999999999987654 4555 799999999999998 57899999
Q ss_pred CCCcEEEEecCCCCCCCC-----------------CCCCCCCc-------eeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004679 115 GDAEVRLFNLSRFSGRGL-----------------DDNAITPS-------ALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~-----------------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
.||.+.+|.....-.... ...+..+. ..+......|++.+|++ ..++|++|-..|
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG 287 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSG 287 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCC
Confidence 999999998872111000 00000010 11222347899999999 779999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCC
Q 004679 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP 249 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~ 249 (737)
-..+|.+.....+ .. .......|..++|+.. |.++|.|+.. |.+-||+.++..
T Consensus 288 ~f~LyelP~f~li--------------h~-----------LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 288 EFGLYELPDFNLI--------------HS-----------LSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred eeEEEecCCceEE--------------EE-----------eecccceeeEEEeccc-CCEEEEcCCccceEEEEEeeccc
Confidence 9999998876532 11 1112357889999986 6899998876 899999998754
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 329 (737)
-+.. ..+|.. .+++++++|||+++++|+.||+|+|||..++-+...+..|...++.++|
T Consensus 342 YVlK--------------------QQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 342 YVLK--------------------QQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred eeee--------------------cccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence 3322 244554 6999999999999999999999999999998888888899999999999
Q ss_pred ccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhH
Q 004679 330 TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCI 409 (737)
Q Consensus 330 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 409 (737)
+...+.+.....++.+..-.+... +.|. .-..+.|.. +
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRY------------------------rNfR------------Tft~P~p~Q-f----- 438 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRY------------------------RNFR------------TFTSPEPIQ-F----- 438 (893)
T ss_pred EecCCEEEEeecCCeEEeeeeccc------------------------ceee------------eecCCCcee-e-----
Confidence 997765554444433332111111 1110 000000000 0
Q ss_pred HHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhh
Q 004679 410 RAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA 489 (737)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (737)
..+..||.
T Consensus 439 ----------------------scvavD~s-------------------------------------------------- 446 (893)
T KOG0291|consen 439 ----------------------SCVAVDPS-------------------------------------------------- 446 (893)
T ss_pred ----------------------eEEEEcCC--------------------------------------------------
Confidence 00000000
Q ss_pred hhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCccccccccc
Q 004679 490 AAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH 569 (737)
Q Consensus 490 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (737)
T Consensus 447 -------------------------------------------------------------------------------- 446 (893)
T KOG0291|consen 447 -------------------------------------------------------------------------------- 446 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeccCCCCccccccCCCCCCCCCCCC--CCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecC
Q 004679 570 GSLNVRIHRRGDSARETVDANGSSGSPSSSS--QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSD 647 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~ 647 (737)
+..++++ ..-.+.+|..++++++..+.||.+.|..+. |+|+++.|||||.
T Consensus 447 ------------------------GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~----f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 447 ------------------------GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS----FSPDGSLLASGSW 498 (893)
T ss_pred ------------------------CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE----EccccCeEEeccc
Confidence 0011111 122355678888889999999999998766 8999999999999
Q ss_pred CCcEEEEEcCccc-EEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004679 648 DGRWFIWEKQTGR-LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 648 D~~i~iWd~~t~~-~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
|.+|++||+-... .+.+|. +..-|++|+|+|||+-||.+..||.|-+||++.....-++.
T Consensus 499 DkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred cceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999987553 444444 45679999999999999999999999999999877664444
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=248.35 Aligned_cols=188 Identities=16% Similarity=0.189 Sum_probs=161.8
Q ss_pred EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004679 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (737)
Q Consensus 85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 164 (737)
...+ .+|..+|+.+-|+|+ -.++++++.|++|++||..+++ ....+++|.+.+.+|+|+. .+.+++
T Consensus 101 ~~~l-~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~----------~e~~LrGHt~sv~di~~~a-~Gk~l~ 166 (406)
T KOG0295|consen 101 VQKL-AGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGE----------LERSLRGHTDSVFDISFDA-SGKYLA 166 (406)
T ss_pred hhhh-hccccceeeeeeccC--ceEEEEecCCceEEEEEccchh----------hhhhhhccccceeEEEEec-CccEEE
Confidence 3344 679999999999999 6888999999999999999743 3688999999999999998 669999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd 244 (737)
+++.|-.+++||+.+.. ..+....+|...|.+++|-|. +.++++++.|.+|++|+
T Consensus 167 tcSsDl~~~LWd~~~~~------------------------~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFF------------------------RCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE 221 (406)
T ss_pred ecCCccchhheeHHHHH------------------------HHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence 99999999999998753 124555678888999999997 58999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004679 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 324 (737)
+.++-.+.++ .+|.. +|..++.+.||..+++++.|.+|++|-+.+......+..+.+++
T Consensus 222 ~~tg~cv~t~--------------------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 222 CDTGYCVKTF--------------------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred cccceeEEec--------------------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 9988655444 33444 79999999999999999999999999999988888888999999
Q ss_pred eeeeeccC
Q 004679 325 KIMSFTPT 332 (737)
Q Consensus 325 ~~~~~~p~ 332 (737)
.+++|.|.
T Consensus 281 Eci~wap~ 288 (406)
T KOG0295|consen 281 ECIAWAPE 288 (406)
T ss_pred EEEEeccc
Confidence 99999984
No 39
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.9e-31 Score=253.99 Aligned_cols=235 Identities=16% Similarity=0.236 Sum_probs=180.1
Q ss_pred CCCC-CChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004679 4 FPFH-DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS 81 (737)
Q Consensus 4 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~ 81 (737)
.|++ ++.+.|+-..+|.- .+....++.+...+. .+..|.||.+.|.||+=+|.. ..+|+|+.||.|+|||+.+
T Consensus 24 ~~rn~dp~lhPfe~~rEy~---RALNAtKleR~fakP--Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq 98 (433)
T KOG0268|consen 24 VPRNYDPALHPFERAREYT---RALNATKLERVFAKP--FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ 98 (433)
T ss_pred cccccCCcCChhhhHHHHH---HHhhhHHHHHHhhcc--chhhccccccccchhhcCcchhhhhhccccCceEEEEehhh
Confidence 3444 45555555554442 233444555544433 456789999999999999976 7899999999999999999
Q ss_pred CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004679 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (737)
Q Consensus 82 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 161 (737)
..++..| ..|.+.|..|++... .+++++.|.+|+.|-+.. .+..++.+ ...+..|.-+. ...
T Consensus 99 R~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~ 160 (433)
T KOG0268|consen 99 RECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNS 160 (433)
T ss_pred hhhhhee-ecccCceeeEEeccc----ceEEecCCcceeeeeccC-----------Ccceeeec-ccccccccccc-ccc
Confidence 9999999 899999999999874 688999999999999874 23555543 34466666665 457
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004679 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (737)
Q Consensus 162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~ 241 (737)
.++||+. .|.+||.....++ ..+.-....|.++.|+|.....|++|..|+.|.
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv-------------------------~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPV-------------------------SSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred cccccCc--eeeecccccCCcc-------------------------ceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 8888886 4999999877644 112223457899999999888999999999999
Q ss_pred EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+||+|...+++.+.... .-+.++|+|++-.+++|+.|..++.||++.
T Consensus 214 LyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred EEecccCCccceeeeec----------------------cccceecCccccceeeccccccceehhhhh
Confidence 99999999887764322 245689999888899999999999999886
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.3e-30 Score=273.97 Aligned_cols=212 Identities=22% Similarity=0.327 Sum_probs=191.7
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
....+++.||.++|...+|+|+.++|++|+.|++||+|.+.+..++..+ .+|..||+++.|+|. |.+|||++.|++.
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCcee
Confidence 3455679999999999999999999999999999999999999999888 799999999999999 8999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|.... ..|++.+.+|-+.|.|+.|+| +..++++||.|.+|++||+.++..
T Consensus 518 rLWs~d~----------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~----------------- 569 (707)
T KOG0263|consen 518 RLWSTDH----------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS----------------- 569 (707)
T ss_pred eeeeccc----------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-----------------
Confidence 9999886 356899999999999999999 789999999999999999999862
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+..+.+|...|.+++|+|+ |.+|++|+.|+.|++||+.++.++..+ .+| .
T Consensus 570 --------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~H-t 619 (707)
T KOG0263|consen 570 --------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGH-T 619 (707)
T ss_pred --------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcc-c
Confidence 3334578999999999996 799999999999999999998877665 345 3
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+.|.++.|+.+|..|++|+.|+.|++||+....
T Consensus 620 ~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 620 GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 369999999999999999999999999998743
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.9e-28 Score=254.93 Aligned_cols=363 Identities=15% Similarity=0.165 Sum_probs=271.0
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
.+...|++++.||+|.+|++....|...+-++.....++.| ..+.+|.|++|+|+ |.+++.|. .+.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn--g~~fav~~-gn~lqiw~~P~~ 127 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN--GKFFAVGC-GNLLQIWHAPGE 127 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--CcEEEEEe-cceeEEEecCcc
Confidence 47789999999999999999999999999999988888877 36789999999999 67777765 578999987642
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
... .-+.+.....+.+|.+.|+++.|+. +.++|++|+.|.++++|+++..+.. .
T Consensus 128 ~~~--~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~-----------------------~ 181 (893)
T KOG0291|consen 128 IKN--EFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL-----------------------F 181 (893)
T ss_pred hhc--ccCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc-----------------------c
Confidence 221 1122233467789999999999998 6799999999999999999887632 1
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC-----------CCCCCCC-ccc-cc--c-cc
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK-----------RMSPPPC-VNY-FC--P-MH 271 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~-~~~-~~--~-~~ 271 (737)
.....+|...|.++-|..+ ...+++.+.||.+.+|-.....+. .... ....... ... +. . .+
T Consensus 182 ~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~~-~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPPE-LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred eEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCcc-cccccccccccccccccccchhhhcceEEEEEEee
Confidence 3334578899999999987 578999999999999987632111 0000 0000000 000 00 0 11
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccccccc
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR 351 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 351 (737)
... .....+++.+|++.-..|++|-..|...+|++........+.-..+.+..++|+.++.-++....
T Consensus 260 ~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---------- 327 (893)
T KOG0291|consen 260 YLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---------- 327 (893)
T ss_pred eec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----------
Confidence 111 11236999999999999999999999999999986655444444555555555554322222110
Q ss_pred ccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHH
Q 004679 352 VRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY 431 (737)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 431 (737)
T Consensus 328 -------------------------------------------------------------------------------- 327 (893)
T KOG0291|consen 328 -------------------------------------------------------------------------------- 327 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcC
Q 004679 432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG 511 (737)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 511 (737)
T Consensus 328 -------------------------------------------------------------------------------- 327 (893)
T KOG0291|consen 328 -------------------------------------------------------------------------------- 327 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCC
Q 004679 512 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANG 591 (737)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (737)
T Consensus 328 -------------------------------------------------------------------------------- 327 (893)
T KOG0291|consen 328 -------------------------------------------------------------------------------- 327 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc
Q 004679 592 SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV 671 (737)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~ 671 (737)
..++..+|.++.-..+.+..||-..++++. +||||+++|||++||+|+|||..+|-|+.+|.-|+..
T Consensus 328 ---------klgQLlVweWqsEsYVlKQQgH~~~i~~l~----YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~ 394 (893)
T KOG0291|consen 328 ---------KLGQLLVWEWQSESYVLKQQGHSDRITSLA----YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG 394 (893)
T ss_pred ---------ccceEEEEEeeccceeeeccccccceeeEE----ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc
Confidence 011222233333445567889999999888 9999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004679 672 VNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 672 V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
|+++.|+..++.++|+|.||+||.||++....-.+..
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 9999999999999999999999999999988766654
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-30 Score=269.38 Aligned_cols=225 Identities=18% Similarity=0.264 Sum_probs=181.4
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.|+..+..|.+++|+|...+++++--+|.|++||.+=+.++..| ..|.++|..++|+|. +.+|+||+.|-.|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 35556788999999999999999999999999999999999999 799999999999999 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
.+. +++.++.+|-+.|..+.|++.- -.++++|.|.+|++|+..+.+.
T Consensus 81 k~r----------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~---------------------- 127 (1202)
T KOG0292|consen 81 KTR----------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC---------------------- 127 (1202)
T ss_pred ccc----------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----------------------
Confidence 862 3488999999999999999954 5777999999999999998763
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC----CCCC-ccccc----cccccCC
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----PPPC-VNYFC----PMHLSEH 275 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~----~~~~~~~ 275 (737)
+....+|...|.|.+|+|. ..+++++|-|.+||+||+...+....-+...+ .... ...|. .....-.
T Consensus 128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 3344567889999999997 47999999999999999976543332222100 0000 00110 0111124
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
||.. .|+-++|+|.-..|++|+.|..|++|.+..
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence 5665 499999999999999999999999998776
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.6e-31 Score=254.46 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=131.4
Q ss_pred CccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004679 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 92 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 171 (737)
-..+|..|.|.|+ |..|++|+..|...+|+.... .....++.|.++|+++.|++ ++.++++|..+|.
T Consensus 95 vkc~V~~v~WtPe--GRRLltgs~SGEFtLWNg~~f----------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 95 VKCPVNVVRWTPE--GRRLLTGSQSGEFTLWNGTSF----------NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGM 161 (464)
T ss_pred cccceeeEEEcCC--CceeEeecccccEEEecCcee----------eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCce
Confidence 3568999999999 899999999999999998642 22456789999999999999 7799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
|++|+..-.. +.... .|...|++++|+|.+ ..|++++.||+|+|||....+.
T Consensus 162 iKyWqpnmnn--------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 162 IKYWQPNMNN--------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKE 214 (464)
T ss_pred EEecccchhh--------------------------hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCch
Confidence 9999977553 11122 244789999999974 7999999999999999987654
Q ss_pred cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
...+ .||.- .|.+++|+|....|++|+.|..|++||.+++.
T Consensus 215 e~vL--------------------~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 215 ERVL--------------------RGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hhee--------------------ccCCC-CcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 3322 22332 59999999999999999999999999999853
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=235.11 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=138.4
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|++.|..+.|+|+ |.+|++|+.|..|.+|++..-. +....+++|++.|..+.|.+ ++..+++++.|
T Consensus 44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gdc---------eN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtD 111 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGDC---------ENFWVLKGHSGAVMELHGMR-DGSHILSCGTD 111 (338)
T ss_pred CCCcceEEEEEECCC--CCeEeecCCcceEEEEeccccc---------cceeeeccccceeEeeeecc-CCCEEEEecCC
Confidence 789999999999998 8999999999999999976321 23567889999999999999 66888899999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
++|+.||+++++. +..+..|...+++++-+.-+..++.+++.|+++++||+|+..
T Consensus 112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 9999999999973 444556778888888666667899999999999999999877
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.++.+. ..+.++++.|..++..+++|+-|+.|++||++.
T Consensus 167 ~~~t~~----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 167 AIKTFE----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hhhccc----------------------cceeEEEEEecccccceeeccccCceeeecccc
Confidence 665542 223599999999999999999999999999886
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-29 Score=227.27 Aligned_cols=202 Identities=17% Similarity=0.236 Sum_probs=159.4
Q ss_pred EEEEEcC-CCCEEEEE-------eCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 54 NAISWNS-KGSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 54 ~~l~~s~-~g~~lasg-------s~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.++.||| -.++||.+ ...|.+.|-++...+-+..+. ..-.+.+..++|+++. .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence 4688999 23334333 236899999996444333331 1346789999999987 889999999999999997
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
..+. .|+..++.|...|.++.|++.....++++|.|++|++|+.....
T Consensus 91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------------------- 138 (311)
T KOG0277|consen 91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------------------- 138 (311)
T ss_pred CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-----------------------
Confidence 6433 56899999999999999999888888999999999999987665
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
.+.++.+|...|...+|+|..++++++++.|+.+++||++.......+ ..|. ..|.+
T Consensus 139 --Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~-~Eil~ 195 (311)
T KOG0277|consen 139 --SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHN-SEILC 195 (311)
T ss_pred --ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eecc-ceeEe
Confidence 345567788999999999999999999999999999999864322222 1133 24999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004679 285 VTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 285 v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.|+. +...|++|+.|+.|++||+++.
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhc
Confidence 99997 6677888888999999999983
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=231.08 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=176.8
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCccceEEEEEeeCC
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------------------~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++. .-.+.++ -.|..+|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR- 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence 45678999999999999999999999999999999872 1245666 689999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004679 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~ 185 (737)
..+|++|+.|++|++||+.....+. -........+|.++.|+| .+.+|+.|....++++||+.+.+...
T Consensus 184 -e~ILiS~srD~tvKlFDfsK~saKr--------A~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv- 252 (430)
T KOG0640|consen 184 -ETILISGSRDNTVKLFDFSKTSAKR--------AFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV- 252 (430)
T ss_pred -hheEEeccCCCeEEEEecccHHHHH--------HHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-
Confidence 6999999999999999998643221 122223567899999999 77899999999999999999876320
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004679 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (737)
.......|...|+++.+++. +++.++++.||.|++||--+.+. ++
T Consensus 253 ---------------------sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC-------------v~ 297 (430)
T KOG0640|consen 253 ---------------------SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC-------------VR 297 (430)
T ss_pred ---------------------ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH-------------HH
Confidence 11233468899999999997 68999999999999999877654 43
Q ss_pred ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004679 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
++. +.|.+..|.+..|..+|+|+++.+.|..|++|.+.++..
T Consensus 298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 332 334455799999999999999999999999999999753
No 47
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4e-29 Score=257.52 Aligned_cols=574 Identities=16% Similarity=0.159 Sum_probs=314.2
Q ss_pred ccccccceeecccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.++-++.+.+..|..+++|++|+++|+++|+|- ....++||++.....+..| ..|+..|+|++|+|. +.++++.+
T Consensus 65 ~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~--~kyvvSVG 141 (1080)
T KOG1408|consen 65 VDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPG--NKYVVSVG 141 (1080)
T ss_pred ccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCC--CcEEEeec
Confidence 455566677778889999999999999999985 5677999999998888899 799999999999999 68988876
Q ss_pred C--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC----CCC-
Q 004679 115 G--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP----PAG- 187 (737)
Q Consensus 115 ~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~----~~~- 187 (737)
. |-.|.+||.+.+. ...-..-...|..++|+. ++.|++|.+ ...|++|.+..++... ..+
T Consensus 142 sQHDMIVnv~dWr~N~-----------~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gR 208 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNS-----------SGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGR 208 (1080)
T ss_pred cccceEEEhhhhhhcc-----------cccccccceeEEEEEEcc-CCceeeeee-eeeEEEEEeeccccccCCccccch
Confidence 5 6778889887532 122233467789999998 667887776 4799999998776321 000
Q ss_pred ----------------CCCCccceEEEe-ccCCceeecc-------CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 188 ----------------SSHQECRNILLD-LRCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 188 ----------------~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
.+.+.|....+. ...|..-... .....+.-.+||+.+. +++++|+.+|.|++|
T Consensus 209 s~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 209 SYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec---ceEEEeeccceeeec
Confidence 000101000010 1111110000 0011233446677764 699999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccc-ccccc---CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee---
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFC-PMHLS---EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM--- 316 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~--- 316 (737)
+..+..-..+++........+.... +.++. ..+... ....+.|+|....|.....|..++|||++..+++.+
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s 364 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS 364 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEeccccccccceee
Confidence 9998887776654443222221111 11111 111111 356788999999999999999999999998665433
Q ss_pred eeecCCCCeeeeeccC-CCCc-cCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccch---------h
Q 004679 317 RYTVGDASKIMSFTPT-LNGL-ELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGI---------E 385 (737)
Q Consensus 317 ~~~~~~~~~~~~~~p~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 385 (737)
+..|...++.+.--|- .... +.-.+.++|..+. .+..-++..... -..+..|..-| .
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----------sD~TIRlW~l~~--ctnn~vyrRNils~~l~ki~y 432 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----------SDGTIRLWDLAF--CTNNQVYRRNILSANLSKIPY 432 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEec----------CCCcEEEeeccc--ccccceeecccchhhhhcCcc
Confidence 4445555555443331 1111 1111222233321 111111111111 00001000000 0
Q ss_pred hhh--hhhhcccCCCCCcchhhhhh----HHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHH
Q 004679 386 ACN--EVLEGHLSGIGPMLRHECLC----IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (737)
Q Consensus 386 ~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (737)
... +++......+.+..-...+. .|+... ..+..++|.+|+...+.+-.- ..+..+ -..+
T Consensus 433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v----Sp~gqhLAsGDr~GnlrVy~L---------q~l~~~-~~~e 498 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV----SPDGQHLASGDRGGNLRVYDL---------QELEYT-CFME 498 (1080)
T ss_pred ccCchhhhhhccCCcccccchhhcCcccceEEEEE----CCCcceecccCccCceEEEEe---------hhhhhh-hhee
Confidence 000 11111100000000000000 000000 011223333443333222100 000000 0001
Q ss_pred HHHHHHHhcc-cCCC--chhhHHHHHHHHhhhhhhhhhcCCC-CCCCCCC--------CCCCcCccccc-c--ccccccc
Q 004679 460 ALDFAIAAQC-LDPS--NSVMAEKVENIKKHIAAAETEKNNK-ANDGGAR--------SEPRTGRVLSL-S--DIIYRSE 524 (737)
Q Consensus 460 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~--------~~~~~~~~~~~-~--~~~~~~~ 524 (737)
|++.....-. .+|. ..-++++..+--+++.++.-...+. ..+|+.. ......++.+- . -++|++.
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 1111110000 0111 1222223333333333333222221 1122110 00000111111 1 1367777
Q ss_pred cCCCCCCCCC---CCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCC
Q 004679 525 ANSDASQDGP---RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQ 601 (737)
Q Consensus 525 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (737)
+++...-.++ .....++.+|.+++..-...+ ..++
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~------------------------------------------t~cQ 616 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV------------------------------------------TVCQ 616 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEE------------------------------------------EEec
Confidence 6554443333 334555666665552222222 2345
Q ss_pred CCCCCCCccccccceEEEeeeccc-ccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCC
Q 004679 602 NDRIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF 680 (737)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~ 680 (737)
++++-+......++++.|+|-.+. +..|... ..|.|.|||+...|++++++|+.+||++.++.||...|+.+.|++|
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~--lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI--LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEE--ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 666666677778899999987665 5555544 7899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCcEEEEcCCC
Q 004679 681 DCVVATSGIDNTIKIWTPSA 700 (737)
Q Consensus 681 ~~~l~S~~~Dg~i~lW~~~~ 700 (737)
.+.|+|++.||+|.||.+.-
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999865
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=251.19 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=217.9
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
+.+.+.+|. .++...++.|.--.-||.+..|-+..+++++|+.|..|+||+..+++.++.| .+|.+.|.|++.+|.
T Consensus 33 ynG~V~IWn--yetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt- 108 (794)
T KOG0276|consen 33 YNGDVQIWN--YETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT- 108 (794)
T ss_pred ecCeeEEEe--cccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence 578899999 5555677888878889999999999999999999999999999999999999 899999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004679 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~ 185 (737)
..++++++.|-+|++||.... +.+.+++.+|...|.+++|.|.+.+.+++++.|++|++|.+....+
T Consensus 109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--- 175 (794)
T KOG0276|consen 109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--- 175 (794)
T ss_pred -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence 689999999999999999852 4557899999999999999999999999999999999999987653
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004679 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (737)
..++.+|...|+|+.+-+.+ .-+|++|++|.+|+|||..+...++++
T Consensus 176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---------- 223 (794)
T KOG0276|consen 176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---------- 223 (794)
T ss_pred ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----------
Confidence 34456789999999998843 238999999999999999987655444
Q ss_pred cccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004679 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
.||.. .|..+.|+|.-..+++|+.||+|+||+..+-+....+....+.+.+++-.+..+.++..-
T Consensus 224 ----------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 224 ----------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ----------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 34544 499999999999999999999999999998766666555666777777777666655543
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.1e-29 Score=232.94 Aligned_cols=205 Identities=23% Similarity=0.466 Sum_probs=169.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-------ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
|.+..+.|..|+|||++|++|+.||-|.|||..+|+..+.++ .-+..+|.|+.|+.+ ...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence 455678899999999999999999999999999987654431 357899999999999 58999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+|.+.++.. ++.+. +|+..|+|+.|+.++ ..+++++.|.++++.-+..++.
T Consensus 289 vWri~tG~C----------lRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~----------------- 340 (508)
T KOG0275|consen 289 VWRIETGQC----------LRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC----------------- 340 (508)
T ss_pred EEEEecchH----------HHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence 999997432 55555 899999999999966 4555999999999999999873
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+..+.+|...|+...|.++ +..+++++.||+|++|+..+.. |+.+|.+.. ..
T Consensus 341 --------LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d 392 (508)
T KOG0275|consen 341 --------LKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD 392 (508)
T ss_pred --------HHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence 5667789999999999997 6899999999999999999875 444443332 23
Q ss_pred cceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 004679 280 LHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 280 ~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+|+++..-| +...++++...++|+|.++.-
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 3688888877 567888998899999988764
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=218.30 Aligned_cols=206 Identities=19% Similarity=0.337 Sum_probs=166.2
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+..... ..+|.+.|-.++|+|.. .++|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 668899999999999999999999999999999999887544332 26899999999999987 8899999999999999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
|++... +........+ -.-+.|+| ++.+++.++.|..|.+.|.++.+..
T Consensus 93 d~r~~k----------~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~------------------- 141 (313)
T KOG1407|consen 93 DIRSGK----------CTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIV------------------- 141 (313)
T ss_pred EeccCc----------EEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEeccccee-------------------
Confidence 999743 2444433333 34589999 5688889999999999999987632
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
........+..++|+-+ +++|+.-...|+|.|......+++..+. .|.. ..
T Consensus 142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si~--------------------AH~s-nC 192 (313)
T KOG1407|consen 142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSIK--------------------AHPS-NC 192 (313)
T ss_pred -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEeccccccccccc--------------------cCCc-ce
Confidence 11123456788889855 4677777778999999999888777663 2443 48
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|+.|+|+|+|+++|+.|..+.+||+..
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhH
Confidence 8999999999999999999999999886
No 51
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=7.8e-29 Score=241.33 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=167.9
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
...+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++ .+..++|+.+.|.++ +..+++++.|+.++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCcee
Confidence 34567899999999999999999999999999999998766 55666 677889999999999 79999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+|++.... ...++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+...+.
T Consensus 245 ~Wnvd~~r----------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l------------- 300 (459)
T KOG0288|consen 245 LWNVDSLR----------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL------------- 300 (459)
T ss_pred eeeccchh----------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-------------
Confidence 99998632 367899999999999998743 448899999999999999865331111
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004679 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
....+..|+.+ +..+++|..|+.||+||.++.......+. ++
T Consensus 301 -------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----------------------gg 342 (459)
T KOG0288|consen 301 -------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPL----------------------GG 342 (459)
T ss_pred -------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEeec----------------------Cc
Confidence 12344555555 35889999999999999998776554421 12
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.|+++..+++|..|++++.|.++.+.|+++.+
T Consensus 343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 59999999999999999999999999999843
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=259.64 Aligned_cols=212 Identities=20% Similarity=0.337 Sum_probs=168.5
Q ss_pred eeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Q 004679 44 RELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---------------------------------------- 82 (737)
Q Consensus 44 ~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~---------------------------------------- 82 (737)
..+. +|.++|++|.||+||+|||+|+.|+.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4456 89999999999999999999999999999987540
Q ss_pred --------------------eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 83 --------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 83 --------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
+.++.| .+|.+.|.++.|+.+ ++|++++.|.+|+||++...+ ++..
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~----------CL~~ 405 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKE----------CLKV 405 (712)
T ss_pred ccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCcc----------eeeE
Confidence 001111 589999999999997 799999999999999998632 3555
Q ss_pred eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004679 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (737)
Q Consensus 143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (737)
| .|.+.|+||+|+|.+.++|++|+.|+.|++|++...+. ..| ..-..-|++++
T Consensus 406 F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-------------v~W-------------~Dl~~lITAvc 458 (712)
T KOG0283|consen 406 F-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-------------VDW-------------NDLRDLITAVC 458 (712)
T ss_pred E-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-------------Eee-------------hhhhhhheeEE
Confidence 5 49999999999999999999999999999999987652 111 11236789999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCC
Q 004679 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGE 301 (737)
Q Consensus 223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg 301 (737)
|.|+ |+..++|+.+|.+++|+....+............. ..... .|+.+.|.| +...|++.+.|.
T Consensus 459 y~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K------------k~~~~-rITG~Q~~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 459 YSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK------------KKQGK-RITGLQFFPGDPDEVLVTSNDS 524 (712)
T ss_pred eccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc------------cccCc-eeeeeEecCCCCCeEEEecCCC
Confidence 9998 79999999999999999998776555432211111 11111 599999998 444689999999
Q ss_pred eEEEEEcCC
Q 004679 302 HVYLMDVNH 310 (737)
Q Consensus 302 ~v~iwd~~~ 310 (737)
.|+|||..+
T Consensus 525 rIRI~d~~~ 533 (712)
T KOG0283|consen 525 RIRIYDGRD 533 (712)
T ss_pred ceEEEeccc
Confidence 999999866
No 53
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.2e-29 Score=246.30 Aligned_cols=262 Identities=31% Similarity=0.501 Sum_probs=213.0
Q ss_pred hhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC
Q 004679 13 DMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 92 (737)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h 92 (737)
+-|.+++++++..+...+..-+..++++...+.|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..+.....|..+|
T Consensus 105 ~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH 184 (559)
T KOG1334|consen 105 TALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH 184 (559)
T ss_pred hHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccccc
Confidence 35778888888888888888888899999999999999999999999999999999999999999999999988888899
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 172 (737)
...|.--+|-|.++..-+++++.||.+++=.+..... .+....+..|.++|..++..|..+..|.+++.|+.+
T Consensus 185 ~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v 257 (559)
T KOG1334|consen 185 CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV 257 (559)
T ss_pred ccchhhhhccCCCCCcCceeccccCceeeeeeccccc-------eecceecccccCccceeeecCCCCCcccccccccce
Confidence 9999999999988667899999999999877664222 122456678999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004679 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (737)
.-+|++...+..... . ..........+..++.+|.+.+.+++++.|..+++||.+......
T Consensus 258 ~~~Dlr~~~pa~~~~-----------c--------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 258 FHIDLRQDVPAEKFV-----------C--------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred eeeeeccCCccceee-----------e--------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 999999876431110 0 000001124678899999888899999999999999998654321
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
. ...+..|++.++....+. .|++++|+.++.-|+++..|-.|++|+-.
T Consensus 319 ~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 319 N-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred c-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEeccc
Confidence 1 134678888888773333 59999999999999999999999999433
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=232.74 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=142.6
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|.+.|.|+++.|. ...|++|+.|++|+|||+.++.. ..++.+|-..|..+++++.. .|+++++.|
T Consensus 148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~L----------kltltGhi~~vr~vavS~rH-pYlFs~ged 214 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQL----------KLTLTGHIETVRGVAVSKRH-PYLFSAGED 214 (460)
T ss_pred hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeE----------EEeecchhheeeeeeecccC-ceEEEecCC
Confidence 789999999999998 68999999999999999997432 56788899999999999955 688899999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+.|+.||+...+. +....+|-..|.+++.+|.. ..|++|+.|.++|+||+|+..
T Consensus 215 k~VKCwDLe~nkv-------------------------IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 215 KQVKCWDLEYNKV-------------------------IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred CeeEEEechhhhh-------------------------HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccc
Confidence 9999999998763 55566888999999999984 899999999999999999987
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+..+ .||.. +|.++.+.|....+++|+.|++|++||+..++
T Consensus 269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 76655 34554 69999999988889999999999999998753
No 55
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=247.36 Aligned_cols=257 Identities=15% Similarity=0.202 Sum_probs=193.1
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
.+++|-+.. ++..+.+.+|+.-.++|+.++|.-||+ .||+|+..|.+.+||++..+.+..+...|.+.|....|.|.
T Consensus 222 ~~G~ViifN--lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 222 ENGTVIIFN--LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred cCceEEEEE--cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence 456666665 677788888985569999999999986 67888888999999999999888886789999999999998
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004679 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (737)
Q Consensus 105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~ 184 (737)
...+++++.|..+++|=...+++.. ..++.-.+|..+..|++|.-.+++.+.+++.|++.+.+++.......
T Consensus 300 --epVl~ta~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 300 --EPVLVTAGADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred --CceEeeccCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 6899999999999999887666542 44677789999999999997788999999999999998864322110
Q ss_pred CCC-----------------------------------------CCC-CccceEEEeccCCceeec----cCCCCCccce
Q 004679 185 PAG-----------------------------------------SSH-QECRNILLDLRCGAKRSL----ADPPKQTLSL 218 (737)
Q Consensus 185 ~~~-----------------------------------------~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 218 (737)
... ..| .......|.++....... ..+......+
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 000 000 111122233333222111 1112234678
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe
Q 004679 219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (737)
Q Consensus 219 ~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~ 298 (737)
++++.++. |++.+.|...|.|-+|++.++-....+... ..|. .+|+.++...-++.+++++
T Consensus 452 ~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------~ah~-~~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 452 TAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------PAHK-GEVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred EEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccC-----------------cccc-CceeEEEecCCCceEEEcc
Confidence 89999996 689999999999999999988655444210 1133 3699999999999999999
Q ss_pred CCCeEEEEEcCCC
Q 004679 299 SGEHVYLMDVNHA 311 (737)
Q Consensus 299 ~dg~v~iwd~~~~ 311 (737)
.+|.+.+||..+.
T Consensus 513 ~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 513 ADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEecCCc
Confidence 9999999999984
No 56
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.2e-27 Score=245.11 Aligned_cols=289 Identities=16% Similarity=0.153 Sum_probs=189.4
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEE
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~---~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~ 98 (737)
-+.+..|.+++.. +.....++.||..+|+|+.|-|..+ ++++|+.|+.|++|.++... ++..+ .+|...+.|
T Consensus 30 fGa~~~Iav~dp~--k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~c 106 (764)
T KOG1063|consen 30 FGAGPAIAVADPE--KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVC 106 (764)
T ss_pred ecCCceEEEeCcc--cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEE
Confidence 3556777777733 2245678899999999999999877 89999999999999998433 44555 455555544
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----------------------------------------CCCCCC
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----------------------------------------DDNAIT 138 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----------------------------------------~~~~~~ 138 (737)
+... .....+...|+++.+||.+..+--+. ....+.
T Consensus 107 --v~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~ 182 (764)
T KOG1063|consen 107 --VVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFA 182 (764)
T ss_pred --EEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCccee
Confidence 4443 12222237899999999954220000 111234
Q ss_pred CceeeccCCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCC----CCCCccceEEEeccCCceeec---c
Q 004679 139 PSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAG----SSHQECRNILLDLRCGAKRSL---A 209 (737)
Q Consensus 139 ~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~ 209 (737)
.+..+.+|.+.|.+++|....+ .+|+++|.|..|++|.+.-........ .........+..... -...+ .
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~-i~~~is~ea 261 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE-IQYRISFEA 261 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee-EEEEEehhh
Confidence 4567889999999999986444 488999999999999986554221000 000000000000000 00011 1
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
-..+|+..|+++.|+|. +..|++++.|.++.+|......-+-. ....+.+.++.........|+|
T Consensus 262 ll~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv--------------~~vRlGe~gg~a~GF~g~lw~~ 326 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWV--------------DVVRLGEVGGSAGGFWGGLWSP 326 (764)
T ss_pred hhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEE--------------EEEEeecccccccceeeEEEcC
Confidence 23489999999999997 47899999999999997764321111 1111222334444588899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC---cceeeeecCCCCeeeeeccCCCC
Q 004679 290 NGEEVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
++..+++-+..|..++|-..... ......+|-..++.+.|.|.+.-
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef 375 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF 375 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE
Confidence 99999999999999999844322 34455677888999999998653
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=234.22 Aligned_cols=220 Identities=18% Similarity=0.297 Sum_probs=188.6
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004679 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
.++.-+.+|++|| .+.....+.|.||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++ ..|...|..+.|
T Consensus 211 VSGlrDnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf 285 (499)
T KOG0281|consen 211 VSGLRDNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRF 285 (499)
T ss_pred hcccccCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEE
Confidence 3456688999999 67788899999999999999985 469999999999999999999999998 799999999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
+. .++++++.|.++.+||+..+.. ......+.+|...|+.+.|+. +++++++.|++|++|++.+.+
T Consensus 286 ~n----g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 286 SN----GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred eC----CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEecccee
Confidence 86 4899999999999999987543 233577889999999999953 699999999999999999886
Q ss_pred CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004679 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (737)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (737)
. +....+|...|.|+++. ++++++|+.|.+|++||+..+..+..+
T Consensus 352 f-------------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvL------- 396 (499)
T KOG0281|consen 352 F-------------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL------- 396 (499)
T ss_pred e-------------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHH-------
Confidence 3 34455777888888775 579999999999999999988755544
Q ss_pred CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.||.. -|.++.| |.+.+++|+.||+|++||+..+
T Consensus 397 -------------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 397 -------------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -------------hchHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence 44555 4899999 6678999999999999999985
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.9e-26 Score=269.46 Aligned_cols=188 Identities=15% Similarity=0.240 Sum_probs=142.9
Q ss_pred CCcEEEEECCCCeEEEEEc----ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC
Q 004679 71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h 146 (737)
+|.+++|+.........+. ..|...|.+++|+|+ +++|++|+.|+.|+||++........ ....+...+. +
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence 6778999988766544432 348899999999999 79999999999999999864211000 0001223333 3
Q ss_pred CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 147 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
...+.+++|++..+.+|++++.||+|++||+.+++. +.....|...|++++|+|.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence 567999999986678999999999999999987642 2233467889999999986
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-CCCCEEEEEeCCCeEEE
Q 004679 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL 305 (737)
Q Consensus 227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~l~~g~~dg~v~i 305 (737)
++.+|++|+.|+.|++||++++..+..+. .+ ..+.++.|+ ++|.+|++|+.||.|++
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------------~~--~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIK--------------------TK--ANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------cC--CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 57899999999999999998765443321 11 148899995 57999999999999999
Q ss_pred EEcCC
Q 004679 306 MDVNH 310 (737)
Q Consensus 306 wd~~~ 310 (737)
||+.+
T Consensus 645 wD~~~ 649 (793)
T PLN00181 645 YDLRN 649 (793)
T ss_pred EECCC
Confidence 99876
No 59
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.9e-27 Score=234.01 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=214.5
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004679 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
..+..++.+++|+ ....++.+|..|+++|.+|.|+..|.+|++++.|+++.|||..+++..+.| ..|..+-.+|.|
T Consensus 251 atG~~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW 326 (524)
T KOG0273|consen 251 ATGSEDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDW 326 (524)
T ss_pred EEeecCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEE
Confidence 3466788899998 456778899999999999999999999999999999999999999998888 789888899999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
-.+ +-|++++.|+.|+++.+... .|..++.+|.++|.++.|+| .+.+|++++.|+++++|......
T Consensus 327 ~~~---~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 327 QSN---DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred ecC---ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc
Confidence 987 78999999999999999852 45888999999999999999 56899999999999999987765
Q ss_pred CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--------CcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
. +..+..|...|..+.|+|.+ +..+++++.|++|++||+..+.++..
T Consensus 393 ~-------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 393 S-------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred c-------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 2 33445677788888888763 45799999999999999999987776
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004679 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
+. .|.. +|.+++|+|+|+|+++|+.||.|.+|+.++++ ....+..+..+..++|+-.+
T Consensus 448 f~--------------------kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 448 LM--------------------KHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred ec--------------------cCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCC
Confidence 53 2333 69999999999999999999999999999965 45555556668889999887
Q ss_pred CCccCC
Q 004679 334 NGLELQ 339 (737)
Q Consensus 334 ~~~~~~ 339 (737)
..+...
T Consensus 506 ~kl~~~ 511 (524)
T KOG0273|consen 506 DKLGAC 511 (524)
T ss_pred CEEEEE
Confidence 655443
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=252.23 Aligned_cols=162 Identities=11% Similarity=0.172 Sum_probs=139.9
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
......|..++|+|. ...++++-..|.|.+||.+-.. .+..+..|.++|..+.|+| ...++++|+.|
T Consensus 6 EskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~t----------li~rFdeHdGpVRgv~FH~-~qplFVSGGDD 72 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGT----------LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDD 72 (1202)
T ss_pred hcccccccceecCCC--CCEEEEeecCceeeeehhhhhh----------HHhhhhccCCccceeeecC-CCCeEEecCCc
Confidence 456788999999999 6899999999999999998532 3778899999999999999 55799999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
-.|++|+..+.+ .+.+..+|-..|..+.|++.- -+++++|+|.+||||+..+.+
T Consensus 73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred cEEEEEecccce-------------------------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc
Confidence 999999998865 355667888999999999975 599999999999999999887
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+..+ .||.. .|.|..|+|....+++++-|.+|+|||+.-.
T Consensus 127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecch
Confidence 65544 33444 4999999999999999999999999999864
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.1e-27 Score=253.30 Aligned_cols=165 Identities=22% Similarity=0.375 Sum_probs=138.8
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004679 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
.+...|.++.|+|+ |..+++++.|+.+++|+...... .....+.+|...|.+++|+| ++.++++++.|+
T Consensus 157 ~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDK 225 (456)
T ss_pred cccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECC-CCcEEEEecCCc
Confidence 34788999999999 79999999999999999954221 12455688999999999999 668999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
+|++||+.... ..+....+|...|++++|+|.+ +++++|+.|++|+|||+++++.
T Consensus 226 tiriwd~~~~~------------------------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 226 TLRIWDLKDDG------------------------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred eEEEeeccCCC------------------------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence 99999994442 1244556889999999999985 9999999999999999999776
Q ss_pred cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+..+ .+|.. .|++++|++++.+|++++.|+.|++||+.++.
T Consensus 281 ~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 281 VRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred EEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 5554 33554 69999999999999999999999999999854
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7e-27 Score=233.33 Aligned_cols=234 Identities=18% Similarity=0.244 Sum_probs=176.3
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
.....|++|+..|.++++.|.|-+|++|+.|..|++||+.... ..+.+.......|.+++|++. ++.|++.+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecC
Confidence 4456788999999999999999999999999999999998643 334444566788999999999 6888888888
Q ss_pred CcEEEEecCCCCCCC--CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 117 AEVRLFNLSRFSGRG--LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 117 g~I~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
...+|+|-.-..... ....++.-+...++|...++|.+|+|.+...++|++.||++++||+...+...
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~---------- 305 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL---------- 305 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe----------
Confidence 889999865322111 11222334566789999999999999998999999999999999999876331
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
.++.. ....+....++.|+|+|+ +.+||+|+.||.|.+|+.+.......+ .....|.
T Consensus 306 qVik~---------k~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~-----------~vk~AH~-- 362 (641)
T KOG0772|consen 306 QVIKT---------KPAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVM-----------KVKDAHL-- 362 (641)
T ss_pred eEEee---------ccCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccce-----------EeeeccC--
Confidence 11111 111134567899999998 589999999999999998654321111 1111111
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+..|++|+||++|++|++-+.|+.+++||++..+
T Consensus 363 ---~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 363 ---PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ---CCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 11249999999999999999999999999999854
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=211.50 Aligned_cols=230 Identities=15% Similarity=0.226 Sum_probs=188.3
Q ss_pred cCCCCCccccccccccc-ccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccc
Q 004679 20 TDTRPDVNHSLQMHSSL-VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSAN 95 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~ 95 (737)
+..+.+.++.|++|+.. ..+......|. +|+..|.+++|+|.|++||+|+.|.++.||.-..+ +++.++ .+|...
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnE 107 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENE 107 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccc
Confidence 45667889999999965 45566666664 69999999999999999999999999999987654 577778 899999
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
|.|++|+++ |++||+|+.|..|-||.+.... .+++...+..|+..|..+.|+| ...+|+++++|.+|++|
T Consensus 108 VK~Vaws~s--G~~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 108 VKCVAWSAS--GNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeEEEEcCC--CCEEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEE
Confidence 999999999 8999999999999999998432 2567889999999999999999 66899999999999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004679 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
.-.... .-..+....+|...|.+++|++. +..|++++.|++++||-+.+.-+
T Consensus 178 ~~~~dd----------------------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~----- 229 (312)
T KOG0645|consen 178 RDEDDD----------------------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS----- 229 (312)
T ss_pred eecCCC----------------------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc-----
Confidence 866321 11224445567789999999997 58999999999999998653210
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
..|.. .+..++|. ...|++++.|+.|++|.-..
T Consensus 230 -------------------~~~sr-~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 230 -------------------GMHSR-ALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -------------------hhccc-ceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 11222 58889998 45699999999999997553
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=248.29 Aligned_cols=195 Identities=22% Similarity=0.338 Sum_probs=166.5
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
|...+.+..|+ ..++++++.|.+|.+||..++..+.. + .+|.+.|.++++... +.+|++|+.|.++++||..++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEeEecCCC
Confidence 56678888888 67899999999999999999998888 7 899999999999985 689999999999999998763
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++..
T Consensus 282 ----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~------------------------- 323 (537)
T KOG0274|consen 282 ----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC------------------------- 323 (537)
T ss_pred ----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce-------------------------
Confidence 33788999999999999854 6788999999999999997763
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
+....+|..+|.++..+ +.++++|+.|+.|++||+.+++.++.+ .+|.. .|.++.+
T Consensus 324 l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~V~sl~~ 379 (537)
T KOG0274|consen 324 LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-RVYSLIV 379 (537)
T ss_pred EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-eEEEEEe
Confidence 22233478899999998 369999999999999999988766554 34544 6999988
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 288 SPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+. .++++|+.|+.|++||+.+.
T Consensus 380 ~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 380 DSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cCc-ceEEeeeeccceEeecCCch
Confidence 776 88999999999999999883
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=210.13 Aligned_cols=256 Identities=21% Similarity=0.260 Sum_probs=216.4
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
-+.++++++|. ..+..+++++.||...|..++.+.|...+++|+.|..|.+||+.+|+.+..| .+|...|+.++|+.
T Consensus 35 cGsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe 111 (307)
T KOG0316|consen 35 CGSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE 111 (307)
T ss_pred cCCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecC
Confidence 45688999999 6678899999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ ...+++|+.|.++++||.+... .+|++.+..-.+.|.++... .+.|++|+.||+++.||++.+...
T Consensus 112 e--sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 112 E--SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred c--ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceee
Confidence 8 5899999999999999999744 46789998889999999984 478999999999999999998733
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
. . -...+|++++|+++ ++..++++.|+++++.|..+++.+..+...
T Consensus 179 s-------------------------D--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sYkGh------ 224 (307)
T KOG0316|consen 179 S-------------------------D--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSYKGH------ 224 (307)
T ss_pred h-------------------------h--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHhccc------
Confidence 1 0 12357999999997 689999999999999999999877665321
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC-CeeeeeccCCCCccCCCCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~ 342 (737)
.... .-..+++......+++|+.||.|++||+........+..++.+ +..+.++|....+-.....
T Consensus 225 ------------kn~e-ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 225 ------------KNME-YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ------------ccce-eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 1111 2456778888899999999999999999998777666666666 7889999987665544433
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=5.7e-26 Score=218.34 Aligned_cols=245 Identities=13% Similarity=0.147 Sum_probs=188.9
Q ss_pred ccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004679 17 TRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (737)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V 96 (737)
..-+..+++.+..--+|+ +.+.....++.||+..|+|+.|+.+|.+||||+.+|.|+||...++.....+ ......|
T Consensus 75 ~~~l~aTGGgDD~AflW~--~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~di 151 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWD--ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDI 151 (399)
T ss_pred CCceEEecCCCceEEEEE--ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCce
Confidence 444566677777888899 5666689999999999999999999999999999999999999999988888 4456778
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
.=+.|+|. +.+|+.|+.||.+.+|.+... ...+.+.+|..++++-.|.| +++.++++..||+|++||
T Consensus 152 eWl~WHp~--a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 152 EWLKWHPR--AHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWN 218 (399)
T ss_pred EEEEeccc--ccEEEeecCCCcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEe
Confidence 88999998 799999999999999999863 12678999999999999999 568888999999999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004679 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (737)
+.++.+...+ ... ......++.++.. +..++.|+.++.+++-+..+++.+.....
T Consensus 219 ~ktg~p~~~~----------------------~~~--e~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 219 PKTGQPLHKI----------------------TQA--EGLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cCCCceeEEe----------------------ccc--ccCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC
Confidence 9998754111 000 0234566777775 67899999999999988887775543321
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
. .+.-...+.+....|..+.|+..-.+.++|+-||+|-|||+.+..
T Consensus 274 ~----------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 274 T----------VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred C----------CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0 011111122222235555666677888999999999999999854
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-25 Score=203.00 Aligned_cols=239 Identities=20% Similarity=0.323 Sum_probs=190.3
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
-|+||..+++.+.++.+|.+|++|+.|.++.||-..+|+.+.++ .+|.+.|+|+....+ ...+++|+.|.+++|||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999999999999999 899999999999998 589999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.++.. +..++ -..+|..+.|++ ++++++.+. ..+.|.++|++..... ....+
T Consensus 82 ~tGk~----------la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~e------- 138 (327)
T KOG0643|consen 82 ETGKQ----------LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEE------- 138 (327)
T ss_pred CCCcE----------EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----hcccC-------
Confidence 97542 44444 567899999999 556665554 3467999999865411 00000
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
.+...+.+...++.+-|.|. +..|++|..||.|.+||++++..+.... ..|..
T Consensus 139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~ 191 (327)
T KOG0643|consen 139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS 191 (327)
T ss_pred -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence 01111223467899999997 5899999999999999999875432211 11333
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
.|+.+.++||..++++++.|.+.++||+.+. ...+.+....|++..+++|....+.+
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVIL 248 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeeccce-eeEEEeeecccccceecccccceEEe
Confidence 5999999999999999999999999999995 46677788899999999997654433
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=3.7e-25 Score=226.75 Aligned_cols=164 Identities=24% Similarity=0.393 Sum_probs=131.6
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
..+ .+|..+|.+++|+|+ +.+|++++.||.|++|++.... ....+..|...+..+.|+| ++.++++
T Consensus 3 ~~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~-~~~~l~~ 68 (289)
T cd00200 3 RTL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGE----------LLRTLKGHTGPVRDVAASA-DGTYLAS 68 (289)
T ss_pred hHh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCC----------cEEEEecCCcceeEEEECC-CCCEEEE
Confidence 345 589999999999999 7999999999999999998532 2566778889999999999 4578999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
++.|+.|++||+...+.. .....+...+.++.|+|+ +.++++++.|+.|++||+
T Consensus 69 ~~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 69 GSSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EcCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence 999999999999875422 112245567999999997 578888888999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++.+....+. .+.. .|.+++|+|++.++++++.++.|++||+.+
T Consensus 123 ~~~~~~~~~~--------------------~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 123 ETGKCLTTLR--------------------GHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CCcEEEEEec--------------------cCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 8665443321 1222 599999999999888888899999999875
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.9e-24 Score=189.91 Aligned_cols=223 Identities=17% Similarity=0.314 Sum_probs=159.3
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------C--------eEEEEEcccCccceEEEEEeeC
Q 004679 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------~--------~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
.++.+.+|. .+.+|.+++|+|.|.+.|.|+..++++|--... + ..+.+-.+.|.+.|.|.+|+|.
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 345555554 567899999999999999999999999865421 1 1122222568999999999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCcEEEEEeC-CCcEEEEEcCCC
Q 004679 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE-DGTLRQHDFRQG 180 (737)
Q Consensus 105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s~-Dg~I~vwdl~~~ 180 (737)
|.++++|+.|.+|++..++....... -+-..+.-|.+.|..++|..+ ++.+|++++. |..|.+-|...+
T Consensus 101 --geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 101 --GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 89999999999999988875433221 223456779999999999642 3457777654 566666666665
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE-EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (737)
+. +....+|.+.|.++ .|+ +-++++|+.|.+||+||++-...+..+...
T Consensus 174 ~~-------------------------~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~-- 223 (350)
T KOG0641|consen 174 QG-------------------------FHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND-- 223 (350)
T ss_pred Cc-------------------------ceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence 52 22334556666554 343 579999999999999999976544333211
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....|-....|..++..|.|++|++|-.|....+||++-+
T Consensus 224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 1112222336999999999999999999999999998863
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.6e-26 Score=245.51 Aligned_cols=242 Identities=15% Similarity=0.215 Sum_probs=192.1
Q ss_pred eccc-CCceEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CeEEEEEcccCccceEEEEEeeCCCCCEE
Q 004679 46 LEGH-QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV 110 (737)
Q Consensus 46 l~~H-~~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l 110 (737)
+-+| ...|.+++.+|+|..+|||+ .|+.++||+.+. .+.+.+. ..|.+.|+|+.|+|+ |.+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l 84 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL 84 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence 4445 45799999999999999999 899999998752 2234445 679999999999999 8999
Q ss_pred EEEECCCcEEEEecCCC-C-------CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 111 VSGAGDAEVRLFNLSRF-S-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 111 ~sgs~dg~I~iwd~~~~-~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
|+|+.|+.|.||..... . +...+...++....+.+|...|..+.|+| ++.+|++++.|++|.+|+.++.+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee
Confidence 99999999999998830 0 11122334566788899999999999999 679999999999999999998742
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
+....+|...|..+.|+|- +++||+-++|++|+||++.+....+.+..++...
T Consensus 164 -------------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~- 216 (942)
T KOG0973|consen 164 -------------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES- 216 (942)
T ss_pred -------------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhC-
Confidence 4445678889999999997 6999999999999999987755444443222110
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
.-...+..+.|||||.+|++... -.++.|.+-.+.+....+.+|..++.++.|+|.
T Consensus 217 --------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 217 --------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred --------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 00113888999999999999866 347888888877777888889889999999994
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=223.80 Aligned_cols=200 Identities=18% Similarity=0.307 Sum_probs=166.0
Q ss_pred CCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 50 QGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 50 ~~~V~~l~~s~~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
..+|.+++|+|... +.+|+| -.+.||+..+....+++ ......|.++.|-.| |.+|++|...|.|+|||+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence 36899999999543 333444 47999999988888777 567889999999999 899999999999999996641
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
..+..+.+|+.++..+.|+|++...|++|+.|+.+++||+.+.. .
T Consensus 101 ----------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v 145 (487)
T KOG0310|consen 101 ----------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------V 145 (487)
T ss_pred ----------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------E
Confidence 23788899999999999999998999999999999999998864 1
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.....+|+..|.|.+|+|.++.++++|+.||.||+||++.. ..+.++ .++.+|.++.
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------------nhg~pVe~vl 203 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------------NHGCPVESVL 203 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------cCCCceeeEE
Confidence 33445789999999999988889999999999999999976 333222 2333699999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 287 FSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+-|.|..|+++++. .|++||+.++.
T Consensus 204 ~lpsgs~iasAgGn-~vkVWDl~~G~ 228 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN-SVKVWDLTTGG 228 (487)
T ss_pred EcCCCCEEEEcCCC-eEEEEEecCCc
Confidence 99999988888776 99999999864
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.9e-25 Score=228.28 Aligned_cols=194 Identities=18% Similarity=0.284 Sum_probs=156.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004679 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 134 (737)
=+.|+ ..+.||.|.. ..|.+|+..+++..... ..+...|+++.|+++ |.+|+.|..+|.|.|||......
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k~----- 251 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQKK----- 251 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhccc-----
Confidence 35677 4456776654 48999999998866555 445899999999999 89999999999999999986332
Q ss_pred CCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004679 135 NAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 135 ~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
+..+.. |...|.+++|. ...+.+|+.|+.|..+|++..+.. +.....
T Consensus 252 -----~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~------------------------~~~~~~ 299 (484)
T KOG0305|consen 252 -----TRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV------------------------VSTLQG 299 (484)
T ss_pred -----cccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh------------------------hhhhhc
Confidence 566666 99999999996 478889999999999999988643 112456
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCC
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGE 292 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~ 292 (737)
|...|..++|+++ +.++|+|+.|+.+.|||.....+...+ ..|.. .|..++|+| ...
T Consensus 300 H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~~ 357 (484)
T KOG0305|consen 300 HRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQSG 357 (484)
T ss_pred ccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCccC
Confidence 8899999999998 689999999999999999665544333 22443 699999999 567
Q ss_pred EEEEEeC--CCeEEEEEcCCCC
Q 004679 293 EVLLSYS--GEHVYLMDVNHAG 312 (737)
Q Consensus 293 ~l~~g~~--dg~v~iwd~~~~~ 312 (737)
.||+|++ |++|++||..++.
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCc
Confidence 7888876 9999999999854
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-26 Score=211.29 Aligned_cols=228 Identities=18% Similarity=0.279 Sum_probs=194.9
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
..-++++++|+ +....+++..++.|...|.++.|++ +++.+++++.|++|++|+......+.+| .+|...|...+|+
T Consensus 79 a~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 79 ASGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFS 156 (311)
T ss_pred EecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecC
Confidence 44579999999 7777789999999999999999999 6677888899999999999999999999 8999999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
|.. +++|++++.|+.+++||++.... ...+..|...|.|+.|+.-+.++++||+.|+.|++||++.-+.
T Consensus 157 p~~-~nlfas~Sgd~~l~lwdvr~~gk----------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 157 PHI-PNLFASASGDGTLRLWDVRSPGK----------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred CCC-CCeEEEccCCceEEEEEecCCCc----------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence 987 89999999999999999987532 2347889999999999998989999999999999999998763
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
+ +....+|...|..++|+|....+|++++.|-++||||.........
T Consensus 226 p------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--------- 272 (311)
T KOG0277|consen 226 P------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--------- 272 (311)
T ss_pred c------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh---------
Confidence 3 4455678899999999999888999999999999999875432111
Q ss_pred CccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~ 308 (737)
. ..++..-+..+.|++ ++.+++..+-|+.++||+.
T Consensus 273 ---~--------~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 ---T--------VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ---h--------hhccceEEeccccccccCceeeecccccceeeecc
Confidence 1 112222478899997 6778999999999999984
No 74
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=204.67 Aligned_cols=202 Identities=11% Similarity=0.168 Sum_probs=155.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 132 (737)
-.|+.|++.|.+||.|..||.|.|||+.+...-..+ .+|..+|++++|+++ |.+|++++.|..|.+||+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs~--- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGSP--- 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCCc---
Confidence 689999999999999999999999999998766666 899999999999999 89999999999999999997542
Q ss_pred CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004679 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (737)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (737)
++.+. ..++|+.+.|+|.+.+..+++-.+..-.+-++...... ......+ ...
T Consensus 100 -------l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d-------------~dl---- 152 (405)
T KOG1273|consen 100 -------LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDD-------------GDL---- 152 (405)
T ss_pred -------eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCc-------------ccc----
Confidence 44443 57899999999987777777766666666666653311 0000000 000
Q ss_pred CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004679 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (737)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~ 292 (737)
.....+..|.+. |+++++|...|.+.++|..+.+.+..+... ....|..+.|+..|+
T Consensus 153 --n~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 153 --NSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR 209 (405)
T ss_pred --ccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence 011112246664 799999999999999999988765554211 111488999999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 004679 293 EVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 293 ~l~~g~~dg~v~iwd~~~ 310 (737)
+|++.+.|..|+.|+++.
T Consensus 210 ~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecCCceEEEEehhh
Confidence 999999999999999885
No 75
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.1e-24 Score=233.10 Aligned_cols=230 Identities=17% Similarity=0.291 Sum_probs=175.1
Q ss_pred eeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-------EEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004679 44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
..+.||.+.|++++|+| ++++||+|+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +++|++|+.
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~ 146 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA 146 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence 35889999999999999 88999999999999999997652 45566 7899999999999984 579999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|++|+|||+.... ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+
T Consensus 147 DgtVrIWDl~tg~----------~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------ 203 (493)
T PTZ00421 147 DMVVNVWDVERGK----------AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------ 203 (493)
T ss_pred CCEEEEEECCCCe----------EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence 9999999998632 2567788999999999999 6689999999999999999987532
Q ss_pred EEEeccCCceeeccCCCCCcc-ceEEEEEecCCCcEEEEEe----CCCcEEEEECCCCCC-cccccCCCCCCCCcccccc
Q 004679 196 ILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~t~s----~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 269 (737)
.....|.. ....+.|.++. ..+++++ .|+.|++||++.... +...
T Consensus 204 -------------~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~--------------- 254 (493)
T PTZ00421 204 -------------SSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTV--------------- 254 (493)
T ss_pred -------------EEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEe---------------
Confidence 11112222 23456788865 4555543 479999999986542 1111
Q ss_pred ccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee-eecCCCCeeeeeccC
Q 004679 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT 332 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~p~ 332 (737)
..+....+....|++++.+|++++ .|+.|++||+.++...... +....+...++|.|.
T Consensus 255 -----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 -----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred -----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 001112366678999999999888 4999999999987643332 334567788888885
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=204.38 Aligned_cols=208 Identities=21% Similarity=0.347 Sum_probs=166.1
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
-++.+...+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+ ..|.+.|+++.|.+..+.+.|++|+.||
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCC
Confidence 3456678899999999999974 899999999999999999999988888 6899999999999985445899999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.|.+|+... +..+..+++|...|+.++++| .+++.++.+.|+.++.||+-.++.. .+
T Consensus 108 ~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a------------~v 164 (362)
T KOG0294|consen 108 HIIIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA------------FV 164 (362)
T ss_pred cEEEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc------------ee
Confidence 999999986 456889999999999999999 6688889999999999999988632 01
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
.. + ......+.|+|. +.+|+.++.+ .|-+|.+.+.+.+..+..
T Consensus 165 ~~--------L------~~~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~--------------------- 207 (362)
T KOG0294|consen 165 LN--------L------KNKATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN--------------------- 207 (362)
T ss_pred ec--------c------CCcceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc---------------------
Confidence 10 0 122344899997 5777777764 588999887665443321
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
...+.++.|- ++.+|++|..|+.|.+||..+
T Consensus 208 -~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 208 -PKRILCATFL-DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred -cccceeeeec-CCceEEEecCCceEEEeccCC
Confidence 0136666665 566799999999999999775
No 77
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=6.1e-24 Score=229.60 Aligned_cols=210 Identities=15% Similarity=0.123 Sum_probs=159.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------EEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
..|+....++++..+++++.+.....|+...+..+. .+ .+|.+.|.+++|+|.. +.+|++|+.|+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASEDG 98 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeCCC
Confidence 456666677777777888777777788765543221 23 6899999999999932 68999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
+|++||+...... .....++..+.+|...|.+++|+|...++|++++.|++|++||++++...
T Consensus 99 tIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-------------- 161 (493)
T PTZ00421 99 TIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-------------- 161 (493)
T ss_pred EEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE--------------
Confidence 9999999753210 01123467788999999999999966689999999999999999876521
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
.....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+ .+|
T Consensus 162 -----------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~~H 209 (493)
T PTZ00421 162 -----------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------EAH 209 (493)
T ss_pred -----------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------ecC
Confidence 122346678999999997 689999999999999999987654433 123
Q ss_pred cccceeEEEEcCCCCEEEEEe----CCCeEEEEEcCCC
Q 004679 278 SSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHA 311 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~----~dg~v~iwd~~~~ 311 (737)
....+..+.|.+++..+++++ .|+.|++||+++.
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 332355788999888887765 3789999998863
No 78
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=7.5e-25 Score=224.44 Aligned_cols=230 Identities=18% Similarity=0.235 Sum_probs=157.3
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEE------EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 55 AISWNS---KGSLLISGSDDTHINVWSYSSRKLL------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 55 ~l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
+..|++ ....|+.+..||.|.++|....... ..+ ..|...|..++|.|. ..+|++++.|.++++||+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCceeeeeeec
Confidence 366765 3458999999999999998754322 333 689999999999996 7899999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC--
Q 004679 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG-- 203 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 203 (737)
...... ...+.+|...|.+++|.|.++..|++|+.||.|.+||++....-. ....+. .++...++
T Consensus 131 ~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~~-~~~~~~n~~p 197 (720)
T KOG0321|consen 131 TSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFDN-RIYGRHNTAP 197 (720)
T ss_pred cceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHhh-hhhccccCCC
Confidence 754322 345789999999999999999999999999999999998765110 000011 11111111
Q ss_pred -----ceeeccCCCCCccceEE---EEEecCCCcEEEEEeC-CCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 204 -----AKRSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 204 -----~~~~~~~~~~~~~~v~~---i~~sp~~~~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
....+.....+...|.+ +-+..| ...||+++. |+.|+|||++...-...... .....+..
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep-----~~~~~~~t----- 266 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP-----RGSDKYPT----- 266 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCC-----CcccCccC-----
Confidence 01112222223333333 334444 478898887 99999999997653332211 11111100
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+......++++..+..|.+|++.+.|+.|++||+.+-
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 1112224889999999999999999999999999873
No 79
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=228.66 Aligned_cols=253 Identities=16% Similarity=0.203 Sum_probs=189.1
Q ss_pred CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004679 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
..++.+++|. +++.+.+++++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.+|. ...+.|++++|..|
T Consensus 179 s~~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 179 SSQGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTD 255 (910)
T ss_pred ecCCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccC
Confidence 4467888988 88899999999999999999999988999999999999999999999999994 22599999999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004679 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (737)
Q Consensus 105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~ 184 (737)
+ ..++++|+..|.+.+||+...... ......|.+.|....|.| +..++++++.|.++++|=..++.
T Consensus 256 G-~p~las~~~~G~m~~wDLe~kkl~---------~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d--- 321 (910)
T KOG1539|consen 256 G-NPLLASGRSNGDMAFWDLEKKKLI---------NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD--- 321 (910)
T ss_pred C-CeeEEeccCCceEEEEEcCCCeee---------eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC---
Confidence 6 567888888999999999863221 233447889999999999 77899999999999999777554
Q ss_pred CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC--------
Q 004679 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK-------- 256 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~-------- 256 (737)
+..+.+..-.+|..+..++.|...++..+.+++.|++++.+++.....-+++..
T Consensus 322 ------------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 322 ------------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ------------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 222334455678888889999876778899999999888887743321111111
Q ss_pred ----------CCCCCC-----------------------Cccccc------cccccCC---CCcccceeEEEEcCCCCEE
Q 004679 257 ----------RMSPPP-----------------------CVNYFC------PMHLSEH---GRSSLHLTHVTFSPNGEEV 294 (737)
Q Consensus 257 ----------~~~~~~-----------------------~~~~~~------~~~~~~~---~~~~~~i~~v~~sp~g~~l 294 (737)
..++.. ...++. ..+.... ......+++++.+++|++.
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~ 463 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV 463 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence 000000 000000 0000000 0122358999999999999
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 004679 295 LLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 295 ~~g~~dg~v~iwd~~~~~ 312 (737)
+.|...|.|.+||++++-
T Consensus 464 ~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred EEeccCCeEEEEEcccCe
Confidence 999999999999999964
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=221.96 Aligned_cols=265 Identities=16% Similarity=0.227 Sum_probs=215.9
Q ss_pred hhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc
Q 004679 14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS 93 (737)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~ 93 (737)
+...-++..+.+.+++|++|+.+. ..+++++|.||..+|.+++|+.+|..+.|++.|+.|++||+++|+++..|. -.
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~ 299 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LD 299 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cC
Confidence 334667788899999999999665 678999999999999999999999999999999999999999999999883 45
Q ss_pred cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004679 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
..++|+.|+|+. .+.|++|+.|+.|+.||++.+. .++.+..|-+.|..+.|-+ ++..+++.+.|++++
T Consensus 300 ~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~r 367 (503)
T KOG0282|consen 300 KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVR 367 (503)
T ss_pred CCceeeecCCCC-CcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEE
Confidence 678999999995 6899999999999999999743 3778888999999999999 668888999999999
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
+|+.+..-.+.. +.... .....++..+|. +.++++-+.|+.|.+|.+...-....
T Consensus 368 iWe~~~~v~ik~----------------------i~~~~--~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 368 IWENRIPVPIKN----------------------IADPE--MHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred EEEcCCCccchh----------------------hcchh--hccCcceecCCC-CCeehhhccCceEEEEecccccccCH
Confidence 999988764311 11111 234567888997 57999999999999998754321111
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004679 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
.+. ..++...+ --..|.|||||++|++|..||.+.+||.++-+.......+..++..+.|+|..
T Consensus 423 ----------kK~-----feGh~vaG-ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 423 ----------KKR-----FEGHSVAG-YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred ----------hhh-----hcceeccC-ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 011 11122223 24578999999999999999999999999988888888888999999999975
Q ss_pred C
Q 004679 334 N 334 (737)
Q Consensus 334 ~ 334 (737)
.
T Consensus 487 ~ 487 (503)
T KOG0282|consen 487 P 487 (503)
T ss_pred c
Confidence 4
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=5.4e-26 Score=207.38 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=192.5
Q ss_pred CCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004679 4 FPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK 83 (737)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~ 83 (737)
+|+-+-.++++.-.-+...+..-++.-.+.. -.+..=+.+|.||+++|+....+.+..+.|+++.|-+-+|||.-+|.
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~--g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd 92 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRN--GDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD 92 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhcc--CCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh
Confidence 3444555555544444444444454444433 44556678999999999999999998999999999999999999999
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004679 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
.++.| .|+.-|..++|+.+ .++|++|+.+..++|||++..+. +...+.+|++.|..+.|...+ +.|
T Consensus 93 elhsf--~hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~eD-~~i 158 (334)
T KOG0278|consen 93 ELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCHED-KCI 158 (334)
T ss_pred hhhhh--hhhheeeeEEeccc--chhhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEeccC-ceE
Confidence 99998 48899999999999 58999999999999999997653 356788999999999999844 677
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
+++..|++|++||.+++..+. .+ .....|+++.++++ + .+++-...+.|++|
T Consensus 159 LSSadd~tVRLWD~rTgt~v~----------------------sL----~~~s~VtSlEvs~d-G-~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQ----------------------SL----EFNSPVTSLEVSQD-G-RILTIAYGSSVKFW 210 (334)
T ss_pred EeeccCCceEEEEeccCcEEE----------------------EE----ecCCCCcceeeccC-C-CEEEEecCceeEEe
Confidence 788999999999999987431 11 11356889999997 3 55666677899999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|..+..+++.+.. ...|.+...+|+...+++|+.|..++.||..++.
T Consensus 211 daksf~~lKs~k~----------------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 211 DAKSFGLLKSYKM----------------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ccccccceeeccC----------------------ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 9998877665421 1248899999999999999999999999999864
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=231.00 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=138.7
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC----------------------------CCC-C---CC-
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----------------------------FSG-R---GL- 132 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~----------------------------~~~-~---~~- 132 (737)
+.+...|.+.|+++.|+++ |.+||+|+.|+.|+||.+.. ... . ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eccccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 3442389999999999999 89999999999999999875 000 0 00
Q ss_pred -----------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 133 -----------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 133 -----------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
-....+|+..+.+|.+.|.++.|+. + ++|++++.|++|++|++....+ ..
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~C-----------L~ 404 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKEC-----------LK 404 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcce-----------ee
Confidence 0011356778899999999999997 4 6888999999999999987653 33
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.+ .|...|+|++|+|.+.++|++|+-|+.||||++...+.+.-.
T Consensus 405 ~F---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~--------------------- 448 (712)
T KOG0283|consen 405 VF---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN--------------------- 448 (712)
T ss_pred EE---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---------------------
Confidence 33 377899999999999999999999999999999865432111
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.-. .-|++++|.|||++.++|+.+|.+++|+....
T Consensus 449 Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 449 DLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred hhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 111 14999999999999999999999999998874
No 83
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.9e-24 Score=229.45 Aligned_cols=250 Identities=14% Similarity=0.184 Sum_probs=179.8
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEEcccCc
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHS 93 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~--------~~~~~~~~h~ 93 (737)
.++..+.+++|+. .+..++..+.+|.++|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+ .+|.
T Consensus 49 gGG~~gvI~L~~~--~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQ--MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHK 125 (568)
T ss_pred CCCceeEEEeeec--CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCC
Confidence 3567788889883 344678899999999999999996 7899999999999999997642 23345 6899
Q ss_pred cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004679 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
..|.+++|+|+. ..+|++++.|++|+|||++.... ...+. |...|.+++|+| ++.+|++++.|+.|+
T Consensus 126 ~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~Ir 192 (568)
T PTZ00420 126 KKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMH 192 (568)
T ss_pred CcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEE
Confidence 999999999984 34568999999999999986431 33343 567899999999 668999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc-----eEEEEEecCCCcEEEEEeCCC----cEEEEE
Q 004679 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS-----LKSCDISSTRPHLLLVGGSDA----FARLYD 244 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~i~~sp~~~~~l~t~s~Dg----~i~iwd 244 (737)
+||++++..+ .....|... +....|+++ +.+|++++.|+ .|+|||
T Consensus 193 IwD~Rsg~~i-------------------------~tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 193 IIDPRKQEIA-------------------------SSFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred EEECCCCcEE-------------------------EEEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEE
Confidence 9999987632 111223332 233345576 46888877664 799999
Q ss_pred CCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce-eeeecCC
Q 004679 245 RRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGD 322 (737)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~-~~~~~~~ 322 (737)
++. .+++..+.. . .....+......++|.++++|..|+.|++|++..+.... ..+....
T Consensus 247 lr~~~~pl~~~~l------------------d-~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~ 307 (568)
T PTZ00420 247 LKNTTSALVTMSI------------------D-NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCS 307 (568)
T ss_pred CCCCCCceEEEEe------------------c-CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCC
Confidence 995 333322211 0 111123333345568999999999999999998754222 2233467
Q ss_pred CCeeeeeccCC
Q 004679 323 ASKIMSFTPTL 333 (737)
Q Consensus 323 ~~~~~~~~p~~ 333 (737)
+...++|.|..
T Consensus 308 p~~g~~f~Pkr 318 (568)
T PTZ00420 308 PFRSFGFLPKQ 318 (568)
T ss_pred CccceEEcccc
Confidence 77888888853
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.5e-24 Score=198.11 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=129.8
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
++|...|.+|+|+-+ |..|++|+.|+++.+|++..... ..-....+|.+.|-.++|+|.++.+|++++.|
T Consensus 17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 678899999999999 79999999999999999986421 12345678999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
++|++||++.+++...+ . ....-.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus 87 k~ir~wd~r~~k~~~~i----------------------~----~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARI----------------------E----TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK 139 (313)
T ss_pred ceEEEEEeccCcEEEEe----------------------e----ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence 99999999998854111 0 1123345789997 5899999999999999999887
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.....+. ...+..++|+-++.+++...+.|+|.|.....
T Consensus 140 ~~~~~~~----------------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 140 IVNEEQF----------------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred eeehhcc----------------------cceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 6544321 11377899998889888888888988876543
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1e-23 Score=206.82 Aligned_cols=202 Identities=19% Similarity=0.312 Sum_probs=172.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
..|+++...|....++||+.|..+.++|....+.+..+ .+|...|+.+.|+|+ ...+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeeccccccC-
Confidence 56889999888789999999999999999999999988 899999999999999 58899999999999999876332
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
......|..+|+.+..+| .+.||++++.|++..+.|++++... . +..
T Consensus 296 ---------~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t------------~vs 342 (506)
T KOG0289|consen 296 ---------PTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------T------------VVS 342 (506)
T ss_pred ---------ccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------E------------EEe
Confidence 455678999999999999 6789999999999999999998743 1 111
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004679 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
.......+++.+|+|+ +.+|.+|..|+.++|||+.+...+..|+ +|.+ +|..++|+.+
T Consensus 343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~Fp--------------------ght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKFP--------------------GHTG-PVKAISFSEN 400 (506)
T ss_pred eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccCC--------------------CCCC-ceeEEEeccC
Confidence 1122356899999998 6899999999999999999877655552 3444 6999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 004679 291 GEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 291 g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|.||++++.|+.|++||++..
T Consensus 401 GY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceEEEEEecCCeEEEEEehhh
Confidence 999999999999999999984
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.8e-23 Score=216.47 Aligned_cols=203 Identities=20% Similarity=0.301 Sum_probs=163.1
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccceEE-EEEeeCCCCCEEEEEEC
Q 004679 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFC-TKFVPETSDELVVSGAG 115 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~V~~-v~~sp~~~~~~l~sgs~ 115 (737)
..+..+.+.||...|..+++.+ +..+++++.||++++|+-..++.+. .+ .+|.+.|.+ +++.+. ++-.+++|+.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~-~~~~g~i~~~i~y~e~-~~~~l~~g~~ 79 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAF-EGPKGFIANSICYAES-DKGRLVVGGM 79 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceec-ccCcceeeccceeccc-cCcceEeecc
Confidence 3567789999999999988765 4579999999999999987666544 34 567788877 888873 2567999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|++|.+|.... ..|+..+++|...|++++... .+. +++||.|.++++|-.....
T Consensus 80 D~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~-------------- 133 (745)
T KOG0301|consen 80 DTTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV-------------- 133 (745)
T ss_pred cceEEEEecCC----------CCchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh--------------
Confidence 99999999886 356899999999999999766 333 7899999999999765432
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
....+|+..|+++++-|. +.++||+.|.+|++|.-.+ ++++| .
T Consensus 134 -------------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~ 176 (745)
T KOG0301|consen 134 -------------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------S 176 (745)
T ss_pred -------------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------c
Confidence 224578999999999996 4999999999999997632 23333 4
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+|.. -|+.+++-|++. +++++.||.|+.|++.
T Consensus 177 gHtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 177 GHTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLD 208 (745)
T ss_pred cchh-heeeeEEecCCC-eEeecCCceEEEEecc
Confidence 4555 499999998865 8899999999999984
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-24 Score=222.68 Aligned_cols=219 Identities=16% Similarity=0.238 Sum_probs=180.5
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CccceEEEEEeeCCC
Q 004679 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETS 106 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-h~~~V~~v~~sp~~~ 106 (737)
..+-+|+........+..+ +.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+ .+ |...|-+++|+.
T Consensus 197 ~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-~~~h~~rvg~laW~~--- 270 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-RGSHASRVGSLAWNS--- 270 (484)
T ss_pred ceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-cCCcCceeEEEeccC---
Confidence 4677777555554444444 3889999999999999999999999999999999989888 55 999999999994
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004679 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
..+.+|+.|+.|..+|++..... ...+.+|...|+.+.|++ ++.++++|+.|+.+.|||.....+
T Consensus 271 -~~lssGsr~~~I~~~dvR~~~~~---------~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p---- 335 (484)
T KOG0305|consen 271 -SVLSSGSRDGKILNHDVRISQHV---------VSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEP---- 335 (484)
T ss_pred -ceEEEecCCCcEEEEEEecchhh---------hhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccc----
Confidence 58999999999999999975432 235889999999999999 669999999999999999955442
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004679 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (737)
......|...|.+++|+|-...+||+|+ .|++|++||..++..+..+
T Consensus 336 ---------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v---------- 384 (484)
T KOG0305|consen 336 ---------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV---------- 384 (484)
T ss_pred ---------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------
Confidence 2334468899999999999888999975 6999999999988766554
Q ss_pred cccccccccCCCCcccceeEEEEcCCCCEEEEEeC--CCeEEEEEcCC
Q 004679 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH 310 (737)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~--dg~v~iwd~~~ 310 (737)
..+..|.++.|++..+.|+++.. ++.|.||+..+
T Consensus 385 ------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 385 ------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 22335999999999877777755 67899998776
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=210.90 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=135.0
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
..|+..|..+.|+++ |.+||+++.|.+..+|.+..... ++...++.+|..+|..+.|+|+ .++|++|+.|
T Consensus 221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~ 290 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFD 290 (519)
T ss_pred hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECCC-CCeEEecCch
Confidence 789999999999999 89999999999999999875322 3457888999999999999995 4788899999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
..+.+||+.++.... ....++...+.+++|.|+ +..+++|+.|+.|..||+....
T Consensus 291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcch
Confidence 999999999987431 111124578899999998 6899999999999999997432
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+... .+.....|.+++.++||+++++.+.|..+++++..+
T Consensus 346 -~~~W--------------------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 346 -LGNW--------------------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -hhcc--------------------cccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 2111 222233599999999999999999999999998776
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4e-23 Score=195.03 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=157.3
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
....|..|.|+|.+..|+.++.||++++||+........+ .|..++++++|.++ ..+++|+.||.|+.+|+....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc
Confidence 3678999999998888888999999999999988666666 58999999999997 689999999999999999744
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
...+..|...|.||...+ ....+++|+.|++|++||.+.....
T Consensus 87 -----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~------------------------- 129 (323)
T KOG1036|consen 87 -----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVV------------------------- 129 (323)
T ss_pred -----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccc-------------------------
Confidence 455678999999999998 5577889999999999999963321
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
........|.++... ++.|++|+.|..+.+||+|+........ ...-.+.+.++++-
T Consensus 130 -~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------------eS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 130 -GTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------------ESSLKYQTRCVALV 186 (323)
T ss_pred -cccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------------cccceeEEEEEEEe
Confidence 001123477888776 4689999999999999999876322110 11223369999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC
Q 004679 289 PNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|++.-.++++-||.|.+=.+..
T Consensus 187 pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred cCCCceEEEeecceEEEEccCC
Confidence 9999999999999988755554
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6e-24 Score=200.10 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=182.3
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
-.+.+.+.|.||++.|+.++.......+.+++.|.+.+||.++++.++.++ .+|.+.|++++|++. +.++++++.|+
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~ 212 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE 212 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence 456778889999999999998877789999999999999999999999999 899999999999998 79999999999
Q ss_pred cEEEEecC------CCCCCC----------C-------C------C-CCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004679 118 EVRLFNLS------RFSGRG----------L-------D------D-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 118 ~I~iwd~~------~~~~~~----------~-------~------~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
+..||... .+.... . + . .--.|+..+.+|...|.+..|-. +++.+++++
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence 99999832 100000 0 0 0 00135677889999999999988 778899999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.|++..+||+++++. +....+|...++.++-+|. .+++++++.|.+.++||++.
T Consensus 292 WDRTAnlwDVEtge~-------------------------v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 292 WDRTANLWDVETGEV-------------------------VNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred ccccceeeeeccCce-------------------------eccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence 999999999999874 3344567788899999997 58999999999999999983
Q ss_pred CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.- ..+..| .||.. .|+++.|.-+.+ +++|+.|.+|++||+++..
T Consensus 346 aI------------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 346 AI------------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred hc------------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 21 112222 45555 699999997765 8999999999999999854
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=226.50 Aligned_cols=221 Identities=26% Similarity=0.355 Sum_probs=180.8
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
....+.+|.+|+ ..........+.||.+.|.+++|...+.+|++|+.|.+++|||+.+|++.+.+ .+|...|.++...
T Consensus 223 ~~s~~~tl~~~~-~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 223 SGSDDSTLHLWD-LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID 300 (537)
T ss_pred ecCCCceeEEee-cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc
Confidence 355667777888 33333444449999999999999887899999999999999999999999999 7999999999887
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
+. ++++|+.|.+|++|++.++. .+..+.+|..+|+++..+ ..++++|+.|++|++||+.+++.
T Consensus 301 ~~----~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 301 PF----LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred Cc----eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee
Confidence 64 78999999999999999632 367777899999999995 57999999999999999997763
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP 261 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~ 261 (737)
+....+|...|.++.+.+. ..+++|+.|+.|++||+++. +.+..+
T Consensus 364 -------------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl------- 409 (537)
T KOG0274|consen 364 -------------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL------- 409 (537)
T ss_pred -------------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh-------
Confidence 4455678999999988763 69999999999999999987 544433
Q ss_pred CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+|.. -+..+ ...+++|++++.|++|++||..+++
T Consensus 410 -------------~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 410 -------------QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred -------------cCCcc-ccccc--ccccceeEeccccccEEEeecccCc
Confidence 22332 24333 3477899999999999999988854
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-23 Score=207.70 Aligned_cols=184 Identities=16% Similarity=0.192 Sum_probs=142.3
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
..|.+.|+.+.+.|.. ..++++.+..+.|.|||...............|-..+.+|...-.+++|++.....|++++.|
T Consensus 121 i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3589999999999986 788899999999999999865444332224456678899999889999999887899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
++|.+||+....... ........+.+|...|..++|++...++|++++.|+.+.|||+|+..
T Consensus 200 ~~i~lwdi~~~~~~~------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKED------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred CcEEEEeccccccCC------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 999999998765310 00122334557889999999999988999999999999999999631
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
... .....+|.. .|+|++|+| ++..|++|+.|++|.+||+++.
T Consensus 262 ~~~------------------~~~~~ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 262 SKP------------------SHSVKAHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred CCC------------------cccccccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 100 001123444 699999999 5566778888999999999984
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2e-24 Score=203.84 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=211.6
Q ss_pred CCCCCccccccccccccccccccee------ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004679 21 DTRPDVNHSLQMHSSLVRRLSQERE------LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~------l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~ 94 (737)
..+.+.++-+.+|+....+.+.-.. |.-|..+|.||+|+.|.++||+|+.||.|+||.+.+|.++..|..+|+.
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk 307 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK 307 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc
Confidence 3456778888999855544432222 2336789999999999999999999999999999999999999889999
Q ss_pred ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004679 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (737)
Q Consensus 95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v 174 (737)
.|+|+.|+.+ +..+++++.|.+++|.-+..+ +.+..+.+|++.|+...|.+ +++.+++++.||+|++
T Consensus 308 Gvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 308 GVTCLSFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKV 374 (508)
T ss_pred CeeEEEEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEE
Confidence 9999999999 689999999999999999864 33788999999999999999 6688889999999999
Q ss_pred EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004679 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
|+..+.++... ....+....|+.+..-|.++..+++|...+++.|.++. ++.+..+
T Consensus 375 W~~KtteC~~T-----------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 375 WHGKTTECLST-----------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred ecCcchhhhhh-----------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence 99998774411 11123456788888889888999999999999999986 3333333
Q ss_pred cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004679 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (737)
.. ....++...+++.||.|.++++.+.|+.+++|.+.+++....+.-+...+-.++.+|..+
T Consensus 431 sS------------------GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 431 SS------------------GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cc------------------CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 21 112233577788999999999999999999999999998888777777777788888654
Q ss_pred Ccc
Q 004679 335 GLE 337 (737)
Q Consensus 335 ~~~ 337 (737)
-++
T Consensus 493 llA 495 (508)
T KOG0275|consen 493 LLA 495 (508)
T ss_pred hhh
Confidence 433
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.8e-24 Score=198.16 Aligned_cols=269 Identities=14% Similarity=0.132 Sum_probs=202.6
Q ss_pred ccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 48 ~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
...+.|.+|+||| ...+++.|+.|++||+|+++. +..+.+-...|.++|.+++|+.+ |..+++|+-|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence 3568899999999 556777999999999999986 45554444789999999999999 7999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCC----------------
Q 004679 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAG---------------- 187 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s~Dg~I~vwdl~~~~~~~~~~---------------- 187 (737)
+++ +..+..|..+|..+.|-+ +.. .|+|||.|++|++||.+...++..+.
T Consensus 103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 753 566788999999999987 434 89999999999999999877652111
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004679 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
....+....++.+.++....-.........+.|++...+. +..+.|+-+|++-|..+....+...+.. +|.+..
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtF-----kCHR~~ 244 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTF-----KCHRST 244 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeE-----EEeccC
Confidence 1113334445555544432222222244578899999874 6779999999999999987644333221 121110
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCC
Q 004679 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 341 (737)
.. ....-+.|++|+|+|.-..|++++.||++.+||-....++.....+..++.+.+|+.++...++...
T Consensus 245 ~~-----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 245 NS-----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CC-----CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 00 0012457999999999999999999999999999887777777888999999999998877766553
No 95
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.4e-22 Score=219.78 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=147.8
Q ss_pred EeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004679 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (737)
Q Consensus 68 gs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (737)
|+.++.|++|+......+..+ .+|...|.+++|+|+. +.+|++|+.|++|+|||+........ ....++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence 667889999999887778888 7999999999999974 68999999999999999975321100 0012355678899
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004679 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
..|.+++|+|.+..+|++++.|++|++||+++++.. . .+ .+...|.+++|+|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~--------~i----~~~~~V~Slswspd- 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------F--------QI----NMPKKLSSLKWNIK- 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------E--------EE----ecCCcEEEEEECCC-
Confidence 999999999966567789999999999999987522 0 01 12346899999997
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc----ceeEEEEcCCCCEEEEEeCCC--
Q 004679 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE-- 301 (737)
Q Consensus 228 ~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~v~~sp~g~~l~~g~~dg-- 301 (737)
+.+|++++.|+.|+|||+++++.+..+. +|.+. .+....|++++.+|++++.|+
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~--------------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFH--------------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEe--------------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 6899999999999999999887554432 22221 123345679999999988774
Q ss_pred --eEEEEEcCC
Q 004679 302 --HVYLMDVNH 310 (737)
Q Consensus 302 --~v~iwd~~~ 310 (737)
.|++||++.
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999886
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=211.34 Aligned_cols=271 Identities=21% Similarity=0.279 Sum_probs=218.4
Q ss_pred hhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004679 10 SIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE 89 (737)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~ 89 (737)
.....+..+.+..+++.+..|++|+....+...+.+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL- 257 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL- 257 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-
Confidence 3344677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|++.|+++.|.-. ...+++|+.|.+|++||+.... | ..+.. ..+.+..|... ...+++|-.|
T Consensus 258 sGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k~~--C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~D 321 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLS--HSRVVSGSADRTIKLWDLQKAY--C--------SKTVL-PGSQCNDIVCS---ISDVISGHFD 321 (459)
T ss_pred cccccceeeehhhcc--ccceeeccccchhhhhhhhhhh--e--------ecccc-ccccccceEec---ceeeeecccc
Confidence 899999999999987 3559999999999999998622 2 22222 23445666664 3678899999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
++|++||.+..... ...+. .+.|+++..+++ +..+++++.|.++.+.|+++..
T Consensus 322 kkvRfwD~Rs~~~~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 322 KKVRFWDIRSADKT-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred cceEEEeccCCcee-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeeccccc
Confidence 99999999987633 11112 247899999997 5788888999999999999876
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC--Ceee
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIM 327 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~ 327 (737)
....+... .+ .....++.+.|||++.|+++|+.||.|+||++.+++........+.. +..+
T Consensus 375 I~~~~sA~-------------g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 375 IRQTFSAE-------------GF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred EEEEeecc-------------cc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 54443211 00 11123889999999999999999999999999999877776665554 8889
Q ss_pred eeccCCCCccCCCC
Q 004679 328 SFTPTLNGLELQPP 341 (737)
Q Consensus 328 ~~~p~~~~~~~~~~ 341 (737)
+|+|.+.++.....
T Consensus 438 ~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 438 SWNPSGSGLLSADK 451 (459)
T ss_pred EEcCCCchhhcccC
Confidence 99998877665443
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=208.83 Aligned_cols=250 Identities=18% Similarity=0.221 Sum_probs=193.2
Q ss_pred cCCCCCccccccccccccccc--------ccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE------
Q 004679 20 TDTRPDVNHSLQMHSSLVRRL--------SQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL------ 84 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~------ 84 (737)
+-+.......+.+|+..-... .+-.+|.||++.=.+|+|++.. -.|++|+.|++|.+||+.....
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcccc
Confidence 333445556677777433322 3344899999978899999954 5899999999999999975322
Q ss_pred -EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004679 85 -LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 85 -~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
...+ .+|+..|..++|++.. .++|++++.|+.+.|||++... .++.....+|+..|.|++|+|-+..+|
T Consensus 219 p~~~~-~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 219 PKTIF-SGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred ceEEe-ecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceE
Confidence 2334 7999999999999986 7899999999999999999631 245678889999999999999998999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
||||.|++|.+||+|+... .+..+.+|...|..+.|+|.....||+++.|+++.+|
T Consensus 289 AT~S~D~tV~LwDlRnL~~------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNK------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred EeccCCCcEEEeechhccc------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 9999999999999998763 2566678999999999999998999999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNH 310 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~dg~v~iwd~~~ 310 (737)
|+..-.....-.. ...-.+.-+..|+.+...|..+.|+|+..++ ++.+.|+.+.||.+..
T Consensus 345 Dls~ig~eq~~ed-------a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 345 DLSRIGEEQSPED-------AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eccccccccChhh-------hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9975432222111 1111122233355555579999999988764 5556699999999875
No 98
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.6e-23 Score=202.50 Aligned_cols=258 Identities=18% Similarity=0.260 Sum_probs=203.9
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeEE----EEEcccCccc
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLL----HSIETGHSAN 95 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~ 95 (737)
++.+++.+++|+ .+++..+++.||.++|.+++|.-. ...+++++.|.++++|-++.+... +.. .+|...
T Consensus 120 tgsYDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRS 195 (423)
T ss_pred EeecCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccc
Confidence 467899999999 568889999999999998888643 246999999999999999876532 222 599999
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC---------------CCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004679 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR---------------GLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 160 (737)
|-+++..++ +..+++|+.|..|+||+....... ......-.|+..+.+|..+|.++.|++ .
T Consensus 196 V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~ 271 (423)
T KOG0313|consen 196 VDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--A 271 (423)
T ss_pred eeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--C
Confidence 999999999 799999999999999993321110 011122356788999999999999987 4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCC------------------CCCCCCCccceEEEeccCCcee-eccCCCCCccceEEE
Q 004679 161 HVVWSASEDGTLRQHDFRQGSSCP------------------PAGSSHQECRNILLDLRCGAKR-SLADPPKQTLSLKSC 221 (737)
Q Consensus 161 ~~l~s~s~Dg~I~vwdl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i 221 (737)
..+++++.|.+|+.||+.++.... .+..+..+....+||.+.+... ....+.+|...|.++
T Consensus 272 ~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence 678899999999999999887552 2334445666778888776543 334677899999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004679 222 DISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d 300 (737)
.|+|.+...|++++.|+++++||+|+.+ ++..+ .+|.. .|.++.|. ++.+|++|+.|
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------------~~h~D-Kvl~vdW~-~~~~IvSGGaD 409 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------------AGHND-KVLSVDWN-EGGLIVSGGAD 409 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCCcceee--------------------ccCCc-eEEEEecc-CCceEEeccCc
Confidence 9999999999999999999999999866 44443 33433 69999997 55679999999
Q ss_pred CeEEEEEcCC
Q 004679 301 EHVYLMDVNH 310 (737)
Q Consensus 301 g~v~iwd~~~ 310 (737)
++|+|+....
T Consensus 410 ~~l~i~~~~~ 419 (423)
T KOG0313|consen 410 NKLRIFKGSP 419 (423)
T ss_pred ceEEEecccc
Confidence 9999996543
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.9e-23 Score=192.14 Aligned_cols=193 Identities=14% Similarity=0.158 Sum_probs=129.2
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe-cCCCcEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW 164 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~ 164 (737)
..|..+|.+-|+|+.|.+. |..+++|+.|++|+|||.+..++. +.+....+.|.+.|..+.|. |.-++.++
T Consensus 6 ~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEE
Confidence 3455789999999999999 899999999999999998654432 45567889999999999995 56678999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEE
Q 004679 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY 243 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iw 243 (737)
+|+.|+++.+|.-...... .+... | ............|+.++|.|.. +-.||+++.||.+|||
T Consensus 78 ~cS~Drtv~iWEE~~~~~~-----~~~~~----W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEE-----AHGRR----W-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEecCCceeeeeecccccc-----cccce----e-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 9999999999986422210 00000 0 1222333456789999999964 5579999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC---CCEEEEEeCC-----CeEEEEEcCC
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH 310 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---g~~l~~g~~d-----g~v~iwd~~~ 310 (737)
+.-.--.+.......+ +..... ..+....+..|+.|+|. ..+|++|+.+ +.++||....
T Consensus 142 EA~dp~nLs~W~Lq~E-------i~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHE-------IQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred ecCCccccccchhhhh-------hhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 8754332222211000 000000 01112225788999873 4567777665 3666665544
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.7e-23 Score=201.68 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=187.5
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
++.++.+.+++ ....+.+.+|+||+..|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|
T Consensus 237 GG~d~~av~~d--~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 237 GGEDKTAVLFD--KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHP 313 (506)
T ss_pred cCCCCceEEEe--cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeecc
Confidence 55666777777 5666788999999999999999999999999999999999999877766666 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
. |.+|++++.|++..+.|++.+.... ...-....-.+++.+|+| ++.+|.+|..|+.|++||+....
T Consensus 314 t--geYllsAs~d~~w~Fsd~~~g~~lt--------~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-- 380 (506)
T KOG0289|consen 314 T--GEYLLSASNDGTWAFSDISSGSQLT--------VVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-- 380 (506)
T ss_pred C--CcEEEEecCCceEEEEEccCCcEEE--------EEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--
Confidence 9 7999999999999999999743211 111111223589999999 67999999999999999999875
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
.+..+++|..+|..++|+.+ |.+|++++.|+.|++||+|..+.+.++...
T Consensus 381 -----------------------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------ 430 (506)
T KOG0289|consen 381 -----------------------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------ 430 (506)
T ss_pred -----------------------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------
Confidence 35667789999999999986 799999999999999999988766665321
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
....+.++.|.+.|.+|++++.|=.|++++-.+
T Consensus 431 --------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 431 --------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred --------------ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 112499999999999999998777777776444
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.8e-23 Score=189.38 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=135.2
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe-cCCCcEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW 164 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~ 164 (737)
.++...|.+.|.++...-. |.+|++|+.|++|+|+.++...+. ..+..+.+|.++|..++|. |.-+.+|+
T Consensus 4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~s-------~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQS-------KLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCCc-------eeeeEecCCCCCeeEEeecccccCcEee
Confidence 3444678899998887776 799999999999999999975442 3478999999999999994 56678999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEE
Q 004679 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY 243 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iw 243 (737)
++++||.|.+|.-.+++- ........|...|++++|.|.+ +-+|++++.||.|.|.
T Consensus 75 ScsYDgkVIiWke~~g~w-----------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRW-----------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred EeecCceEEEEecCCCch-----------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 999999999999777641 1234455688899999999975 4578999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC---C-----------CEEEEEeCCCeEEEEEcC
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---g-----------~~l~~g~~dg~v~iwd~~ 309 (737)
+.+....-. ... ....|.. .|++++|.|- | +.|++|+.|+.|+||+..
T Consensus 132 ~~~~~g~w~-----------t~k------i~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 132 TYDSSGGWT-----------TSK------IVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred EEcCCCCcc-----------chh------hhhcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 998641100 000 0022333 4999999996 5 569999999999999877
Q ss_pred C
Q 004679 310 H 310 (737)
Q Consensus 310 ~ 310 (737)
+
T Consensus 194 ~ 194 (299)
T KOG1332|consen 194 S 194 (299)
T ss_pred C
Confidence 6
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=6e-23 Score=189.55 Aligned_cols=249 Identities=17% Similarity=0.221 Sum_probs=196.4
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
-+.+..+|. .-.++.+.++.||+++|+|+..+.+.++|+||+.|.++++||+++|+++..+. -..+|..+.|++.
T Consensus 30 KD~~~~vw~--s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~- 104 (327)
T KOG0643|consen 30 KDSTPTVWY--SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG- 104 (327)
T ss_pred CCCCceEEE--ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC-
Confidence 356777887 45678899999999999999999999999999999999999999999999883 5789999999999
Q ss_pred CCCEEEEEEC-----CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 106 SDELVVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 106 ~~~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
|++++.+.. .+.|.++|++...... ...+|...+..+.+.++.+.|.| -+.+|++|..||.|..||++++
T Consensus 105 -gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 105 -GNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred -CcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccC
Confidence 677777654 4779999998543211 11345677777889999999999 5689999999999999999998
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
... +.....|...|+.++++|+ ..++++++.|.+-++||.++...++++....+.
T Consensus 180 ~~~------------------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 180 KEL------------------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred cee------------------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeecccc
Confidence 632 3333456779999999998 589999999999999999998877766543321
Q ss_pred CCC------------------------------cccccccc-----ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004679 261 PPC------------------------------VNYFCPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (737)
Q Consensus 261 ~~~------------------------------~~~~~~~~-----~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i 305 (737)
... ...|.-.. -.-.+|.+ +|++++|||+|+-.++|+.||.|++
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEE
Confidence 100 00000000 01146666 8999999999999999999999999
Q ss_pred EEcCC
Q 004679 306 MDVNH 310 (737)
Q Consensus 306 wd~~~ 310 (737)
.-...
T Consensus 314 h~Fd~ 318 (327)
T KOG0643|consen 314 HHFDS 318 (327)
T ss_pred EEecc
Confidence 87665
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.5e-22 Score=189.12 Aligned_cols=224 Identities=15% Similarity=0.207 Sum_probs=169.1
Q ss_pred eecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe----------EEE----EEcccCccceEEEEEeeCCCCCE
Q 004679 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK----------LLH----SIETGHSANVFCTKFVPETSDEL 109 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~----------~~~----~~~~~h~~~V~~v~~sp~~~~~~ 109 (737)
..+.|.+.|+++.+.+ .|+++++|+.||.|.|||++.-. .++ ....+|...|.++.|-|.. ..+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGm 116 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGM 116 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Cce
Confidence 3456899999999998 78999999999999999997532 111 1124788999999999975 568
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004679 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAG 187 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~ 187 (737)
|.+++.|.++++||.++.+. ...+ ...+.|.+-+++|-.. .++++|..|-.|++.|+..+...
T Consensus 117 FtssSFDhtlKVWDtnTlQ~----------a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s---- 181 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQE----------AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS---- 181 (397)
T ss_pred eecccccceEEEeeccccee----------eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----
Confidence 99999999999999997432 2233 3567788888888432 47888888999999999998632
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccc
Q 004679 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 266 (737)
....+|...|.++.|+|...-.|++|+.||.|++||+|.. ..+..+.....
T Consensus 182 ---------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~------- 233 (397)
T KOG4283|consen 182 ---------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT------- 233 (397)
T ss_pred ---------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-------
Confidence 2334788899999999998888999999999999999864 22222211110
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
..+..+..+..+.+.+..++|+.+|.++++.+.|..+++|+..++.
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 0011111122233369999999999999999999999999999865
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2.5e-22 Score=200.50 Aligned_cols=209 Identities=12% Similarity=0.210 Sum_probs=160.6
Q ss_pred cceeecccCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004679 42 QERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg--------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
..+.+.||+..|.||+.+|+..++++|-.-| .|+|||..+...+..+ ......|+|++|++...|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence 3455679999999999999999999876555 4999999888888888 567789999999997767777665
Q ss_pred --ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004679 114 --AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 114 --s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~ 191 (737)
+.+..+.+||...... ....+.....|....|+|.+++++++++. +.+.+|+++.+....
T Consensus 175 D~s~~h~lSVWdWqk~~~----------~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k------- 236 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAK----------LGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVK------- 236 (626)
T ss_pred cCCCccccchhhchhhhc----------cCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEE-------
Confidence 3467789999986432 34445566778899999999999988886 799999998876331
Q ss_pred ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004679 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
...+...+.. ..|.|++|.+++ -++||.++|.|.||+.+..+..+..
T Consensus 237 -------------~~~~fek~ek-k~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~----------------- 283 (626)
T KOG2106|consen 237 -------------RQGIFEKREK-KFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQV----------------- 283 (626)
T ss_pred -------------Eeeccccccc-eEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEe-----------------
Confidence 0112222222 679999999963 7899999999999999765432221
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd 307 (737)
+.|.+ .|-+++.-.+|..| +|+.|.+|..||
T Consensus 284 ---~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd 314 (626)
T KOG2106|consen 284 ---HAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWD 314 (626)
T ss_pred ---eecCC-ceEEEEEecCccEe-ecCccceEEecc
Confidence 22444 59999999999855 599999999999
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-23 Score=208.88 Aligned_cols=253 Identities=21% Similarity=0.298 Sum_probs=199.6
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCC
Q 004679 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 107 (737)
.++++|. .......+++.-.+..|.++.|..||++||+|+..|.|+|+|+.+...+..+ .+|+.+|..+.|+|.. +
T Consensus 48 ~rvqly~--~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~ 123 (487)
T KOG0310|consen 48 VRVQLYS--SVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-N 123 (487)
T ss_pred cEEEEEe--cchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-C
Confidence 4566666 4445566777777889999999999999999999999999997776667777 7999999999999986 7
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004679 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (737)
Q Consensus 108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~ 187 (737)
..|++|+.|+.+++||+.+.. ....+.+|++.|.|.+|+|.++++++|||+||.|++||.+.....
T Consensus 124 t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---- 189 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---- 189 (487)
T ss_pred eEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----
Confidence 889999999999999998632 144788999999999999999999999999999999999986411
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004679 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
+.. ..|..+|..+.+-|. +.++++++. ..+++||+-++.......
T Consensus 190 ---------v~e------------lnhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~~------------ 234 (487)
T KOG0310|consen 190 ---------VVE------------LNHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTSM------------ 234 (487)
T ss_pred ---------eEE------------ecCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhhh------------
Confidence 111 135678899999996 578888874 689999998654322110
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004679 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
..|.. .|+|+++..++..|++|+-|+.|++||+.+-+ .........++-.++.+|+...+......
T Consensus 235 -------~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 235 -------FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred -------hcccc-eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEeccc
Confidence 11333 69999999999999999999999999977643 33344456777788888876655554433
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-22 Score=204.63 Aligned_cols=216 Identities=16% Similarity=0.270 Sum_probs=157.2
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
..++||++.|.||+..|.|.+||+|+.||+|+||.+.++.++.++. ..+.|.||+|+|..+-.+|++ .....+.|-+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAv-A~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAV-AVGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEE-EecCceEEeC
Confidence 4578999999999999999999999999999999999999999984 567999999999863334444 4444466655
Q ss_pred cCCCCCCCC------------CCC------CC---------CCceeeccCCCceeEEEEecCCCcEEEEEeCC---CcEE
Q 004679 124 LSRFSGRGL------------DDN------AI---------TPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLR 173 (737)
Q Consensus 124 ~~~~~~~~~------------~~~------~~---------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~ 173 (737)
..-++.... ... .+ .-+...-.|...|..+.|+. .+.||++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence 443211000 000 00 01223445888999999998 66888887654 5788
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
|+++...... ..+....+.+.++.|+|..+ +|++++ ...|+|||+.....+..
T Consensus 550 iHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 550 IHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKK 602 (733)
T ss_pred EEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHH
Confidence 8888776522 22223456789999999864 555555 47899999987655544
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.. ...+|..++.+|.|..|+.|+.|+.+..||+.-.
T Consensus 603 L~t---------------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 603 LLT---------------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred Hhc---------------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 421 1126999999999999999999999999998863
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-21 Score=184.54 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=129.3
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004679 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
.-+.| ......|+++.|+++ |.++++++.|.+|+|||...+.. +.++..+.-.+..+.|.. ....+
T Consensus 6 ~ak~f-~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~~----------~~ti~skkyG~~~~~Fth-~~~~~ 71 (311)
T KOG1446|consen 6 PAKVF-RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGKQ----------VKTINSKKYGVDLACFTH-HSNTV 71 (311)
T ss_pred ccccc-ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCce----------eeEeecccccccEEEEec-CCceE
Confidence 33445 456789999999999 89999999999999999987433 556665666778888876 33555
Q ss_pred EEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004679 164 WSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (737)
Q Consensus 164 ~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~ 241 (737)
+.++. |.+|+..++.+.+ .+.-+++|...|++++.+|-+ ..+++++.|++||
T Consensus 72 i~sStk~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvr 125 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVR 125 (311)
T ss_pred EEccCCCCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEE
Confidence 55555 8899999998876 355677899999999999975 8999999999999
Q ss_pred EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+||+|..+....+.. . .-..++|+|+|-+++++...+.|++||+++-
T Consensus 126 LWDlR~~~cqg~l~~---------------------~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 126 LWDLRVKKCQGLLNL---------------------S--GRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred eeEecCCCCceEEec---------------------C--CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 999996543222110 0 1334899999999999999889999999984
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.4e-22 Score=197.24 Aligned_cols=208 Identities=20% Similarity=0.263 Sum_probs=169.6
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEc----------------ccCccceEEEEEeeCC
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIE----------------TGHSANVFCTKFVPET 105 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-~~~----------------~~h~~~V~~v~~sp~~ 105 (737)
+..+..|.-+|.||+++|+.++.++++.|++|.-|++.+++... .+. ..|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D- 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD- 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence 56677899999999999999999999999999999998876431 110 267888999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004679 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~ 185 (737)
+.+|++|+.|..|.||+.++. ++++.+.+|.+.|.+++|-. +.+.|++++.|++|++|++....
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s---- 277 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS---- 277 (479)
T ss_pred -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence 899999999999999999974 34778999999999999987 77888899999999999998764
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004679 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (737)
.+.++.+|...|.++..... +..+.+|+.|+++++|++.....+.-
T Consensus 278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlif------------ 323 (479)
T KOG0299|consen 278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIF------------ 323 (479)
T ss_pred ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeee------------
Confidence 34555678888888887764 56777778999999999954321110
Q ss_pred ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.++.+ .+-|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus 324 ---------rg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 324 ---------RGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred ---------eCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence 22322 4888998765 468999999999999998843
No 109
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.4e-21 Score=197.88 Aligned_cols=231 Identities=17% Similarity=0.238 Sum_probs=157.1
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEE-----EEEcccCccceE
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVF 97 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~-----~~~~~~h~~~V~ 97 (737)
++--+-+.+.. ..++-+.+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-.. .....+..-.|.
T Consensus 54 G~~lgvlPl~~-~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE 132 (1012)
T KOG1445|consen 54 GGKLGVLPLTA-KGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVE 132 (1012)
T ss_pred CceEEEEeccc-cCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEE
Confidence 33344444443 3445567778899999999999999 6779999999999999999854221 112134456789
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
|+.|+|.. ..+++++ ..|+++|||+.+. +....+.+|.+.|.++.|+. ++.+|++++.|+.|+|||-
T Consensus 133 ~l~fHpTa-Dgil~s~-a~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 133 CLRFHPTA-DGILASG-AHGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred EeecccCc-CceEEec-cCceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCC
Confidence 99999986 4455554 5799999999863 33678889999999999998 6799999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC----CcEEEEECCCCC-Ccc
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLT 252 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D----g~i~iwd~~~~~-~~~ 252 (737)
+..........+|+.. .=..+.|..+-. .|++.+.+ ..|++||.+... +++
T Consensus 200 Ra~~~piQ~te~H~~~-----------------------rdsRv~w~Gn~~-rlisTGF~~~R~reV~~~Dtr~f~~p~~ 255 (1012)
T KOG1445|consen 200 RASMEPIQTTEGHGGM-----------------------RDSRVLWAGNWE-RLISTGFTTKRIREVRAYDTRKFGAPVH 255 (1012)
T ss_pred ccCCCccccccccccc-----------------------hhheeeeccchh-hhhhcccchhhheeeeeeeccccCCcce
Confidence 9875442222222211 112234443322 34444433 568899998643 222
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~ 312 (737)
++.. .....|.---|.||.++|+.++. +.+++++.+...+
T Consensus 256 tlel--------------------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 256 TLEL--------------------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred eEEe--------------------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 2211 11112555678999887776665 8899999988743
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=200.98 Aligned_cols=233 Identities=13% Similarity=0.104 Sum_probs=171.0
Q ss_pred CCCcccccccccccccccccceeeccc-CCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGH-QGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~~s~~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~ 100 (737)
+.....++.+|+ .+++....++++- ...-.++.. -++++++++. .-..|.+|.+......... .--.++|.|++
T Consensus 13 sS~d~~~~~~~d--l~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWD--LRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEe--cCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhh-cccccceeeee
Confidence 334455677777 4555555555543 111111111 1235666664 4457899998876544422 23568899999
Q ss_pred EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
-+|. |.+|+.|+..|.|++|.+.++.. +..+.+|-..|+|+.|+- ++.+|+|||.||.|.+|.+..-
T Consensus 89 s~n~--G~~l~ag~i~g~lYlWelssG~L----------L~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 89 SSNL--GYFLLAGTISGNLYLWELSSGIL----------LNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cCCC--ceEEEeecccCcEEEEEeccccH----------HHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEee
Confidence 9999 78999888999999999997542 677789999999999998 6688999999999999998653
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (737)
-.. .+...+..+..+..|..+|+++...+.+ ...++|++.|.++++||+..+..+.++..+
T Consensus 156 v~a----------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-- 217 (476)
T KOG0646|consen 156 VSA----------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-- 217 (476)
T ss_pred ccc----------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--
Confidence 211 1112334556667899999999887642 358999999999999999998877665321
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 218 --------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 218 --------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred --------------------CcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 2599999999999999999999999998876
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=184.82 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=128.9
Q ss_pred EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC-cEE
Q 004679 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVV 163 (737)
Q Consensus 85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l 163 (737)
+..+ ..|..+|++++.+ +.++++|+.|-+|+|||++.... +..+..|.+.|+++.|.+.-. ..|
T Consensus 36 lF~~-~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~q----------lg~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 36 LFAF-SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQ----------LGILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred cccc-cccccceeEEEec----ceeEeccCCCCcEEEEeccchhh----------hcceeccccceEEEEecCCcchhhe
Confidence 3445 6899999999997 56999999999999999996432 567778999999999987332 267
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
++|+.||.|.+|+..... .+...+.|...|+.++.+|. +.+-++.+.|+.+++|
T Consensus 101 lS~sdDG~i~iw~~~~W~-------------------------~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSWE-------------------------LLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTW 154 (362)
T ss_pred eeecCCCcEEEEEcCCeE-------------------------EeeeecccccccceeEecCC-CceEEEEcCCceeeee
Confidence 799999999999988764 35556678889999999997 5888899999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|+-.++.-..+.. .+ .-+.|.|+|.|.+++.+..+ .|-+|.+.+
T Consensus 155 NLV~Gr~a~v~~L-------------------~~---~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL-------------------KN---KATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred hhhcCccceeecc-------------------CC---cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 9987763222110 01 14459999999999988877 788888776
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=194.05 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=104.4
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC---CCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS---CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (737)
..+..|.+++.+.+|+| ++.++++|+.|.+|+++|+..-.. +.....+... .....+.++..|...
T Consensus 106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~q----------a~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQ----------ARHPVIRTLYDHVDE 174 (430)
T ss_pred EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcc----------cCCceEeehhhccCc
Confidence 45667999999999999 679999999999999999873211 1111111111 112345667788999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004679 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (737)
Q Consensus 218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g 297 (737)
|+++.|+|. ...|++|+.|++|++||+........+ +.| ....+|.++.|+|.|.+|++|
T Consensus 175 vn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~----------K~~---------qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 175 VNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAF----------KVF---------QDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred ccceeecch-hheEEeccCCCeEEEEecccHHHHHHH----------HHh---------hccceeeeEeecCCCceEEEe
Confidence 999999997 589999999999999999753321111 111 112269999999999999999
Q ss_pred eCCCeEEEEEcCCC
Q 004679 298 YSGEHVYLMDVNHA 311 (737)
Q Consensus 298 ~~dg~v~iwd~~~~ 311 (737)
....++++||+.+-
T Consensus 235 TdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTY 248 (430)
T ss_pred cCCCceeEEeccce
Confidence 99999999999984
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=207.62 Aligned_cols=215 Identities=20% Similarity=0.290 Sum_probs=169.0
Q ss_pred ccCCceE---EEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 48 ~H~~~V~---~l~~s~-~g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
.|...|. ++..+. ++++|+||+.||.|++|+..... .+..+ ..|.+.|+.+....+ +..|++++.|-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence 3455555 445544 67789999999999999986532 35566 689999999999988 68999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
+|++|+...... .+..++..|.+.|.|++.-..+..++|+||.|+.|.+||+.++... .+.
T Consensus 96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~-l~~---------- 156 (735)
T KOG0308|consen 96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT-LVA---------- 156 (735)
T ss_pred eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh-hhh----------
Confidence 999999986432 2367888999999999994447789999999999999999987420 000
Q ss_pred EeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
.... ....... ++...|++++.++. +..|+.|+..+.|++||.++.+.+..+ .|
T Consensus 157 ---s~n~-~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG 211 (735)
T KOG0308|consen 157 ---SFNN-VTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG 211 (735)
T ss_pred ---hccc-cccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence 0000 1112222 67789999999997 589999999999999999998866554 34
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|.. .|..+..++||..+++++.||+|++||+..
T Consensus 212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 555 499999999999999999999999999876
No 114
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.9e-22 Score=192.19 Aligned_cols=250 Identities=19% Similarity=0.249 Sum_probs=170.1
Q ss_pred hhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEE
Q 004679 12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------RKLL 85 (737)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------~~~~ 85 (737)
..+|-++++..-...-++.+-.. ..+.-..+-+.+|.+.|++|.|+.++++||+|+.|-.++||+++. .+.+
T Consensus 20 ~~FL~QR~i~~~~~~~k~F~~~~--~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI 97 (609)
T KOG4227|consen 20 ESFLCQREIGSVKSVVKTFRPDF--QHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI 97 (609)
T ss_pred eeeeeecccCCChhhhhhhchhh--hhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc
Confidence 34556666655544433333222 224445567889999999999999999999999999999999864 2455
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
......|.+.|.|++|... ..+|++|..+++|.+.|+.+.+.. .+.......+.|+.+..+|. .+.|++
T Consensus 98 ~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~qsi--------~V~~~~~~~~~VY~m~~~P~-DN~~~~ 166 (609)
T KOG4227|consen 98 GVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETKQSI--------YVANENNNRGDVYHMDQHPT-DNTLIV 166 (609)
T ss_pred eeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccceee--------eeecccCcccceeecccCCC-CceEEE
Confidence 5554456789999999987 589999999999999999864321 12222233458999999996 589999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
.+.++.|.+||.+........ + ... ........+.|+|..+.+|++.+..+-+.+||+
T Consensus 167 ~t~~~~V~~~D~Rd~~~~~~~----------~---------~~A---N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNPISL----------V---------LPA---NSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred EecCceEEEEeccCCCCCCce----------e---------eec---CCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 999999999999987622000 0 011 112355778999999999999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+....- +..+. ..+. -........++.|+|+|..|++--....-.+||+.+
T Consensus 225 R~~~~~------------~~~~~-~~~~-L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 225 RMQARP------------VYQRS-MFKG-LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred ccccch------------HHhhh-cccc-CcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 864310 00000 0000 001111256788999998877665554445555554
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=1.5e-22 Score=202.63 Aligned_cols=275 Identities=14% Similarity=0.167 Sum_probs=199.5
Q ss_pred CCCccccccccccccc--ccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-----------
Q 004679 23 RPDVNHSLQMHSSLVR--RLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI----------- 88 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~--~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~----------- 88 (737)
+++++-+|++||..-- +++-.+.|.. ....|++++|++.|..|++.+..-+.+|+|-+..+.....
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n 263 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN 263 (641)
T ss_pred eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc
Confidence 4778899999995322 2222333332 2347999999999998888887889999997654443322
Q ss_pred cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce--eeccCCCceeEEEEecCCCcEEEEE
Q 004679 89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA--LYQCHTRRVKKLAVEVGNPHVVWSA 166 (737)
Q Consensus 89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~~l~s~ 166 (737)
.++|...++|.+|+|.. ...|++++.||+++|||+.....+. +.+. ...+..-+++.++|++ ++.+||+|
T Consensus 264 TKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~------qVik~k~~~g~Rv~~tsC~~nr-dg~~iAag 335 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQL------QVIKTKPAGGKRVPVTSCAWNR-DGKLIAAG 335 (641)
T ss_pred cCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhhe------eEEeeccCCCcccCceeeecCC-Ccchhhhc
Confidence 15899999999999997 7889999999999999998644321 1111 1123345789999999 66889999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
+.||+|.+|+.......+ ...+..-......|+|+.|+++ +++|++-+.|+.+++||++
T Consensus 336 c~DGSIQ~W~~~~~~v~p--------------------~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 336 CLDGSIQIWDKGSRTVRP--------------------VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCCceeeeecCCccccc--------------------ceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecc
Confidence 999999999985543110 0111111122348999999997 6999999999999999999
Q ss_pred CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCCCCcceeeeec
Q 004679 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTV 320 (737)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~ 320 (737)
..+. ++..+... ....+-+.++|||+.++|++|+. .|.+++||..+...+..+...
T Consensus 395 q~kk------------pL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 395 QFKK------------PLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred cccc------------chhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 7651 22221111 11224677999999999999976 468999999998888887777
Q ss_pred CCCCeeeeeccCCCCccCCCCCCC
Q 004679 321 GDASKIMSFTPTLNGLELQPPIHD 344 (737)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~ 344 (737)
+..+..+.|+|.++.+-.....+.
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CceEEEEeecchhhheeeecCCCc
Confidence 888888999999998877666543
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=4e-22 Score=206.41 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=212.6
Q ss_pred hccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe---------
Q 004679 16 DTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRK--------- 83 (737)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g---~~lasgs~dg~V~vwd~~~~~--------- 83 (737)
....+...++.+..+.++.....+++....++||.+-|.+|+|...+ -+||++++|..||||.+.-+.
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence 34556777888889999998888999999999999999999998744 389999999999999874322
Q ss_pred ---------------EEE------EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----------
Q 004679 84 ---------------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---------- 132 (737)
Q Consensus 84 ---------------~~~------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~---------- 132 (737)
.+. .+..+|++.|.++.|+|. +..|++++.|.++.+|......+.-.
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 111 122599999999999999 67899999999999998775322100
Q ss_pred --------------------------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 133 --------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 133 --------------------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
+...+.......+|.+.|.++.|+| .+.+|++.+.|.+-++|---..
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccc
Confidence 0011122344568999999999999 5689999999999999864422
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-----------
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP----------- 249 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~----------- 249 (737)
+ . .-..+..+..|...++|++|-+. ...|++|.+...+|+|+....-
T Consensus 394 q-~--------------------~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~ 451 (764)
T KOG1063|consen 394 Q-Q--------------------EWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC 451 (764)
T ss_pred c-c--------------------ceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence 1 0 12346666778889999999985 4689999999999999863210
Q ss_pred --Cc-----------------ccccCCCC--------------CCCCccccc------------cccccCCCCcccceeE
Q 004679 250 --PL-----------------TSCQKRMS--------------PPPCVNYFC------------PMHLSEHGRSSLHLTH 284 (737)
Q Consensus 250 --~~-----------------~~~~~~~~--------------~~~~~~~~~------------~~~~~~~~~~~~~i~~ 284 (737)
.. ..++.... ...+...-. |..-.-+||.. .|.+
T Consensus 452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~ 530 (764)
T KOG1063|consen 452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYA 530 (764)
T ss_pred ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce-eEEE
Confidence 00 00000000 000000000 11111134543 6999
Q ss_pred EEEcCCCCEEEEEeCC-----CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 285 VTFSPNGEEVLLSYSG-----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 285 v~~sp~g~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
++.+|+|+++++++.. ..|++|+..+......+..|.-.++.++|+|+.+-+..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 9999999999999874 47999999998888889999999999999998654433
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.2e-22 Score=195.06 Aligned_cols=223 Identities=16% Similarity=0.265 Sum_probs=180.1
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004679 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~ 100 (737)
-.+++.|+.|++|+ +..-....+|+.|.+.|..|++.. +.+++++.|++|+.|-++. ...+++ ..+..+..+.
T Consensus 82 ~aSGs~DG~VkiWn--lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gId 154 (433)
T KOG0268|consen 82 VASGSCDGEVKIWN--LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGID 154 (433)
T ss_pred hhccccCceEEEEe--hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccc
Confidence 45688999999999 444567889999999999999986 7799999999999999876 466666 2456777887
Q ss_pred EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
-+.. ++.+++|+. .|.|||.... .|+..+.--.+.|.++.|+|....+|++|..|++|.+||+++.
T Consensus 155 h~~~--~~~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 155 HHRK--NSVFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred cccc--cccccccCc--eeeecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 7766 588999986 4899999752 4577787778899999999988889999999999999999999
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
.+.. .++.. ..-+.|+|+| +...|++++.|..++.||++..+.
T Consensus 221 ~Pl~----------KVi~~----------------mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~---------- 263 (433)
T KOG0268|consen 221 SPLK----------KVILT----------------MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR---------- 263 (433)
T ss_pred Cccc----------eeeee----------------ccccceecCc-cccceeeccccccceehhhhhhcc----------
Confidence 8652 22222 2346799999 578999999999999999997651
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++.. +..+...|.+|+|||.|+.+++|+.|.+|+||.+..+
T Consensus 264 --p~~v--------~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 264 --PLNV--------HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred --cchh--------hcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 1111 2233336999999999999999999999999998875
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.8e-22 Score=180.81 Aligned_cols=241 Identities=16% Similarity=0.160 Sum_probs=188.7
Q ss_pred CCCCCccccccccccccccc-ccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccc
Q 004679 21 DTRPDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSAN 95 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~ 95 (737)
....+.|++|++....-... +++.+|+||.+||..++|.. -|.+||+++.||+|.||.-++++- ...+ ..|...
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~S 104 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSAS 104 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhccc
Confidence 34567789999988655554 78899999999999999976 799999999999999999888753 3334 679999
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-------------CcE
Q 004679 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-------------PHV 162 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-------------~~~ 162 (737)
|++++|.|...|-.|++++.||.|.|.+.+...+- ........|.-.|++++|.|.. .+.
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 99999999877889999999999999999864221 2245567899999999999841 146
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---CcEEEEEeCCCc
Q 004679 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAF 239 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~~l~t~s~Dg~ 239 (737)
|++|+.|..|++|+...+.-. .-.++.+|...|..++|.|.. ..+||+|+.||+
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred eeccCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 999999999999999876421 122356789999999999964 247999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+.||-.+.... ... ...+.. ....+..+.||+.|..|++++.|+.|.+|.-..
T Consensus 235 viIwt~~~e~e--~wk-----~tll~~-----------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 235 VIIWTKDEEYE--PWK-----KTLLEE-----------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEEecCccC--ccc-----cccccc-----------CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99998762210 000 011111 122589999999999999999999999997654
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=9.7e-21 Score=189.26 Aligned_cols=282 Identities=13% Similarity=0.163 Sum_probs=193.7
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE---EcccCccceEEEEE
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHS---IETGHSANVFCTKF 101 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~---~~~~h~~~V~~v~~ 101 (737)
-++-+.+|+ -++.+.....+.-++.|....|+| +.+++++++. +.+..|+.+++...+. |.+.....|.|++|
T Consensus 178 ~~h~lSVWd--Wqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWD--WQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred Cccccchhh--chhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 345566666 444455555556678899999999 5567777776 7999999998865543 32233478999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
.++ .-+++|..+|.|.||+..... ..+....|.+.|.++.... ++.+| +|+.|+.|..||-. .+
T Consensus 255 ~en---gdviTgDS~G~i~Iw~~~~~~----------~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 255 LEN---GDVITGDSGGNILIWSKGTNR----------ISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDN-YR 318 (626)
T ss_pred cCC---CCEEeecCCceEEEEeCCCce----------EEeEeeecCCceEEEEEec-CccEe-ecCccceEEecccc-cc
Confidence 998 358899999999999986421 2334448999999999987 54555 79999999999932 22
Q ss_pred CCCCCC-CCC--------CccceEEEeccCCceee-------ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 182 SCPPAG-SSH--------QECRNILLDLRCGAKRS-------LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 182 ~~~~~~-~~~--------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
....+. ... +....+++....+.+.. -....+|......++.+|+. +.++|++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-
Confidence 221111 000 11111222222111100 01123566788999999985 7999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 325 (737)
..+++-+. ....++.++.|+|.| .+++|+..|...+.|.++ +........+.+.+
T Consensus 397 -~~k~~wt~----------------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls 451 (626)
T KOG2106|consen 397 -DHKLEWTK----------------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTDNEQLS 451 (626)
T ss_pred -CCceeEEE----------------------EecCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEecCCceE
Confidence 33322111 112258899999999 899999999999999999 44444444499999
Q ss_pred eeeeccCCCCccCCCCCCCccccccccc
Q 004679 326 IMSFTPTLNGLELQPPIHDFLQTNIRVR 353 (737)
Q Consensus 326 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 353 (737)
++.|+|++..++..........+..+..
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 9999999999888887766665544444
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1e-21 Score=194.71 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=191.0
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
++|...|.+++.++||++||+|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-.. .+.|++++.|++|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC--ccceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999999999999 899999999999987 58899999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
. ..+.++.+|.+.|.+|.... -...+.+|+.|+++++|++......
T Consensus 276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql----------------------- 321 (479)
T KOG0299|consen 276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL----------------------- 321 (479)
T ss_pred h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-----------------------
Confidence 3 34788999999999998776 4466666779999999999543311
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004679 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.+.++...+.|++|-.+ ..|++|+.+|.|.+|++-..+++......+....... .. ....+|++++
T Consensus 322 ---ifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~--------~~-~~~~Witsla 387 (479)
T KOG0299|consen 322 ---IFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD--------PV-NGNFWITSLA 387 (479)
T ss_pred ---eeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCcc--------cc-ccccceeeeE
Confidence 12244678899999874 6999999999999999999988766543322111110 00 1113899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc---ceeeeecCCCCeeeeeccCCC
Q 004679 287 FSPNGEEVLLSYSGEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~~~ 334 (737)
..|...++++|+.+|.|++|-+..+-. +...+.....++.++|++++.
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 999999999999999999999999732 222334577888889988776
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=177.89 Aligned_cols=223 Identities=17% Similarity=0.225 Sum_probs=155.3
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
..|+||.+.|++|+|+.||+.|||++.|+.|+||+++.-. ++..- -.-+-.+.++|+|+. ..+++++-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc-~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDC-KSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCc-ceEEEEEccCCE
Confidence 4588999999999999999999999999999999987532 22111 111246789999997 667777878889
Q ss_pred EEEEecCCCCC-CCCCC-CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 119 VRLFNLSRFSG-RGLDD-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 119 I~iwd~~~~~~-~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
+++|-+..... ..... ..+.....-..|.-.+..+-... ++.+|++++.|..|.+|+++ ++..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L------------- 221 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLL------------- 221 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Ccee-------------
Confidence 99998764321 11100 00111122344666777777655 77899999999999999998 4422
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
..........+.++.+|+ ++++++++.--.+++|.+--.+.-. ++ ...+. ..+ .|
T Consensus 222 ------------~~idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG~-fq------ev~rv---f~L--kG 276 (420)
T KOG2096|consen 222 ------------QSIDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDGT-FQ------EVKRV---FSL--KG 276 (420)
T ss_pred ------------eeeccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCcc-hh------hhhhh---hee--cc
Confidence 111112234467889997 6999999999999999875333110 00 00000 111 45
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|.. .|..++|+|+.+.+++.+.||+.++||+.-
T Consensus 277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred chh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 665 699999999999999999999999999765
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=194.91 Aligned_cols=209 Identities=18% Similarity=0.287 Sum_probs=163.9
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEc-ccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
+.+.+| .|.+-|.++.+|...+++.||+. |-|+|||+.... .+..+. ..-...|.++...|+ |..|++|+.-
T Consensus 411 rq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGea 486 (705)
T KOG0639|consen 411 RQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEA 486 (705)
T ss_pred Hhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEecccc
Confidence 444455 48889999999999999999987 789999997431 222221 124567999999999 7999999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
.++.|||+...+.+. -..+..-...+..++.+| +.++.++|+.||.|.|||+.+..
T Consensus 487 stlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~--------------- 542 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT--------------- 542 (705)
T ss_pred ceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce---------------
Confidence 999999999765432 122222334567889999 66888899999999999999865
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
.+..+.+|...+.||.++++ +..|.||+-|.+||.||+|.+..+....
T Consensus 543 ----------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqhd--------------------- 590 (705)
T KOG0639|consen 543 ----------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHD--------------------- 590 (705)
T ss_pred ----------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhhh---------------------
Confidence 35667789999999999997 6899999999999999999887654421
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
....|.++-.+|++.+|++|-.++.|.+-....
T Consensus 591 -F~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 591 -FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred -hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 122599999999999999999888887765544
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=204.75 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=160.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEc--ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
...++|+.+++-..|+.++.. .++||-+.... +...+. +.....+..|+|.... .++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~-~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY-SNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccch-hhhheeecCCCcEEEEec
Confidence 345677788888888887764 77888775422 222220 1112346778898654 789999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
...... +.+..+..|...++++.|++..+++|++|+.||+|++||++..+..
T Consensus 118 nk~~rn-------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--------------------- 169 (839)
T KOG0269|consen 118 NKSIRN-------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--------------------- 169 (839)
T ss_pred Cccccc-------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------
Confidence 863211 2366788999999999999999999999999999999999987632
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
..+.+....|..++|+|..++.|+++.+.|.+++||+|... .|...+ ..|.+ +|.+
T Consensus 170 ----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~c 225 (839)
T KOG0269|consen 170 ----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVLC 225 (839)
T ss_pred ----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceEE
Confidence 22233567899999999888999999999999999999643 222222 33444 7999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.|+|++.+|++|+.|++|+|||+.+.
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCC
Confidence 999999999999999999999999874
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.4e-21 Score=179.81 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=127.3
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
....+.|.+++|||.. ..+++.++.|++|++|++... +.. . -.....|.++|.+++|+. ++..+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~-~ka~~~~~~PvL~v~Wsd-dgskVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------V-PKAQQSHDGPVLDVCWSD-DGSKVFSGGCD 93 (347)
T ss_pred CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------c-chhhhccCCCeEEEEEcc-CCceEEeeccC
Confidence 4567889999999953 678889999999999999863 221 1 255667999999999998 55888899999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
+.+++||+.+++.. ....|..+|..+.|-+.. ..+|+||+.|++|+.||.|..
T Consensus 94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred CceEEEEccCCCee--------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 99999999998632 223477889999998752 238999999999999999988
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.++.++..+. .+.++ +-...+++++..+..|.+|+++.+.
T Consensus 148 ~pv~t~~LPe----------------------RvYa~--Dv~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 148 NPVATLQLPE----------------------RVYAA--DVLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred Ceeeeeeccc----------------------eeeeh--hccCceeEEEecCCcEEEEEcCCCc
Confidence 8776653211 23333 3355689999999999999998764
No 125
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=186.10 Aligned_cols=217 Identities=18% Similarity=0.268 Sum_probs=165.5
Q ss_pred ccceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 41 SQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.....++-|.++|++++|+|.. +++|+|+.-|+|-+||+.+. .-+..+ ..|..+|.++.|+|.. ...+++.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ssS 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSSS 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeeec
Confidence 3445566788999999999954 58999999999999999522 124445 7899999999999986 78999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.||+|++-|+..... +.+..+......+.++.|+..++..+ .+..=|...+||+++....
T Consensus 255 yDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~----------- 314 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE----------- 314 (498)
T ss_pred cCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc-----------
Confidence 999999999986432 22334444556677888888665555 4555569999999987632
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
+.....|...|.+++++|..+.+|||++.|++.+|||+|....... | .+..
T Consensus 315 -------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~lst 365 (498)
T KOG4328|consen 315 -------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLST 365 (498)
T ss_pred -------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-ceec
Confidence 2222345668999999999999999999999999999997654332 0 1111
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
..|.. .|.++.|||++-.|++.+.|+.|+|||..
T Consensus 366 ~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 366 LPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 22333 59999999998889999999999999975
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=192.41 Aligned_cols=253 Identities=20% Similarity=0.298 Sum_probs=193.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
.++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..+..+ .+|-..|+|+.|+.| +.+|++|+.||.|.+|++...-.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence 478999999999999999999999999999999999888 899999999999999 79999999999999999864211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
. ......+|+..+..|+-+|+++...+.+ ...++|+|.|.++++||+..+..+ .. +
T Consensus 158 a-~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lt--------i 214 (476)
T KOG0646|consen 158 A-DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LT--------I 214 (476)
T ss_pred c-ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EE--------E
Confidence 1 1111357789999999999999998742 248889999999999999988643 10 1
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc-ccCCCCCCCCccccccccccCCCCcc-cceeEEE
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVT 286 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~ 286 (737)
.....+.+++.+|. +..+++|+.+|.|.+.++........ +.... .....+. ...+ .||.+ ..|+|++
T Consensus 215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~--~~~~~t~-~~~~--~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG--RHEENTQ-INVL--VGHENESAITCLA 284 (476)
T ss_pred ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccc--cccccce-eeee--ccccCCcceeEEE
Confidence 11357899999997 58999999999999999876542111 00000 0000000 0111 23433 4699999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
++-||..|++|+.||+|.|||+.+.+..........+++.+.+.|-.+..-.
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceec
Confidence 9999999999999999999999997766666657788888888776444333
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=5.4e-20 Score=191.02 Aligned_cols=187 Identities=12% Similarity=0.173 Sum_probs=130.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
+.++++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+|+ +..+ ++++.++.|++||...... .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~~----------~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATGEV----------I 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECCC--CCEEEEEECCCCeEEEEECCCCcE----------E
Confidence 357889999999999999999888887 444 34678999999 5655 6777899999999885321 2
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
..+..+.. +..++|+|++..++++++.|+.|++||+++.+.+ .. + . ....+.+
T Consensus 67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~--------~---~-~~~~~~~ 119 (300)
T TIGR03866 67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AE--------I---P-VGVEPEG 119 (300)
T ss_pred EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eE--------e---e-CCCCcce
Confidence 33333333 5678999955445555667899999999875421 00 0 0 0123567
Q ss_pred EEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-
Q 004679 221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY- 298 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~- 298 (737)
++|+|+ +.+++++..++ .+.+||.++++...... . . ..+..++|+|+|++|++++
T Consensus 120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~-~--~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------V-D--QRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------c-C--CCccEEEECCCCCEEEEEcC
Confidence 999997 57888887765 56778987654332211 0 0 1256789999999886665
Q ss_pred CCCeEEEEEcCCCC
Q 004679 299 SGEHVYLMDVNHAG 312 (737)
Q Consensus 299 ~dg~v~iwd~~~~~ 312 (737)
.++.|++||+.+++
T Consensus 177 ~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 177 IGGTVSVIDVATRK 190 (300)
T ss_pred CCCEEEEEEcCcce
Confidence 58999999998753
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=9.6e-21 Score=194.55 Aligned_cols=267 Identities=18% Similarity=0.272 Sum_probs=184.1
Q ss_pred CChhhhhhhccccCCCCCcccccccccccccccc----cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004679 8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK 83 (737)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~ 83 (737)
...|..-+...++..-...++.+.+++..-..++ .++.+..|..+|..+.|-|....|++++.|.++++||+.+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3567777888888888888999999986555554 235567899999999999966789999999999999999988
Q ss_pred EEEE--EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC-----------C--CCCC----Cceeec
Q 004679 84 LLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD-----------D--NAIT----PSALYQ 144 (737)
Q Consensus 84 ~~~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----------~--~~~~----~~~~~~ 144 (737)
++.. + .+|...|.+++|.|.. ...|++|+.||.|.|||++.......+ . ...+ -....+
T Consensus 134 l~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 134 LVGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eecceee-cccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8766 5 7999999999999986 789999999999999999864311110 0 0001 112223
Q ss_pred cCCCc----eeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004679 145 CHTRR----VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (737)
Q Consensus 145 ~h~~~----v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (737)
.+... |+.+.| . +...|++++. |+.|++||+++........... ...+.........+.
T Consensus 212 A~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------------~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------------SDKYPTHSKRSVGQV 275 (720)
T ss_pred cccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCc--------------ccCccCcccceeeeE
Confidence 34444 444555 4 5578888887 9999999999876442111110 001111112245667
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc-eeEEEEcCCCCEEEEEe
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSY 298 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~sp~g~~l~~g~ 298 (737)
++.....+ .+|++.+.|+.|++|+++....-... .| .++.... -..-..+|++.+|++|+
T Consensus 276 nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~-----------~~-------sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 276 NLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVA-----------EF-------SGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred EEEecCCC-CeEEEEecCCcEEEEeccccCcCchh-----------hc-------cCcccceeeeeeecCCCCceEeccC
Confidence 77777764 55555556999999999875421111 00 0111101 12234689999999999
Q ss_pred CCCeEEEEEcCCC
Q 004679 299 SGEHVYLMDVNHA 311 (737)
Q Consensus 299 ~dg~v~iwd~~~~ 311 (737)
.|..+++|.+.+.
T Consensus 337 sd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 337 SDEQAYIWVVSSP 349 (720)
T ss_pred CCcceeeeeecCc
Confidence 9999999998884
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9.8e-22 Score=206.06 Aligned_cols=223 Identities=16% Similarity=0.273 Sum_probs=180.3
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
.+..++|+. +.++|||++..|.|.+||+.. .+.+..| ..|+..++++.|++.. .++|++|+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 455677875 568999999999999999987 4555667 7899999999999987 889999999999999999975
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.. ..++.+....|+.+.|+|..+..|+++...|.+.+||+|.....
T Consensus 167 ~S----------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 KS----------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred cc----------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 43 45666788999999999988899999999999999999987632
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
...+..|.++|.|+.|+|+ ..+||||+.|+.|+|||+.+....... ++ +...++.+|.|
T Consensus 213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~--------tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKH--------TI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCcccee--------EE------------eecceeeeeee
Confidence 3445578999999999995 689999999999999999865432221 01 23346999999
Q ss_pred cCCCCE-EEEEeC--CCeEEEEEcCCCCcceeee-ecCCCCeeeeecc
Q 004679 288 SPNGEE-VLLSYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP 331 (737)
Q Consensus 288 sp~g~~-l~~g~~--dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~p 331 (737)
-|+..+ |++++. |-.|+|||++.+-.+...+ .+...++.++|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 998766 445444 7899999999977666544 4677777777765
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.4e-21 Score=199.31 Aligned_cols=259 Identities=18% Similarity=0.189 Sum_probs=207.3
Q ss_pred CCCcccccccccccccccc----cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccce
Q 004679 23 RPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANV 96 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V 96 (737)
+++-++.|++|+.-....+ ...+++.|.+-|+.|....+++.|++++.|-+|++|+...+ -+..++ ..|.+.|
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYV 120 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYV 120 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchh
Confidence 3566888999985444443 36678899999999999999999999999999999999877 466677 7899999
Q ss_pred EEEEE-eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004679 97 FCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (737)
Q Consensus 97 ~~v~~-sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v 174 (737)
.|+++ .++ ..++|+|+.|+.|.+||++.+..+............+. ++..+|++++..+ .+..|++|+..+.+++
T Consensus 121 kcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 121 KCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRL 197 (735)
T ss_pred eeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEE
Confidence 99999 666 58999999999999999997543222122222233444 8899999999998 6689999999999999
Q ss_pred EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004679 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
||.++.+.+ -...+|+.-|.++-.+++ +..+++++.||+|++||++..+.+.++
T Consensus 198 wDprt~~ki-------------------------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 198 WDPRTCKKI-------------------------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eccccccce-------------------------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeE
Confidence 999998743 223478889999999997 689999999999999999976544443
Q ss_pred cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
..|.. .|+++..+|+-.++++|+.||.|+.=|+.+.......+...+++..+..+..
T Consensus 252 --------------------~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~ 308 (735)
T KOG0308|consen 252 --------------------IVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH 308 (735)
T ss_pred --------------------EeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence 22444 3999999999999999999999999999997666666666777666665533
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=1.5e-20 Score=205.35 Aligned_cols=238 Identities=20% Similarity=0.314 Sum_probs=181.6
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCccceEEEEEe
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------------------~~~~~~~~~~h~~~V~~v~~s 102 (737)
+.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||.... .+++..+ .+|+..|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 45567788999999999999999999999999999999872 1245556 7899999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
|+ +.+|++++.|++|.||+.++. +.+..+.+|.+.|-.+.|+| -+++|++-+.|++|++|.+.....
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence 98 799999999999999999974 34788999999999999999 669999999999999999665332
Q ss_pred CCCCC---------------CCCCccceE------------EEeccCCceeeccCCCCCccceEEEEEecC---------
Q 004679 183 CPPAG---------------SSHQECRNI------------LLDLRCGAKRSLADPPKQTLSLKSCDISST--------- 226 (737)
Q Consensus 183 ~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--------- 226 (737)
...+- ...+++..+ +.-+..+.-..-..+-+|..++.++.|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 11000 000111000 001111222222345678889999999873
Q ss_pred ---CCc----EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004679 227 ---RPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 227 ---~~~----~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
.++ .+|+|+.|+.|-||.....+|+-.+. .-....|.+++|+|||..|++++.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------------------~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------------------NLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------------------hhhcCceeeeeEcCCCCeEEEEec
Confidence 121 78999999999999987766554331 111225999999999999999999
Q ss_pred CCeEEEEEcCCCC
Q 004679 300 GEHVYLMDVNHAG 312 (737)
Q Consensus 300 dg~v~iwd~~~~~ 312 (737)
||+|.++.+...+
T Consensus 346 DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 346 DGTVALIHFEEKE 358 (942)
T ss_pred CCeEEEEEcchHH
Confidence 9999999998743
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=187.34 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=187.9
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
-..+|.+|+|+.+.+.||.+-.||.|-||++...=. ...+..+....|.+++|++. ..|.+.+.+|.|.-||+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecccC
Confidence 347899999999999999999999999999987643 33442234578999999964 78999999999999999973
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
++...+....+.|++++.+| ....++.|+.||.+..++...++.. .
T Consensus 101 ----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~-----------------------~ 146 (691)
T KOG2048|consen 101 ----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT-----------------------Y 146 (691)
T ss_pred ----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE-----------------------E
Confidence 33667777889999999999 4578889999997777777665421 1
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC-cccceeEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR-SSLHLTHVT 286 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~ 286 (737)
-..+..++..+.+++|+|+ +..+++|+.||.|++||...++.+.... +.+..... ...-|+++.
T Consensus 147 ~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~--------------~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIIT--------------MQLDRLSKREPTIVWSVL 211 (691)
T ss_pred EeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEee--------------ecccccccCCceEEEEEE
Confidence 1223345688999999997 5789999999999999999887554211 01111111 222478888
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004679 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 347 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 347 (737)
|-.++ .|++|..-|+|.+||...+........+...+..++.++....+....-+...+.
T Consensus 212 ~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 212 FLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred EeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 88665 4899999999999999999988888888888888888888776666555554444
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.6e-20 Score=181.35 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=158.6
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~ 125 (737)
-.++|++|.|+|...+|++|+.|+.++||.++.. ..++.+ .-...+|.+.+|.|+ |. .+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeecc
Confidence 3578999999999999999999999999998743 345555 456789999999999 56 89999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 126 RFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
+..- .++..+.++. ..+....++| ++++|+..+..|.|.+....+++.+.
T Consensus 289 ~ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~-------------------- 339 (514)
T KOG2055|consen 289 TAKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT-------------------- 339 (514)
T ss_pred cccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh--------------------
Confidence 6432 2233334443 4567788899 55899999999999999988887441
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
.-...+.|..++|+.+ +..|++++.+|.|.+||++....+..+... | .-.=++
T Consensus 340 ------s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~------------------G--~v~gts 392 (514)
T KOG2055|consen 340 ------SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVDD------------------G--SVHGTS 392 (514)
T ss_pred ------eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEeec------------------C--ccceee
Confidence 0122467889999986 588888889999999999987655444221 0 112467
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++.+++|.||++|+..|.|.|||.++
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccch
Confidence 88899999999999999999999877
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-19 Score=160.50 Aligned_cols=211 Identities=22% Similarity=0.302 Sum_probs=159.5
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEeeCC--CCCEEEEEEC-CCc
Q 004679 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPET--SDELVVSGAG-DAE 118 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~-dg~ 118 (737)
+-|++.|.|.+|+|+|++||+|+.|++|++.-++...+ -..| .-|.+.|..++|..+. .+.+|++++. |..
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 45889999999999999999999999999976654322 1234 5699999999998643 2456776654 555
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
|++-|...++ +++.+.+|++.|.++--- ++-++++|+.|.+|++||++....+. .+-
T Consensus 165 iy~tdc~~g~----------~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~-----------~l~ 221 (350)
T KOG0641|consen 165 IYITDCGRGQ----------GFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVN-----------TLD 221 (350)
T ss_pred EEEeecCCCC----------cceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceee-----------ecc
Confidence 5555555432 378899999998776321 55899999999999999999875431 110
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
.. ..........|.+++..|. +++|++|-.|..+.+||++.+..++.+ +.|.
T Consensus 222 ~~-------~~~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~phs 273 (350)
T KOG0641|consen 222 ND-------FHDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HPHS 273 (350)
T ss_pred Cc-------ccCCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CCCc
Confidence 00 0011112357899999997 699999999999999999998877665 3344
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
. .|.++.|+|...|+++++.|.+|++-|++-
T Consensus 274 a-dir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 274 A-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred c-ceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 4 599999999999999999999999998775
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-19 Score=192.21 Aligned_cols=209 Identities=13% Similarity=0.153 Sum_probs=165.2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
+|+..-+.|+|.|+|++|++++.||.|++|+.... +....+ ..+...|.+++... .+|++|+.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~s----~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACYS----NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeecc----cceEEeeccceEEEeeCCC
Confidence 68889999999999999999999999999998765 444444 23778888887654 5899999999999999987
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
+... ..+...+-++++++|+. ++.+++.||.|-.|++.++.....
T Consensus 86 ~~~~----------~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~------------------------ 130 (933)
T KOG1274|consen 86 GEED----------TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ------------------------ 130 (933)
T ss_pred CCcc----------ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch------------------------
Confidence 5432 23444567899999998 778999999999999999887652
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004679 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.....+|..+|.++.|+|. +++||+.+-||.|+|||+.++.....+..-..... . .....+..++
T Consensus 131 -~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~------------~-~~s~i~~~~a 195 (933)
T KOG1274|consen 131 -EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE------------F-ILSRICTRLA 195 (933)
T ss_pred -heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCcccc------------c-cccceeeeee
Confidence 2334578899999999997 58999999999999999998775555432111100 0 1022478899
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 287 FSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|+|+|..+++...|+.|.+|+....
T Consensus 196 W~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred ecCCCCeEEeeccCCeEEEEccCCc
Confidence 9999999999999999999997764
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=177.01 Aligned_cols=247 Identities=21% Similarity=0.309 Sum_probs=202.2
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC------CC-------------
Q 004679 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS------------- 81 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~------~~------------- 81 (737)
-.+.+.+++..+|. +.+.+++.++.||.+.|++|+|++.+.++++++.|++-.||.. ..
T Consensus 163 ~gtASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 163 CGTASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred eeecccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 34578899999999 8889999999999999999999999999999999999999972 10
Q ss_pred ---------------------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 82 ---------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 82 ---------------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
...+..+ .+|...|.++.|... ++.+++++.|.+..+||+.++ +++
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v 307 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVV 307 (481)
T ss_pred hcccccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------cee
Confidence 0123344 689999999999988 799999999999999999974 347
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
..+.+|....+.++-+| ..+++++.+.|.+.++||++..- ..+.-+.+|...|++
T Consensus 308 ~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 308 NILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTS 362 (481)
T ss_pred ccccCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeE
Confidence 88999999999999999 66899999999999999999542 235566788999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004679 221 CDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
..|..+ ..+++|++|.+|++||++++. ++.++. ...+++.++.+..+..|+.--.
T Consensus 363 ~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIR----------------------tdS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 363 VVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIR----------------------TDSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred EEEecC--CceeecCCCceEEEeeeccccCcceeee----------------------cCCccceeEeecCCceEEeccC
Confidence 999985 589999999999999999765 333321 1225889999999899999999
Q ss_pred CCeEEEEEcCCCCccee-----eeecCCCCeeeeeccC
Q 004679 300 GEHVYLMDVNHAGGRAM-----RYTVGDASKIMSFTPT 332 (737)
Q Consensus 300 dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~p~ 332 (737)
+..|++||+.-.. +.. ..++...+.+.+|...
T Consensus 419 NRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 419 NRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEEecCCCc-cccCCcccccccceeeeeeecccc
Confidence 9999999998643 222 2345666677777653
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=172.65 Aligned_cols=208 Identities=18% Similarity=0.269 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------eEEEEEcccCccceEEEEEe-------eCCCCCEEEEE
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVSG 113 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~------------~~~~~~~~~h~~~V~~v~~s-------p~~~~~~l~sg 113 (737)
...+.|+|||.-|++-+.|..+++|++... +....+.-.....|...+|- |+ ..++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAVS 129 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeeec
Confidence 456789999999999999999999998521 01111111234567777777 44 4789999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc---eeEEEEecCCCcEEEEEeCCCcEEEEEc-CCCCCCCCCCCC
Q 004679 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSS 189 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~~l~s~s~Dg~I~vwdl-~~~~~~~~~~~~ 189 (737)
+.+.-|++||.-++..++ ......|.+. ..++.|+|+ +..|+ ++..+.|++||+ |.+......
T Consensus 130 sr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~D-Geqlf-aGykrcirvFdt~RpGr~c~vy--- 196 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPD-GEQLF-AGYKRCIRVFDTSRPGRDCPVY--- 196 (406)
T ss_pred cccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCC-CCeEe-ecccceEEEeeccCCCCCCcch---
Confidence 999999999998766543 2223334443 368999995 46664 456789999999 555422100
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004679 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (737)
.. ......+..+-+.+++|+|.+..++++|+....+-||.-....++..+
T Consensus 197 --------~t-------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--------------- 246 (406)
T KOG2919|consen 197 --------TT-------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--------------- 246 (406)
T ss_pred --------hh-------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------------
Confidence 00 001112345678899999998889999999999988887766654433
Q ss_pred ccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004679 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~ 311 (737)
.+|.+ .|+.+.|+++|+.|++|+. |..|.+||++..
T Consensus 247 -----ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 247 -----GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred -----cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 34554 5999999999999999998 789999999873
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.1e-21 Score=204.05 Aligned_cols=219 Identities=22% Similarity=0.383 Sum_probs=190.6
Q ss_pred ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004679 19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (737)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~ 98 (737)
.....++.+.++.+|. ..+...+..|.+|..+|.|+.|+++..+|++|+.+|+|++||++..+.++++ .+|...+.+
T Consensus 41 r~~~~Gg~~~k~~L~~--i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~s 117 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWA--IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITS 117 (825)
T ss_pred eeeccCCCceeecccc--ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcce
Confidence 4566788899999998 7777778889999999999999999999999999999999999999999999 899999999
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
+.|+|. +.++++|+.|+-+++||++.. .+...+.+|...|.+++|+| ++.++++++.|..+++||+.
T Consensus 118 v~f~P~--~~~~a~gStdtd~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 118 VDFHPY--GEFFASGSTDTDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred eeeccc--eEEeccccccccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccc
Confidence 999999 799999999999999999952 34788889999999999999 67999999999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCC
Q 004679 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (737)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (737)
.++. +..++.|+..+..+.|+|. .-+++.|+.|+++++||+++...+....
T Consensus 185 agk~-------------------------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~--- 235 (825)
T KOG0267|consen 185 AGKL-------------------------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK--- 235 (825)
T ss_pred cccc-------------------------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC---
Confidence 8873 4556678889999999997 4799999999999999999765443321
Q ss_pred CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004679 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (737)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d 300 (737)
.....|.+.+|+|++..+++|...
T Consensus 236 ------------------~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 ------------------PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ------------------CccCCceeeeecCCceeeecCchh
Confidence 112259999999999988888765
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-19 Score=171.53 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=194.3
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
..+++++++|+..... ....| .|..++.+++|.+ ...+++|+.||.|+++|+.++.... + ..|..+|.||.+++
T Consensus 31 ssWDgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-i-gth~~~i~ci~~~~ 104 (323)
T KOG1036|consen 31 SSWDGSLRLYDVPANS--LKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-I-GTHDEGIRCIEYSY 104 (323)
T ss_pred EeccCcEEEEeccchh--hhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-e-ccCCCceEEEEeec
Confidence 3489999999966553 33333 3889999999987 4569999999999999999987654 3 57999999999998
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
. ...+++|+.|++|++||.+.... ...+. ....|.++.. .++.|+.|+.|..+.+||+++....
T Consensus 105 ~--~~~vIsgsWD~~ik~wD~R~~~~----------~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 105 E--VGCVISGSWDKTIKFWDPRNKVV----------VGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred c--CCeEEEcccCccEEEEecccccc----------ccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccch
Confidence 8 58999999999999999995221 22222 3347888877 4578889999999999999987643
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
. ......-+..+.++++.|. +.-+++++-||+|.+=.+........-.. .-.|
T Consensus 169 ~-----------------------q~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skky---aFkC 221 (323)
T KOG1036|consen 169 F-----------------------QRRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKY---AFKC 221 (323)
T ss_pred h-----------------------hhccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhce---eEEe
Confidence 1 0111123457899999995 56889999999998877665421111000 0011
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
.+. ........++|++++|||-...|++|+.||.|.+||+.+.+....+......+..++|+.++..++.....
T Consensus 222 Hr~-----~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 222 HRL-----SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred eec-----ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 110 00112234579999999999999999999999999999977666666666778889999988877776543
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.4e-20 Score=178.55 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=168.4
Q ss_pred cceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CeEEEEEcccCccceEEEEEee
Q 004679 42 QERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~----------------~~~~~~~~~~h~~~V~~v~~sp 103 (737)
.....-+|.+.|+.+..++-+ .+.|+-+..|.|.|||+.. .+.+.++ .+|...=..++|||
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence 334445788999999888754 5677778999999999853 2455666 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
.. -..|++|.--+.|++|...++.-... ...+.+|+..|-.+.|+|....+|++||.||+|+|||+|.+...
T Consensus 222 ~~-~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 222 IK-TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred cc-ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 64 34688887778899999886432211 34566799999999999988899999999999999999988532
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
. .+. .+.|...|+.|.|+...+ +||+|+.||+++|||+|..+.- .+
T Consensus 294 ~----------------------~~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~p 339 (440)
T KOG0302|consen 294 A----------------------AVS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------QP 339 (440)
T ss_pred c----------------------eeE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------Cc
Confidence 1 111 156778999999999754 9999999999999999976532 11
Q ss_pred ccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+..| . .+..+|+++.|+| +...|++++.|..|.+||+.-..
T Consensus 340 VA~f-------k-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 340 VATF-------K-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceeE-------E-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 2222 1 2333799999999 45678888889999999997633
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.6e-20 Score=184.03 Aligned_cols=215 Identities=20% Similarity=0.284 Sum_probs=171.2
Q ss_pred cccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
.+|+.+|.+|+|+.+ .+.||+||.|.+|++||+.++++...+ ..|...|.+++|+|.. +..|++|+.|++|.+.|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence 479999999999985 468999999999999999999999998 6899999999999987 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
..... -..++ ..+.|-.++|.|.....++++..||+|+-+|+|....+
T Consensus 318 ~~~~s---------~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------------- 365 (463)
T KOG0270|consen 318 DPSNS---------GKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------------- 365 (463)
T ss_pred Ccccc---------CceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence 63321 12222 45779999999988889999999999999999987522
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
+.....|...|.++++++..+.++++++.|+.+++|++...++...... .-.-+...|.
T Consensus 366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-------------------~~~~~rl~c~ 424 (463)
T KOG0270|consen 366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-------------------SFKLGRLHCF 424 (463)
T ss_pred --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-------------------cccccceeec
Confidence 4455578889999999999899999999999999999976543222110 0111125566
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEEcCCCCccee
Q 004679 286 TFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAM 316 (737)
Q Consensus 286 ~~sp~g~-~l~~g~~dg~v~iwd~~~~~~~~~ 316 (737)
++.|+-. +++.|+..+.++|||+.+......
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 7777654 466677788899999998654433
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=3.7e-20 Score=179.03 Aligned_cols=229 Identities=17% Similarity=0.245 Sum_probs=172.9
Q ss_pred cccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEE---EEEcccCccceEEEEEeeCCCCCEEEEE
Q 004679 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
...+++.++.+|.+.=.+|+|||- -..|+||..-+.|++|...++.-. ..| .+|+..|..++|+|.. ...|++|
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 446888999999999999999993 335899999999999999887532 224 5799999999999987 7899999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004679 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+-||+|+|||++..... +....+.|.+.|+.|.|+..- .+|++|+.||++++||+|..+..
T Consensus 277 S~DgsIrIWDiRs~~~~--------~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKK--------AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCcc--------ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------
Confidence 99999999999975332 244558999999999999844 49999999999999999987632
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004679 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
..+..+..|..+|+++.|+|.....|++++.|..|.+||+..-.......... ...+....|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a--~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA--AEGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc--ccchhcCCceeEE
Confidence 34666778999999999999988899999999999999997544322111110 0112233333333
Q ss_pred CCCCcccceeEEEEcCCC-CEEEEEeCCCe
Q 004679 274 EHGRSSLHLTHVTFSPNG-EEVLLSYSGEH 302 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~ 302 (737)
.|..+. .+..|.|++.- .+|++.+.||.
T Consensus 404 VHqGQk-e~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 404 VHQGQK-EVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred Eecchh-HhhhheeccCCCCeEEEecccce
Confidence 332222 48889999864 45666666753
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=3.2e-18 Score=177.66 Aligned_cols=229 Identities=12% Similarity=0.165 Sum_probs=153.0
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
+.+.++.+.+|+. .+.+....+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+ ..+. .+..++|
T Consensus 6 s~~~d~~v~~~d~--~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~ 80 (300)
T TIGR03866 6 SNEKDNTISVIDT--ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFAL 80 (300)
T ss_pred EecCCCEEEEEEC--CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEE
Confidence 3456788999984 4556777777664 46789999999876 57778899999999998887776 3333 3567899
Q ss_pred eeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-cEEEEEcCC
Q 004679 102 VPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQ 179 (737)
Q Consensus 102 sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-~I~vwdl~~ 179 (737)
+|+ ++.+ +++..|+.|++||+.... .+..+. +...+.+++|+| ++.+++++..++ .+.+||..+
T Consensus 81 ~~~--g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 81 HPN--GKILYIANEDDNLVTVIDIETRK----------VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred CCC--CCEEEEEcCCCCeEEEEECCCCe----------EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC
Confidence 999 5655 455678999999998522 123332 233467899999 557777777664 467788876
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE-EEEeCCCcEEEEECCCCCCcccccCCC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRM 258 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (737)
.+.. .. +. ......+++|+|++ +++ +++..++.|++||+++++.+..+....
T Consensus 147 ~~~~--------------~~--------~~----~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 147 YEIV--------------DN--------VL----VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred CeEE--------------EE--------EE----cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 5421 00 00 01234578999985 555 455569999999999876544332110
Q ss_pred CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCCC
Q 004679 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHA 311 (737)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~~ 311 (737)
.. . . ........++|+|++++++++ +.++.+.+||+.++
T Consensus 200 ~~-----------~--~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 200 PG-----------V--H-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cc-----------c--c-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 00 0 0 000124468899999986665 44678999998764
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-18 Score=163.88 Aligned_cols=261 Identities=15% Similarity=0.188 Sum_probs=183.2
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004679 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
.+|.+-|+|+.|.+.|+++|+|+.|++|+|||.... .+.... +.|.+.|..|.|.+-.-|+.+++|+.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 379999999999999999999999999999997543 344555 689999999999875558999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCC------CC-------CC
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP------PA-------GS 188 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~------~~-------~~ 188 (737)
.-....... ....+....++......|+++.|.|.. +-.|++++.||.+++|+.-...... .+ ..
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 864221111 112234456677788899999999853 3478999999999999864332110 00 00
Q ss_pred CC---------------------------CccceEEEeccCC--ceeeccCCCCCccceEEEEEecCCC---cEEEEEeC
Q 004679 189 SH---------------------------QECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 236 (737)
Q Consensus 189 ~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~t~s~ 236 (737)
.+ .-....++....+ +-..+...+.++.+|++++|.|.-+ .+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 00 0112233333222 2345667788999999999999753 47999999
Q ss_pred CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|| |+||.++....-- ...+...+..+..+....+...+.+.+.|..+.|.-.|..|.+.+.||+|++|...-.
T Consensus 248 Dg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred Cc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 99 9999998532111 1111122223333333344445555557999999999999999999999999986653
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.6e-21 Score=198.85 Aligned_cols=238 Identities=16% Similarity=0.252 Sum_probs=200.1
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
+.+-.|...|.|+..-..++.+++|+.|..+.+|.+..--.+..+ .+|..+|.|+.|++. ..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeeee
Confidence 455679999999998778899999999999999999887777777 799999999999998 68999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004679 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+... +.++++.+|...+.++.|+| -+.++++|+.|+.+++||.+...+
T Consensus 99 leeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc--------------------- 146 (825)
T KOG0267|consen 99 LEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC--------------------- 146 (825)
T ss_pred hhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc---------------------
Confidence 9852 33788999999999999999 668889999999999999986542
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004679 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
...+.+|...+..+.|+|+ +.+++.++.|..++|||+..++.+..|. +|.+ .+.
T Consensus 147 ----~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef~--------------------~~e~-~v~ 200 (825)
T KOG0267|consen 147 ----SHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEFK--------------------SHEG-KVQ 200 (825)
T ss_pred ----eeeecCCcceeEEEeecCC-CceeeccCCcceeeeecccccccccccc--------------------cccc-ccc
Confidence 2233457788999999997 6899999999999999999888766653 2333 588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004679 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
.+.|+|..-.++.|+.|++|++||+++.............+....|+|+........+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 89999999999999999999999999866555555557788889999987766555443
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=167.68 Aligned_cols=230 Identities=13% Similarity=0.140 Sum_probs=141.0
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
..+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+...|...|+.+.--|+ ..+.+-+.|+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L 79 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL 79 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence 346778899999999999987765 8899999999999999998888774367889999998886 678999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-cEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
.+|++.. ......|+-.++++.|++. -+...+... ..-.++-+..... .+......+...+.
T Consensus 80 ~lw~ia~-------------s~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~-h~~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 80 ILWTIAY-------------SAFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDET-HKQDGGDTTQVQIA 142 (323)
T ss_pred EEEEccC-------------cceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchh-hhhccCccceeEcc
Confidence 9999985 2233446666677777652 122222211 1112221111110 00000000000000
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCc--EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~--~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
+ .......+.+.+..+....+. ++++|-.+|.+-+||+.++..+-.+.... +.......
T Consensus 143 d---------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~----------kv~~~~as 203 (323)
T KOG0322|consen 143 D---------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS----------KVESPNAS 203 (323)
T ss_pred C---------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc----------ccccchhh
Confidence 0 011123455666654433322 56778889999999999875433332110 00111112
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|. .++.++.|.+.-..=++|+.+..+..|+++.
T Consensus 204 h~-qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 204 HK-QPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred cc-CcceeeeechhhcCCcCCCccccceeeeecc
Confidence 33 3689999887666667777777888887765
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.8e-19 Score=186.73 Aligned_cols=249 Identities=14% Similarity=0.163 Sum_probs=203.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC-CCCCEEEEEECCCcEEEEecCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
.-.|.+++++|+|++||+|..-|+++||++...+....+ ..|+..|.|+.|+.. ....+|++++.|..|.+||+...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn- 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN- 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-
Confidence 457999999999999999999999999999998888888 799999999999853 22368999999999999999853
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
+.+++++.+|+..|+++.|...+. ..+++++.|+.|.+--.+..... ....
T Consensus 537 --------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--------------------~~f~ 588 (1080)
T KOG1408|consen 537 --------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--------------------RLFP 588 (1080)
T ss_pred --------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--------------------eecc
Confidence 355889999999999999987443 46789999988775433322110 0000
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
..........++.|+..|. ..++++++.|..|+|||+.++++.+.|... ++|.+ ....+..
T Consensus 589 r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv~l 649 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKVIL 649 (1080)
T ss_pred ccccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEEEE
Confidence 1111123456889999997 589999999999999999999988776543 34444 4667899
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004679 288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 347 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 347 (737)
.|.|-||++.+.|.++.++|..+++....+++|++.++.+.|.++-+.+-....+++++.
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence 999999999999999999999999999999999999999999999999888888877764
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=2.5e-18 Score=161.13 Aligned_cols=284 Identities=16% Similarity=0.182 Sum_probs=198.0
Q ss_pred CCCCcccccccccccccc----------cccc---eeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004679 22 TRPDVNHSLQMHSSLVRR----------LSQE---RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHS 87 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~----------~~~~---~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~ 87 (737)
-+++.++.+.+||..-.+ .+.+ ..-.+|+..|..+.|-| |.-++.+++-|.+++|||..+.+....
T Consensus 60 lSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~ 139 (397)
T KOG4283|consen 60 LSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD 139 (397)
T ss_pred eecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE
Confidence 357788889898842211 1110 11236889999999999 677888999999999999999988877
Q ss_pred EcccCccceEEEEEeeCCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE
Q 004679 88 IETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (737)
Q Consensus 88 ~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 166 (737)
| ..++.|.+-+|+|-... .++++|..|-.|++.|+..+. +.+++.+|.+.|.++.|+|...-+|++|
T Consensus 140 F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----------~sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 140 F--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----------FSHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred e--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----------ceeeeccccCceEEEEeccCceeEEEec
Confidence 7 36788999999996422 367778888999999999743 3789999999999999999888899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC-ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG-AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
+.||.|++||++...- |. ...|..++ ....+...+.|.+.+++++|..+ +.++++++.|..+++|+.
T Consensus 208 saDg~irlWDiRrasg----------cf-~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 208 SADGAIRLWDIRRASG----------CF-RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CCCceEEEEEeecccc----------ee-EEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeec
Confidence 9999999999997632 22 22233332 22334457789999999999997 689999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 325 (737)
.++..- +..+.+..-....+.. +. +. +-+...++.--.++.+.++++-++.....+..+...+.
T Consensus 276 ~~G~nt------------l~~~g~~~~n~~~~~~--~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~ 339 (397)
T KOG4283|consen 276 ESGRNT------------LREFGPIIHNQTTSFA--VH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN 339 (397)
T ss_pred ccCccc------------ccccccccccccccce--EE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence 877632 1111111111111111 22 22 22323233333357777777777777666666666777
Q ss_pred eeeeccCCCCccCCCCCCCc
Q 004679 326 IMSFTPTLNGLELQPPIHDF 345 (737)
Q Consensus 326 ~~~~~p~~~~~~~~~~~~~~ 345 (737)
+..|.|+.+...........
T Consensus 340 c~~~~~~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 340 CAAYRPDFEQCFTGDMNGNI 359 (397)
T ss_pred EEeecCchhhhhccccCCcc
Confidence 77777776655554444333
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-19 Score=178.46 Aligned_cols=252 Identities=16% Similarity=0.227 Sum_probs=193.5
Q ss_pred CCCCCccccccccccccccc--ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004679 21 DTRPDVNHSLQMHSSLVRRL--SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~ 98 (737)
-.+...++.+++|..--+.. .....+.|. .-.|++......++++|+..+.|+|||+... .++.+..+|++.|++
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTY 126 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEE
Confidence 44556677888887554432 223333343 3334444444589999999999999999954 444454899999999
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
+.++.. ..+|++++..|.|.|..+.++.. ...+.. ....|.-+.++|....+|.+++.+|.|.+||+
T Consensus 127 v~YN~~--DeyiAsvs~gGdiiih~~~t~~~----------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 127 VDYNNT--DEYIASVSDGGDIIIHGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred EEecCC--cceeEEeccCCcEEEEecccCcc----------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 999988 68999999999999999987432 223332 24566789999988889999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (737)
....+. ......|..+...++|+|.++.+|++.+.|..|.+||.+.......+..
T Consensus 195 ~g~sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y- 249 (673)
T KOG4378|consen 195 QGMSPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY- 249 (673)
T ss_pred cCCCcc------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-
Confidence 876643 4445568888999999999999999999999999999997654433321
Q ss_pred CCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeecCCCCeeeeeccCC
Q 004679 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTL 333 (737)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~p~~ 333 (737)
.| +.+.++|+++|.+|++|+..|.|+.||++..+.+.. ...+...++.++|.|..
T Consensus 250 ------------------~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 250 ------------------SH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ------------------cC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 11 588999999999999999999999999998776554 44567778999998875
No 150
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=8.5e-19 Score=182.12 Aligned_cols=240 Identities=16% Similarity=0.177 Sum_probs=194.2
Q ss_pred CCCcccccccccccccccccceeecccCCceEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNA-ISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~ 100 (737)
+++-++++++|+...+..-....+.+|.+-|.+ +++-+ ++-+|++|+.|+.|.+|...+...+..+ .+|+..|+|+.
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeee
Confidence 455678899999766666777889999998888 88876 5567999999999999999999999988 89999999999
Q ss_pred EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
...+ +. +++|+.|.++++|.... ....+.+|+..|++++.-|.+ .++|||.|++|++|.-.+
T Consensus 109 ~~~~--~~-~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~- 170 (745)
T KOG0301|consen 109 IGED--GT-LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT- 170 (745)
T ss_pred cCCc--Cc-eEecccccceEEecchh------------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-
Confidence 8777 34 99999999999998873 256689999999999999844 777999999999997532
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
.+..+.+|...|.++++-++ ..|++|+.||.|++|++. +..+.+.
T Consensus 171 --------------------------~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~-ge~l~~~------ 215 (745)
T KOG0301|consen 171 --------------------------LLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD-GEVLLEM------ 215 (745)
T ss_pred --------------------------hhhhhccchhheeeeEEecC--CCeEeecCCceEEEEecc-Cceeeee------
Confidence 25566778999999999985 489999999999999994 4332222
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
++|.. -|.++...+++..+++++.|++++||+.. .........+-.++..++-+.+
T Consensus 216 --------------~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 216 --------------HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred --------------eccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC
Confidence 66766 49999988888999999999999999987 3344444445455666655543
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1e-17 Score=163.98 Aligned_cols=214 Identities=17% Similarity=0.262 Sum_probs=155.4
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 50 ~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~---------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
..+|..+.|.++.. +||||+.|..|+||-+..+. ....+ ..|...|++|.|+|+ |++|++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 36899999999766 99999999999999886432 22334 689999999999999 8999999999999
Q ss_pred EEEecCCCCC----CCC--CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004679 120 RLFNLSRFSG----RGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 120 ~iwd~~~~~~----~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
.+|-...... .+. ....+.....+.+|...|..++|+| ++.++++++.|..+++||+..+..
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l----------- 157 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQL----------- 157 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecccee-----------
Confidence 9998762111 000 1112333456778999999999999 668999999999999999999873
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC--------CCCCCCcc
Q 004679 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--------MSPPPCVN 265 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~ 265 (737)
......|...+..++|.|. .+++++-+.|...+.+++...+.+..+... .......+
T Consensus 158 --------------~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 158 --------------LAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred --------------Eeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 3334567788999999997 589999999998888888766544333210 00111111
Q ss_pred ccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004679 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
.|....+ ..-...++|+|+|..|++...
T Consensus 223 LfhDeTl------ksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 223 LFHDETL------KSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eeecCch------hhhhhhcccCCCCcEEEcccc
Confidence 1111111 112567899999999988764
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.3e-17 Score=154.56 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=122.8
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
++|...|++++|+.+ |..|++++.|++|+||+++....+. .++++.-.. -+..+.+.|.|+-..+++++-..
T Consensus 83 KgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKE-----HRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhh-----hhHhhcccc-CCCceEEEECCCcceEEEEEccC
Confidence 799999999999999 8999999999999999998644322 111221111 22467899999877788888888
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
.++++|.+...+-- ......+-+| ...+...|...+..+-.... +.+|++++.|..|.+|+++ ++
T Consensus 155 ~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cc
Confidence 89999988765421 0000011111 12233345556666666654 6899999999999999999 66
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+..+... ...-...+.||+|++|++++.---|++|.+--
T Consensus 220 ~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 220 LLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred eeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 55444211 00244578999999999999988999997543
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.9e-18 Score=172.35 Aligned_cols=233 Identities=22% Similarity=0.332 Sum_probs=162.5
Q ss_pred cccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CeEEEEEcccCccceEEEEEeeCCCC
Q 004679 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPETSD 107 (737)
Q Consensus 36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--------~~~~~~~~~~h~~~V~~v~~sp~~~~ 107 (737)
..+++.+..+++.|.+.|+.++|+|-...|++|+.||.|++|++.. -+.+.+| .+|.++|.|+++.++ +
T Consensus 280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~ 356 (577)
T KOG0642|consen 280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--G 356 (577)
T ss_pred hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--c
Confidence 3445666678999999999999999999999999999999999932 2467788 799999999999999 7
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCC-CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004679 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
..+++|+.||+|+.|++. ......+... ......+.+|++.|+.+++++ ....|++|+.||+++.|+.....++.
T Consensus 357 ~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~-- 432 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCT-- 432 (577)
T ss_pred eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccc--
Confidence 999999999999999877 2322211111 122457889999999999998 55778899999999999987765410
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004679 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (737)
...+...+...++.|-.......++...-+.--++++...+.+..+.....+..
T Consensus 433 ----------------------f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~---- 486 (577)
T KOG0642|consen 433 ----------------------FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP---- 486 (577)
T ss_pred ----------------------cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc----
Confidence 000111122344444433223333333333333444444443333322211110
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.....+..+.++|.+...+++..|+.|+++|..++
T Consensus 487 ----------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 487 ----------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred ----------cccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 11224888999999999999999999999998874
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.8e-18 Score=189.93 Aligned_cols=272 Identities=19% Similarity=0.224 Sum_probs=200.7
Q ss_pred cCCCCCccccccccccccccc----ccceeecccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC------eEE
Q 004679 20 TDTRPDVNHSLQMHSSLVRRL----SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR------KLL 85 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~s~~g~~----lasgs~dg~V~vwd~~~~------~~~ 85 (737)
++.+-+...++.++....... ++...+. -...-+.|+|.+.|.. ||.|..||.|.+||...- ..+
T Consensus 31 ~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l 109 (1049)
T KOG0307|consen 31 FDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL 109 (1049)
T ss_pred cccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH
Confidence 344455666677766544443 3455554 2457889999997654 899999999999998752 234
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004679 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
.++ ..|++.|..+.|++.. +++|++|+.||.|.|||++..+... . ..-....+.|.+++|+....++|++
T Consensus 110 a~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~tP~------~--~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 110 ATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPETPF------T--PGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred hhh-cccCCceeeeeccccC-CceeeccCCCCcEEEeccCCcCCCC------C--CCCCCCcccceEeccchhhhHHhhc
Confidence 445 6899999999999996 7799999999999999999744221 0 1122356789999999888889999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEE
Q 004679 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARL 242 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~i 242 (737)
++.+|++.|||++..+++... ... .....+..++|+|++...+++++.|. .|.+
T Consensus 180 ~s~sg~~~iWDlr~~~pii~l----------------------s~~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKL----------------------SDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred cCCCCCceeccccCCCccccc----------------------ccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 999999999999998754111 111 11245788999999888888888764 6999
Q ss_pred EECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcceeeeec
Q 004679 243 YDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (737)
Q Consensus 243 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 320 (737)
||+|... +++.+ .+|.. .|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+...
T Consensus 237 WDlR~assP~k~~--------------------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 237 WDLRFASSPLKIL--------------------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred ecccccCCchhhh--------------------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 9998543 22221 33554 59999999966 88999999999999999998888777778
Q ss_pred CCCCeeeeeccCCC-CccCCCCCCCcc
Q 004679 321 GDASKIMSFTPTLN-GLELQPPIHDFL 346 (737)
Q Consensus 321 ~~~~~~~~~~p~~~-~~~~~~~~~~~~ 346 (737)
+.....+.|.|... .++...-.+.+.
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CcceeeeeecCCCcchhhhheecccee
Confidence 89999999999876 334444344333
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.5e-17 Score=155.59 Aligned_cols=199 Identities=13% Similarity=0.216 Sum_probs=151.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
..+|++-..|.|++||..+++.+..| +++...++.++|.....+..+.+|+.||+|++||++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--------~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--------RIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--------hee
Confidence 56888888999999999999999999 899999999999986447899999999999999999754422 344
Q ss_pred eccCC-CceeEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004679 143 YQCHT-RRVKKLAVEVGNPHVVWSAS----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (737)
Q Consensus 143 ~~~h~-~~v~~l~~~p~~~~~l~s~s----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (737)
...+. .+..+++... ..+++++|. .|-.|.+||+|..+.. ...-...|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----------------------l~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQL-----------------------LRQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccch-----------------------hhhhhhhccCc
Confidence 45555 4566676654 456776664 3568999999988742 01122357789
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEE
Q 004679 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 296 (737)
Q Consensus 218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~ 296 (737)
|++++|+|.++++|++|+.||.|.+||+..-..--. ....+ ..+..|.++.|+.++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa---------L~~vi---------N~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA---------LLHVI---------NHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhh---------HHHhh---------cccceeeeeeeecCCcceEEE
Confidence 999999999999999999999999999975321100 01110 112249999999877 45888
Q ss_pred EeCCCeEEEEEcCCCC
Q 004679 297 SYSGEHVYLMDVNHAG 312 (737)
Q Consensus 297 g~~dg~v~iwd~~~~~ 312 (737)
-+..+...+|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 8889999999999864
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=3.4e-17 Score=156.08 Aligned_cols=226 Identities=15% Similarity=0.212 Sum_probs=158.0
Q ss_pred ecccCCceEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEEcc-cCccceEEEEEeeCCC--CCEEEEEE
Q 004679 46 LEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSRK---LLHSIET-GHSANVFCTKFVPETS--DELVVSGA 114 (737)
Q Consensus 46 l~~H~~~V~~l~~s~-----~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~-~h~~~V~~v~~sp~~~--~~~l~sgs 114 (737)
..+|+.+|..++|++ +...+|+.+. ..+.||...... .++.+.. .|......++|+-+.. .-++|.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 346889999999985 2346667665 488999876543 3333322 3677788888987642 34788888
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.-|.|+|.|+... +....+.+|...|+.+.++|..+++++++|.|.+|++|++++...+
T Consensus 113 ~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv----------- 171 (385)
T KOG1034|consen 113 YLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV----------- 171 (385)
T ss_pred ceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence 9999999999863 2367788999999999999999999999999999999999998643
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC--CCCCCCccccccc--
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--MSPPPCVNYFCPM-- 270 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-- 270 (737)
..+....+|...|.++.|+++ +.+|++++.|..|++|++...+....+... ..+......|...
T Consensus 172 -----------~VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 172 -----------AVFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred -----------EEecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 123344578899999999997 579999999999999999854422222111 1111111111111
Q ss_pred cc----cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004679 271 HL----SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 271 ~~----~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
++ ...-|.. .|-|+.| -|.++++=+-++.|..|..
T Consensus 240 ~fp~fst~diHrn-yVDCvrw--~gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 240 HFPDFSTTDIHRN-YVDCVRW--FGDFILSKSCENAIVCWKP 278 (385)
T ss_pred ccccccccccccc-hHHHHHH--HhhheeecccCceEEEEec
Confidence 00 1111222 3555555 3577888888888888865
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.4e-18 Score=190.70 Aligned_cols=233 Identities=16% Similarity=0.196 Sum_probs=185.3
Q ss_pred CCcccccccccccc----cccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceE
Q 004679 24 PDVNHSLQMHSSLV----RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVF 97 (737)
Q Consensus 24 ~~~~~~~~~~~~~~----~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~ 97 (737)
+..+++|.+|+... .....+.++..|++.|..+.|++. +++||+|+.||.|.|||+.+-+.-... .....+.|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 44778999999543 345677788899999999999995 559999999999999999875544333 123467899
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCC--CceeEEEEecCCCcEEEEEeCCC---cE
Q 004679 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEVGNPHVVWSASEDG---TL 172 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~s~s~Dg---~I 172 (737)
+++|+..- ..+|++++.+|.+.|||++... ++-.+..+. ..+..++|+|++...+++++.|. .|
T Consensus 166 ~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~----------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 166 CLSWNRKV-SHILASGSPSGRAVIWDLRKKK----------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred Eeccchhh-hHHhhccCCCCCceeccccCCC----------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 99999875 6789999999999999999642 233333333 34789999998888888888764 69
Q ss_pred EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004679 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (737)
.+||+|..... +..+..|...|.++.|++.+..++++++.|++|.+|+.++++.+.
T Consensus 235 qlWDlR~assP------------------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 235 QLWDLRFASSP------------------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred EeecccccCCc------------------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 99999976533 344457888999999999988999999999999999999988766
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+. ..+.++..+.|+|... .+++++-||.|.|+.+....
T Consensus 291 ~~p---------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELP---------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecC---------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 553 2334799999999665 77778889999999998865
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=4.9e-18 Score=169.70 Aligned_cols=231 Identities=11% Similarity=0.133 Sum_probs=190.6
Q ss_pred hhhccccCCC------CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004679 14 MLDTRHTDTR------PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87 (737)
Q Consensus 14 ~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~ 87 (737)
|++.+.+.+. ++.-.++.+||....+......|..-.-.+.+++.+||.++.++|..||.|.|||+.+...+..
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence 5666666444 5567899999988888888788877667888999999999999999999999999999999999
Q ss_pred EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004679 88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 88 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
| ++|++.+.||.++++ |..|-+|+.|.+|+.||++.... +.. ....+.|.++..+| .+..++.|-
T Consensus 547 f-qGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrq----------lqq-hdF~SQIfSLg~cP-~~dWlavGM 611 (705)
T KOG0639|consen 547 F-QGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQ----------LQQ-HDFSSQIFSLGYCP-TGDWLAVGM 611 (705)
T ss_pred c-cCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhh----------hhh-hhhhhhheecccCC-Cccceeeec
Confidence 9 899999999999999 89999999999999999997432 111 12457899999999 668999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.++.+.+....... ......|+..|.++.|.+. ++++++.+.|+.+..|....
T Consensus 612 ens~vevlh~skp~--------------------------kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPE--------------------------KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred ccCcEEEEecCCcc--------------------------ceeecccccEEEEEEeccc-CceeeecCchhhhhhccCcc
Confidence 99988888766543 1122356788999999997 69999999999999998877
Q ss_pred CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004679 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
+..+... .....|.++.+|.|.++|++|+.|.+..+|.+
T Consensus 665 GasiFqs----------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 665 GASIFQS----------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccceeec----------------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 6544322 11225999999999999999999999988875
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=154.67 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=189.6
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004679 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
+.+=.++++.+|| ..++.+.+.|.+|..+|++++||+||++|+|++.|..|.+||+..|.+++.+. ..++|+.+.|
T Consensus 39 AvGc~nG~vvI~D--~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~ 114 (405)
T KOG1273|consen 39 AVGCANGRVVIYD--FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQW 114 (405)
T ss_pred eeeccCCcEEEEE--ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeee
Confidence 3355789999999 45555888999999999999999999999999999999999999999998883 6799999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
+|.. .+..+.+-.+..-.+-++..+....+ +...-........+..|++ .++++++|...|.+.++|..+.+
T Consensus 115 hp~k-~n~~va~~~~~sp~vi~~s~~~h~~L------p~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e 186 (405)
T KOG1273|consen 115 HPRK-RNKCVATIMEESPVVIDFSDPKHSVL------PKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLE 186 (405)
T ss_pred cccc-CCeEEEEEecCCcEEEEecCCceeec------cCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhe
Confidence 9986 55566665565566666654222211 0000000111122345777 77999999999999999998876
Q ss_pred CCCCCCCCCCccceEEEeccCCceeeccCCCCC-ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
.+ ..++.. ...|..+.|+.. +..|+.-+.|..||.|+++.......- ..
T Consensus 187 ~v-------------------------as~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~---~e- 236 (405)
T KOG1273|consen 187 CV-------------------------ASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD---GE- 236 (405)
T ss_pred ee-------------------------eeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc---CC-
Confidence 43 111111 256778888875 689999999999999998743211000 00
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecC-CCCeeeeeccCCCCccC
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLEL 338 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~ 338 (737)
+.....+.-. -...+..+++||.+|.|+++|+. ...++||....|.....+.+.. ...-.+.|+|....++.
T Consensus 237 ~e~~~K~qDv------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 237 VEPEHKLQDV------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred cChhHHHHHH------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 0000111000 01114778999999999999987 5689999999988777777764 77777889997666555
Q ss_pred C
Q 004679 339 Q 339 (737)
Q Consensus 339 ~ 339 (737)
.
T Consensus 311 i 311 (405)
T KOG1273|consen 311 I 311 (405)
T ss_pred c
Confidence 4
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=1.6e-17 Score=158.23 Aligned_cols=249 Identities=16% Similarity=0.212 Sum_probs=175.0
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCccceEEEE
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTK 100 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~--~~h~~~V~~v~ 100 (737)
++..+-|++-+ ..+.+..+.++||...|+.|.|+|+ .++|++|+.|..||+|++++..++..|- .+|.+.|.++.
T Consensus 111 ~G~~GvIrVid--~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 111 GGYLGVIRVID--VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ecceeEEEEEe--cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 34556666666 5566778889999999999999995 5799999999999999999999988872 47999999999
Q ss_pred EeeCCCCCEEEEEECCCcEEEEecCCCCCCC--C---------------CCCCCCCc-eeeccCCCceeEEEEecCCCcE
Q 004679 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRG--L---------------DDNAITPS-ALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~---------------~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
|+++ +.++++|+.|.+|++|++..++-.. . .....-|. .+..-|..+|-|+.|- +++
T Consensus 189 ~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ 263 (385)
T KOG1034|consen 189 FSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDF 263 (385)
T ss_pred EcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhh
Confidence 9999 7999999999999999998321100 0 00001111 1345688899999994 478
Q ss_pred EEEEeCCCcEEEEEcCCC-CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce--EEEEEecCCCcEEEEEeCCCc
Q 004679 163 VWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL--KSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
+++-|-++.|..|....- +.+..+. ....+..+ +..++-....+ ...+|+|- .++||.|...|.
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vk-p~es~~Ti-----------~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~ 330 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVK-PPESATTI-----------LGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGK 330 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccC-CCccceee-----------eeEeccCccceEEEEEeecHH-HHHHhhccCCCc
Confidence 889999999999987322 2111000 00111111 11111222233 34456675 579999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
|.+||++...+... .. .. +...+..|...+|+.||..|+..+.|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~----------tt-----l~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKC----------TT-----LT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccC----------ce-----EE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999997664211 00 01 22233469999999999999999999999999864
No 161
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=171.86 Aligned_cols=259 Identities=14% Similarity=0.171 Sum_probs=192.1
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
-+.++.+++|+.....-++ .++.-|...|.+++. ++.+|++|+.+++|.+|.+..++.-..+ ...+-++.+++|+-
T Consensus 31 cgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g 106 (933)
T KOG1274|consen 31 CGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSG 106 (933)
T ss_pred ecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEec
Confidence 3456778888855443222 333337778887775 4569999999999999999887754444 44578999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ |.+++.|+.|-.|++-++..... ...+.+|..+|.++.|+| .+++||+.+-||.|++||+..+...
T Consensus 107 ~--g~~iaagsdD~~vK~~~~~D~s~----------~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 107 S--GKMIAAGSDDTAVKLLNLDDSSQ----------EKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred C--CcEEEeecCceeEEEEeccccch----------heeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence 8 89999999999999999986443 578899999999999999 6799999999999999999987643
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004679 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
........ .... .....+..++|+|++ ..+++...|+.|++|+...+.....+..
T Consensus 174 ~tl~~v~k----------------~n~~-~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~------- 228 (933)
T KOG1274|consen 174 KTLTGVDK----------------DNEF-ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD------- 228 (933)
T ss_pred hhcccCCc----------------cccc-cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc-------
Confidence 11110000 0000 012356778999985 5777777899999999998775544321
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
..++. .+..+.|+|+|.||++++.||.|.|||+++-.. ......+.+++|.|..+.+.+..
T Consensus 229 -----------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 229 -----------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred -----------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence 11222 389999999999999999999999999998222 33356677788999877765533
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2e-16 Score=164.49 Aligned_cols=164 Identities=12% Similarity=0.139 Sum_probs=125.1
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeCC
Q 004679 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
-...+|.++||+.. .+.||.+-.||.|-||++...= -....+.++ ...|.+++|.+ + ..|++.+.+
T Consensus 23 ~~Ps~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w---------~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~s 89 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNW---------FLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLS 89 (691)
T ss_pred eeccceEEEEEecc--CCceeeeccCCcEEEEccCCCc---------eeeEEEecCCCCceeeEEEcc-C-CeEEeecCC
Confidence 35688999999999 4789999999999999998621 112333333 56799999996 4 456689999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
|.|.-||+.+.++. .......+.|++++.+|. +..+++|+.||.+..++.....
T Consensus 90 g~i~EwDl~~lk~~-------------------------~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~ 143 (691)
T KOG2048|consen 90 GSITEWDLHTLKQK-------------------------YNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDK 143 (691)
T ss_pred ceEEEEecccCcee-------------------------EEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCce
Confidence 99999999988743 111233578999999997 5899999999988888777554
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
...... -......|.+++|+|++..|++|+.||.|++||+.++.
T Consensus 144 I~~~r~-------------------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 144 ITYKRS-------------------LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred EEEEee-------------------cccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 322211 11223369999999999999999999999999999864
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.5e-17 Score=163.13 Aligned_cols=204 Identities=17% Similarity=0.233 Sum_probs=165.7
Q ss_pred hhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004679 12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET 90 (737)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~ 90 (737)
.-....+.+..+++.+++|++|+ +.+.++..++..|.+.|.+++|+| ...+|++|+.|++|.+.|.+.-...... -
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD--~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-w 326 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWD--VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-W 326 (463)
T ss_pred HhccccceeEEecCCCceEEEEE--cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-E
Confidence 33445677899999999999999 788889999999999999999999 5689999999999999999842221111 1
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004679 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
...+.|-.++|.|.+ ...++++..||+|+-+|++... +++..++.|.++|.++.+++..+.+++|++.|+
T Consensus 327 k~~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~---------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPG---------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred EeccceEEEEecCCC-ceeEEEecCCceEEeeecCCCC---------CceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 245789999999987 7788899999999999999754 558999999999999999998999999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
.|++|++....+.. +....-.-+...|.++.|+...+++.|+..+.++|||+-+..+
T Consensus 397 ~Vklw~~~~~~~~~-----------------------v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKS-----------------------VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eEEEEeecCCCCcc-----------------------cccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999998765320 0000001123677888888888999999999999999987654
Q ss_pred c
Q 004679 251 L 251 (737)
Q Consensus 251 ~ 251 (737)
+
T Consensus 454 V 454 (463)
T KOG0270|consen 454 V 454 (463)
T ss_pred H
Confidence 4
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=5.5e-17 Score=161.15 Aligned_cols=267 Identities=16% Similarity=0.150 Sum_probs=189.8
Q ss_pred CCccccccccccc--ccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEE
Q 004679 24 PDVNHSLQMHSSL--VRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCT 99 (737)
Q Consensus 24 ~~~~~~~~~~~~~--~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v 99 (737)
+.-.++|-+|+.- ......++-+..|.++|.+|.|+| +-..+++.+.||+|++-|+++......+. ......+.++
T Consensus 206 GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~ 285 (498)
T KOG4328|consen 206 GDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSL 285 (498)
T ss_pred ccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeec
Confidence 3445778888843 344556677889999999999999 55689999999999999998865433221 1244567788
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
.|+.+ ...++.+..=|...+||.+..... ...+.-|...|++++++|..+.+|+|++.|++++|||++.
T Consensus 286 d~~~e--~~~vl~~~~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 286 DFSAE--SRSVLFGDNVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred cccCC--CccEEEeecccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence 88887 456666666679999999975432 3445668889999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC----CCCCccccc
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQ 255 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~----~~~~~~~~~ 255 (737)
-..... .+.....|...|.+..|+|.++. |+|.+.|..|+|||.. ...+...+.
T Consensus 355 l~~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 355 LRGKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred hcCCCC---------------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee
Confidence 653210 12223457889999999999765 9999999999999984 222333332
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec--CCCCeeeeeccCC
Q 004679 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTL 333 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~~ 333 (737)
+... .+..- ..-..+|.|+..++++|..-..|-|+|-..++.+..+... ........|+|..
T Consensus 413 Hn~~---------------t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 413 HNNR---------------TGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred ccCc---------------ccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 2111 11111 2445789999999999999889999998875533332222 2334456788876
Q ss_pred CCccCC
Q 004679 334 NGLELQ 339 (737)
Q Consensus 334 ~~~~~~ 339 (737)
..++..
T Consensus 477 ~~~~aG 482 (498)
T KOG4328|consen 477 DTLAAG 482 (498)
T ss_pred cceecc
Confidence 644443
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-15 Score=160.82 Aligned_cols=239 Identities=18% Similarity=0.248 Sum_probs=182.5
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEEc--------------
Q 004679 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE-------------- 89 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g---~~lasgs~dg~V~vwd~~~~~~~~~~~-------------- 89 (737)
...|++|. ..+...++.|.+|..+++.+.+.|.. .++++++.||.|++||...+..++++.
T Consensus 36 ~~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~ 113 (792)
T KOG1963|consen 36 GNFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ 113 (792)
T ss_pred CCEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence 35677777 67788888999999999999999854 467899999999999998776665542
Q ss_pred --------------------------------------------------------------------------------
Q 004679 90 -------------------------------------------------------------------------------- 89 (737)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (737)
T Consensus 114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~ 193 (792)
T KOG1963|consen 114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK 193 (792)
T ss_pred hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccce
Confidence
Q ss_pred --------ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004679 90 --------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (737)
Q Consensus 90 --------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 161 (737)
..|...++|.+++|+ +.++++|..||.|.+|.--..+.. ..-...+.-|...|.+++|++ ++.
T Consensus 194 ~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G~ 264 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DGA 264 (792)
T ss_pred eeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CCc
Confidence 145666899999999 799999999999999975431110 112456777899999999999 668
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004679 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (737)
Q Consensus 162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~ 241 (737)
+|++|+..|.+.+|.+.+++. ...|.-...|..+.++|+ +.+.++...|+.|.
T Consensus 265 ~LlSGG~E~VLv~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLETGKK--------------------------QFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIH 317 (792)
T ss_pred eEeecccceEEEEEeecCCCc--------------------------ccccccCCeeEEEEEcCC-CCeEEEEecCceEE
Confidence 888999999999999998862 233445678999999997 58889999999999
Q ss_pred EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004679 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
+..+.+......+.+..++..... .+.. .-.+.++++|--+-++..+..|.|.+||+.+...
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k---------~~~~-~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTK---------TRPQ-SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST 379 (792)
T ss_pred EEeccchhhhhhccCccCCCcccc---------cccc-ccceeEEEcCCCCceeecCCCceEEEEeccccce
Confidence 998877665555443322211100 1111 1367789999777788999999999999998654
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=9.4e-17 Score=156.51 Aligned_cols=231 Identities=17% Similarity=0.253 Sum_probs=167.0
Q ss_pred ceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-------EEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 43 ERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.-.+.||+++|..++|+| +...||+|+.|.+|.||.+..+. .+..+ .+|...|--++|+|.. .+.|++++
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag 151 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAG 151 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhcc
Confidence 345779999999999999 67899999999999999987543 34455 7999999999999987 78999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|.+|.+|++.++.. +..+. |.+.|.++.|+. ++.+|++.+.|+.|++||.++++.+...
T Consensus 152 ~Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-------- 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-------- 211 (472)
T ss_pred CCceEEEEeccCCce----------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec--------
Confidence 999999999997543 34454 999999999999 6789999999999999999998854222
Q ss_pred eEEEeccCCceeeccCCCCCcc-ceEEEEEecCCCcEEEEEe---CCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004679 195 NILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~t~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (737)
..|.+ .-....|-.+ +..+-||. .+..+-+||....+.-..+ ..
T Consensus 212 -----------------~~heG~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~e---- 259 (472)
T KOG0303|consen 212 -----------------VAHEGAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QE---- 259 (472)
T ss_pred -----------------ccccCCCcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EE----
Confidence 11211 1122334443 45444443 4678999998765421110 00
Q ss_pred cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcc---eeeeecCCCCeeeeeccC
Q 004679 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~p~ 332 (737)
- .....|.---|.|+...++.++. |+.|+.|.+...... ...+...++.+.+.|.|.
T Consensus 260 ----l-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 260 ----L-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ----e-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 0 11123666678899988887776 999999999984411 123344666666666664
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.6e-16 Score=148.77 Aligned_cols=239 Identities=16% Similarity=0.250 Sum_probs=174.1
Q ss_pred ccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEc----ccCccceEEEEEeeCCCCCEE
Q 004679 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELV 110 (737)
Q Consensus 37 ~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-~~~~~----~~h~~~V~~v~~sp~~~~~~l 110 (737)
..+++++..|. .+-+.|.|+.|.|++..||+-. |..|.+|+++.+.. +..+. ..|....++-+|+|..+++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 33455666666 5677999999999999998776 78999999998765 33321 245677889999996668888
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCC
Q 004679 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (737)
Q Consensus 111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~ 190 (737)
++.+ |+++..||+++... ....-.+|...|..+.|+|....+|++|+.||.|++||.+..+.+
T Consensus 188 ~tt~-d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p------- 250 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP------- 250 (370)
T ss_pred EEeC-CCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-------
Confidence 7764 89999999996432 234456799999999999977789999999999999999987743
Q ss_pred CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC----CC----C
Q 004679 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----PP----P 262 (737)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~----~ 262 (737)
+...++|.-.++++.|+|...+++++|+.|..|.+|...+-.....+..+.. +. .
T Consensus 251 -----------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 251 -----------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred -----------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 6677889999999999999889999999999999998865442222221110 00 0
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~ 310 (737)
-.+.+....+.....+...|.+++||.-..++++. +.||.+.|=.+..
T Consensus 314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 00111111111222223369999999877776655 6699999876654
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=149.19 Aligned_cols=232 Identities=16% Similarity=0.279 Sum_probs=175.1
Q ss_pred ccCCceEEEEEcCCC-----CEEEEEeCCCcEEEEECCC--CeEEE--EE----cccCccceEEEEEeeCCCCCEEEEEE
Q 004679 48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLLH--SI----ETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g-----~~lasgs~dg~V~vwd~~~--~~~~~--~~----~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.|..+++.+-|.|+. .+|||++. .+|+|.+.. .+... .+ ...+..++++..|+.-. .+++.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588999999999975 36777764 799999873 22111 11 13467899999999865 78999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
-|.++.|||+..+... ..-..+-+|...|..|+|...+.++|++.+.||++++||+|..+..
T Consensus 171 iDTTCTiWdie~~~~~-------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG-------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeecccc-------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 9999999999974110 0123456799999999999877789999999999999999987633
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCC-CcccccCCCCCCCCccccccccc
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
.++ ...+....++..++|++.+++++|+-..| ..|.|.|+|.-. ++..+
T Consensus 233 TII-----------YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------------------ 283 (364)
T KOG0290|consen 233 TII-----------YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------------------ 283 (364)
T ss_pred eEE-----------ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------------------
Confidence 222 22233356788999999999999987665 579999998532 21111
Q ss_pred cCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc-----ceeeeecCCCCeeeeeccC
Q 004679 273 SEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~p~ 332 (737)
.+|.. .|+.++|.| ....|.+++.|..+-+||+..... +...+..++.++.+.|+|.
T Consensus 284 --~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 284 --RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred --hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 34554 699999999 567899999999999999987543 4455667888999999875
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-16 Score=159.42 Aligned_cols=213 Identities=17% Similarity=0.240 Sum_probs=172.2
Q ss_pred ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004679 19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (737)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~ 98 (737)
....+.+..+.++||+ .+.....+.+++|+..|+++.++...++||+++..|.|.|..+.++.....|..+....|.-
T Consensus 92 ~y~~sgG~~~~Vkiwd--l~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWD--LRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehh--hHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 3456678889999999 45666778899999999999999999999999999999999999998877774344566779
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
+.|+|.. ..+|.+++.+|.|.+||+.... ........|..+...|+|+|.+..+|++.+.|+.|.+||.+
T Consensus 170 l~ys~sk-r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 170 LRYSPSK-RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eeccccc-ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 9999986 6678899999999999998532 22455678999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCC
Q 004679 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR 257 (737)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~ 257 (737)
..+... .+ ....+...++|.++ |.+|++|...|.|..||+|..+ ++..+
T Consensus 240 s~~s~~----------~l----------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--- 289 (673)
T KOG4378|consen 240 SQASTD----------RL----------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVR--- 289 (673)
T ss_pred cccccc----------ee----------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEe---
Confidence 665320 01 12346789999997 6899999999999999999654 22221
Q ss_pred CCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004679 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
+.|.. .|++++|-|..
T Consensus 290 -----------------sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 290 -----------------SAHDA-SVTRVAFQPSP 305 (673)
T ss_pred -----------------eeccc-ceeEEEeeecc
Confidence 23444 49999998875
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=175.24 Aligned_cols=129 Identities=26% Similarity=0.485 Sum_probs=117.1
Q ss_pred cccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE
Q 004679 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (737)
Q Consensus 32 ~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~ 111 (737)
.-.+.+++.+.++.|.||..+|.|..|...|.++++|+.|..|+||.+++..++... .+|.+.|+.++.+.+ ..+++
T Consensus 172 kPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~ia 248 (1113)
T KOG0644|consen 172 KPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIA 248 (1113)
T ss_pred CcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhh
Confidence 333567888999999999999999999999999999999999999999999999999 899999999999988 57899
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
+++.|..|++|.+... .++..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 249 aaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hcccCceEEEEecCCC----------chHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9999999999999863 4588899999999999999932 78899999999988
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=6e-16 Score=145.17 Aligned_cols=205 Identities=14% Similarity=0.233 Sum_probs=155.0
Q ss_pred ccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 48 ~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.+..+++++.|+. +.++|.+++-|.+..|||++++.. +++-+-+|..+|..++|...+ -+.|++++.||.|++||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence 3567999999997 788999999999999999998743 333337899999999999965 689999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+..+.... +..-..-..+...++|++++.+++++-..| ..|.+.|+|....+
T Consensus 227 R~leHSTI-------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp-------------------- 279 (364)
T KOG0290|consen 227 RSLEHSTI-------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP-------------------- 279 (364)
T ss_pred cccccceE-------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc--------------------
Confidence 97544211 111111245778899999999999987665 56999999987533
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004679 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
+.....|...|++++|.|.....|+++++|..+.+||+...-.-.. . .++. . .. .+..|+
T Consensus 280 ----va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-----~--dPil-----a---y~-a~~EVN 339 (364)
T KOG0290|consen 280 ----VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-----E--DPIL-----A---YT-AGGEVN 339 (364)
T ss_pred ----eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-----C--Cchh-----h---hh-ccceee
Confidence 6667789999999999999899999999999999999985432000 0 0000 0 01 122499
Q ss_pred EEEEcC-CCCEEEEEeCC
Q 004679 284 HVTFSP-NGEEVLLSYSG 300 (737)
Q Consensus 284 ~v~~sp-~g~~l~~g~~d 300 (737)
.+.|+| .+.+|+++...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 999997 56677776654
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=155.36 Aligned_cols=252 Identities=14% Similarity=0.199 Sum_probs=185.2
Q ss_pred CCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccC-CceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004679 2 ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (737)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~lasgs~dg~V~vwd~~ 80 (737)
++||+....|.+ ...+.--..+-.+.+..|+....+...++.+.|+. ..+..+.++|++++|+..+..|.|.|-...
T Consensus 256 ~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 256 EKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred ccCccceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence 456666555555 11112222233455677887777777888888876 457788999999999999999999999999
Q ss_pred CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce--eEEEEecC
Q 004679 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVG 158 (737)
Q Consensus 81 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~ 158 (737)
+++.+..+. -.+.|..++|+.+ +..|++++.+|.|.+||++... ++..+. ..+.| ++++.++
T Consensus 334 T~eli~s~K--ieG~v~~~~fsSd--sk~l~~~~~~GeV~v~nl~~~~----------~~~rf~-D~G~v~gts~~~S~- 397 (514)
T KOG2055|consen 334 TKELITSFK--IEGVVSDFTFSSD--SKELLASGGTGEVYVWNLRQNS----------CLHRFV-DDGSVHGTSLCISL- 397 (514)
T ss_pred hhhhhheee--eccEEeeEEEecC--CcEEEEEcCCceEEEEecCCcc----------eEEEEe-ecCccceeeeeecC-
Confidence 999998883 5788999999988 6888888889999999999742 244443 23333 4566667
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC--
Q 004679 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-- 236 (737)
Q Consensus 159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-- 236 (737)
++.+||+|+..|.|.|||..+.... .....+.....-...|++++|+|+ .++||.+|.
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s-------------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~ 457 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFAS-------------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVK 457 (514)
T ss_pred CCceEEeccCcceEEEeccchhhcc-------------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhcc
Confidence 6789999999999999997654311 112234444445678999999997 588888774
Q ss_pred CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+..+|+-.+.+......++... ..-+.++||+|||.+.+++.|..+|.|.+|.+.
T Consensus 458 knalrLVHvPS~TVFsNfP~~n------------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 458 KNALRLVHVPSCTVFSNFPTSN------------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEeccceeeeccCCCCC------------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5788888887765554443221 112259999999999999999999999999875
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.5e-16 Score=159.52 Aligned_cols=166 Identities=19% Similarity=0.293 Sum_probs=120.8
Q ss_pred CEEEEEeCCCcEEEE--ECCCC--------------------eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 63 SLLISGSDDTHINVW--SYSSR--------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 63 ~~lasgs~dg~V~vw--d~~~~--------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
..+++...+...++| ++... ....++ ..|...|..++|.|. ...|++|+.||+|+
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl-~s~~d~ir~l~~~~s--ep~lit~sed~~lk 319 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTL-RSHDDCIRALAFHPS--EPVLITASEDGTLK 319 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeee-ecchhhhhhhhcCCC--CCeEEEeccccchh
Confidence 456667777777888 33211 111123 468889999999998 58999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+|++.. .........+++.++.+|.++|.|+++.+ +++.+++|+.||+|+.|++....-. .+. ++
T Consensus 320 ~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp-------~ds----~d- 384 (577)
T KOG0642|consen 320 LWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDP-------DDS----YD- 384 (577)
T ss_pred hhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCc-------ccc----cC-
Confidence 999943 22223344678999999999999999988 7789999999999999988733211 000 00
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
.......+.+|+..++.+++++. .+.|++++.||++|.|+.....+
T Consensus 385 ---p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 385 ---PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred ---cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc
Confidence 00112234578899999999997 57899999999999999876543
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=149.01 Aligned_cols=251 Identities=17% Similarity=0.180 Sum_probs=177.9
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCc-cceEEEEE
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKF 101 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~-~~V~~v~~ 101 (737)
..+.+++|+ -.+++....|++|...++.++|.. .+..+.+|+.||+|++||++.......+. ..+. .+..|++.
T Consensus 48 Sngsv~lyd--~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 48 SNGSVRLYD--KGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred cCCeEEEEe--ccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 357788988 344788899999999999999987 45788999999999999999876555443 2333 46667666
Q ss_pred eeCCCCCEEEEEEC----CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 102 VPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 102 sp~~~~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
+-. +.++++|.. |-.|.+||++..+.. .-.....|.+.|+++.|+|.++++|++||.||-|.+||+
T Consensus 126 nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 126 NCK--KNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred cCc--CCeEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 645 578888754 678999999974421 123456799999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (737)
.....- + .+...-.+...|.++.|.......+.+-+......+|+++.+.....+..+
T Consensus 196 ~~d~Ee--------D--------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 196 KKDNEE--------D--------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred CCCcch--------h--------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence 876311 0 011111234568889999876567888899999999999888755444322
Q ss_pred CC-------------------C---------CCCcc---ccc-----c-----ccccCCCCcccceeEEEEcCCCCEEEE
Q 004679 258 MS-------------------P---------PPCVN---YFC-----P-----MHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (737)
Q Consensus 258 ~~-------------------~---------~~~~~---~~~-----~-----~~~~~~~~~~~~i~~v~~sp~g~~l~~ 296 (737)
.. + ..+.. .|. + .....++++..-|+++.|...+..+++
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeec
Confidence 00 0 00000 000 0 000113333345788888888999999
Q ss_pred EeCCCeEEEEEcCC
Q 004679 297 SYSGEHVYLMDVNH 310 (737)
Q Consensus 297 g~~dg~v~iwd~~~ 310 (737)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=6.3e-14 Score=152.24 Aligned_cols=208 Identities=28% Similarity=0.449 Sum_probs=154.9
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEccc-CccceEEEEE-eeCCCCC-EEEEEEC-CCcE
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV 119 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~-h~~~V~~v~~-sp~~~~~-~l~sgs~-dg~I 119 (737)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .. +...+..+.+ +++ +. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence 466899999999999999999999999999999999886 66666 34 3347777777 666 45 5555444 9999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
.+|+.... ......+..|...|..+.|+|. +..+++++. |+.+++|++.....
T Consensus 137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------- 190 (466)
T COG2319 137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKP---------------- 190 (466)
T ss_pred EEEEecCC---------CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCce----------------
Confidence 99999851 1225677889999999999994 457777775 99999999987432
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
+.....|...+.+++|+|++...+++++.|+.|++||...+..+.. .+ .+|.
T Consensus 191 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-----------------~~--~~~~ 242 (466)
T COG2319 191 ---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-----------------TL--SGHS 242 (466)
T ss_pred ---------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-----------------ec--CCCC
Confidence 2222236788999999987432555559999999998875443321 00 2233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
. .. -..|+|++.++++++.|+.+++|++...
T Consensus 243 ~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 243 D-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred c-ce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 2 12 2289999988999999999999998874
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=145.52 Aligned_cols=239 Identities=16% Similarity=0.179 Sum_probs=175.6
Q ss_pred CceEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--Ccc---ceEEEEEeeCCCCCEEEEEECCCc
Q 004679 51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSA---NVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 51 ~~V~~l~~s-------~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~---~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
+.|...+|- |+..++|+.+.+.-|.+||..+|+....+ .+ |.. ...+++|+|+ |.+|++| ....
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrc 180 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRC 180 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCC--CCeEeec-ccce
Confidence 467777775 56789999999999999999999987776 33 332 4578999999 7888766 5789
Q ss_pred EEEEecCCCCCCCCCCCCCCCceee-----ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004679 119 VRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
|++||+..+...+ ++... .+..+.|.+++|+|-+...++.++...++-++.-....+.
T Consensus 181 irvFdt~RpGr~c-------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---------- 243 (406)
T KOG2919|consen 181 IRVFDTSRPGRDC-------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---------- 243 (406)
T ss_pred EEEeeccCCCCCC-------cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------
Confidence 9999996533322 12222 2347788999999988889999999999999887766533
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECCCCC-CcccccCCCCCCCCcccccccc
Q 004679 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
....+|.+.|+.++|.+++ +.|.+|. .|..|.+||+|... ++..+...
T Consensus 244 ---------------~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh-------------- 293 (406)
T KOG2919|consen 244 ---------------QLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERH-------------- 293 (406)
T ss_pred ---------------eeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhh--------------
Confidence 2233678999999999985 6666665 57899999999543 32222110
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-ceeeeecCCCCeeeeeccCCCCccCCCCCCC
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTLNGLELQPPIHD 344 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 344 (737)
.+... .-.-....|++++|++|+.||.|++||+++... +.........++.++++|..+.++.......
T Consensus 294 ---v~~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 294 ---VGDTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred ---ccCcc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence 01111 122356679999999999999999999999554 5566677899999999998877776655433
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-14 Score=160.03 Aligned_cols=225 Identities=18% Similarity=0.162 Sum_probs=156.3
Q ss_pred ccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCccceEEEEEeeCCCCCEE
Q 004679 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELV 110 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~~~l 110 (737)
++..+.+|..|...|..++.++. +.+++||+.||+|++||..+. +...++ ......+.++.+.+. ++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CCeE
Confidence 45677788899999999999875 599999999999999998642 222333 234678899999998 7999
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCCCcee--eccCCCceeEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004679 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAG 187 (737)
Q Consensus 111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~-~l~s~s~Dg~I~vwdl~~~~~~~~~~ 187 (737)
|.++.||.|.+.++......... ...... .+.....|...++...... .++.+..-+.|..||++.....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~---- 1186 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA---- 1186 (1431)
T ss_pred EEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----
Confidence 99999999999999863221100 000111 1111223333344433333 7778888899999999876422
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004679 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
| ........+.|++++.+|. +++++.|...|.+-+||+|-..++..+..+
T Consensus 1187 ----------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P---------- 1236 (1431)
T KOG1240|consen 1187 ----------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHP---------- 1236 (1431)
T ss_pred ----------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCc----------
Confidence 1 1112233478999999997 589999999999999999988777665432
Q ss_pred ccccccCCCCcccceeEEEEcCCC---CEEEEEe--CCCeEEEEEcCCCCc
Q 004679 268 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSY--SGEHVYLMDVNHAGG 313 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g---~~l~~g~--~dg~v~iwd~~~~~~ 313 (737)
+. .+|+.+..+|.. ...++++ ..+.|.+|++.++.+
T Consensus 1237 ---------~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1237 ---------AR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred ---------cc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 22 257777777633 4555444 478999999999753
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=3.6e-14 Score=152.65 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=136.8
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 151 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 151 (737)
+.+.||++......... ..-...|.|++|+|.. +++++.|..+|.|.+||++....... .........|..+++
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeE
Confidence 47899999876222222 3467899999999987 89999999999999999997544210 111223446899999
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004679 152 KLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (737)
Q Consensus 152 ~l~~~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (737)
.+.|...-. .-+++++.||.|..|+++.-..+......... ............+++++|.+.+++.
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~-------------~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK-------------KHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc-------------cccccccccccceeeEeeccCCCce
Confidence 999976321 34779999999999988776543211111000 0011111234578999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
|++|+.+|.|.-=+....+.-.. ..+.+ ...+..+.++|..+.++|-+..++..+.|-+|+||.-.
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~~--~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPE-----------VSYKG--HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred EEEEcCCcEEEEEeccCCccccc-----------ccccc--cccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 99999999987744433321110 00000 00112233379999999988888888889999999765
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=3.7e-13 Score=146.13 Aligned_cols=229 Identities=27% Similarity=0.410 Sum_probs=167.4
Q ss_pred cccccccccccccccccceeecccC-CceEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CeEEEEEcccCccceEEEE
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTK 100 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~-s~~g~-~lasgs~-dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~ 100 (737)
.+..+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+|+... ......+ ..|...|.+++
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 162 (466)
T COG2319 85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLA 162 (466)
T ss_pred CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEE
Confidence 56778888843332 3556666644 37888888 88887 5555444 99999999998 6677777 78999999999
Q ss_pred EeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
|+|+ +..+++++. |+.+++|++... ..+..+..|...|.+++|+|.+..++++++.|+.|++||...
T Consensus 163 ~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 163 FSPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred ECCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 9999 578888875 999999999862 236677779999999999985443666669999999998774
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRM 258 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~ 258 (737)
+..... ....|.... ...|+|++ ..+++++.|+.+++|+++.... +..+
T Consensus 231 ~~~~~~------------------------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~---- 280 (466)
T COG2319 231 GKLLRS------------------------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL---- 280 (466)
T ss_pred CcEEee------------------------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence 432100 122233332 22788875 7888999999999999986553 1110
Q ss_pred CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004679 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
.+| ...+.++.|+|++..+++++.|+.+.+|+..+.....
T Consensus 281 ----------------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 281 ----------------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred ----------------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 112 2259999999999999998889899999888765433
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.7e-15 Score=152.67 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=120.9
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|++.|.||...|. |..|++|+.||+|+||.+.++. | +..+. ..+.|.||+|+|.....++.....
T Consensus 397 rGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgR--c--------vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATGR--C--------VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecce--E--------EEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 799999999999997 8999999999999999999743 2 55554 456899999999655555555555
Q ss_pred CcEEEEEcCCCCCCCC------CCC----CCCccceEEEeccCC--ceeeccCCCCCccceEEEEEecCCCcEEEEEeCC
Q 004679 170 GTLRQHDFRQGSSCPP------AGS----SHQECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 237 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~------~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D 237 (737)
..+.+.+-.-+..+.. ... .........|.-... ....+...-.|...|..+.|+.. |.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~ 542 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPD 542 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccC
Confidence 5577766544422100 000 001111122221100 00012222346678899999996 6899988654
Q ss_pred ---CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 238 ---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 238 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
..|.|.++.......-+ ....+.|.++.|+|...+|++++.. .|+|||+..
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF---------------------~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k 596 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPF---------------------RKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK 596 (733)
T ss_pred CCcceEEEEecccccccCch---------------------hhcCCceeEEEecCCCceEEEEecc-ceEEEehhH
Confidence 56888888654322111 0122258999999999999999876 899999876
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=1.3e-14 Score=150.07 Aligned_cols=176 Identities=18% Similarity=0.324 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
.|..++|-|||..|+.+.. ..+.|||...|..+.++ ++|++.|.|++|+.+ |.++++|+.|..|.+|..... +
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE-G-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE-G-- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc-c--
Confidence 8999999999987776654 48999999999999999 899999999999999 899999999999999987641 1
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004679 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
+.. ..|.+.|.|+.|+| -.+.|++|+.. ..-+|........ .
T Consensus 87 --------~Lk-YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~--------------------------K- 128 (1081)
T KOG1538|consen 87 --------ILK-YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS--------------------------K- 128 (1081)
T ss_pred --------eee-eccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH--------------------------h-
Confidence 222 35999999999999 44788888764 4677876543311 0
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004679 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
......+.+++|..+ |++++.|-.||+|.+-+......+ .+. ..|....+|.+++|+|..
T Consensus 129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~-~I~------------------Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV-KIE------------------RPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce-EEe------------------CCCCCCCCceEEEecCCC
Confidence 011346789999987 699999999999998855422211 111 122334479999999964
Q ss_pred C
Q 004679 292 E 292 (737)
Q Consensus 292 ~ 292 (737)
.
T Consensus 189 g 189 (1081)
T KOG1538|consen 189 G 189 (1081)
T ss_pred C
Confidence 3
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=2e-13 Score=143.63 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=120.4
Q ss_pred EEEEeCCCcEEEEECCC-Ce--EEEEEcccCccceEEEEEeeCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 65 lasgs~dg~V~vwd~~~-~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
+++...++.|.+||+.+ ++ .+..+ . +......++++|+ +++|+++ ..++.|.+|++.. .+.. ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-D-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-e-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence 34457789999999964 33 44444 2 3456788999999 6777655 4588999999972 2211 111
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (737)
... ........++|+|++ +++++++ .++.|.+|++.+...... . +... .+.....
T Consensus 74 ~~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~-----------~~~~-~~~~~~~ 129 (330)
T PRK11028 74 AES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------P-----------IQII-EGLEGCH 129 (330)
T ss_pred eee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------c-----------eeec-cCCCccc
Confidence 111 123346789999955 5555554 589999999974321100 0 0000 0112356
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
+++++|++..++++...++.|.+||+.....+..... ... .. ..+.....++|+|+|++++++..
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--------~~~---~~----~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--------AEV---TT----VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC--------Cce---ec----CCCCCCceEEECCCCCEEEEEec
Confidence 7889997544445666779999999976332211000 000 00 00112567899999999999887
Q ss_pred -CCeEEEEEcCC
Q 004679 300 -GEHVYLMDVNH 310 (737)
Q Consensus 300 -dg~v~iwd~~~ 310 (737)
++.|.+|++..
T Consensus 195 ~~~~v~v~~~~~ 206 (330)
T PRK11028 195 LNSSVDVWQLKD 206 (330)
T ss_pred CCCEEEEEEEeC
Confidence 89999999975
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2e-14 Score=156.23 Aligned_cols=222 Identities=16% Similarity=0.264 Sum_probs=146.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
+..++-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ....|+.+.+-...+..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445677889998888999987789999999999988877322 2467899998876557799999999999999865
Q ss_pred CCC-CCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004679 126 RFS-GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 126 ~~~-~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
... ....-...+..+..+. +-.+.-.-+.|....+.++ +++.-+.|++||....... .++..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~--------------~diP~- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVV--------------ADIPY- 1205 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeE--------------eeccc-
Confidence 322 1110000011111111 1111114467777665555 5555789999998876532 22111
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004679 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
+....++++.-+-..++.+++|..||.|++||.|...+-.. +.. ...+.... +|.
T Consensus 1206 ---------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----------v~~-----~R~h~~~~-~Iv 1260 (1387)
T KOG1517|consen 1206 ---------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL----------VCV-----YREHNDVE-PIV 1260 (1387)
T ss_pred ---------CCCccceeecccccCCceEEEeecCCceEEeecccCCcccc----------cee-----ecccCCcc-cce
Confidence 12345666666655678999999999999999997543211 111 11111111 388
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEEcCC
Q 004679 284 HVTFSPNGEE-VLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 284 ~v~~sp~g~~-l~~g~~dg~v~iwd~~~ 310 (737)
.+.+.+.|-. |++|+.+|.|++||++.
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEeccc
Confidence 9999987655 99999999999999998
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=149.82 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=160.1
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEEc---------
Q 004679 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIE--------- 89 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--------~~~~~~--------- 89 (737)
..++-+|| ...+.++.+|+||++.|+|++|+.||+++|+|+.|+.|.+|+-.-.. .++.+.
T Consensus 32 g~rlliyD--~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 32 GSRLLVYD--TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred CCEEEEEe--CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 35667777 67788999999999999999999999999999999999999854211 111110
Q ss_pred -------------------ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004679 90 -------------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (737)
Q Consensus 90 -------------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 150 (737)
......|.+++|..+ |++|+-|-.||+|.|-+-..... -.+..-.+..++|
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk~gEek--------~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNKNGEEK--------VKIERPGGSNSPI 179 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecCCCCcc--------eEEeCCCCCCCCc
Confidence 012345666777777 79999999999998875432111 0122233567899
Q ss_pred eEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 151 KKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 151 ~~l~~~p~~~----~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
.+++|+|..+ .++++.....++.++.+..... .....-.....|+++.++
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I--------------------------gk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI--------------------------GKDRALNFDPCCISYFTN 233 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecceee--------------------------cccccCCCCchhheeccC
Confidence 9999998543 4677777778888887765431 111112234568888896
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004679 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (737)
Q Consensus 227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iw 306 (737)
|.+++.|+.|+.+++|-.. +-.+.+ -+....+|+.++..|++++++.|+.||+|-.|
T Consensus 234 -GEy~LiGGsdk~L~~fTR~-GvrLGT---------------------vg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 234 -GEYILLGGSDKQLSLFTRD-GVRLGT---------------------VGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred -CcEEEEccCCCceEEEeec-CeEEee---------------------ccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 6899999999999999544 221111 22334489999999999999999999999999
Q ss_pred EcCCC
Q 004679 307 DVNHA 311 (737)
Q Consensus 307 d~~~~ 311 (737)
++-..
T Consensus 291 Nl~fS 295 (1081)
T KOG1538|consen 291 NLIFS 295 (1081)
T ss_pred hhHHh
Confidence 98764
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.63 E-value=1.3e-14 Score=142.40 Aligned_cols=258 Identities=18% Similarity=0.259 Sum_probs=173.5
Q ss_pred cCCCCCcccccccccccccc-------cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--------C---
Q 004679 20 TDTRPDVNHSLQMHSSLVRR-------LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S--- 81 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--------~--- 81 (737)
...+.+.++.+++|...... .+..-.|..|+.+|+++.|+|+|++||+|+.+|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 56788899999999843322 23345678899999999999999999999999999999765 2
Q ss_pred -----CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004679 82 -----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (737)
Q Consensus 82 -----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 156 (737)
....+.+ .+|...|..++|+|+ +.++++++.|..+++||+..+. ....+..|...+..++|.
T Consensus 108 ~~ke~w~v~k~l-r~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~----------l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 108 LNKEKWVVKKVL-RGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ----------LLAILDDHEHYVQGVAWD 174 (434)
T ss_pred hCccceEEEEEe-cccccchhhhhccCC--CceeeeeeccceEEEEEeccce----------eEeeccccccccceeecc
Confidence 1223334 789999999999999 6999999999999999999743 267788999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC--------CCC------------------------CccceEE-------
Q 004679 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSH------------------------QECRNIL------- 197 (737)
Q Consensus 157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~--------~~~------------------------~~~~~~~------- 197 (737)
| -.+++++-+.|...+.+.+.....+.... ..+ .++...+
T Consensus 175 p-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 175 P-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred h-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 9 55788888888866666654433220000 000 0000000
Q ss_pred ----------EeccC-CceeeccCCCCCccceEEEEEecC-----------------CCcEEEEEeCCCcEEEEECCCCC
Q 004679 198 ----------LDLRC-GAKRSLADPPKQTLSLKSCDISST-----------------RPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 198 ----------~~~~~-~~~~~~~~~~~~~~~v~~i~~sp~-----------------~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+.+.. .-.+.+...+........+.|+|- -...+|+++ ...+.+||.++..
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~ 332 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE 332 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc
Confidence 00000 000111122222333344444331 112345554 4678999998876
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
++.... +-|-. .|+.++|+++|..|+..+.||...+..+...+
T Consensus 333 P~~~v~-------------------nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 333 PLAVVD-------------------NIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEe-------------------eeeee-eecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 654432 11222 59999999999999999999988887777643
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=4.1e-15 Score=139.50 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=145.2
Q ss_pred cCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 49 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 49 H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
|+...++-+|+| +|+.+++.+ |+++..||+++.++...+..+|...|..+.|+|+. ..+|++|+.||.|+|||.+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccC
Confidence 566788889998 788888765 68999999999998888888999999999999996 66899999999999999996
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC---
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG--- 203 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~--- 203 (737)
.. .|+..+.+|...|.++.|+|...+++++++.|..|.+|....-.....+...+......-.+....
T Consensus 247 tk---------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 247 TK---------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred CC---------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 43 468899999999999999999889999999999999998765442222221111110000000000
Q ss_pred -ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 204 -AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 204 -~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
....+.++..|+..|++++|+.-++-.||+-+.||++.|=.+.
T Consensus 318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0123456678999999999999889899999999999876554
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=3.7e-15 Score=145.50 Aligned_cols=179 Identities=20% Similarity=0.233 Sum_probs=143.9
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|+++|..++|+|.. ...+++|+.|.+|.||.+...... ..-.+|+..+.+|...|.-++|+|.-.+.|++++.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l~---~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGLT---RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCcccc---cCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 6899999999999986 789999999999999999753221 122367889999999999999999888999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
.+|.+||+.+++.. + .. .|...|++++|+.+ +.+|++.+.|..|||||.++++
T Consensus 154 n~v~iWnv~tgeal------------------------i-~l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL------------------------I-TL-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee------------------------e-ec-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence 99999999998732 1 11 27889999999997 6899999999999999999988
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceeeee
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~ 319 (737)
.+.+- .+|.+..-..+.|-.+|..+-+|.. +..+-+||..+...+..+..
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e 259 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE 259 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence 66543 2344445667789999995555544 67899999988776544443
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=7.2e-14 Score=133.33 Aligned_cols=227 Identities=15% Similarity=0.194 Sum_probs=170.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
-.++|+|.+|++|+..+|.+.....|.||.....+ ..+++ ..|...|++|.|+|. .+.|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence 45799999999999999999999999999987654 56677 789999999999999 5899999999999999885
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
.. .++++...+..+...++++.|+| ..+.|++|+.-+.|.+|-++.... -|.
T Consensus 86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV------ 137 (361)
T KOG1523|consen 86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV------ 137 (361)
T ss_pred CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh------
Confidence 31 22567778888999999999999 779999999999999998775431 000
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc-cCCCCcccceeE
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH 284 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 284 (737)
.....+.....|++++|+|+ +-++++|+.|+.+|+|..- ++.+..+..+..--..+.-..+ .+....++++..
T Consensus 138 -sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~ 211 (361)
T KOG1523|consen 138 -SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG 211 (361)
T ss_pred -hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence 00111234567899999997 5799999999999999753 1111111111111111111111 112245568999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+.|+|+|..|+-.+.|..|.+-|...+.
T Consensus 212 v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999999999988765
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=4.3e-14 Score=152.06 Aligned_cols=237 Identities=17% Similarity=0.156 Sum_probs=171.4
Q ss_pred ccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEe
Q 004679 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFV 102 (737)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~s 102 (737)
.+-+|+..-. ..+...+. -...|+|++|+| +..+||.|..+|+|.+||+..+.. +......|..+|+.+.|.
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred eEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4666763322 56666665 356899999999 678999999999999999987654 222225689999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCC----C-----------------------------------------C---
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGL----D-----------------------------------------D--- 134 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----~-----------------------------------------~--- 134 (737)
.+..+.-|++++.||.|+.|+++....... + .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 875344599999999999999875222100 0 0
Q ss_pred -----CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004679 135 -----NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 135 -----~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
..+++...+..|.++|+++.++|-...++.+++ |.++++|.......+ +.
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P------------------------l~ 435 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP------------------------LL 435 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc------------------------ch
Confidence 001223345567889999999998777777777 999999997733211 23
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
....+...+++++|||..+..|+++..||.|.+||+........... .. + ....+.+.|++
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~---------~~---------~-~~~l~~~~~s~ 496 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ---------KV---------C-SPALTRVRWSP 496 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc---------cc---------c-ccccceeecCC
Confidence 33344566999999999999999999999999999985542211110 00 1 22467788999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 004679 290 NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+|+.|++|...|.+.+|++...
T Consensus 497 ~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCcEEEEecCCCcEEEEEcCch
Confidence 9999999999999999999763
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=160.70 Aligned_cols=159 Identities=20% Similarity=0.326 Sum_probs=119.5
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.+|-..|.|+.|... |.++++|+.|..++||.+.+. .++....+|.+.|+.++.+. +..++++++.|
T Consensus 187 lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D 253 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMIAAASND 253 (1113)
T ss_pred Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhhhhcccC
Confidence 589999999999988 899999999999999997752 33788999999999999987 55789999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
..|++|.+..+.++ .-..+|++.|++++|+|-. +.+.||++++||.+- .
T Consensus 254 ~vIrvWrl~~~~pv-------------------------svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~ 302 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPV-------------------------SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-E 302 (1113)
T ss_pred ceEEEEecCCCchH-------------------------HHHhccccceeeeccCccc-----cCCCCCceEeccccc-c
Confidence 99999999998743 3345789999999999952 678899999999982 2
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
++... |-.+...+. .-+-++.|..++..+++++.|+....|.+
T Consensus 303 ~~~y~--------------prp~~~~~~--~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 303 PRIYV--------------PRPLKFTEK--DLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred ccccC--------------CCCCCcccc--cceeeeeccccccccccccCCcccccchh
Confidence 11111 111111111 13556667667777777777665555543
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=9.2e-15 Score=147.77 Aligned_cols=195 Identities=17% Similarity=0.314 Sum_probs=147.2
Q ss_pred cccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004679 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
+.+..+..+.+.+|.++|.|-.|+|||.-|+|++.||.|++|.- +|....++ .....+|.|++|.|++ .+.+.+.+
T Consensus 90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g- 165 (737)
T KOG1524|consen 90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG- 165 (737)
T ss_pred ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC-
Confidence 34556777888999999999999999999999999999999994 44444444 3467899999999996 44554443
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
+.+.|=-+... ..+-..+.|.+-|.++.|++ ..+++++|+.|-..++||-....
T Consensus 166 -~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~-------------- 219 (737)
T KOG1524|consen 166 -GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN-------------- 219 (737)
T ss_pred -CeEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc--------------
Confidence 34555444431 12456788999999999999 55899999999999999965432
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
+.....|+.+|++++|+|+ ..++.++. .++|+=..+.
T Consensus 220 ------------Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~---------------------------- 256 (737)
T KOG1524|consen 220 ------------LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV---------------------------- 256 (737)
T ss_pred ------------cccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc----------------------------
Confidence 3344567889999999996 57777775 4455222221
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd 307 (737)
+.|..++||+||..++.|+..|.|.+=-
T Consensus 257 ----GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 257 ----GSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ----cceEEEEEcCCCceeeccccCceEEEee
Confidence 2499999999999999999988776543
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=7.6e-14 Score=133.28 Aligned_cols=209 Identities=11% Similarity=0.087 Sum_probs=135.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004679 56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 56 l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 135 (737)
.+|||+|+++|+++.- .+.|-|.++-+..+.| .--..|..+.|..++ ..+|.....|+.|.+|++.+.+-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew------ 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW------ 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee------
Confidence 5799999999999875 8888898887765554 234678889999885 55667778899999999986432
Q ss_pred CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC--------CCCCCCccceEEEeccCCc---
Q 004679 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------AGSSHQECRNILLDLRCGA--- 204 (737)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--- 204 (737)
...+......+.++.|+|++.++|.+...|-+|.+|.+.+.+.... ...-+.+....-+-.+..-
T Consensus 84 ----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 84 ----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred ----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence 3456667788999999998878999999999999999988753210 0011111111110000000
Q ss_pred --------eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 205 --------KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 205 --------~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
-..+..+...+...+++.|+|+ ++.|| +||---.-.+. .-
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~la---------Vwd~~Leykv~----------------------aY 207 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWLA---------VWDNVLEYKVY----------------------AY 207 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCC-CcEEE---------Eecchhhheee----------------------ee
Confidence 0001122233445566777775 34444 34322110000 00
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+.+..+..++|+|.+++|++|+.|+++++.|--+
T Consensus 208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred eeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 2222488999999999999999999999976554
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=4.6e-14 Score=145.24 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=154.3
Q ss_pred EcCCCCEEEE--EeCCCcEEEEECCCC-e----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 58 WNSKGSLLIS--GSDDTHINVWSYSSR-K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 58 ~s~~g~~las--gs~dg~V~vwd~~~~-~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
|+.+.+++|. .+.-|.|-||++..- + .+..+ .....|+++.|.|-. ...|+.++.||.|+||.+..+...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD-~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFD-DERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCC-hHHeeecccCceEEEEEeccCCCC
Confidence 4445556553 455689999999752 2 22233 246789999999975 789999999999999999864332
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
.+...+...+..|...|+++.|+|-..++|+++++|-+|++||+++.+. ...
T Consensus 664 ---e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-------------------------~~~ 715 (1012)
T KOG1445|consen 664 ---ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-------------------------YSR 715 (1012)
T ss_pred ---cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-------------------------hhe
Confidence 2345667888999999999999998888999999999999999998762 334
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004679 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
+.+|...|.+++|+|+ ++.+|+.+.||+|++|..++... +.+ +.+..+..-..+.|--
T Consensus 716 l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~E--------------------g~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYE--------------------GKGPVGTRGARILWAC 774 (1012)
T ss_pred eccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCcccc--------------------CCCCccCcceeEEEEe
Confidence 5578999999999997 69999999999999999987641 111 0111112234577888
Q ss_pred CCCEEEEEeCCC----eEEEEEcCCCC
Q 004679 290 NGEEVLLSYSGE----HVYLMDVNHAG 312 (737)
Q Consensus 290 ~g~~l~~g~~dg----~v~iwd~~~~~ 312 (737)
+|+++++.+.|. .|.+||.++..
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhcc
Confidence 999999888864 67888877743
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.2e-13 Score=125.43 Aligned_cols=248 Identities=14% Similarity=0.138 Sum_probs=170.1
Q ss_pred hhhccccCCCCCcccccccccccccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--Ec-
Q 004679 14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS--IE- 89 (737)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~--~~- 89 (737)
.-+..+..-+...-+-+.+|.. ++......++ .|...|+.+.--|+ ..|.+=+.|+.+.+|++..+..+.. +.
T Consensus 21 ~fqa~~rL~sg~~~G~V~~w~l--qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~ 97 (323)
T KOG0322|consen 21 LFQANERLMSGLSVGIVKMWVL--QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVV 97 (323)
T ss_pred hhccchhhhcccccceEEEEEe--ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeec
Confidence 3344455556677788999994 4445556666 47789999998887 5688888999999999875322111 00
Q ss_pred -------------------------------------------------ccCccceEEEEEeeCCCCC-EEEEEECCCcE
Q 004679 90 -------------------------------------------------TGHSANVFCTKFVPETSDE-LVVSGAGDAEV 119 (737)
Q Consensus 90 -------------------------------------------------~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I 119 (737)
.+..+.+.|..|....... +++.|-.+|.+
T Consensus 98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv 177 (323)
T KOG0322|consen 98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV 177 (323)
T ss_pred cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence 1223445565544432122 45777789999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+||+...+....-....+.......|..+|.++.+.+.- ..=++|+.+..+..|.+......-.+ .....
T Consensus 178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~--------~~e~~ 248 (323)
T KOG0322|consen 178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQI--------RKEIT 248 (323)
T ss_pred EEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccc--------cceEE
Confidence 9999997533222122223344556799999999998743 44557888889999998765311000 00000
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
...-.+..+.+-|+ ++.+||++.|++||||..++++++..+. -|..
T Consensus 249 -------------lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLk--------------------yHsa 294 (323)
T KOG0322|consen 249 -------------LKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLK--------------------YHSA 294 (323)
T ss_pred -------------ecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhh--------------------hhhc
Confidence 11234667778887 5899999999999999999999876653 2443
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
.|++++|+|+...+++++.|+.|.+|++
T Consensus 295 -gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6999999999999999999999999986
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7e-13 Score=144.41 Aligned_cols=264 Identities=14% Similarity=0.225 Sum_probs=181.4
Q ss_pred CCCCCChhhhhhhccccCC----CCCcccccccccccccc---cccceeec---ccC----CceEEEEEcCCCCEEEEEe
Q 004679 4 FPFHDGSIYDMLDTRHTDT----RPDVNHSLQMHSSLVRR---LSQERELE---GHQ----GCVNAISWNSKGSLLISGS 69 (737)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~l~---~H~----~~V~~l~~s~~g~~lasgs 69 (737)
..|-...+.++-..++.+. ..+.++.|++|+.+... .+.+..+. ++. +.=.-+.|..+..+|++++
T Consensus 1105 ~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1105 GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC
Confidence 3344555556555555543 47889999999977664 33333333 221 1112356776544555555
Q ss_pred CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 70 ~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
.-..|+|||..+.++...+..+....|+++.-+-.. |++++.|..||.|++||.+..... ..+...+.|+..
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHNDV 1256 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccCCc
Confidence 568999999999988888866667778888766665 799999999999999999865432 236677788887
Q ss_pred --eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004679 150 --VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 150 --v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
|..+.+.+.+-..|++|+.||.|++||++...... +. .+.........++++..++.
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~--------~iv~~~~yGs~lTal~VH~h- 1315 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FL--------TIVAHWEYGSALTALTVHEH- 1315 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cc--------eeeeccccCccceeeeeccC-
Confidence 99999988555568999999999999999852110 00 00000011124889999987
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004679 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 228 ~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd 307 (737)
...+|+|+. +.|+||++...+ +..+.. .+.. -+...+.+.|++|||.--.+++|+.|..|.||.
T Consensus 1316 apiiAsGs~-q~ikIy~~~G~~-l~~~k~-----------n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLSGEQ-LNIIKY-----------NPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CCeeeecCc-ceEEEEecChhh-hccccc-----------Cccc---ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 579999988 999999997433 322210 0111 122333589999999999999999999999998
Q ss_pred cCCCC
Q 004679 308 VNHAG 312 (737)
Q Consensus 308 ~~~~~ 312 (737)
.....
T Consensus 1380 ~~k~~ 1384 (1387)
T KOG1517|consen 1380 CEKPR 1384 (1387)
T ss_pred cCCcC
Confidence 77643
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=9.5e-13 Score=142.90 Aligned_cols=239 Identities=11% Similarity=0.070 Sum_probs=153.3
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004679 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
+..|.+++... ...+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++..... ........++|+|
T Consensus 183 ~~~i~i~d~dg---~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDG---FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCC---CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECC
Confidence 35566666322 2245677788899999999999999887654 46999999887542211 1222344689999
Q ss_pred CCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 104 ETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 104 ~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
+ |+.|+.+ +.+|.+.||.+....+. ...+..+...+....|+|++..+++++..++...+|++.....
T Consensus 258 D--G~~La~~~~~~g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 258 D--GSRLAFASSKDGVLNIYVMGANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred C--CCEEEEEEecCCcEEEEEEECCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9 6777665 46887776654321111 3344556667888999996544555556778899998764321
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
. ...+ . +.. ....|+|+ ++.|+..+.++ +.+||+.+++.....
T Consensus 327 ~---------------------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt-------- 369 (429)
T PRK01742 327 G---------------------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS-------- 369 (429)
T ss_pred C---------------------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec--------
Confidence 1 0011 0 111 34679997 57777777655 556999876422110
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCcceeeeecCCCCeeeeeccCC
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
... ....+.|+|+|++|+.++.++.+.+|.+. ++.....+..+...+...+|+|..
T Consensus 370 ------------~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 370 ------------STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred ------------CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 000 12357899999999999999988888763 345445555555667778888854
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3e-13 Score=134.13 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004679 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 54 ~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 133 (737)
.+++|+++|..|++|+.||++|||++.....+... ..|...|.++.|+|+ +.+|++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 68999999999999999999999999888877777 789999999999999 7999999999 999999997532
Q ss_pred CCCCCCceee--ccCCCceeEEEEecCC---C-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 134 ~~~~~~~~~~--~~h~~~v~~l~~~p~~---~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
+... ..-......+.|+.++ . .+++....-+.|..||+.....- ....
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence 1111 1122234556776533 1 22333344567777776654310 0000
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
..........|.+++.+++ +++++.|+.||.|-|++..+.+.+.-+. +.|.. -|+.+.|
T Consensus 274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~vk-------------------~aH~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYVK-------------------EAHLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEeeh-------------------hhhee-eeeeEEE
Confidence 1111122347899999997 6999999999999999998876443322 33444 5999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCC
Q 004679 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|+.++++..+.+....+..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999998888887765
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.5e-12 Score=118.09 Aligned_cols=233 Identities=14% Similarity=0.182 Sum_probs=155.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------Ce-EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~---------~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
..|.+-+|+|.+++|+.|..+|.|.+..+.. ++ .+..+ ++|+.+|..++|.. .+|++|+ ||.|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEE
Confidence 3566778999999999999999999998863 22 33344 79999999999984 4777776 59999
Q ss_pred EEecCCCCCCCCCCC---CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 121 LFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 121 iwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
-|..+.......... ...|.+.-...-..|+++...|..+.+| .++.|+.++.||+++++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i--------------- 148 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI--------------- 148 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE---------------
Confidence 999876433110000 0011111111234688999999655555 555899999999999862
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
...+.+|+..+.++.--.. ...+++|+.||++|+||+++.+.+..+..--.+ .+. +.+
T Consensus 149 ----------~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-~~l----------Rp~ 206 (325)
T KOG0649|consen 149 ----------QREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-NLL----------RPD 206 (325)
T ss_pred ----------EEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccCh-hhc----------Ccc
Confidence 3345678888988887443 358999999999999999999876665321110 111 223
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004679 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
-+.+|.+++.+. .+++.|+ ...+.+|+++..+.. ..+.....+..+.|-.
T Consensus 207 ~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t-~vfpipa~v~~v~F~~ 256 (325)
T KOG0649|consen 207 WGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSEST-CVFPIPARVHLVDFVD 256 (325)
T ss_pred cCceeEEEeccC--ceEEecC-CCceeEEeccCCCce-EEEecccceeEeeeec
Confidence 444687777654 4665554 458999999996543 3334444444555544
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=7.7e-12 Score=138.67 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=132.5
Q ss_pred EECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004679 77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (737)
Q Consensus 77 wd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 156 (737)
|+. +|..+..+ ..|...+..++.++.. +.+|++|+.||+|++|+++...+.. .......++..-...+.++.+.
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 554 46677777 7899999999999875 6999999999999999998654431 1122233344456788899998
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc-EEEEEe
Q 004679 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG 235 (737)
Q Consensus 157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~t~s 235 (737)
+ +++.+|.++.||.|.+.++....... ..+. ...+.........+..-+|...... .++.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~----------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVAT----------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccccccc------ceee----------eeecccccCCCceEEeecccccccceeEEEEE
Confidence 8 67899999999999999988742110 0000 0011111111112333344333334 788888
Q ss_pred CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.-+.|..||+++.......... ...+.|++++.+|.+.++++|+..|.+.+||++=
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~-------------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-------------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred eccceEEecchhhhhHHhhhcC-------------------ccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 8999999999987755544321 1122599999999999999999999999999986
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.1e-12 Score=140.20 Aligned_cols=176 Identities=13% Similarity=0.172 Sum_probs=109.3
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004679 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (737)
+..|.+||.+... ...+ ..|...+.+.+|+|+ |+.|+.++.+ ..|++||+..+... .+..+.+|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~--------~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARK--------VVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceE--------EEecCCCc-
Confidence 4689999987655 3445 567888999999999 7888877654 46999999754321 12223333
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004679 148 RRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (737)
Q Consensus 148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 225 (737)
...++|+|++..++++.+.+|.+.+| |+.++.. ..+ ..+...+....|+|
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-----------------------~~l---t~~~~~~~~~~wSp 301 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-----------------------SQL---TSGAGNNTEPSWSP 301 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-----------------------Eee---ccCCCCcCCEEECC
Confidence 34689999553444445578876666 4444321 111 11233467789999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004679 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (737)
Q Consensus 226 ~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i 305 (737)
++..+++++..++...||++......... + ++.. ....|+|+|++|+.++.++ +.+
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~-----------------l---~~~~---~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASL-----------------V---GGRG---YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEE-----------------e---cCCC---CCccCCCCCCEEEEEcCCC-EEE
Confidence 85334445556788889887542211000 0 0111 2467999999998887764 555
Q ss_pred EEcCCC
Q 004679 306 MDVNHA 311 (737)
Q Consensus 306 wd~~~~ 311 (737)
||+.++
T Consensus 358 ~Dl~~g 363 (429)
T PRK01742 358 QDLTSG 363 (429)
T ss_pred EECCCC
Confidence 887764
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=9.7e-12 Score=126.58 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=149.7
Q ss_pred cCCCCCcccccccccccccccccceeec-ccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC----------eEEE
Q 004679 20 TDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR----------KLLH 86 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~----------~~~~ 86 (737)
+..+++.+..+.+|+.. ..|+++.+. ||...|.|++|-| +.+++++|..|..|+++|+... +...
T Consensus 64 lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~ 141 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR 141 (758)
T ss_pred EEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence 45678899999999966 455666554 8999999999999 4578999999999999999841 2223
Q ss_pred EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE
Q 004679 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (737)
Q Consensus 87 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 166 (737)
.+ ..|...|.-++-.|+. ...|-+++.||+|+-+|++.+..-..+......+..+...--...|+.++|..+.+|+.|
T Consensus 142 ~~-~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 142 CW-SCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hh-hhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence 33 6789999999999985 689999999999999999974322111111111222222334567999999999999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCC-----CCCCc--cceEEEeccCCceeeccC-CCCCccceEEEEEecCCCcEEEEEeCCC
Q 004679 167 SEDGTLRQHDFRQGSSCPPAG-----SSHQE--CRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+.|-..++||.+...+....- ....+ |...+. .++...... .......++-+.|+|++ .-|++.-...
T Consensus 220 gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnpNG-tElLvs~~gE 295 (758)
T KOG1310|consen 220 GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNPNG-TELLVSWGGE 295 (758)
T ss_pred CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECCCC-cEEEEeeCCe
Confidence 999999999976544331111 01111 111111 011100000 01112235678899974 5666666667
Q ss_pred cEEEEECCCCCCcc
Q 004679 239 FARLYDRRMLPPLT 252 (737)
Q Consensus 239 ~i~iwd~~~~~~~~ 252 (737)
.|++||+...+...
T Consensus 296 hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 296 HVYLFDVNEDKSPT 309 (758)
T ss_pred EEEEEeecCCCCce
Confidence 89999999776443
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.4e-12 Score=123.77 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=183.5
Q ss_pred ccCCCCCcccccccccc---ccccc-ccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc
Q 004679 19 HTDTRPDVNHSLQMHSS---LVRRL-SQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS 93 (737)
Q Consensus 19 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~ 93 (737)
.+..+++.+..+.+|.. ..++. |++..... |...|.|++|.....+|++|..+++|.+.|+++.+.+..+ .|.
T Consensus 69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~ 146 (609)
T KOG4227|consen 69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NEN 146 (609)
T ss_pred eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--ccc
Confidence 34667888888888873 23333 55555543 4589999999999999999999999999999999988877 344
Q ss_pred ---cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004679 94 ---ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 94 ---~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
+.|..+..+|. .+.|++.+.++.|.+||.+...... . +............+.|+|..+.+|++.+..+
T Consensus 147 ~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred CcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccC
Confidence 48999999998 6999999999999999999643221 1 2223334556788999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCC-------CCCCccc-------------------eEEEeccCCceeeccCCCC-----CccceE
Q 004679 171 TLRQHDFRQGSSCPPAG-------SSHQECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLK 219 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~-------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-----~~~~v~ 219 (737)
.+.+||.+......... ....+.. .+++++.......+.+... ....+.
T Consensus 218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence 99999998765431100 0000111 1122222211111111111 123456
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc---ccCCCCCCCCcccccc-ccccCCCCcccceeEEEEcCCCCEEE
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS---CQKRMSPPPCVNYFCP-MHLSEHGRSSLHLTHVTFSPNGEEVL 295 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~ 295 (737)
+|+|-.+ ..+++|+.+-.|++|.+.....-.. +....+. .+...+.. ......||.. -++.|.|+|...+|+
T Consensus 298 S~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~-~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 298 SMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE-MPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLV 373 (609)
T ss_pred eeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhh-CchhheecceeEEEecccc-cccceeecCCcceEe
Confidence 7788764 5799999999999999864432222 1111000 00011111 1111245655 488999999999999
Q ss_pred EEeCCCeEEEEEcCC
Q 004679 296 LSYSGEHVYLMDVNH 310 (737)
Q Consensus 296 ~g~~dg~v~iwd~~~ 310 (737)
+.+-.+.+++|.-..
T Consensus 374 SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 374 SSGVENSFKLWSDHR 388 (609)
T ss_pred ccchhhheecccccc
Confidence 988899999998665
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6.7e-12 Score=135.32 Aligned_cols=254 Identities=11% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCCcccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEE
Q 004679 22 TRPDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v 99 (737)
+....+++|.+|+... ..-.....|.=|...|++++|+++|.+|.+|+..|.+.+|.+.+++ ++|++--.++|..+
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHI 298 (792)
T ss_pred EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEE
Confidence 3456779999999766 3334556788899999999999999999999999999999999988 55657788999999
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc-ee-eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS-AL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~~-~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
.++|+ +++.+....|..|.+-.......... ..-+.+. .. -....+-.+.++++| ..+.++-.+..|.|.+||+
T Consensus 299 ~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~t-Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 299 VVSPD--SDLYSLVLEDNQIHLIKASDLEIKST-ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EEcCC--CCeEEEEecCceEEEEeccchhhhhh-ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEec
Confidence 99999 68888888999999988754332211 0000111 00 112344567888988 5577778899999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--------CC--CcEEEEECCC
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SD--AFARLYDRRM 247 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--------~D--g~i~iwd~~~ 247 (737)
.+...+..... .......+. ..+...+++++.+.. +++++|.- .| -.+++|-...
T Consensus 375 ~td~~i~~~~v-------~~~n~~~~~-------~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 375 YTDSTIYKLQV-------CDENYSDGD-------VNIQVGITAVARSRF-GSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred cccceeeeEEE-------EeecccCCc-------ceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88764411100 000001111 023345677777776 67888763 22 3577886654
Q ss_pred CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004679 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~ 311 (737)
...- |.........|...-+..+..+|... .+++++.||.+++|-+...
T Consensus 440 ~~kt---------------~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 440 NSKT---------------FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred Ccce---------------eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 3221 11111111224433344444555444 8999999999999998763
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=6.2e-11 Score=124.48 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=121.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004679 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (737)
Q Consensus 65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 144 (737)
+++-..++.|.|.|..+.+.+..+ ......-..+.|+|+ +.++++++.||.|.++|+.+.+ .+..+.
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i-~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~----------~v~~i~ 75 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARI-PTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK----------VVATIK 75 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEE-E-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS----------EEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEE-cCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc----------EEEEEe
Confidence 345667899999999999999998 333333445779999 7889889999999999999733 245554
Q ss_pred cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004679 145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (737)
Q Consensus 145 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (737)
. .....++++++++..+++++..++.+.++|.++.+.+. .+ ..+.. ........+.++..+
T Consensus 76 ~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~-----------~I---~~~~~----~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 76 V-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK-----------TI---PTGGM----PVDGPESRVAAIVAS 136 (369)
T ss_dssp --SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE-----------EE---E--EE-----TTTS---EEEEEE-
T ss_pred c-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee-----------ec---ccccc----cccccCCCceeEEec
Confidence 3 34568899999554444455678999999998876431 10 00000 000123456677778
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeE
Q 004679 225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHV 303 (737)
Q Consensus 225 p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v 303 (737)
|..+.++++--.-+.|.+.|....+.+..-. . ..+.......|+|+++|++++.. ++.|
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-----------i---------~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-----------I---------KVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-----------E---------E--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceee-----------e---------cccccccccccCcccceeeeccccccee
Confidence 8754455555555888888877654321100 0 01113667899999999877654 7799
Q ss_pred EEEEcCCCCc
Q 004679 304 YLMDVNHAGG 313 (737)
Q Consensus 304 ~iwd~~~~~~ 313 (737)
-++|..+++.
T Consensus 197 ~viD~~~~k~ 206 (369)
T PF02239_consen 197 AVIDTKTGKL 206 (369)
T ss_dssp EEEETTTTEE
T ss_pred EEEeeccceE
Confidence 9999998654
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=4.6e-11 Score=125.68 Aligned_cols=272 Identities=8% Similarity=0.093 Sum_probs=163.3
Q ss_pred CCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC-CCeE--EEEEcccCccceEE
Q 004679 24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYS-SRKL--LHSIETGHSANVFC 98 (737)
Q Consensus 24 ~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~-~~~~--~~~~~~~h~~~V~~ 98 (737)
...++.|.+|+... .+++.+.++. +.+....|+++|++++|+++ ..++.|.+|++. +++. +... ........
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~ 84 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTH 84 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceE
Confidence 34567888888532 2344556665 34567789999999988765 458899999997 3332 2222 12345678
Q ss_pred EEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
++|+|+ +++|++++. ++.|.+|++... +.. ......+. +.....+++++|++..++++...++.|.+||+
T Consensus 85 i~~~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~-----~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 85 ISTDHQ--GRFLFSASYNANCVSVSPLDKD-GIP-----VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred EEECCC--CCEEEEEEcCCCeEEEEEECCC-CCC-----CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 999999 677776654 899999999742 111 01122222 23446778999955445566667799999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-CCcEEEEECCCCC-Cccccc
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQ 255 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-Dg~i~iwd~~~~~-~~~~~~ 255 (737)
.+...+.... . ..+... .......+.|+|+ +++++++.. ++.|.+||+.... .+..+.
T Consensus 156 ~~~g~l~~~~---------------~--~~~~~~--~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 156 SDDGHLVAQE---------------P--AEVTTV--EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCCcccccC---------------C--CceecC--CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 8643210000 0 000000 0123567899997 467666654 8999999997421 111110
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccee---eeecCCCCeeeeecc
Q 004679 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM---RYTVGDASKIMSFTP 331 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~p 331 (737)
. +... +.... +.. ....+.++|+|++++++.. ++.|.+|++........ ....+..++.+.++|
T Consensus 216 ~-------~~~~-p~~~~---~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 216 T-------LDMM-PADFS---DTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH 283 (330)
T ss_pred E-------EecC-CCcCC---CCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC
Confidence 0 0000 00000 011 2446899999999999865 78999999976442222 222344566788888
Q ss_pred CCCCccCC
Q 004679 332 TLNGLELQ 339 (737)
Q Consensus 332 ~~~~~~~~ 339 (737)
+.+.+...
T Consensus 284 dg~~l~va 291 (330)
T PRK11028 284 SGKYLIAA 291 (330)
T ss_pred CCCEEEEE
Confidence 87666553
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.7e-12 Score=114.59 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=144.7
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEE-EcccC-----ccceEEEEEeeCCCCC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHS-IETGH-----SANVFCTKFVPETSDE 108 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~------~~~-~~~~h-----~~~V~~v~~sp~~~~~ 108 (737)
.++.+.++|.++|+.|+|. ..+|++|+. |.|+=|....... +.. ..+-| -..|+++...|.. +
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--n 127 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--N 127 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--C
Confidence 4566779999999999998 456777764 9999998764322 000 00112 2468999999984 4
Q ss_pred EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004679 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (737)
Q Consensus 109 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~ 188 (737)
-++.++.|+.++-||+..+. ....+++|++.|.++.-...+++ +++|+.||++++||.++.+.+..+..
T Consensus 128 Si~~AgGD~~~y~~dlE~G~----------i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGR----------IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred cEEEecCCeEEEEEEecCCE----------EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecc
Confidence 55555589999999999743 26789999999999998654554 55999999999999999885522211
Q ss_pred CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccc
Q 004679 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (737)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (737)
-. ... . ..+.....|.+++.+. .++++|+ ...+.+|.+++......++.+
T Consensus 197 yk-----------~~~---~-lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfpip----------- 246 (325)
T KOG0649|consen 197 YK-----------NPN---L-LRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFPIP----------- 246 (325)
T ss_pred cc-----------Chh---h-cCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEecc-----------
Confidence 10 000 0 0111234566666653 5777775 467999999988766555321
Q ss_pred cccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 269 ~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.++..+.|.. ..+++++..+.|.-|.+.-
T Consensus 247 -----------a~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 -----------ARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -----------cceeEeeeec--ceEEEeccccceeeeeecc
Confidence 1466778854 4688888888999997764
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=2.2e-10 Score=111.97 Aligned_cols=217 Identities=19% Similarity=0.283 Sum_probs=147.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCCCCCEEEEEE--CCCcEEEEecCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSR 126 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~ 126 (737)
.+|.++.++. ++|+.+=.+ .|.|||+.+.+.++++... +...+.++++++. +.+++.-+ ..|.|.|||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEEEEccc
Confidence 4688888764 567766654 5999999999999988543 3344555444444 45666532 359999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
.++...+..|.+.+.+++|++ ++.+|||+|..|+ |+++.+..++ .++.++.|..
T Consensus 163 ----------l~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~ 217 (391)
T KOG2110|consen 163 ----------LQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTY 217 (391)
T ss_pred ----------ceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCce
Confidence 345778889999999999999 7799999999987 6899998876 3455554432
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC---------------CC-------CC
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PP-------PC 263 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~---------------~~-------~~ 263 (737)
...|.+++|+|+ .++|++.+..++|++|.+.....- ....+.. .| ..
T Consensus 218 ---------~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~~-~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 218 ---------PVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSNN-PPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred ---------eeEEEEEEECCC-CCeEEEecCCCeEEEEEecccccC-CCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 357899999998 579999999999999998754311 0000000 00 01
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+.|....+...+.. .+..+.-.+...++.+++.||.++.|.+.-
T Consensus 287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 112222222222221 233333335788999999999999999876
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.40 E-value=2.8e-12 Score=130.08 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=149.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
..++.++.||.+.|.+ ..++....+ ..|.+.+.|-.|+|+ |.-|++++.||.|++|.-.-. ...+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM-----------LRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM-----------LRST 140 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch-----------HHHH
Confidence 5788899999999988 445555666 789999999999999 799999999999999975521 1233
Q ss_pred eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004679 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (737)
Q Consensus 143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (737)
+.....+|.|++|.|+..+.+++.+. .+.+=-+..... +..-+.|.+-|.++.
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k-------------------------~i~WkAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK-------------------------IIRWRAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc-------------------------eeEEeccCcEEEEee
Confidence 44567789999999977777776654 444433333221 111235778899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe
Q 004679 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (737)
Q Consensus 223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~ 302 (737)
|++. .+++++|+.|-..++||.......... .+.++|++++|.|+ ..++.++.. +
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~S~----------------------~~ey~ITSva~npd-~~~~v~S~n-t 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFTSA----------------------AEEYAITSVAFNPE-KDYLLWSYN-T 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCcccccCC----------------------hhccceeeeeeccc-cceeeeeee-e
Confidence 9998 589999999999999998754332221 23347999999999 556666554 5
Q ss_pred EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004679 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 347 (737)
Q Consensus 303 v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 347 (737)
+++=..+ ...+-.++|+|++..++.....+..+.
T Consensus 249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeecCCC-----------ccceEEEEEcCCCceeeccccCceEEE
Confidence 5522222 345667899999998888777655543
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=6.1e-11 Score=115.79 Aligned_cols=195 Identities=12% Similarity=0.161 Sum_probs=143.6
Q ss_pred ceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 52 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
.|--+-|+. .++|..+.+ ..+++.++.++..++.+. ...+|.+|.++.+ .|+.+-.+. |+|||++...
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~Mk- 117 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMK- 117 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEccc-EEEEecccce-
Confidence 455566654 455554443 459999999998888873 6788999999875 566665544 9999999732
Q ss_pred CCCCCCCCCCceeec---cCCCceeEEEEecCCCcEEEE-Ee-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 130 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s-~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
.+.++. .+...+.++++++.+ .+++- ++ ..|.|.+||+.+-++
T Consensus 118 ---------lLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~---------------------- 165 (391)
T KOG2110|consen 118 ---------LLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQP---------------------- 165 (391)
T ss_pred ---------eehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEccccee----------------------
Confidence 244333 355556666666633 45543 22 358899999887653
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
+.....|.+.+.+++|+++ |.+|||++..|+ ||||.+.+++.+.++... .....|.
T Consensus 166 ---v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~Iy 222 (391)
T KOG2110|consen 166 ---VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIY 222 (391)
T ss_pred ---eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEE
Confidence 2233468899999999997 699999999985 789999999887776432 2222599
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+++|+|++.+|.+.+..++|++|.+.+.
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999999999874
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.3e-11 Score=116.48 Aligned_cols=159 Identities=9% Similarity=0.074 Sum_probs=103.6
Q ss_pred hhhhhccccCCCCCccccccccccc----ccccccceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEE
Q 004679 12 YDMLDTRHTDTRPDVNHSLQMHSSL----VRRLSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL 85 (737)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~~~~ 85 (737)
+.-|+.-+++...+..+.+.+.... ..........-.-...|..++|.-++ +.|..++.|..+..+.+....+.
T Consensus 13 ~~a~~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~ 92 (412)
T KOG3881|consen 13 QSALMPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS 92 (412)
T ss_pred HhhccceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccc
Confidence 3456666777777777666655432 22222333233445678899998655 45666657777888887766544
Q ss_pred EEE-----cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004679 86 HSI-----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (737)
Q Consensus 86 ~~~-----~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 160 (737)
... ......+|..++... ..|++|-.+|.+.+|....+.... .++..+..+ ..+..+.-++..+
T Consensus 93 s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~~~~k~~d~hs------s~l~~la~g-~g~~~~r~~~~~p 161 (412)
T KOG3881|consen 93 SSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQVRHDKSGDLHS------SKLIKLATG-PGLYDVRQTDTDP 161 (412)
T ss_pred cccccccccccccccccchhhcC----CEEEEEecCCcEEEEeccCCcccc------ccceeeecC-CceeeeccCCCCC
Confidence 332 134567777777664 478899999999999998654221 223334333 5567777777777
Q ss_pred cEEEEEeCC--CcEEEEEcCCCC
Q 004679 161 HVVWSASED--GTLRQHDFRQGS 181 (737)
Q Consensus 161 ~~l~s~s~D--g~I~vwdl~~~~ 181 (737)
.++++|+.. .-+++||+...+
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred ceEecCchhcccceeeeecccce
Confidence 888888888 788889888764
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=3.2e-11 Score=122.88 Aligned_cols=249 Identities=17% Similarity=0.150 Sum_probs=153.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-Ec--ccCccceEEEEEeeC--C-CCCEEEEEECCCcEEEEecCCC
Q 004679 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IE--TGHSANVFCTKFVPE--T-SDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 54 ~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~-~~--~~h~~~V~~v~~sp~--~-~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
....++-.|.+|+-.- ...+.+|+...+..+.. +. .-.....+|-+|+.. . .+--|+.|-.-|.|.+.|....
T Consensus 127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3444444566554332 23688898874322111 10 011223344445321 1 0345777888899999887641
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC-CCCCCCC--CccceEEEeccCCc
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-PPAGSSH--QECRNILLDLRCGA 204 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~-~~~~~~~--~~~~~~~~~~~~~~ 204 (737)
.-... .-....-.+..|+|+.|-|.+...++.+-.+|.+.++|..-.-.. ....... .+...+......-.
T Consensus 206 ~~skl------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~ 279 (636)
T KOG2394|consen 206 EVSKL------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKT 279 (636)
T ss_pred HHHHh------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecccc
Confidence 11000 000111234789999999988888889999999999987322111 0000011 11111111100000
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
...+.........|+..+|+|+ +++||+.+.||.+||||..+.+.+..+.. -.+ ...|
T Consensus 280 rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkS--------------------YFG-GLLC 337 (636)
T KOG2394|consen 280 RNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVMKS--------------------YFG-GLLC 337 (636)
T ss_pred CCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHHHh--------------------hcc-ceEE
Confidence 0112222223458899999996 79999999999999999988665433210 111 4899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
|+|||||+||++|+.|..|.||.+...+.+..-.+|...+..++|.|
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999888888889999999999998
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=3.6e-11 Score=115.14 Aligned_cols=204 Identities=15% Similarity=0.170 Sum_probs=149.3
Q ss_pred ccccccccccccc-cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCe--EEEEEcccCccceEEEEEe
Q 004679 27 NHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 27 ~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~-~~~~--~~~~~~~~h~~~V~~v~~s 102 (737)
.+.+-+|..+-.. .++.++|..|...|++|+|+|..+.|++|+.|..-.||.. ..++ ....+ ..+....+||.|+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWS 109 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeec
Confidence 4567788877777 7899999999999999999999999999999999999998 4443 33344 4688999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
|. ++.|++|+....|.||-+...+.= +-.-+.-+.+.+.|+++.|+| +.-+|++|+.|+..++|..--...
T Consensus 110 P~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~V 180 (361)
T KOG1523|consen 110 PK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGV 180 (361)
T ss_pred Cc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeecc
Confidence 99 799999999999999988752210 001123456788899999999 668999999999999996421110
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
- ......-|+-+...-..+.......+.+..+.|+|+ +..|+=.+.|..+.+-|....
T Consensus 181 d-------ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 181 D-------EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred c-------cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence 0 000000011111111112233355678999999997 689999999999999988654
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=123.49 Aligned_cols=296 Identities=15% Similarity=0.107 Sum_probs=201.8
Q ss_pred hhccccCCCCCcccccccccccccccccceee-cccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCC-CeEE--EEE
Q 004679 15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSS-RKLL--HSI 88 (737)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~-~~~~--~~~ 88 (737)
.+.--+..+++.+.++.+|+= .+.++...| .||...|..-.|-|. ...|++++.||+|++=.+.. +.+. ..+
T Consensus 151 N~~Gd~l~SgSDD~~vv~WdW--~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 151 NQRGDVLASGSDDLQVVVWDW--VSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred cccCceeeccCccceEEeehh--hccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 344455778889999999993 333344444 479999998899883 46799999999999877643 3332 233
Q ss_pred cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEE
Q 004679 89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s 165 (737)
..|.++|..++.-|++ ..-|.+++.|+.+.-+|++...... .+.....+.. ....++..|.+.+.+++
T Consensus 229 -~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 229 -APHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred -ccccCccceeeecCCC-CCcccccccccceeeeeeccCCccc-------eeeeeccCCccceeeeeEecCCCCcccccc
Confidence 6799999999999997 7889999999999999998643221 1222333333 57889999999889999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004679 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
++.|..+++||.+.-.........+.-|...+. ......|++++|+.+. .-|+++-.|-.|++|..
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-------------~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-------------EDDPVNITGLVYSHDG-SELLASYNDEDIYLFNK 365 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCcccc-------------ccCcccceeEEecCCc-cceeeeecccceEEecc
Confidence 999999999998875432111111111111110 0234578999999864 56666667888999944
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE-EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004679 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT-FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 324 (737)
..+. -... .+......+.+..+.+|.... .|..+- |-|...|+++|+.-|.|.||+-.+++....+.+-.+.+
T Consensus 366 ~~~~-G~~p----~~~s~~~~~~k~vYKGHrN~~-TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 366 SMGD-GSEP----DPSSPREQYVKRVYKGHRNSR-TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred cccc-CCCC----CCCcchhhccchhhccccccc-ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 3221 1000 000111122333343433333 377776 45899999999999999999999988888888888899
Q ss_pred eeeeeccCCCCccCCCC
Q 004679 325 KIMSFTPTLNGLELQPP 341 (737)
Q Consensus 325 ~~~~~~p~~~~~~~~~~ 341 (737)
+++.-+|-.+.++...-
T Consensus 440 NCLEpHP~~PvLAsSGi 456 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGI 456 (559)
T ss_pred eccCCCCCCchhhccCC
Confidence 99999998776665443
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=3.7e-12 Score=127.39 Aligned_cols=215 Identities=14% Similarity=0.173 Sum_probs=165.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
..-..+.++.+|..|+.|+..|.|-.+|+.+++....+. -...|.++.|..+ .++|+.+ ....++|||-.--
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~Gt--- 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNGT--- 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCCc---
Confidence 344678999999999999999999999999999888772 4578999999988 4666655 5678999997631
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
.++.++.| ..|..+.|-| .--+|++++..|.++.-|+..++.+. .
T Consensus 202 --------ElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa-------------------------~ 246 (545)
T KOG1272|consen 202 --------ELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVA-------------------------S 246 (545)
T ss_pred --------EEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhH-------------------------H
Confidence 15556544 4688999999 55788899999999999999998542 2
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004679 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
+....+.+..++-+|-+ ..+-+|...|+|.+|...+..++..+. .|.+ +|.++++.++
T Consensus 247 ~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiL--------------------cH~g-~V~siAv~~~ 304 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKIL--------------------CHRG-PVSSIAVDRG 304 (545)
T ss_pred HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHH--------------------hcCC-CcceEEECCC
Confidence 22234566778888874 689999999999999999887665543 1333 6999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004679 291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 291 g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
|+|+++++.|..++|||+++...+..... .++...++++.
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred CcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 99999999999999999999664333332 44444444444
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.9e-10 Score=125.26 Aligned_cols=235 Identities=13% Similarity=0.101 Sum_probs=141.9
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004679 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
..|.+++.. ....+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... + ........+.+|+|+
T Consensus 184 ~~l~i~D~~---g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSD---GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCC---CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC
Confidence 346666632 2334556677788999999999999988764 3469999998876533 2 233445568899999
Q ss_pred CCCCEE-EEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc--EEEEEcCC
Q 004679 105 TSDELV-VSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQ 179 (737)
Q Consensus 105 ~~~~~l-~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~ 179 (737)
|+.| ++.+.+| .|++||+..+. ...+..+.......+|+|++..++++...+|. |.++|+.+
T Consensus 259 --G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 259 --GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred --CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 5655 4556665 58888887532 23334444455678999955434444444555 55556554
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQK 256 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~ 256 (737)
+.. ..+.. ........+|+|+ ++.++..+.++ .|.+||+.+++.. .+.
T Consensus 326 g~~-----------------------~~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt- 376 (433)
T PRK04922 326 GSA-----------------------ERLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT- 376 (433)
T ss_pred CCe-----------------------EEeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-ECC-
Confidence 431 11111 0122345799997 46666654332 6999999766532 110
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004679 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
.+. ......|+|||++|+..+.+ +.|+++++.. ............+...+|+|
T Consensus 377 ------------------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 377 ------------------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 001 13346899999998877763 4688888754 33333333334445556665
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.6e-11 Score=119.51 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=131.9
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
.+++|+++ |..+++|+.||++|+|+.... ..+.....|...|.++.|+| ++++|++-+.| ...+|+
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence 68999999 799999999999999996642 22555677999999999999 67899999999 999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--Cc-EEE-EEeCCCcEEEEECCCCCCcc
Q 004679 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH-LLL-VGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~-~l~-t~s~Dg~i~iwd~~~~~~~~ 252 (737)
++++..+... +......-...|.|+.++ +. +++ .-..-+.|+.||+...+.-.
T Consensus 214 ~~~g~~~a~~-----------------------t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 214 VNTGAALARK-----------------------TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred eccCchhhhc-----------------------CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 9998543111 111122334456666542 12 222 23344677777775443211
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeecCCCCeeeeecc
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTP 331 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~p 331 (737)
.+. .......+. .|++++.+++|++++.|+.||.|-|++..+.+.... ...|...++.+.|+|
T Consensus 271 ~l~--------------~~~~~~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 271 FLR--------------LRKKIKRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred ccc--------------hhhhhhccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 000 000001122 499999999999999999999999999998765443 334677899999999
Q ss_pred CCCCccC
Q 004679 332 TLNGLEL 338 (737)
Q Consensus 332 ~~~~~~~ 338 (737)
+.+.+..
T Consensus 335 dsr~~~s 341 (398)
T KOG0771|consen 335 DSRYLAS 341 (398)
T ss_pred CcCcccc
Confidence 8776655
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.8e-10 Score=122.31 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=136.1
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE-ECCC--
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA-- 117 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg-- 117 (737)
+.+..+...+.+.+|||||+.|+..+ .+..|.+||+.+++..... .....+...+|+|+ |..|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence 34445667899999999999888654 2457999999887643322 23334557899999 6766644 4455
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccce
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~ 195 (737)
.|.+||+.... ...+..+...+....|+|++..++++...++...+| |+..+..
T Consensus 268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~------------- 323 (429)
T PRK03629 268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP------------- 323 (429)
T ss_pred EEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-------------
Confidence 48888887532 223333445678899999553344444444555555 4444321
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
..+.. .........|+|++ +.++..+.+ ..|.+||+.++... .+.
T Consensus 324 ----------~~lt~---~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt----------------- 371 (429)
T PRK03629 324 ----------QRITW---EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLT----------------- 371 (429)
T ss_pred ----------EEeec---CCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-EeC-----------------
Confidence 11111 11234567899974 666655433 35888898766421 110
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeCCCe---EEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEH---VYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
... ......|+|||++|+.++.++. ++++++.. .....+..+...+...+|+|.
T Consensus 372 --~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 372 --DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCCC
Confidence 000 1234689999999999998764 67777743 444444445556677778774
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=8.5e-11 Score=115.58 Aligned_cols=235 Identities=10% Similarity=0.085 Sum_probs=159.8
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEEECC--CcE
Q 004679 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEV 119 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--g~I 119 (737)
....+++|..++.. ...|++|-.+|.+.+|....+. .+..+ .-...+..+.-++.. ..++++|+.. ..+
T Consensus 101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINEL 175 (412)
T ss_pred cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccce
Confidence 33444555555543 3468888899999999987432 22222 223667778777775 6788889998 889
Q ss_pred EEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.|||+... .+.......+. ..+. .-.-+++++.|-+.. ...|++++.-+.+++||.+.++.+
T Consensus 176 kiwdle~~-~qiw~aKNvpn-D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP-------------- 239 (412)
T KOG3881|consen 176 KIWDLEQS-KQIWSAKNVPN-DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP-------------- 239 (412)
T ss_pred eeeecccc-eeeeeccCCCC-ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--------------
Confidence 99999864 21111100000 0000 012356788898731 578999999999999999977633
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
+..+.-.+.++.++...|. ++.+++|..-+.+..||++.+....... . .
T Consensus 240 ----------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------------------k-g 288 (412)
T KOG3881|consen 240 ----------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGL-------------------K-G 288 (412)
T ss_pred ----------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeecccc-------------------C-C
Confidence 3334445678999999997 6899999999999999999887543311 1 2
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004679 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
..+.|+++..+|.+++|++++-|..|+|+|+++.+.....|. ....+.+-+.+..
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDV 343 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCc
Confidence 223599999999999999999999999999999554444443 3344455555543
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2e-10 Score=111.67 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=140.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
-.+..++|++.-.-+|.+..|-.|++||-.. ++...++......|+|++|-|.+ ..-|+.|+..| |+||........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCccccc
Confidence 4678899999777788999999999999766 55555645567889999999997 77888888755 899987642211
Q ss_pred CCCCC--CCCC--ceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 131 GLDDN--AITP--SALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 131 ~~~~~--~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
..... ...+ +....+| .+|+++.|.++ +..+++++ .|..|.+||..++..++..
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~------------------- 234 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLI------------------- 234 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCccccc-------------------
Confidence 10000 0011 1222344 78999999995 56666665 4678999999998754211
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
+...+.+.-+.|+|+ +.+|+++..|+..++|.... .....- .+ .++ .|..
T Consensus 235 ------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw-----------------~l----gsg-rvqt 285 (445)
T KOG2139|consen 235 ------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKERW-----------------IL----GSG-RVQT 285 (445)
T ss_pred ------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecce-----------------ec----cCC-ceee
Confidence 123456788999998 58999999999999995542 211100 00 112 5999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+|+|+|++|+.+... .-++|.+.-
T Consensus 286 acWspcGsfLLf~~sg-sp~lysl~f 310 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSG-SPRLYSLTF 310 (445)
T ss_pred eeecCCCCEEEEEEcC-CceEEEEee
Confidence 9999999987766553 334444443
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9.9e-10 Score=119.09 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=104.7
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
.|.+||.+..... .+ ..+...+.+.+|+|+ |+.|+..+. +..|.+|++..+.... +..+. ..
T Consensus 180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~---~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFP---RH 244 (429)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCC---CC
Confidence 6889998765433 33 346678999999999 687776542 4579999987543211 22222 33
Q ss_pred eeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004679 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
+....|+|++..++++.+.+| .|.+||+.++... .+.. ....+....|+|++
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPDG 298 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPDS 298 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCCC
Confidence 456899996544555555555 4888898765421 1111 12345678999984
Q ss_pred CcEEEEEeC-CCcEEEE--ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---C
Q 004679 228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E 301 (737)
Q Consensus 228 ~~~l~t~s~-Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g 301 (737)
+.|+..+. ++...+| |+.++... .+. ..+ .......|+|||++|+..+.+ .
T Consensus 299 -~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt------------------~~~---~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 299 -QNLAYTSDQAGRPQVYKVNINGGAPQ-RIT------------------WEG---SQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred -CEEEEEeCCCCCceEEEEECCCCCeE-Eee------------------cCC---CCccCEEECCCCCEEEEEEccCCCc
Confidence 66655554 4444555 55543211 110 011 124568899999998887653 2
Q ss_pred eEEEEEcCC
Q 004679 302 HVYLMDVNH 310 (737)
Q Consensus 302 ~v~iwd~~~ 310 (737)
.|++||+.+
T Consensus 356 ~I~~~dl~~ 364 (429)
T PRK03629 356 HIAKQDLAT 364 (429)
T ss_pred eEEEEECCC
Confidence 466677655
No 221
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=7.1e-11 Score=114.00 Aligned_cols=240 Identities=14% Similarity=0.206 Sum_probs=156.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCc------------cceEEEEEeeCCCCCEEEE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~------------~~V~~v~~sp~~~~~~l~s 112 (737)
.+-|.++.|...|++||||..+|.|.++.-+... ....+ +.|. ..|..+.|.+.++...++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4578999999999999999999999999754332 12223 3343 5688999999876778888
Q ss_pred EECCCcEEEEecCCCCCCCCCC-------------------C------CCCCcee-eccCCCceeEEEEecCCCcEEEEE
Q 004679 113 GAGDAEVRLFNLSRFSGRGLDD-------------------N------AITPSAL-YQCHTRRVKKLAVEVGNPHVVWSA 166 (737)
Q Consensus 113 gs~dg~I~iwd~~~~~~~~~~~-------------------~------~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~ 166 (737)
.+.|.+|++|-+.......... . ...|.+. -.+|+--|.+|.++. +...+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS- 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS- 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-
Confidence 8999999999987543322000 0 0011111 135777889999988 4455544
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
..|-.|.+|++.-... ...+.|++...... -..-|++..|+|...++|+-++..|.|++-|+|
T Consensus 182 ADdLRINLWnlei~d~-----------sFnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQ-----------SFNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred ccceeeeeccccccCC-----------ceeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 4678999999876542 23444444333222 234678899999888899999999999999999
Q ss_pred CCCCc---ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeee
Q 004679 247 MLPPL---TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (737)
Q Consensus 247 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 318 (737)
....- ..+.....-+. -+.|-... -..|..+.|+++|+|+++-..- +|++||+.....+...+
T Consensus 245 ~~aLCd~hsKlfEepedp~-~rsffsei-------IsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPS-SRSFFSEI-------ISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY 310 (433)
T ss_pred hhhhhcchhhhhccccCCc-chhhHHHH-------hhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE
Confidence 53211 01100000000 11111111 1148899999999999877655 99999997755444333
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=5.2e-10 Score=121.41 Aligned_cols=230 Identities=10% Similarity=0.071 Sum_probs=140.8
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD 116 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~d 116 (737)
...+.+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++... + ......+.+.+|+|+ |+.|+ +.+.+
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~ 261 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRD 261 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccC
Confidence 3344556678889999999999998877643 459999999886543 3 233455678999999 66665 66778
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
|...||.+....+. ...+..+........|+|++..+++++..++...+|.+.....
T Consensus 262 g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-------------- 318 (427)
T PRK02889 262 GNSQIYTVNADGSG---------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-------------- 318 (427)
T ss_pred CCceEEEEECCCCC---------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--------------
Confidence 88777776532211 2334445555667889995544444544556777776542210
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
....+.. . .......+|+|+ +++++..+.++ .|.+||+.+++... +.
T Consensus 319 -------~~~~lt~-~--g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------------------ 368 (427)
T PRK02889 319 -------AAQRVTF-T--GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA-LT------------------ 368 (427)
T ss_pred -------ceEEEec-C--CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE-cc------------------
Confidence 0011111 0 112235689997 57777666544 59999998764221 10
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
. .. ......|+|||++|+.++.++ .+++.++. +............+...+|+|.
T Consensus 369 -~-~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 -D-TT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -C-CC--CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 0 00 134578999999998888643 45666663 3433333334455666777774
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=8.1e-11 Score=119.94 Aligned_cols=166 Identities=17% Similarity=0.231 Sum_probs=119.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEc---ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----
Q 004679 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---- 132 (737)
Q Consensus 60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~---- 132 (737)
|.+--|..|-.-|.|.+.|....+..+.+. ...+..|+|++|-|.+ ..+|+.+-.+|.+.+||.....+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 455567778888899998876533222110 1235789999999986 77888888999999998753221110
Q ss_pred --------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 133 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 133 --------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
....-.|+..+.-..+.|..++|+| ++.+||+.+.||.++|||..+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 0001133444444566889999999 7799999999999999999876532
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
...+...+.+.|++|+|| +++|++|+.|..|.||.+...+.+..
T Consensus 326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe
Confidence 222334578899999998 69999999999999999987765443
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.5e-10 Score=119.94 Aligned_cols=224 Identities=11% Similarity=0.067 Sum_probs=139.2
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECC
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~d 116 (737)
...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+ ..+...+.+.+|+|+ |+.| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence 344567778889999999999998887653 468999999888653 33 345667788999999 6655 566666
Q ss_pred Cc--EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCC--cEEEEEcCCCCCCCCCCCCCC
Q 004679 117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 117 g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg--~I~vwdl~~~~~~~~~~~~~~ 191 (737)
+. |.+||+.... ...+..+........|+|++ +.|+..+ .+| .|.++|+..+..
T Consensus 268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~--------- 326 (435)
T PRK05137 268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP--------- 326 (435)
T ss_pred CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe---------
Confidence 66 6666776432 23344455566778999955 5554444 444 467777655431
Q ss_pred ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccc
Q 004679 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (737)
..+.. ....+....|+|++ +.|+....+ ..|.+||+..... ..+.
T Consensus 327 --------------~~lt~---~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt------------- 374 (435)
T PRK05137 327 --------------RRISF---GGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-RILT------------- 374 (435)
T ss_pred --------------EEeec---CCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-Eecc-------------
Confidence 11111 12234567899984 666665433 3577888754321 1110
Q ss_pred cccccCCCCcccceeEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 269 ~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
.+. .+..+.|+|||++|+..+.+ ..++++|+..+.. ..+. ........+|+|.
T Consensus 375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 001 25568999999998776653 2688888866433 2222 2333455566664
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=4e-10 Score=108.07 Aligned_cols=181 Identities=9% Similarity=0.164 Sum_probs=129.8
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc--CCCc
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRR 149 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~ 149 (737)
..|.|||=...+++..+ ....+|.+|.+.++ .++.. ..+.|++|.....-.+ +..+.. ....
T Consensus 75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~---------l~~~et~~NPkG 138 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKL---------LHVIETRSNPKG 138 (346)
T ss_pred ceEEEEecccCcEEEEE--EeccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhh---------eeeeecccCCCc
Confidence 57999997677777776 36789999999987 44444 3678999998842211 222221 2233
Q ss_pred eeEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004679 150 VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s-~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (737)
+.++.-.. +..+||. |-.-|.|.+-|+...+.. .-...+.|...|.|++++-+ |
T Consensus 139 lC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~-G 193 (346)
T KOG2111|consen 139 LCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQ-G 193 (346)
T ss_pred eEeecCCC-CceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCC-c
Confidence 44443333 3334443 445689999999876631 01122468889999999997 6
Q ss_pred cEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004679 229 HLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 229 ~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd 307 (737)
.++||+|..|+ |||||..++.++.++. +|.....|.+++|||+..+|++++..|+|.||.
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~R-------------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELR-------------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeee-------------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 89999999985 8999999998887764 333334699999999999999999999999999
Q ss_pred cCCCC
Q 004679 308 VNHAG 312 (737)
Q Consensus 308 ~~~~~ 312 (737)
++...
T Consensus 255 l~~~~ 259 (346)
T KOG2111|consen 255 LRDTE 259 (346)
T ss_pred eecCC
Confidence 98743
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.2e-09 Score=119.05 Aligned_cols=176 Identities=9% Similarity=0.066 Sum_probs=109.8
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (737)
..|.+||..... ...+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+.. ..+.....
T Consensus 184 ~~l~i~D~~g~~-~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGYN-PQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR-----------ELVASFRG 248 (433)
T ss_pred EEEEEECCCCCC-ceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE-----------EEeccCCC
Confidence 468899986543 3445 456778999999999 6888877643 4699999975432 22222334
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
...+.+|+|++..++++.+.++ .|.+||+.++... .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 4557899996655666666666 4888898776421 111 11122356789998
Q ss_pred CCcEEEEEe-CCCc--EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--
Q 004679 227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (737)
Q Consensus 227 ~~~~l~t~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg-- 301 (737)
+ +.|+.++ .++. |+++|+.+++.. .+. ..+. ....++|+|+|++|+..+.++
T Consensus 303 G-~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt------------------~~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 G-KSIYFTSDRGGRPQIYRVAASGGSAE-RLT------------------FQGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred C-CEEEEEECCCCCceEEEEECCCCCeE-Eee------------------cCCC---CccCEEECCCCCEEEEEECCCCc
Confidence 4 6666554 4454 666666554321 110 0111 234689999999998876543
Q ss_pred -eEEEEEcCCC
Q 004679 302 -HVYLMDVNHA 311 (737)
Q Consensus 302 -~v~iwd~~~~ 311 (737)
.|.+||+.++
T Consensus 360 ~~I~v~d~~~g 370 (433)
T PRK04922 360 YRIAVMDLSTG 370 (433)
T ss_pred eeEEEEECCCC
Confidence 5888887653
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=7.4e-10 Score=105.62 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=100.4
Q ss_pred EEEEEeeCCCCCEEEEEEC----------CCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEE
Q 004679 97 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s 165 (737)
..+.|+|. |++|+.-.. -+...||.++..... ...+. ...++|.+++|+|++..+++.
T Consensus 9 ~~~~W~~~--G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---------~~~i~l~~~~~I~~~~WsP~g~~favi 77 (194)
T PF08662_consen 9 AKLHWQPS--GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---------VESIELKKEGPIHDVAWSPNGNEFAVI 77 (194)
T ss_pred EEEEeccc--CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---------cceeeccCCCceEEEEECcCCCEEEEE
Confidence 45778888 565543322 234666766543221 23332 234579999999955444333
Q ss_pred -EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEE
Q 004679 166 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR 241 (737)
Q Consensus 166 -~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~ 241 (737)
|..++.|.+||++... +... ....++.+.|+|+ +++|++++.+ |.|.
T Consensus 78 ~g~~~~~v~lyd~~~~~--------------------------i~~~--~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 78 YGSMPAKVTLYDVKGKK--------------------------IFSF--GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE 128 (194)
T ss_pred EccCCcccEEEcCcccE--------------------------eEee--cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence 4467899999996221 1111 1346688999997 6888888754 6699
Q ss_pred EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCC
Q 004679 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH 310 (737)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~ 310 (737)
+||.+..+.+.... +. .++.++|+|+|++|+++.. |+.++||+..-
T Consensus 129 ~wd~~~~~~i~~~~---------------------~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKKKISTFE---------------------HS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCEEeeccc---------------------cC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99999776554432 22 3789999999999999975 78999999863
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=1.4e-08 Score=97.59 Aligned_cols=185 Identities=18% Similarity=0.284 Sum_probs=131.5
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccC-ccceEEEEE
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCTKF 101 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~h-~~~V~~v~~ 101 (737)
.....++.+||.+ +.+++.+|. ...+|.++.+.++ +|++.- .+.|.||... .-+.++.+.... .... ++.
T Consensus 71 ky~pNkviIWDD~--k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~ 142 (346)
T KOG2111|consen 71 KYPPNKVIIWDDL--KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL--CSL 142 (346)
T ss_pred CCCCceEEEEecc--cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCce--Eee
Confidence 4467889999944 344555554 4578999999864 455554 4689999987 455566553211 2233 334
Q ss_pred eeCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEEcCC
Q 004679 102 VPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQ 179 (737)
Q Consensus 102 sp~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwdl~~ 179 (737)
.|..+..+||.- -.-|.|.|-|+..... .+...+.+|.+.|.|++.+. .+.++||+|..|+ |++||..+
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC
Confidence 454424455443 3469999999986332 12467889999999999998 6699999999987 78999999
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+..+ .+++.|. ....|.+++|+|+ ..+||++|+.|+++||.++...
T Consensus 214 g~~l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 214 GTLL--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CcEe--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 8744 2333332 2367999999997 6899999999999999998644
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.6e-09 Score=109.94 Aligned_cols=255 Identities=17% Similarity=0.193 Sum_probs=160.3
Q ss_pred cccccccceeecccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEE---------Ec----------------
Q 004679 36 LVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHS---------IE---------------- 89 (737)
Q Consensus 36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~---------~~---------------- 89 (737)
+.++.+++..|. |...-+.|..+|||++ ||||.....|++||+........ |.
T Consensus 38 ~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 38 YRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred HHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence 344455555553 7788899999999986 56888899999999976432111 00
Q ss_pred --ccC-----------ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004679 90 --TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (737)
Q Consensus 90 --~~h-----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 156 (737)
..| ...-.+++++.-+ .++++.|+ ...|+=+++.. ++ .+..+....+.++++..+
T Consensus 117 ~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~~gs-g~evYRlNLEq--Gr--------fL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYLVGS-GSEVYRLNLEQ--GR--------FLNPFETDSGELNVVSIN 184 (703)
T ss_pred eeeehhhcCeeeeeecCcCCccccccCCC-ccEEEeec-CcceEEEEccc--cc--------cccccccccccceeeeec
Confidence 000 0111233333321 33444443 34455555554 32 256666667889999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC
Q 004679 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (737)
Q Consensus 157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~ 236 (737)
+-+ .+|++|+.+|.|.+||.+....+..+ +.... ..-.........|+++.|+.+ +-.+++|..
T Consensus 185 ~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l------------~~~~~--v~s~pg~~~~~svTal~F~d~-gL~~aVGts 248 (703)
T KOG2321|consen 185 EEH-GLLACGTEDGVVEFWDPRDKSRVGTL------------DAASS--VNSHPGGDAAPSVTALKFRDD-GLHVAVGTS 248 (703)
T ss_pred Ccc-ceEEecccCceEEEecchhhhhheee------------ecccc--cCCCccccccCcceEEEecCC-ceeEEeecc
Confidence 944 78989999999999999887643111 00000 000011112345899999986 789999999
Q ss_pred CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCcce
Q 004679 237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
+|.+.|||+|+.+++..-. |+..- +|..+.|.+.+. --++......++|||-.+++...
T Consensus 249 ~G~v~iyDLRa~~pl~~kd-------------------h~~e~-pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKD-------------------HGYEL-PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred CCcEEEEEcccCCceeecc-------------------cCCcc-ceeeecccccCCCceEEecchHHhhhcccccCCcee
Confidence 9999999999987654322 22222 699999987532 23334445689999999977555
Q ss_pred eeeecCCCCeeeeeccCCCCccCCC
Q 004679 316 MRYTVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 316 ~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
..... ..++.+|+-|...-+....
T Consensus 309 siEpt-~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 309 SIEPT-SDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ecccc-CCcCceeeecCCceEEEec
Confidence 44443 3488888888765544433
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=4.7e-09 Score=100.98 Aligned_cols=270 Identities=13% Similarity=0.100 Sum_probs=166.9
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004679 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
+..+++|+ +...+-...+..-..++.+++|||||+ .|.+..-|-.|.||.+.+.+.... +-.+..+..++|+|+
T Consensus 70 ~~~vqvws--l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~d- 144 (447)
T KOG4497|consen 70 DPKVQVWS--LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPD- 144 (447)
T ss_pred cceEEEEE--eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCC-
Confidence 34566666 222333345556678899999999995 556677788999999998765543 233455688899998
Q ss_pred CCCEEEEEECC------------------------------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 106 SDELVVSGAGD------------------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 106 ~~~~l~sgs~d------------------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
|++.+.++.- ..+.+||.-- +.........-.
T Consensus 145 -g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-----------eykv~aYe~~lG 212 (447)
T KOG4497|consen 145 -GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-----------EYKVYAYERGLG 212 (447)
T ss_pred -CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-----------hheeeeeeeccc
Confidence 6766655432 1122232210 000001122356
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC-----------------------------------CCC-Ccc
Q 004679 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------------------------SSH-QEC 193 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~-----------------------------------~~~-~~~ 193 (737)
+..++|+| .+++|+.|+.|+++++.+--+.+...... ..+ ...
T Consensus 213 ~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 213 LKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred eeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 78899999 56999999999999987654433321000 000 000
Q ss_pred ceEEEeccC-----CceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--CcEEEEECCCCCCcccccCCCCCCCCccc
Q 004679 194 RNILLDLRC-----GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 194 ~~~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (737)
....+.... ...+.....+.....+.-++|+++ ..+++|-.+. +.+.+||++..+....+..
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------- 360 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD-STYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------- 360 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCC-ceEEeeecCCCCceEEEEechhhhhhhhhhh----------
Confidence 000010000 001111223344567788999997 4677776543 6799999998765444321
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
..+|....|+|....|+.+.....+++|...- .........|..+..++|+..+.-+..
T Consensus 361 ------------k~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 361 ------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred ------------ccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEE
Confidence 12599999999999999999999999998765 444455556777888888876655443
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=9.3e-10 Score=107.15 Aligned_cols=199 Identities=10% Similarity=0.059 Sum_probs=137.9
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCc
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 171 (737)
+..+..++|++. -..++++..|-.|++|+-.... ...++ .....|+|++|.|.....|+.|+.. .
T Consensus 98 ~~dlr~~aWhqH--~~~fava~nddvVriy~ksst~-----------pt~Lks~sQrnvtclawRPlsaselavgCr~-g 163 (445)
T KOG2139|consen 98 EIDLRGVAWHQH--IIAFAVATNDDVVRIYDKSSTC-----------PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-G 163 (445)
T ss_pred hcceeeEeechh--hhhhhhhccCcEEEEeccCCCC-----------CceecchhhcceeEEEeccCCcceeeeeecc-e
Confidence 355788999997 5788999999999999987511 12222 2356799999999888889888874 5
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECCCCCC
Q 004679 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP 250 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~~~~ 250 (737)
|.+|............. +-......+...++| ..|++++|++++ ..+++++ .|..|+|||..++..
T Consensus 164 IciW~~s~tln~~r~~~-----------~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIR-----------MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred eEEEEcCcccccccccc-----------cccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCc
Confidence 99998765433211100 001112234445555 789999999984 6677766 567899999987763
Q ss_pred cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCcceeeeecCCCCeeeee
Q 004679 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYTVGDASKIMSF 329 (737)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 329 (737)
+... .. ..+.++-+.|||||.+|++++-|+..++|+.. +........+.+ .+...+|
T Consensus 231 ~pL~-------------------~~--glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacW 288 (445)
T KOG2139|consen 231 IPLI-------------------PK--GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACW 288 (445)
T ss_pred cccc-------------------cc--CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeee
Confidence 3211 01 11248889999999999999999999999544 433444444445 8888999
Q ss_pred ccCCCCccCCC
Q 004679 330 TPTLNGLELQP 340 (737)
Q Consensus 330 ~p~~~~~~~~~ 340 (737)
+|.+..+.+..
T Consensus 289 spcGsfLLf~~ 299 (445)
T KOG2139|consen 289 SPCGSFLLFAC 299 (445)
T ss_pred cCCCCEEEEEE
Confidence 99887665544
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=6.6e-09 Score=112.80 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=106.5
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (737)
..|.++|... .....+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+.. ..+.....
T Consensus 176 ~~L~~~D~dG-~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDADG-QNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKG 240 (427)
T ss_pred cEEEEECCCC-CCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCC
Confidence 4577777643 333444 457788999999999 6888776643 4599999986432 22222334
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (737)
.+...+|+|++..++++.+.++...+|.+...... ...+. .+........|+|++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------~~~lt---~~~~~~~~~~wSpDG- 295 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------LRRLT---QSSGIDTEPFFSPDG- 295 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------cEECC---CCCCCCcCeEEcCCC-
Confidence 55689999966555567788888777765432100 01111 112234557899984
Q ss_pred cEEEEEe-CCCcEEEEECC--CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC---e
Q 004679 229 HLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H 302 (737)
Q Consensus 229 ~~l~t~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~ 302 (737)
+.|+..+ .++...+|.+. .+.. ..+. + .+. .....+|+|+|++|+..+.++ .
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-----------~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAA-QRVT-----------F-------TGS---YNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCce-EEEe-----------c-------CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence 5555444 45666677654 3221 1100 0 111 134578999999998877654 5
Q ss_pred EEEEEcCCC
Q 004679 303 VYLMDVNHA 311 (737)
Q Consensus 303 v~iwd~~~~ 311 (737)
|++||+.++
T Consensus 354 I~v~d~~~g 362 (427)
T PRK02889 354 LYVQDLATG 362 (427)
T ss_pred EEEEECCCC
Confidence 888887663
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.15 E-value=2.6e-09 Score=101.94 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=100.8
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEcccCccceEEEEEeeCCCCCEEEE--EECCCcEEE
Q 004679 55 AISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVS--GAGDAEVRL 121 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~----------dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s--gs~dg~I~i 121 (737)
.|.|+++|++|+.-.. -+...||.++. ......+.....++|.+++|+|+ ++.|+. |..++.|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 5889999987664322 13355665532 23344442334567999999999 576544 446789999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
||++. +++..+ +...+..+.|+| ++++|++++.+ |.|.+||+++.+.+
T Consensus 88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i--------------- 138 (194)
T PF08662_consen 88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI--------------- 138 (194)
T ss_pred EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence 99972 224444 356778999999 66888887643 66999999976532
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC------CCcEEEEECC
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~------Dg~i~iwd~~ 246 (737)
... . ...+..++|+|+ +++|+++.. |+.++||+..
T Consensus 139 ----------~~~-~-~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 ----------STF-E-HSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ----------ecc-c-cCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 111 1 234689999998 578888764 7889999985
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=2.9e-09 Score=101.16 Aligned_cols=230 Identities=13% Similarity=0.178 Sum_probs=160.6
Q ss_pred cccccccccccccccceeec-ccCCceEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeEEEEEccc-----CccceE
Q 004679 28 HSLQMHSSLVRRLSQERELE-GHQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETG-----HSANVF 97 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~---~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~-----h~~~V~ 97 (737)
+++-+|+..-.+..+..+++ --+..+..|.|+. +|. .|+-+..+|.|.++..........+..- ......
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 44555553333333333333 2346788888875 455 6677888899999988765554444211 112356
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
++.|++. +..++++-.+|.+.+-+..... .+.++.++.|.-.+.-.+|+..+++++++|+.|+.+..||+
T Consensus 126 slD~~~~--~~~i~vs~s~G~~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 126 SLDISTS--GTKIFVSDSRGSISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred EEEeecc--CceEEEEcCCCcEEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 7889888 6788888889999855544322 23466889999999999999888899999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccC
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQK 256 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~ 256 (737)
|.... . .......|...|.+|.-+|..+..++||+.|..|++||.|+ ++++..-
T Consensus 196 R~p~~-------------~----------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-- 250 (339)
T KOG0280|consen 196 RIPKT-------------F----------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-- 250 (339)
T ss_pred cCCcc-------------e----------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--
Confidence 94331 1 12223457788999999998889999999999999999994 4443221
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCC
Q 004679 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.-++.|+.+.++|.- ..|++++.-+.++|-+.....
T Consensus 251 --------------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 251 --------------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred --------------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 112359999999953 345666666677787777644
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=1.7e-10 Score=115.69 Aligned_cols=206 Identities=16% Similarity=0.141 Sum_probs=151.3
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
+.-++-++.| ..|..|.|-|.--+|++++..|.++--|+.+|+.+..+ ....+.+..++-+|. ...+-.|..+|+|
T Consensus 200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qNP~--NaVih~GhsnGtV 275 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQNPY--NAVIHLGHSNGTV 275 (545)
T ss_pred CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcCCc--cceEEEcCCCceE
Confidence 3444555555 57889999999899999999999999999999999988 667788999999998 5888999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+|..... +|+..+..|.++|.+|++.+ ++++++|.+.|..++|||++....+..
T Consensus 276 SlWSP~sk----------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t-------------- 330 (545)
T KOG1272|consen 276 SLWSPNSK----------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHT-------------- 330 (545)
T ss_pred EecCCCCc----------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccce--------------
Confidence 99998752 45788889999999999999 779999999999999999998763310
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
+. . ......++||.. .+|| .+....+.||. .-.+.. +.......|. .
T Consensus 331 --------~~---t-p~~a~~ls~Sqk--glLA-~~~G~~v~iw~d~~~~s~------------~~~~pYm~H~----~- 378 (545)
T KOG1272|consen 331 --------YR---T-PHPASNLSLSQK--GLLA-LSYGDHVQIWKDALKGSG------------HGETPYMNHR----C- 378 (545)
T ss_pred --------ee---c-CCCccccccccc--ccee-eecCCeeeeehhhhcCCC------------CCCcchhhhc----c-
Confidence 00 0 234556777753 2444 44556788994 222111 0000001111 1
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004679 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iw 306 (737)
..+|..+.|.|-...|-+|...|.-.+.
T Consensus 379 ~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 379 GGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred CcccccceeccHHHeeeccccCCceeEe
Confidence 2269999999988888888776654443
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=2.4e-09 Score=117.89 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=64.6
Q ss_pred EeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCC-CceEEEEecCCCCeEEEEecCCcEEEEc
Q 004679 619 YVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (737)
Q Consensus 619 ~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~-~~V~~v~~sp~~~~l~S~~~Dg~i~lW~ 697 (737)
-.||..+++.+. |.|. +++|+++|.++++|+. .+..+..+.+|. +.|+.++..+....++|+|.||.+++|+
T Consensus 214 ~fgHsaRvw~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 214 GFGHSARVWACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred cccccceeEEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 457888887444 6777 9999999999999955 455566999995 5799999999999999999999999999
Q ss_pred CCCCC
Q 004679 698 PSASV 702 (737)
Q Consensus 698 ~~~~~ 702 (737)
+...-
T Consensus 287 l~~r~ 291 (967)
T KOG0974|consen 287 LNGRG 291 (967)
T ss_pred hhccc
Confidence 87653
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2e-09 Score=110.76 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=142.2
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004679 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (737)
Q Consensus 65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 144 (737)
|..++....|.-++++.|..+..| ....+.+++|..++. -.+|++|+.+|.|-.||.+....... ........
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~~v~ 220 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAASSVN 220 (703)
T ss_pred EEEeecCcceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eecccccC
Confidence 334444457888899999998888 566789999999998 47899999999999999986432111 01111222
Q ss_pred cCC-----CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004679 145 CHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (737)
Q Consensus 145 ~h~-----~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (737)
.|. ..|+++.|+. ++-.+++|+.+|.+.+||++..++. +........+|.
T Consensus 221 s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------LVKDHGYELPIK 275 (703)
T ss_pred CCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------eecccCCcccee
Confidence 233 3499999987 5788999999999999999998754 222233456788
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
.+.|.+.+.+--++......++|||-.++++...+.. ...++.+|+-|++.++++|..
T Consensus 276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----------------------t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----------------------TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eecccccCCCceEEecchHHhhhcccccCCceeeccc----------------------cCCcCceeeecCCceEEEecC
Confidence 8889776444444555678999999999987765531 114889999999999999999
Q ss_pred CCeEEEEEcCCCC
Q 004679 300 GEHVYLMDVNHAG 312 (737)
Q Consensus 300 dg~v~iwd~~~~~ 312 (737)
++.+..|=+...+
T Consensus 334 ~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 334 SSKMHTYYIPSLG 346 (703)
T ss_pred CCcceeEEccccC
Confidence 8887777666543
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7.1e-08 Score=99.74 Aligned_cols=223 Identities=12% Similarity=0.189 Sum_probs=132.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE-----ECC-----CcE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AGD-----AEV 119 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-----s~d-----g~I 119 (737)
..+++..+++++|+++|.+.. ..++|++..++..+.+.. -. .+.++.|+|. +.+|.+= ..+ --+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE--LK-KTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec--cc-eeeeeeeccc--ccccccccccccccCCCCCCCce
Confidence 345778889999998887754 689999999886544442 22 7899999998 6777652 112 236
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+|++.+.... ....+..... ++..|+.+. . ++.--..+.+++|++...+.+
T Consensus 108 ~v~~vet~~~~---------s~~q~k~Q~~-W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~---------------- 159 (566)
T KOG2315|consen 108 LVYNVETGVQR---------SQIQKKMQNG-WVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTI---------------- 159 (566)
T ss_pred eeeeeccceeh---------hheehhhhcC-cccccccch-h-hhhhhhcceEEEEecCCccce----------------
Confidence 68888762111 1111112221 578888743 3 333334567999998875422
Q ss_pred ccCCceeeccCCCCCccceEEEEEecC-CCcEEEE-----EeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~t-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
..+.+...++.+.++|. .+..+|+ .+.-+.|+||......+...+ ..+.|.
T Consensus 160 ----------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~--------a~ksFF----- 216 (566)
T KOG2315|consen 160 ----------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV--------ANKSFF----- 216 (566)
T ss_pred ----------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh--------hhcccc-----
Confidence 11123456788888886 3334443 355678999987632211111 011110
Q ss_pred CCCCcccceeEEEEcCCCCE-EE-EEeC-C---------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004679 274 EHGRSSLHLTHVTFSPNGEE-VL-LSYS-G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~-l~-~g~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
...-..+.|.+-|.- |+ +.+. | ..+++.+++ +...........++..++|+|+...
T Consensus 217 -----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 217 -----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred -----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCE
Confidence 111334678775542 22 2222 3 368888888 4555566666899999999997543
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=9.7e-08 Score=97.51 Aligned_cols=230 Identities=13% Similarity=0.148 Sum_probs=143.3
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc------
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE------ 118 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~------ 118 (737)
.+..-.-++..++|||.|.+|++.... .|.+|+-..+..+..+ ....|..+.|+|. +.+|++=+..+.
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~---~~~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF---RHPDVKYLDFSPN--EKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee---ecCCceecccCcc--cceeeeeccCCccChhhc
Confidence 333355688999999999999988764 6899998877655555 2356899999999 799988765444
Q ss_pred ---------EEEEecCCCCCCCCCCCCCCCceeeccCCCc--ee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004679 119 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
+.+||+..+.. +..+.....+ .. -+.|+.++ .+++-. ....++++++ +....
T Consensus 101 ~sp~~~~n~~~vwd~~sg~i----------v~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~--- 164 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMI----------VFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIE--- 164 (561)
T ss_pred cCCccccCceeEEeccCcee----------EeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccc---
Confidence 89999986432 4444444333 33 56777744 555443 3357999997 33211
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC-CCcEEEE-----EeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~t-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
...........+....|+|. +...||. .+.++.+++|.+.....+..-
T Consensus 165 --------------------~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk------ 218 (561)
T COG5354 165 --------------------EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK------ 218 (561)
T ss_pred --------------------cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee------
Confidence 00000111345667777775 2223332 466788999998755433221
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 329 (737)
.+ .. - .=..+.|.+.|.+|+.-.. ...++++++.... ........+++..++|
T Consensus 219 -----~l-----fk--~---~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W 282 (561)
T COG5354 219 -----NL-----FK--V---SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTW 282 (561)
T ss_pred -----ee-----Ee--e---cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeee
Confidence 00 00 0 1224778898888665422 2468899988533 3333366889999999
Q ss_pred ccCCCCccC
Q 004679 330 TPTLNGLEL 338 (737)
Q Consensus 330 ~p~~~~~~~ 338 (737)
.|.....+.
T Consensus 283 ~p~S~~F~v 291 (561)
T COG5354 283 EPLSSRFAV 291 (561)
T ss_pred cccCCceeE
Confidence 997654433
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=1.4e-08 Score=106.88 Aligned_cols=189 Identities=12% Similarity=0.134 Sum_probs=119.2
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
..+++.+-+ ..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++. . .....+++++++
T Consensus 14 ~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-~-G~~~~~i~~s~D- 88 (369)
T PF02239_consen 14 GSGSVAVID--GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-V-GGNPRGIAVSPD- 88 (369)
T ss_dssp GGTEEEEEE--TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T-
T ss_pred CCCEEEEEE--CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-c-CCCcceEEEcCC-
Confidence 345666666 55677788887654444457899999999999999999999999999999984 3 345688999999
Q ss_pred CCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 106 SDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 106 ~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
|.+++++ ...+.+.++|..+.+ ++..+.. ....+..+..+|....++++.-..+.|.+.|.
T Consensus 89 -G~~~~v~n~~~~~v~v~D~~tle----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 89 -GKYVYVANYEPGTVSVIDAETLE----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp -TTEEEEEEEETTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEecCCCceeEecccccc----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 6877665 468999999988632 2333322 23467788888855445545444577877787
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
...+.. ....+ ..........|+|++..++++...+..|-++|..+++.+..+
T Consensus 158 ~d~~~~------------~~~~i------------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 158 SDPKNL------------KVTTI------------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp TTSSCE------------EEEEE------------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cccccc------------ceeee------------cccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 665321 00000 012345678999975334455567789999999987765443
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.05 E-value=2.8e-08 Score=108.32 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=124.8
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCC-
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg- 117 (737)
.+.+..+...+.+.+|+|||++|+.+..+ ..|.+||+.+++.... ..+...+.+++|+|+ +..|+ +.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence 45566677789999999999999877643 4799999998865432 235556778999999 56554 555544
Q ss_pred -cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccc
Q 004679 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|++|++.... ...+..+........|+|++..++++...++ .|.++|+.+++..
T Consensus 258 ~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----------- 315 (417)
T TIGR02800 258 PDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----------- 315 (417)
T ss_pred ccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 58888887532 2223334444556789995544444444444 4666676554311
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
.+. .+........|+|+ +++++.++.++ .|.+||+.++.. ..+.
T Consensus 316 ------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~---------------- 362 (417)
T TIGR02800 316 ------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGE-RVLT---------------- 362 (417)
T ss_pred ------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCe-EEcc----------------
Confidence 111 01234456789997 46777777665 788888876431 1110
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCC---eEEEEEc
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDV 308 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~v~iwd~ 308 (737)
. .. ......|+|+|++|+.++.++ .+++.+.
T Consensus 363 ---~-~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 363 ---D-TG--LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ---C-CC--CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 0 00 123458999999998887754 3555553
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.05 E-value=5.2e-09 Score=101.47 Aligned_cols=245 Identities=18% Similarity=0.186 Sum_probs=176.0
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
.++.....++||.+.|++...-|..+-+++.+.|.++|||- .+.++.-..+......+++++++.++ -..|+.|-.+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence 55666778999999999988888888899999999999994 45566655554456788999999998 4889999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC----------
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA---------- 186 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~---------- 186 (737)
|++.-+.+..-- ++....+....|...+..+.|+- ....+++.+.|..+..--.+.+......
T Consensus 90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999988776421 11234566678999999999987 5578889999987776555554432100
Q ss_pred ------CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 187 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 187 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
..+..........+.......+....+|...+.+++|.|. ..++.+|..|..+.+||+...+-+.-
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~------- 234 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAY------- 234 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceee-------
Confidence 0001111111122222233445567789999999999997 57999999999999999975432111
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
...+|.. .|..+..-+--+.+++++.||.|.+||++...
T Consensus 235 ------------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 235 ------------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ------------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 1123433 47777777778889999999999999998743
No 243
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=1.7e-09 Score=114.11 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=154.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
.+++.++.++|.|+-+|.++.-| +.+.|+..- ....-+...-.-.|-.+.|+|..-..+-+.......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999888765 455676543 2222221112345778899987544566666666777899998655
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
.+. ....+.+|+..|+.+-|+|+.+.++++++.|-.+..||++..... +
T Consensus 103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p------------------------~ 151 (1081)
T KOG0309|consen 103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP------------------------F 151 (1081)
T ss_pred ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc------------------------e
Confidence 432 245677899999999999999999999999999999999987532 1
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
.....-......++|+-.++. +++.+....|++||++.+.. +..+ .+|.. .|..++|
T Consensus 152 ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~--------------------K~~vs-~vn~~~f 209 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSL--------------------KGHVS-SVNSIDF 209 (1081)
T ss_pred eeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEe--------------------cccce-eeehHHH
Confidence 111111234456788877664 44556678899999997652 2111 11222 3777777
Q ss_pred cC-CCCEEEEEeCCCeEEEEEcCCCCcc-eeeeecCCCCeeeeeccCCC
Q 004679 288 SP-NGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 288 sp-~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~ 334 (737)
.. ....+.+.+.|++|.+||....... ........++.--+|.|.+.
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 75 3345888899999999999875532 23334455555555555443
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=7.3e-09 Score=114.24 Aligned_cols=193 Identities=10% Similarity=0.111 Sum_probs=148.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce--EE---EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004679 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV--FC---TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V--~~---v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
.+.-+..+++.+..+..+.+||...+.....+. +...+ .+ +-++++ .-++++|+.-+.|.+|+... +.
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~-dn-- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHE-DN-- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccc-cC--
Confidence 333456678888899999999998877666652 22221 12 234444 45788999999999999983 21
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004679 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
. -..+.+|.+.|.++.++- ++.++++.|.|+++++|++.+.+... ...
T Consensus 167 ------~-p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~ 214 (967)
T KOG0974|consen 167 ------K-PIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTG 214 (967)
T ss_pred ------C-cceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------ccc
Confidence 1 225789999999999998 67999999999999999999987441 223
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004679 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
-+|...+..++|.|. .+++++.|.++++|+.+..+. ..+ .+|.+..|..++..++.
T Consensus 215 fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l-~~y--------------------~~h~g~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQL-EVY--------------------DEHSGKGIWKIAVPIGV 270 (967)
T ss_pred ccccceeEEEEeccc---eeEEeccceEEEEEeccccee-hhh--------------------hhhhhcceeEEEEcCCc
Confidence 367889999999984 999999999999997653321 111 34666679999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCC
Q 004679 292 EEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 292 ~~l~~g~~dg~v~iwd~~~~~ 312 (737)
..+++++.|+.+++|++....
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eEEEeeccCcchhhhhhhccc
Confidence 999999999999999988743
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.5e-08 Score=107.54 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=126.0
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCCc--
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE-- 118 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg~-- 118 (737)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... + ..........+|+|+ ++.|+ +.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence 344455678889999999988876532 358889998876432 2 122333457899999 56554 5666776
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceE
Q 004679 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
|.++|+..+. ...+..+........|+|++..++++...++. |.++|+.+++.
T Consensus 288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------------- 342 (448)
T PRK04792 288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------------- 342 (448)
T ss_pred EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------
Confidence 6666765422 23333344556778999965545555544554 55556655431
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCc--EEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
..+.. .. ......+|+|++ +.|+..+ .++. |.++|+.++... .+.
T Consensus 343 ---------~~Lt~-~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt------------------ 390 (448)
T PRK04792 343 ---------SRLTF-EG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-VLT------------------ 390 (448)
T ss_pred ---------EEEec-CC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-Ecc------------------
Confidence 11110 01 112346899985 5555544 3443 555677655421 110
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
.. . ......|+|+|++|+..+.+ + .+++++.. +................+|+|.
T Consensus 391 ~~-~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 391 ST-R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CC-C---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 00 0 01234799999998877663 3 47777764 3433333333344556667763
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=4.7e-08 Score=106.77 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=132.1
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCC-
Q 004679 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg- 117 (737)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... + ......+...+|+|+ |+.|+ +...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence 34555677789999999999988876543 468999998886543 3 223344567899999 67665 555555
Q ss_pred -cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccc
Q 004679 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|.+||+.... ...+..+........|+|++..++++...++ .|.++|+.+++..
T Consensus 267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 57777887532 2233334445667889996555555554444 4666666555411
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-CC--cEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
.+... . .......|+|++ +.++..+. ++ .|.+||+.+++.. .+.
T Consensus 325 ------------~lt~~-~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt---------------- 371 (430)
T PRK00178 325 ------------RVTFV-G--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSVR-ILT---------------- 371 (430)
T ss_pred ------------EeecC-C--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCEE-Ecc----------------
Confidence 11100 0 112346799975 56665543 33 5788888765421 110
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
... ......|+|+|++++..+.+ ..++++++.. .....+......+...+|+|.
T Consensus 372 ---~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 372 ---DTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ---CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 000 11235899999999887763 3577777753 222222223334555666664
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.1e-08 Score=108.06 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=129.4
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (737)
..|.+||.+... ...+ ..|...+.+.+|+|+ |+.|+..+. +..|.+||+..+. ...+..+..
T Consensus 182 ~~l~~~d~dg~~-~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCCCCC-cEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 378889986544 3445 467889999999999 688777653 4689999997543 223344556
Q ss_pred ceeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
.+...+|+|++..++++.+.++. |.+||+.++... .+. .+........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence 67789999966556667777665 666687765421 111 12223456799998
Q ss_pred CCcEEEEEe-CCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004679 227 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (737)
Q Consensus 227 ~~~~l~t~s-~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--- 300 (737)
++.|+..+ .++ .|++||+..+... .+. . . ...+....|+|+|++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-------------------~-~-~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNPR-RIS-------------------F-G-GGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCeE-Eee-------------------c-C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence 46666555 333 5778887654321 110 0 0 1125568899999999887653
Q ss_pred CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004679 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 301 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
..|.+||+..+.. . ....+.......|+|+++.+.+..
T Consensus 358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence 3688888765432 2 222333456778999887766544
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=8.3e-09 Score=98.08 Aligned_cols=234 Identities=14% Similarity=0.037 Sum_probs=150.0
Q ss_pred CCcccccccccccccccccceeecccC------CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccc
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELEGHQ------GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSAN 95 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~------~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~ 95 (737)
..+.+.|++++.. --.....|++-. ....++.|++.+..++++..+|.+.+-+........ .. +.|+.+
T Consensus 91 a~a~G~i~~~r~~--~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E 167 (339)
T KOG0280|consen 91 AHARGQIQLYRND--EDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFE 167 (339)
T ss_pred ccccceEEEEeec--cceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-ccccee
Confidence 4556677776621 112223333321 124567899989999999999999966655443332 45 789999
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
+.-.+|+... .+++.+|+.|+.+..||++.+... .....+-|...|.+|.-+|..+.+++||++|-.|++|
T Consensus 168 ~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~--------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 168 AWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTF--------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred eeeeecccCC-CceEEecCCCceEEEEEecCCcce--------eeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 9999999876 789999999999999999943311 1233566899999999999888999999999999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004679 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
|.|.-..+ +... ...+.|+.+.++|.....++.++.-.-.+|-+....... +
T Consensus 239 DtRnm~kP------------------------l~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~- 290 (339)
T KOG0280|consen 239 DTRNMGKP------------------------LFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--F- 290 (339)
T ss_pred ehhcccCc------------------------cccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--h-
Confidence 99965422 1111 123678888888865434444444455677776644321 0
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEE-EEEcCC
Q 004679 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVY-LMDVNH 310 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~-iwd~~~ 310 (737)
.........|.. -+..-.|......|++++. |..++ +|-.-+
T Consensus 291 ------------~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 291 ------------QIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ------------heeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 000111122222 1333445444456777665 66644 775544
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=2.5e-08 Score=96.74 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC------------CCceeEEEEecCC-
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------------TRRVKKLAVEVGN- 159 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~p~~- 159 (737)
..-|.+|.|... |.+|++|..+|.|.++.-...... .+.....++.| ...|..+.|.++.
T Consensus 25 adiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~-----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 25 ADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKG-----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hcceeeEEeecc--cceEeecCCCCeEEEeeccccccc-----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 456889999998 899999999999999975542210 01112222223 3567889998743
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCC------CCCCCccceEEEeccC-----CceeeccCCCCCccceEEEEEecCCC
Q 004679 160 PHVVWSASEDGTLRQHDFRQGSSCPPA------GSSHQECRNILLDLRC-----GAKRSLADPPKQTLSLKSCDISSTRP 228 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (737)
...++..+.|++|++|.++........ ..........+..+.. ...........|...|+++.++.+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~- 176 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK- 176 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-
Confidence 346667788999999998765432100 0000000000000000 0011112235688899999999974
Q ss_pred cEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEEEE
Q 004679 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd 307 (737)
..++++ +|=+|.+|++.-...--.+.. ++......+.. -|++..|||. ..+++-.+..|.|++-|
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVD-------IKP~nmEeLte------VITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVD-------IKPANMEELTE------VITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEE-------ccccCHHHHHH------HHhhhccCHhHccEEEEecCCCcEEEee
Confidence 555554 678999999874331111100 00000001111 3888999995 55677777899999999
Q ss_pred cCC
Q 004679 308 VNH 310 (737)
Q Consensus 308 ~~~ 310 (737)
++.
T Consensus 243 mR~ 245 (433)
T KOG1354|consen 243 MRQ 245 (433)
T ss_pred chh
Confidence 986
No 250
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=1.5e-09 Score=73.85 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=37.6
Q ss_pred ccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004679 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (737)
Q Consensus 659 ~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~ 697 (737)
|+++.+|.+|.+.|++|+|+|++.+|+|+|.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999999997
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=2.7e-09 Score=122.80 Aligned_cols=193 Identities=15% Similarity=0.206 Sum_probs=157.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
-|-..|.+|.=+|...+.+||+.||.|++|....++.+..+.......|+.+.|+.. |+.+..+..||.+.+|....
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccCC-
Confidence 345678888889988999999999999999999999888887667799999999999 79999999999999999883
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
++....+.|....+.++|-. ..+++++ .++.+.+||.......
T Consensus 2283 ----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~--------------------- 2328 (2439)
T KOG1064|consen 2283 ----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN--------------------- 2328 (2439)
T ss_pred ----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc---------------------
Confidence 45778889999999999965 4566654 5689999996544311
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004679 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
..+. ..|...++++++.|. .++|++|+.+|.|++||++..+.++.++ .
T Consensus 2329 -s~v~--~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~-- 2376 (2439)
T KOG1064|consen 2329 -SLVH--TCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A-- 2376 (2439)
T ss_pred -ceee--eecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h--
Confidence 0111 467889999999997 5899999999999999999876554431 1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
++ ...++++|+..|.++||++...+
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEccccc
Confidence 45 67789999999999999999864
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.93 E-value=4.5e-06 Score=87.99 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=119.6
Q ss_pred EEEEeCC----CcEEEEEC--CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC----CCcEEEEecCCCCCCCCCC
Q 004679 65 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 65 lasgs~d----g~V~vwd~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~----dg~I~iwd~~~~~~~~~~~ 134 (737)
++.|+.. +.|.+|++ .+++....-..........++++|+ +.+|.+... ++.|..|.+....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~---- 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGT---- 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcce----
Confidence 4455555 68888888 4444322211123455677889998 688888776 578999998863222
Q ss_pred CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC
Q 004679 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (737)
...+..........+.++++|++..++++...+|.|.++++.....+. .... ++... +. ........
T Consensus 76 --L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~-------~~~~-~~~~~-g~--g~~~~rq~ 142 (345)
T PF10282_consen 76 --LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG-------EVVQ-TVRHE-GS--GPNPDRQE 142 (345)
T ss_dssp --EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE-------EEEE-EEESE-EE--ESSTTTTS
T ss_pred --eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc-------eeee-ecccC-CC--CCcccccc
Confidence 122333433455667899999554444444468999999998743210 0000 11000 00 00011122
Q ss_pred ccceEEEEEecCCCcEEEE-EeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004679 215 TLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t-~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~ 292 (737)
.....++.|+|++ +++++ .-....|++|++..... +... ..+ .-..+..-..++|+|+++
T Consensus 143 ~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~---------------~~~--~~~~G~GPRh~~f~pdg~ 204 (345)
T PF10282_consen 143 GPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPV---------------DSI--KVPPGSGPRHLAFSPDGK 204 (345)
T ss_dssp STCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEE---------------EEE--ECSTTSSEEEEEE-TTSS
T ss_pred cccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEe---------------ecc--ccccCCCCcEEEEcCCcC
Confidence 3456789999985 55554 44557899999976541 1110 000 001122377899999999
Q ss_pred EEEEEeC-CCeEEEEEcCC
Q 004679 293 EVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 293 ~l~~g~~-dg~v~iwd~~~ 310 (737)
++++... ++.|.+|++..
T Consensus 205 ~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 205 YAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp EEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCCcEEEEeecc
Confidence 9988877 78999999884
No 253
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=2.4e-08 Score=95.47 Aligned_cols=242 Identities=12% Similarity=0.182 Sum_probs=152.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-E----EEEEcccCc------------cceEEEEEeeCCCCCEEEE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-L----LHSIETGHS------------ANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~----~~~~~~~h~------------~~V~~v~~sp~~~~~~l~s 112 (737)
...|+++.|...|.+|++|...|.|.+|.-+... + ...| ++|. ..|..+.|..++....++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4679999999999999999999999999865432 1 1223 3443 5688899988765567888
Q ss_pred EECCCcEEEEecCCCCCCCC------------------CC-----------CC---CCCceee-ccCCCceeEEEEecCC
Q 004679 113 GAGDAEVRLFNLSRFSGRGL------------------DD-----------NA---ITPSALY-QCHTRRVKKLAVEVGN 159 (737)
Q Consensus 113 gs~dg~I~iwd~~~~~~~~~------------------~~-----------~~---~~~~~~~-~~h~~~v~~l~~~p~~ 159 (737)
.+.|.+|++|.+........ .. .. ..|.+.. ..|.-.|.++.|.. +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence 88999999999876421110 00 00 0111111 45677788999987 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004679 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
...++ ...|-.|.+|++.... ....+.+++...... -..-|++..|+|...+.+.-.+..|.
T Consensus 184 ~et~l-SaDdLrINLWnl~i~D-----------~sFnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 184 KETLL-SADDLRINLWNLEIID-----------GSFNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred hheee-eccceeeeeccccccC-----------CceEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCCc
Confidence 45554 4567899999987643 223344443322221 13457888999988788888999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 317 (737)
|++-|+|....--.-. .....+..+........-...|..+.|+++|+++++-..- +|.|||+...+.+...
T Consensus 246 Ikl~DlRq~alcdn~~-----klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikT 317 (460)
T COG5170 246 IKLNDLRQSALCDNSK-----KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKT 317 (460)
T ss_pred EEehhhhhhhhccCch-----hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCcee
Confidence 9999998432100000 0000000000000000111248889999999988877655 9999999997755443
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=1.8e-06 Score=102.93 Aligned_cols=69 Identities=7% Similarity=0.009 Sum_probs=58.6
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEe-------------ecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCC
Q 004679 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML-------------LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 701 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l-------------~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~ 701 (737)
++++|+++++-+.++.|++||..++.+.... .++-....+|+++++|+++++-+.+++|++||+.++
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 7899999999999999999999988766432 122236789999999999999999999999999998
Q ss_pred CC
Q 004679 702 VP 703 (737)
Q Consensus 702 ~~ 703 (737)
+.
T Consensus 891 ~~ 892 (1057)
T PLN02919 891 EA 892 (1057)
T ss_pred cc
Confidence 76
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=1.1e-07 Score=92.54 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=131.6
Q ss_pred CCcccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEEcccCccceE
Q 004679 24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS----SRKLLHSIETGHSANVF 97 (737)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~----~~~~~~~~~~~h~~~V~ 97 (737)
.+.|.++++|-..- +....++. .-..+++++.++++...|+.|-..|++.-+.+. +...++.. ..|...|.
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~ 118 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVS 118 (404)
T ss_pred ccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhccee
Confidence 45566777766321 11122222 234689999999999999999999999988654 34444555 67889999
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC-------------------------------CCCCCCCCceeeccC
Q 004679 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCH 146 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~~h 146 (737)
.+-|+-. ...+++.+.|..+.---.+.+.+.. .......++..+.+|
T Consensus 119 ~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 119 AIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 9888876 4788888877665432222111100 011223456778899
Q ss_pred CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 147 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
.+.++++.|.+ ...+|++|..|..+.+||+...+-. .....+|...|..++.-+.
T Consensus 197 ~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~------------------------~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 197 TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT------------------------AYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcce------------------------eeeeccchhhhhhhhhhhh
Confidence 99999999999 6688999999999999999766522 1222234445555555443
Q ss_pred CCcEEEEEeCCCcEEEEECCCCC
Q 004679 227 RPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 227 ~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
-..+.+++.||.|-+|+++...
T Consensus 252 -t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 252 -TRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -heeeeeccCCCeEEEEecccee
Confidence 4688899999999999997543
No 256
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=6.6e-07 Score=84.22 Aligned_cols=213 Identities=13% Similarity=0.051 Sum_probs=139.4
Q ss_pred EEEEcC-----CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 55 ~l~~s~-----~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
.|.|-| ...+||.|+..|...+|...+.+....+...|...|+-+.=.-+. ...+..++.|.++++.++.-...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 455655 345899999999999999987665444434444433322211111 23567778899999998874322
Q ss_pred CCCCCCCCCCceeeccCCCc--eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 130 RGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.+..|... +.++++++ ++.++++.+....|..|.+.....- ... ++
T Consensus 151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~--------- 198 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY--------- 198 (344)
T ss_pred ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence 12223333 78899999 6789999999999999998765311 000 00
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
++ ..+..-.+..|+.. ...+|++..||.+.|||+|............ ..++.+.+..+.|
T Consensus 199 ~a---~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----------------rp~hnGa~R~c~F 258 (344)
T KOG4532|consen 199 EA---PTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST----------------RPHHNGAFRVCRF 258 (344)
T ss_pred ec---ccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc----------------CCCCCCceEEEEe
Confidence 11 12233467788886 4799999999999999999765332221111 2244557999999
Q ss_pred cCCCC--EEEEEeCCCeEEEEEcCCCCcceeeeec
Q 004679 288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (737)
Q Consensus 288 sp~g~--~l~~g~~dg~v~iwd~~~~~~~~~~~~~ 320 (737)
+|-|. +|+..-.-+.+.+.|+++..........
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 98664 4666666789999999998765554433
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.84 E-value=3.8e-07 Score=99.41 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=122.0
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (737)
..|.++|..... ...+ ..+...+.+.+|+|+ +++|+.+..+ ..|++||+..+. ...+..+..
T Consensus 170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 358888876444 3444 356667899999999 7888877654 479999987532 222333455
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
.+.+++|+|++..++++.+.++ .|.+||+.++... .+.. +........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence 5677899996555555666554 4888888765411 1111 1112335678997
Q ss_pred CCcEEEEEeC-CC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--
Q 004679 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (737)
Q Consensus 227 ~~~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg-- 301 (737)
+ +.|+..+. ++ .|+++|+.+++.. .+. .. ...+..+.|+|+|++|+.++.++
T Consensus 289 g-~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~------------------~~---~~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 G-KSIAFTSDRGGSPQIYMMDADGGEVR-RLT------------------FR---GGYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred C-CEEEEEECCCCCceEEEEECCCCCEE-Eee------------------cC---CCCccCeEECCCCCEEEEEEccCCc
Confidence 4 56655443 33 5777777654321 110 00 11356789999999999988876
Q ss_pred -eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 302 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
.|.+||+.++... ... ........+|+|+.+.+.+
T Consensus 346 ~~i~~~d~~~~~~~-~l~-~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 346 FNIAVMDLDGGGER-VLT-DTGLDESPSFAPNGRMILY 381 (417)
T ss_pred eEEEEEeCCCCCeE-Ecc-CCCCCCCceECCCCCEEEE
Confidence 8899998874422 221 1222334577777665544
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1.1e-06 Score=95.12 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=127.8
Q ss_pred ecccCCceEEEEEcCCCCEE---EEEeCC--CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC--
Q 004679 46 LEGHQGCVNAISWNSKGSLL---ISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA-- 117 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~l---asgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg-- 117 (737)
|......+.+=+|+|||+.+ ++...+ ..|.+.++.+++..... .........+|+|+ |+.|+..+. +|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g~~ 255 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYGNP 255 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCCCc
Confidence 44445566677999999742 244433 35777888877643322 23444556899999 677765542 23
Q ss_pred --cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
.+.+|++...... .+..............+|+|++..++++...+|...+|.+......
T Consensus 256 di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g------------ 316 (428)
T PRK01029 256 DLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG------------ 316 (428)
T ss_pred ceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc------------
Confidence 3444666532111 1122222223344678999955445555556676666654321000
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
+....+.. ....+....|+|++ +.|+..+.+ ..|.+||+.+++.....
T Consensus 317 -------~~~~~lt~---~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt------------------ 367 (428)
T PRK01029 317 -------QSPRLLTK---KYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT------------------ 367 (428)
T ss_pred -------cceEEecc---CCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc------------------
Confidence 00011111 12345677899984 666655433 46899999876532110
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004679 273 SEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
.+. ..+....|+|||++|+.... ...|++||+..++..... .........+|+|.
T Consensus 368 --~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 --TSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred --CCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 000 12566899999998876544 357899999876543333 23334556777774
No 259
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1e-06 Score=94.30 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=150.7
Q ss_pred ccccccceeecccCCceEEEEEcCCC------------CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKG------------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g------------~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
..+.+.+..+.-|+..|+.+.|.|.. -+||++.-.|.|.+||...+..+..+ ..|..++..++|-|.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence 45667788888899999999999731 26788889999999999999888888 788999999999985
Q ss_pred CC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 105 TS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 105 ~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
.+ .++|+.-..-.+|.+|+..+++. +.....-.....|+.+.|-+...+..-+..|.+.+.+.-....
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~k----------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGEK----------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCce----------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 42 24677777788999999887542 3333434456778999997777666666778888877655443
Q ss_pred CCCCCCCCCccceEEEeccCCce----------eeccCCC-CCc--cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 183 CPPAGSSHQECRNILLDLRCGAK----------RSLADPP-KQT--LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~--~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+.. .+....+....... ......+ .-. .....++|+|.-.+.+ -......+.++|++-..
T Consensus 191 p~~------pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 191 PDV------PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYEC 263 (1062)
T ss_pred CCC------CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhhc
Confidence 210 01111111000000 0000000 000 1122356788643333 34456779999998665
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--CEEEEEeCCCeEEEEEcCC
Q 004679 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g--~~l~~g~~dg~v~iwd~~~ 310 (737)
.+.....+ .. .+.-+.|-|++ ..|+....||.+.+|--+.
T Consensus 264 ~l~vvpie-------------------r~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 264 CLAVVPIE-------------------RG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEEEEec-------------------cC--CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 44433211 11 13446666654 5699999999999997665
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.7e-07 Score=96.26 Aligned_cols=66 Identities=12% Similarity=0.284 Sum_probs=57.7
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCC-----CC-eEEEEecCCcEEEEcCCCCC
Q 004679 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----DC-VVATSGIDNTIKIWTPSASV 702 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~-----~~-~l~S~~~Dg~i~lW~~~~~~ 702 (737)
++|||..+++|| +.|++||+.+++.+..|.||.++|.+++|--+ |. +|.++..+.-|.+|-+....
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 799999999987 68999999999999999999999999999887 54 66666778889999877743
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=4e-07 Score=95.00 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=140.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCC------------------CCCEEEEEECCCcE
Q 004679 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPET------------------SDELVVSGAGDAEV 119 (737)
Q Consensus 60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~------------------~~~~l~sgs~dg~I 119 (737)
|-..++|....||.+++||..+++....|.+. -.+..++..|.-.. +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999998877766321 13445555554110 12467888889999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+|++..+.- .....-..|.+.|.++.++. +-..|.+++.|+.+..|+......+
T Consensus 83 ~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~---------------- 137 (541)
T KOG4547|consen 83 LLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII---------------- 137 (541)
T ss_pred EEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee----------------
Confidence 9999986432 11223357999999999987 5678999999999999999877532
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
.........+.+++.+|+ +..+++++ +.|++||+++.+.+..|. ||.+
T Consensus 138 ---------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ft--------------------gh~s 185 (541)
T KOG4547|consen 138 ---------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFT--------------------GHGS 185 (541)
T ss_pred ---------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEec--------------------CCCc
Confidence 112233456788999998 67888886 689999999988776653 3443
Q ss_pred cceeEEEEcCC-----CCEEEEEeC-CCeEEEEEcCC
Q 004679 280 LHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 280 ~~i~~v~~sp~-----g~~l~~g~~-dg~v~iwd~~~ 310 (737)
+|+++.|--+ |.+++++.. +..+.+|-+..
T Consensus 186 -~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 186 -PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6999998876 777777655 66778887766
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.2e-08 Score=100.45 Aligned_cols=212 Identities=15% Similarity=0.196 Sum_probs=141.0
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
..|.||+..|..++--.+.+-+++++.|++|++|.+.. ..+..++ +.|+.+|.++-|..+ -..++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence 45789999999988777788899999999999999863 2255566 789999999999988 4566655 8
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEE-EEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~-s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
|-|.+||.-.+.... ........+.+..+..-+. +..++. -|+...+|+++|.+..+-. |.
T Consensus 804 ~giHlWDPFigr~La--------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---------~E 866 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLA--------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---------CE 866 (1034)
T ss_pred CcceeecccccchhH--------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---------ee
Confidence 999999976432210 0001111222333333332 334444 4478899999999987632 11
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
..+...++...-+.+++..+. +++++++-.+|+|.+.|.|+++.+..+.... |
T Consensus 867 -----------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswrpme----c----------- 919 (1034)
T KOG4190|consen 867 -----------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWRPME----C----------- 919 (1034)
T ss_pred -----------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCCccc----c-----------
Confidence 112223334456788888886 6899999999999999999988665442110 0
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCeEEE-EEcCCC
Q 004679 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL-MDVNHA 311 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i-wd~~~~ 311 (737)
....++ .|..+.|+....|..+-+ |....+
T Consensus 920 ------dllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 920 ------DLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred ------hhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 122222 355666777777778877 776654
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=3e-06 Score=90.87 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=159.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC----------CCEEEEEECCCcEE
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS----------DELVVSGAGDAEVR 120 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~----------~~~l~sgs~dg~I~ 120 (737)
..-.++.|+|.| +||-|+. ..|.|-|..+-+.++.+ ..|...|+.+.|.|... .-+|+++...|.|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 346788999876 5666654 47899999999999999 78999999999998531 12567777889999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
+||...... +..+..|.+++..+.|-+. ...+|++-....++.+|+..+|+. +
T Consensus 93 l~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--------------~ 148 (1062)
T KOG1912|consen 93 LVDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--------------F 148 (1062)
T ss_pred EEEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------e
Confidence 999986432 4456678888999998762 235676767778999999998873 2
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC----CcccccCCCC---CCCCccccccc
Q 004679 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP----PLTSCQKRMS---PPPCVNYFCPM 270 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~----~~~~~~~~~~---~~~~~~~~~~~ 270 (737)
|.... ....+.|+.+.|.+.+.+..-+..|.+.+-+.-..+ +.+.++...+ +....+.....
T Consensus 149 Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ 217 (1062)
T KOG1912|consen 149 WKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG 217 (1062)
T ss_pred ecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence 33222 224566788888888888888888888777653222 1111111100 00000000000
Q ss_pred cc-cCCCCcc---cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCc
Q 004679 271 HL-SEHGRSS---LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (737)
Q Consensus 271 ~~-~~~~~~~---~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 336 (737)
.. ....... .....++|+|.-+.++-...-..+.++|++-........-.......+.+-|+.+..
T Consensus 218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence 00 0000000 013346789987777777777899999998866655555555666677777775543
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=4.6e-06 Score=86.25 Aligned_cols=219 Identities=11% Similarity=0.133 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-----------CCcEEE
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRL 121 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----------dg~I~i 121 (737)
=+-+.|||-|.+|+|-..- -|.+|--..-..++.| .| ..|.-+.|||. ..+|++=+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF--YH-PGVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc--cC-CCceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence 3568999999999999876 4789987666666666 35 45889999999 699998653 257999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
||++++..... ...++.....-.-+.|+. +.+++|.-.. .+|.+|+.....+. +.+
T Consensus 287 WDI~tG~lkrs-------F~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~ll---------------d~K 342 (698)
T KOG2314|consen 287 WDIATGLLKRS-------FPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLL---------------DKK 342 (698)
T ss_pred EEccccchhcc-------eeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeee---------------ccc
Confidence 99998643211 111111111123468888 5588876665 57999986654321 111
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEe-----CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004679 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
......|....|+|. +++||-=. .-..+.+..+.+++.+.+. + +
T Consensus 343 ----------slki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~----------n------l---- 391 (698)
T KOG2314|consen 343 ----------SLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTK----------N------L---- 391 (698)
T ss_pred ----------ccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeec----------c------c----
Confidence 112346777889996 35554221 1123334444333322111 0 0
Q ss_pred CcccceeE--EEEcCCCCEEEEEeC----------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004679 277 RSSLHLTH--VTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 277 ~~~~~i~~--v~~sp~g~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
+ .|.. +-|-.+|.+|..-.. -..+.||.++....+.......+.+-..+|.|.++.
T Consensus 392 f---nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 392 F---NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred e---eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 0 1222 456678888766433 124678888776666666666677777777776543
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2e-07 Score=87.35 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=107.7
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEEeeCCCCCEEEEEE-----
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGA----- 114 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----- 114 (737)
.+.+.+..|+++=.+=+.+--++.++++..||.+.+.+.+.-. ....+...|.+ -.+.+.... ++.+.++.
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGNWN 156 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcceEe
Confidence 3344444455443333333346779999999999999987521 11111111111 112222222 34444432
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.-+..++|+++..... ....+ -...|++++-+|...+++++|+.||.+.+||.+....+
T Consensus 157 ~~d~~~a~~~~p~~t~---------~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------- 215 (319)
T KOG4714|consen 157 AQDNFYANTLDPIKTL---------IPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------- 215 (319)
T ss_pred eccceeeecccccccc---------ccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence 1234566666542211 11111 22348999999977788999999999999999987533
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
......|+.+++.+-|+|.++..|++++.||.+..||..+
T Consensus 216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4445567889999999999999999999999999999874
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.5e-06 Score=93.25 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=119.8
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
.|.++|.+.+.. ..+ ..+...+...+|+|+ |+.|+..+.+ ..|.+|++..+.. ..+......
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 477888876543 344 356778999999999 6887766543 3588889875432 122222334
Q ss_pred eeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004679 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
+....|+|++..++++...++ .|.+||+.++... .+.. +........|+|++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spDg 298 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKDG 298 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCCC
Confidence 556899996545555666665 5777788765421 1111 11233456899985
Q ss_pred CcEEEEEeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-C--e
Q 004679 228 PHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--H 302 (737)
Q Consensus 228 ~~~l~t~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~ 302 (737)
..++++...++ .|+++|+.+++.. .+. + .+. ......|+|+|++|+....+ + .
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt-----------~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAE-RVT-----------F-------VGN---YNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE-Eee-----------c-------CCC---CccceEECCCCCEEEEEEccCCceE
Confidence 33444443444 5667777655421 110 0 000 13346899999999887753 3 5
Q ss_pred EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004679 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 303 v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
|.+||+.+++..... .........|+|+++.+.+..
T Consensus 357 l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 357 VAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEE
Confidence 889999886533222 222233457888776665543
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=2.9e-05 Score=77.05 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=170.5
Q ss_pred ccccccccccccccccc-eeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEE--EEEcccCccceEE
Q 004679 27 NHSLQMHSSLVRRLSQE-RELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLL--HSIETGHSANVFC 98 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~--~~~~--~~~~~~h~~~V~~ 98 (737)
.+.|..|+...++.+.. ..+-.+.+.++-|+|+|+++.|.++-. +|.|.-|.++. |+.. ... .....+-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeE
Confidence 45566666443333222 223346778899999999998888754 57788887764 4432 222 223344589
Q ss_pred EEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc----------eeEEEEecCCCcEEEEEe
Q 004679 99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~l~s~s 167 (737)
++++++ +++|+++.. -|.|.++-++.. +.. .....+..|.+. +....+.| ++++++++.
T Consensus 94 vsvd~~--g~~vf~AnY~~g~v~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~D 163 (346)
T COG2706 94 VSVDED--GRFVFVANYHSGSVSVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPD 163 (346)
T ss_pred EEECCC--CCEEEEEEccCceEEEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEee
Confidence 999999 788888876 589999998763 221 112222235444 88899999 456666654
Q ss_pred C-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 168 E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 168 ~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
. --.|.+|++..+...... .... ........|.|+|+..-..+++--+++|-+|...
T Consensus 164 LG~Dri~~y~~~dg~L~~~~---------------------~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPAD---------------------PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cCCceEEEEEcccCcccccc---------------------cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 3 246999999976533110 0000 1223457899999854344556678999999988
Q ss_pred CC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeee----ec
Q 004679 247 ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY----TV 320 (737)
Q Consensus 247 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~----~~ 320 (737)
.. ..+..++.....+ ..| ....+...+.++|||++|+++.. ...|-+|.+........+. ..
T Consensus 222 ~~~g~~~~lQ~i~tlP---~dF---------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 222 PAVGKFEELQTIDTLP---EDF---------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred CCCceEEEeeeeccCc---ccc---------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 64 2222222111000 001 12225778999999999999977 5589999887754333322 23
Q ss_pred CCCCeeeeeccCCCCccCCCCCCCcc
Q 004679 321 GDASKIMSFTPTLNGLELQPPIHDFL 346 (737)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~ 346 (737)
+..++.+.|+|..+-+....+.+..+
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcE
Confidence 56688889999887776665554443
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=1.2e-05 Score=96.15 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=131.9
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cC------------ccceEEEEEeeCCCCCEE-EEEECCCc
Q 004679 54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELV-VSGAGDAE 118 (737)
Q Consensus 54 ~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~h------------~~~V~~v~~sp~~~~~~l-~sgs~dg~ 118 (737)
..+++++ ++.++++-+.++.|++||... ..+..+-. +. -.....+++.++ ++.| ++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 3678887 466777778889999999864 44433311 11 123578999988 4654 44455688
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004679 119 VRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~ 191 (737)
|+.+|+............ .......+ .-.....++++|.++.++++.+.++.|.+||...+........+..
T Consensus 648 Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 999987642211000000 00000000 0123467999997777888888889999999876542100000000
Q ss_pred ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004679 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
. ...+.. ...........++|+|++..++++-+.++.|++||+.++............+.....+....
T Consensus 727 ~-------~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 727 R-------NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred c-------cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 0 000000 00011234678999998544677777789999999986542110000000000000000000
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.............++++++|..+++-..++.|++||..++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 0000000012457999999998888888999999998874
No 269
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.7e-07 Score=91.83 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=182.9
Q ss_pred CCCCCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEE
Q 004679 21 DTRPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFC 98 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~ 98 (737)
-++.+.++.+++|...- ...+.++.++.|.+.|.+++.+-++-+++|.+. |..++++|+++-..+.-+... .....
T Consensus 23 iiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~--~lPg~ 100 (558)
T KOG0882|consen 23 IIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV--DLPGF 100 (558)
T ss_pred EEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--cCCCc
Confidence 34577888999998544 667888899999999999999999999999777 999999999875544222111 11112
Q ss_pred EEEeeCCCC---CEEE-EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004679 99 TKFVPETSD---ELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (737)
Q Consensus 99 v~~sp~~~~---~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v 174 (737)
+.|.... | ..++ +.-.++.+.++|-..... +.....+-|..+|.++.+.+ .+..+++....|.|..
T Consensus 101 a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 101 AEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEY 170 (558)
T ss_pred eEEecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEe
Confidence 2233221 2 2333 334579999999875332 22445567999999999999 5577878888899999
Q ss_pred EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004679 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
|.....-..+ .....|.++.. ..+...+.......++.|+|+ +..+.+-+.|..|++++.++++.++.+
T Consensus 171 Ws~e~~~qfP--------r~~l~~~~K~e--TdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 171 WSAEGPFQFP--------RTNLNFELKHE--TDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ecCCCcccCc--------ccccccccccc--chhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhh
Confidence 9987421110 00111111111 112333445567789999998 588999999999999999999977766
Q ss_pred cCCCCCCCCcc--cccccccc----------CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004679 255 QKRMSPPPCVN--YFCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (737)
Q Consensus 255 ~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 322 (737)
.....-..+.. .+...+.. ...+....-+.++|...|++|+-|+.= .|++.++.++. ....++..+
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~-v~ri~gk~e 317 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNT-VVRILGKDE 317 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCe-EEEEeccch
Confidence 43221111000 00000100 011223345678899999999999876 58899999854 555566555
Q ss_pred CCeeee
Q 004679 323 ASKIMS 328 (737)
Q Consensus 323 ~~~~~~ 328 (737)
.++...
T Consensus 318 ~ir~~~ 323 (558)
T KOG0882|consen 318 AIRFTR 323 (558)
T ss_pred hhhhhh
Confidence 544443
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.65 E-value=9e-06 Score=85.72 Aligned_cols=251 Identities=12% Similarity=0.091 Sum_probs=148.7
Q ss_pred CceEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEE
Q 004679 51 GCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRL 121 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~----dg~V~vwd~~~~--~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~i 121 (737)
.....|+++|++++|.+... ++.|..|++... + .+... .........++++|+ +.+|+++.. +|.|.+
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRFLYVANYGGGSVSV 113 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSEEEEEETTTTEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCEEEEEEccCCeEEE
Confidence 45567999999999988876 578999988764 3 33333 224455678999999 688777764 899999
Q ss_pred EecCCCCCCCCCCCCCCCceee----------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004679 122 FNLSRFSGRGLDDNAITPSALY----------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~ 191 (737)
+++... +... .....+ ..-.....++.|+|++..++++.-....|.+|++......
T Consensus 114 ~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-------- 179 (345)
T PF10282_consen 114 FPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-------- 179 (345)
T ss_dssp EEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T--------
T ss_pred EEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce--------
Confidence 999863 1110 001111 1123457899999955444444444468999999776411
Q ss_pred ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccc
Q 004679 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPM 270 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (737)
.... ..+. . ........+.|+|++...+++.-.++.|.+|++.... .+.... .....
T Consensus 180 --l~~~--------~~~~-~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~----------~~~~~ 237 (345)
T PF10282_consen 180 --LTPV--------DSIK-V-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ----------TISTL 237 (345)
T ss_dssp --EEEE--------EEEE-C-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE----------EEESC
T ss_pred --EEEe--------eccc-c-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE----------Eeeec
Confidence 0000 0011 1 1234568899999865566667778999999988221 111110 00000
Q ss_pred cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC--CCcce--eeeecCCCCeeeeeccCCCCccCCCCC
Q 004679 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRA--MRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~--~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
.....+. .....++++|||++|+++.. .+.|.+|++.. +.... .....+..++.++++|+.+.+....+.
T Consensus 238 ~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 238 PEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred ccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 0000111 14778999999999999876 67999999943 22211 222236678999999988776655443
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=3e-06 Score=92.43 Aligned_cols=200 Identities=8% Similarity=0.058 Sum_probs=114.0
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
.|.++|.+.... ..+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+..+... .+..+ ...
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSF---PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EecCC---CCC
Confidence 577778766543 334 356778999999999 677776543 33 5888888753321 12222 223
Q ss_pred eeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004679 150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
.....|+|++..++++.+.++. |.++|+.+++.. .+.. +.......+|+|++
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpDG 317 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPDG 317 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCCC
Confidence 3468999966556666677775 666777665411 1111 12234567899985
Q ss_pred CcEEEE-EeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC--
Q 004679 228 PHLLLV-GGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 301 (737)
Q Consensus 228 ~~~l~t-~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg-- 301 (737)
+.|+. +..++ .|.++|+.+++... +. + .+. .....+|+|||++|+..+. ++
T Consensus 318 -~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-----------~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 318 -KSLIFTSERGGKPQIYRVNLASGKVSR-LT-----------F-------EGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred -CEEEEEECCCCCceEEEEECCCCCEEE-Ee-----------c-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 55544 43344 46666776544211 10 0 011 1334689999999888766 34
Q ss_pred eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 302 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
.|.++|+.++...... .........|+|+.+.+.+
T Consensus 375 ~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 375 NIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIY 409 (448)
T ss_pred EEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEE
Confidence 4666787775432221 1222233468887766554
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=110.12 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=134.4
Q ss_pred CCcccccccccccccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004679 24 PDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
++.++.+++|. -....++..++ +-...|+.+.|+.+|+.+..+..||.+.+|.... +..... +.|.....+..|-
T Consensus 2226 gs~dgsv~~~~--w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~-qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2226 GSQDGSVRMFE--WGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSW-QCHNKALSDFRFI 2301 (2439)
T ss_pred cCCCceEEEEe--ccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-cceecc-ccCCccccceeee
Confidence 45567777777 33344455554 2237899999999999999999999999999873 344444 6788888888887
Q ss_pred eCCCCCEEEEEE---CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 103 PETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 103 p~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
. ..+++++ .++.+.+||........ .+. ..|.+.++++++-| ..++|++|+.+|.|++||++.
T Consensus 2302 ~----s~~~tag~s~d~~n~~lwDtl~~~~~s-------~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2302 G----SLLATAGRSSDNRNVCLWDTLLPPMNS-------LVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred e----hhhhccccCCCCCcccchhcccCcccc-------eee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH
Confidence 5 4666664 47889999987543321 133 78999999999999 668999999999999999998
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (737)
.+.. |..+. +. . ..+|++|+..|.|+||++.....+..++..
T Consensus 2368 rql~------------------------------h~~~~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2368 RQLR------------------------------HTFQA----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred HHHH------------------------------HHhhh----hh-h-hheeeccCcccceEEEEccccchhhcCchh
Confidence 7643 11111 33 2 469999999999999999988777666543
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=6.6e-07 Score=89.23 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
.+..+..++.+++||.+..+....++++..... +... .-...-+.+.|..+ ......+..-|.++-+|+-..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence 344456778899999998888877777754432 2222 12223344455544 244444444444444444331
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.. .+...+.+|-+.++.++|+| ++++++++..|..|++-.......+
T Consensus 140 ~~--------~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I------------------------ 186 (390)
T KOG3914|consen 140 DS--------GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI------------------------ 186 (390)
T ss_pred cc--------cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch------------------------
Confidence 11 11345678999999999999 5588889999999999776554321
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004679 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
-....+|+..|..++.-++ +.|++++.|++|++||+++++.+.++.
T Consensus 187 esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 1223468889999999884 679999999999999999999776653
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=0.00011 Score=73.03 Aligned_cols=201 Identities=15% Similarity=0.171 Sum_probs=122.1
Q ss_pred CCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeecc
Q 004679 71 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (737)
Q Consensus 71 dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 145 (737)
+.-|.+|++.+. +........+...++-++|+|+ .+.|.++-. +|.|..|.+...++.. ..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence 577999998842 2211111356788899999999 678877755 4778888887543332 11111111
Q ss_pred CCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004679 146 HTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (737)
Q Consensus 146 h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (737)
-..+.+.+++++ ++++++++.. -|.|.++-++..-.+.. ....+.....+... ......+....|.
T Consensus 87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~-------~v~~~~h~g~~p~~-----rQ~~~h~H~a~~t 153 (346)
T COG2706 87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQP-------VVQVVKHTGSGPHE-----RQESPHVHSANFT 153 (346)
T ss_pred CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCcccc-------ceeeeecCCCCCCc-----cccCCccceeeeC
Confidence 223348899999 5566666655 58899999876432210 00111111100000 0111236778899
Q ss_pred cCCCcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCe
Q 004679 225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH 302 (737)
Q Consensus 225 p~~~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~ 302 (737)
|+ +++|++.. .-.+|.+|++..++....-. ..+ ..+..-+.|+|+|++++.++.++ +++
T Consensus 154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------------~~v----~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTPADP--------------AEV----KPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CC-CCEEEEeecCCceEEEEEcccCccccccc--------------ccc----CCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 98 46766665 34579999998665332211 111 11223667999999999999998 999
Q ss_pred EEEEEcCCC
Q 004679 303 VYLMDVNHA 311 (737)
Q Consensus 303 v~iwd~~~~ 311 (737)
|.+|.....
T Consensus 215 V~v~~y~~~ 223 (346)
T COG2706 215 VDVLEYNPA 223 (346)
T ss_pred EEEEEEcCC
Confidence 999999884
No 275
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=2.9e-05 Score=74.72 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=137.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEE--EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004679 56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 56 l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
++.+.+|++||.- .|..|.|-..... ..+. .+.+.....-.-++|+|+ +.+||.+...|+|++||+.....-.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence 5677899988876 4557777654432 1222 222333345678999999 7999999999999999997422111
Q ss_pred CCCCCCCCceeec-cCCCceeEEEEecCC-----CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 132 LDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 132 ~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
+.+..... .-...|..+.|.+.. ...|++-..+|.++-|-+..+.... . ...
T Consensus 80 -----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y------------~e~ 137 (282)
T PF15492_consen 80 -----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----Y------------QEN 137 (282)
T ss_pred -----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----c------------eee
Confidence 11111111 123556677675422 2245566777888877764332110 0 001
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCC-----------CcEEEEECCCCCCcccccCCCCCCC-------Ccccc
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPPP-------CVNYF 267 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~ 267 (737)
..+.........|.++.++|.. ++|++|+.. .-+..|.+-+..+........+... +...+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 1222333456789999999975 677666532 1367787776665544322221111 11111
Q ss_pred ccccc-cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004679 268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 268 ~~~~~-~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
....+ ...+.....|..|..||||..|++...+|.|.+|++.+....
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 11111 112333446999999999999999999999999999986543
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1e-07 Score=64.65 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.3
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd 78 (737)
+++.+|++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=4.8e-08 Score=105.41 Aligned_cols=230 Identities=16% Similarity=0.194 Sum_probs=152.5
Q ss_pred hhhhhccccCCCCC-cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004679 12 YDMLDTRHTDTRPD-VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET 90 (737)
Q Consensus 12 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~ 90 (737)
...|..+++.+..+ ..+...=......+++..++|+.|+..-+|++|+-+.++|+.|+..|.|+++++.+|...... .
T Consensus 1062 t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-n 1140 (1516)
T KOG1832|consen 1062 TGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-N 1140 (1516)
T ss_pred hhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-c
Confidence 33444555544422 333333334567789999999999999999999999999999999999999999999988888 8
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECC-C-cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004679 91 GHSANVFCTKFVPETSDELVVSGAGD-A-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~d-g-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
.|.++|+.+.-+-+ |..+++.+.- . -..+|++...- .+.+++. .-.++.|+.. ...-+.|..
T Consensus 1141 cH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~~---------~~~Hsf~----ed~~vkFsn~-~q~r~~gt~ 1204 (1516)
T KOG1832|consen 1141 CHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASSTG---------GPRHSFD----EDKAVKFSNS-LQFRALGTE 1204 (1516)
T ss_pred ccccccccccccCC--cceeeeeccccCchHHHhcccccc---------Ccccccc----ccceeehhhh-HHHHHhccc
Confidence 99999999998888 5665555433 2 47789987521 1233333 3467888763 333334555
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
-....+||+.++.+....... .......-++..|+|++ .+++ .|| .+||.|..
T Consensus 1205 ~d~a~~YDvqT~~~l~tylt~---------------------~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1205 ADDALLYDVQTCSPLQTYLTD---------------------TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccceEEEecccCcHHHHhcCc---------------------chhhhhhccccccCCCc-ceEe---eCc--eeeeeccH
Confidence 567899999998644111100 00111222677899975 4443 244 37999977
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+.++.+.. .. . -..=.|+|.|..+++.+ .|||+++.+
T Consensus 1258 ~aIh~FD~-------------ft--~-------~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1258 EAIHRFDQ-------------FT--D-------YGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred HHHhhhhh-------------he--e-------cccccccCCCceEEeec-----hhhhhHHHH
Confidence 65544421 00 0 11125999999998876 589999865
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=2.5e-07 Score=98.26 Aligned_cols=162 Identities=16% Similarity=0.286 Sum_probs=122.8
Q ss_pred eEEEEEcCCC--CEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 53 VNAISWNSKG--SLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 53 V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
|-...|+|.. .+-+.......-.+|++... ..+.-++.+|...|+.+-|+|.. ...+++++.|..+..||++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCC
Confidence 5667788753 33333334456678998643 33444447999999999999987 8899999999999999999754
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
.++..+.........++|+..+++.+++ +..+.|.+||++.+..+ +
T Consensus 149 ---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------l 194 (1081)
T KOG0309|consen 149 ---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------L 194 (1081)
T ss_pred ---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------e
Confidence 3456666666677889999988888854 55678999999988643 3
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
...++|...++.++|+......+.+++.|++|+.||.....
T Consensus 195 ~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 195 CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 33445777889999988767789999999999999987543
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=3.8e-07 Score=85.52 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=83.1
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 56 l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
.++...+++|.++.. -+..+.|+++..+....- ..-...|.+++-+|.. ..++++|+.||.+.+||.+...
T Consensus 138 ~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~-- 213 (319)
T KOG4714|consen 138 RKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA-- 213 (319)
T ss_pred cceeecccEEecCCcceEeeccceeeeccccccccccc-ccccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc--
Confidence 334445666665532 234556666544332221 1122449999999985 6778889999999999999753
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
.|...++.|..++..+.|+|.++..|++++.||.+..||..+
T Consensus 214 -------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 -------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 346778899999999999999999999999999999999875
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.4e-06 Score=84.76 Aligned_cols=217 Identities=11% Similarity=0.117 Sum_probs=136.6
Q ss_pred cCCceEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEeeCCCCCEEEEEE--
Q 004679 49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA-- 114 (737)
Q Consensus 49 H~~~V~~l~~s~~g--~~las-----gs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-- 114 (737)
|...|+.+.+||.+ ..+|+ ++.-..|+||.+..... .++| ....=..+.|++.+ ..+|+..+
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~g-t~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLG-TALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCC-ceEEEEEEEe
Confidence 57789999999864 35553 45667899998863221 1222 12223457788874 23333332
Q ss_pred CCC---------cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCC
Q 004679 115 GDA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP 184 (737)
Q Consensus 115 ~dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~s~Dg~I~vwdl~~~~~~~ 184 (737)
-|. ++++.++.... ....+ .-.++|+++.|+|.+..+.++ |..--.+.+||++..-
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~s----------~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--- 305 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGES----------VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--- 305 (566)
T ss_pred ecCCCccccccceEEEEEecCce----------EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---
Confidence 233 47777776211 12222 347899999999955444333 4456789999988642
Q ss_pred CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCC
Q 004679 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP 261 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~ 261 (737)
+.++ .+++-+++-|+|. +++++.++.+ |.|-|||+.+.+.+..+...
T Consensus 306 ------------v~df-------------~egpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---- 355 (566)
T KOG2315|consen 306 ------------VFDF-------------PEGPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---- 355 (566)
T ss_pred ------------eEeC-------------CCCCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhccccccC----
Confidence 1221 1345578889997 5787777765 88999999987766554211
Q ss_pred CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004679 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (737)
.-+-+.|+|||+++++++. |+.++||++.-...-...+.. ....++|-|-..
T Consensus 356 -------------------~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~~~ 413 (566)
T KOG2315|consen 356 -------------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPFND 413 (566)
T ss_pred -------------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeecCC
Confidence 2566899999999999976 789999998763322222221 345566666544
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.51 E-value=1.2e-05 Score=75.89 Aligned_cols=244 Identities=11% Similarity=0.001 Sum_probs=152.3
Q ss_pred cccCCCCCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCc--c
Q 004679 18 RHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHS--A 94 (737)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~--~ 94 (737)
.-+..-++..+.+.+|....+. ...+....|...|+-+.=..+ .-.+..++.|.++++.+++.+...... |. -
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNL 159 (344)
T ss_pred ccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---ecccc
Confidence 3334445555666666633222 112222233333322211112 234677888999999988765433322 32 3
Q ss_pred ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce-eeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004679 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
.+.+++++++ +.++++.+....|..|.+....... +. .....++.-.+..|+. ....+|+++.||++.
T Consensus 160 ~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 160 TQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------ENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCA 228 (344)
T ss_pred ceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------eeeEecccCCCceeeeecc-CcceEEEEecCCcEE
Confidence 3889999999 7999999999999999998643221 22 2333455567888988 557899999999999
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC-cEEEEEeCCCcEEEEECCCCCCcc
Q 004679 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (737)
+||++....+.. ..-...+.|.+.+..+.|++.+. .+|+..-.-+.+.+.|+|++....
T Consensus 229 I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 229 IYDVRNMATPMA--------------------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred EEEecccccchh--------------------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 999998764310 11223345889999999997542 255555556899999999987554
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+..... . ...|....|..-.|+.++.-+.+.+++ .+.=|++.+
T Consensus 289 ~I~i~~d-----------~--~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 289 VIVIPDD-----------V--ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCcc-----------c--cccccccccccccccCCCcccccccch-hhheeeccc
Confidence 4321110 0 112223347778888888878777776 555666665
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=5.9e-05 Score=77.82 Aligned_cols=251 Identities=10% Similarity=0.112 Sum_probs=140.7
Q ss_pred CCCCcccccccccccccccccceeeccc-------CCceEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEcccC
Q 004679 22 TRPDVNHSLQMHSSLVRRLSQERELEGH-------QGCVNAISWNSKGSLLISGS-D-DTHINVWSYSSRKLLHSIETGH 92 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H-------~~~V~~l~~s~~g~~lasgs-~-dg~V~vwd~~~~~~~~~~~~~h 92 (737)
.++.-+..|.++| ..+++.+.++.-- ......++++|||++|+... . +..|.|.|+.+++.+..+..
T Consensus 71 ~~G~~~d~V~v~D--~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-- 146 (352)
T TIGR02658 71 ARGKRTDYVEVID--PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-- 146 (352)
T ss_pred ccCCCCCEEEEEE--CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--
Confidence 3344667899999 6666677666521 12234789999999988775 3 78999999999999988832
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE-EEEecCCCcEEEEEeCCCc
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~ 171 (737)
.....-...++. ..+ .-+.||......+........ .....+.....++.. -.|.+.++.+++.... |+
T Consensus 147 p~~~~vy~t~e~---~~~-~~~~Dg~~~~v~~d~~g~~~~-----~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~ 216 (352)
T TIGR02658 147 PDCYHIFPTAND---TFF-MHCRDGSLAKVGYGTKGNPKI-----KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK 216 (352)
T ss_pred CCCcEEEEecCC---ccE-EEeecCceEEEEecCCCceEE-----eeeeeecCCccccccCCceEcCCCcEEEEecC-Ce
Confidence 111111222222 222 333455555544432111000 001111110011100 0345535566666555 99
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe---------CCCcEEE
Q 004679 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---------SDAFARL 242 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s---------~Dg~i~i 242 (737)
|.+.|+....... ...+....... ....-......-++++|++..+++... ..+.|.+
T Consensus 217 V~~id~~~~~~~~----------~~~~~~~~~~~---~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 217 IFQIDLSSGDAKF----------LPAIEAFTEAE---KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred EEEEecCCCccee----------cceeeeccccc---cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 9999976654220 00011000000 000012233445999998544444232 2257999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeec
Q 004679 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTV 320 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~ 320 (737)
+|..+++.+..+... ..+..++++||++ +|++... ++.|.++|..+++........
T Consensus 284 iD~~t~kvi~~i~vG----------------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v 341 (352)
T TIGR02658 284 VDAKTGKRLRKIELG----------------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL 341 (352)
T ss_pred EECCCCeEEEEEeCC----------------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence 999998876655321 1488899999999 8887774 788999999997765555343
Q ss_pred C
Q 004679 321 G 321 (737)
Q Consensus 321 ~ 321 (737)
+
T Consensus 342 g 342 (352)
T TIGR02658 342 G 342 (352)
T ss_pred C
Confidence 3
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.6e-07 Score=93.76 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=122.5
Q ss_pred EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004679 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (737)
Q Consensus 85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 164 (737)
++.+ .+|+..|..++--.+ .+-+++++.|.+|++|.++.... +.....+..++..|+.+|.++.|-. +-++++
T Consensus 728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD---~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~ 800 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGD---EIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA 800 (1034)
T ss_pred eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccC---ccccceeeeEhhhccCcccceeeee-ccceee
Confidence 4455 689999988876666 58899999999999999985211 1122235678889999999999987 435664
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd 244 (737)
+.||.|++||.--+++..... +..+. +..+.|.++.- -+..-+++.++...+|+++|
T Consensus 801 --ScD~giHlWDPFigr~Laq~~----------dapk~----------~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 801 --SCDGGIHLWDPFIGRLLAQME----------DAPKE----------GAGGNIKCLEN-VDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred --eccCcceeecccccchhHhhh----------cCccc----------CCCceeEeccc-Ccchheeeeccchhhheeee
Confidence 558999999976665431111 11110 01112222211 12233455558899999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004679 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
.|...-..++..-. .......+.+++..|.|++++++-..|+|.+.|.++++.
T Consensus 858 aRsce~~~E~kVcn----------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCN----------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred cccccceeeEEecc----------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 99876443332110 011122488999999999999999999999999999864
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=2.1e-07 Score=92.70 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=78.1
Q ss_pred EEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEee-cCCCceEEEEecCCCCeEEEEecCCcEEEE
Q 004679 618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696 (737)
Q Consensus 618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~-gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW 696 (737)
...||..-++++. +|||+++|.|+..|..|+|=.+..--.+..|- ||+..|..++.-++.. |+|||.|++||+|
T Consensus 146 ~~lGhvSml~dVa----vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 146 PILGHVSMLLDVA----VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLW 220 (390)
T ss_pred hhhhhhhhhheee----ecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEE
Confidence 5779999999988 99999999999999999999999888887775 8999999999998865 8899999999999
Q ss_pred cCCCCCCccccC
Q 004679 697 TPSASVPSIVSG 708 (737)
Q Consensus 697 ~~~~~~~~~~~~ 708 (737)
|+.+++.+++..
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999997654
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.47 E-value=0.00016 Score=77.59 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
.+..++.++.++.|.-+|..+|+.+..+ ............ + +..++.++.++.+..+|..+++. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG~~----------~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRV-DLDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDGKE----------L 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeee-cCCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 4668888889999999999999988776 222221112222 2 46788888999999999876432 1
Q ss_pred eeeccCCCceeE-EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004679 141 ALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (737)
Q Consensus 141 ~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (737)
.... ....+.+ .... + ..++.++.++.+..||.++++.+ |........ . .... ..
T Consensus 129 W~~~-~~~~~~~~p~v~--~-~~v~v~~~~g~l~a~d~~tG~~~--------------W~~~~~~~~-~-~~~~----~~ 184 (377)
T TIGR03300 129 WRAK-LSSEVLSPPLVA--N-GLVVVRTNDGRLTALDAATGERL--------------WTYSRVTPA-L-TLRG----SA 184 (377)
T ss_pred eeec-cCceeecCCEEE--C-CEEEEECCCCeEEEEEcCCCcee--------------eEEccCCCc-e-eecC----CC
Confidence 1111 1111211 1121 3 35666778999999999988632 222111100 0 0000 00
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEE
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLS 297 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g 297 (737)
+.... + ..++.+..++.+..+|+++++.+........... ........+.-+| .+..++++
T Consensus 185 sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~--------------~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 185 SPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR--------------TELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred CCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCC--------------CchhhhhccCCccEEECCEEEEE
Confidence 11111 1 3677888889999999988875433211000000 0000000010111 35678888
Q ss_pred eCCCeEEEEEcCCCC
Q 004679 298 YSGEHVYLMDVNHAG 312 (737)
Q Consensus 298 ~~dg~v~iwd~~~~~ 312 (737)
+.+|.++.||..+++
T Consensus 248 ~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 248 SYQGRVAALDLRSGR 262 (377)
T ss_pred EcCCEEEEEECCCCc
Confidence 889999999988753
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.45 E-value=4e-05 Score=73.83 Aligned_cols=198 Identities=12% Similarity=0.105 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc------CccceEEEEEeeCCC----CCEEEEEECCCcEEEE
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETS----DELVVSGAGDAEVRLF 122 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~------h~~~V~~v~~sp~~~----~~~l~sgs~dg~I~iw 122 (737)
=.-++||||+.+||.+...|+|+++|+.... +..+... -...|..+.|.+... ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999999999999999999997643 3344222 235677777776420 1246666788888888
Q ss_pred ecCCCCCCCCCCCCCCCcee--ecc-CCCceeEEEEecCCCcEEEEEeC-CC----------cEEEEEcCCCCCCCCCCC
Q 004679 123 NLSRFSGRGLDDNAITPSAL--YQC-HTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPAGS 188 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~--~~~-h~~~v~~l~~~p~~~~~l~s~s~-Dg----------~I~vwdl~~~~~~~~~~~ 188 (737)
-+..++.+. +..... +.. +...|.++.++|.. ++|+.|+. .. .+..|.+-.+.+--....
T Consensus 125 ~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 125 LVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred EEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 764322111 122222 222 46789999999955 55555542 22 356676655543211000
Q ss_pred CCCccc------eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004679 189 SHQECR------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
...+.. ..++.+. ..............|..|..+|+ +.+||+...+|.|.+|++.+.+....+.....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~--~~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIP--SFKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred ccCccccccccccceeecc--ceeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 000000 0111111 00011111234568999999997 689999999999999999998877776544433
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=0.00014 Score=78.10 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=107.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
++..++.++.++.|..+|..+|+.+.... . ...+.+.-... +..++.++.++.|..||..+++. +
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~-~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK-L-SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec-c-CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence 45678888899999999999999887762 2 22232211111 35677778899999999986432 1
Q ss_pred eeeccCCCce-----eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004679 141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (737)
Q Consensus 141 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (737)
..+......+ .+.... + ..++.+..++.+..+|+++++.. |............. ...
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~--------------W~~~~~~~~g~~~~-~~~ 230 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPL--------------WEQRVALPKGRTEL-ERL 230 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeeccccCCCCCch-hhh
Confidence 1111111100 111121 2 35667888899999999887632 21110000000000 000
Q ss_pred cceE-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE
Q 004679 216 LSLK-SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (737)
Q Consensus 216 ~~v~-~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l 294 (737)
..+. ...+. +..+++++.+|.++.||..+++.+..... . ...... ..+..+
T Consensus 231 ~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---------------------~--~~~~p~--~~~~~v 282 (377)
T TIGR03300 231 VDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA---------------------S--SYQGPA--VDDNRL 282 (377)
T ss_pred hccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc---------------------C--CccCce--EeCCEE
Confidence 0000 01111 24777888899999999988764432210 0 011112 256778
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 004679 295 LLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 295 ~~g~~dg~v~iwd~~~~~ 312 (737)
++++.+|.|+.+|..+++
T Consensus 283 yv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 888899999999988753
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=84.97 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=115.7
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004679 57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 57 ~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 134 (737)
+|+-+ |.. ++.+.+-.|-+-|+++|.. +.| ...+.|.++.|.-. ++++..|+.+|.|...|++......
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~--- 288 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGN--- 288 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCC---
Confidence 66643 334 5566677899999988743 344 26778999999987 6999999999999999999752211
Q ss_pred CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC
Q 004679 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (737)
..+...+ -|.+.|+++..-.....+|++.+.+|+|++||++..+... .+....+|
T Consensus 289 --~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGH 343 (425)
T KOG2695|consen 289 --GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGH 343 (425)
T ss_pred --CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeecc
Confidence 1334444 4899999998776566788899999999999999776421 01111122
Q ss_pred ccce--EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004679 215 TLSL--KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (737)
Q Consensus 215 ~~~v--~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (737)
...- .-+...+. +..++++++|...|||.++.++.+.+++.+
T Consensus 344 vN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccccccc-cceEEEccCeeEEEEEecccCceeeccCCC
Confidence 1111 11223444 357888999999999999999988777544
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1.2e-05 Score=88.01 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=132.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
++..++-|+.-..+..+|+.+.+..+.. .-....|.-++.+ +..+.+|...|+|.+-|.++ .+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s----------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNS----------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCc----------Ccee
Confidence 3456777777778889999988777665 3333446666554 46899999999999999986 3558
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~---------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
+++.+|++.|..+.. .+++|++|+. |..|++||+|..+.+..+...
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------------------- 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------------------- 265 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence 999999999998877 4578888875 557899999987755322111
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004679 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
....-+.|.|.-...+++++..|...+-|..+.. +.. ....+ + ..+..+..++++++
T Consensus 266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~----------~~~~v-------~-p~~s~i~~fDiSsn 323 (1118)
T KOG1275|consen 266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA----------GVKMV-------N-PNGSGISAFDISSN 323 (1118)
T ss_pred ----cCchhhhhcccccceEEEEecccceeeccccccCCCcc----------ceeEE-------c-cCCCcceeEEecCC
Confidence 1113456777767789999999999998854322 100 00000 0 11113999999999
Q ss_pred CCEEEEEeCCCeEEEEE
Q 004679 291 GEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 291 g~~l~~g~~dg~v~iwd 307 (737)
|..++.|..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999998
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=8.3e-05 Score=75.78 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=95.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg-~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
+|.+.|.-..+..+++-++.|..|| .|-|+|.++++... + ...-+.|.++..+|+ |.+++.+.....|.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6788899999998888999999999 89999999887544 4 356688999999999 79999998888999999987
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCC
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSS 182 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----g~I~vwdl~~~~~ 182 (737)
++.+ ..-+...+-|+.+.|+| ++.++|-+--+ ..|+++|+..++.
T Consensus 433 gnv~----------~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 433 GNVR----------LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCee----------EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 5432 22233456799999999 67888876554 4799999988654
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=8.8e-06 Score=86.45 Aligned_cols=246 Identities=12% Similarity=0.142 Sum_probs=164.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
.....|++|+.+..++|+|+.||.++|-.+.+.. ..+++ .+|...|.-+.|+.. .+.|-++.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence 3568899999999999999999999999876521 12334 689999999999998 58899999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004679 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.+|.|.+|-+-.+.- -....-....+.|.+++|.. ++..+.....||.|.+=.+...+.
T Consensus 91 t~GlIiVWmlykgsW--------~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI------------ 149 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSW--------CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI------------ 149 (1189)
T ss_pred CCceEEEEeeecccH--------HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee------------
Confidence 999999998875321 00112223466789999998 557777889999998887766541
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004679 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
| ...........+.|+++. ..++.+-.+|.+.+||....- ...+.. .|.-.. ......
T Consensus 150 ---w-----------gKeLkg~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF-~~Kl~~-----~c~Vn~-tg~~s~ 207 (1189)
T KOG2041|consen 150 ---W-----------GKELKGQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNF-ERKLEK-----DCEVNG-TGIFSN 207 (1189)
T ss_pred ---c-----------chhcchheccceeecccH-HHHHhhhcCCcEEEecccccH-HHhhhh-----ceEEee-eeeecC
Confidence 1 111112345578899974 677777788999999975321 111100 000000 000000
Q ss_pred CCCcccceeEEEEc--------CCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCc
Q 004679 275 HGRSSLHLTHVTFS--------PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF 345 (737)
Q Consensus 275 ~~~~~~~i~~v~~s--------p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 345 (737)
.++ .|..+.|. |+...|+++...|.+.|-.-.+. ..+..+..+..+....|+|.+.-++....+...
T Consensus 208 ~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND-~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 208 FPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND-PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA 282 (1189)
T ss_pred CCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC-CCCeEEecccEeecceecCCCcEEEEccCcccc
Confidence 111 14444443 58889999999999998766653 345556666777778899988777766554433
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=3.9e-06 Score=80.61 Aligned_cols=256 Identities=16% Similarity=0.261 Sum_probs=151.6
Q ss_pred ccccccccccccc---cccceeecccC------------CceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeE-----
Q 004679 27 NHSLQMHSSLVRR---LSQERELEGHQ------------GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKL----- 84 (737)
Q Consensus 27 ~~~~~~~~~~~~~---~~~~~~l~~H~------------~~V~~l~~s~~g~--~lasgs~dg~V~vwd~~~~~~----- 84 (737)
-+++.++.-.-.. .+....|++|. ..|+.|.|..++. .++..+.|.+|++|.+.....
T Consensus 47 gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~ 126 (460)
T COG5170 47 GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAE 126 (460)
T ss_pred CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhc
Confidence 3555555422222 34555677775 4588999987543 455566789999998754200
Q ss_pred --------------------------------EE-----EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004679 85 --------------------------------LH-----SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 85 --------------------------------~~-----~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
+. .....|..-|.++.|+.+ ...++++ .|-.|.+|++...
T Consensus 127 nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD--~et~lSa-DdLrINLWnl~i~ 203 (460)
T COG5170 127 NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD--KETLLSA-DDLRINLWNLEII 203 (460)
T ss_pred cccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc--hheeeec-cceeeeecccccc
Confidence 00 001357778899999998 4566654 5788999999865
Q ss_pred CCCCCCCCCCCCceeeccC-----CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 128 SGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
++... +..+++| ..-|++..|+|..-..+.-.+..|.|++-|++.....-... .+.....
T Consensus 204 D~sFn-------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~ 268 (460)
T COG5170 204 DGSFN-------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTI 268 (460)
T ss_pred CCceE-------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--------hhhhhcc
Confidence 54321 2223333 45688999999877777777888999999999765331000 0000000
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccC--CCCcc
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE--HGRSS 279 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 279 (737)
.. .....+..-...|..+.|++. ++++++-. --+++|||.+..+ ++.+++.. |. ....+.. ....-
T Consensus 269 D~-v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvnm~k~pikTi~~h-----~~---l~~~l~d~YEnDai 337 (460)
T COG5170 269 DG-VDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVNMAKNPIKTIPMH-----CD---LMDELNDVYENDAI 337 (460)
T ss_pred Cc-ccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecccccCCceeechH-----HH---HHHHHHhhhhccce
Confidence 00 011122223456788999996 56776654 4789999998654 33332100 00 0000000 00111
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..--.+.||-|...+++|+..+...+|-..+.
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccccC
Confidence 12345789999999999999988888875553
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=7.4e-06 Score=87.03 Aligned_cols=250 Identities=12% Similarity=0.105 Sum_probs=158.7
Q ss_pred ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEEC
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
..++..-.+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+.++.....+ ....++.|.+++|+.+ |..++..-.
T Consensus 58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvYe 135 (1189)
T KOG2041|consen 58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVYE 135 (1189)
T ss_pred ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEEc
Confidence 3444556789999999999999999999999999999999999888643332 1335678999999999 799999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
||.|.+=.+.-..- . -..++ ......+.|+++. ..++.+-.+|.++++|-...... ..+.+|..
T Consensus 136 DGavIVGsvdGNRI--w-------gKeLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~----Kl~~~c~V 199 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRI--W-------GKELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFER----KLEKDCEV 199 (1189)
T ss_pred cCCEEEEeecccee--c-------chhcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHH----hhhhceEE
Confidence 99998766653110 0 01111 1223468999954 55556778899999997765322 11222222
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEe--------cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDIS--------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--------p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
......... ...+..+.|. |+. -.|+++-..|.+.|..-.+...-
T Consensus 200 n~tg~~s~~----------~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~P---------------- 252 (1189)
T KOG2041|consen 200 NGTGIFSNF----------PTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEP---------------- 252 (1189)
T ss_pred eeeeeecCC----------CccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCC----------------
Confidence 221111110 1123444443 443 48999999998888644322100
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCC---------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
.+. ..+-.+..+.|+|+|..|++++.+ +.|.+|..- ++....+...+..++.++|.-.+-.++.
T Consensus 253 ---vv~---dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 253 ---VVV---DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred ---eEE---ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEE
Confidence 000 111248889999999999999875 245555433 3444445555677777777665444433
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.28 E-value=0.00051 Score=70.95 Aligned_cols=234 Identities=9% Similarity=0.053 Sum_probs=131.8
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEE---------CCCcEEEEecCCCCCCCCCCCCCCCce
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGA---------GDAEVRLFNLSRFSGRGLDDNAITPSA 141 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs---------~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (737)
++|.|.|..+++.+..+..+.... .+ ++|+ +..|+ +.+ .+..|.+||..+... +.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----------~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----------IA 91 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccCcE----------Ee
Confidence 799999999999998884333222 34 9999 45554 445 589999999997432 22
Q ss_pred eecc-------CCCceeEEEEecCCCcEEEEEe-C-CCcEEEEEcCCCCCCCCCCCCCCccceEEEec--------cCCc
Q 004679 142 LYQC-------HTRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDL--------RCGA 204 (737)
Q Consensus 142 ~~~~-------h~~~v~~l~~~p~~~~~l~s~s-~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 204 (737)
.+.- .......++++|+ +++|+... . +..|.+.|+.+++.+..+.. ..|...+... ..+.
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence 2221 1223347899994 46665544 4 78999999999886532222 1233322211 0111
Q ss_pred eee----------ccC---CCCCccceEE-EEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004679 205 KRS----------LAD---PPKQTLSLKS-CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (737)
Q Consensus 205 ~~~----------~~~---~~~~~~~v~~-i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (737)
... ... +......+.. =.|.+.++.++.+... |.|.+.|+.......... ...+...
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~--------~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA--------IEAFTEA 239 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce--------eeecccc
Confidence 111 000 0000000000 0345533566666665 999999965433111100 0000000
Q ss_pred cccCCCCcccceeEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004679 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (737)
Q Consensus 271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (737)
....+-....+.-++++|+++++++... .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus 240 -~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 240 -EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred -ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence 0000111112445999999999988532 2589999999855 444555688999999999987
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=1.4e-05 Score=87.58 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=141.2
Q ss_pred CCCCCCChhhhhhhccccCCCC----CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004679 3 NFPFHDGSIYDMLDTRHTDTRP----DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (737)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd 78 (737)
.|.|+-.+...|-...+++++. +.+..+.-++ .++.+..+...-....|+-|+ .+++++++|...|+|.+-|
T Consensus 128 ~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~D--l~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 128 VFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHID--LNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRD 203 (1118)
T ss_pred eecccCCCHHHHHHHhccCCcceeecchhhheeeee--cccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeec
Confidence 3566777777788888887774 3444444444 444444444433333465555 4679999999999999999
Q ss_pred CCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 79 YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 79 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
..+.+.++++ ..|++.|.++... |++|++|+. |..|++||++.... +..+.-+.++
T Consensus 204 ~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----------l~PI~~~~~P 268 (1118)
T KOG1275|consen 204 PNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----------LSPIQFPYGP 268 (1118)
T ss_pred CCcCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhc----------cCCcccccCc
Confidence 9999999999 8999999887664 679999975 56689999997433 2222223333
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc
Q 004679 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 229 (737)
.-+.|+|.-...+++++..|...+-|..+...+. ..... .......+.++++++. ++
T Consensus 269 -~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--------~~~~~-------------v~p~~s~i~~fDiSsn-~~ 325 (1118)
T KOG1275|consen 269 -QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--------AGVKM-------------VNPNGSGISAFDISSN-GD 325 (1118)
T ss_pred -hhhhhcccccceEEEEecccceeeccccccCCCc--------cceeE-------------EccCCCcceeEEecCC-Cc
Confidence 4578888777888899999999999944332110 00000 0112234888999997 68
Q ss_pred EEEEEeCCCcEEEEECCC
Q 004679 230 LLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~ 247 (737)
.++.|..+|.|.+|--+.
T Consensus 326 alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eEEEecccCcEeeecCCC
Confidence 999999999999997443
No 296
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=5.7e-05 Score=81.81 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=91.8
Q ss_pred CCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEE-CCCcEEE
Q 004679 50 QGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRL 121 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~-----dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~i 121 (737)
.+.....+|||||+.||..+. +-.+.+|++..+ .....+...........+|+|+ |..|+..+ .+|...|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~l 307 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPRI 307 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCceE
Confidence 344556899999988876542 223445777653 1222331222234467899999 67666554 5676666
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE-eCC--CcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SED--GTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~D--g~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
|.+...... .....+..+...+....|+|++ +.|+.. ..+ ..|.+||+.+++..
T Consensus 308 y~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~--------------- 364 (428)
T PRK01029 308 YIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY--------------- 364 (428)
T ss_pred EEEECcccc-------cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence 654321100 0022233344566788999955 555444 333 36888998776521
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeC--CCcEEEEECCCCC
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGS--DAFARLYDRRMLP 249 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~--Dg~i~iwd~~~~~ 249 (737)
.+... ...+....|+|++ +.|+ ++.. ...|.++|+..++
T Consensus 365 --------~Lt~~---~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 --------QLTTS---PENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------EccCC---CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC
Confidence 11111 1234568899974 5555 4433 3568888887654
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.26 E-value=0.00053 Score=80.69 Aligned_cols=231 Identities=10% Similarity=0.132 Sum_probs=141.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vw----d~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
.+.|.++.+-++...|+.+..+|.|.+. +....... .. ..-+..|.+++|||| +.+|+....+++|.+-+-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~V-G~vd~GI~a~~WSPD--~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IV-GSVDSGILAASWSPD--EELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EE-EEEcCcEEEEEECCC--cCEEEEEeCCCEEEEEecc
Confidence 4679999999999999999999999999 55544321 11 234678999999999 7999999888888774322
Q ss_pred ----C---------CCCCC-----------CC---CCC-----CCCc------eeeccCCCceeEEEEecCCCcEEEEEe
Q 004679 126 ----R---------FSGRG-----------LD---DNA-----ITPS------ALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 126 ----~---------~~~~~-----------~~---~~~-----~~~~------~~~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
. +..+. .. .+. ..+. ..+. +.+.-..|+|.. ++.++|+.+
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yFAVss 228 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYFAVSS 228 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEEEEEE
Confidence 0 00000 00 000 0000 1122 344556799988 668888776
Q ss_pred C---C---CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---CC
Q 004679 168 E---D---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DA 238 (737)
Q Consensus 168 ~---D---g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg 238 (737)
. . +.+++|+-. +... .... .-.+--.+++|-|. |+++|+.-. ..
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~-----------------------stSE--~v~gLe~~l~WrPs-G~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQ-----------------------STSE--PVDGLEGALSWRPS-GNLIASSQRLPDRH 281 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEE-----------------------eccc--cCCCccCCccCCCC-CCEEEEEEEcCCCc
Confidence 4 2 578899854 3211 0000 11122346899997 688888754 35
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---cce
Q 004679 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG---GRA 315 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~---~~~ 315 (737)
.|.+|..+..+ -..+..+. ......|..++|++|+..|++...|. |.+|-..+-. +..
T Consensus 282 ~VvFfErNGLr-hgeF~l~~-----------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 282 DVVFFERNGLR-HGEFTLRF-----------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred EEEEEecCCcE-eeeEecCC-----------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 66677655332 11111110 11222589999999999999988664 9999887744 112
Q ss_pred eeeecCCCCeeeeeccC
Q 004679 316 MRYTVGDASKIMSFTPT 332 (737)
Q Consensus 316 ~~~~~~~~~~~~~~~p~ 332 (737)
..+........+.|+|.
T Consensus 343 i~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEccCCCCCCceEECCC
Confidence 22233444455888885
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.00054 Score=73.80 Aligned_cols=192 Identities=9% Similarity=0.075 Sum_probs=110.8
Q ss_pred ceEEEEEcCCCCE-EEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECC--CcEEEEec
Q 004679 52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL 124 (737)
Q Consensus 52 ~V~~l~~s~~g~~-lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~d--g~I~iwd~ 124 (737)
.+..-.|+|||+. ++..+. +..|.++|+.+++..... ..........|+|+ |..+ ++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence 6778999999984 654433 356899999888755433 24455667889999 5554 455444 45666776
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
.... ...+..+........|+|++..++++....+ .|.+.|+.+++.
T Consensus 265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-------------------- 313 (419)
T PRK04043 265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-------------------- 313 (419)
T ss_pred CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------------------
Confidence 5432 2222223322345689996655666654444 466666665542
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---------CcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
..+... +. ....|+|++ +.++..... ..|.+.|+.++... .+.
T Consensus 314 ---~rlt~~-g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT------------------ 365 (419)
T PRK04043 314 ---EQVVFH-GK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT------------------ 365 (419)
T ss_pred ---EeCccC-CC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC------------------
Confidence 112111 11 113799985 555544432 36778888765421 110
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCC
Q 004679 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH 310 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~ 310 (737)
..+ ......|+|||+.|+....+ + .+.+.++..
T Consensus 366 ~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 366 ANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 000 12247899999988777653 2 466666654
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=8.9e-05 Score=77.06 Aligned_cols=251 Identities=11% Similarity=0.099 Sum_probs=136.2
Q ss_pred ceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEccc--Cccce-EEEEEeeCCCCCEEEEEECCC
Q 004679 52 CVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIETG--HSANV-FCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~-----------dg~V~vwd~~~~~~~~~~~~~--h~~~V-~~v~~sp~~~~~~l~sgs~dg 117 (737)
.|.-+.|||+.++|+|=+. -..++|||+.+|.....| .. ....+ .-..||.+ +.++|.-.. .
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF-~~~~~~~~~WP~frWS~D--dKy~Arm~~-~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF-PVIKSPYLKWPIFRWSHD--DKYFARMTG-N 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce-eccCCCccccceEEeccC--CceeEEecc-c
Confidence 5888999999999998653 257999999999988887 33 12222 34679998 577766655 5
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-----CCcEEEEEcCCCCCCCCCC-----
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAG----- 187 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----Dg~I~vwdl~~~~~~~~~~----- 187 (737)
.|.||+...... +....-.-..|....|+| .+++||-=.. -..+.+..+.+.+.+....
T Consensus 327 sisIyEtpsf~l----------ld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs 395 (698)
T KOG2314|consen 327 SISIYETPSFML----------LDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS 395 (698)
T ss_pred eEEEEecCceee----------ecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence 788998764211 111111234566777887 4455542111 1123333333222211000
Q ss_pred --------CCCCccceE----------------EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---CCcE
Q 004679 188 --------SSHQECRNI----------------LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DAFA 240 (737)
Q Consensus 188 --------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg~i 240 (737)
.+..-|..+ +..++...+. + ..-.....|...+|-|.+ +.+++-+. ..++
T Consensus 396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp-v-e~velke~vi~FaWEP~g-dkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-V-EVVELKESVIAFAWEPHG-DKFAVISGNTVKNTV 472 (698)
T ss_pred ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC-c-eeeecchheeeeeeccCC-CeEEEEEccccccce
Confidence 000000000 0000000000 0 001123467788999974 56555443 3578
Q ss_pred EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceee
Q 004679 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~ 317 (737)
.+|-+++..... ..+..+ .. ...+.+.|+|.|++++++.- .|.+.++|+.-.......
T Consensus 473 sfY~~e~~~~~~---------~lVk~~---------dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~ 533 (698)
T KOG2314|consen 473 SFYAVETNIKKP---------SLVKEL---------DK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA 533 (698)
T ss_pred eEEEeecCCCch---------hhhhhh---------cc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc
Confidence 888877421111 111111 11 14788999999999888754 689999999863333333
Q ss_pred eecCCCCeeeeeccCCCCccCC
Q 004679 318 YTVGDASKIMSFTPTLNGLELQ 339 (737)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~~ 339 (737)
.......+.+.|.|++.-+...
T Consensus 534 ~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 534 SPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred CccccccccceECCCCCEEEEe
Confidence 3333445567788877655443
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.1e-05 Score=74.91 Aligned_cols=89 Identities=11% Similarity=0.229 Sum_probs=76.1
Q ss_pred ccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004679 39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
.++....+.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..+ ..+ ..+++++|.-+. ..++..|-.+|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG 258 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNG 258 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCc
Confidence 3444557778899999999999766 8889999999999999999888887 566 889999999986 77888999999
Q ss_pred cEEEEecCCCCCC
Q 004679 118 EVRLFNLSRFSGR 130 (737)
Q Consensus 118 ~I~iwd~~~~~~~ 130 (737)
.|.+||++..++.
T Consensus 259 ~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 259 MVLVYDMRQPEGP 271 (463)
T ss_pred eEEEEEccCCCch
Confidence 9999999976543
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=7.4e-06 Score=80.06 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=107.9
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
++|+-+..+.. ++.+.+-.|-+-++.++- .+.+. -.+.|.++.|.. ..++++.|+.+|.|...|++
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence 36664432334 555566777787877643 23333 566788888887 55899999999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC---ccccc
Q 004679 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP---LTSCQ 255 (737)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~---~~~~~ 255 (737)
.... +...+...++ |...|++++.-...++.|++.+.+|.|++||+|..+. +..+
T Consensus 283 ~rnq------G~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY- 340 (425)
T KOG2695|consen 283 CRNQ------GNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY- 340 (425)
T ss_pred eccc------CCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee-
Confidence 8741 2223333332 4566777766553457999999999999999997654 2222
Q ss_pred CCCCCCCCccccccccccCCCCccc-ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004679 256 KRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
.||... .-.-+-+.+....+++++.|...+||.++.+....
T Consensus 341 -------------------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 341 -------------------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred -------------------ecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 122210 11123456777889999999999999999876433
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00015 Score=78.90 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=111.9
Q ss_pred ecccCCceEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC---CCCE
Q 004679 46 LEGHQGCVNAISWNS-------------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET---SDEL 109 (737)
Q Consensus 46 l~~H~~~V~~l~~s~-------------~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~~ 109 (737)
|..|.+.|.-..+.- +|++++||+.||+|.|-.+.+.+..+++ ....++.+++++|+- ....
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhh
Confidence 444666655555443 4999999999999999999998877776 356899999999971 1457
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004679 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~ 189 (737)
+++|+..| +.++.-+-.... ....+....++|.++.| .++++|=++.+| |++||+...+.+..+...
T Consensus 132 fv~GG~ag-lvL~er~wlgnk--------~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNK--------DSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred eeecCcce-EEEehhhhhcCc--------cceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 99999988 777754422111 12245566789999999 457887776665 999999887754322222
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
+. .+........+.|.+. ..|+.|-. .+|+|..++.
T Consensus 199 ~~-------------------~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 199 SQ-------------------SVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CC-------------------CCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence 11 1111223345778774 57777765 4688888873
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.11 E-value=0.0011 Score=66.42 Aligned_cols=221 Identities=11% Similarity=0.048 Sum_probs=132.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004679 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 55 ~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 133 (737)
+..|.+ ++.++++--..+.|..|+..+++..... ... ...+++... +..|+.+..++ +.++|+....-
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~~--~~G~~~~~~--~g~l~v~~~~~-~~~~d~~~g~~---- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LPG--PNGMAFDRP--DGRLYVADSGG-IAVVDPDTGKV---- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SSS--EEEEEEECT--TSEEEEEETTC-EEEEETTTTEE----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cCC--CceEEEEcc--CCEEEEEEcCc-eEEEecCCCcE----
Confidence 577888 7778888878999999999888654322 122 777888833 24555555544 55558775321
Q ss_pred CCCCCCceeec--c-CCCceeEEEEecCCCcEEEEEeCC--------CcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 134 DNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 134 ~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~~l~s~s~D--------g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
..+.... . .....+.+++.| ++++.++.... |.|..++.. ++. ..+.
T Consensus 73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~---- 130 (246)
T PF08450_consen 73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA---- 130 (246)
T ss_dssp ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence 1122221 1 345678999999 55666665543 345666655 220 0111
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccc
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
......+.++|+|++..++++-+..+.|..|++..... +... ..+ ..+. .....
T Consensus 131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------~~~--~~~~---~~~g~ 185 (246)
T PF08450_consen 131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR----------RVF--IDFP---GGPGY 185 (246)
T ss_dssp ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------EEE--EE-S---SSSCE
T ss_pred ----------cCcccccceEECCcchheeecccccceeEEEeccccccceeee----------eeE--EEcC---CCCcC
Confidence 11234689999998544556777889999999864321 1100 000 0000 00013
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCC
Q 004679 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLN 334 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~ 334 (737)
.-.++++.+|++.++....+.|.+++.. ++...........++.++|. |+.+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 6679999999988888889999999988 66555444445677888883 4433
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.08 E-value=0.00035 Score=71.36 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=128.6
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC-cEEEEecCCCCCCCCCCC
Q 004679 58 WNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 58 ~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~ 135 (737)
|++ +|++++..|. |+..|.+...+-.++ -+|...|.-..+..+ +.-++.|..|| .+-|+|.....
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce-------
Confidence 444 6888988886 788888877765554 467888999999988 56899999999 89999998643
Q ss_pred CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004679 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (737)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (737)
+..+...-+.|.++..++ ++++++.+.....|.+.|+.++... +++ ....
T Consensus 394 ----~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~-------------~id------------kS~~ 443 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVR-------------LID------------KSEY 443 (668)
T ss_pred ----EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCee-------------Eec------------cccc
Confidence 455666778899999999 6688888888888999999988632 111 1234
Q ss_pred cceEEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004679 216 LSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
.-|+.+.|+|+ ++++|-+--+| .|+++|+..++...... ..++ =-+-+|.|++
T Consensus 444 ~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT------------------~ta~----DfsPaFD~d~ 500 (668)
T COG4946 444 GLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT------------------PTAY----DFSPAFDPDG 500 (668)
T ss_pred ceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC------------------Cccc----ccCcccCCCC
Confidence 67899999997 68999887665 58999998766332210 0111 1235799999
Q ss_pred CEEEEEeC
Q 004679 292 EEVLLSYS 299 (737)
Q Consensus 292 ~~l~~g~~ 299 (737)
++|.--+.
T Consensus 501 ryLYfLs~ 508 (668)
T COG4946 501 RYLYFLSA 508 (668)
T ss_pred cEEEEEec
Confidence 98765543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=8.1e-05 Score=80.90 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
...++|++++ +++|+-|+-+|.|++++....- .+. ..|... ..+ |.++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~------~~~--Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS------ILE--GEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc------ccC--CceEEEecCCCcEEEeeccCCcc
Confidence 3567777775 6899999999999999976543 222 235433 233 89999999999999998876432
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
... .....++.+++++|+ ..+.+++|+.-| +.++.-+-....
T Consensus 106 ----------~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------- 151 (846)
T KOG2066|consen 106 ----------ITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------- 151 (846)
T ss_pred ----------cee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence 122 234567899999995 245788999888 766642211100
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
..+ ......+.|.++.|. ++++|=++.+| |++||+.+.+.+..++.+...++... --..+
T Consensus 152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~---------------fpphl 211 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL---------------FPPHL 211 (846)
T ss_pred cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc---------------CCCce
Confidence 000 122456889999997 46888887665 89999999888877765442222111 13347
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 286 ~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|.++.+ |+.|=.| +|+|..++.
T Consensus 212 ~W~~~~~-LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 212 HWQDEDR-LVIGWGD-SVKICSIKK 234 (846)
T ss_pred EecCCCe-EEEecCC-eEEEEEEec
Confidence 7887754 7777777 888888883
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.8e-05 Score=77.02 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=142.4
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEEEec
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 124 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~iwd~ 124 (737)
|.+.|+-+.. .-.+++.+++.||.++.|--.. + +.+..+ ..|-..|.+++.+-+ +.++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 6777766543 3568999999999999998543 2 334445 678899999999998 788899777 999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
...+... ...+..-.+ .+.|....+ .+-++.-.++.+.++|-......
T Consensus 84 En~Dmin--------miKL~~lPg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------------- 135 (558)
T KOG0882|consen 84 ENFDMIN--------MIKLVDLPG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------------- 135 (558)
T ss_pred eccchhh--------hcccccCCC---ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence 8643211 111111122 223322122 23333445788999987665422
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCC-cccccCCCCCCCCccccccccccCCCCc
Q 004679 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
...+...|..+|..+.+++. +..+++....|.|..|.... .+. ...+......... +.+....
T Consensus 136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd--------Ly~f~K~ 200 (558)
T KOG0882|consen 136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD--------LYGFPKA 200 (558)
T ss_pred ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccch--------hhccccc
Confidence 12233457788999999997 57888888889999998873 111 1111111000000 1111112
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004679 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
....+++.|+|+|..+.+-+.|.+|+++++.+++...
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 2247889999999999999999999999999976443
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.06 E-value=0.00079 Score=69.68 Aligned_cols=250 Identities=12% Similarity=0.097 Sum_probs=151.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCeEEEEEcccCccc--eE-EEEEeeCCCCCEEEE
Q 004679 51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS 112 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg---------------~V~vwd~~~~~~~~~~~~~h~~~--V~-~v~~sp~~~~~~l~s 112 (737)
..|.-+.|+|++++|.+-+..+ .+.|||+.++..+..+ ..-..+ .. -+.|+-+ ..+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence 4688999999999999876533 4999999999999888 444333 44 6778887 455544
Q ss_pred EECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEE-----EeCCCcEEEEEcCCCCCCCCC
Q 004679 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 113 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s-----~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
. ....++|+++.. .... .+...++ ...|....|+|. +...|+. .+.++++++|.+..+..+...
T Consensus 149 v-v~~sl~i~e~t~-n~~~------~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 149 V-VGSSLYIHEITD-NIEE------HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred h-ccCeEEEEecCC-cccc------Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 4 456799999732 1110 1122222 356788888885 2233432 466788999988755543100
Q ss_pred C-------------CCCCcc-----------------ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-
Q 004679 187 G-------------SSHQEC-----------------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG- 235 (737)
Q Consensus 187 ~-------------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s- 235 (737)
- .+..-| ...+..++.. .+.-.....+.|...+|.|.. +.+++.+
T Consensus 219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~~~~~pVhdf~W~p~S-~~F~vi~g 294 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEKDLKDPVHDFTWEPLS-SRFAVISG 294 (561)
T ss_pred eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceeccccccceeeeecccC-CceeEEec
Confidence 0 000001 1111111111 111112446789999999985 5555544
Q ss_pred -CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 004679 236 -SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (737)
Q Consensus 236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~ 311 (737)
.+..+.++|++.. ....+ ... .-+.+.|+|.+++++.++.| |.+.+||....
T Consensus 295 ~~pa~~s~~~lr~N-l~~~~----------------------Pe~-~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 295 YMPASVSVFDLRGN-LRFYF----------------------PEQ-KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccccceeecccccc-eEEec----------------------CCc-ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 7788999999864 11111 111 34568899999999998875 68999998874
Q ss_pred CcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004679 312 GGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
.. ......+.......|+|+++-+......
T Consensus 351 f~-~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 351 FK-VAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred eE-EEEEeecCCceEeeccCCceEEEecCCC
Confidence 32 2222234444556689987665554433
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00084 Score=72.33 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=115.0
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004679 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (737)
..|.+=|.+... .+.+.. . ..+..-.|+|+ |+ .++..+. +..|.++|+..+.. ..+....
T Consensus 169 ~~l~~~d~dg~~-~~~~~~-~-~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVK-G-GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIASSQ 232 (419)
T ss_pred ceEEEECCCCCc-eeEEcc-C-CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE-----------EEEecCC
Confidence 355555655443 333422 2 37788999999 56 3554333 35588888875432 2222344
Q ss_pred CceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004679 148 RRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (737)
Q Consensus 148 ~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 225 (737)
+......|+|++..++++.+.++ .|.++|+..+.. ..+...+. ......|+|
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------~~LT~~~~---~d~~p~~SP 286 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------TQITNYPG---IDVNGNFVE 286 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----------------------EEcccCCC---ccCccEECC
Confidence 55667889996666666665554 466667665531 11221111 122347999
Q ss_pred CCCcEEEEEeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004679 226 TRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (737)
Q Consensus 226 ~~~~~l~t~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--- 300 (737)
++..++++....+ .|.++|+.+++..... ..+. ....|+|+|++|+.....
T Consensus 287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-------------------~~g~-----~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-------------------FHGK-----NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------------cCCC-----cCceECCCCCEEEEEEcCCCc
Confidence 8544444443444 5777777765421110 0011 124899999998887763
Q ss_pred ------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCC
Q 004679 301 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (737)
Q Consensus 301 ------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 341 (737)
..|.+.|+.++....... +.......|+|+++.+.+...
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence 368888888765433322 223345789999887777643
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.00 E-value=0.00035 Score=82.15 Aligned_cols=219 Identities=16% Similarity=0.170 Sum_probs=132.1
Q ss_pred cCCceEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcE
Q 004679 49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 119 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~---d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I 119 (737)
+...-..|+|-.||+++|+.+. . ..||||+-+ |....+- ..-.+--.+++|-|. |+++++... ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 4445567999999999998764 2 478999965 5543333 222333457899999 799988865 3556
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+|.-+-..... ..-.+......|..+.|++ ++.+|+....|. |.+|-..+.. |.
T Consensus 284 vFfErNGLrhge-------F~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNGLRHGE-------FTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCCcEeee-------EecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 666544211111 0111223556789999999 668888877655 9999877653 11
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC----CCC--------ccccc----------C-
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM----LPP--------LTSCQ----------K- 256 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~----~~~--------~~~~~----------~- 256 (737)
++. .+... ....+..+.|+|.++..|...+.+|.+..++..- +.- +..+. .
T Consensus 339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 110 01110 1122334788888777777777767766555421 100 00000 0
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004679 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..+||.+...+ .-..+|..++|++++..+++-..||.|.+|.....
T Consensus 413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 01122111111 11236999999999988999999999999997664
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.0032 Score=62.93 Aligned_cols=190 Identities=14% Similarity=0.158 Sum_probs=116.8
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEeeCCCCCEEEEEECC--------CcE
Q 004679 53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 119 (737)
Q Consensus 53 V~~l~~s-~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I 119 (737)
...+++. +++.+++ +... .+.++|..+++....+.. . .....+++++.|+ |++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6678888 5655555 4443 556669988865443321 1 3467889999999 7888877654 445
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
..++.. .. ...+...-...+.|+|+|++..++++-+..+.|..+++...... ......+.+
T Consensus 118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 555554 11 22233334557899999966556667788899999998754320 000111111
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
..........+++..+ +++.++....+.|.++|.+ ++.+..+..+ .
T Consensus 179 -----------~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-------------------~-- 224 (246)
T PF08450_consen 179 -----------FPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP-------------------V-- 224 (246)
T ss_dssp ------------SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S-------------------S--
T ss_pred -----------cCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-------------------C--
Confidence 1222235778999986 5788887889999999988 6655444211 0
Q ss_pred cceeEEEEc-CCCCEEEEEeC
Q 004679 280 LHLTHVTFS-PNGEEVLLSYS 299 (737)
Q Consensus 280 ~~i~~v~~s-p~g~~l~~g~~ 299 (737)
..+++++|. |+...|++.+.
T Consensus 225 ~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEEB
T ss_pred CCEEEEEEECCCCCEEEEEeC
Confidence 148999994 77777776553
No 311
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.95 E-value=2.3e-05 Score=52.02 Aligned_cols=39 Identities=36% Similarity=0.553 Sum_probs=36.4
Q ss_pred ccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004679 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (737)
Q Consensus 659 ~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~ 697 (737)
++++..+.+|...|+++.|+|.+.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567888999999999999999999999999999999996
No 312
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=5.2e-06 Score=87.51 Aligned_cols=210 Identities=12% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEE-EEEcccCccceEEEEEeeCCCCCEEEEEE----CCCcEEEE
Q 004679 50 QGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF 122 (737)
Q Consensus 50 ~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----~dg~I~iw 122 (737)
...+.|+++..+ ...++.|..+|.|-+-.+....-- +.+..+|..++++++|++-. .+.||.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 456788887763 458899999999999887643322 33436788999999999963 46777773 36789999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
|+...-..+.+ .+...- +......+++|.. +.+++.+|...+.++++|++.....
T Consensus 135 di~s~ltvPke----~~~fs~-~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~------------------- 189 (783)
T KOG1008|consen 135 DINSLLTVPKE----SPLFSS-STLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS------------------- 189 (783)
T ss_pred ecccccCCCcc----cccccc-ccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh-------------------
Confidence 99864221111 111111 1334456888885 6678889998899999999954311
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE-CCCCC-CcccccCCCCCCCCccccccccccCCCCccc
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
... -.+..+..+..+|-.+++++.-. ||.|-+|| .+..+ ++..+... ......
T Consensus 190 --~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~-----------------~N~~~~ 244 (783)
T KOG1008|consen 190 --VSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRN-----------------ENKKPK 244 (783)
T ss_pred --hhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhC-----------------CCCccc
Confidence 000 11234566777786567777665 99999999 44322 22222111 001111
Q ss_pred ceeEEEEcCCCC-EEEEEeC-CCeEEEEEcCC
Q 004679 281 HLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 281 ~i~~v~~sp~g~-~l~~g~~-dg~v~iwd~~~ 310 (737)
.+..++|+|... .+++... .++|+.+|+..
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 488899999532 2444444 67999999876
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00095 Score=73.43 Aligned_cols=220 Identities=13% Similarity=0.174 Sum_probs=132.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECCCc-----EEEEecC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~dg~-----I~iwd~~ 125 (737)
.|+| |++.+..+|.|+.+|.|.+.+- .-+.+..| +.+... |..+..... .++|++.+.|+. |+||++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence 5655 6788999999999999988873 33445667 566666 555544443 468888887754 8999998
Q ss_pred CCCCCCCCCCCCCCc--eeecc-----CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004679 126 RFSGRGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
..++... ..++ ..+.. ...++.+++.+. +-..+|+|-.+|.|..+.=.-.+ ..+..
T Consensus 101 k~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~R---------Drgsr--- 163 (933)
T KOG2114|consen 101 KVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILR---------DRGSR--- 163 (933)
T ss_pred ccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchh---------ccccc---
Confidence 6532210 1112 11112 356788999988 56889999999999988422111 00001
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
..-......+|+++.+..+....+.++. -..|.+|.+....+.... ..+.
T Consensus 164 ---------~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~--------------------ld~~ 213 (933)
T KOG2114|consen 164 ---------QDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKV--------------------LDNN 213 (933)
T ss_pred ---------eeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceee--------------------eccC
Confidence 1111233578999999887433233333 467889988733211110 2244
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCee
Q 004679 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 326 (737)
+..+.|..+++....+++++ +..+++|+... ..+...+..++....
T Consensus 214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~-~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDG-RGPCFAFEVGEKKEM 259 (933)
T ss_pred CccceeeecCCCCccEEEec-CceEEEEcCCC-cceeeeecCCCeEEE
Confidence 44688888887555455444 44899999875 444444444443333
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.0012 Score=70.19 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=96.1
Q ss_pred cccccccccccccccceeecccCCceEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCe--EEEEEcccCccce
Q 004679 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTHI----NVWSYSSRK--LLHSIETGHSANV 96 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasg----s~dg~V----~vwd~~~~~--~~~~~~~~h~~~V 96 (737)
..+-++.....+++.+..++--.++ .++.||. +...+.|. +.+|.+ .+|++...+ .+........+.|
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v 262 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQV 262 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcc
Confidence 3555666555566666666655555 5788887 44555543 334443 467765543 2222223577899
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
.|++++|+ .+.|+.|+.||.|.+||..... ..+....-.++.++|+| ++.++++|+..|.+.+||
T Consensus 263 ~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~~------------t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 263 ICCARSPS--EDKLVLGCEDGSIILYDTTRGV------------TLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFD 327 (545)
T ss_pred eEEecCcc--cceEEEEecCCeEEEEEcCCCe------------eeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEE
Confidence 99999999 6999999999999999997532 22223445578899999 668999999999999999
Q ss_pred cCCCC
Q 004679 177 FRQGS 181 (737)
Q Consensus 177 l~~~~ 181 (737)
+.-..
T Consensus 328 ~ALsp 332 (545)
T PF11768_consen 328 MALSP 332 (545)
T ss_pred eecCc
Confidence 87654
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.0015 Score=64.21 Aligned_cols=231 Identities=14% Similarity=0.139 Sum_probs=117.9
Q ss_pred ceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004679 43 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i 121 (737)
.+.+.+-...+.+|+|+|+.. ++++....+.|...+. +|+.+..+........-.|++..+ +.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 356777667799999999755 6666777888888886 477777774333466888999876 555555556899999
Q ss_pred EecCCCCCCCCCCCCCCC--ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 122 FNLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+++........ ...... +.....+...+-.++|+|.+..++ .+-......++.+...... . .......
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~-------~-~~~~~~~ 160 (248)
T PF06977_consen 91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG-------F-DLFVSDD 160 (248)
T ss_dssp EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S-------S---EEEE-
T ss_pred EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc-------c-ceeeccc
Confidence 99854222110 000000 011123455688999999655555 5555666677776642100 0 0000000
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
..+.........+.+++++|..+.+++.+..+..|.++| ..++++..+...... + +-...-
T Consensus 161 ------~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~--gl~~~~ 221 (248)
T PF06977_consen 161 ------QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------H--GLSKDI 221 (248)
T ss_dssp ------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------G--G-SS--
T ss_pred ------cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------c--Cccccc
Confidence 001101122345788999998888999998999999999 455544433211000 0 000111
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iw 306 (737)
...-.|+|.++|. |++.+.-+..++|
T Consensus 222 ~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 222 PQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred CCccEEEECCCCC-EEEEcCCceEEEe
Confidence 2367799999996 5666666676665
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=9.5e-06 Score=85.58 Aligned_cols=171 Identities=21% Similarity=0.303 Sum_probs=117.5
Q ss_pred ceeecccCCceEEEEEcC-CCCEEEEEe----CCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004679 43 ERELEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~-~g~~lasgs----~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
.....+|..++++++|++ |.+.||.|- .|-.+.|||+.++- ....|..+......+++|..+ ..++++|
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaG 172 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAG 172 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcc
Confidence 344567888999999998 778888883 46779999998761 222332224456678889876 5788899
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE-cCCCCCCCCCCCCCCc
Q 004679 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQE 192 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd-l~~~~~~~~~~~~~~~ 192 (737)
.....++++|++.... ....-.+..+..+.++|-.++++++ ..||.|.+|| .++-+.+..
T Consensus 173 m~sr~~~ifdlRqs~~-----------~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~------- 233 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLD-----------SVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQ------- 233 (783)
T ss_pred cccchhhhhhhhhhhh-----------hhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHH-------
Confidence 8899999999995322 2222345566778888877788854 5599999999 444332200
Q ss_pred cceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCC
Q 004679 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM 247 (737)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~ 247 (737)
..+.........+..++|.|....++++...| ++|+.||+..
T Consensus 234 -------------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 -------------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -------------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 01111222334688999999877778877755 7999999863
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.65 E-value=0.015 Score=58.27 Aligned_cols=219 Identities=11% Similarity=0.102 Sum_probs=132.0
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEEcccCccc--eEEEEEeeCCCCCEEEEEEC-----CCcEEEEe
Q 004679 53 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFN 123 (737)
Q Consensus 53 V~~l~~s~-~g~~lasgs~dg~-V~vwd~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~~l~sgs~-----dg~I~iwd 123 (737)
...++.+| .+..++.+-.-|+ ..+||..+++....+ ...... --.-.|+++ |.+|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence 34678888 5667777877666 578999999888776 222221 124679999 788887643 58899999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-------CCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-------DGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
.... +..+..+..|.-....+.+.|+ +..|+.+.- .|.-++ ++.+. .....
T Consensus 84 ~~~~---------~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~ 141 (305)
T PF07433_consen 84 AARG---------YRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLV 141 (305)
T ss_pred CcCC---------cEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceec-Chhhc-----------CCceE
Confidence 9831 2336667777777788999994 455555421 122221 22222 23345
Q ss_pred EEeccCCceeeccCC--CCCccceEEEEEecCCCcEEEEEeCCCc-------EEEEECCCCCCcccccCCCCCCCCcccc
Q 004679 197 LLDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDAF-------ARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
+.+..++........ ..|...+..+++.++ +..++..-..|. |-+++.. ..+..+..+
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p---------- 208 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAP---------- 208 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCC----------
Confidence 566666766555555 447788999999986 333333322221 2222221 111111100
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004679 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG 313 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~ 313 (737)
......- ...|-+|++++++.++++.+- .+.+.+||..++..
T Consensus 209 ---~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 209 ---EEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred ---hHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 0000011 124899999999998877777 67999999999763
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.63 E-value=0.00035 Score=74.12 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=63.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
.....|.|++++|+.+.|+.|..||.|.+||...+..... ...-..+.++|+|+ |.+|++|+..|.+.+||+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence 4677899999999999999999999999999887643322 24566889999999 79999999999999999984
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0027 Score=63.93 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=76.6
Q ss_pred EEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEE
Q 004679 74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 153 (737)
Q Consensus 74 V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 153 (737)
|++.+..+.+... +...+...|.+++|+|.. ..++..++.+..|+|.|+.+... +..+..+ ..++++
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~~~----------vssy~a~-~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETSCV----------VSSYIAY-NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEeccccee----------eeheecc-CCceee
Confidence 5555555555544 336788999999999985 34889999999999999996332 4445555 789999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004679 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 154 ~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+|+-++.++++.|-..|.|.+||++..+.+
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCch
Confidence 999988899999999999999999987654
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.60 E-value=0.1 Score=56.25 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceE------EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF------CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~------~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 134 (737)
.+..++.++.++.|.-+|..+|+.+..........+. -+.-.|--.+..++.++.+|.+..+|..+++..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~---- 143 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA---- 143 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc----
Confidence 4567888888899999999999988776322111000 000011001356777888999999998865432
Q ss_pred CCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004679 135 NAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
...... ..+. +.... + ..++.+..++.+..+|..+++.. |........ + ....
T Consensus 144 ------W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~--------------W~~~~~~~~-~-~~~~ 197 (394)
T PRK11138 144 ------WQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVK--------------WTVNLDVPS-L-TLRG 197 (394)
T ss_pred ------ccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeecCCCCc-c-cccC
Confidence 111111 1111 11221 3 35556778899999999988732 332211000 0 0000
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CC
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 291 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g 291 (737)
...++ .. + ..++.++.++.+..+|..+++.+-.......... ........+.-+| .+
T Consensus 198 ~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--------------~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--------------TEIDRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCc--------------cchhcccccCCCcEEEC
Confidence 00111 11 1 3567777889999999988876544321110000 0000011111122 35
Q ss_pred CEEEEEeCCCeEEEEEcCCCC
Q 004679 292 EEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 292 ~~l~~g~~dg~v~iwd~~~~~ 312 (737)
..+++++.+|.++.+|..+++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC
Confidence 568888889999999999875
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.55 E-value=0.0069 Score=60.12 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004679 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
+++..+++++.++.|..||..+|+.+..+. . ...+....... +..++.+..++.|..+|..++..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~---~~~v~v~~~~~~l~~~d~~tG~~---------- 98 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAPVVD---GGRVYVGTSDGSLYALDAKTGKV---------- 98 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGEEEE---TTEEEEEETTSEEEEEETTTSCE----------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEee-c-cccccceeeec---ccccccccceeeeEecccCCcce----------
Confidence 356777878899999999999999888873 2 22222212222 46777777888999999776432
Q ss_pred ceee-ccC----C-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004679 140 SALY-QCH----T-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 140 ~~~~-~~h----~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
+... ... . .......+. +..++.+..++.|..+|+++++.+ |........ ......
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~--------------w~~~~~~~~-~~~~~~ 160 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLL--------------WKYPVGEPR-GSSPIS 160 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEE--------------EEEESSTT--SS--EE
T ss_pred eeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEE--------------EEeecCCCC-CCccee
Confidence 2221 111 1 111223332 466777888999999999998632 222111000 000000
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCE
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 293 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~ 293 (737)
....+..-....+ + .++.++.++.+..+|+.+++.+-... .. .+.. ....++..
T Consensus 161 ~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~~~----------------------~~-~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 161 SFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWSKP----------------------IS-GIYS-LPSVDGGT 214 (238)
T ss_dssp EETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEEEC----------------------SS--ECE-CEECCCTE
T ss_pred eecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEEec----------------------CC-CccC-CceeeCCE
Confidence 0011122222222 3 66677777754444998876321110 00 1222 14567888
Q ss_pred EEEEeCCCeEEEEEcCCCC
Q 004679 294 VLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 294 l~~g~~dg~v~iwd~~~~~ 312 (737)
|++++.++.|.+||+.+++
T Consensus 215 l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTEEEEEETTTTE
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 8888899999999999975
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.49 E-value=0.012 Score=58.92 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=94.3
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEECC-CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-------CCcEEEE
Q 004679 56 ISWNSKGSLLISGS-----DDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF 122 (737)
Q Consensus 56 l~~s~~g~~lasgs-----~dg~V~vwd~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-------dg~I~iw 122 (737)
-.||+||++|++.- ..|.|-|||.. +-+.+..+ ..|.-.-..+.+.|+ +..|+.+-. .|.-++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL- 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL- 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence 46999999999863 45889999999 66778888 677777888999999 666666521 122222
Q ss_pred ecCCCCCCC--CCCCCCCCc--eee--ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 123 NLSRFSGRG--LDDNAITPS--ALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 123 d~~~~~~~~--~~~~~~~~~--~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
++.+.+... .+...-+.+ ..+ ..|...|..+++.+ ++..++..=..| ......+ .
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~~~~~P-----------L 192 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DPGDAPP-----------L 192 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCC-------CCCccCC-----------e
Confidence 111111000 000000111 123 23566777777776 333333222211 1111110 1
Q ss_pred EEeccCCceeeccCC-----CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 197 LLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
+.-.+.+........ ......+-+|++++++....+|+=..+.+.+||..++..+..
T Consensus 193 va~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 193 VALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 111111111111111 123467889999997533445555778999999999876544
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0098 Score=64.45 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=89.4
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
|...|.--+++..+++|+.|+.-|.|.+|+-..++....-..+-...+..+..+++ ..++|.|+..|.|.++.++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence 44455555667788999999999999999988776543321233455566667777 5888999999999999988632
Q ss_pred CCCCCCCCCCCce-eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 129 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
.... ..+. .-+.|...|++++|++ ++..+++|..-|.|.+-.+..
T Consensus 110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 2110 1111 1223788999999999 668888999999999988877
No 324
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00033 Score=46.12 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=34.3
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd 78 (737)
++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677788999999999999999999999999999996
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.37 E-value=0.026 Score=64.96 Aligned_cols=212 Identities=10% Similarity=0.076 Sum_probs=128.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC--CCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RFS 128 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~--~~~ 128 (737)
+.|.++.|..+++-++.+..+|.|.+-|.++...... ..-...|.+++|+|+ +..++..+.++++.+=+-. ...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence 5899999999999999999999999999887653322 234688999999999 7888888887777663321 000
Q ss_pred CCCC--CCC-CCCC--------ceeec------------------c---CCCceeEEEEecCCCcEEEEE-----eCCCc
Q 004679 129 GRGL--DDN-AITP--------SALYQ------------------C---HTRRVKKLAVEVGNPHVVWSA-----SEDGT 171 (737)
Q Consensus 129 ~~~~--~~~-~~~~--------~~~~~------------------~---h~~~v~~l~~~p~~~~~l~s~-----s~Dg~ 171 (737)
.+.. +.. ..+. ...+. + ..+.=++|.|.- ++.++++. ...+.
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence 0000 000 0000 00000 0 111224588876 66788773 22379
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE---eCCCcEEEEECCCC
Q 004679 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRML 248 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~---s~Dg~i~iwd~~~~ 248 (737)
|++||-. +.... . .......-.+++|-|. |.++++- .+|+.|.+|..+..
T Consensus 224 irV~drE-g~Lns-----------------------~--se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 224 IRVYDRE-GALNS-----------------------T--SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EEEeccc-chhhc-----------------------c--cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence 9999976 33110 0 0011223357889996 5777765 34667989977643
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE---EeCCCeEEEEEcCCCC
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG 312 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~---g~~dg~v~iwd~~~~~ 312 (737)
.. ..+..+. ..... .|..++|+.++..|++ ......|++|-+.+-.
T Consensus 277 ~h-g~f~l~~----------------p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 277 RH-GEFVLPF----------------PLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cc-cccccCC----------------ccccc-chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 21 1110000 00111 3889999999999888 4445569999887743
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00025 Score=77.69 Aligned_cols=188 Identities=20% Similarity=0.170 Sum_probs=120.6
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004679 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
....| ..|+...+|++|+-+ .+.|+.|+..|.|++|++.++.. .....+|.+.|+-+.-+.++...|
T Consensus 1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceee
Confidence 34455 678899999999998 69999999999999999987543 456778999999999888555555
Q ss_pred EEEeCCC-cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004679 164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 164 ~s~s~Dg-~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
.+++... -..+|++...... .. ....-.++.|+.. .+.-+.|..-....+
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~------------------------~H----sf~ed~~vkFsn~-~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP------------------------RH----SFDEDKAVKFSNS-LQFRALGTEADDALL 1210 (1516)
T ss_pred eeccccCchHHHhccccccCc------------------------cc----cccccceeehhhh-HHHHHhcccccceEE
Confidence 4444443 5678988763211 00 0123356777765 344445555567889
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004679 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 322 (737)
||+.+..++.++..+.- ...+.-+++.|+|+..+++- || .+||++.......+-...
T Consensus 1211 YDvqT~~~l~tylt~~~-----------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft- 1267 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDTV-----------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT- 1267 (1516)
T ss_pred EecccCcHHHHhcCcch-----------------hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe-
Confidence 99999887655432110 11112366889999887653 33 579999864333322211
Q ss_pred CCeeeeeccCCCCc
Q 004679 323 ASKIMSFTPTLNGL 336 (737)
Q Consensus 323 ~~~~~~~~p~~~~~ 336 (737)
....-.|+|.+..+
T Consensus 1268 ~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEV 1281 (1516)
T ss_pred ecccccccCCCceE
Confidence 22223467765544
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0019 Score=70.73 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
+++++|+|..-.|+.|-.-|.+.+|...+.+.- +....|..+|..+.|+|+ |..++++..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 567999999999999999999999998776544 443789999999999999 89999999999999998874
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.039 Score=61.28 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=110.7
Q ss_pred cccccceeecccCCc-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC------eEE--EEEc----ccCccceEEE
Q 004679 38 RRLSQERELEGHQGC-VNAISWNSKGSLLISGSDDTH-----INVWSYSSR------KLL--HSIE----TGHSANVFCT 99 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~-V~~l~~s~~g~~lasgs~dg~-----V~vwd~~~~------~~~--~~~~----~~h~~~V~~v 99 (737)
++++..+.|+.+... |..+-.-.+..+|++-+.|+. |+||+++.. +++ +.+. .....++.++
T Consensus 52 ~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l 131 (933)
T KOG2114|consen 52 SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSL 131 (933)
T ss_pred ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEE
Confidence 555666778888777 444443334478888877655 899999753 222 1110 1235788999
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+.+.+ -..+|.|-.||.|..+.-.-...+. ........-..+|+.+++..+....++++. ...|.+|.+..
T Consensus 132 ~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrg------sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~g 202 (933)
T KOG2114|consen 132 AVSED--LKTIVCGFTNGLVICYKGDILRDRG------SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSG 202 (933)
T ss_pred EEEcc--ccEEEEEecCcEEEEEcCcchhccc------cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecC
Confidence 99998 6889999999999998644221111 112223335679999999875544343443 35799999884
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
.. + .......+...++|..|++..++ +++++ +..+.+||.....
T Consensus 203 r~-p-----------------------~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 203 RT-P-----------------------SLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CC-c-----------------------ceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence 33 1 11112235567889999986433 44443 4679999887443
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.034 Score=46.42 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=70.1
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 53 V~~l~~s~---~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
|++|++.. +| +.|+.|+.|..||||+-+ +.+..+ .-.+.|+++.-... ..|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 67777765 33 579999999999999854 556666 24577888877765 68999999999999986531
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCC---CcEEEEEeCCCcEE
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR 173 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~l~s~s~Dg~I~ 173 (737)
+...+. ...++++.+...+ -.-|++|-.+|.|-
T Consensus 74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 223332 2336666665422 23677888888774
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0038 Score=66.69 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceE-EEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++ ..+...++ +++|.|+ |++|+.|-.||+|++.|+..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCCc
Confidence 467789999999999999999999999988 7788888 56777777 9999999 89999999999999999987543
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEec
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEV 157 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p 157 (737)
.. .........|.++.|.+
T Consensus 97 l~---------~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LV---------SFLFSVETDISKGIWDR 115 (665)
T ss_pred ee---------ccccccccchheeeccc
Confidence 21 11223455677788864
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.12 Score=49.59 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEE-EEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v-~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
|++++.|...|.+.+.+..+|.....+.. .+.|.+- ...++ +.++..|+.|+..+..|.++
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee--hhhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence 56789999999999999999988877732 2333332 24455 68999999999999988875
No 332
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.33 Score=47.78 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=114.2
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.+.|-+..|.++.|+|+.+.|++......-.||=...|+.+.++.-..-.....++|.-+ +.++++--.+..+.++.+
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEE
Confidence 355656679999999999999888888888888778899888874333344556778776 567777777899999888
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC--CCCCCCCccceEEEeccC
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--PAGSSHQECRNILLDLRC 202 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~--~~~~~~~~~~~~~~~~~~ 202 (737)
........-....-++..........-.++|+|.+ +.|+.+-.-.-+.+|.+......- .....+......
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~------ 230 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL------ 230 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccce------
Confidence 75432211011011122222224556789999966 445455566677777776443110 000000000000
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.-..+.++.|++..+.+++-+..++.+.-.|...
T Consensus 231 -----------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 -----------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred -----------EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 0134667888887777888888888888887763
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.73 E-value=0.08 Score=56.27 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=116.9
Q ss_pred ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-c------cCccceEEEEEee---CCC
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---ETS 106 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~------~h~~~V~~v~~sp---~~~ 106 (737)
-+.+.+..-++...++|++++.| |=-++|.|..+|.+.|.|++....+..-. . .....|+++.|.- ..+
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 44567777788789999999997 66799999999999999998777665521 1 1345688898883 211
Q ss_pred C---CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE-EecCC--------------------CcE
Q 004679 107 D---ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN--------------------PHV 162 (737)
Q Consensus 107 ~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~p~~--------------------~~~ 162 (737)
+ -++++|...|.+.+|.+.-..... ...+.......+.++|..|. ++.+. ..+
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~---f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGR---FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG----EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCc---eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 2 368889999999999886211111 00111222224556665554 22110 124
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe----cCCCcEEEEEeCCC
Q 004679 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDA 238 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~t~s~Dg 238 (737)
++.++ +..++++..-+.+.. ...+ ........+.+- ...+..|++-..+|
T Consensus 229 vVvvS-e~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G 282 (395)
T PF08596_consen 229 VVVVS-ESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLFNNG 282 (395)
T ss_dssp EEEE--SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred EEEEc-ccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEECCC
Confidence 43443 567888887765421 0000 111223333442 11246788888999
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004679 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
.|++|.+...+.+........ -....+...+++++|+.++..+.. .+.++.+-
T Consensus 283 ~i~i~SLP~Lkei~~~~l~~~-----------------~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 283 SIRIYSLPSLKEIKSVSLPPP-----------------LDSRRLSSSSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp EEEEEETTT--EEEEEE-SS--------------------HHHHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred cEEEEECCCchHhhcccCCCc-----------------cccccccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence 999999998877655432100 001124557789999977666554 44444443
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=0.67 Score=49.92 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=45.6
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 56 l~~s~~g~~lasgs~d----------g-~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
++.+|.|..+|....+ . .|.||+.. |+.+.++.- ..+.|.++.|+.+ ..|+....||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w-~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPW-DSGRIVGMGWTDD---EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEE-CCCCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence 4455655555555333 2 48999965 455666632 3389999999886 56777789999999998
Q ss_pred C
Q 004679 125 S 125 (737)
Q Consensus 125 ~ 125 (737)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 6
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.51 E-value=0.22 Score=49.20 Aligned_cols=191 Identities=17% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCcEEEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004679 71 DTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
+|+|..||..+|+.+....... .....+..+. . +..+++++.++.|..||..++.. +..... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~~~l~~~d~~tG~~----------~W~~~~-~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-D--GGRVYVASGDGNLYALDAKTGKV----------LWRFDL-PGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-E--TTEEEEEETTSEEEEEETTTSEE----------EEEEEC-SSC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-e--CCEEEEEcCCCEEEEEECCCCCE----------EEEeec-ccc
Confidence 6899999999999988873211 1222222232 3 46777778999999999976432 222221 121
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec-cCCceeeccCCCCCccceEEEEEecCCC
Q 004679 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTRP 228 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (737)
+....... + ..++.++.++.+..+|..+++. +|.. ... .............+. +
T Consensus 68 ~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~------~~~~~~~~~~~~~~~---~ 122 (238)
T PF13360_consen 68 ISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTS------SPPAGVRSSSSPAVD---G 122 (238)
T ss_dssp GGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-S------SCTCSTB--SEEEEE---T
T ss_pred ccceeeec-c-cccccccceeeeEecccCCcce--------------eeeecccc------ccccccccccCceEe---c
Confidence 11111111 3 4455666888999999988873 2321 110 000001111222333 3
Q ss_pred cEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004679 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
..++++..++.|..+|+++++.+........+... . . .....+..-....++ .++++..++.+..+|+
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~-----~----~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS--P-----I----SSFSDINGSPVISDG-RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------E----EEETTEEEEEECCTT-EEEEECCTSSEEEEET
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc--c-----e----eeecccccceEEECC-EEEEEcCCCeEEEEEC
Confidence 57888888999999999999876555332111000 0 0 000012222222344 7888888886444499
Q ss_pred CCCC
Q 004679 309 NHAG 312 (737)
Q Consensus 309 ~~~~ 312 (737)
.+++
T Consensus 191 ~tg~ 194 (238)
T PF13360_consen 191 ATGE 194 (238)
T ss_dssp TTTE
T ss_pred CCCC
Confidence 8865
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.47 E-value=0.016 Score=63.90 Aligned_cols=110 Identities=10% Similarity=0.177 Sum_probs=81.7
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 54 NAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 54 ~~l~~s~~g~~lasgs~----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
+-.+|+|...++|.++- -|.|.||- ++|++.... ...-.+++++|+|. .-.|+.|=.-|.+.+|.......
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCcee
Confidence 34679999999988763 57888885 556543322 22344678999998 56777887789999998875321
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
-.....|..+|..+.|++ ++..++++..-|.|.+|....
T Consensus 94 ----------htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 ----------HTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ----------eeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 223456999999999999 568888999999999998764
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.43 E-value=0.47 Score=49.32 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=76.9
Q ss_pred EEcCCCCEE-EEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004679 57 SWNSKGSLL-ISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 57 ~~s~~g~~l-asgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 133 (737)
+|.++|+.| +.+..|| .+.+.|+.+++..+-- .+.........++|+ .+.++-...+..|+-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e~---- 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLEE---- 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--E----
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCcE----
Confidence 467788655 4554454 4666688888765543 222233335667787 46666665667888888886432
Q ss_pred CCCCCCceeeccCCCceeEEEEec-CCCcEEEEEeCCCcEEEEEcCCC-CCC------CCCCCCCCccceEEEeccCCce
Q 004679 134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQG-SSC------PPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 134 ~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~vwdl~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
...+......+-...|.. .+...+ .+.. + .+.. ... .........|..+-+++..+..
T Consensus 115 ------~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e-----~--~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 115 ------RVVYEVPDDWKGYGTWVANSDCTKL-VGIE-----I--SREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp ------EEEEE--TTEEEEEEEEE-TTSSEE-EEEE-----E--EGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred ------EEEEECCcccccccceeeCCCccEE-EEEE-----E--eehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 122222344444455542 233333 2211 0 0110 000 0111223456666677777766
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeC---CC-cEEEEECC
Q 004679 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DA-FARLYDRR 246 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg-~i~iwd~~ 246 (737)
..+... ...+.-+.|+|.++.+|+-|-. +. .-|||-++
T Consensus 181 ~~v~~~---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 181 KVVFED---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEEEEE---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred eEEEec---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 555442 3467789999998888777653 22 13566554
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.40 E-value=0.55 Score=54.72 Aligned_cols=212 Identities=8% Similarity=0.094 Sum_probs=119.8
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 172 (737)
...|.++.|.-+ +..++.+..+|.|.+-|..+.. +.....-...|.+++|+| +...++..+.++++
T Consensus 68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSP-DEELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence 368999999998 6888888999999999877532 344444577899999999 66777777776766
Q ss_pred EEEEcCCCCCCCCCCC-CCC----ccceEEEe-----cc--CCce---eeccCCC-----CCccceEEEEEecCCCcEEE
Q 004679 173 RQHDFRQGSSCPPAGS-SHQ----ECRNILLD-----LR--CGAK---RSLADPP-----KQTLSLKSCDISSTRPHLLL 232 (737)
Q Consensus 173 ~vwdl~~~~~~~~~~~-~~~----~~~~~~~~-----~~--~~~~---~~~~~~~-----~~~~~v~~i~~sp~~~~~l~ 232 (737)
.+-+- ...++..... ... ....+-|. ++ .|+. ..+.... .....-+.++|-.+ ++++|
T Consensus 134 l~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA 211 (1265)
T KOG1920|consen 134 LFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA 211 (1265)
T ss_pred EEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence 65432 1221110000 000 00000010 00 0000 0000000 01122345888886 67888
Q ss_pred EE-----eCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEE
Q 004679 233 VG-----GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY 304 (737)
Q Consensus 233 t~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~ 304 (737)
+. ..-..|++||.+ +..-..-. ...+.=.+++|-|.|..+++-.. |+.|.
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se---------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSE---------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccC---------------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence 83 233799999987 33211100 00112456899999998888754 56799
Q ss_pred EEEcCCCCcc--eeeeecC-CCCeeeeeccCCCCccCCCCC
Q 004679 305 LMDVNHAGGR--AMRYTVG-DASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 305 iwd~~~~~~~--~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 342 (737)
+|.-+-...- ....... ..+..++|+-+...++.....
T Consensus 270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred EEecCCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 9985542211 0111122 237889999988888775543
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.36 E-value=0.67 Score=47.30 Aligned_cols=253 Identities=10% Similarity=0.101 Sum_probs=133.7
Q ss_pred cccccccccccccccccceeecc-cCC----ceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004679 26 VNHSLQMHSSLVRRLSQERELEG-HQG----CVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~-H~~----~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~ 98 (737)
-.--|.+||...-..+-...|.+ |.. ....++++.|+++++.. +---.|.|-|+..++.+..+. ...+..
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~---~PGC~~ 141 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID---TPGCWL 141 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE---GTSEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec---CCCEEE
Confidence 34567788843333333334443 122 22346888999987765 445679999999999888773 222223
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
+ -|.. ..-|.+-|.||.+.-..+........ .....+....+++. .-++...++.++ --+.+|.|+-.|+
T Consensus 142 i--yP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~-----~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 142 I--YPSG-NRGFSMLCGDGSLLTVTLDADGKEAQ-----KSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNVYSADL 212 (342)
T ss_dssp E--EEEE-TTEEEEEETTSCEEEEEETSTSSEEE-----EEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEEEEEEE
T ss_pred E--EecC-CCceEEEecCCceEEEEECCCCCEeE-----eeccccCCCCcccccccceECCCCeEE-EEecCCEEEEEec
Confidence 2 3433 35688999999999998885221110 00112222223322 223443233344 4688899999998
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC--C-------CcEEEEECCCC
Q 004679 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-------AFARLYDRRML 248 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~--D-------g~i~iwd~~~~ 248 (737)
...... . ..-|.+.......-.. ..+...-+++++..+.+++.... + ..|.+||+.+.
T Consensus 213 sg~~~~---------~-~~~~~~~t~~e~~~~W---rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 213 SGDSAK---------F-GKPWSLLTDAEKADGW---RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp TTSSEE---------E-EEEEESS-HHHHHTTE---EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred cCCccc---------c-cCcccccCccccccCc---CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence 876521 0 0011111100000000 12233456777754444433211 1 23788899888
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCe
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASK 325 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~ 325 (737)
+.+..+.. ..++.+|.++.+.+ +|++.+ .++.+.+||..+++........+....
T Consensus 280 krv~Ri~l----------------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~ 336 (342)
T PF06433_consen 280 KRVARIPL----------------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPT 336 (342)
T ss_dssp EEEEEEEE----------------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--
T ss_pred eEEEEEeC----------------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCce
Confidence 87666531 11478999998765 666555 479999999999887766665555443
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.34 E-value=0.17 Score=53.54 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=97.3
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 59 s~~g~~lasg---------s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
|||+++++.. +..+.+.|||+.+++..... . ....+....|+|+ |+.++... ++.|.+++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~-~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-P-PPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-C-CccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence 5788777663 22467899999997655433 2 2678899999999 78887775 67899998765322
Q ss_pred CCCCCCCCCCceeeccC---------CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC------------CCCCC
Q 004679 130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS 188 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~------------~~~~~ 188 (737)
......- .-..+.+- -+.-..+-|+|++..+++.--.+..|+.+.+-..... +..+.
T Consensus 76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 1110000 00001111 1223568899966555555556666666554322111 22223
Q ss_pred CCCccceEEEeccCCceeeccCC---CCCccceEEEEEecCCCcEEEEE--eCC---CcEEEEECCCCC
Q 004679 189 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP 249 (737)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~t~--s~D---g~i~iwd~~~~~ 249 (737)
........++++..+....+... ......+..+.|.+++ ..|+.. +.+ -.+.++|..++.
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCc
Confidence 33445555677766665433333 2346678899999974 533333 222 235566666543
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.19 E-value=0.47 Score=46.85 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=97.8
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeC
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
.+-...+..++|+|+. +.++++....+.|...+.. +. .+..+.- -.+..-.|++.. ++.++++.-.
T Consensus 18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G~--------vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er 84 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---GK--------VLRRIPLDGFGDYEGITYLG-NGRYVLSEER 84 (248)
T ss_dssp TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---CC--------EEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence 4455669999999985 5677777778888777764 21 1333221 134567888875 5566666556
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
++.+.++++....... . ...+. ...+.....+...+-.++|+|.. +.|+++-...-.++|.++..
T Consensus 85 ~~~L~~~~~~~~~~~~-------~-~~~~~------~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSL-------D-RADVQ------KISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp TTEEEEEEE----TT----------EEEEE------EEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEEST
T ss_pred CCcEEEEEEecccccc-------c-hhhce------EEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccc
Confidence 8999999985543110 0 00000 00111222344568899999975 45555566666677766541
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcceeeeecC------
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG------ 321 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~------ 321 (737)
..- ....................+..++++|. |.+++.+.....|..+| .+++.........
T Consensus 150 ~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 150 PGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS 218 (248)
T ss_dssp T-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S
T ss_pred cCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc
Confidence 100 00000000000000011113788999995 55566666688999999 4445333333222
Q ss_pred ---CCCeeeeeccCC
Q 004679 322 ---DASKIMSFTPTL 333 (737)
Q Consensus 322 ---~~~~~~~~~p~~ 333 (737)
.....++|.|++
T Consensus 219 ~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDG 233 (248)
T ss_dssp S---SEEEEEE-TT-
T ss_pred cccCCccEEEECCCC
Confidence 245556776654
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.16 E-value=0.32 Score=55.71 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=116.5
Q ss_pred CEEEE-EeCCCcEEEEECCCCeEEEEEcccCc-cceEEEEEee----CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004679 63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVP----ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (737)
Q Consensus 63 ~~las-gs~dg~V~vwd~~~~~~~~~~~~~h~-~~V~~v~~sp----~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 136 (737)
.+|+. ......|.-.|++.|+.+.... .|. .+|..++-.. -. ....+.|-.+..|..||.+........
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~-~~~~~~v~~~~p~~K~aqlt-~e~tflGls~n~lfriDpR~~~~k~v~--- 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWK-VHDDIPVVDIAPDSKFAQLT-NEQTFLGLSDNSLFRIDPRLSGNKLVD--- 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEee-cCCCcceeEecccccccccC-CCceEEEECCCceEEeccCCCCCceee---
Confidence 34443 3456788999999999999984 444 4465553221 11 234566777889999999964321100
Q ss_pred CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004679 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (737)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (737)
.....+ ......+|++-.. ..+||.|+.+|.|++||- .+. ..-..+++-..
T Consensus 569 -~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~------------------------~AKT~lp~lG~ 619 (794)
T PF08553_consen 569 -SQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGK------------------------RAKTALPGLGD 619 (794)
T ss_pred -cccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cch------------------------hhhhcCCCCCC
Confidence 000111 2234456776654 357889999999999992 221 11222344567
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCc------ccccCCCCCCCCccccccccccCC---CCcccceeEE
Q 004679 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV 285 (737)
Q Consensus 217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v 285 (737)
+|.++..+.+ |+++++.+ +..|.+++.. .++.. ..+.....|.+-.....|.|...- +......+..
T Consensus 620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 8999999997 46655544 5678888863 22111 111111112222222333332211 1111124455
Q ss_pred EEcC---CCCEEEEEeCCCeEEEEEcCC
Q 004679 286 TFSP---NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 286 ~~sp---~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|+- .....++++....+.+||++.
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 5652 123455555666999999987
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.023 Score=60.88 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=64.9
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCc
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~ 171 (737)
...|.-+.|+|. -+++|.+..+|.|.+..++- +.+.++.-+...++ +++|.| ++++|+.|-.||+
T Consensus 20 ~~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 20 PINIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT 85 (665)
T ss_pred ccceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence 345778999999 69999999999999998873 33667766777777 999999 5799999999999
Q ss_pred EEEEEcCCCCCC
Q 004679 172 LRQHDFRQGSSC 183 (737)
Q Consensus 172 I~vwdl~~~~~~ 183 (737)
|++.|+.++..+
T Consensus 86 I~L~Dve~~~~l 97 (665)
T KOG4640|consen 86 IRLHDVEKGGRL 97 (665)
T ss_pred EEEEEccCCCce
Confidence 999999998743
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.045 Score=59.58 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=79.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004679 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
...+++.|+.-|.+.+|+-..++.. ..........+..+..++. ..++|.|+..|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~------------------------~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g 98 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMR------------------------KLKNEGATGITCVRSVSSV-EYLVAAGTASG 98 (726)
T ss_pred CCceEEEecccceEEEEecCchhhh------------------------cccccCccceEEEEEecch-hHhhhhhcCCc
Confidence 5689999999999999997766532 1111113445667778886 47999999999
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|.++-++...+- ....+.+.+. .++..|++++|++++..+++|...|+|..-.+.+
T Consensus 99 ~V~v~ql~~~~p~-----------~~~~~t~~d~----~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELPR-----------DLDYVTPCDK----SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCCC-----------cceeeccccc----cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999988764321 1111211111 1244699999999999999999999999988887
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=1.9 Score=46.13 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=127.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCC
Q 004679 53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSG 129 (737)
Q Consensus 53 V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~ 129 (737)
-..+++++.+. ..++...++.|.+.|..+.+.......+. ....++++|+. +...++-. .++++.+.|......
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~-~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG-KYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC-CEEEEEecccCCceEEEEeCCCCeE
Confidence 34678888777 55556667899999988877777764333 67789999994 33444444 367888887765321
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
......-..+ ..++++|++...+++-..++.|.+.|........ .. ..
T Consensus 153 ----------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~-------------------~~ 200 (381)
T COG3391 153 ----------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GS-------------------VG 200 (381)
T ss_pred ----------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cc-------------------cc
Confidence 2332222233 8899999665566666688999999966554220 00 00
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCC--CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
..-........+.++|++....++...+ +.+...|..++.....-. ..... ....+.+
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~~ 260 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVAV 260 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCceeE
Confidence 0001122335678888754444544444 588888888765332200 00011 1345789
Q ss_pred cCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004679 288 SPNGEEVLLSYS-GEHVYLMDVNHAGG 313 (737)
Q Consensus 288 sp~g~~l~~g~~-dg~v~iwd~~~~~~ 313 (737)
+|+|.++.+... .+.+.+-|..+...
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 999999999866 48999999888543
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.01 E-value=0.25 Score=54.54 Aligned_cols=165 Identities=8% Similarity=-0.005 Sum_probs=91.9
Q ss_pred EcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---------------------
Q 004679 58 WNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--------------------- 115 (737)
Q Consensus 58 ~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--------------------- 115 (737)
++|||+.+. +.-..+.+.+.|.++.+...++.- ......++++|+ +.++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence 344565442 233346677888888777766632 224456777777 566555541
Q ss_pred -------------------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004679 116 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 116 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
++.|.+.|.+...... ...+..+ .-......+.++|++..+++++..+.+|.+.|
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 1234444433200000 0112222 23456678999997666666777799999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
+.+.+....... +....+ +..... .......+|.++ ++.+.+-.-|..|-.||+..
T Consensus 350 v~k~k~~~~~~~---~~~~~v----------vaevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKI---KPRDAV----------VAEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccC---CccceE----------EEeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 988653210000 000000 111111 223345688886 57888889999999999875
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.01 E-value=0.35 Score=40.56 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=65.7
Q ss_pred eEEEEEeeCCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004679 96 VFCTKFVPETS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 96 V~~v~~sp~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
|+++++..-.. .+.|+.|+.|..|++|+-.. .+..+. -.+.|+++.-.. ...|+.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEE
Confidence 56666665221 36899999999999998663 234443 456677777665 36788899999999
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec---CCCcEEEEEeCCCcEE
Q 004679 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFAR 241 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~~l~t~s~Dg~i~ 241 (737)
+|+-... +|-.+. +..+.++++.. ++...|++|-.+|.|-
T Consensus 67 vY~~~~R----------------lWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQR----------------LWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcce----------------eeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9975322 222111 12345555443 3334789998888774
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.01 E-value=0.021 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~ 84 (737)
...|.+++|+|...+||.|..+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 4443
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.94 E-value=0.32 Score=52.35 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=100.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCcc------ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004679 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~------~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 136 (737)
..++.++.+|.+..+|..+|+.+......... ....+.-+|--.+..++.++.+|.+..+|..+++..
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------ 279 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------ 279 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------
Confidence 34666777888998999888876654211100 011111122101356777778999999998864321
Q ss_pred CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004679 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (737)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (737)
.... ......+.. .+..++.++.+|.+..+|..+++. +|..... . ..
T Consensus 280 ----W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~---------~-~~ 326 (394)
T PRK11138 280 ----WKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE--------------LWSQSDL---------L-HR 326 (394)
T ss_pred ----Eeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCcE--------------EEccccc---------C-CC
Confidence 1111 111112222 234566778899999999988762 2211100 0 00
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE
Q 004679 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (737)
Q Consensus 217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~ 296 (737)
...+.... +..+++++.||.|.++|..+++.+...... ... ......+ .+..|++
T Consensus 327 ~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~~-~~s~P~~--~~~~l~v 381 (394)
T PRK11138 327 LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SSG-FLSEPVV--ADDKLLI 381 (394)
T ss_pred cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CCc-ceeCCEE--ECCEEEE
Confidence 01111122 247888999999999999988755433110 000 0111112 3457999
Q ss_pred EeCCCeEEEEEc
Q 004679 297 SYSGEHVYLMDV 308 (737)
Q Consensus 297 g~~dg~v~iwd~ 308 (737)
++.||.|+.++.
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 999999998864
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.48 Score=51.02 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=71.4
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs---~d-g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
..+..-...+..=+|+|++..++--. .. ..+.++|+.+++...... ....-..-+|+|++ ..++++...||..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~~ 262 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGSP 262 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCCc
Confidence 33443445677778999988765432 22 469999999887554441 23334456799994 4445566667776
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
.||-+...... ...+..-.+.-+.=.|+|++..+.++.+..|.-.+|-..
T Consensus 263 ~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 263 DIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred cEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 66544432221 112222222223567899776677777777765555433
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.88 E-value=1.3 Score=45.16 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=43.7
Q ss_pred EEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEE-ecCCcEEEEcCCCCCCccccC
Q 004679 651 WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATS-GIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 651 i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~-~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
|-++|+.|++.+.++..- .++.+|+.+.|.+ +|+.. ..|+.|.+||..+++.+..+.
T Consensus 271 VWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 345688899999999852 3688999999875 77655 468999999999999888765
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.2 Score=54.03 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=77.6
Q ss_pred CccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004679 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 92 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 171 (737)
.......+.++|+ +.+++. +.||.-.|+.... ... ...+....+.|.+ . ..+|+-...+.
T Consensus 31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~ 90 (443)
T PF04053_consen 31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST 90 (443)
T ss_dssp -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence 3455789999999 677777 4578888887432 121 1234456788988 4 34666666888
Q ss_pred EEEE-EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 172 LRQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 172 I~vw-dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
|.++ ++...... .+. ....+.. +.+ |.+|+..+.+ .|.+||..+++.
T Consensus 91 I~I~kn~~~~~~k-----------------------~i~----~~~~~~~--If~--G~LL~~~~~~-~i~~yDw~~~~~ 138 (443)
T PF04053_consen 91 IKIYKNFKNEVVK-----------------------SIK----LPFSVEK--IFG--GNLLGVKSSD-FICFYDWETGKL 138 (443)
T ss_dssp EEEEETTEE-TT--------------------------------SS-EEE--EE---SSSEEEEETT-EEEEE-TTT--E
T ss_pred EEEEEcCccccce-----------------------EEc----CCcccce--EEc--CcEEEEECCC-CEEEEEhhHcce
Confidence 9996 33222100 000 0011222 222 4566666554 899999999887
Q ss_pred cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+..+.. . +|..|.|+++|.+++..+.+ .++|++...
T Consensus 139 i~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 139 IRRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eeEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 766531 1 37899999999999999876 777776554
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.74 E-value=0.74 Score=47.98 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=107.9
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCC-----CCCEEEEEEC----------CCcEEEEecCCC-CCCCCCCCC
Q 004679 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAG----------DAEVRLFNLSRF-SGRGLDDNA 136 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~-----~~~~l~sgs~----------dg~I~iwd~~~~-~~~~~~~~~ 136 (737)
.|++.|..+.+.+..+.......+++++...-. ...+|+.|.. .|.|.++++... ... ..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~----~~ 78 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN----FK 78 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------E
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc----eE
Confidence 588999888887777644445566666544311 0367777753 288999999863 100 01
Q ss_pred CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004679 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (737)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (737)
.+.+.. ....++|++++-- ++.++ .+ ..+.|.+|++...+.. ........ ..
T Consensus 79 l~~i~~-~~~~g~V~ai~~~--~~~lv-~~-~g~~l~v~~l~~~~~l----------------------~~~~~~~~-~~ 130 (321)
T PF03178_consen 79 LKLIHS-TEVKGPVTAICSF--NGRLV-VA-VGNKLYVYDLDNSKTL----------------------LKKAFYDS-PF 130 (321)
T ss_dssp EEEEEE-EEESS-EEEEEEE--TTEEE-EE-ETTEEEEEEEETTSSE----------------------EEEEEE-B-SS
T ss_pred EEEEEE-EeecCcceEhhhh--CCEEE-Ee-ecCEEEEEEccCcccc----------------------hhhheecc-eE
Confidence 112222 2357889988876 33444 33 3478999999887611 01111111 12
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEE
Q 004679 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (737)
Q Consensus 217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~ 295 (737)
.+.++... ++++++|..-..+.++..+.. ..+..+. ......+++++.|-++++.++
T Consensus 131 ~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 131 YITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred EEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence 45555555 358999988888888855431 1111111 111122588999987777899
Q ss_pred EEeCCCeEEEEEcCC
Q 004679 296 LSYSGEHVYLMDVNH 310 (737)
Q Consensus 296 ~g~~dg~v~iwd~~~ 310 (737)
++..+|.+.++....
T Consensus 189 ~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEETTSEEEEEEE-S
T ss_pred EEcCCCeEEEEEECC
Confidence 999999999999874
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.74 E-value=0.027 Score=39.24 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCceEEEEecCCCCeEEEEecCCcEEEEcCC
Q 004679 669 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 699 (737)
Q Consensus 669 ~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~ 699 (737)
..+|.+++|+|...+||.+..||.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999984
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.74 E-value=1.5 Score=46.81 Aligned_cols=119 Identities=11% Similarity=0.116 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------------------E-----------------Ec
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------------------S-----------------IE 89 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-------------------------~-----------------~~ 89 (737)
.|+.|.|+++..-|+.|...|.|.||.+...+.-. . +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999988889999999999998764321110 0 01
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee---eccCCCceeEEEEec----CCC--
Q 004679 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEV----GNP-- 160 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~p----~~~-- 160 (737)
....++|++++.+.- -+++.|..+|.+.|.|++.+.-... ..+.. -......++++.|.- +++
T Consensus 83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI~~-----~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVIYN-----ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEEEE-----EEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEEee-----ccccccccccccccCeeEEEEEEEecCCCccc
Confidence 234689999999865 5999999999999999985321100 00000 112345688888862 122
Q ss_pred -cEEEEEeCCCcEEEEEcC
Q 004679 161 -HVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 161 -~~l~s~s~Dg~I~vwdl~ 178 (737)
-.+++|...|.+.+|.+.
T Consensus 155 Si~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEETTSEEEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEe
Confidence 377889999999999885
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.71 E-value=0.93 Score=47.25 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=89.2
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC-----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 62 GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 62 g~~lasgs~----------dg~V~vwd~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
..+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.+. ++.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEee-cCEEEEEEccC
Confidence 467777743 288999999884 322222234578899988663 34 44443 58999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004679 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
... +.+...+. ....+.++.... ++++.|.....+.++..+..... + .
T Consensus 117 ~~~-------l~~~~~~~-~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~-------------l--------~ 164 (321)
T PF03178_consen 117 SKT-------LLKKAFYD-SPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNK-------------L--------I 164 (321)
T ss_dssp TSS-------EEEEEEE--BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE--------------E--------E
T ss_pred ccc-------chhhheec-ceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCE-------------E--------E
Confidence 431 11122222 223666666653 58888988889998866542100 0 0
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.+.. ......++++.|-+++ +.++++..+|.+.++....
T Consensus 165 ~va~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 165 LVAR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred EEEe-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 0111 1124568889998764 6999999999999998863
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.67 E-value=2.7 Score=44.39 Aligned_cols=91 Identities=10% Similarity=0.122 Sum_probs=52.1
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC-------------
Q 004679 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------------- 92 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h------------- 92 (737)
....+-+++...+..++ +......+....|||+|+.+|-.. ++.|.+++..+++..+.-..+.
T Consensus 21 ~~~~y~i~d~~~~~~~~---l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITP---LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEEETTTTEEEE---SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred cceeEEEEecCCCceEE---CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 34455556633333222 222256788999999999998886 4789999988775443221120
Q ss_pred ---ccceEEEEEeeCCCCCEEEEEECC-CcEEEE
Q 004679 93 ---SANVFCTKFVPETSDELVVSGAGD-AEVRLF 122 (737)
Q Consensus 93 ---~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iw 122 (737)
-..-..+.|||+ +++|+....| ..|..+
T Consensus 97 EEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEY 128 (353)
T ss_dssp HHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EE
T ss_pred ccccccccceEECCC--CCEEEEEEECCcCCceE
Confidence 112356889999 6777766443 444433
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.66 E-value=3.4 Score=44.75 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC---------
Q 004679 52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------- 117 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasg-s~d----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--------- 117 (737)
.+..+++||+|++||-+ +.. ..|+++|+.+++.+.... .......+.|.++ ++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence 34467899999988854 333 449999999998765331 1222234999999 56665554333
Q ss_pred --cEEEEecCCCCCCCCCCCCCCCceeeccCCCc--eeEEEEecCCCcEEEEEeCCC---cEEEEEcCCC
Q 004679 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 180 (737)
Q Consensus 118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~ 180 (737)
.|+.|.+.+..... ...+...... ...+..++++..+++...... .+.+.|+...
T Consensus 201 ~~~v~~~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 26777776533210 1223322222 567888885544444444433 3777777764
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.48 E-value=0.55 Score=53.83 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=88.3
Q ss_pred ccccccccccccceeecccCCc-eEEEEEcCC-------CCEEEEEeCCCcEEEEECCCCe--EEEEE--cccCccceEE
Q 004679 31 QMHSSLVRRLSQERELEGHQGC-VNAISWNSK-------GSLLISGSDDTHINVWSYSSRK--LLHSI--ETGHSANVFC 98 (737)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~H~~~-V~~l~~s~~-------g~~lasgs~dg~V~vwd~~~~~--~~~~~--~~~h~~~V~~ 98 (737)
++|..-+.+++.+.++.-|... |..+ .|+ ....+.|-.+..|..||.+-.. ++..- .........|
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 5677778999999999988754 5554 453 3356678788899999987532 33211 0123345667
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
++-..+ .+||.|+.+|.|++||--.. ..-..+.+...+|..|..+.++ +++++.+ +..+.+++..
T Consensus 583 ~aTt~~---G~iavgs~~G~IRLyd~~g~----------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 583 FATTED---GYIAVGSNKGDIRLYDRLGK----------RAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEecCC---ceEEEEeCCCcEEeecccch----------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence 766655 58999999999999994311 1123455678999999999954 5553333 4678888864
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.68 Score=49.85 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=107.5
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE-C--C-CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004679 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-G--D-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~--d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (737)
.+.+=|.+ +.....+ ..-...+..-+|+|+ +..++... . . ..+.++++..+.... +..+.++.
T Consensus 174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~~- 240 (425)
T COG0823 174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGNN- 240 (425)
T ss_pred eEEEEccC-CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccce--------eeccCCcc-
Confidence 34444444 4444444 344566777889999 45443332 2 2 358889998754322 33333333
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004679 149 RVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
..-+|+|++..++++...||...+| |+...... .+....+ .-..=.|+|+
T Consensus 241 --~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~g---i~~~Ps~spd 292 (425)
T COG0823 241 --GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFG---INTSPSWSPD 292 (425)
T ss_pred --CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCc---cccCccCCCC
Confidence 4468999887788888888865554 55554311 0111111 1113468898
Q ss_pred CCcEEEEEeCCCcEEEE--ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-Ce-
Q 004679 227 RPHLLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH- 302 (737)
Q Consensus 227 ~~~~l~t~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g~- 302 (737)
+..++++.+..|.-.|| |+..... ..+.. .+. .-..-.|+|||++|+..+.. |.
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~------------------~~~---~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF------------------SGG---GNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCce-eEeec------------------cCC---CCcCccCCCCCCEEEEEeccCCce
Confidence 65566666666765555 4443322 11100 001 11256799999999888853 44
Q ss_pred -EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004679 303 -VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 303 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
|.+.|+.++.. .............++.|+...+.+
T Consensus 351 ~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 351 DIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred eeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 67777766543 222223333333445555444333
No 361
>PHA02713 hypothetical protein; Provisional
Probab=95.01 E-value=1.3 Score=49.88 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCC--eEEEEEcCCCC
Q 004679 290 NGEEVLLSYSGE--HVYLMDVNHAG 312 (737)
Q Consensus 290 ~g~~l~~g~~dg--~v~iwd~~~~~ 312 (737)
+|+..++|+.++ .+..||+.+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 778888888887 77788877743
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=6.3 Score=42.11 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=132.5
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
....+...+++..+. +-.....+.+.+.......... ......-..++.++.. ...++....+..|.+.|......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTV- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccce-
Confidence 445677888885433 3322235555555522222212 1111445677888884 33566666679999999664221
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
..... -......++++|++..+.++-. .++++.+.|-.+.+... . ..
T Consensus 109 ---------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~------- 157 (381)
T COG3391 109 ---------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IP------- 157 (381)
T ss_pred ---------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Ee-------
Confidence 22221 1225678999996655555555 36888888877765320 0 11
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
....+ ..++++|++...+++-..++.|.++|........ -. . .... .....-..+.++
T Consensus 158 ----vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~------------~~~~---~~~~~P~~i~v~ 215 (381)
T COG3391 158 ----VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-V------------GSLV---GVGTGPAGIAVD 215 (381)
T ss_pred ----cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-c------------cccc---ccCCCCceEEEC
Confidence 11112 7889999864455555688999999976554331 00 0 0000 001124568999
Q ss_pred CCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCC-CCeeeeeccCCCCccCC
Q 004679 289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGLELQ 339 (737)
Q Consensus 289 p~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~ 339 (737)
|+|.++.+.... +.+...|..++.........+. ....+.+.|.+......
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence 999988777764 5899999888654444233322 55667777776554443
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.83 E-value=6.9 Score=42.21 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=29.2
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004679 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
.++..|++||+ ++.+|.-..+|.+.+.+....+.+..
T Consensus 217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred CCeEEEEECCC-CCEEEEEECCCCEEEEECcccceeEE
Confidence 57899999997 58999999999999998765544333
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=4.1 Score=40.09 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=123.9
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcE-EEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECC-----CcEEEEec
Q 004679 53 VNAISWNSK-GSLLISGSDDTHI-NVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNL 124 (737)
Q Consensus 53 V~~l~~s~~-g~~lasgs~dg~V-~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~ 124 (737)
-..|+|+|. ..-++-+-.-|+. .++|..+.+....+.... ...--.-.|+|+ |.+|...-.| |.|-|||.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence 346788885 4456666666664 688998877665542110 111223459999 6777665433 78999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE-EcCCCCCCCCCCCCCCccceEEEeccCC
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw-dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+..- ..+..+..|.-....+.|.+ ++..++.+ +|-|... |....+.. ....+....+.+-.++
T Consensus 148 r~~f---------qrvgE~~t~GiGpHev~lm~-DGrtlvva--nGGIethpdfgR~~lN----ldsMePSlvlld~atG 211 (366)
T COG3490 148 REGF---------QRVGEFSTHGIGPHEVTLMA-DGRTLVVA--NGGIETHPDFGRTELN----LDSMEPSLVLLDAATG 211 (366)
T ss_pred cccc---------ceecccccCCcCcceeEEec-CCcEEEEe--CCceecccccCccccc----hhhcCccEEEEecccc
Confidence 8532 33566777877788899999 55666554 3556655 33222211 1122334455555555
Q ss_pred ceeeccCCC--CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004679 204 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 204 ~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
........+ .+...+..++..++ +..++.+-..|. .....-+.....+...+..+...... ...-...
T Consensus 212 ~liekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~--------~~d~ppLvg~~~~g~~l~~~~~pee~-~~~~anY 281 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGP--------RNDLPPLVGHFRKGEPLEFLDLPEEQ-TAAFANY 281 (366)
T ss_pred chhhhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCC--------CccCCcceeeccCCCcCcccCCCHHH-HHHHHhh
Confidence 554444444 45566777777775 333333222111 00000011111111111111100000 0001113
Q ss_pred eeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004679 282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG 313 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~ 313 (737)
|-+++.+.+..+++..+- .+...+||..++..
T Consensus 282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred hhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 778888876666666666 56788999999763
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.66 E-value=1.1 Score=49.71 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEE
Q 004679 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~ 295 (737)
.....+.++|++...++++..+.++.|+|+.+.+..- .....+..++..- -.-+..-...+|+++|....
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~~~~~~vvae--------vevGlGPLHTaFDg~G~ayt 390 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKIKPRDAVVAE--------PELGLGPLHTAFDGRGNAYT 390 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccCCccceEEEe--------eccCCCcceEEECCCCCEEE
Confidence 3456789999865556666679999999998765311 0000110111000 00011244578999998777
Q ss_pred EEeCCCeEEEEEcCC
Q 004679 296 LSYSGEHVYLMDVNH 310 (737)
Q Consensus 296 ~g~~dg~v~iwd~~~ 310 (737)
+-.-|..|..||+.+
T Consensus 391 slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLFLDSQIVKWNIEA 405 (635)
T ss_pred eEeecceeEEEehHH
Confidence 777799999999987
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.32 E-value=0.13 Score=48.61 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
-+..+++|+.+|.|.+|....-.........-...|.++--.-+. +.+..+++.||.|+.|++..... +
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~-~~~~c~~~~dg~ir~~n~~p~k~----------~ 137 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD-SSLGCVGAQDGRIRACNIKPNKV----------L 137 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc-cceeEEeccCCceeeeccccCce----------e
Confidence 345788999999999999873211111111223344444333332 56889999999999999885321 3
Q ss_pred eeeccCC-CceeEEEEecCCCcEEEEE--eCCCcEEEEEcCCCC
Q 004679 141 ALYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGS 181 (737)
Q Consensus 141 ~~~~~h~-~~v~~l~~~p~~~~~l~s~--s~Dg~I~vwdl~~~~ 181 (737)
.....|. .++....... ...+++.+ |.|..++.|++....
T Consensus 138 g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhhh
Confidence 3333454 3444444444 33555565 667777777776543
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.29 E-value=5.2 Score=45.13 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=91.4
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004679 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
..+..|+...+.......+..... -.++++. ++.+.++|+.| ..+..||..+.+-.. + .....+=.....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~-a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-V-APMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-c-CCccCcccccee
Confidence 445555544444444444442222 3344443 45788889888 346678887766433 2 111111112222
Q ss_pred eeCCCCCEEEEEECCCc-----EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC------
Q 004679 102 VPETSDELVVSGAGDAE-----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------ 170 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg------ 170 (737)
..-. |.+.+.|+.||. |-.||..+.. +..+..+.. .........-++.+.+.||.++
T Consensus 377 ~~l~-g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 377 AVLD-GKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred EEEC-CEEEEEeccccccccccEEEecCCCCc--------ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 2221 678899998865 5566666422 333333332 2222222222668888888665
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc-----EEEEEC
Q 004679 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDR 245 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-----i~iwd~ 245 (737)
++..||..+..- ..+........... ++.- ++.++++|+.|+. |..||.
T Consensus 445 sve~YDP~t~~W-----------------------~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 445 SVECYDPETNTW-----------------------TLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred eEEEEcCCCCce-----------------------eecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcC
Confidence 455666665541 11222221111222 3332 3578888988873 666777
Q ss_pred CCCC
Q 004679 246 RMLP 249 (737)
Q Consensus 246 ~~~~ 249 (737)
.+.+
T Consensus 499 ~~~~ 502 (571)
T KOG4441|consen 499 ETNQ 502 (571)
T ss_pred CCCc
Confidence 7544
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.06 E-value=7.5 Score=39.27 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=86.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004679 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
..++.|+.|..+| |.+++.........+ .+...|..+...|+ -+.|+.-+ |+.+.++++..............+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4678999999988 899998333222222 13344999999998 35555554 599999999864332210000000
Q ss_pred c----eeeccCCCceeEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004679 140 S----ALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 140 ~----~~~~~h~~~v~~l~--~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
. .........+...+ -...+...| .....++|.+|.......... ..+. .+ .
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~---------~~~k--------e~----~ 136 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFS---------KLLK--------EI----S 136 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCccccc---------ceeE--------EE----E
Confidence 0 00111223344443 112233344 444456899998876421100 0000 01 0
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~ 250 (737)
-...+.+++|.+ +.++.|..++ ..+.|+.++..
T Consensus 137 lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 137 LPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred cCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence 125677888884 4777776544 66888886554
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.18 Score=57.73 Aligned_cols=73 Identities=34% Similarity=0.584 Sum_probs=56.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC-CCEEEEEECCCcEEEEecC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg~I~iwd~~ 125 (737)
.++|++++|+.+|.+++.|-.+|.|.+||+..++..+.+ ..|..+.+++-+.-..+ +..++++...|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 579999999999999999999999999999999988888 66766666554443211 356888877776 56554
No 370
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.62 E-value=1.9 Score=48.16 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
..+.-+.-|.-++..+.-+....+.|||...+...........+.|.++.|....+++.+++.+..+.|.++.-...+..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34555555555554444445567999999988755443234578999999998776899999999999999865422111
Q ss_pred CCCCCCCCCceee--ccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004679 131 GLDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 131 ~~~~~~~~~~~~~--~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
. ....+.++..+ ..|+ .+|.+..|.+ ++.+++.++ ..+.++|-
T Consensus 110 ~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 N-KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred c-CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence 1 11112333322 3344 6789999998 545554333 46777763
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.56 E-value=7.7 Score=37.69 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (737)
..+++.|+..+.+.--|..+|..+..- .-...|.+-+.-- |++++.|+..|.+++.+.+++.. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence 457888999999999999999877653 2445566555553 58999999999999999987532 22
Q ss_pred eeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 142 LYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 142 ~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
.+... +.|. .....+ ++.++..|+.|++.+..|.++...
T Consensus 88 ~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 88 NFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred eeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccce
Confidence 22211 1121 223344 568999999999999999988753
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=0.42 Score=54.91 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=72.8
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004679 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
...++.|+..|.+...|++..-. ..........+|++++|+.+ +..++.|-.+|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~ 153 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGH 153 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc------------------------hhhcCCccCCcceeeEecCC-CceeccccCCCc
Confidence 35788888889999999876421 11222334678999999997 689999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeE
Q 004679 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v 303 (737)
|.+||+..++.++.+.. +++....|..+.+..++..++++...|.+
T Consensus 154 V~v~D~~~~k~l~~i~e------------------~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 154 VTVWDMHRAKILKVITE------------------HGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEccCCcceeeeee------------------cCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 99999998776655432 33333346666777777778888777763
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.29 E-value=6.1 Score=41.77 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=25.2
Q ss_pred ceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceee
Q 004679 281 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~ 317 (737)
-|+.+..|.|.++|+.++- +|.|+.||+.....+...
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 4899999999999999888 899999999997655443
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.06 E-value=4.8 Score=45.40 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------CcEEEEecCCC
Q 004679 60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF 127 (737)
Q Consensus 60 ~~g~~lasgs~dg------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~~ 127 (737)
..+.+++.|+.++ .+..+|..+++............-.+++...+ .++++|+.| ..+..||....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence 3456777777763 57788988775443322223344456666654 788999998 34667777653
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 004679 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 181 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-----~I~vwdl~~~~ 181 (737)
+ +..+..+...........+ ++.+.+.|+.|| ++-.||..+.+
T Consensus 360 ~--------W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 360 Q--------WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred c--------eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence 3 2223333332222222222 668888999886 36667766554
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=8.2 Score=41.38 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-----EEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004679 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-----~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
|.++.....|.--|++.|+.+... ..+.. |.-+.+.|+..+..+ +.|-.|..|+-||.+-.... .
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--------k 418 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--------K 418 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--------e
Confidence 445666677888899999999888 44544 777778886422222 34556888999999843221 1
Q ss_pred ceeeccCC----CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004679 140 SALYQCHT----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (737)
Q Consensus 140 ~~~~~~h~----~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (737)
+....+|. ..-.|++-. ...+++.||.+|.|++||- .+.. .-..+|+-.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~------------------------AKTAlPgLG 471 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRR------------------------AKTALPGLG 471 (644)
T ss_pred eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhh------------------------hhhcccccC
Confidence 22222221 122344433 4468889999999999995 3321 122344556
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
.+|..+..+.+ |.++++.+ +..+.+.++.
T Consensus 472 ~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 472 DAIKHVDVTAD-GKWILATC-KTYLLLIDTL 500 (644)
T ss_pred CceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence 78888888886 45554443 6777777765
No 376
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.27 Score=48.59 Aligned_cols=107 Identities=24% Similarity=0.213 Sum_probs=86.3
Q ss_pred ccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCc
Q 004679 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (737)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 439 (737)
......+...++.....+. |-.|+..|..+|...+.+ .++||+|+.+++..+-. -.|+.||..++.+||.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~---~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEY---EDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcch---HHHHHHHHHHHhcChH
Confidence 3344566666666555555 778999999999988776 68999999999986643 3678999999999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchh
Q 004679 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (737)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (737)
..++.-.+..++..++++..+.......-.+.|....
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 9999888888999999999998887777778888663
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.75 E-value=24 Score=41.07 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=58.3
Q ss_pred eeeeecccCC-CCEEEEec----------CCCcEEEEEcCcccEEEEeecC--CCceEEEEecCCCCeEEEEecCCcEEE
Q 004679 629 IKQASFLGQR-GDYIASGS----------DDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKI 695 (737)
Q Consensus 629 i~~~~~~s~d-~~~l~sgs----------~D~~i~iWd~~t~~~~~~l~gH--~~~V~~v~~sp~~~~l~S~~~Dg~i~l 695 (737)
+.++. |..| +.|++.|. ..|.|.|+.+..+.-++....| ++.|.++.- -+|++|| |....|||
T Consensus 777 i~s~~-~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCK-FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeee-ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEE
Confidence 33444 4555 67777774 2588999998886666666665 444444332 2466775 56789999
Q ss_pred EcCCCCCCccccCCCCCCChh
Q 004679 696 WTPSASVPSIVSGGAAGPDTA 716 (737)
Q Consensus 696 W~~~~~~~~~~~~~~~~~~~~ 716 (737)
+++.+++.++....|..+..+
T Consensus 853 ye~t~~~eLr~e~~~~~~~~a 873 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIA 873 (1096)
T ss_pred EEccccceehhhhcccCCeEE
Confidence 999999999988888877653
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.62 E-value=0.2 Score=47.40 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=61.5
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCC-CceEEEEecCCCCeEEEE--ecCCcEEEEcCCCCCCcc
Q 004679 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPSI 705 (737)
Q Consensus 636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~-~~V~~v~~sp~~~~l~S~--~~Dg~i~lW~~~~~~~~~ 705 (737)
..++.+..+|..||.|+.|+++.++.+...-.|. ..+.....+..+..++++ |.|..++.|++..-....
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 4466799999999999999999999999999998 888888899889999999 999999999998755444
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.27 E-value=6.9 Score=38.59 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=44.6
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004679 57 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 57 ~~s~~g~~lasgs~-----dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
.|||||.+|...-. -|.|-|||...+ +.+..+ ..|.-....+.|.+| |..++.+ +|-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvva--nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVA--NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEe--CCceecc
Confidence 48999998876533 378999998754 355666 678888899999999 6777665 3445444
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.25 E-value=13 Score=38.28 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEeeCCCCCEEEEEEC---------CCcE
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAG---------DAEV 119 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I 119 (737)
+.++..-..+.+|+++.. -+.+++.+++..+..+.. + .....+.+...|+ |.+.++-.. ...-
T Consensus 68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcc
Confidence 344433334445555543 467777766655333211 1 1245567888888 566554333 0111
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+|.+... + .....+..+-..-+.|+|+|++..++++=+..+.|.-|++...... ........
T Consensus 144 ~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~- 206 (307)
T COG3386 144 SLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFV- 206 (307)
T ss_pred eEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEE-
Confidence 34444321 1 1123333334455789999966555555566688998888641100 00001111
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
......+..-.++...+ +.+.+++..+| .|.+|+.. ++++..+..+.
T Consensus 207 ----------~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-------------------- 254 (307)
T COG3386 207 ----------DFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-------------------- 254 (307)
T ss_pred ----------EccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECCC--------------------
Confidence 11112344556777776 45554444443 99999988 76665543221
Q ss_pred ccceeEEEEc-CCCCEEEEEeCC
Q 004679 279 SLHLTHVTFS-PNGEEVLLSYSG 300 (737)
Q Consensus 279 ~~~i~~v~~s-p~g~~l~~g~~d 300 (737)
..+++++|- |+.+.|++.+..
T Consensus 255 -~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 255 -KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred -CCCccceEeCCCcCEEEEEecC
Confidence 136777775 566666666553
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.16 E-value=16 Score=40.49 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCc-----cceE--EEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~-----~~V~--~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
+..++.++.++.|.-.|..+++.+..+..... ..+. .+.... +..++.++.++.|..+|.++++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~---~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD---PRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc---CCeEEEecCCCeEEEEECCCCC
Confidence 45677788889999999999998877632211 0010 111111 2578888889999999988654
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.08 E-value=12 Score=41.41 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=34.4
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEE--EEecCCCC-eEEEEe
Q 004679 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC--VQCHPFDC-VVATSG 688 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~--v~~sp~~~-~l~S~~ 688 (737)
.+++|+.|+.||.++.+|.+||+++-+++--. .+.+ +.|..+++ |+++.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~-~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPS-GIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCC-CceEcCEEEEeCCEEEEEEEe
Confidence 46788899999999999999999997776422 2222 22444665 555543
No 383
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.02 E-value=2.3 Score=46.06 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC-CCCCCCCCCc
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR-GLDDNAITPS 140 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~~ 140 (737)
|.+|+..+.+ .|.+||+.+++.+..+. -.+|..+.|+++ +++++-.+.+ .+.|++....... ..+.......
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~---v~~vk~V~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRID---VSAVKYVIWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEES---S-E-EEEEE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEe---cCCCcEEEEECC--CCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence 8888777665 89999999999999882 234899999999 7888888754 6778776531000 0000000023
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
..+......|.+..|.. + -+++|. .. +++. +..+.. ..+... ..++.-
T Consensus 190 ~~~~E~~~~IkSg~W~~-d-~fiYtT-~~-~lkY--l~~Ge~-----------------------~~i~~l---d~~~yl 237 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVE-D-CFIYTT-SN-HLKY--LVNGET-----------------------GIIAHL---DKPLYL 237 (443)
T ss_dssp EEEEEE-S--SEEEEET-T-EEEEE--TT-EEEE--EETTEE-----------------------EEEEE----SS--EE
T ss_pred EEEEEecceeEEEEEEc-C-EEEEEc-CC-eEEE--EEcCCc-----------------------ceEEEc---CCceEE
Confidence 33333367888999975 3 444443 33 6766 444431 111111 123444
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 221 CDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
+...|. .+.+.....|+.+..+.+.
T Consensus 238 lgy~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 238 LGYLPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence 555664 3577777777777777665
No 384
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.87 E-value=0.67 Score=45.03 Aligned_cols=69 Identities=16% Similarity=0.343 Sum_probs=54.1
Q ss_pred ecccCCCCEEEEecCCCcEEEEEcCcccEEEE-------ee-------cCCCceEEEEecCCCCeEEEEecCCcEEEEcC
Q 004679 633 SFLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-------LL-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698 (737)
Q Consensus 633 ~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~-------l~-------gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~ 698 (737)
+++..+++||+.-..+|.++|||+.+++++.. |. .....|..+..+.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 34778899999999999999999999875532 23 4677899999999998777766 467788776
Q ss_pred CCCC
Q 004679 699 SASV 702 (737)
Q Consensus 699 ~~~~ 702 (737)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 6553
No 385
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.81 E-value=0.77 Score=42.56 Aligned_cols=121 Identities=28% Similarity=0.277 Sum_probs=89.9
Q ss_pred chhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhc-ccccchhhhHHHHHHhhccCCcc
Q 004679 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-KWKNDAQMAIRDCYNARRIDSSS 440 (737)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~ 440 (737)
+...+..-++..+..|. |-.+...|..+|..++.... ..+.++|++|+.+++.. .|. +++.||..++.+.|..
T Consensus 94 kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCchh
Confidence 34445555666666666 55677888888988877544 77889999999999954 444 6789999999999999
Q ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004679 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (737)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
.++............++.+++.-........|+......+...+...+
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 988887788888888888888777777777777665555555544433
No 386
>PHA02713 hypothetical protein; Provisional
Probab=91.71 E-value=4.1 Score=45.96 Aligned_cols=22 Identities=0% Similarity=0.155 Sum_probs=16.5
Q ss_pred CcEEEEEeCCC--cEEEEECCCCC
Q 004679 228 PHLLLVGGSDA--FARLYDRRMLP 249 (737)
Q Consensus 228 ~~~l~t~s~Dg--~i~iwd~~~~~ 249 (737)
+.++++|+.|+ .+-.||..+.+
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CEEEEEeeecceeehhhcCccccc
Confidence 57999999888 66777776543
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=2.7 Score=48.98 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=94.0
Q ss_pred CccceEEEEEeeCCCCCEE--EEEECCCcEEEEecCCCCCCCCCCCC-CCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004679 92 HSANVFCTKFVPETSDELV--VSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 92 h~~~V~~v~~sp~~~~~~l--~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
...+|..+..+++ .... +..+.+-.|..||++........... +..............++.|.|.-....+.+..
T Consensus 99 k~~pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred ccccceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc
Confidence 3456667777777 3433 33344557899999864332110000 00011111223345688998866666778889
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
|+.|.+.-+...... +..+ ......++++|+|. +..+++|-..|++.-|-...
T Consensus 177 dlsl~V~~~~~~~~~------------------------v~s~-p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l- 229 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQN------------------------VTSF-PVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL- 229 (1405)
T ss_pred ccchhhhhhhhhhhh------------------------hccc-CcccceeeEEeccc-cceeeEecCCCeEEEeeccc-
Confidence 999999877655422 1111 12356799999996 68999999999998886542
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~ 298 (737)
+....+. +|+ . ...+.|.+|+|-....++++=+
T Consensus 230 eik~~ip---~Pp---------~-----~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 230 EIKSEIP---EPP---------V-----EENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ceeeccc---CCC---------c-----CCCcceeEEEEecceeEEEEec
Confidence 2111111 011 0 1133699999988777665543
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.43 E-value=4.3 Score=44.10 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC--CCEEEEEECCCcEEEEecC
Q 004679 51 GCVNAISWNSKGSLLI-SGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 51 ~~V~~l~~s~~g~~la-sgs--~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~~l~sgs~dg~I~iwd~~ 125 (737)
.+|..++|. ||+.++ |.- .+|.++.=| ...+..| .-|..+.|.|-.. ...|++......|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 488999997 565444 432 234444322 2345555 4488999999521 1245566677889999987
Q ss_pred CCCCCCCCCCCCCCceeec---cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004679 126 RFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
..... .+++-..++.. ...---..+.|+| ...+|+.-.....-.+++++.... .+..|+
T Consensus 91 ~s~~e---~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s------------rVkaDi-- 152 (671)
T PF15390_consen 91 PSTTE---RNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS------------RVKADI-- 152 (671)
T ss_pred cCccc---cccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc------------eEEEec--
Confidence 32111 11111111111 0011124578999 546666555544445566654431 122222
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
...+.|.|.+|.+++.+++++.+..=.-+|||-.
T Consensus 153 ----------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 ----------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ----------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 2346789999999865555555554566788764
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.31 E-value=14 Score=35.41 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=72.5
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEE--cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004679 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (737)
Q Consensus 148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 225 (737)
..-+.++|+.+...+.++-+.+-.|.-|| ..++.. .....+++++...... ......++...
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~e-------~~~PDGm~ID~ 221 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPFE-------SLEPDGMTIDT 221 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCcC-------CCCCCcceEcc
Confidence 33467899876666777778888898888 555542 2345566665432211 11223345555
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-CCCCEEEEEe
Q 004679 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSY 298 (737)
Q Consensus 226 ~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~l~~g~ 298 (737)
+ +++++++-..++|..+|..+++.+.++..+ ...|++++|- |+-..+++.+
T Consensus 222 e-G~L~Va~~ng~~V~~~dp~tGK~L~eiklP---------------------t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 222 E-GNLYVATFNGGTVQKVDPTTGKILLEIKLP---------------------TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred C-CcEEEEEecCcEEEEECCCCCcEEEEEEcC---------------------CCceEEEEecCCCccEEEEEe
Confidence 4 688888889999999999999987766432 1149999997 4444444443
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.10 E-value=13 Score=43.02 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=57.5
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC--
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-- 290 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-- 290 (737)
-...|..+.++|+ +.+++..+..|. .|..+.. ......+........|-.......+. ..+....|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~-g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPT-GSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCC-CCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCC
Confidence 3468899999997 578888877554 4444431 11111111111111111111111111 1233346999999996
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCCcc
Q 004679 291 -GEEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 291 -g~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
+.+|++-+.|+++++||+.....+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCC
Confidence 589999999999999999876543
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.06 E-value=0.63 Score=31.46 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred ceEEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004679 217 SLKSCDISSTRP--HLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 217 ~v~~i~~sp~~~--~~l~t~s~Dg~i~iwd~~~ 247 (737)
.+.+|.|+|..+ .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999998755 6899998899999999995
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.85 E-value=23 Score=40.11 Aligned_cols=104 Identities=9% Similarity=0.052 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------
Q 004679 51 GCVNAISWNSKGSLLISGS------DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------ 116 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs------~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------ 116 (737)
..+...+++|+|+.+|... .|+ .|.+++.. +.. ..+..+ ...+.-.|+|+ |..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspD--G~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLD--ADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCC--CCceEEEecCcceEEE
Confidence 4678899999999877554 243 45555542 222 333233 23778889999 5666655432
Q ss_pred ------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 117 ------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 117 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
+.+.+.++.... ... .....|..+.|+|++..+.+.. ++.|.+-
T Consensus 424 ~~~~~~gql~~~~vd~ge-----------~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va 473 (591)
T PRK13616 424 IRDPATGQLARTPVDASA-----------VAS--RVPGPISELQLSRDGVRAAMII--GGKVYLA 473 (591)
T ss_pred eccCCCceEEEEeccCch-----------hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEE
Confidence 122222222110 111 2355799999999654444433 4666663
No 393
>PHA03098 kelch-like protein; Provisional
Probab=90.52 E-value=17 Score=41.02 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=33.1
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecCC
Q 004679 60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR 126 (737)
Q Consensus 60 ~~g~~lasgs~dg------~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~ 126 (737)
.++.+++.|+.++ .+..||..+.+... +....... -.+++ .-+ +.+++.|+.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~-~~~--~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT-VFN--NRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE-EEC--CEEEEEeCCCCCEecceEEEEcCCC
Confidence 3556677776542 56788887765432 21111111 11222 223 5677888765 3466777664
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=3.3 Score=44.21 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=91.7
Q ss_pred cCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCeE-EEEEccc
Q 004679 20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-------LLISGSDDTHINVWSYSSRKL-LHSIETG 91 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-------~lasgs~dg~V~vwd~~~~~~-~~~~~~~ 91 (737)
+..++..+ -++|..-+.+++.+.++.-|.. |+-+.+.|+.+ .-+.|-.|+.|.-||.+-... .....++
T Consensus 348 il~~~~~~--~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQ--DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCc--CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34444444 4556677999999999998877 88888988754 223466788999999863221 1111123
Q ss_pred Cc----cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004679 92 HS----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 92 h~----~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
|. ....|.+-..+ .+++.|+.+|.|++||---.. .-..+.+...+|..|..+.++ ..++ |.
T Consensus 425 kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdri~~~----------AKTAlPgLG~~I~hVdvtadG-Kwil-~T 489 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDRIGRR----------AKTALPGLGDAIKHVDVTADG-KWIL-AT 489 (644)
T ss_pred cccccccccceeeecCC---ceEEEeecCCcEEeehhhhhh----------hhhcccccCCceeeEEeeccC-cEEE-Ee
Confidence 32 23444443333 589999999999999963211 123466778899999999854 5443 33
Q ss_pred CCCcEEEEEcCC
Q 004679 168 EDGTLRQHDFRQ 179 (737)
Q Consensus 168 ~Dg~I~vwdl~~ 179 (737)
.+..+.+-++.-
T Consensus 490 c~tyLlLi~t~~ 501 (644)
T KOG2395|consen 490 CKTYLLLIDTLI 501 (644)
T ss_pred cccEEEEEEEec
Confidence 356777777653
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.35 E-value=4.9 Score=38.38 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004679 51 GCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~---------dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i 121 (737)
.+.+.-..+|+|++.+---. .|.++.|-... .+..+ ...-.--+.++|..+. ..+.+.-+.+-+|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceee-ehhccCCccccccccC-cEEEEEccCceEEee
Confidence 44556667889988442211 13334443221 11111 1112233578898775 556677788899999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
||.....+.......+-.+...+.. ....-.+++.. .+++.+++-..++|...|..+++.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence 9976555544322221111111111 11123345555 567888888889999999999873
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.12 E-value=42 Score=38.90 Aligned_cols=89 Identities=17% Similarity=0.080 Sum_probs=54.9
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC--CCCCCCC-CCCCCc-------eeeccCCCceeEEEEecCC--C
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF--SGRGLDD-NAITPS-------ALYQCHTRRVKKLAVEVGN--P 160 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~-~~~~~~-------~~~~~h~~~v~~l~~~p~~--~ 160 (737)
.-.|..|.++|+ |.+|+..|..|.+.+.=.+.. .+...+. ....+. .........|..+.|+|.+ +
T Consensus 84 ~f~v~~i~~n~~--g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPT--GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCC--CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 356888999999 798888887665555433321 1100000 000100 0012345688999999953 4
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCC
Q 004679 161 HVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 161 ~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
..|+.-..|+++++||+.....+
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCC
Confidence 67778889999999999865544
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.50 E-value=4.5 Score=43.98 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=73.7
Q ss_pred cCCceEEEEEcCCC----CEEEEEeCCCcEEEEECC-----CCeEEEEE--cccCccc--eEEEEEeeCCCCCEEEEEEC
Q 004679 49 HQGCVNAISWNSKG----SLLISGSDDTHINVWSYS-----SRKLLHSI--ETGHSAN--VFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 49 H~~~V~~l~~s~~g----~~lasgs~dg~V~vwd~~-----~~~~~~~~--~~~h~~~--V~~v~~sp~~~~~~l~sgs~ 115 (737)
.=+.|.+++|.|-+ ..|....-.+.|.||.+. +.+.+..- .....-+ -..+.|+|. ...|+.-..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk--~~iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK--KAILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC--CceEEEEec
Confidence 33579999999942 234444455799999885 22222111 0011112 246789999 577776666
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
...-.+++++....+ +..--...+.|.|.+|.+++.+++++.+..=.-++||-...
T Consensus 133 ~dvSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CceeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 555566676643322 22222457789999999977666666666666778885543
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.44 E-value=33 Score=36.72 Aligned_cols=43 Identities=19% Similarity=0.002 Sum_probs=33.1
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004679 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
......+.+++.+|. +++.|+...=|+|.++|+..+..++.+.
T Consensus 304 ~D~~R~~~~i~~sP~-~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 304 PDSKREGESICLSPS-GRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred ccCCceEEEEEECCC-CCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 334456788999997 5788887777999999999887665553
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.34 E-value=28 Score=39.74 Aligned_cols=160 Identities=10% Similarity=0.084 Sum_probs=96.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEE------EEc---------------ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~------~~~---------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.++|++|. .+.|.||+.+...... .+. ......|+.|....-++...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67787776 5699999986432211 110 0022346666655544457899999999999
Q ss_pred EEecCCCC-----C-----CCCCCCCCCCceeeccCCCceeEEEEe--cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004679 121 LFNLSRFS-----G-----RGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (737)
Q Consensus 121 iwd~~~~~-----~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~ 188 (737)
+|.+..-- . ........+|...+. ....+++++++ . ..++||+++....|.+|-+........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~--- 202 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY--- 202 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence 99764200 0 000011223443333 44578999998 5 557888888888888887655321100
Q ss_pred CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--Cc---EEEEEeCCCcEEEEECC
Q 004679 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR 246 (737)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~---~l~t~s~Dg~i~iwd~~ 246 (737)
......+..-|-+++|-++. +. .+++++-.|.+.+|++.
T Consensus 203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 00011134457788887654 22 78888999999999884
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.23 E-value=1.6 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.4
Q ss_pred CceEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004679 51 GCVNAISWNSK-G--SLLISGSDDTHINVWSYSS 81 (737)
Q Consensus 51 ~~V~~l~~s~~-g--~~lasgs~dg~V~vwd~~~ 81 (737)
++|.+++|||+ + .+|+.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999984 4 5888888889999999985
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.13 E-value=29 Score=35.63 Aligned_cols=225 Identities=12% Similarity=0.004 Sum_probs=108.2
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004679 57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 57 ~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 135 (737)
.|.++.. ++.+--..+.|.-|+..+++.. .+ .+...+.++..-.. +..|+++. .-+.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~--~~p~~~~~~~~~d~--~g~Lv~~~--~g~~~~~~~~~~~~t---- 99 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF--PSPGGFSSGALIDA--GGRLIACE--HGVRLLDPDTGGKIT---- 99 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE--ECCCCcccceeecC--CCeEEEEc--cccEEEeccCCceeE----
Confidence 3667665 5556667788999998866432 23 13344455554444 35566553 335666664322100
Q ss_pred CCCCcee-ecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc-CCceeeccCCC
Q 004679 136 AITPSAL-YQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR-CGAKRSLADPP 212 (737)
Q Consensus 136 ~~~~~~~-~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 212 (737)
.+.. ..+ -....+.+...|++ .+. .+.... ++ .+... ..... .++-+. .+....+. .
T Consensus 100 ---~~~~~~~~~~~~r~ND~~v~pdG-~~w-fgt~~~----~~--~~~~~-----~~~~G--~lyr~~p~g~~~~l~--~ 159 (307)
T COG3386 100 ---LLAEPEDGLPLNRPNDGVVDPDG-RIW-FGDMGY----FD--LGKSE-----ERPTG--SLYRVDPDGGVVRLL--D 159 (307)
T ss_pred ---EeccccCCCCcCCCCceeEcCCC-CEE-EeCCCc----cc--cCccc-----cCCcc--eEEEEcCCCCEEEee--c
Confidence 0110 111 11344567777743 433 233322 22 11100 00011 122211 12222111 1
Q ss_pred CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004679 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
.+...-+.++|||++..++++=+..+.|.-|++.. +..... ..+ ... . ...+..-.++...+
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-----------~~~---~~~-~-~~~G~PDG~~vDad 223 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-----------RGF---VDF-D-EEPGLPDGMAVDAD 223 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-----------ceE---EEc-c-CCCCCCCceEEeCC
Confidence 22345588999998544444445568888888763 111000 000 000 0 01112445788889
Q ss_pred CCEEEEEeCCC-eEEEEEcCCCCcceeeeecCCCCeeeee
Q 004679 291 GEEVLLSYSGE-HVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (737)
Q Consensus 291 g~~l~~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 329 (737)
|.+.+++..+| .|.+|+.. ++...........+..++|
T Consensus 224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 98776555554 99999988 5655444444355555555
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.11 E-value=7.2 Score=41.27 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=69.4
Q ss_pred ccccceeecccC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEEcccCcc-
Q 004679 39 RLSQERELEGHQ---GCVNAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA- 94 (737)
Q Consensus 39 ~~~~~~~l~~H~---~~V~~l~~s~~g~~lasgs~--------------------dg~V~vwd~~~~~~~~~~~~~h~~- 94 (737)
+++....+.... .--..+-|.|.-+.++|... -.++.+||+.+.+.++++.-+.++
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 345555554322 22345667777777777642 357999999999999998544433
Q ss_pred ceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCC-CCC---C-------CCCC-CCceeeccCCCceeEEEEecCCCc
Q 004679 95 NVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSG-RGL---D-------DNAI-TPSALYQCHTRRVKKLAVEVGNPH 161 (737)
Q Consensus 95 ~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~-~~~---~-------~~~~-~~~~~~~~h~~~v~~l~~~p~~~~ 161 (737)
....|.|..+.... -|+.+.....|..|--..... ... . .... ..+..+..-..-|+.|.+|.++..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 46788888763222 355555555665554321100 000 0 0000 001122222456899999997766
Q ss_pred EEEEEeCCCcEEEEEcCCCCCC
Q 004679 162 VVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 162 ~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+.+++-.+|.|+.||+.....+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 6677778999999999987654
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=2.5 Score=49.20 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEE--------EE--EcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 52 CVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLL--------HS--IETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~--------~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
+|..+...+|+...++-. .+-.|..||+++-..- +. ..........++.|+|.- ....+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccch
Confidence 566667777877655443 3347888998753211 11 001223456789999985 5667888889999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
++..+...... +.. .......++++|+| .+..++.|-..|++.-|...
T Consensus 181 ~V~~~~~~~~~---------v~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---------VTS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhh---------hcc-cCcccceeeEEecc-ccceeeEecCCCeEEEeecc
Confidence 99888753221 122 23566789999999 66888899999999988654
No 404
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.82 E-value=56 Score=38.46 Aligned_cols=236 Identities=11% Similarity=0.095 Sum_probs=114.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEc-------ccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCC--CC
Q 004679 64 LLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RG 131 (737)
Q Consensus 64 ~lasgs~dg~V~vwd~~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~--~~ 131 (737)
-++.-...|.|++|=.+......... ......|+..++.+..+|..++.++.+ +.|++|.+.-.=+ .+
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 45556677899998763221111110 124566777777743336666555555 7888876542111 11
Q ss_pred -CCCCCCCCceeec---------------------cCCCceeEEEEec------CCCcEEEEEeC----CCcEEEEEcCC
Q 004679 132 -LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQ 179 (737)
Q Consensus 132 -~~~~~~~~~~~~~---------------------~h~~~v~~l~~~p------~~~~~l~s~s~----Dg~I~vwdl~~ 179 (737)
.+. ...|...+. ..-..++.+.|-+ ..+.++++.+. ...|.-|.++.
T Consensus 144 ~~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 144 QIDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred cCCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 111 000110000 0113566777765 12345544432 23688999987
Q ss_pred CCCCCCCCCCCCc-cceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc-cCC
Q 004679 180 GSSCPPAGSSHQE-CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC-QKR 257 (737)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~-~~~ 257 (737)
............. .........................|.+++.... +..++....||.|.++|..+.+.+... ..+
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence 6532100000000 0000000000000000111112345667766665 468999999999999999998876655 111
Q ss_pred CCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEE
Q 004679 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (737)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~ 304 (737)
..+......+...... .....+..++|||++.-++.-..+|.+.
T Consensus 302 ~~~~~v~s~~~~Gf~f---p~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHF---PCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CCcccccccccccccc---ccCCCCceEEECcccceEEEEecCCCce
Confidence 1111111111111000 0011355689999999999999988855
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.31 E-value=5.7 Score=42.40 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=58.8
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE-EEEeeCCC-----------
Q 004679 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-TKFVPETS----------- 106 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~-v~~sp~~~----------- 106 (737)
.......|......+.+|+.+|++.+.|+...=|.|.++|+.++..++-+ ++..+.=.. +.......
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCC
Confidence 44555667777788999999999999999888899999999998877666 444332111 11111100
Q ss_pred -----CCEEEEEECCCcEEEEecCC
Q 004679 107 -----DELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 107 -----~~~l~sgs~dg~I~iwd~~~ 126 (737)
--+++-+..-|.|.||.++.
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCC
Confidence 01345566778888998875
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.78 E-value=0.61 Score=52.54 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=70.1
Q ss_pred ecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEEEE----cccCccceEEEEEeeCCC-CCEEEEEECCC
Q 004679 46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLLHSI----ETGHSANVFCTKFVPETS-DELVVSGAGDA 117 (737)
Q Consensus 46 l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~--~~~~~~~~----~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg 117 (737)
++|..+.|-.|.|.. +...++ ..=|.+.|||++ .|+....+ .......+.-|.|.|--- ..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456677888888864 323333 333678999886 34332222 123344445555665320 35666777789
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE-----------ecCCCcEEEEEeCCCcEEEEEcC
Q 004679 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
.|++..+.... ...+.+|...++.++| +| ++..++.++.||.+++|.+.
T Consensus 206 ~i~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeee
Confidence 99988776422 2344557766666554 56 55677777777777777653
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=87.73 E-value=26 Score=38.78 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=50.5
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccce-EEEEEeeCCCCCEEEEEECC--CcEEEEecCCCCCCCC
Q 004679 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGL 132 (737)
Q Consensus 61 ~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~ 132 (737)
++.++++|+.++ .+..||..+.+....- .-..... .+++ .-+ +.+.+.|+.+ ..+..||.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~--~~iYviGG~~~~~sve~ydp~~n~---- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PAN--NKLYVVGGLPNPTSVERWFHGDAA---- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EEC--CEEEEECCcCCCCceEEEECCCCe----
Confidence 456677787543 4667887776533211 1111111 1222 233 5677777754 357777765321
Q ss_pred CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEEEcCCC
Q 004679 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 180 (737)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~ 180 (737)
+..+..+.........+.+ ++.+.+.|+.++ .+..||.++.
T Consensus 343 ----W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 343 ----WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ----EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence 1112222211111122222 557777777653 3556666554
No 408
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.94 E-value=1.6 Score=49.44 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=46.1
Q ss_pred CCCCEEEEecCCCcEEEEEcCc----cc-EEEEeecC---------------------CCceEEEEecC----CCCeEEE
Q 004679 637 QRGDYIASGSDDGRWFIWEKQT----GR-LIKMLLGD---------------------EAVVNCVQCHP----FDCVVAT 686 (737)
Q Consensus 637 ~d~~~l~sgs~D~~i~iWd~~t----~~-~~~~l~gH---------------------~~~V~~v~~sp----~~~~l~S 686 (737)
.+...++.+..||.+...+... +. ....+... ...+.++++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667777888888888887774 22 11111111 24677788887 6779999
Q ss_pred EecCCcEEEEcCCCCCCcccc
Q 004679 687 SGIDNTIKIWTPSASVPSIVS 707 (737)
Q Consensus 687 ~~~Dg~i~lW~~~~~~~~~~~ 707 (737)
.+.|+++|+||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.82 E-value=35 Score=33.88 Aligned_cols=213 Identities=8% Similarity=0.003 Sum_probs=107.7
Q ss_pred cccceeecc-cCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 40 LSQERELEG-HQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 40 ~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
.+.+.++.- ...-..++.|..+|.++-+.+.-| .|+.+|+.+++......-....--..++...+ .++.--=.+
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~ 109 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKE 109 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecC
Confidence 455555542 223456788877888888887766 68999999998776553223333344555543 333333457
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
+...+||..+.. .+..+. ....=..++. ++..++ ...-...+.++|..+.+.. ..
T Consensus 110 ~~~f~yd~~tl~----------~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~-----------~~ 164 (264)
T PF05096_consen 110 GTGFVYDPNTLK----------KIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEV-----------RT 164 (264)
T ss_dssp SEEEEEETTTTE----------EEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEE-----------EE
T ss_pred CeEEEEccccce----------EEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceE-----------EE
Confidence 889999998632 233332 3344566663 244455 4444567889987765532 11
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc-cc-C
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH-LS-E 274 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 274 (737)
+. +.........++-+.+-. +...|=.-....|...|..++.....+... ...+.. .. .
T Consensus 165 i~---------V~~~g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls--------~L~~~~~~~~~ 225 (264)
T PF05096_consen 165 IQ---------VTDNGRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLS--------GLRPEVGRDKS 225 (264)
T ss_dssp EE----------EETTEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-H--------HHHHHHTSTTS
T ss_pred EE---------EEECCEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhh--------Hhhhccccccc
Confidence 10 100001123455566652 455555556666777777776644332100 000000 00 0
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeC
Q 004679 275 HGRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
......-.+.+|++|....|++.+.
T Consensus 226 ~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 226 RQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T--TTS-EEEEEEETTTTEEEEEET
T ss_pred ccccCCeeEeEeEeCCCCEEEEEeC
Confidence 0001223788999998776666654
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.59 E-value=38 Score=34.08 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=82.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004679 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
++.|+.|..+| |.+++...... +.... +...|..+...|.- +.|++-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~---------~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSK---------PTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCcc---------ceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 68899999999 89999832111 11222 23349999998844 4554443 599999999876643211
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEE-EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004679 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (737)
........ ............+...+ -....+...++......|.+|.......... ...+
T Consensus 73 ~~~~~~~~-----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~k 133 (275)
T PF00780_consen 73 APLAFPKS-----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLLK 133 (275)
T ss_pred cccccccc-----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------ceeE
Confidence 00000000 00000001111222222 1111233444444456898888765311000 0001
Q ss_pred ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+ .+ ...+..++|. +..|+.|..+ ...+.|+.++.
T Consensus 134 e~---~l------p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 134 EI---SL------PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EE---Ec------CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence 11 11 1148889998 5567777755 58888988754
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.45 E-value=0.31 Score=54.75 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=52.3
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEE-----------ecCCCCeEEEEecCCcEEEEcCC
Q 004679 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ-----------CHPFDCVVATSGIDNTIKIWTPS 699 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~-----------~sp~~~~l~S~~~Dg~i~lW~~~ 699 (737)
|-+..-|+..|-.++.|++.+..+... ..+++|...++.++ .||||+.||.+..||.++.|.+-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 466778999999999999988877655 66778988777665 58999999999999998888753
No 412
>PHA03098 kelch-like protein; Provisional
Probab=86.32 E-value=27 Score=39.25 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------CcEEEEecCC
Q 004679 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSR 126 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~ 126 (737)
++.+++.|+.+ ..+..||..+.+-...-...+...-.+++. -+ +.+++.|+.+ ..+..||+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCC
Confidence 56777778765 346778877654322110001111112222 23 4677777732 3577888765
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.64 E-value=6.2 Score=42.19 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=58.4
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-- 291 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-- 291 (737)
....|..+..++. |..++..+.+|.+.++=.+...+-..+....+... .+++......-.......+..++|+|+.
T Consensus 102 V~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~-CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 102 VLFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVN-CRTTPVAERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred ceEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEE-EEeecccceeeccCCceeeeeccccCCccC
Confidence 3467788888997 57888888899776654332222222211111111 1111111110011122257889999975
Q ss_pred -CEEEEEeCCCeEEEEEcCCCCcc
Q 004679 292 -EEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 292 -~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
..|+.-+.|+.+++||+......
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchh
Confidence 77899999999999999986654
No 414
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.15 E-value=60 Score=34.21 Aligned_cols=114 Identities=8% Similarity=-0.047 Sum_probs=60.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC-----------------
Q 004679 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA----------------- 117 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg----------------- 117 (737)
...++|+.+.|+-......|+--|+.+++....+ ......+-...|..+.++.+++..-...
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4667788887766655678888999998765544 4566666667787655455554432111
Q ss_pred -----cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC---CC-cEEEEEcCCC
Q 004679 118 -----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DG-TLRQHDFRQG 180 (737)
Q Consensus 118 -----~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---Dg-~I~vwdl~~~ 180 (737)
.|.--|+.+++ ...+..-...+..+.|+|.++.+|+-|-. +. .-++|-+++.
T Consensus 164 a~p~~~i~~idl~tG~-----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGE-----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp C---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred hCCCceEEEEECCCCc-----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 11222222211 23333345677889999988888876643 22 1355665543
No 415
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.00 E-value=78 Score=35.46 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEeecC
Q 004679 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 668 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH 668 (737)
.+.+++.|+.||.++.+|.+||+++-.++-.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 5667888999999999999999999877654
No 416
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.07 E-value=40 Score=38.24 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 52 CVNAISWNSKGSLLISGSDD------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~d------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
..+.-.|+|+|..|++.... +.+.+.+++.+.... .....|..++|+|+ |..++... ++.|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpD--G~RiA~i~-~g~v 470 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRD--GVRAAMII-GGKV 470 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCC--CCEEEEEE-CCEE
Confidence 36778899999887776532 223333333332211 22457999999999 67776655 4777
Q ss_pred EEEecCCC-CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004679 120 RLFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 120 ~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~ 178 (737)
.+=-+... .+... . ..+..........+.++.|.. ++.++ .+..++...+|.+.
T Consensus 471 ~Va~Vvr~~~G~~~-l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQYA-L--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCcee-e--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEEe
Confidence 77433321 11100 0 011111222334468899998 44544 55555544555544
No 417
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.77 E-value=5 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=22.9
Q ss_pred EEeecCCCceEEEEecCCCC-eEEEEecC--CcEEEE
Q 004679 663 KMLLGDEAVVNCVQCHPFDC-VVATSGID--NTIKIW 696 (737)
Q Consensus 663 ~~l~gH~~~V~~v~~sp~~~-~l~S~~~D--g~i~lW 696 (737)
..+.-..+.-...+|||||+ ++.++..+ |.-.||
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34555566788899999998 55555566 777776
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.75 E-value=4.5 Score=43.86 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=46.0
Q ss_pred ccCCCCEEEEe-----cCCCcEEEEEcCcccEEEEe-ecCCCceEEEEecCCCCeEEEEecCC-----------cEEEEc
Q 004679 635 LGQRGDYIASG-----SDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT 697 (737)
Q Consensus 635 ~s~d~~~l~sg-----s~D~~i~iWd~~t~~~~~~l-~gH~~~V~~v~~sp~~~~l~S~~~Dg-----------~i~lW~ 697 (737)
+||||++||-+ ++...++|.|+.+|+.+..- .+ .. -..+.|.+|++.|+-...|. .|+.|.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 79999998753 44467999999999877532 32 11 22399999988554444332 378888
Q ss_pred CCCCCCc
Q 004679 698 PSASVPS 704 (737)
Q Consensus 698 ~~~~~~~ 704 (737)
+.+...-
T Consensus 209 ~gt~~~~ 215 (414)
T PF02897_consen 209 LGTPQSE 215 (414)
T ss_dssp TTS-GGG
T ss_pred CCCChHh
Confidence 8776543
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.23 E-value=8.5 Score=37.39 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=43.8
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEE------cc-------cCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 58 ~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~------~~-------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
+..++.+|++-..+|.+++||+.+++.+..- .. .....|..+.++.+ |.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence 4467889999999999999999998765332 11 23455666667655 55555543 466677766
Q ss_pred C
Q 004679 125 S 125 (737)
Q Consensus 125 ~ 125 (737)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 5
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.73 E-value=66 Score=32.94 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=73.2
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
-.+.+..+..+++|.+++++..-.-+.-||--...-. .+...-...|..+.|.|+ +.+.+. ...|.|+.=+.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~--~~lw~~-~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPD--GNLWML-ARGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TT--S-EEEE-ETTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCC--CCEEEE-eCCcEEEEccCCCCc
Confidence 3467888888999998888866555567775432222 221345688999999999 555554 488888887622100
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004679 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
..- .++........-.+..++|.+ ...+.++|+ .|++. .....++.= ...
T Consensus 219 ~~w-----~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~-~S~DgGktW----------------------~~~ 268 (302)
T PF14870_consen 219 ETW-----SEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL-VSTDGGKTW----------------------QKD 268 (302)
T ss_dssp EEE--------B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE-EESSTTSS-----------------------EE-
T ss_pred ccc-----ccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE-EeCCCCccc----------------------eEC
Confidence 000 000111112233478899987 445665554 45443 333333310 001
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004679 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
........-++.+.|.+. .+-++. +.+|.|.-|
T Consensus 269 ~~~~~~~~n~~~i~f~~~-~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 269 RVGENVPSNLYRIVFVNP-DKGFVL-GQDGVLLRY 301 (302)
T ss_dssp GGGTTSSS---EEEEEET-TEEEEE--STTEEEEE
T ss_pred ccccCCCCceEEEEEcCC-CceEEE-CCCcEEEEe
Confidence 111112345678888764 244444 467776544
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=81.39 E-value=58 Score=36.02 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=33.2
Q ss_pred CCCCEEEEEeCC--CcEEEEECCCCeEEEEEcccCccceEE-EEEeeCCCCCEEEEEECCC---cEEEEecCC
Q 004679 60 SKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFC-TKFVPETSDELVVSGAGDA---EVRLFNLSR 126 (737)
Q Consensus 60 ~~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~~l~sgs~dg---~I~iwd~~~ 126 (737)
-++.+.+.|+.+ ..+..||..+.+... + ..-..+... ....-+ +.+.+.|+.++ .+..||...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~-~~l~~~r~~~~~~~~~--g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-M-PSLLKPRCNPAVASIN--NVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEE-C-CCCCCCCcccEEEEEC--CEEEEecCcCCCCccEEEEeCCC
Confidence 356777777754 357778876654322 1 111111111 112223 57778877653 466777764
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.85 E-value=0.32 Score=51.02 Aligned_cols=149 Identities=9% Similarity=0.085 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
......|-|.+.-++.++.+..|..||-. ++..... ..+.....++|.-+. +..++.+-..+.+.+||+.....+.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhHHH
Confidence 33456788877768888888899999954 4444333 245667788888863 3345666678999999998633221
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004679 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
+..--.|+... +.|++ +...++.+...|.+.+++....+.+. ..
T Consensus 112 --------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii-------------------------v~ 155 (615)
T KOG2247|consen 112 --------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII-------------------------VM 155 (615)
T ss_pred --------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh-------------------------hh
Confidence 11111122222 78888 55677788888999999988765331 11
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004679 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
..|...++++++.+. ++.+.++.|..+.+
T Consensus 156 Gkh~RRgtq~av~lE--d~vil~dcd~~L~v 184 (615)
T KOG2247|consen 156 GKHQRRGTQIAVTLE--DYVILCDCDNTLSV 184 (615)
T ss_pred cccccceeEEEeccc--ceeeecCcHHHHHH
Confidence 125567788888885 36666666655433
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.40 E-value=11 Score=39.76 Aligned_cols=118 Identities=11% Similarity=0.196 Sum_probs=76.5
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004679 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
..++|.+|.||+|.+.||.--.|++|.+++....+.. .+. +..+..|....|+.. .-++.....| +-+|..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSS---TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecC---eeEEEEecCC-eEEEEE
Confidence 4579999999999999999999999999998443322 222 334556889999886 3344444333 666665
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCC
Q 004679 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQG 180 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~ 180 (737)
.... ..++..+.|...|.-..|.++..-.|.+.+ ..+++.-+-++++
T Consensus 140 ~pek---------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEK---------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhh---------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 5321 125566778888888888885433343433 4445555555544
No 424
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.47 E-value=31 Score=41.68 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
.....++|+|...++|.|...|.|.++-...-+........-.-.+.-+.+-.. .........+..+.+|...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~--~s~~~~l~~~~~~~~~~~~ 108 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVG--ISRNLVLSDDDSLHLWSIK 108 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeec--ccccceeecccceeeeccc
Confidence 355678999999999999999999999866444332221001112222222222 2334444556667777665
No 425
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.91 E-value=8.8 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=24.4
Q ss_pred CCCCEEEE-ecCCCcEEEEEcCcccEEEEeec
Q 004679 637 QRGDYIAS-GSDDGRWFIWEKQTGRLIKMLLG 667 (737)
Q Consensus 637 ~d~~~l~s-gs~D~~i~iWd~~t~~~~~~l~g 667 (737)
||+++|.. .-.+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56775555 45689999999999999888775
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.41 E-value=9.3 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004679 289 PNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (737)
Q Consensus 289 p~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 329 (737)
|++++|+++.. ++.|.++|..++..... ...+..+..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~-i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT-IPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE-EECCCCCceEEe
Confidence 67888887765 78999999988654333 333444444444
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.89 E-value=1.1e+02 Score=32.86 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE---EEEcccCccceEEEEEe---eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004679 62 GSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~---~~~~~~h~~~V~~v~~s---p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 135 (737)
...|+.|+.+|.++||+....... .-+...-..+|..++.- +.. ....++.-.-..+.+|.+....+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~-~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGS-EDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCC-CcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998654311 11112345788887754 332 33344445678899999865443321111
Q ss_pred CCCCceeeccCCC--ceeEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004679 136 AITPSALYQCHTR--RVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 136 ~~~~~~~~~~h~~--~v~~l~~~p~----~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
.+. +..+..|.- ....+.+-|- +..++..-+.||.+.+|+-+..... .
T Consensus 116 ~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~-------------------------~ 169 (418)
T PF14727_consen 116 QYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS-------------------------R 169 (418)
T ss_pred EEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE-------------------------E
Confidence 111 222233322 2233333332 2467888899999999985543200 0
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
..+. ..-...+++.+. -+.|++++.+..+..|....
T Consensus 170 ~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHH
Confidence 0000 112234677775 47899999999999997643
No 428
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.63 E-value=43 Score=40.42 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=88.6
Q ss_pred eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCC------CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 69 SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD------ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 69 s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
+.|+.+.+|+++++.....+ .+-...|..|..-.-.+| ++++..+.--.|.|+-+...+.... ...+.-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~-~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE-LSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc-cccccccee
Confidence 34678999999997777777 566777777764321112 3344444455677766543222110 000000112
Q ss_pred eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc--CCceeeccCCC-CCccceE
Q 004679 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPP-KQTLSLK 219 (737)
Q Consensus 143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~v~ 219 (737)
+......|+|+... ++|+++++ |.|| .+|.+.-...-. . -...|.++..... ..-.+.+...+ .+..+|.
T Consensus 174 i~~dg~~V~~I~~t-~nGRIF~~-G~dg--~lyEl~Yq~~~g--W-f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYT-ENGRIFFA-GRDG--NLYELVYQAEDG--W-FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred eecCCceEEEEEec-cCCcEEEe-ecCC--CEEEEEEeccCc--h-hhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 22234567888844 47677754 5566 555543211000 0 0000111110000 00011122223 4567899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 220 SCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.+..... .+.+.+-+..+.|.+||+..
T Consensus 247 qi~ID~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEeccc-cceeeeeccCceEEEEEccC
Confidence 9999886 47899999999999999976
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.45 E-value=36 Score=32.52 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---C---cEEE---EecCCCCCCC
Q 004679 63 SLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---A---EVRL---FNLSRFSGRG 131 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g---~I~i---wd~~~~~~~~ 131 (737)
+.|+.+...+.|.+|++. ..+....| . --+.|..+.++.. |++|++--.+ . .+++ |+........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~-Tv~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-S-TVGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-c-chhheeEEEeccc--cceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 444444555789999988 34556666 2 3488999999998 7999987543 2 4566 3333111111
Q ss_pred C-----C----CCC---CC-Cceee-ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 132 L-----D----DNA---IT-PSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 132 ~-----~----~~~---~~-~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
. . ... .. .+... -.-+.++.+++..|..|++++. + ++++.+|.+....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEE
Confidence 0 0 000 00 01111 1235577889999988887743 3 4689999887653
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.78 E-value=1.8e+02 Score=34.51 Aligned_cols=92 Identities=8% Similarity=0.085 Sum_probs=57.6
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE
Q 004679 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l 294 (737)
......++|+|.....||+....|...|||+........-.... ..... ..+............+.|.++-..|
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~-----~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~l 218 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL-----SRNIS-GSIIFDPEELSNWKRILWVSDSNRL 218 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceee-----ccCCC-ccccCCCcccCcceeeEecCCCCEE
Confidence 44667899999888899999999999999993222111100000 00000 0110000111247789999998888
Q ss_pred EEEeCCCeEEEEEcCCCCc
Q 004679 295 LLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 295 ~~g~~dg~v~iwd~~~~~~ 313 (737)
++++.. .+.++|+.+...
T Consensus 219 Lv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 219 LVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred EEEcCC-ceEEEECCCCCc
Confidence 888776 788999988654
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.30 E-value=77 Score=33.61 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=38.4
Q ss_pred cceEEEEEeeCCCCCEEEEEE-----------CCC-cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004679 94 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (737)
Q Consensus 94 ~~V~~v~~sp~~~~~~l~sgs-----------~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 161 (737)
.....|+|.++ |.++++-. ..+ .|.+++-...++.. .....+.......+.+++.+ ++
T Consensus 14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~-~G- 83 (367)
T TIGR02604 14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAV-GG- 83 (367)
T ss_pred CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEec-CC-
Confidence 44567888888 67776653 223 67777655444432 11233333334568899987 54
Q ss_pred EEEEEeCCCcEEEE
Q 004679 162 VVWSASEDGTLRQH 175 (737)
Q Consensus 162 ~l~s~s~Dg~I~vw 175 (737)
+++ +... .|..+
T Consensus 84 lyV-~~~~-~i~~~ 95 (367)
T TIGR02604 84 VYV-ATPP-DILFL 95 (367)
T ss_pred EEE-eCCC-eEEEE
Confidence 554 4444 34434
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.22 E-value=99 Score=31.36 Aligned_cols=228 Identities=11% Similarity=0.068 Sum_probs=116.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEEcc----cCccceEEEEEeeCC----------CCCEE
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYS-------SRKLLHSIET----GHSANVFCTKFVPET----------SDELV 110 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~-------~~~~~~~~~~----~h~~~V~~v~~sp~~----------~~~~l 110 (737)
.-+.|+|+|.+.+-++...-+...+||.. ....+.++.. ......+.+.|+... ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999988888888899999986 1223333311 123467888888542 01247
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCce-eEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004679 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRV-KKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v-~~l~~~p~--~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
+.+++||+|.-|.......... .....+.. -...| ..+++... +..+.++--..++|.+||-.-.+....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~- 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP- 177 (336)
T ss_pred EEEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence 8889999999998653221000 00111211 11223 34555432 223444555678999998543321100
Q ss_pred CCCCCccceEEEeccCCceeeccCC----CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004679 187 GSSHQECRNILLDLRCGAKRSLADP----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
. .+.|..-. .....+ ......|+-..-.+.. ..=+.|..-|.|-+||+. ++.++.+....
T Consensus 178 --g------~F~DP~iP--agyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~-G~l~~r~as~g---- 241 (336)
T TIGR03118 178 --G------SFIDPALP--AGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLN-GQLLRRVASSG---- 241 (336)
T ss_pred --C------CccCCCCC--CCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCC-CcEEEEeccCC----
Confidence 0 00000000 000000 0001112222222221 223334445789999886 44443332110
Q ss_pred CccccccccccCCCCcccceeEEEEcC------CCCEEEEEeCCCeEEEEEcCCCCccee
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp------~g~~l~~g~~dg~v~iwd~~~~~~~~~ 316 (737)
. -..-+.|+..| .|.+|+.--.||+|..||..++...-.
T Consensus 242 --------------~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 242 --------------R-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred --------------c-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 1 11245566654 566666667799999999998764433
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.74 E-value=66 Score=28.23 Aligned_cols=112 Identities=7% Similarity=0.125 Sum_probs=67.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEEcccCccceEEEEEee---CCCCCEEEEEECCCcEEEEe
Q 004679 55 AISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVP---ETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~--------~~~~~~~~h~~~V~~v~~sp---~~~~~~l~sgs~dg~I~iwd 123 (737)
.-+|.....-|+.++.-|+|.|++..... .+..+ .-...|++++--+ +...+.|+.|+. ..|..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 34566656678888888999999876432 22333 2345677775444 333567777764 6799999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC--CcEEEEEeCCCcEEEEEcCCC
Q 004679 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
+..... ...+.-.+.|.++.+-.-+ ..-++..+-+..|.-||....
T Consensus 80 V~~N~d-----------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VENNSD-----------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred cccCch-----------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 986432 2233445677877774311 123334444577888876544
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.51 E-value=1.1e+02 Score=32.58 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004679 52 CVNAISWNSKGSLLISGS-----------DDT-HINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs-----------~dg-~V~vwd~~~--~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
....|+|.++|+++++-. ..+ .|.+++-.. ++ ....+ ...-...+.+++.++ + ++++ ..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~--G-lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG--G-VYVA-TP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC--C-EEEe-CC
Confidence 456899999999877653 223 677776432 33 22344 223345688999887 6 5554 34
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeecc----CCCceeEEEEecCCCcEEEEEe
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~s~s 167 (737)
....++.|... +.... ......+..+.. +......+.|.|+ +.+.++-+
T Consensus 90 ~~i~~~~d~~g-dg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDG-DDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCC-CCCCC-CccEEEEEccCCCCCcccccccCceECCC-CCEEEecc
Confidence 43333334432 11110 000001111211 1334678999994 45555444
No 435
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.76 E-value=23 Score=38.36 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=87.3
Q ss_pred hhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchh
Q 004679 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (737)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 444 (737)
.....++.++..+. |..++..+..++...+.+ ..+||||+.+++..+- .-.++.||..++.++|...++.
T Consensus 360 e~r~kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 360 EEREKGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGE---YPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCchHHHHH
Confidence 33445666666666 667899999999888665 6789999999997653 3466899999999999999998
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHh
Q 004679 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (737)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (737)
+.-..++..+.++..++.....-...-|....+..++..+-.
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 888888999999999988777777777877776655554443
No 436
>PRK10115 protease 2; Provisional
Probab=69.43 E-value=2.3e+02 Score=33.06 Aligned_cols=72 Identities=3% Similarity=-0.016 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECC-----CcE
Q 004679 51 GCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD-----AEV 119 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~d-----g~I 119 (737)
-.+..+.|+|||++|+.+ +....|++.|+.++..+... .... . ..++|.++ ++.| ++...+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~-~-~~~~w~~D--~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNV-E-PSFVWAND--SWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCc-c-eEEEEeeC--CCEEEEEEecCCCCCCCEE
Confidence 347778999999988855 23345889999888643322 1111 1 46999998 4544 443322 356
Q ss_pred EEEecCCC
Q 004679 120 RLFNLSRF 127 (737)
Q Consensus 120 ~iwd~~~~ 127 (737)
+.+++.+.
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 66676653
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=20 Score=34.72 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=73.0
Q ss_pred ccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCc
Q 004679 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (737)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 439 (737)
.....++..+++..+.+.. |.-+|..+..++-..+.. ..++.+|+.+.+.+. +--.+..||..+++++|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~-y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~---~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKR-YDDAIDCYSRAICINPTV------ASYYTNRALCHLKLK---HWEPVEEDCRRALQLDPN 76 (284)
T ss_pred chHHHHHHhccccccchhh-hchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhh---hhhhhhhhHHHHHhcChH
Confidence 3445666666666665555 677888888888766553 567889999988643 223678899999999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHh
Q 004679 440 SFRAHLYMSEALEQLCKYKEALDFAIAA 467 (737)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (737)
.++.+++....+.+...+.+++....+.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999988888887777776555444
No 438
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=68.29 E-value=1.4e+02 Score=30.11 Aligned_cols=159 Identities=16% Similarity=0.035 Sum_probs=93.0
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004679 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 172 (737)
..-+..+.++. ++...+..+.-++|.|+..++... +..+..-.+.-.++.. ++++...+..|..+
T Consensus 86 ~~l~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~--------~~~~lnt~gyaygv~v---sGn~aYVadlddgf 150 (370)
T COG5276 86 RDLFADVRVSE----EYVYVADWSSGLRIVDISTPDSPT--------LIGFLNTDGYAYGVYV---SGNYAYVADLDDGF 150 (370)
T ss_pred hhhhheeEecc----cEEEEEcCCCceEEEeccCCCCcc--------eeccccCCceEEEEEe---cCCEEEEeeccCcE
Confidence 45677788875 467777788889999999866432 1222222244556665 45788888877778
Q ss_pred EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004679 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (737)
.+.|+.....+.... ...........++.+ +++-.++..|+-+.+-|+.....-
T Consensus 151 LivdvsdpssP~lag----------------------rya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sP- 204 (370)
T COG5276 151 LIVDVSDPSSPQLAG----------------------RYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSP- 204 (370)
T ss_pred EEEECCCCCCceeee----------------------eeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCC-
Confidence 899998876431110 000011112345555 467777888999999999754311
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+.++-..+..+.++..+++--+++ -.+..+.+-|.....
T Consensus 205 ------------------vli~~~n~g~g~~sv~vsdnr~y~v--vy~egvlivd~s~~s 244 (370)
T COG5276 205 ------------------VLIGSYNTGPGTYSVSVSDNRAYLV--VYDEGVLIVDVSGPS 244 (370)
T ss_pred ------------------eEEEEEecCCceEEEEecCCeeEEE--EcccceEEEecCCCC
Confidence 0111111222467777766654443 445567777777644
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=68.20 E-value=65 Score=36.91 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=76.4
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C----eE-------EEEEcccCccceEEEEEe--eCCCCCE
Q 004679 52 CVNAISWNS--KGSLLISGSDDTHINVWSYSS-------R----KL-------LHSIETGHSANVFCTKFV--PETSDEL 109 (737)
Q Consensus 52 ~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~-------~----~~-------~~~~~~~h~~~V~~v~~s--p~~~~~~ 109 (737)
.|+-|.... +.+.|+.|..||.|.+|.+++ . .. ..-|...-...+++++++ .. ..+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--SRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--ceE
Confidence 577776654 557899999999999997631 1 00 001111234578999998 55 467
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC--Cc---EEEEEeCCCcEEEEEcC
Q 004679 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PH---VVWSASEDGTLRQHDFR 178 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~---~l~s~s~Dg~I~vwdl~ 178 (737)
+|.++....|.||-+.....+.. ...-..+..-|-+|.|-+.. +. .+++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~-------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFY-------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccc-------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 78887788888887765322211 11111255668889997643 22 77788999999999883
No 440
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=12 Score=37.86 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=65.2
Q ss_pred HHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHH
Q 004679 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (737)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 448 (737)
.++..+.. +-|..|++.+..-|...+. .|.+-.++|.||+++-... +....++.||..++.++|.+.++.+...
T Consensus 87 eGN~~fK~-Kryk~A~~~Yt~Glk~kc~--D~dlnavLY~NRAAa~~~l---~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 87 EGNEYFKE-KRYKDAVESYTEGLKKKCA--DPDLNAVLYTNRAAAQLYL---GNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HhHHHHHh-hhHHHHHHHHHHHHhhcCC--CccHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 34433333 3366788888877765544 4667788999999887753 3456789999999999999999999999
Q ss_pred HHHHHHhhHHHHH
Q 004679 449 EALEQLCKYKEAL 461 (737)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (737)
.++..+.+...+.
T Consensus 161 kc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 161 KCLLELERFAEAV 173 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998855443
No 441
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=65.83 E-value=27 Score=22.81 Aligned_cols=30 Identities=10% Similarity=0.436 Sum_probs=19.1
Q ss_pred ccCCceEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 004679 48 GHQGCVNAISWNSKGSLLI-SGSDD--THINVW 77 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~la-sgs~d--g~V~vw 77 (737)
...+.-....|||||+.|+ ++..+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999998776 44455 665555
No 442
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.36 E-value=1.6e+02 Score=29.74 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=98.7
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee--eccCCCceeEEEEecCCCcEEEEEeC
Q 004679 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
+-...+.++.|+|+. +.|++......-.+|=...++- +.. +.+. ...-.|++.. ++++.++--.
T Consensus 83 g~~~nvS~LTynp~~--rtLFav~n~p~~iVElt~~Gdl----------irtiPL~g~-~DpE~Ieyig-~n~fvi~dER 148 (316)
T COG3204 83 GETANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGDL----------IRTIPLTGF-SDPETIEYIG-GNQFVIVDER 148 (316)
T ss_pred cccccccceeeCCCc--ceEEEecCCCceEEEEecCCce----------EEEeccccc-CChhHeEEec-CCEEEEEehh
Confidence 445569999999994 6666666666655654443221 222 2221 2234567765 5567777778
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004679 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
++.+.++.+....... ....- ...+..........-.++|+|.+ ..|..+-.-.-+.||.....
T Consensus 149 ~~~l~~~~vd~~t~~~--------------~~~~~-~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 149 DRALYLFTVDADTTVI--------------SAKVQ-KIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred cceEEEEEEcCCccEE--------------eccce-EEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecC
Confidence 8899998887764220 00000 11122222224567889999985 57777777777778776633
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 004679 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~ 310 (737)
...-.......+ ... ..-.-..|.++.|++ .+..|+.+..++.+.-.|..-
T Consensus 213 ~~~l~~~~~~~~-~~~----------~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 213 PSSLSVHASLDP-TAD----------RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcccccccccCc-ccc----------cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 211110000000 000 000111377888987 566666666677877777654
No 443
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.23 E-value=2.9e+02 Score=32.72 Aligned_cols=148 Identities=13% Similarity=0.011 Sum_probs=79.0
Q ss_pred cCccceEEEEEe---eCCC-CCEEEEEECCCcEEEEecCCCCC----C-CCCCCCCCCceeecc---CCCceeEEEEecC
Q 004679 91 GHSANVFCTKFV---PETS-DELVVSGAGDAEVRLFNLSRFSG----R-GLDDNAITPSALYQC---HTRRVKKLAVEVG 158 (737)
Q Consensus 91 ~h~~~V~~v~~s---p~~~-~~~l~sgs~dg~I~iwd~~~~~~----~-~~~~~~~~~~~~~~~---h~~~v~~l~~~p~ 158 (737)
.-..+|..|+|. ...+ ...++..-....+.|+....... . ....-...++..+.. -..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456789999998 3210 11344555567788877332111 0 000011122333331 2346678999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004679 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+...||.....|...+|++........ ....+.....|.. +.... ....-..+.|.++. ..|++++. .
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~-------~~~~~~~~~~gsi--~~d~~-e~s~w~rI~W~~~~-~~lLv~~r-~ 224 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKS-------SNLRLSRNISGSI--IFDPE-ELSNWKRILWVSDS-NRLLVCNR-S 224 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCC-------cceeeccCCCccc--cCCCc-ccCcceeeEecCCC-CEEEEEcC-C
Confidence 888999999999999999932221100 0000000000111 01111 11345678898764 56666654 6
Q ss_pred cEEEEECCCCCC
Q 004679 239 FARLYDRRMLPP 250 (737)
Q Consensus 239 ~i~iwd~~~~~~ 250 (737)
.+.++|+++...
T Consensus 225 ~l~~~d~~~~~~ 236 (765)
T PF10214_consen 225 KLMLIDFESNWQ 236 (765)
T ss_pred ceEEEECCCCCc
Confidence 688999987654
No 444
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=64.46 E-value=43 Score=37.86 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=50.6
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEee-cCCCceEEEEec--CCCCeEEEEecCCcEEEEcC
Q 004679 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCH--PFDCVVATSGIDNTIKIWTP 698 (737)
Q Consensus 636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~-gH~~~V~~v~~s--p~~~~l~S~~~Dg~i~lW~~ 698 (737)
|.-++..+.-+.-..+.|||...+.+...-. ...+.|.++.|. ||++.+.+.|-...|.|+.-
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 4466776667777899999999988553332 567899999996 78899999999999999864
No 445
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.46 E-value=1.6e+02 Score=29.27 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=75.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004679 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (737)
++..-.-.++...+||..+.+.+.++. ....=..++ .+ +..|+.+.....|..+|..+... ...
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f~~----------~~~ 164 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SD--GKRLIMSDGSSRLYFLDPETFKE----------VRT 164 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--EC--SSCEEEE-SSSEEEEE-TTT-SE----------EEE
T ss_pred EEEEEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cC--CCEEEEECCccceEEECCcccce----------EEE
Confidence 444455678999999999999988884 334445555 34 46677766677888888775322 121
Q ss_pred ec--cCC---CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc---CCCCC
Q 004679 143 YQ--CHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA---DPPKQ 214 (737)
Q Consensus 143 ~~--~h~---~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 214 (737)
+. ... ..++-+.|- ++.+.|=.-....|...|..+++.. -.+++..= ..... .....
T Consensus 165 i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~------------~~iDls~L-~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 165 IQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV------------GWIDLSGL-RPEVGRDKSRQPD 229 (264)
T ss_dssp EE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE------------EEEE-HHH-HHHHTSTTST--T
T ss_pred EEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE------------EEEEhhHh-hhccccccccccc
Confidence 11 111 234556665 4455555555566777777776522 11111000 00000 00112
Q ss_pred ccceEEEEEecCCCcEEEEE
Q 004679 215 TLSLKSCDISSTRPHLLLVG 234 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t~ 234 (737)
..-.+.|+++|..+.+++||
T Consensus 230 ~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEe
Confidence 45689999999877777777
No 446
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.12 E-value=2.6e+02 Score=31.40 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=41.2
Q ss_pred CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004679 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 648 D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
-|.+.-||+.||+.+=+........-+. ..-.+.+++.+..||.++.+|.++|+++-..+
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 4778889999998876654322111121 11244577778889999999999999886544
No 447
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=31 Score=36.98 Aligned_cols=88 Identities=24% Similarity=0.150 Sum_probs=69.8
Q ss_pred HHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHH
Q 004679 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (737)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 446 (737)
.-.++.++..++ |--+|..+..++..++.. .+.|+||+.++...+ +-...+.||+.++.++|..+++.+.
T Consensus 119 K~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lg---d~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 119 KTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESLG---DWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred Hhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHh---hHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 334445555555 778899999999988775 578999999988543 2335678999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 004679 447 MSEALEQLCKYKEALDFA 464 (737)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (737)
+..+...++...+++.-.
T Consensus 189 RA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHhhccHHHHHHhh
Confidence 999999999999997433
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=61.63 E-value=18 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.0
Q ss_pred CEEEEecCCCcEEEEEcCcccEEEE
Q 004679 640 DYIASGSDDGRWFIWEKQTGRLIKM 664 (737)
Q Consensus 640 ~~l~sgs~D~~i~iWd~~t~~~~~~ 664 (737)
..++.++.|+.++..|..+|+.+=.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677888999999999999987644
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=60.68 E-value=43 Score=31.09 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=27.2
Q ss_pred ceEEEEecCCC------CeEEEEecCCcEEEEcCCCC
Q 004679 671 VVNCVQCHPFD------CVVATSGIDNTIKIWTPSAS 701 (737)
Q Consensus 671 ~V~~v~~sp~~------~~l~S~~~Dg~i~lW~~~~~ 701 (737)
.|.+++|||.| .+||.-..+|.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 79999999954 48999999999999998864
No 450
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=59.28 E-value=3.6e+02 Score=31.82 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=44.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc-------ceEEEEEeeC--------------CCCCEEEEEECCCcE
Q 004679 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA-------NVFCTKFVPE--------------TSDELVVSGAGDAEV 119 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~-------~V~~v~~sp~--------------~~~~~l~sgs~dg~I 119 (737)
.+..|+.++.++.|.-.|..+|+.+.++...... .+..+++... ..+..++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3567778888899999999999998887321110 1223333221 113478888889999
Q ss_pred EEEecCCCC
Q 004679 120 RLFNLSRFS 128 (737)
Q Consensus 120 ~iwd~~~~~ 128 (737)
.-.|..+++
T Consensus 273 iALDA~TGk 281 (764)
T TIGR03074 273 IALDADTGK 281 (764)
T ss_pred EEEECCCCC
Confidence 888887643
No 451
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=59.15 E-value=1.4e+02 Score=32.29 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.6
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004679 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
..|..++..+.. +.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 458999999975 8999999999999999975
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=57.91 E-value=61 Score=33.80 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEE---EE-eecCCCceEEEEecCCCCeEEEEecCCcEE
Q 004679 637 QRGDYIASGSDDGRWFIWEKQTGRLI---KM-LLGDEAVVNCVQCHPFDCVVATSGIDNTIK 694 (737)
Q Consensus 637 ~d~~~l~sgs~D~~i~iWd~~t~~~~---~~-l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~ 694 (737)
.+|.+++..-..+.|...+++++..+ .. +.+...++..|++.|||.++++.+.+|.|.
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 46778888877888888888755322 23 334566999999999999999888899764
No 453
>PRK10115 protease 2; Provisional
Probab=57.03 E-value=28 Score=40.44 Aligned_cols=65 Identities=9% Similarity=-0.063 Sum_probs=46.1
Q ss_pred ccCCCCEEEE-----ecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEecC-----CcEEEEcCCCC
Q 004679 635 LGQRGDYIAS-----GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGID-----NTIKIWTPSAS 701 (737)
Q Consensus 635 ~s~d~~~l~s-----gs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~~D-----g~i~lW~~~~~ 701 (737)
+||||++|+- |++.-.|+|-|+.+|+.+.....+.. ..++|++|++ ++++.-.+ ..|+.|++.++
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 6999998876 45556799999999975433322222 5699999997 55554433 36888888888
No 454
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.92 E-value=52 Score=34.54 Aligned_cols=121 Identities=24% Similarity=0.178 Sum_probs=85.1
Q ss_pred hhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCC---------cchhhhhhHHHHHhhhcccccchhhhHHHHHHhh
Q 004679 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP---------MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR 434 (737)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 434 (737)
.+....++..+..++ |..|...|..++.......+. .++..++-|.+++.+..+- ...|+..|...+
T Consensus 209 ~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~---~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE---YKEAIESCNKVL 284 (397)
T ss_pred HHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh---HHHHHHHHHHHH
Confidence 344445556666666 556666666555543322221 1123345577777776542 337799999999
Q ss_pred ccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004679 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (737)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
.++|.+.++.|....++..++.+..|...........|.+.-.......+...+
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999866655555554444
No 455
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.25 E-value=3e+02 Score=30.03 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=42.1
Q ss_pred CCCEEEEecCCCcEEEEEcCcc------cEEEEeecCCCceEEEEecCCC-CeEEEEecCCcEE
Q 004679 638 RGDYIASGSDDGRWFIWEKQTG------RLIKMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIK 694 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t~------~~~~~l~gH~~~V~~v~~sp~~-~~l~S~~~Dg~i~ 694 (737)
+|++|+++-..+.|...+++.. +....|.. .++|+.|+.+||| .+.+..+..|.++
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccc
Confidence 6899999999999998888644 22334444 6799999999997 6555555677654
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=56.06 E-value=85 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.5
Q ss_pred ceeEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 004679 281 HLTHVTFSPNG------EEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 281 ~i~~v~~sp~g------~~l~~g~~dg~v~iwd~~~ 310 (737)
.|..++|||-| .+|++-+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58999999943 4677778899999998764
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=56.01 E-value=22 Score=40.09 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=29.6
Q ss_pred CceEEEEEcC----CCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 004679 51 GCVNAISWNS----KGSLLISGSDDTHINVWSYSSRKLLHSI 88 (737)
Q Consensus 51 ~~V~~l~~s~----~g~~lasgs~dg~V~vwd~~~~~~~~~~ 88 (737)
..+..+++++ +..+|++-+.|+++|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4456666666 6789999999999999999999998776
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=55.99 E-value=1.1e+02 Score=30.89 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=59.4
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE------CCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004679 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------GDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 144 (737)
...|++||..+.+-..-- .+-.+.|+.+.|..+ ..+++.|. ....+..||..... ...+.
T Consensus 15 C~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~~-----------w~~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG-NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQT-----------WSSLG 80 (281)
T ss_pred CCEEEEEECCCCEeecCC-CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCCe-----------eeecC
Confidence 356999998877655433 456788999999865 46777764 34568889887532 22222
Q ss_pred c-----CCCceeEEEEecCCCc-EEEEEe-CC--CcEEEEEcCCCC
Q 004679 145 C-----HTRRVKKLAVEVGNPH-VVWSAS-ED--GTLRQHDFRQGS 181 (737)
Q Consensus 145 ~-----h~~~v~~l~~~p~~~~-~l~s~s-~D--g~I~vwdl~~~~ 181 (737)
. -.++|..+.+...+.. +.+.|. .+ ..|..||=....
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 2 2467888887554443 443433 23 346666644433
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=55.64 E-value=3e+02 Score=29.74 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=56.9
Q ss_pred EEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEe-cCCCCeEEEEecCCcEEEEcCCCCCCccccCCCC--CCChhh
Q 004679 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC-HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAA--GPDTAD 717 (737)
Q Consensus 641 ~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~-sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~--~~~~~~ 717 (737)
.++.|+.++++.||.=.+...-..+ .|.-.-..++. .....+|++-+.||.+.+==+-|++..-...... .-+.+.
T Consensus 302 ~llV~t~t~~LlVy~d~~L~WsA~l-~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~~r~~~y~~ 380 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTTLVWSAQL-PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPLESREIDYEE 380 (418)
T ss_pred EEEEEecCCeEEEEeCCeEEEecCC-CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCcccccCCHHH
Confidence 5899999999999976665555555 33322222222 2233499999999999987777777665544332 334444
Q ss_pred HHHHHHHHHHHhhh
Q 004679 718 VLEAMESNQRKLSR 731 (737)
Q Consensus 718 ~~~~~~~~~~~~~~ 731 (737)
..+-+++-|+.+.+
T Consensus 381 ~~~E~~~l~~~Ir~ 394 (418)
T PF14727_consen 381 LEEELKELEKEIRE 394 (418)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666666554
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=54.74 E-value=3.2e+02 Score=29.83 Aligned_cols=134 Identities=11% Similarity=0.110 Sum_probs=80.6
Q ss_pred cccccccccccccceeecccCCceEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-CeEEEEEcccCccceEEEEE
Q 004679 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-------LLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-------~lasgs~dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~ 101 (737)
-++|..-+.+++.+.++.-|... -+.|.|..+ .-+.|-.+..|.-.|.+- |..+... .....++.-.|
T Consensus 490 ~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~F 565 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKF 565 (776)
T ss_pred ccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee--eehhccccccc
Confidence 35667778899999999888765 477888532 233454555666566542 3222221 11222222223
Q ss_pred eeC--CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004679 102 VPE--TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 102 sp~--~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+.. ....+++.++..|-|++||--.... -..+.+....|..|....++..+|+||- ..+.+-|++-
T Consensus 566 ss~~tTesGyIa~as~kGDirLyDRig~rA----------KtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 566 SSGMTTESGYIAAASRKGDIRLYDRIGKRA----------KTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cccccccCceEEEecCCCceeeehhhcchh----------hhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 221 0135899999999999999543111 2335566778888999885555565553 5788888754
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=2.3e+02 Score=30.36 Aligned_cols=115 Identities=6% Similarity=0.056 Sum_probs=68.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004679 54 NAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 54 ~~l~~s~~g~~lasgs~dg~V~vwd~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
+.+-|....+.|+ |-..|.+.=|-+.. ......+.....++|.++.|++| ...++.--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~- 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQ- 101 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCchh-
Confidence 3444543333333 33345666665542 22334444556789999999999 688999999999999988432111
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004679 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
.......+..+..|....|.. + .-++--+. ..+-+|-+...
T Consensus 102 -----l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~-~G~e~y~v~pe 142 (657)
T KOG2377|consen 102 -----LEYTQECKTKNANILGFCWTS-S-TEIAFITD-QGIEFYQVLPE 142 (657)
T ss_pred -----hHHHHHhccCcceeEEEEEec-C-eeEEEEec-CCeEEEEEchh
Confidence 112233444556688899986 3 34444433 34666665443
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.30 E-value=26 Score=35.35 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=48.2
Q ss_pred CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEe------cCCcEEEEcCCCCCCccccCC
Q 004679 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG------IDNTIKIWTPSASVPSIVSGG 709 (737)
Q Consensus 648 D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~------~Dg~i~lW~~~~~~~~~~~~~ 709 (737)
=..||+||..+.+...--.+=++.|++++|.-+.+++|.|. ....+-.||+++.. +....+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCC
Confidence 35799999999988877777788999999997778888876 34568889999885 444444
No 463
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=51.56 E-value=2.9e+02 Score=32.18 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=83.9
Q ss_pred EEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004679 64 LLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 64 ~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
.+..|+.++.|.|+.-..+. ....+.......+.++.+++. -+..|.-||++-.+--.. .+. ...+|.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~----Slgagl~dgt~a~y~rap-~gS----wd~ep~ 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG----SLGAGLIDGTLAVYGRAP-SGS----WDGEPN 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc----ccccCccCCccccccCCC-CCC----CCCCCc
Confidence 47788999999999866222 222222334466778887775 355666677776653221 111 001123
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004679 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
..+.....+|.+.++.. . ++-++.+|.|.++...+.... ........+-..|++
T Consensus 620 ~~~~~g~lPvrsla~~e---d-~~was~gG~V~vi~~tt~~~~----------------------~~leahqee~~~Vth 673 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQE---D-FVWASEGGCVHVIPSTTFIRS----------------------WDLEAHQEEAHSVTH 673 (925)
T ss_pred cccccCCccccchhhhh---c-eeeeecCCceEEEechhcccc----------------------chhHHHHhhcceEEE
Confidence 33344566788888754 2 345777899999998775422 111112234456788
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 221 CDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+..... +=+++.. ....++.++..+..
T Consensus 674 m~~~~~-gVwvafa-sG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 674 MLYLDN-GVWVAFA-SGDEERLFHTETLW 700 (925)
T ss_pred EEeeCC-ceEEEEc-CCCEEEEecccccC
Confidence 877754 3333333 33456666666544
No 464
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.47 E-value=42 Score=34.20 Aligned_cols=115 Identities=23% Similarity=0.160 Sum_probs=83.9
Q ss_pred ccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCc
Q 004679 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (737)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 439 (737)
+.....+.+.++.++.+|+ |--+|+-|...+...+.. .+++.+|+++++...... .|-.||..++-+|..
T Consensus 94 L~~~SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA---~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFA---QAEEDCEAAIALDKL 163 (536)
T ss_pred HHhhHHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHH---HHHHhHHHHHHhhHH
Confidence 4444557778888888888 556777777666655433 457789998888544221 456899999999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHH
Q 004679 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (737)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (737)
.+++......+...++...++..-...+-.+.|....+-...+++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999888877776777777765554444443
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.04 E-value=5.2e+02 Score=31.88 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=31.1
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+..+|..+++...-..+.+-+..|+|.+||+...+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 444479999999999999999999999999998833
No 466
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.93 E-value=1.1e+02 Score=32.20 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=84.0
Q ss_pred hHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhH
Q 004679 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (737)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 445 (737)
+...+...+..+. +..++..+..++...+.. ..++.+++.+++.. ++.-.|+.++..++.++|....+++
T Consensus 5 l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~a~~ 74 (356)
T PLN03088 5 LEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAKAYL 74 (356)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 3344444444544 667888888888766553 34667777777754 4556778889999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004679 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (737)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
.+...+..++++..|.........+.|....+......+...+
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999888888888777655555554444
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=48.93 E-value=51 Score=21.48 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=21.5
Q ss_pred EEEEecCCCcEEEEEcCcccEEEEee
Q 004679 641 YIASGSDDGRWFIWEKQTGRLIKMLL 666 (737)
Q Consensus 641 ~l~sgs~D~~i~iWd~~t~~~~~~l~ 666 (737)
.+..++.||.++-.|.+||+.+=.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35566999999999999999886654
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.63 E-value=27 Score=37.48 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=50.1
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEecCCcEEEEcC
Q 004679 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTP 698 (737)
Q Consensus 636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~~Dg~i~lW~~ 698 (737)
.--..|+|.||..|-|++||.---.....|.|--+.|-.+..+.+|+ +|||+ -..+.|-|+
T Consensus 570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~ 631 (776)
T COG5167 570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDV 631 (776)
T ss_pred cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEec
Confidence 34457999999999999999988888888999999999999999998 55555 355666554
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.19 E-value=55 Score=31.29 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=42.7
Q ss_pred CEEEEecCCCcEEEEEcCc--ccEEEEeecCCCceEEEEecCCCCeEEEEecCC------cEEE---EcCC
Q 004679 640 DYIASGSDDGRWFIWEKQT--GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN------TIKI---WTPS 699 (737)
Q Consensus 640 ~~l~sgs~D~~i~iWd~~t--~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg------~i~l---W~~~ 699 (737)
++|+.+..-+.|.+|++.+ ..++.+|.-= +.|..++++..|+||+|==.+. -+|+ |...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 4444446667799999983 3466666654 8999999999999999965433 4566 6666
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=47.93 E-value=3e+02 Score=27.55 Aligned_cols=193 Identities=7% Similarity=0.019 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
..-..++-.|||..-+++...+.|--.|-.+|+....- .+....-..|..-|+ +...++-+.. .|.-.|-++..-.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpd--g~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPD--GSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCC--CCeeEecCcc-eeEEecCcccceE
Confidence 34566788889988888888888888888888866554 455666677888888 5655553333 3333333321110
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC---------CcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004679 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---------g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
. + ....+.-........|.+ .+++-+++... +.|++|+.-.
T Consensus 138 ~-----f--~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------------------- 187 (353)
T COG4257 138 R-----F--PLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------------------- 187 (353)
T ss_pred E-----e--ecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCC----------------------
Confidence 0 0 011122234456777887 45666666421 2233333322
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004679 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
....+.|+..|+ +..-++.-.+..|-..|..++.. ..+.. +. .+ +. .
T Consensus 188 -------------G~gpyGi~atpd-Gsvwyaslagnaiaridp~~~~a-ev~p~----P~--------~~----~~--g 234 (353)
T COG4257 188 -------------GGGPYGICATPD-GSVWYASLAGNAIARIDPFAGHA-EVVPQ----PN--------AL----KA--G 234 (353)
T ss_pred -------------CCCCcceEECCC-CcEEEEeccccceEEcccccCCc-ceecC----CC--------cc----cc--c
Confidence 234577888997 56777766777777777665521 11100 00 00 11 2
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004679 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
-..+--+|.|+.-++....+.++.||...
T Consensus 235 sRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 235 SRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccccCccCcEEEeccCCceeeEeCccc
Confidence 44455678888888877788888888766
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.70 E-value=4.9e+02 Score=29.98 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004679 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
-..|+|+++. |+.+..+.-.| ..+-.+.|+.+ ..|+....+|++++|++--
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~-~~lI~mgWs~~---eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKH-GELIGMGWSDD---EELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcC-CCeeeecccCC---ceEEEEeccceEEEeecch
Confidence 3468888864 55555553334 37889999987 6788889999999999863
No 472
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=47.68 E-value=5.6e+02 Score=30.59 Aligned_cols=155 Identities=10% Similarity=0.110 Sum_probs=95.0
Q ss_pred ceEEEEEcCC-CCEEEEEe----------CCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004679 52 CVNAISWNSK-GSLLISGS----------DDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 52 ~V~~l~~s~~-g~~lasgs----------~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
.|.++.|..| +.+++.|. ..|.|.|+.+..+..+... ...-.+.+.++..-. |.++| +-+..|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn---gkllA--~In~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN---GKLLA--GINQSV 850 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC---CeEEE--ecCcEE
Confidence 3555568777 66777774 2578888888774433333 111234555554433 34444 346789
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|++.... .++.-..+..++..+...- .+..++.|..-+++.+.-.+..+-.
T Consensus 851 rLye~t~~~----------eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~---------------- 903 (1096)
T KOG1897|consen 851 RLYEWTTER----------ELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGN---------------- 903 (1096)
T ss_pred EEEEccccc----------eehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCc----------------
Confidence 999998632 1455556777788888876 6688889988888888766654411
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
...++ ..-+..+++++.+-.+ ..++.+..+|.+.+-...
T Consensus 904 -----f~evA-rD~~p~Wmtaveil~~--d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 904 -----FEEVA-RDYNPNWMTAVEILDD--DTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred -----eEEee-hhhCccceeeEEEecC--ceEEeecccccEEEEEec
Confidence 01111 1123456777777754 467777777887776554
No 473
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.22 E-value=3e+02 Score=27.33 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe-cCCC
Q 004679 52 CVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRF 127 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd-~~~~ 127 (737)
.+.+.++++++..+|... ....|.++.. +....... ....+..-.|.++ +...+....+...+++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence 688999999999776554 3344555543 33333331 2236777889998 67777766667777764 2222
Q ss_pred CCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEE--eCCCcEEEEEcCCC
Q 004679 128 SGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQG 180 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~--s~Dg~I~vwdl~~~ 180 (737)
... +... .......|+.+.++|++.++.+.. ..++.|.+--+...
T Consensus 99 ~~~--------~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 99 TGE--------PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred cce--------eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 211 1111 111112899999999665544444 23467777665543
No 474
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=46.18 E-value=41 Score=35.30 Aligned_cols=99 Identities=24% Similarity=0.201 Sum_probs=74.7
Q ss_pred ccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCc
Q 004679 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (737)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 439 (737)
..........++.....|. +..+-+.+...|...+....+. ..+|.+|++..+..+. ...++.||..++.+|+.
T Consensus 246 ~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~n--aklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTN--AKLYGNRALVNIRLGR---LREAISDCNEALKIDSS 319 (486)
T ss_pred HHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchh--HHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH
Confidence 3444555556666667776 6788888888888777765444 4689999998886554 34678999999999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHH
Q 004679 440 SFRAHLYMSEALEQLCKYKEALDFA 464 (737)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (737)
..++......+...+.++.++..-.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887777776433
No 475
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=45.38 E-value=5.2e+02 Score=29.61 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCC----CCEEEEEEC-C---CcE
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETS----DELVVSGAG-D---AEV 119 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~----~~~l~sgs~-d---g~I 119 (737)
.+.|-++.|.++++.+++.-.+|.|.+||...+. .+..+...+...+..=+|-++.. .+++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4678899999999999999999999999993322 21122122332222113333221 244444433 2 346
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
+++.+....... ..+.....+........|+.+.|.+. . -.++.|.+|++...+
T Consensus 209 kL~~l~~~~~~~------~El~s~~~e~~~~~~s~f~Y~~G~LY-~-l~~~~i~~ysip~f~ 262 (670)
T PF10395_consen 209 KLISLSNESSSI------FELSSTILENFGLEDSKFCYQFGKLY-Q-LSKKTISSYSIPNFQ 262 (670)
T ss_pred EEEEeccCCcce------EEeehheeccCCcccceEEEeCCEEE-E-EeCCEEEEEEcCCce
Confidence 667662111111 11111111222233444444444433 2 267789999887654
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.58 E-value=1.9e+02 Score=32.95 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
..-++++.-+|.|.-++.++.||.|++|++......+.. ....+-..+.|... | |++...|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~~~~p~~nlv~tnh--g--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--EEAKPKENLVFTNH--G--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--hhcCCccceeeecc--c--eEEEeccchhheeecc
Confidence 345778888999999999999999999998765432211 11233345556554 2 6666777777777644
No 477
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=3.7e+02 Score=27.20 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=109.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc-cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
+-+..+.++ +++...+..+.-++|.|+.+-.....+-.-.. +--.++..+ |++...+..|.-+.+.|+..++.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs----Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS----GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec----CCEEEEeeccCcEEEEECCCCCC
Confidence 445556665 45666677777899999987543332211122 333444443 67888888777788899987554
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004679 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
... .............++.+ +++.+.+..|+.+.+.|+.....+..+ .. .
T Consensus 161 P~l-------agrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli------------~~-------~- 210 (370)
T COG5276 161 PQL-------AGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLI------------GS-------Y- 210 (370)
T ss_pred cee-------eeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEE------------EE-------E-
Confidence 321 11222223333567774 367777889999999999887643111 00 0
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc-cceeEEEEc
Q 004679 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFS 288 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~s 288 (737)
.....+.++..+++ +-+++- .+.-+.+-|....+....+.. ...+. ..++ .|.
T Consensus 211 ---n~g~g~~sv~vsdn--r~y~vv-y~egvlivd~s~~ssp~~~gs------------------yet~~p~~~s--~v~ 264 (370)
T COG5276 211 ---NTGPGTYSVSVSDN--RAYLVV-YDEGVLIVDVSGPSSPTVFGS------------------YETSNPVSIS--TVP 264 (370)
T ss_pred ---ecCCceEEEEecCC--eeEEEE-cccceEEEecCCCCCceEeec------------------cccCCccccc--cee
Confidence 01124566666653 233333 344466667665442222211 00111 0133 233
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 289 PNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
-.+++...+..+..+.+-|+.++.
T Consensus 265 Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 265 VSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred cccceeeeeccccCceeEeccCCC
Confidence 356677777777777777777643
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.72 E-value=1.4e+02 Score=24.21 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=32.9
Q ss_pred ecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEecCC-cEEEE
Q 004679 645 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDN-TIKIW 696 (737)
Q Consensus 645 gs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~~Dg-~i~lW 696 (737)
+..+|.+.-||..|++.---+.| -..-++|+.|||+. +|++=..-. ..|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 56789999999999986555555 33678999999998 555444333 45555
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=41.76 E-value=70 Score=19.23 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEE
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVW 77 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vw 77 (737)
..+|+++++|+++++=.....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777888777777666666654
No 480
>PLN02193 nitrile-specifier protein
Probab=41.70 E-value=5.2e+02 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=14.8
Q ss_pred CcEEEEEeCC----CcEEEEECCCCC
Q 004679 228 PHLLLVGGSD----AFARLYDRRMLP 249 (737)
Q Consensus 228 ~~~l~t~s~D----g~i~iwd~~~~~ 249 (737)
+.+++.++.+ ..+.+||+.+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCE
Confidence 4577777655 458888887643
No 481
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=39.11 E-value=46 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.8
Q ss_pred CCCEEEEecCCCcEEEEEcCc
Q 004679 638 RGDYIASGSDDGRWFIWEKQT 658 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t 658 (737)
++..|+.++.||.++..|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 577899999999999999865
No 482
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=37.80 E-value=4.2e+02 Score=26.29 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE-EEEccc-CccceEEEEEeeCCCCCEEEEEE---CCCcEEEEecC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLL-HSIETG-HSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd-~~~~~~~-~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~iwd~~ 125 (737)
.++.-+|++++...+....+...+++. ...+... ..+... -...|..++++|+ |..++... .++.|.+=-+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD--G~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD--GTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCC--CcEEEEEEecCCCCeEEEEEEE
Confidence 677788999988777777677777774 2333221 122111 1128999999999 67776655 35777777665
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-CCcEEE
Q 004679 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQ 174 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~v 174 (737)
....... ..-..+..........+..+.|.+++ .+++.+.. ++.+..
T Consensus 145 r~~~g~~-~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVP-RRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCc-ceeccceEecccccCcceeeeecCCC-EEEEEeCCCCCceeE
Confidence 4322100 00011223333345688999999844 55554443 333433
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=37.31 E-value=6.2e+02 Score=28.12 Aligned_cols=86 Identities=8% Similarity=0.176 Sum_probs=47.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccC-ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004679 59 NSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 59 s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 134 (737)
..++..++.+..+|.+....+.... .+..+ +. .....++.+..++ +.+|+.|+.-|-=.++.+....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~--g~~~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~~~------ 289 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL--GTLCSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISLSN------ 289 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE--EE--S-ESEEEEESTT---EEEEEESSS-EEEEEEESES------
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc--CCcCChhheEEEEcCC-CEEEEEEEecCCcEEEEEeCCC------
Confidence 3456788899999999988776533 22222 22 4566777777763 3488888875554444444211
Q ss_pred CCCCCceeeccCCCceeEEEEe
Q 004679 135 NAITPSALYQCHTRRVKKLAVE 156 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~~ 156 (737)
...+..+. .-++|.++.+.
T Consensus 290 --l~~~~~~~-N~~Pi~D~~v~ 308 (504)
T PF10433_consen 290 --LEVLDSLP-NWGPIVDFCVV 308 (504)
T ss_dssp --EEEEEEE-----SEEEEEEE
T ss_pred --cEEEEecc-CcCCccceEEe
Confidence 12233333 45678888775
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=37.19 E-value=2.2e+02 Score=23.02 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004679 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 70 ~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
.+|.+..||..+++....+ ..-...+.|+++++ ++.|+.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~--~~L~fpNGVals~d--~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLL--DGLYFPNGVALSPD--ESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEE--EEESSEEEEEE-TT--SSEEEEE
T ss_pred CCcCEEEEECCCCeEEEeh--hCCCccCeEEEcCC--CCEEEEE
Confidence 4688999999988754333 22346789999999 6766555
No 485
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=36.95 E-value=83 Score=19.05 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004679 51 GCVNAISWNSKGSLLISGSDDTHINVWS 78 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd 78 (737)
+.|.+|+..+ .+++.+...+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4577888764 5888888889999974
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=35.52 E-value=6e+02 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004679 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.|..++..+..+.+++...+|.|.+|++..+.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~ 222 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGG 222 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCCC
Confidence 49999999999999999999999999998633
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=35.42 E-value=8.1e+02 Score=28.95 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred CCCCEEEE-ecCCCcEEEEEcCcccEEEEeec----CCCceEEEEec-CCCC-eEE
Q 004679 637 QRGDYIAS-GSDDGRWFIWEKQTGRLIKMLLG----DEAVVNCVQCH-PFDC-VVA 685 (737)
Q Consensus 637 ~d~~~l~s-gs~D~~i~iWd~~t~~~~~~l~g----H~~~V~~v~~s-p~~~-~l~ 685 (737)
-.|.+++. |+.|+.++.+|.+||+.+=..+- ...+++ |. .+|+ |+|
T Consensus 689 TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~t---Y~~~~GkQYVv 741 (764)
T TIGR03074 689 TAGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMT---YMGKDGKQYVV 741 (764)
T ss_pred EcCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEE---EEecCCEEEEE
Confidence 35677776 78999999999999999866543 344554 44 4776 444
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=35.15 E-value=3.2e+02 Score=24.13 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=47.5
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC----CCcEEEEEeCCCcEEE
Q 004679 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQ 174 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~Dg~I~v 174 (737)
-+|... ...|+.++.-|.|.|++.......... ....+..+ .-...|++++-.+- ....|+.|+. ..+..
T Consensus 4 GkfDG~--~pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~lla 77 (136)
T PF14781_consen 4 GKFDGV--HPCLACATTGGKVFIHNPHERGQRTGR--QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLA 77 (136)
T ss_pred EEeCCC--ceeEEEEecCCEEEEECCCcccccccc--ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence 345554 357888888999999988753322110 11223333 35567777765442 3457767765 58999
Q ss_pred EEcCCCC
Q 004679 175 HDFRQGS 181 (737)
Q Consensus 175 wdl~~~~ 181 (737)
||+....
T Consensus 78 YDV~~N~ 84 (136)
T PF14781_consen 78 YDVENNS 84 (136)
T ss_pred EEcccCc
Confidence 9998875
No 489
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=35.00 E-value=1.1e+02 Score=31.94 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEE---cccCccceEEEEEeeC
Q 004679 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSI---ETGHSANVFCTKFVPE 104 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~---~~~~---~~~h~~~V~~v~~sp~ 104 (737)
..++|+|.|||+++++ ...|.|++++ ..+.. +..+ ..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3568899999877665 4588999988 33332 2222 1233456788888884
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=34.39 E-value=5.9e+02 Score=27.05 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=105.7
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe----eCCCCC---EEEEEECC---CcEEEE
Q 004679 56 ISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV----PETSDE---LVVSGAGD---AEVRLF 122 (737)
Q Consensus 56 l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s----p~~~~~---~l~sgs~d---g~I~iw 122 (737)
|-.+| ...+++...+++-+.+||+... .+..+. .+.++.+..- -. +. ++++...+ .+|++|
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~Gk-~lq~~~---~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLDGK-ELQSLP---VGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE----SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEE
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCCCc-EEEeec---CCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEE
Confidence 44555 4457888888999999998754 555552 2333333321 12 22 23333332 469999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEE--ecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004679 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+....+....... +...+..-...+..+++ ++.++ .+.+....+|.+..|-+.....- .-....
T Consensus 133 ~id~~~g~L~~v~~--~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-------~v~~~l--- 200 (381)
T PF02333_consen 133 RIDPDTGELTDVTD--PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-------KVSATL--- 200 (381)
T ss_dssp EEETTTTEEEE-CB--TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-------SEEEEE---
T ss_pred EecCCCCcceEcCC--CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-------cEeeEE---
Confidence 88742221100000 00011111234566666 34333 46777888999999988643210 000001
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+..+. ....+-.|...... ..|..+-.+.-|.-|+.+....... ..+.... ..+-.
T Consensus 201 --------VR~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~--------~~v~~~~------g~~l~ 256 (381)
T PF02333_consen 201 --------VREFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDR--------TLVASAD------GDGLV 256 (381)
T ss_dssp --------EEEEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S----------EEEEEBS------SSSB-
T ss_pred --------EEEec-CCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcc--------eeeeccc------ccccc
Confidence 11111 12367888888864 6888999998888888763321100 0000000 11112
Q ss_pred cceeEEEEc--CCC-CEEEEEeC-CCeEEEEEcCCCC
Q 004679 280 LHLTHVTFS--PNG-EEVLLSYS-GEHVYLMDVNHAG 312 (737)
Q Consensus 280 ~~i~~v~~s--p~g-~~l~~g~~-dg~v~iwd~~~~~ 312 (737)
..|..|++- +++ .||++++. ++...+|+.....
T Consensus 257 aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 257 ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 246667664 344 36666665 7899999987643
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=34.09 E-value=80 Score=25.37 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004679 283 THVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
+.+.++|++++|++++. .+.|++|..+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
No 492
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=33.96 E-value=5.5e+02 Score=26.57 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCceeEEEEecCCCcEEEEEeCCCc------EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004679 147 TRRVKKLAVEVGNPHVVWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 147 ~~~v~~l~~~p~~~~~l~s~s~Dg~------I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
-+.+..|.+.+.+ ..+++.+.+|. +..+++...... ........ ...++...-..+ .....-.-+
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~L~~~~G~~~---~~~~~D~Eg 89 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGG--IGGVTILD---MIPLRDPDGQPF---PKNGLDPEG 89 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCC--ccceEecc---ceeccCCCCCcC---CcCCCChhH
Confidence 4567889998744 45667778887 666665541100 00000000 000000000000 001123456
Q ss_pred EEEecCCCcEEEEEeCC------CcEEEEECCCCCCcccccCCCCCCCCccccccccc-cCCCCcccceeEEEEcCCCCE
Q 004679 221 CDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTHVTFSPNGEE 293 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~ 293 (737)
|++.++ +.++++.-.+ ..|+.++.. ++.+..+..+.. +.+... .........+..|+++|+|+.
T Consensus 90 i~~~~~-g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~-------~~~~~~~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 90 IAVPPD-GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA-------FLPDANGTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred eEEecC-CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc-------cccccCccccccCCCCeEEEEECCCCCE
Confidence 777554 5677766666 788888876 555444421110 000000 001122335899999999998
Q ss_pred EEEEeCC
Q 004679 294 VLLSYSG 300 (737)
Q Consensus 294 l~~g~~d 300 (737)
|+++...
T Consensus 161 l~~~~E~ 167 (326)
T PF13449_consen 161 LFAAMES 167 (326)
T ss_pred EEEEECc
Confidence 8777664
No 493
>PRK13684 Ycf48-like protein; Provisional
Probab=33.82 E-value=5.6e+02 Score=26.63 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004679 50 QGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~v-wd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
.+.+.++.+.|++.+++++. .|.+.. +| ..++.-..+...-...++++.+.++ +..++.+ ..|.+.+=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d~-- 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPDD-- 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCC--CCEEEEe-cCCEEEEccCCC--
Confidence 35688999999887776664 455543 22 2233233332345578899999998 5666554 567664321221
Q ss_pred CCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004679 129 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
+.. +.....- ......+..+.+.+ ++.++ .++.+|.+.
T Consensus 245 G~s-----W~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~ 283 (334)
T PRK13684 245 LES-----WSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLL 283 (334)
T ss_pred CCc-----cccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEE
Confidence 111 1111100 01123467888888 44544 455667554
No 494
>PLN02193 nitrile-specifier protein
Probab=31.82 E-value=7.3e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEccc---Cc-cceEEEEEeeCCCCCEEEEEECCC-----cEEEEecCC
Q 004679 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETG---HS-ANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSR 126 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~---h~-~~V~~v~~sp~~~~~~l~sgs~dg-----~I~iwd~~~ 126 (737)
++.+++.|+.+ ..+.+||+.+.+-...- .. .. ..-.+++. -+ +.+++.|+.++ .+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~-~~~~~P~~R~~h~~~~-~~--~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT-PVEEGPTPRSFHSMAA-DE--ENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcC-cCCCCCCCccceEEEE-EC--CEEEEECCCCCCCCcceEEEEECCC
Confidence 45666666654 35778888876543211 11 11 11122222 23 46777777543 356677664
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=31.48 E-value=2.3e+02 Score=30.26 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=91.9
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEcccCc----cceE-EEEEeeCCCCCEEEEEECCC
Q 004679 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHS----ANVF-CTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-~~~~~h~----~~V~-~v~~sp~~~~~~l~sgs~dg 117 (737)
..+..--..|..+-..|||+.|..-+. .++.|+++.+..... ++..... ..|+ .+..... +.-++.+..||
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G--g~SLLv~~~dG 290 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG--GFSLLVVHEDG 290 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC--ceeEEEEcCCC
Confidence 334445567888889999997765544 578899887654321 2211111 1122 1111222 56678888899
Q ss_pred cEEEE-ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004679 118 EVRLF-NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 118 ~I~iw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
-|.-| |.+...+.. ...++.++-...++..+.-.. +.+-+++-+..|++..+.....+..
T Consensus 291 ~vsQWFdvr~~~~p~-----l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l------------- 351 (733)
T COG4590 291 LVSQWFDVRRDGQPH-----LNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL------------- 351 (733)
T ss_pred ceeeeeeeecCCCCc-----ceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcce-------------
Confidence 88877 444322211 111222222223333333222 4456777778888888775554422
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
... .......-++++|. +.++++- +.|.|+++.+.+..
T Consensus 352 ------------L~~-~~~~~~~~~~~Sp~-~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 352 ------------LFE-RAYQAPQLVAMSPN-QAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred ------------ehh-hhhcCcceeeeCcc-cchheee-cCCceEEEEecCCC
Confidence 000 01124456788996 4566554 45889999888654
No 496
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=30.63 E-value=1.9e+02 Score=29.67 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE-----EEEeeCCCCCEEEEEECCCcEEEEe
Q 004679 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-----TKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~-----v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
|++|...++|.+|+|.-.-..|.+.|-.+|+.+..+ .+....=.. .+|-.+ -.++-.+..++.|.++|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l-gG~~~~df~~~~~~f~~QHd--ar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL-GGKRNSDFTLPATNFSWQHD--ARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe-CCCCCCcccccCCcEeeccC--CEEeccCCCCCEEEEEc
No 497
>PLN02153 epithiospecifier protein
Probab=30.44 E-value=6.4e+02 Score=26.19 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEEEcccCccce----EEEEEeeCCCCCEEEEEECC-----CcEEEEec
Q 004679 61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSANV----FCTKFVPETSDELVVSGAGD-----AEVRLFNL 124 (737)
Q Consensus 61 ~g~~lasgs~d-------g~V~vwd~~~~~~~~~~~~~h~~~V----~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~ 124 (737)
++++++.|+.+ ..+.+||+.+.+-...-........ .+++.. + +.+++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-G--TKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-C--CEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 3577888877653321100100111 112222 2 4677777753 24677777
Q ss_pred CC
Q 004679 125 SR 126 (737)
Q Consensus 125 ~~ 126 (737)
.+
T Consensus 109 ~t 110 (341)
T PLN02153 109 VK 110 (341)
T ss_pred CC
Confidence 64
No 498
>PLN02153 epithiospecifier protein
Probab=30.26 E-value=6.4e+02 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeE
Q 004679 61 KGSLLISGSDD-----THINVWSYSSRKL 84 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~ 84 (737)
++++++.|+.+ ..+.+||..+.+-
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 45666777653 3477888877543
No 499
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.00 E-value=5.4e+02 Score=25.22 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=50.3
Q ss_pred eeecc--cCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE----EcccCccceEEEEEeeCCCCCEEEEEECC
Q 004679 44 RELEG--HQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 44 ~~l~~--H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
..+.| ..+.+..|.|.| +|++.+. +.++.|...|..++..... +...-...-..+.|+|-- +.|=..+.+
T Consensus 18 ~~vtGL~~ge~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~a--DRlRvvs~~ 94 (236)
T PF14339_consen 18 VAVTGLAAGESLVGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAA--DRLRVVSNT 94 (236)
T ss_pred EEeecccCCCeEEEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeecccccccccCceEEEecCccc--CcEEEEccC
Confidence 34555 457899999999 5555555 5668999999999875433 222233446788999984 444444445
Q ss_pred CcEEEEecCC
Q 004679 117 AEVRLFNLSR 126 (737)
Q Consensus 117 g~I~iwd~~~ 126 (737)
|.=.-.++..
T Consensus 95 GqNlR~npdt 104 (236)
T PF14339_consen 95 GQNLRLNPDT 104 (236)
T ss_pred CcEEEECCCC
Confidence 5444444443
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.98 E-value=7.9e+02 Score=27.14 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.6
Q ss_pred cceEEEEEecCC--CcEEEEEeCCCcEEEEECCCCCCc
Q 004679 216 LSLKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 216 ~~v~~i~~sp~~--~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
..+...+|+|+. ...|..-+.|..||+||+.....+
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 456778999975 567888889999999999865544
Done!