Query 004679
Match_columns 737
No_of_seqs 358 out of 2677
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:39:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004679.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1976-1979//hhsearch_pdb/004679hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 364.6 27.8 262 40-342 605-903 (1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 353.1 32.9 530 41-716 7-554 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 350.0 38.8 232 27-315 38-275 (611)
4 1nr0_A Actin interacting prote 1.0 1 1 343.9 37.6 117 595-716 461-586 (611)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 337.1 36.4 498 22-697 32-577 (577)
6 1vyh_C Platelet-activating fac 1.0 1 1 336.5 37.0 291 42-699 100-410 (410)
7 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 329.8 37.7 513 23-715 632-1222(1249)
8 3iz6_a 40S ribosomal protein R 1.0 1 1 327.6 35.9 229 37-312 53-282 (380)
9 1got_B GT-beta; complex (GTP-b 1.0 1 1 320.2 38.9 214 40-311 45-258 (340)
10 3fm0_A Protein CIAO1; WDR39,SG 1.0 1 1 317.9 35.2 219 39-310 4-225 (345)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=364.65 Aligned_cols=262 Identities=18% Similarity=0.197 Sum_probs=206.0
Q ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 43225412567854799985999979999499919999789971787871367635489999208999899999899939
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~dg~I 119 (737)
......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+ +.++++++.|+.|
T Consensus 605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKV 681 (1249)
T ss_dssp CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEECC--CCEEEEEECCCEE
T ss_conf 5322787166664899998799998999948894999998999788876-067777899999269--9989998189959
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 999568898888789988873010147886569999259-9959999918995999986799888999888875422999
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
++||+.++ +.+..+.+|...|.+++|+|. +..++++++.|+.|++||+.++..
T Consensus 682 ~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---------------- 735 (1249)
T 3sfz_A 682 KIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---------------- 735 (1249)
T ss_dssp EEEETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE----------------
T ss_pred EEEECCCC----------CEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH----------------
T ss_conf 99877999----------3689995899737999984089965999980897099998999634----------------
Q ss_pred ECCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC-------------CCCCCC
Q ss_conf 2468952210479999534279997249991999983999399997798988544467899-------------999765
Q 004679 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVN 265 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~-------------~~~~~~ 265 (737)
+.....|...+.+++|+|+ +.++++++.|+.|++||++.......+..... ...++
T Consensus 736 ---------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 804 (1249)
T 3sfz_A 736 ---------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC- 804 (1249)
T ss_dssp ---------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC-
T ss_pred ---------HHEECCCCCCEEEEEEECC-CCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEE-
T ss_conf ---------2201277797889999259-99899997898599996888865530202321024677644565017999-
Q ss_pred CCCCC-----------------------CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 43455-----------------------2357887653445999938999899995799199999289994002531189
Q 004679 266 YFCPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (737)
Q Consensus 266 ~~~~~-----------------------~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 322 (737)
.+.+. .....+|.. .+.+++|+|++.++++++.|+.|++|++.++.......++..
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCC
T ss_conf 9978998899975895999995689723577478777-607999827888899994798699998678956532278766
Q ss_pred CCEEEEECCCCCCCCCCCCC
Q ss_conf 87136534687886679997
Q 004679 323 ASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 323 ~~~~~~~~p~~~~~~~~~~~ 342 (737)
.+..++|+|+...+......
T Consensus 884 ~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEECC
T ss_conf 56899998999989999589
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=353.06 Aligned_cols=530 Identities=18% Similarity=0.236 Sum_probs=291.7
Q ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 32254125678547999859999799994999199997899717878713676354899992089998999998999399
Q 004679 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 41 ~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~dg~I~ 120 (737)
+..+.|+||++.|++++|+|||++||+|+.|+.|+|||. +++++..+ .+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l-~gh~~~V~~l~fspd--g~~las~~~d~~i~ 82 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPD--GQTIASASDDKTVK 82 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEECCCEEE
T ss_conf 894398789985799999899899999938998999979-99789999-689899899999899--99999996989799
Q ss_pred EEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC-----------
Q ss_conf 995688988887899888730101478865699992599959999918995999986799888999888-----------
Q 004679 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS----------- 189 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~----------- 189 (737)
+||... +++..+.+|...|.+++|+| ++.++++++.|+.+++|+.............
T Consensus 83 vWd~~~-----------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 83 LWNRNG-----------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150 (577)
T ss_dssp EEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEECCC-----------CEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECC
T ss_conf 998999-----------78999978999889999989-999899980798335202355200110477774355542037
Q ss_pred -------CCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf -------8754229992468952210479999534279997249991999983999399997798988544467899999
Q 004679 190 -------HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
.......++.... ........+...+.++.++|+ +.++++++.|+.|++||... +.+..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w~~~~-~~~~~~-------- 217 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNG-QLLQTL-------- 217 (577)
T ss_dssp SSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTTS-CEEEEE--------
T ss_pred CCCCEECCCCCCEECCCCCE---EEEEECCCCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCC-CEEEEE--------
T ss_conf 76320025553100000000---000002687763566541699-77899985999899994999-689999--------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 76543455235788765344599993899989999579919999928999400253118987136534687886679997
Q 004679 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
.+|.. .|.+++|+|++.+|++++.|+.|++|+... +.......+...+..++|+|+...+......
T Consensus 218 ------------~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 218 ------------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp ------------ECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------------ECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECC
T ss_conf ------------46889-889999979999999991899899995999-7999980688987999996899999999599
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77656664334420146530044699984100269998620221245540266999985202356688987630235630
Q 004679 343 HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKND 422 (737)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (737)
.....-. ..+...... ..+.+.....++......+.....+ . ..+-|+-.
T Consensus 284 ~~i~~w~--~~~~~~~~~------------~~h~~~v~~~~~~~~~~~l~t~~~d-------------~---~i~~w~~~ 333 (577)
T 2ymu_A 284 KTVKLWN--RNGQLLQTL------------TGHSSSVWGVAFSPDGQTIASASDD-------------K---TVKLWNRN 333 (577)
T ss_dssp SCEEEEE--TTSCEEEEE------------CCCSSCEEEEEECTTSSEEEEEETT-------------S---CEEEEETT
T ss_pred CEEEEEE--CCCCEEEEE------------ECCCCCEEEEEECCCCCEEEEEECC-------------C---EEEEEECC
T ss_conf 9799994--899589997------------0688976999999999999999699-------------9---59999699
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 33448988876035875520267999999998458999999988302699954668899989765556643029999999
Q 004679 423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDG 502 (737)
Q Consensus 423 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 502 (737)
.. ....+...... .......|+...++.+..+....+|+.... ......
T Consensus 334 ~~-----~~~~~~~~~~~------------------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~~~~- 382 (577)
T 2ymu_A 334 GQ-----HLQTLTGHSSS------------------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLT- 382 (577)
T ss_dssp SC-----EEEEECCCSSC------------------------EEEEEECTTSSEEEEEETTSEEEEEETTCC-EEEEEE-
T ss_pred CC-----EEEEEECCCCC------------------------EEEEEECCCCCEEEEEECCCEEEEECCCCC-EEEEEC-
T ss_conf 97-----25787478897------------------------799999899999999969998999908997-899852-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 98899986742223321113456889999999998999971000120146788999885321111246640332257998
Q 004679 503 GARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDS 582 (737)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (737)
.+...+. ...-.+++...+....+.....++. . +.+.-.+.. ..
T Consensus 383 -----~~~~~v~-------~~~~s~dg~~l~~~~~d~~v~~~~~---------~-------------~~~~~~~~~--~~ 426 (577)
T 2ymu_A 383 -----GHSSSVR-------GVAFSPDGQTIASASDDKTVKLWNR---------N-------------GQLLQTLTG--HS 426 (577)
T ss_dssp -----CCSSCEE-------EEEECTTSSCEEEEETTSEEEEECT---------T-------------CCEEEEEEC--CS
T ss_pred -----CCCCCEE-------EEEECCCCCEEEEEECCCEEEEEEC---------C-------------CCEEEEECC--CC
T ss_conf -----7889748-------9999899999999949998999969---------9-------------978989628--89
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCEE
Q ss_conf 53234689999999999989998887643342007896221531110110001588989999069981999976865288
Q 004679 583 ARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLI 662 (737)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~ 662 (737)
..-+..+-...+..+.++..++.+..|....+....+.+|...++++. |+||+++|++|+.|++|+|||. +++++
T Consensus 427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWNR-NGQLL 501 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEE----ECCCCCEEEEEECCCEEEEECC-CCCEE
T ss_conf 975799998999999999399989999799988999727899778999----9699999999919897999939-99789
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 886358776589994389995999736991999739999995113799999803
Q 004679 663 KMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716 (737)
Q Consensus 663 ~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~ 716 (737)
..+.+|.+.|++++|+|++++|||++.||+|++|+. +++++.++.||.++++.
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 554 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEE
T ss_conf 998679999899999189999999989699999969-99789897188888789
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=349.98 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=183.4
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE--EEEEECCCCCCCEEEEEEEEC
Q ss_conf 111222200010243225412567854799985999979999499919999789971--787871367635489999208
Q 004679 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~i~~sp~ 104 (737)
.+.+.+|+ ....+...+|.+|...|++++|+|+|++||+|+.|+.|+|||+.+++ ....+ .+|..+|.+++|+|+
T Consensus 38 ~~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 38 GTSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE 114 (611)
T ss_dssp TTEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT
T ss_pred CCEEEEEC--CCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEE-CCCCCCEEEEEECCC
T ss_conf 99799945--787242737658998659999999996899994899789948989841566762-255784489998999
Q ss_pred CCCCEEEEEECC----CCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 999899999899----9399995688988887899888730101478865699992599959999918995999986799
Q 004679 105 TSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 105 ~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~ 180 (737)
+.+|++++.+ +.|++||... ....+.+|...|.+++|+|+.+..|++++.|++|++||....
T Consensus 115 --g~~l~~~~~~~~~~~~v~~wd~~~------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 115 --SKRIAAVGEGRERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp --SCEEEEEECCSSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred --CCEEEEEECCCCCEEEEEEEECCC------------CCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCC
T ss_conf --997999989977366999963899------------763254788983699988999829999928980999979997
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 88899988887542299924689522104799995342799972499919999839993999977989885444678999
Q 004679 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 260 (737)
+. +.....|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+..
T Consensus 181 ~~-------------------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~---- 230 (611)
T 1nr0_A 181 KF-------------------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFED---- 230 (611)
T ss_dssp EE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBC----
T ss_pred EE-------------------------EEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEECC----
T ss_conf 57-------------------------6652002571699999799-99899998999199988999828665136----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCE
Q ss_conf 9976543455235788765344599993899989999579919999928999400
Q 004679 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
..+...+|.. .|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 231 ---------~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 231 ---------DSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp ---------TTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------CCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf ---------6432356678-78999997999999999089809999688870134
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=343.93 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=88.5
Q ss_pred CCCCCCCCCC-CCCCCCCCCCC--EEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCC-CCEEEE--EECC
Q ss_conf 9999998999-88876433420--0789622153111011000158898999906998199997686-528888--6358
Q 004679 595 SPSSSSQNDR-IPYQPETVIDM--KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-GRLIKM--LLGD 668 (737)
Q Consensus 595 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t-~~~~~~--l~gH 668 (737)
..+.++..++ +.+|....... .+. .+|...++++. |+||+++|++|+.|++|++|++.+ ++++.. +.+|
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~----fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA----FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE----ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEE----ECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEEC
T ss_conf 899996899739999945992224101-57788607999----9899998999948998999885778722321026404
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEECCCCCC-CC-CCCCCC-CCCCHH
Q ss_conf 7765899943899959997369919997399999-95-113799-999803
Q 004679 669 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV-PS-IVSGGA-AGPDTA 716 (737)
Q Consensus 669 ~~~V~~v~~sp~~~~l~S~~~Dg~i~iW~~~~~~-~~-~~~~~~-~~~~~~ 716 (737)
.+.|++++|+||+++|||+|.|++|++|++.++. +. .+..+| .+.++.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~ 586 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS 586 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEE
T ss_conf 664258998998997999979972999978875556326444676567118
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=337.07 Aligned_cols=498 Identities=19% Similarity=0.253 Sum_probs=272.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 88772111222200010243225412567854799985999979999499919999789971787871367635489999
Q 004679 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~ 101 (737)
.+.+.++.+++|+. +.+...+|.+|.+.|++++|+|++++|++++.|+.|++||. +++.+..+ .+|...|.+++|
T Consensus 32 as~~~d~~v~iWd~---~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~-~~~~~~v~~~~~ 106 (577)
T 2ymu_A 32 ASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAF 106 (577)
T ss_dssp EEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEE
T ss_pred EEEECCCEEEEEEC---CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEE-ECCCCCEEEEEE
T ss_conf 99938998999979---99789999689899899999899999999969897999989-99789999-789998899999
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCCCCC------------------------------CCCCCCCEEECCCCCCEE
Q ss_conf 20899989999989993999956889888878------------------------------998887301014788656
Q 004679 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLD------------------------------DNAITPSALYQCHTRRVK 151 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------------------------------~~~~~~~~~~~~h~~~v~ 151 (737)
+|+ +.+|++++.|+.+++|+.......... ............+...+.
T Consensus 107 s~d--~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (577)
T 2ymu_A 107 SPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 184 (577)
T ss_dssp CTT--SSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEE
T ss_pred CCC--CCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEEEECCCCCCCEE
T ss_conf 899--998999807983352023552001104777743555420377632002555310000000000000268776356
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------------------CCCCCCCCCCEEEEECCCCCEEECCCCCC
Q ss_conf 999925999599999189959999867998889------------------99888875422999246895221047999
Q 004679 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP------------------PAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 152 ~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
++.++| ++.++++++.|+.|++|+........ .+..+..+....+|+... ..+.....
T Consensus 185 ~~~~~~-~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---~~~~~~~~ 260 (577)
T 2ymu_A 185 GVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTG 260 (577)
T ss_dssp EEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---CEEEEECC
T ss_pred EEEECC-CCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC---CEEEEEEC
T ss_conf 654169-97789998599989999499968999946889889999979999999991899899995999---79999806
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 95342799972499919999839993999977989885444678999997654345523578876534459999389998
Q 004679 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 293 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~ 293 (737)
|...+.+++|+|+ +..+++++.|+.|++|+... +....+ .+|.. .|.+++|+|++.+
T Consensus 261 ~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~-~~~~~~--------------------~~h~~-~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 261 HSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNG-QLLQTL--------------------TGHSS-SVWGVAFSPDGQT 317 (577)
T ss_dssp CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTS-CEEEEE--------------------CCCSS-CEEEEEECTTSSE
T ss_pred CCCCEEEEEECCC-CCEEEEEECCCEEEEEECCC-CEEEEE--------------------ECCCC-CEEEEEECCCCCE
T ss_conf 8898799999689-99999995999799994899-589997--------------------06889-7699999999999
Q ss_pred EEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99995799199999289994002531189871365346878866799977765666433442014653004469998410
Q 004679 294 VLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNS 373 (737)
Q Consensus 294 l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (737)
+++++.|+.|++|+... ........+...+..++|+|+...++............. .+....
T Consensus 318 l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~--~~~~~~--------------- 379 (577)
T 2ymu_A 318 IASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQ--------------- 379 (577)
T ss_dssp EEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET--TCCEEE---------------
T ss_pred EEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC--CCCEEE---------------
T ss_conf 99996999599996999-725787478897799999899999999969998999908--997899---------------
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 02699986202212455402669999852023566889876302356303344898887603587552026799999999
Q 004679 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQ 453 (737)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 453 (737)
.+..+... .
T Consensus 380 ----------------~~~~~~~~----v--------------------------------------------------- 388 (577)
T 2ymu_A 380 ----------------TLTGHSSS----V--------------------------------------------------- 388 (577)
T ss_dssp ----------------EEECCSSC----E---------------------------------------------------
T ss_pred ----------------EECCCCCC----E---------------------------------------------------
T ss_conf ----------------85278897----4---------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84589999999883026999546688999897655566430299999999889998674222332111345688999999
Q 004679 454 LCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDG 533 (737)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (737)
....+.|+...++++..+....+|+.... ...... .+...+.. ..-.+++...+
T Consensus 389 ------------~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~~~~~------~~~~~v~~-------~~~s~d~~~l~ 442 (577)
T 2ymu_A 389 ------------RGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLT------GHSSSVWG-------VAFSPDDQTIA 442 (577)
T ss_dssp ------------EEEEECTTSSCEEEEETTSEEEEECTTCC-EEEEEE------CCSSCEEE-------EEECTTSSEEE
T ss_pred ------------EEEEECCCCCEEEEEECCCEEEEEECCCC-EEEEEC------CCCCCEEE-------EEECCCCCEEE
T ss_conf ------------89999899999999949998999969997-898962------88997579-------99989999999
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99989999710001201467889998853211112466403322579985323468999999999998999888764334
Q 004679 534 PRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVI 613 (737)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (737)
....+.....++. .+.....+..... .-+..+-...+..+.++..++.+..|....
T Consensus 443 ~~~~d~~v~~w~~----------------------~~~~~~~~~~~~~--~v~~~~~spd~~~las~~~d~~i~iw~~~~ 498 (577)
T 2ymu_A 443 SASDDKTVKLWNR----------------------NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNG 498 (577)
T ss_dssp EEETTSEEEEEET----------------------TSCEEEEEECCSS--CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EECCCCEEEEEEC----------------------CCCEEEEECCCCC--CEEEEEECCCCCEEEEEECCCEEEEECCCC
T ss_conf 9939998999979----------------------9988999727899--778999969999999991989799993999
Q ss_pred CCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 20078962215311101100015889899990699819999768652888863587765899943899959997369919
Q 004679 614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI 693 (737)
Q Consensus 614 ~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i 693 (737)
++.+.+.+|.+.++++. |+||+++|++|+.|+.|+|||. +++++.+|.||.++|++++|+||+++|+|+|.|++|
T Consensus 499 ~~~~~~~~h~~~v~~l~----~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp CEEEEEECCSSCEEEEE----ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEE----ECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 78999867999989999----9189999999989699999969-997898971888887899996899999999089999
Q ss_pred EEEC
Q ss_conf 9973
Q 004679 694 KIWT 697 (737)
Q Consensus 694 ~iW~ 697 (737)
++||
T Consensus 574 ~~Wd 577 (577)
T 2ymu_A 574 KLWN 577 (577)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9969
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=336.53 Aligned_cols=291 Identities=21% Similarity=0.329 Sum_probs=211.9
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 22541256785479998599997999949991999978997178787136763548999920899989999989993999
Q 004679 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 42 ~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~dg~I~i 121 (737)
....+.+|.++|++++|+|++.+|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+ +.+|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCCE
T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEECCCEEEE
T ss_conf 30766166776899999699998999938985999989999377888-166786878998599--999999918981999
Q ss_pred EECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 95688988887899888730101478865699992599959999918995999986799888999888875422999246
Q 004679 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
||+... +++..+.+|...|.+++|+| ++.++++++.|+.|++||++.+...
T Consensus 177 wd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~------------------ 227 (410)
T 1vyh_C 177 WDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV------------------ 227 (410)
T ss_dssp EETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE------------------
T ss_pred EECCCC----------CEEEEECCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCEE------------------
T ss_conf 958998----------26699828999778999967-9999999968996999989999489------------------
Q ss_pred CCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89522104799995342799972499919999839993999977989885444678999997654345523578876534
Q 004679 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
.....|...+.++.|+|+ +.++++++.|+.|++||+++......+ .+|.. .
T Consensus 228 -------~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~-~ 278 (410)
T 1vyh_C 228 -------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH-V 278 (410)
T ss_dssp -------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-C
T ss_pred -------EEEECCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCCCCEEEEE--------------------CCCCC-E
T ss_conf -------999278862899999899-999999918990999989897436673--------------------37874-5
Q ss_pred EEEEEECCC--------------------CCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 459999389--------------------998999957991999992899940025311898713653468788667999
Q 004679 282 LTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (737)
Q Consensus 282 i~~v~~sp~--------------------g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 341 (737)
|.+++|+|+ +.+|++|+.|+.|++||+.++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~------------------------------ 328 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------------------------------ 328 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT------------------------------
T ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC------------------------------
T ss_conf 89999858655431012125555566788889999938984999988999------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 77765666433442014653004469998410026999862022124554026699998520235668898763023563
Q 004679 342 IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKN 421 (737)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (737)
T Consensus 329 -------------------------------------------------------------------------------- 328 (410)
T 1vyh_C 329 -------------------------------------------------------------------------------- 328 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 03344898887603587552026799999999845899999998830269995466889998976555664302999999
Q 004679 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKAND 501 (737)
Q Consensus 422 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (737)
T Consensus 329 -------------------------------------------------------------------------------- 328 (410)
T 1vyh_C 329 -------------------------------------------------------------------------------- 328 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 99889998674222332111345688999999999899997100012014678899988532111124664033225799
Q 004679 502 GGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGD 581 (737)
Q Consensus 502 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (737)
T Consensus 329 -------------------------------------------------------------------------------- 328 (410)
T 1vyh_C 329 -------------------------------------------------------------------------------- 328 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCE
Q ss_conf 85323468999999999998999888764334200789622153111011000158898999906998199997686528
Q 004679 582 SARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL 661 (737)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~ 661 (737)
.+...+.+|.+.++++. |++++++|++|+.|+.|++||+.++++
T Consensus 329 --------------------------------~~~~~~~~h~~~v~~v~----~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 329 --------------------------------MCLMTLVGHDNWVRGVL----FHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp --------------------------------EEEEEEECCSSCEEEEE----ECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred --------------------------------CEEEEEECCCCCEEEEE----ECCCCCEEEEEECCCEEEEEECCCCCE
T ss_conf --------------------------------66999977888589999----949989999995979299998999906
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 88863587765899943899959997369919997399
Q 004679 662 IKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 699 (737)
Q Consensus 662 ~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~iW~~~ 699 (737)
+..+.+|.+.|++++|+|++++|+|+|.||+|++|+++
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 89984777868999982899999999279948997379
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=329.83 Aligned_cols=513 Identities=17% Similarity=0.213 Sum_probs=316.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 87721112222000102432254125678547999859999799994999199997899717878713676354899992
Q 004679 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~s 102 (737)
+.+.++.+++|+ ..+.+...++.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+
T Consensus 632 s~~~d~~i~vw~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~ 708 (1249)
T 3sfz_A 632 SCGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFT 708 (1249)
T ss_dssp EEETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEC
T ss_pred EEECCCEEEEEE--CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEE
T ss_conf 994889499999--8999788876067777899999269998999818995999877999368999-5899737999984
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 08999899999899939999568898888789988873010147886569999259995999991899599998679988
Q 004679 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~ 182 (737)
|+.+..++++++.|+.|++||+..+ .+...+.+|...|.+++|+| ++.++++++.|+.|++||+..+..
T Consensus 709 ~~~~~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 709 NKSNHLLLATGSNDFFLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSSSCCEEEEEETTSCEEEEETTSS----------SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCCCCEEEEEEECCCEEEEEECCCC----------CHHHEECCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCC
T ss_conf 0899659999808970999989996----------34220127779788999925-999899997898599996888865
Q ss_pred CCC----------------------CCCCC---------CCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCEE
Q ss_conf 899----------------------98888---------75422999246895221047999953427999724999199
Q 004679 183 CPP----------------------AGSSH---------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (737)
Q Consensus 183 ~~~----------------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l 231 (737)
... ..... ......+|+...+..... ....|...+.+++|+|+ +.++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l 855 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY-DHLA 855 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS-TTEE
T ss_pred CCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE-ECCCCCCCEEEEEECCC-CCEE
T ss_conf 530202321024677644565017999997899889997589599999568972357-74787776079998278-8889
Q ss_pred EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99839993999977989885444678999997654345523578876534459999389998999957991999992899
Q 004679 232 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 232 ~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++++.|+.|++||+.+...+..+ .+|.. .|++++|+|++.++++++.|+.|++|++...
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred EEEECCCEEEEEECCCCCEEEEC--------------------CCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 99947986999986789565322--------------------78766-5689999899998999958972898874665
Q ss_pred CCC-------------------------------------EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 940-------------------------------------0253118987136534687886679997776566643344
Q 004679 312 GGR-------------------------------------AMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG 354 (737)
Q Consensus 312 ~~~-------------------------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 354 (737)
... .........+..++|+|+...++.....+........
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~--- 991 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP--- 991 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT---
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECC---
T ss_conf 20102113310368975998689981377624898447650897256727899995899779998699988999757---
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 20146530044699984100269998620221245540266999985202356688987630235630334489888760
Q 004679 355 EVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR 434 (737)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 434 (737)
.+... ..+..+...+.
T Consensus 992 ---------------------~~~~~--------~~~~~h~~~v~----------------------------------- 1007 (1249)
T 3sfz_A 992 ---------------------NNRVF--------SSGVGHKKAVR----------------------------------- 1007 (1249)
T ss_dssp ---------------------TTSCE--------EECCCCSSCCC-----------------------------------
T ss_pred ---------------------CCCEE--------EECCCCCCCEE-----------------------------------
T ss_conf ---------------------87234--------43036777168-----------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35875520267999999998458999999988302699954668899989765556643029999999988999867422
Q 004679 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVL 514 (737)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 514 (737)
.....|....++++..+....+|+..++....... +...+.
T Consensus 1008 --------------------------------~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~v~ 1048 (1249)
T 3sfz_A 1008 --------------------------------HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA-------HQETVK 1048 (1249)
T ss_dssp --------------------------------CEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC-------CSSCEE
T ss_pred --------------------------------EEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-------CCCCEE
T ss_conf --------------------------------99998999989998699879999879996689852-------787389
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 23321113456889999999998999971000120146788999885321111246640332257998532346899999
Q 004679 515 SLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSG 594 (737)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (737)
.+ .+ ..++. ....+ .+....++....+.. ...+.. ....-+..+-...+
T Consensus 1049 ~~---~~----~~~~~-l~~~~--------~dg~v~vwd~~~~~~-------------~~~~~~--~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1049 DF---RL----LQDSR-LLSWS--------FDGTVKVWNVITGRI-------------ERDFTC--HQGTVLSCAISSDA 1097 (1249)
T ss_dssp EE---EE----CSSSE-EEEEE--------SSSEEEEEETTTTCC-------------CEEEEC--CSSCCCCEEECSSS
T ss_pred EE---EE----CCCCC-EEEEE--------CCCCEEEEECCCCCE-------------EEEECC--CCCCEEEEEECCCC
T ss_conf 99---99----08995-89997--------889689988898865-------------588746--68848999998999
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEE--------
Q ss_conf 99999-989998887643342007896221531110110001588989999069981999976865288886--------
Q 004679 595 SPSSS-SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-------- 665 (737)
Q Consensus 595 ~~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l-------- 665 (737)
..+.+ +.++.+.+|..........+.+|.+.++++. |+||++++++|+.||.|++||+.+++++..+
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~----~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1173 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEE----ECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC----
T ss_pred CEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEE----ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 9899984999489987898500125506877679999----979999899982899799998899945788514444421
Q ss_pred -ECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCH
Q ss_conf -35877658999438999599973699199973999999511379999980
Q 004679 666 -LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (737)
Q Consensus 666 -~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~ 715 (737)
.+|.+.|++++|+|++++|++++ |.|++|++.++++.....+|.++++
T Consensus 1174 ~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~ 1222 (1249)
T 3sfz_A 1174 TATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLK 1222 (1249)
T ss_dssp ---CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCC
T ss_pred CCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 025674289999978999899779--8599989888950046400477532
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=327.57 Aligned_cols=229 Identities=24% Similarity=0.366 Sum_probs=187.5
Q ss_pred CCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECC
Q ss_conf 10243225412567854799985999979999499919999789971787871367635489999208999899999899
Q 004679 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~d 116 (737)
.......++|++|.+.|++++|+|++++|++|+.|++|++||..+++....+ ..|...|.+++|+|+ +.+|++|+.|
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d 129 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLD 129 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSS
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEE-ECCCCCEEEEEECCC--CCEEEEEECC
T ss_conf 5213982000045347789999689998999918980999878888601488-559987899999899--9989995479
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 93999956889888878998887301014788656999925999599999189959999867998889998888754229
Q 004679 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
+.+++|++...... .........+.+|...+.++.|.|.++..+++++.|++|++||+.++... .
T Consensus 130 ~~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~ 194 (380)
T 3iz6_a 130 SACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------S 194 (380)
T ss_dssp SCCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------E
T ss_pred CCEEEEECCCCCCC---CCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEE------------E
T ss_conf 85899989777555---67733126406897546899996489978999779981999986779578------------9
Q ss_pred EEECCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9924689522104799995342799972499919999839993999977989-885444678999997654345523578
Q 004679 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.+ .......|...+.+++|++.+++++++|+.|+.|++||++.. ..+..+ .
T Consensus 195 ~~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~ 246 (380)
T 3iz6_a 195 IF--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------H 246 (380)
T ss_dssp EE--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------C
T ss_pred EE--------ECCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE--------------------C
T ss_conf 96--------0566788756769999206999989999789869999788897346998--------------------8
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 8765344599993899989999579919999928999
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+|.. .|++++|+|++.+|++++.|+.|++||+.++.
T Consensus 247 ~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 247 GHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred CCCC-CEEEEEEECCCCEEEEECCCCEEEEEECCCCC
T ss_conf 7488-75799991699969998389969999888996
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=320.15 Aligned_cols=214 Identities=23% Similarity=0.339 Sum_probs=181.7
Q ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 43225412567854799985999979999499919999789971787871367635489999208999899999899939
Q 004679 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~dg~I 119 (737)
.+...+|++|.+.|++++|+|++++|++|+.|+.|++||..+++.+..+ ..|...|.+++|+|+ +.++++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred CHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEE-ECCCCCEEEEEECCC--CCEEEEEECCCEE
T ss_conf 2110010487783689998899999999818896899989998743376-038861889999999--9999998089819
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99956889888878998887301014788656999925999599999189959999867998889998888754229992
Q 004679 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|++...... ......+.+|...+.++.|++ ++ .+++++.|+.|++||+.++..
T Consensus 122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~----------------- 176 (340)
T 1got_B 122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ----------------- 176 (340)
T ss_dssp EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-----------------
T ss_pred EEEECCCCCCC------CEEEEEECCCCCCEEEEEECC-CC-CEEEEECCCCEEEEECCCCCE-----------------
T ss_conf 99979668886------136778448776389999879-99-699998999299998999918-----------------
Q ss_pred CCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46895221047999953427999724999199998399939999779898854446789999976543455235788765
Q 004679 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+.....|...+.+++|+|+ +.++++++.|+.|++||++.......+ .+|..
T Consensus 177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~ 227 (340)
T 1got_B 177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES 227 (340)
T ss_dssp --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred --------EEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEE--------------------CCCCC
T ss_conf --------8997699986689999899-999999938993999778998167897--------------------48768
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 34459999389998999957991999992899
Q 004679 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|++++|+|++.+|++++.|+.|++||+.++
T Consensus 228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -CEEEEEECCCCCEEEEECCCCCEEEEECCCC
T ss_conf -7799999499998999748981999988999
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=317.89 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=178.6
Q ss_pred CCCCCEEECCCCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE--EEECCCCCCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 2432254125678-5479998599997999949991999978997178--787136763548999920899989999989
Q 004679 39 RLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 39 ~~~~~~~l~~H~~-~I~~i~~s~~g~~latgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~i~~sp~~~~~~l~sgs~ 115 (737)
.++.+.++.+|.+ .|.+++|+|++++||+|+.|+.|++||+.++... ..+..+|...|.+++|+|+ +.+|++++.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEET
T ss_pred CEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCC--CCEEEEEEC
T ss_conf 177730034888776799999999999999818983999874798523435503246886899999799--999999988
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 99399995688988887899888730101478865699992599959999918995999986799888999888875422
Q 004679 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|+.+++|++..... .+...+.+|...|.+++|+| ++.+|++++.|+.|++||++.....
T Consensus 82 D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~------------ 140 (345)
T 3fm0_A 82 DATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY------------ 140 (345)
T ss_dssp TSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred CCCEEEEECCCCCE--------EEEEECCCCCCCCEEEEEEC-CCCEEEEEECCCEEEEEECCCCCCE------------
T ss_conf 99099998169976--------99898137878826999928-9999999989990999887899980------------
Q ss_pred EEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99924689522104799995342799972499919999839993999977989885444678999997654345523578
Q 004679 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
..+.....|...+.+++|+|+ +.+|++++.|+.|++||.+....... . .+ .
T Consensus 141 ----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~-----------~-----~~--~ 191 (345)
T 3fm0_A 141 ----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCC-----------A-----TL--E 191 (345)
T ss_dssp ----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEE-----------E-----EE--C
T ss_pred ----------EEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEEECCCCEEEE-----------E-----EE--C
T ss_conf ----------899995276788689999999-99999994898099999369977999-----------9-----92--5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 87653445999938999899995799199999289
Q 004679 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|.. .|.+++|+|++++|++++.|+.|++|+...
T Consensus 192 ~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 192 GHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCC-CEEEEEECCCCCEEEEEECCCEEEEECCCC
T ss_conf 7778-567999999999899980899299951536
Done!