Query 004680
Match_columns 737
No_of_seqs 432 out of 2829
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:50:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004680.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1980-1984//hhsearch_pdb/004680hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 1.0 1 1 321.8 26.2 375 160-651 64-492 (506)
2 3hsi_A Phosphatidylserine synt 1.0 1 1 293.4 25.6 366 130-647 22-417 (458)
3 1xdp_A Polyphosphate kinase; P 1.0 1 1 202.2 19.5 282 160-647 345-645 (687)
4 2o8r_A Polyphosphate kinase; s 1.0 1 1 190.9 20.0 283 160-647 350-651 (705)
5 2fk9_A Protein kinase C, ETA t 1.0 1 1 143.7 11.4 90 8-105 57-156 (157)
6 4ggj_A Mitochondrial cardiolip 1.0 1 1 138.1 11.9 134 161-376 45-179 (196)
7 3b7y_A E3 ubiquitin-protein li 1.0 1 1 127.9 11.4 99 7-106 37-153 (153)
8 1gmi_A Protein kinase C, epsil 1.0 1 1 127.5 11.4 92 9-107 36-134 (136)
9 1wfj_A Putative elicitor-respo 1.0 1 1 126.7 8.9 100 7-110 27-134 (136)
10 4ggj_A Mitochondrial cardiolip 1.0 1 1 126.6 10.6 134 430-649 44-177 (196)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=1.00 E-value=1 Score=321.83 Aligned_cols=375 Identities=17% Similarity=0.170 Sum_probs=217.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCC
Q ss_conf 12489999999970254899999413883479618812210001999999999998829--9499988079887100014
Q 004680 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEG--VAVRIMLWDDETSLPIIKN 237 (737)
Q Consensus 160 ~~~~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~G--V~VriLvwD~~~s~~~~~~ 237 (737)
|+++|++|+++|.+||++|+|+.|.+. +++. .+.+|.++|++||+|| |+||||+ |..++.....
T Consensus 64 g~~~~~~l~~~I~~Ak~~I~i~~y~~~------~~d~------~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 64 TKRLLAKMTENIGNATRTVDISTLAPF------PNGA------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSC------CCHH------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECC------CCCH------HHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCCCCC-
T ss_conf 799999999999973349999996212------7973------8999999999998579975899998-3763345556-
Q ss_pred CCCCCCCCHHHHHHHHCCC------CEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 4554566188899872299------3999858898888864457310699628876854664248997563378977679
Q 004680 238 KGVMRTHDEDAFAYFKHTK------VICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDT 311 (737)
Q Consensus 238 ~g~~~~~~~~~~~~l~~~~------v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt 311 (737)
.+....+.|+..+ +.+....... ....+.+||+|++|||++ ++|+||+|+++++|.+
T Consensus 130 ------~~~~~~~~L~~~g~~~~~~~~~~~~~~~~-~~~~~~r~H~K~~ViD~~----------~a~~Gg~Nl~~d~y~~ 192 (506)
T 1v0w_A 130 ------IPSKYRDELTAKLGKAAENITLNVASMTT-SKTAFSWNHSKILVVDGQ----------SALTGGINSWKDDYLD 192 (506)
T ss_dssp ------HHHHHHHHHHHHHGGGGGGEEEEEEEECS-BTTTTBCBCCCEEEETTT----------EEEEESCCCCHHHHTS
T ss_pred ------CCHHHHHHHHHCCCCEEECCCCCCCCCCC-CCCCCCCCEEEEEEECCC----------EEEEECCCCCCCCCCC
T ss_conf ------87999999985155311057621133323-688521220269998786----------8996045367410035
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHHHHHHHHHHHCCCC--CCC---CC-C--
Q ss_conf 997544457887555765433346765689999997110111050878999999999996220699--987---67-8--
Q 004680 312 EKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDP--SLL---VP-I-- 383 (737)
Q Consensus 312 ~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~--~~~---~~-~-- 383 (737)
. ..+|||++++++||+|.++...|.++|+..... .+. .+ .
T Consensus 193 ~--------------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~ 240 (506)
T 1v0w_A 193 T--------------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWFAASGN 240 (506)
T ss_dssp S--------------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTTEEEEESTT
T ss_pred C--------------------------------CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC
T ss_conf 7--------------------------------89805889999787899999999999766406667756631466654
Q ss_pred -CCCCCC---CCCCCCCCCCCCCCCCCEEE--------EEEEECCCCCH-------------HHHCCCC------CCHHH
Q ss_conf -898988---99999899888888987025--------99921685510-------------0001485------21338
Q 004680 384 -SSIPNL---GHKSNIIPSSNYFNQRNWKV--------QVFRSIDHVSA-------------SQLAKNL------TVERS 432 (737)
Q Consensus 384 -~~~~~~---~~p~~~~p~~~~~~~~~~~v--------qi~rs~~~~~~-------------~~~p~~~------~~~~s 432 (737)
...+.+ ..|. ..+ ..+...+ |++++.|.... .+.|... ..+.+
T Consensus 241 ~~~~~~~~~~~~p~-----~~~-~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~d~P~~~~~~~~~~~~~~ 314 (506)
T 1v0w_A 241 AGCMPTMHKDTNPK-----ASP-ATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNP 314 (506)
T ss_dssp CCCCTTHHHHHSCS-----SCC-CCSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSSTTCCCTTTSCHHHHHHCH
T ss_pred CCCCCHHCCCCCCC-----CCC-CCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 44570002345765-----676-556663001245441000478610014567543431000256555667655444463
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--
Q ss_conf 999999999952136999512235785332334457877752799999999999818981899991599999999995--
Q 004680 433 IHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP-- 510 (737)
Q Consensus 433 I~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~~~~~~-- 510 (737)
+..+|+++|.+|+++|||++|||.+-..- ...+...+..+|..++++| |+|+||+|..++......+
T Consensus 315 ~~~~~~~~I~~A~~~I~I~tq~~~pyf~p---------~~~~~~~i~~aL~~Aa~rG--V~VrIl~~~~~~~~~~~~a~~ 383 (506)
T 1v0w_A 315 EESALRALVASAKGHIEISQQDLNATCPP---------LPRYDIRLYDALAAKMAAG--VKVRIVVSDPANRGAVGSGGY 383 (506)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCSSCCTTT---------SCSCCHHHHHHHHHHHHTT--CEEEEEECCGGGCC------C
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHH
T ss_conf 89999999857586799996365440067---------5321089999999998689--808999589884177777678
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C--CCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf --01255667886998999999999965998-8--976725873042034320599635999999982567764203420
Q 004680 511 --VQDILHWTRETMAMMYKLIGEAIQESGQV-G--HPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFM 585 (737)
Q Consensus 511 --~~~i~~~~~~t~~~~~~~~~~~L~~~gv~-~--~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~ 585 (737)
...++.. ...+. ..-.|.+.|+. . .+.+.+.++.++... .+.|.. ...
T Consensus 384 ~~~~~L~~~-~~~l~-----~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~----~~~~~~-----------------~~~ 436 (506)
T 1v0w_A 384 SQIKSLSEI-SDTLR-----NRLANITGGQQAAKTAMCSNLQLATFRSSP----NGKWAD-----------------GHP 436 (506)
T ss_dssp CCCSCTHHH-HHHHH-----HHHHHHHTSHHHHHHHHHHHEEEEECCSSS----SSSCTT-----------------SCC
T ss_pred HHHHHHHHH-HHHHC-----CCCHHCCCCCCHHCCCCCCCEEEEECCCCC----CCCCCC-----------------CCC
T ss_conf 878888775-44220-----120010356200001456660454203567----644446-----------------765
Q ss_pred EEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 466656999924299970558773655899973027997239987861235899999999999629
Q 004680 586 VYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHTG 651 (737)
Q Consensus 586 iyvHSK~mIVDD~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~ehlG 651 (737)
.++|+|+|||||++++|||+|||.||| +|+++.+++++. .+++.....+.+.++.+
T Consensus 437 ~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~-----a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 437 YAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEA-----AKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp CCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHH-----HHHHHHHTHHHHHHHHG
T ss_pred CCCEEEEEEECCCEEEEECCCCCCCCH-----HHCEEEECCHHH-----HHHHHHHHHHHHHHHCC
T ss_conf 641577999878589973787897235-----350557628999-----99999999898874236
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=1.00 E-value=1 Score=293.42 Aligned_cols=366 Identities=14% Similarity=0.076 Sum_probs=225.7
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHH
Q ss_conf 55556951589531578999999976799912489999999970254899999413883479618812210001999999
Q 004680 130 FPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGE 209 (737)
Q Consensus 130 ~p~~~gn~v~ly~d~~~~~~~~p~~~~~~~~~~~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~ 209 (737)
||. .||+|++|.+| .++|+++.++|.+|+++|+|+.|.|. +++ .+..|.+
T Consensus 22 ~~~-~~n~v~~l~~g----------------~~~~~~l~~~I~~A~~~I~i~~~~~~-------~d~------~g~~l~~ 71 (458)
T 3hsi_A 22 LAL-QAEQIEFLGSS----------------AEFKTQIIELIRNAKKRIYVTALYWQ-------KDE------AGQEILD 71 (458)
T ss_dssp EEC-CGGGEEECCCH----------------HHHHHHHHHHHHTCSSEEEEEESCBC-------SSH------HHHHHHH
T ss_pred CCC-CCCEEEEEECH----------------HHHHHHHHHHHHHCCCEEEEEEEEEE-------CCC------HHHHHHH
T ss_conf 645-48869999388----------------99999999999840888999999972-------592------7999999
Q ss_pred HHHHHHHC--CCEEEEEEECCCCCC-CCCCCCCCCCC-CCHHHHHHHHCCC--CEEE--EC--CCCCCCCCCCCCCCCCE
Q ss_conf 99999882--994999880798871-00014455456-6188899872299--3999--85--88988888644573106
Q 004680 210 LLKHKAEE--GVAVRIMLWDDETSL-PIIKNKGVMRT-HDEDAFAYFKHTK--VICK--LC--PRLHHKFPTLFAHHQKT 279 (737)
Q Consensus 210 lL~~kA~~--GV~VriLvwD~~~s~-~~~~~~g~~~~-~~~~~~~~l~~~~--v~v~--~~--~r~~~~~~~~~~hHqK~ 279 (737)
+|.+||+| ||+|+||+ |+.... ... |.... ........|...+ |+|. ++ |.. ....++++|+|+
T Consensus 72 aL~~aa~r~~GV~Vril~-D~~~~~r~~~---g~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~--~~~~~~r~H~Ki 145 (458)
T 3hsi_A 72 EIYRVKQENPHLDVKVLI-DWHRAQRNLL---GAEKSATNADWYCEQRQTYQLPDDPNMFFGVPIN--TREVFGVLHVKG 145 (458)
T ss_dssp HHHHHHHHSTTCEEEEEE-ETTGGGSCCC--------CCHHHHHHHHHHHHTCTTCCCCEEEECSS--SSGGGCCEECCE
T ss_pred HHHHHHHCCCCCEEEEEE-ECCCCCCCCC---CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCCCEEEE
T ss_conf 999998558998799999-7765644445---6555566689999998508995695500288544--340147111159
Q ss_pred EEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECHH
Q ss_conf 99628876854664248997563378977679997544457887555765433346765689999997110111050878
Q 004680 280 ITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEA 359 (737)
Q Consensus 280 vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gpa 359 (737)
+|||++ + ++||+||++.++... .....|.|+ .+.||.
T Consensus 146 ~viD~~----------v-~~~G~Ni~d~y~~~~------------------------------~~~~~drd~--~i~g~~ 182 (458)
T 3hsi_A 146 FVFDDT----------V-LYSGASINNVYLHQF------------------------------EKYRYDRYQ--KITHAE 182 (458)
T ss_dssp EEETTE----------E-EEESCCBSTTTTTCS------------------------------SCCEECCEE--EEECHH
T ss_pred EEECCC----------E-EEEEEECCHHHHCCC------------------------------CCCCCCHHH--HHCCCH
T ss_conf 998898----------8-998113678984678------------------------------645752255--652816
Q ss_pred HHHHHHHHH--HHHHHCCCCCCC---CCCC-CCC-------CCCCCCCCCCCCCC-CCCCCEEEEEEEECCCCCHHHHCC
Q ss_conf 999999999--996220699987---6788-989-------88999998998888-889870259992168551000014
Q 004680 360 AWDVLTNFE--QRWTKQCDPSLL---VPIS-SIP-------NLGHKSNIIPSSNY-FNQRNWKVQVFRSIDHVSASQLAK 425 (737)
Q Consensus 360 a~dl~~~F~--~rW~~~~~~~~~---~~~~-~~~-------~~~~p~~~~p~~~~-~~~~~~~vqi~rs~~~~~~~~~p~ 425 (737)
+.|....|. ..|+...-..+. .+.. ... ..+.... ....+ ...+...+++.... ++.
T Consensus 183 ~~D~~~~~~~~~~~~g~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~v~p~~--~~~----- 253 (458)
T 3hsi_A 183 LADSMVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNG--EYSLKSAVKLPNVLSVSPLF--GLG----- 253 (458)
T ss_dssp HHHHHHHHHHHTTCCTTTCEESSSSCCCCGGGTHHHHHHHHHHHHHHC--CCCCSSCBSSCSSCEEEEEE--EES-----
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEECCC--CCC-----
T ss_conf 889999998764016742111477742540566777899998631011--35665557887629996077--889-----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 85213389999999999521369995122357853323344578777527999999999998189818999915999999
Q 004680 426 NLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGV 505 (737)
Q Consensus 426 ~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~ 505 (737)
..+..+..+++++|.+|+++|||+|+||+++. .+..+|..++++| |+|.|++|......
T Consensus 254 --~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-----------------~~~~aL~~Aa~rG--V~VrIi~~~~~and 312 (458)
T 3hsi_A 254 --ASGNELNQVIEDLFLQVQKKLVICTPYFNFPR-----------------TLQHKIATLLENG--KRVEIIVGDKVAND 312 (458)
T ss_dssp --SSSCHHHHHHHHHHHTCSSEEEEECSSSCCCH-----------------HHHHHHHHHHTTT--CEEEEEEECGGGST
T ss_pred --CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCH-----------------HHHHHHHHHHHCC--CEEEEEECCCCCCC
T ss_conf --73158999999999834658999982347999-----------------9999999998779--82999989821157
Q ss_pred CCCCCCHHHHHHHHHHH--HHHHHHH---HHHHHHCC-CCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99995012556678869--9899999---99999659-988976725873042034320599635999999982567764
Q 004680 506 PTSDPVQDILHWTRETM--AMMYKLI---GEAIQESG-QVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQ 579 (737)
Q Consensus 506 ~~~~~~~~i~~~~~~t~--~~~~~~~---~~~L~~~g-v~~~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~ 579 (737)
......+.++.+..+.. +.....+ ++.|.++| +.+ . .++|.+
T Consensus 313 ~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V------~------------i~~~~~-------------- 360 (458)
T 3hsi_A 313 FYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVV------R------------LWRDGD-------------- 360 (458)
T ss_dssp TCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEE------E------------EECBTT--------------
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEE------E------------EEECCC--------------
T ss_conf 76677633445302588988766666777899985798289------9------------980599--------------
Q ss_pred HCCCCCEEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 20342046665699992429997055877365589997302799723998786123589999999999
Q 004680 580 MHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 580 ~~~~~~iyvHSK~mIVDD~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
.++|+|+|||||++++|||+|+|.||+. .|+|+++.+++++.. ...++.+...++|.
T Consensus 361 ------~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~~~---l~~~l~~~f~~~~~ 417 (458)
T 3hsi_A 361 ------NTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQQQ---LLAQVEKEQNQIRQ 417 (458)
T ss_dssp ------BEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTTCS---SHHHHHHHHHHHHT
T ss_pred ------CCEEEEEEEECCEEEEECCCCCCCCHHH--HCCEEEEEEECCCHH---HHHHHHHHHHHHHH
T ss_conf ------8546779999873899538879800354--084358999578589---99999999999997
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=1.00 E-value=1 Score=202.16 Aligned_cols=282 Identities=13% Similarity=0.124 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHCCCC-----EEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 12489999999970254-----8999994138834796188122100019999999999988299499988079887100
Q 004680 160 PGKLWEDVYKAIEGAKH-----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPI 234 (737)
Q Consensus 160 ~~~~~~~i~~aI~~Ak~-----~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~ 234 (737)
|.+.|+.+.+.|.+|++ +|+|+.|.+. + +..+.++|..||++||+|+||+ |..+....
T Consensus 345 P~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~-------~---------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~ 407 (687)
T 1xdp_A 345 PYHTFEHVLELLRQASFDPSVLAIKINIYRVA-------K---------DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE 407 (687)
T ss_dssp TTBCTHHHHHHHHHHHHCTTEEEEEEEESSCC-------T---------TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-------C---------CHHHHHHHHHHHHCCCEEEEEE-CCCCCCCH
T ss_conf 25640157999998753876218999854632-------8---------6799999999986599899998-89764214
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEE---EEECCCCCCCCCCCC
Q ss_conf 01445545661888998722993999858898888864457310699628876854664248---997563378977679
Q 004680 235 IKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIM---SFVGGLDLCDGRYDT 311 (737)
Q Consensus 235 ~~~~g~~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~v---AfvGGidL~~~R~Dt 311 (737)
. .+....+.|..+||++.... ...+.|.|++|||++..+ -+ +|+||.|+....+
T Consensus 408 ~--------~n~~~~~~L~~aGV~V~~~~-------~~~k~H~Ki~VID~re~~------~i~~~a~iGS~N~d~rs~-- 464 (687)
T 1xdp_A 408 E--------ANIHWAKRLTEAGVHVIFSA-------PGLKIHAKLFLISRKENG------EVVRYAHIGTGNFNEKTA-- 464 (687)
T ss_dssp T--------TTTTTTHHHHHHTCEEEECC-------TTCEECCEEEEEEEEETT------EEEEEEEEESSCSCTTGG--
T ss_pred H--------HHHHHHHHHHHCCCEEEEEC-------CCCCCCCEEEEEEECCCC------EEEEEEEEECCCCCCCHH--
T ss_conf 6--------57999999997898999925-------886630269999821588------078999996886880525--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99754445788755576543334676568999999711011105087-89999999999962206999876788989889
Q 004680 312 EKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQRWTKQCDPSLLVPISSIPNLG 390 (737)
Q Consensus 312 ~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~ 390 (737)
..|+|+++.+.|+ ++.++...|...|........
T Consensus 465 ----------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~~----------- 499 (687)
T 1xdp_A 465 ----------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVTF----------- 499 (687)
T ss_dssp ----------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCCC-----------
T ss_pred ----------------------------------HHCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCH-----------
T ss_conf ----------------------------------24123799981889999999999999734544346-----------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC----EEEEEECCCCCCCCCCCCCC
Q ss_conf 99998998888889870259992168551000014852133899999999995213----69995122357853323344
Q 004680 391 HKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAER----FIYIENQYFIGGCQLWEKDK 466 (737)
Q Consensus 391 ~p~~~~p~~~~~~~~~~~vqi~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~Ak~----~IyIEnqYFi~~~~~w~~~~ 466 (737)
. +++.+ +. .....+...+...|..|++ +|+|.++|+ ++
T Consensus 500 --------------~----~l~~s-P~----------~~~~~l~~~I~~ei~~A~~g~~~~I~i~~~~l-pD-------- 541 (687)
T 1xdp_A 500 --------------D----YLMVS-PQ----------NSRRLLYEMVDREIANAQQGLPSGITLKLNNL-VD-------- 541 (687)
T ss_dssp --------------S----SCEEE-TT----------SHHHHHHHHHHHHHHHHHTTCCCCEEEEESCB-CC--------
T ss_pred --------------H----HEEEC-CC----------HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CC--------
T ss_conf --------------6----50648-82----------06678999999999998728998899993898-99--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 578777527999999999998189818999915999---99999995012556678869989999999999659988976
Q 004680 467 HCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWP---EGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPR 543 (737)
Q Consensus 467 ~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p---~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~ 543 (737)
..+..+|..|.++| |+|.|++...- .|.|.- +
T Consensus 542 ---------~~ii~AL~~Aa~rG--V~VrLivrg~c~l~pgvp~~---------------------------------s- 576 (687)
T 1xdp_A 542 ---------KGLVDRLYAASSSG--VPVNLLVRGMCSLIPNLEGI---------------------------------S- 576 (687)
T ss_dssp ---------HHHHHHHHHHHHTT--CCEEEEESSCBCBCTTCTTT---------------------------------S-
T ss_pred ---------HHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCC---------------------------------C-
T ss_conf ---------99999999999879--98999996631357899999---------------------------------8-
Q ss_pred CCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEE---ECEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 7258730420343205996359999999825677642034204666569999---2429997055877365589997302
Q 004680 544 DFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIV---DDVYLLIGSANINQRSMDGQRDTEI 620 (737)
Q Consensus 544 ~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvHSK~mIV---DD~~~iIGSANiN~RSm~g~~DsEi 620 (737)
+-+.+.. +.. + ..-|+|+..+ ||++++||||||+.|||..| .|+
T Consensus 577 dni~V~s------------~~~-----------------r--~Leh~rI~~f~~~dd~~~~IGSAN~d~Rsl~~n--~Ev 623 (687)
T 1xdp_A 577 DNIRAIS------------IVD-----------------R--YLEHDRVYIFENGGDKKVYLSSADWMTRNIDYR--IEV 623 (687)
T ss_dssp TTEEEEE------------ECS-----------------S--SEECCCEEEECGGGSCEEEEESCCBSHHHHHSE--EEE
T ss_pred CCEEEEE------------EHH-----------------H--HHHCCEEEEECCCCCCEEEEECCCCCHHHHHHH--EEE
T ss_conf 7779987------------056-----------------7--864773999928998789998574522225442--445
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 799723998786123589999999999
Q 004680 621 AIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 621 ~v~i~~~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
++.++|+.. .+++.+.-...|.
T Consensus 624 ~~~I~d~~~-----~~~l~~~f~~~l~ 645 (687)
T 1xdp_A 624 ATPLLDPRL-----KQRVLDIIDILFS 645 (687)
T ss_dssp EEECCSHHH-----HHHHHHHHHHHHT
T ss_pred EEEECCHHH-----HHHHHHHHHHHHC
T ss_conf 579659999-----9999999998513
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=1.00 E-value=1 Score=190.93 Aligned_cols=283 Identities=11% Similarity=0.119 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHCCCC-----EEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 12489999999970254-----8999994138834796188122100019999999999988299499988079887100
Q 004680 160 PGKLWEDVYKAIEGAKH-----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPI 234 (737)
Q Consensus 160 ~~~~~~~i~~aI~~Ak~-----~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~ 234 (737)
|.+.|+.+.++|.+|++ +|.++.|.+. + +..+.++|.+||++||+|++|+ | .++...
T Consensus 350 p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~-------~---------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfd 411 (705)
T 2o8r_A 350 PYYTYDYVVRLLMEAAISPDVSEIRLTQYRVA-------E---------NSSIISALEAAAQSGKKVSVFV-E-LKARFD 411 (705)
T ss_dssp TTBCSHHHHHHHHHHHTCTTEEEEEEEESCCC-------S---------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC-
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC-------C---------CHHHHHHHHHHHHCCCEEEEEE-E-CCCCCC
T ss_conf 36757799999998530888439999999970-------9---------7899999999998799999999-6-887856
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 014455456618889987229939998588988888644573106996288--768546642489975633789776799
Q 004680 235 IKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDAR--AQDSIFDREIMSFVGGLDLCDGRYDTE 312 (737)
Q Consensus 235 ~~~~g~~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~~~vAfvGGidL~~~R~Dt~ 312 (737)
. ..+..+.+.|+.+||+|.... ...++|+|++|||++ ..++ . +-.+++|.-|+.+.
T Consensus 412 e-------e~ni~wa~~Le~aGv~Vv~g~-------~~lk~H~Ki~lIdrr~~~~g~--~-~~y~~igtGN~n~~----- 469 (705)
T 2o8r_A 412 E-------ENNLRLSERMRRSGIRIVYSM-------PGLKVHAKTALILYHTPAGER--P-QGIALLSTGNFNET----- 469 (705)
T ss_dssp ----------CHHHHHHHHHHTCEEEECC-------TTCCBCCCEEEEEECCCSSSC--C-CEEEEEESSCSSCC-----
T ss_pred H-------HHHHHHHHHHHHCCCEEEECC-------CCCCCEEEEEEEECCCCCCCC--E-EEEEECCCCCEEEE-----
T ss_conf 3-------444999999997899999866-------887734479999461012786--2-37876361660034-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEC-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 975444578875557654333467656899999971101110508-7899999999999622069998767889898899
Q 004680 313 KHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITG-EAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGH 391 (737)
Q Consensus 313 ~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~ 391 (737)
. ..-|.|+++...+ +++.|+...|...|....
T Consensus 470 ------------------------------t-ariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~---------------- 502 (705)
T 2o8r_A 470 ------------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRILDGDPE---------------- 502 (705)
T ss_dssp ------------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHHHTTCCC----------------
T ss_pred ------------------------------E-EEEEEEEEEEECCHHHHHHHHHHHHHHHCCCC----------------
T ss_conf ------------------------------8-99994310353686999999999999838888----------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC----EEEEEECCCCCCCCCCCCCCC
Q ss_conf 9998998888889870259992168551000014852133899999999995213----699951223578533233445
Q 004680 392 KSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAER----FIYIENQYFIGGCQLWEKDKH 467 (737)
Q Consensus 392 p~~~~p~~~~~~~~~~~vqi~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~Ak~----~IyIEnqYFi~~~~~w~~~~~ 467 (737)
+ .. + .|++-+ +. .....+.+.+..+|.+|++ +|+|.++| +++
T Consensus 503 ~---------~~---~-~~l~~s----P~-------~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D--------- 548 (705)
T 2o8r_A 503 P---------AR---F-SRLLVA----RY-------NMGEAITNLIEREIENVKRGKRGYMLLKMNG-LQD--------- 548 (705)
T ss_dssp C---------SC---C-SSCEET----TT-------THHHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCC---------
T ss_pred C---------CC---C-EEEEEC----CC-------HHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCC---------
T ss_conf 7---------77---4-289989----90-------1889999999999999756899889998189-998---------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 7877752799999999999818981899991599----999999995012556678869989999999999659988976
Q 004680 468 CGCRNLIPIEIALKVVSKIKAKERFAVYILIPMW----PEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPR 543 (737)
Q Consensus 468 ~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~----p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~ 543 (737)
..+..+|..|.++| |+|.+++-.. | |.+ .+
T Consensus 549 --------~~ii~aL~~As~~G--V~V~LIVRGiC~L~P-gv~--~s--------------------------------- 582 (705)
T 2o8r_A 549 --------KNVITQLYRASEAG--VEIDLIVRGICCLVP-DMP--QS--------------------------------- 582 (705)
T ss_dssp --------HHHHHHHHHHHHTT--CEEEEEESSCBCSCC-SSG--GG---------------------------------
T ss_pred --------HHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCC--CC---------------------------------
T ss_conf --------99999999999879--969999726424688-987--78---------------------------------
Q ss_pred CCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEE---ECEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 7258730420343205996359999999825677642034204666569999---2429997055877365589997302
Q 004680 544 DFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIV---DDVYLLIGSANINQRSMDGQRDTEI 620 (737)
Q Consensus 544 ~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvHSK~mIV---DD~~~iIGSANiN~RSm~g~~DsEi 620 (737)
+-+.+. .+.. + ..=|+|++++ ||+++.||||||+.|||..| -|+
T Consensus 583 dni~V~------------Sivg-----------------r--~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~~r--~Ev 629 (705)
T 2o8r_A 583 RNIRVT------------RLVD-----------------M--YLEHSRIWCFHNGGKEEVFISSADWMKRNLYNR--IET 629 (705)
T ss_dssp TTEEEE------------ECCS-----------------S--SEECCCEEEECGGGSCEEEEESCCBCHHHHHTS--BCE
T ss_pred CCEEEE------------EEHH-----------------H--HHHCCEEEEEECCCCCEEEEECCCCCHHHHHHE--EEE
T ss_conf 876897------------6078-----------------8--975687999988998689995644333524312--678
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 799723998786123589999999999
Q 004680 621 AIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 621 ~v~i~~~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
++.++|++. .+.+.+.-..-|.
T Consensus 630 ~~~i~d~~~-----~~~l~~i~~~~l~ 651 (705)
T 2o8r_A 630 ACPVLDPTL-----RREIIDILEIQLR 651 (705)
T ss_dssp EEECCSHHH-----HHHHHHHHHHHHH
T ss_pred EEEECCHHH-----HHHHHHHHHHHHH
T ss_conf 789759899-----9999999998635
No 5
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=143.68 Aligned_cols=90 Identities=16% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCCCCCEEEEEECCEEEEECC---CCCCCEEEEEEEEECCCCCEEEEEEEECCC---CCCCEEEEEEHHHHHCCC----C
Q ss_conf 688994799998997876426---999980767999993799617999983588---843177996025451013----4
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNEA----S 77 (737)
Q Consensus 8 ~~~~DPYv~i~l~~~~v~rTk---~t~nP~WnE~F~i~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g----~ 77 (737)
.|++||||+|.+++++++||+ +|+||+|||+|.|.+.....|.|+|+|+|. |++||++.|||+++. .+ .
T Consensus 57 ~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~-~~~~~~~ 135 (157)
T 2fk9_A 57 HQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELL-RTTGASD 135 (157)
T ss_dssp CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHH-HHHTTCS
T ss_pred CCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHH-CCCCCCC
T ss_conf 888782999999999667865227999983375899991899999999998998888989989999989932-2457787
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 2241695525899889996079998314
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
..+.||+|. + .|+|+++++|.
T Consensus 136 ~~~~W~~L~-~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 136 TFEGWVDLE-P------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEEECB-S------SCEEEEEEEEC
T ss_pred CCCEEEECC-C------CCEEEEEEEEE
T ss_conf 633799899-9------93999999997
No 6
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=1.00 E-value=1 Score=138.15 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 24899999999702548999994138834796188122100019999999999988299499988079887100014455
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~~~g~ 240 (737)
++.|+.++++|.+|+++|+|+.|.|. ...|.++|.+|++|||+||||+ |..... . .
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~-----------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~-~-~---- 100 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFS-----------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMA-L-N---- 100 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBC-----------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHHHEEEEEEEEEEC-----------------CHHHHHHHHHHHHCCCCEEEEE-ECCCCC-C-C----
T ss_conf 79999999999974009999999837-----------------7799999999998698089998-332232-4-4----
Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45661888998722993999858898888864457310699628876854664248997563378977679997544457
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l~~~l 320 (737)
......|...||++..... ...+|+|++|||++ ++|+||.|++...+.
T Consensus 101 -----~~~~~~l~~~gi~v~~~~~-------~~~~H~K~~viD~~----------~~~~GS~N~t~~~~~---------- 148 (196)
T 4ggj_A 101 -----GSQIGLLRKAGIQVRHDQD-------LGYMHHKFAIVDKK----------VLITGSLNWTTQAIQ---------- 148 (196)
T ss_dssp -----CCHHHHHHHTTCEEEECCS-------SSCCCCEEEEETTT----------EEEEESCCBCHHHHH----------
T ss_pred -----HHHHHHHHHCCCCCCCCCC-------CCCCCCCEEEECCE----------EEEECCCCCCHHHHC----------
T ss_conf -----7789999866997202465-------55545747997125----------888648668844532----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEC-HHHHHHHHHHHHHHHHCCC
Q ss_conf 8875557654333467656899999971101110508-7899999999999622069
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHDVHACITG-EAAWDVLTNFEQRWTKQCD 376 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~G-paa~dl~~~F~~rW~~~~~ 376 (737)
..| +..+.+.. ++|..+...|.+.|+....
T Consensus 149 -------------------------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 -------------------------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp -------------------------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred -------------------------CCC-EEEEEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------------------462-4699997999999999999999986787
No 7
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.00 E-value=1 Score=127.87 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEEECC-----EEEEECC---CCCCCEEEEEEEEECCCCC-EEEEEEEECCC---CCCCEEEEEEHHHHHC
Q ss_conf 068899479999899-----7876426---9999807679999937996-17999983588---8431779960254510
Q 004680 7 FVNGKPTYVTIKIDN-----KKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~-----~~v~rTk---~t~nP~WnE~F~i~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..|++||||+|.++. ....||+ ++.||+|||+|.|.+.... .|.|+|+|+|. |++||++.|+|+++.
T Consensus 37 ~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~- 115 (153)
T 3b7y_A 37 ILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLP- 115 (153)
T ss_dssp ----CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCC-
T ss_pred CCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCC-
T ss_conf 8989781799999778886200046750659999899988999833988989999998999968970599999989924-
Q ss_pred CCCCC------CCEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf 13422------416955258998899960799983147
Q 004680 75 EASLI------SGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 75 ~g~~~------d~w~~L~~~~~k~~~~~~l~l~l~f~p 106 (737)
.+... +.|++|....++....|+|+++++|.|
T Consensus 116 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 116 TENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp BCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 47984200244010313445579974359999999959
No 8
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=127.54 Aligned_cols=92 Identities=11% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCCCCEEEEEECCEEEEECC---CCCCCEEEEEEEEECCCCCEEEEEEEECCC---CCCCEEEEEEHHHHHCCC-CCCCC
Q ss_conf 88994799998997876426---999980767999993799617999983588---843177996025451013-42241
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNEA-SLISG 81 (737)
Q Consensus 9 ~~~DPYv~i~l~~~~v~rTk---~t~nP~WnE~F~i~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g-~~~d~ 81 (737)
+++||||+|.+++.+++||+ +|+||+|||+|.|.+.....|.|+|+|+|. |++||++.|+++++...+ ...+.
T Consensus 36 ~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~ 115 (136)
T 1gmi_A 36 FLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115 (136)
T ss_dssp CCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEE
T ss_pred CCCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCCCCCCCE
T ss_conf 67695899998996700335787996974488899980689999999996998888988999999889921057987117
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 69552589988999607999831478
Q 004680 82 FFPLEMENGKPNPDLRLRFMLWFKPA 107 (737)
Q Consensus 82 w~~L~~~~~k~~~~~~l~l~l~f~p~ 107 (737)
|++|. + .|+|+++++|.+.
T Consensus 116 w~~L~-~------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 116 WIDLE-P------EGKVYVIIDLSGS 134 (136)
T ss_dssp EEECB-S------SCEEEEEEEEEEE
T ss_pred EEECC-C------CEEEEEEEEEEEC
T ss_conf 89859-9------8099999999916
No 9
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=126.66 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=85.4
Q ss_pred CCCCCCCEEEEEECCEEEEECC----CCCCCEEEEEEEEECCCCC-EEEEEEEECCC---CCCCEEEEEEHHHHHCCCCC
Q ss_conf 0688994799998997876426----9999807679999937996-17999983588---84317799602545101342
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~~~v~rTk----~t~nP~WnE~F~i~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
..|++||||+|.+++.+. ||+ ++.||+|||+|.|.+.+.. .|.|+|+|+|. |++||++.|+|+.+...+..
T Consensus 27 ~~g~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 105 (136)
T 1wfj_A 27 FLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105 (136)
T ss_dssp SSCSSCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEE
T ss_pred CCCCCCCEEEEEECCCCC-EEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCCCC
T ss_conf 577868269999999612-1072249998994176799997799988999999789888996389999987982457888
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 24169552589988999607999831478763
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWFKPAAYE 110 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f~p~~~~ 110 (737)
.+.|++|. .+++ ..|+|+++++|.|...+
T Consensus 106 ~~~w~~L~-~~~~--~~G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 106 PPTAYNVV-KDEE--YKGEIWVALSFKPSGPS 134 (136)
T ss_dssp EEEEEEEE-ETTE--EEEEEEEEEEEEECCSC
T ss_pred CCEEEEEE-CCCC--CCEEEEEEEEEEECCCC
T ss_conf 86789964-3985--58899999999868888
No 10
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=1.00 E-value=1 Score=126.62 Aligned_cols=134 Identities=15% Similarity=0.076 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 33899999999995213699951223578533233445787775279999999999981898189999159999999999
Q 004680 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSD 509 (737)
Q Consensus 430 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~~~~~ 509 (737)
..+....++++|++|+++|+|+..+| ++ .+++.+|.+|.+|| |+|+|++...... ..
T Consensus 44 ~~~~~~~ll~~I~~A~~sI~i~~y~~-~~-----------------~~i~~aL~~aa~rG--V~Vrii~D~~~~~--~~- 100 (196)
T 4ggj_A 44 SESSLSRLLRALLAARSSLELCLFAF-SS-----------------PQLGRAVQLLHQRG--VRVRVITDCDYMA--LN- 100 (196)
T ss_dssp SCCHHHHHHHHHHTCSSEEEEEESCB-CC-----------------HHHHHHHHHHHHTT--CEEEEEESSCCC------
T ss_pred CHHHHHHHHHHHHHHHEEEEEEEEEE-CC-----------------HHHHHHHHHHHHCC--CCEEEEEECCCCC--CC-
T ss_conf 37999999999997400999999983-77-----------------79999999999869--8089998332232--44-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
Q ss_conf 50125566788699899999999996599889767258730420343205996359999999825677642034204666
Q 004680 510 PVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVH 589 (737)
Q Consensus 510 ~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvH 589 (737)
.+.+..|.++|+++. + +.+ ..++|
T Consensus 101 -----------------~~~~~~l~~~gi~v~------~--------------~~~-------------------~~~~H 124 (196)
T 4ggj_A 101 -----------------GSQIGLLRKAGIQVR------H--------------DQD-------------------LGYMH 124 (196)
T ss_dssp -----------------CCHHHHHHHTTCEEE------E--------------CCS-------------------SSCCC
T ss_pred -----------------HHHHHHHHHCCCCCC------C--------------CCC-------------------CCCCC
T ss_conf -----------------778999986699720------2--------------465-------------------55545
Q ss_pred EEEEEEECEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 569999242999705587736558999730279972399878612358999999999996
Q 004680 590 SKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEH 649 (737)
Q Consensus 590 SK~mIVDD~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~eh 649 (737)
+|++|||++++++||+||+.+|+..| .|..+.+.++.. .........++|.+.
T Consensus 125 ~K~~viD~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~-----~~~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 125 HKFAIVDKKVLITGSLNWTTQAIQNN--RENVLIMEDTEY-----VRLFLEEFERIWEEF 177 (196)
T ss_dssp CEEEEETTTEEEEESCCBCHHHHHHC--CEEEEEECCHHH-----HHHHHHHHHHHHHHT
T ss_pred CCEEEECCEEEEECCCCCCHHHHCCC--CEEEEEEECHHH-----HHHHHHHHHHHHHHC
T ss_conf 74799712588864866884453246--246999979999-----999999999999867
Done!