Query 004681
Match_columns 737
No_of_seqs 771 out of 4248
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 18:08:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004681.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1980-1984//hhsearch_pdb/004681hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 369.0 41.1 282 382-710 104-410 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 352.7 48.2 366 319-714 49-570 (611)
3 1nr0_A Actin interacting prote 1.0 1 1 343.0 52.3 340 347-711 26-522 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 328.4 42.5 359 342-718 618-1165(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 327.8 49.8 326 345-708 227-577 (577)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 319.8 45.9 357 345-717 663-1213(1249)
7 4g56_B MGC81050 protein; prote 1.0 1 1 313.2 37.1 316 347-715 13-347 (357)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 312.3 49.3 334 343-715 184-542 (577)
9 1got_B GT-beta; complex (GTP-b 1.0 1 1 310.9 44.9 282 382-708 51-340 (340)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 310.9 46.7 350 343-713 62-666 (902)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=369.03 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=231.2
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEE
Q ss_conf 48999999738999925999999997899099954168865554431011248851698806630137899998699998
Q 004681 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~ 461 (737)
+.+ |.++|++++|+|++.++++|+.|++|++|++.++.. ...+. +|...|.+++|
T Consensus 104 l~g--h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------~~~l~--~h~~~V~~v~~ 158 (410)
T 1vyh_C 104 LSG--HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------ERTLK--GHTDSVQDISF 158 (410)
T ss_dssp EEC--CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------CEEEC--CCSSCEEEEEE
T ss_pred ECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---------------------EEEEE--CCCCCEEEEEE
T ss_conf 616--677689999969999899993898599998999937---------------------78881--66786878998
Q ss_pred E--CCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 0--99999984-8909999879971789961899986899995999-599998899099995699927999737786568
Q 004681 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 462 s--~~~l~s~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~v~ 537 (737)
+ ++++++|+ |++|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|+.|++||++++.++..+.+|...+.
T Consensus 159 ~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 59999999991898199995899826699828999778999967999999996899699998999948999927886289
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCCEEECEEEEECCCCCCCCCCCEEEEEEECC--------------------CC
Q ss_conf 9999089999999958994999957998024102101001488778877389999069--------------------97
Q 004681 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QI 597 (737)
Q Consensus 538 ~i~~sp~~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--------------------g~ 597 (737)
++.++|++.++++++.|+.|++||+.++. ... ...+|. ..|.+++|+|+ +.
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCC-----EEE-EECCCC---CEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 99998999999999189909999898974-----366-733787---458999985865543101212555556678888
Q ss_pred EEEE-EECCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf 9999-916819999689994457842899998958999905998999994699099998599806789711211478875
Q 004681 598 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 598 ~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
++++ +.|+.|++||++++.++..+.+ |...|++++|+|+++++++|+.|+.|++||+.+++....+..|
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-------- 379 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-------- 379 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--------
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC--------
T ss_conf 999993898499998899966999977--8885899999499899999959792999989999068998477--------
Q ss_pred CCCEEEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 5751018999925999899999799929999458
Q 004681 677 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 677 ~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
...+. +++|+| ++.+|++|+.||.|++|++.
T Consensus 380 ~~~v~--~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 EHFVT--SLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEE--EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred CCCEE--EEEECC-CCCEEEEEECCCCEEEEECC
T ss_conf 78689--999828-99999999279948997379
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=352.72 Aligned_cols=366 Identities=13% Similarity=0.106 Sum_probs=274.7
Q ss_pred CCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 95101114999986402407998622212899988999955990999416765799750255248999999738999925
Q 004681 319 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 398 (737)
Q Consensus 319 ~~~l~~~~~~~~~~s~~~~~~~~~~~~~~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp 398 (737)
+....++.+|... .....|+|||+++|+++.|++|++|++... .......+.+ |.+.|.+++|+|
T Consensus 49 ~~~~~~~~~h~~~----------v~~~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~fs~ 113 (611)
T 1nr0_A 49 LTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISWDS 113 (611)
T ss_dssp SSCCEEECCCSSC----------EEEEEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEECT
T ss_pred CCCCEEECCCCCC----------EEEEEECCCCCEEEEEECCCCEEEEECCCC---CCEEEEEECC--CCCCEEEEEECC
T ss_conf 2427376589986----------599999999968999948997899489898---4156676225--578448999899
Q ss_pred CCCEEEEEECC----CCEEEEECCCCCC---------------CCCCC-CEE----EEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 99999999789----9099954168865---------------55443-101----124885169880663013789999
Q 004681 399 SGDFLVALTQT----ATHKLWKWQSNKQ---------------SLEEE-NVN----MESQLYQPSSKLVMTNDIAADPKD 454 (737)
Q Consensus 399 dg~~L~s~s~d----g~i~iWd~~~~~~---------------~~g~~-~~~----~~~~i~~~~~~~~~~~~~~~~h~~ 454 (737)
+|++|++++.+ +.|++|+...... +++.. .++ ..+++|+..++.+...+. +|..
T Consensus 114 dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~ 191 (611)
T 1nr0_A 114 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTK 191 (611)
T ss_dssp TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSS
T ss_pred CCCEEEEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEEC--CCCC
T ss_conf 99979999899773669999638997632547889836999889998299999289809999799975766520--0257
Q ss_pred CEEEEEEE--CCEEEEEE-CCEEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCC
Q ss_conf 86999980--99999984-8909999879971789961-------899986899995999-5999988990999956999
Q 004681 455 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 455 ~V~~i~~s--~~~l~s~~-dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~ 523 (737)
.|.+++|+ ++++++++ |++|++||+.+++....+. +|...|.+++|+|++ .+++++.|+.|++||+.++
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 16999997999989999899919998899982866513664323566787899999799999999908980999968887
Q ss_pred CEEE-------------------------------------------EECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 2799-------------------------------------------973778656899990899999999589949999
Q 004681 524 KTKA-------------------------------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 560 (737)
Q Consensus 524 ~~~~-------------------------------------------~l~~~~~~v~~i~~sp~~~~l~s~s~dg~I~iw 560 (737)
+++. .+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 01344047887664068999738879999589968999688997446983788888999991899989999589849999
Q ss_pred ECCCCCEEECEE--------------------------EEE--------------------------C-CC---------
Q ss_conf 579980241021--------------------------010--------------------------0-14---------
Q 004681 561 DAVGWKKLCSKF--------------------------LHS--------------------------F-QT--------- 578 (737)
Q Consensus 561 dl~~~~~~~~~~--------------------------~~~--------------------------~-~~--------- 578 (737)
|+.++....... ++. + +.
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEC
T ss_conf 78879256321667765078999878996999984896689546885435652120014899707998079969999967
Q ss_pred --------------CCCCCCCCEEEEEEECCCCEEEE-EECCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEE
Q ss_conf --------------88778877389999069979999-916819999689994457842899998958999905998999
Q 004681 579 --------------GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 579 --------------~~~~~~~~v~~i~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i~~spdg~~l~ 643 (737)
.|. ..+.+++|+|+|+++++ +.|+.|++||+..+....... ..|...|++++|+|++++|+
T Consensus 432 ~~v~~~~~~~~~~~~~~---~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp SEEEEEETTEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred CEEEEEECCCEEEEECC---CCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEE
T ss_conf 63999848943464068---895499992899899996899739999945992224101-57788607999989999899
Q ss_pred EEECCCEEEEEECCC-CEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 994699099998599-80678971121147887557510189999259998999997999299994589942
Q 004681 644 VSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 644 sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
+++.|+.|++|++.+ ++...... ..+| ...++ +++|+| |+.+||+++.|++|++|++..++.
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~-----~~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNS-----WTFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCC-----CCCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTTS
T ss_pred EECCCCCEEEEECCCCCCEEEEEE-----EEEC-CCCEE--EEEECC-CCCEEEEEECCCCEEEEECCCCCC
T ss_conf 994899899988577872232102-----6404-66425--899899-899799997997299997887555
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=343.01 Aligned_cols=340 Identities=14% Similarity=0.151 Sum_probs=181.6
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC----
Q ss_conf 2899988999955990999416765799750255248999999738999925999999997899099954168865----
Q 004681 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---- 422 (737)
Q Consensus 347 ~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~---- 422 (737)
|+|||+.+++++ ++.+++|++.. +..... +.+ |.+.|.+++|||+|++|++|+.|++|++||+.....
T Consensus 26 ~spdg~~l~~~~-~~~v~l~~~~~----~~~~~~-~~~--h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 26 NTPAGDKIQYCN-GTSVYTVPVGS----LTDTEI-YTE--HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp ECTTSSEEEEEE-TTEEEEEETTC----SSCCEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred ECCCCCEEEECC-CCEEEEECCCC----CCCCEE-ECC--CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE
T ss_conf 679999799679-99799945787----242737-658--9986599999999968999948997899489898415667
Q ss_pred ---------------CCCCCCEE--------EEEEEEECCCCEEEEECCCCCCCCCEEEEEEE--CC-EEEEEE-CCEEE
Q ss_conf ---------------55443101--------12488516988066301378999986999980--99-999984-89099
Q 004681 423 ---------------SLEEENVN--------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKIS 475 (737)
Q Consensus 423 ---------------~~g~~~~~--------~~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~-~l~s~~-dg~i~ 475 (737)
++|...+. ..+.+|+ .+.....+. +|...|.+++|+ +. .+++++ |++|+
T Consensus 98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~--gh~~~v~~v~f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT--GQARAMNSVDFKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC--CCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEEC--CCCCCCEEEEECCCCCEEEEEEECCCEEE
T ss_conf 62255784489998999997999989977366999963--899763254--78898369998899982999992898099
Q ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEECCCCE
Q ss_conf 99879971789961899986899995999-59999889909999569992799973-------77865689999089999
Q 004681 476 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNV 547 (737)
Q Consensus 476 iwd~~~~~~~~~~~~~~~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~-------~~~~~v~~i~~sp~~~~ 547 (737)
+||..+++....+.+|...|.+++|+|++ ++++++.|+.|++||+.+++....+. +|...|.+++|+|++++
T Consensus 174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 99799975766520025716999997999989999899919998899982866513664323566787899999799999
Q ss_pred EEEEECCCCEEEEECCCCCEEECEEE-------------------------------------EECCCCCCCCCCCEEEE
Q ss_conf 99995899499995799802410210-------------------------------------10014887788773899
Q 004681 548 LVSSGADAQLCVWDAVGWKKLCSKFL-------------------------------------HSFQTGLVPETTIVNHI 590 (737)
Q Consensus 548 l~s~s~dg~I~iwdl~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~i 590 (737)
+++++.|++|++||+.++........ .....+|. ..|.++
T Consensus 254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~---~~v~~l 330 (611)
T 1nr0_A 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN---KAITAL 330 (611)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS---SCEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCC---CCEEEE
T ss_conf 99990898099996888701344047887664068999738879999589968999688997446983788---888999
Q ss_pred EEECCCCEEEE-EECCCEEEEECCCCCEEEEECC----------------------------------------------
Q ss_conf 99069979999-9168199996899944578428----------------------------------------------
Q 004681 591 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP---------------------------------------------- 623 (737)
Q Consensus 591 ~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~---------------------------------------------- 623 (737)
+|+|+++++++ +.|+.|++||+.++.....+..
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred EEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEC
T ss_conf 99189998999958984999978879256321667765078999878996999984896689546885435652120014
Q ss_pred -----------C-----------------------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCC
Q ss_conf -----------9-----------------------999895899990599899999469909999859980678971121
Q 004681 624 -----------D-----------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 669 (737)
Q Consensus 624 -----------~-----------------------~h~~~i~~i~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 669 (737)
. .|...+.+++|+|+++++++|+.|+.|++|++.++....... .
T Consensus 411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~- 488 (611)
T 1nr0_A 411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I- 488 (611)
T ss_dssp SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E-
T ss_pred CCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-C-
T ss_conf 89970799807996999996763999848943464068895499992899899996899739999945992224101-5-
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 147887557510189999259998999997999299994589
Q 004681 670 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 670 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+| ...+. +++|+| |+.+|++++.|+.|++|++.+
T Consensus 489 ----~h-~~~v~--~v~fsp-dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 489 ----VH-PAEIT--SVAFSN-NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp ----EC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred ----CC-CCCEE--EEEECC-CCCEEEEECCCCCEEEEECCC
T ss_conf ----77-88607--999989-999899994899899988577
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=328.40 Aligned_cols=359 Identities=13% Similarity=0.134 Sum_probs=241.9
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 62221289998899995599099941676579975025524899999973899992599999999789909995416886
Q 004681 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
.....|+|||+++++++.|++|++|+..+ +.+... +.+ |.+.|.+++|+|+|+++++++.|++|++|++.++.
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~-~~~--h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAET----GEKLLD-IKA--HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCC----CCEEEE-ECC--CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
T ss_conf 89999879999899994889499999899----978887-606--77778999992699989998189959998779993
Q ss_pred C-----------------CC--CCCCEE----EEEEEEECCCCEEEEECCCCCCCCCEEEEEEE--CCEEEEEE-CCEEE
Q ss_conf 5-----------------55--443101----12488516988066301378999986999980--99999984-89099
Q 004681 422 Q-----------------SL--EEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 475 (737)
Q Consensus 422 ~-----------------~~--g~~~~~----~~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~~l~s~~-dg~i~ 475 (737)
. +. +..... ..+++|+..++.+..... +|...|.+++|+ ++++++++ ||.|+
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEEC--CCCCCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 68999589973799998408996599998089709999899963422012--7779788999925999899997898599
Q ss_pred EEECCCCCEEEEE-------------------------------------------------------CCCCCCEEEEEE
Q ss_conf 9987997178996-------------------------------------------------------189998689999
Q 004681 476 IFSLETFQTLATF-------------------------------------------------------ANPPPIATYFIL 500 (737)
Q Consensus 476 iwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~i~~ 500 (737)
+||+.++.....+ .+|...+.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEE
T ss_conf 99688886553020232102467764456501799999789988999758959999956897235774787776079998
Q ss_pred CCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECE----E---
Q ss_conf 5999-5999988990999956999279997377865689999089999999958994999957998024102----1---
Q 004681 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK----F--- 572 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~v~~i~~sp~~~~l~s~s~dg~I~iwdl~~~~~~~~~----~--- 572 (737)
+|++ .+++++.|+.|++|++.++..+..+.+|...|.+++|+|+++.+++++.|+.|++||+......... .
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEE
T ss_conf 27888899994798699998678956532278766568999989999899995897289887466520102113310368
Q ss_pred -----------------EE-------ECCCCCCCCCCCEEEEEEECCCCEEEEE-ECCCEEEEECCCCCEEEEECCCCCC
Q ss_conf -----------------01-------0014887788773899990699799999-1681999968999445784289999
Q 004681 573 -----------------LH-------SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 573 -----------------~~-------~~~~~~~~~~~~v~~i~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
+. ....... ..+.+++++|++.+++++ .+|.|++|++.++.....+.+ |.
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~--h~ 1003 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE---AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG--HK 1003 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECC---SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC--CS
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCEEEECCC---CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCC--CC
T ss_conf 975998689981377624898447650897256---7278999958997799986999889997578723443036--77
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECC----------------------------------------CCEEEEEEEC
Q ss_conf 895899990599899999469909999859----------------------------------------9806789711
Q 004681 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTS----------------------------------------TLELRCQINL 667 (737)
Q Consensus 628 ~~i~~i~~spdg~~l~sgs~dg~I~iwd~~----------------------------------------~~~~~~~~~~ 667 (737)
..|++++|+|+++++++++.||.|++|++. +++....+..
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred CCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECC
T ss_conf 71689999899998999869987999987999668985278738999990899589997889689988898865588746
Q ss_pred CCCC-----------------------------------CCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 2114-----------------------------------78875575101899992599989999979992999945899
Q 004681 668 TAYA-----------------------------------QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 668 ~~~~-----------------------------------~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
|... ..+| ... +.+++|+| ++.++++++.||.|++|++.++
T Consensus 1084 ~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-~~~--v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGC--VRCSAFSL-DGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC-SSC--EEEEEECS-SSSEEEEEETTSCCCEEESSSS
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCC-CCC--EEEEEECC-CCCEEEEEECCCEEEEEECCCC
T ss_conf 6884899999899998999849994899878985001255068-776--79999979-9998999828997999988999
Q ss_pred CEEEEE
Q ss_conf 421110
Q 004681 713 EVEWGK 718 (737)
Q Consensus 713 ~~~w~~ 718 (737)
+.....
T Consensus 1160 ~~~~~~ 1165 (1249)
T 3sfz_A 1160 QLLHSC 1165 (1249)
T ss_dssp CCCCCC
T ss_pred CEEEEE
T ss_conf 457885
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=327.76 Aligned_cols=326 Identities=17% Similarity=0.232 Sum_probs=199.7
Q ss_pred CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC--
Q ss_conf 212899988999955990999416765799750255248999999738999925999999997899099954168865--
Q 004681 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 422 (737)
Q Consensus 345 ~~~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~-- 422 (737)
..++|||+.+++++.|+.+++|+.. +.+... +.+ |...|.+++|+|+++.+++++.|+++++|+......
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~~-~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~ 298 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNRN-----GQLLQT-LTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT 298 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-----SCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEECCCEEEEEECC-----CCEEEE-EEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE
T ss_conf 9997999999999189989999599-----979999-806--88987999996899999999599979999489958999
Q ss_pred --------------CCCCCCEEE----EEEEEECCCCEEEEECCCCCCCCCEEEEEEE--CCEEEEEE-CCEEEEEECCC
Q ss_conf --------------554431011----2488516988066301378999986999980--99999984-89099998799
Q 004681 423 --------------SLEEENVNM----ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 481 (737)
Q Consensus 423 --------------~~g~~~~~~----~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~~l~s~~-dg~i~iwd~~~ 481 (737)
+++...... .+++|+.....+... . +|...+.+++|+ ++++++++ |+.+++|+. +
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~ 374 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 374 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-T
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE-E--CCCCCEEEEEECCCCCEEEEEECCCEEEEECC-C
T ss_conf 706889769999999999999996999599996999725787-4--78897799999899999999969998999908-9
Q ss_pred CCEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 71789961899986899995999-59999889909999569992799973778656899990899999999589949999
Q 004681 482 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 560 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~v~~i~~sp~~~~l~s~s~dg~I~iw 560 (737)
++.+..+.+|...|.+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w 453 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 9789985278897489999899999999949998999969-997898962889975799998999999999399989999
Q ss_pred ECCCCCEEECEEEEECCCCCCCCCCCEEEEEEECCCCEEEE-EECCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 57998024102101001488778877389999069979999-91681999968999445784289999895899990599
Q 004681 561 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 561 dl~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i~~spdg 639 (737)
|... ..+. ...+|. ..|.+++|+|+++++++ +.|+.|++||. +++++..+.+ |...|++++|+|++
T Consensus 454 ~~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 454 NRNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDG 520 (577)
T ss_dssp ETTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTS
T ss_pred ECCC------CEEE-EECCCC---CCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEEC--CCCCEEEEEECCCC
T ss_conf 7999------8899-972789---97789999699999999919897999939-9978999867--99998999991899
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 899999469909999859980678971121147887557510189999259998999997999299994
Q 004681 640 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 640 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd 708 (737)
++|++++.|+.|++||. +++.+..+..| ...+. +++|+| |+++|++++.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h--------~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGH--------SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECC--------SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEEC-CCCEEEEECCC--------CCCEE--EEEECC-CCCEEEEEECCCEEEEEC
T ss_conf 99999989699999969-99789897188--------88878--999968-999999990899999969
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=319.83 Aligned_cols=357 Identities=12% Similarity=0.123 Sum_probs=228.6
Q ss_pred CCCCCCCCEEEEEECCCEEEEEECCCCCC----------------------------------------CCCEEEEECCC
Q ss_conf 21289998899995599099941676579----------------------------------------97502552489
Q 004681 345 STSLPDADSAVCAKSLEKSVNLKLQLINE----------------------------------------PSECRTLLLPD 384 (737)
Q Consensus 345 ~~~spdg~~la~~s~d~~v~iW~~~~~~~----------------------------------------~~~~~~~~l~~ 384 (737)
..|+|+|+++++++.|+.|++|++.++.. .+.+... +.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT-MFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE-ECC
T ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHE-ECC
T ss_conf 9992699989998189959998779993689995899737999984089965999980897099998999634220-127
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC------------------------------CCCCCCE---EE
Q ss_conf 99999738999925999999997899099954168865------------------------------5544310---11
Q 004681 385 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ------------------------------SLEEENV---NM 431 (737)
Q Consensus 385 ~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~------------------------------~~g~~~~---~~ 431 (737)
|.+.|.+++|+|+++++++++.||+|++|++..... ++|.... ..
T Consensus 742 --h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 742 --HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp --CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred --CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf --779788999925999899997898599996888865530202321024677644565017999997899889997589
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCEEEEEEE--CCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-EEE
Q ss_conf 2488516988066301378999986999980--99999984-8909999879971789961899986899995999-599
Q 004681 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 507 (737)
Q Consensus 432 ~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~~l~s~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~-~l~ 507 (737)
.+.+|+..++........ +|...|.+++|+ +.++++++ +|.|++|++.++.....+.+|...|.+++|+|++ .++
T Consensus 820 ~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEECCCCCEEEECC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEE
T ss_conf 599999568972357747-8777607999827888899994798699998678956532278766568999989999899
Q ss_pred EEECCCEEEEEE--------------------------------------------------------------------
Q ss_conf 998899099995--------------------------------------------------------------------
Q 004681 508 FGFDDSSILVHC-------------------------------------------------------------------- 519 (737)
Q Consensus 508 sgs~dg~I~iwd-------------------------------------------------------------------- 519 (737)
+++.|+.|++|+
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 99589728988746652010211331036897599868998137762489844765089725672789999589977999
Q ss_pred -----------CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECE-----------------
Q ss_conf -----------6999279997377865689999089999999958994999957998024102-----------------
Q 004681 520 -----------PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK----------------- 571 (737)
Q Consensus 520 -----------~~~~~~~~~l~~~~~~v~~i~~sp~~~~l~s~s~dg~I~iwdl~~~~~~~~~----------------- 571 (737)
+.++.....+.+|...|.+++|+|+++++++++.||.|++||+.++......
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l 1058 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL 1058 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEE
T ss_pred ECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 86999889997578723443036777168999989999899986998799998799966898527873899999089958
Q ss_pred ------------------EEEECCCCCCCCCCCEEEEEEECCCCEEEEE-ECCCEEEEECCCCCEEEEECCCCCCCCEEE
Q ss_conf ------------------1010014887788773899990699799999-168199996899944578428999989589
Q 004681 572 ------------------FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 572 ------------------~~~~~~~~~~~~~~~v~~i~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~ 632 (737)
... ...+|. ..|.+++|+|++++++++ .|+.|++||+.++.++..+.+ |...|++
T Consensus 1059 ~~~~~dg~v~vwd~~~~~~~~-~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~--h~~~v~~ 1132 (1249)
T 3sfz_A 1059 LSWSFDGTVKVWNVITGRIER-DFTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG--HNGCVRC 1132 (1249)
T ss_dssp EEEESSSEEEEEETTTTCCCE-EEECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC--CSSCEEE
T ss_pred EEEECCCCEEEEECCCCCEEE-EECCCC---CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECC--CCCCEEE
T ss_conf 999788968998889886558-874668---8489999989999899984999489987898500125506--8776799
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC--CCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 999059989999946990999985998067897112114--788755751018999925999899999799929999458
Q 004681 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 633 i~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
++|+|+++++++++.||.|++|++.+++....+...... ..+| ...+. +++|+| |+.++++++ |.|++|++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVA 1206 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSS
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCC-CCEEE--EEEECC-CCCEEEECC--CEEEEEECC
T ss_conf 999799998999828997999988999457885144444210256-74289--999978-999899779--859998988
Q ss_pred CCCEEEE
Q ss_conf 9942111
Q 004681 711 ESEVEWG 717 (737)
Q Consensus 711 ~~~~~w~ 717 (737)
+++....
T Consensus 1207 ~g~~~~~ 1213 (1249)
T 3sfz_A 1207 TGDSSQT 1213 (1249)
T ss_dssp SCBCCCC
T ss_pred CCCEEEE
T ss_conf 8950046
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=313.17 Aligned_cols=316 Identities=14% Similarity=0.119 Sum_probs=246.0
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECC------CCEEEEECCCC
Q ss_conf 289998899995599099941676579975025524899999973899992599999999789------90999541688
Q 004681 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT------ATHKLWKWQSN 420 (737)
Q Consensus 347 ~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d------g~i~iWd~~~~ 420 (737)
..+++.+ +.++.+.....|++.. .. ... |...|.+++|||||++|++++.| +++++|+..
T Consensus 13 ~g~~~~~-~~~~g~~~~~~w~~p~----~~-----p~~--H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-- 78 (357)
T 4g56_B 13 LGTENLY-FQSNGSSKGSAWGRPV----TA-----PAC--MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-- 78 (357)
T ss_dssp -------------------------------------C--CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC--
T ss_pred CCCCCEE-EECCCCCCCCCCCCCC----CC-----CCC--CCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECC--
T ss_conf 8866527-9258876555268999----97-----442--10788999998999999998289871326869997899--
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEEECCC--CCCCCCEEEEEEE-CCEEEEEE-CCEEEEEECCCCCEEE----EECCCC
Q ss_conf 65554431011248851698806630137--8999986999980-99999984-8909999879971789----961899
Q 004681 421 KQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPP 492 (737)
Q Consensus 421 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~--~~h~~~V~~i~~s-~~~l~s~~-dg~i~iwd~~~~~~~~----~~~~~~ 492 (737)
++........ .+|...|.+++|+ ...+++++ ||+|++||+.+++... ...+|.
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 79 -------------------EGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp -------------------C---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred -------------------CCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf -------------------9871405850247887987999996899899998999899934456640478742137888
Q ss_pred CCEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCEEEC
Q ss_conf 986899995999-599998899099995699927999737786568999908999-999995899499995799802410
Q 004681 493 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 493 ~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~v~~i~~sp~~~-~l~s~s~dg~I~iwdl~~~~~~~~ 570 (737)
..|.+++|+|++ ++++|+.|+.|++||+.+++.+..+.+|...|.+++|++++. .+++++.|+.|++||++++.....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCEEEE
T ss_conf 98899999799899999969893999989999599998277897889998368872266550578638878899964012
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCC-CEEEEE-ECCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCC-CEEEEEEC
Q ss_conf 21010014887788773899990699-799999-1681999968999445784289999895899990599-89999946
Q 004681 571 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCK 647 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~i~~sp~g-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i~~spdg-~~l~sgs~ 647 (737)
.. ...+. ..+.+++|+|++ .+++++ .|+.|++||+++++++..+.. |...|++++|+|++ ++|++|+.
T Consensus 220 ~~----~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 220 ID----FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp CC----CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEET
T ss_pred EE----ECCCC---CCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEEEC--CCEEEEEEEECCCCCCEEEEEEC
T ss_conf 33----00233---44421111213530599821354206898999958289935--53138779976899989999958
Q ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 99099998599806789711211478875575101899992599989999979992999945899421
Q 004681 648 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 648 dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
|++|+|||+.+++....+ +| ...++ +++|+|.|+.+|++++.||.|++|++.+....
T Consensus 291 D~~i~iwd~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp TSCEEEECTTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCEEEEEECCCCCEEEEC--------CC-CCCEE--EEEEECCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 997999989999586978--------89-99889--99995899999999918995999977999843
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=312.25 Aligned_cols=334 Identities=17% Similarity=0.215 Sum_probs=273.8
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 22212899988999955990999416765799750255248999999738999925999999997899099954168865
Q 004681 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
....++|+|+.+++++.|+.+++|+.. +..... +.+ |...|.+++|+|++.+|++++.|+.+++|+......
T Consensus 184 ~~~~~~~~~~~l~~~~~d~~v~~w~~~-----~~~~~~-~~~--~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~ 255 (577)
T 2ymu_A 184 WGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQT-LTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 255 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEE-EEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECC-----CCEEEE-EEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
T ss_conf 665416997789998599989999499-----968999-946--889889999979999999991899899995999799
Q ss_pred ----------------CCCCCCEEE----EEEEEECCCCEEEEECCCCCCCCCEEEEEEE--CCEEEEEE-CCEEEEEEC
Q ss_conf ----------------554431011----2488516988066301378999986999980--99999984-890999987
Q 004681 423 ----------------SLEEENVNM----ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 479 (737)
Q Consensus 423 ----------------~~g~~~~~~----~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~~l~s~~-dg~i~iwd~ 479 (737)
+++...... .+++|+... ....... +|...|.+++|+ ++.+++++ |+.|++||.
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 99806889879999968999999995999799994899-5899970--68897699999999999999969995999969
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 9971789961899986899995999-599998899099995699927999737786568999908999999995899499
Q 004681 480 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 558 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~v~~i~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~v~~i~~sp~~~~l~s~s~dg~I~ 558 (737)
. +..+..+.+|...+.+++|+|++ .+++++.|+.|++|+. +++.+..+.+|...|.+++|+|+++++++++.|+.|+
T Consensus 333 ~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 333 N-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp T-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred C-CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 9-9725787478897799999899999999969998999908-9978998527889748999989999999994999899
Q ss_pred EEECCCCCEEECEEEEECCCCCCCCCCCEEEEEEECCCCEEEE-EECCCEEEEECCCCCEEEEECCCCCCCCEEEEEECC
Q ss_conf 9957998024102101001488778877389999069979999-916819999689994457842899998958999905
Q 004681 559 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 559 iwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~i~~i~~sp 637 (737)
+||... ..+. ...+|. ..|.+++|+|+++++++ +.|+.|++||. +++.+..+.+ |...|.+++|+|
T Consensus 411 ~~~~~~------~~~~-~~~~~~---~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~~sp 477 (577)
T 2ymu_A 411 LWNRNG------QLLQ-TLTGHS---SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSP 477 (577)
T ss_dssp EECTTC------CEEE-EEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred EEECCC------CEEE-EECCCC---CCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECC--CCCCEEEEEECC
T ss_conf 996999------7898-962889---97579999899999999939998999979-9988999727--899778999969
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 998999994699099998599806789711211478875575101899992599989999979992999945899421
Q 004681 638 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 638 dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
++++|++++.|+.|++|+. +++....+..| ...+. +++|+| |+.+|++++.||.|++||.. ++..
T Consensus 478 d~~~las~~~d~~i~iw~~-~~~~~~~~~~h--------~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~~-~~~~ 542 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNR-NGQLLQTLTGH--------SSSVR--GVAFSP-DGQTIASASDDKTVKLWNRN-GQLL 542 (577)
T ss_dssp TSCEEEEEETTSEEEEEET-TSCEEEEEECC--------SSCEE--EEEECT-TSSCEEEEETTSEEEEECTT-SCEE
T ss_pred CCCEEEEEECCCEEEEECC-CCCEEEEEECC--------CCCEE--EEEECC-CCCEEEEEECCCEEEEEECC-CCEE
T ss_conf 9999999919897999939-99789998679--------99989--999918-99999999896999999699-9789
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=310.92 Aligned_cols=282 Identities=13% Similarity=0.171 Sum_probs=173.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEE
Q ss_conf 48999999738999925999999997899099954168865554431011248851698806630137899998699998
Q 004681 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~h~~~V~~i~~ 461 (737)
+.+ |.+.|++++|+|++++|++++.|++|++|+..+... ..... .|...|.+++|
T Consensus 51 l~g--H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------~~~~~--~~~~~v~~~~~ 105 (340)
T 1got_B 51 LRG--HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------VHAIP--LRSSWVMTCAY 105 (340)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEEE--CSSSCEEEEEE
T ss_pred ECC--CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC---------------------CEEEE--CCCCCEEEEEE
T ss_conf 048--778368999889999999981889689998999874---------------------33760--38861889999
Q ss_pred E--CCEEEEEE-CCEEEEEECCCC----CEEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 0--99999984-890999987997----1789961899986899995999599998899099995699927999737786
Q 004681 462 R--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 462 s--~~~l~s~~-dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 534 (737)
+ ++++++++ |+.+++|++.++ .....+.+|...+.++.|++++.+++++.|+.|++||+.+++.+..+.+|..
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCC
T ss_conf 99999999980898199997966888613677844877638999987999699998999299998999918899769998
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECEEEEECCCCCCCCCCCEEEEEEECCCCEEEE-EECCCEEEEECC
Q ss_conf 5689999089999999958994999957998024102101001488778877389999069979999-916819999689
Q 004681 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 613 (737)
Q Consensus 535 ~v~~i~~sp~~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~g~~l~~-~~dg~I~iwd~~ 613 (737)
.|.+++|+|+++++++++.|+.|++||++++. ... ...+|. ..|.+++|+|++.++++ +.|+.|++||++
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCE-----EEE-EECCCC---CCEEEEEECCCCCEEEEECCCCCEEEEECC
T ss_conf 66899998999999999389939997789981-----678-974876---877999994999989997489819999889
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 99445784289999895899990599899999469909999859980678971121147887557510189999259998
Q 004681 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~i~~i~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
++..+..+....+...|.+++|+|+++++++|+.|+.|++||+.+++....+..| ...+. +++|+| ++.
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--------~~~v~--~~~~s~-dg~ 325 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--------DNRVS--CLGVTD-DGM 325 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE--EEEECT-TSS
T ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECC--------CCCEE--EEEECC-CCC
T ss_conf 9918999726885241699999899999999779990999884138386585057--------78488--999829-999
Q ss_pred EEEEEECCCCEEEEE
Q ss_conf 999997999299994
Q 004681 694 RIALGLTNGRVHVIE 708 (737)
Q Consensus 694 ~las~s~Dg~V~iWd 708 (737)
+|++|+.||.|++|+
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEECC
T ss_conf 899972886189559
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=310.87 Aligned_cols=350 Identities=10% Similarity=0.053 Sum_probs=196.1
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 22212899988999955990999416765799750255248999999738999925999999997899099954168865
Q 004681 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~d~~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
....|+| |+++++++.|++|++|++.. +.+... +. |.+.|++++|+|++.++++|+.||+|++||+.....
T Consensus 62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~----~~~~~~-~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINAKDTVYVLSLYS----QKVLTT-VF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEET-TTEEEEEETTCEEEEEETTT----CSEEEE-EE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEECC-CCEEEEEECCCEEEEEECCC----CCEEEE-EC---CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 9999908-98899998959599998999----968999-74---899879999879999899994999299999999962
Q ss_pred ----------------------------CCC-CCCE----EEEEEEEECCCCEEEEECCC----------------CCCC
Q ss_conf ----------------------------554-4310----11248851698806630137----------------8999
Q 004681 423 ----------------------------SLE-EENV----NMESQLYQPSSKLVMTNDIA----------------ADPK 453 (737)
Q Consensus 423 ----------------------------~~g-~~~~----~~~~~i~~~~~~~~~~~~~~----------------~~h~ 453 (737)
+.+ .... ...+ +|+..++.....+.. .+|.
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred CCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 65030432100025445789738999766999989999189849-99877896579983355776777654433234567
Q ss_pred CCEEEEEEE--CCEEEEEE-CCEEEEEECCCCCEEEE--EC---C-------------CCCCEEEEEEC----CCC--EE
Q ss_conf 986999980--99999984-89099998799717899--61---8-------------99986899995----999--59
Q 004681 454 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LF 506 (737)
Q Consensus 454 ~~V~~i~~s--~~~l~s~~-dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~i~~s----~~~--~l 506 (737)
..|.+++|+ +++|++++ ||.|++||+.+++.+.. +. . +...|.+++|+ |++ .+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEE
T ss_conf 77689998599999999989993999987899688888501234578777678888555677457999734999887899
Q ss_pred EEEECC-----CEEEEEE--------------------------------------------------------------
Q ss_conf 999889-----9099995--------------------------------------------------------------
Q 004681 507 AFGFDD-----SSILVHC-------------------------------------------------------------- 519 (737)
Q Consensus 507 ~sgs~d-----g~I~iwd-------------------------------------------------------------- 519 (737)
++|+.+ ..+.+|+
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEC
T ss_conf 96887777888528999547898755542556546641745227874189995479999778898867787850699991
Q ss_pred ---------CCCCCEEEE-------ECCCCCCEEE----------------------------------EEEECCCCEEE
Q ss_conf ---------699927999-------7377865689----------------------------------99908999999
Q 004681 520 ---------PCTKKTKAK-------LKGHQNRITC----------------------------------LAYSLSLNVLV 549 (737)
Q Consensus 520 ---------~~~~~~~~~-------l~~~~~~v~~----------------------------------i~~sp~~~~l~ 549 (737)
+.++..... +..|...|++ ++|+|+++.++
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 79848999789998556555689852235897248999974999998888604699975457857787533366675899
Q ss_pred EEECCCCEEEEECCCCCEEECEEEE-----ECCCCCCCCCCCEEEEEEECCCCEEEEE-ECCCEEEEECCCCC-------
Q ss_conf 9958994999957998024102101-----0014887788773899990699799999-16819999689994-------
Q 004681 550 SSGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------- 616 (737)
Q Consensus 550 s~s~dg~I~iwdl~~~~~~~~~~~~-----~~~~~~~~~~~~v~~i~~sp~g~~l~~~-~dg~I~iwd~~~~~------- 616 (737)
+++.|++|++||+.++.......+. .+..+|. ..|.+++|+|++++|+++ .|+.|++|++.+++
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~ 528 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------
T ss_pred EECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCC---CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC
T ss_conf 9658983899978776456773677501541377888---7646999638999699994585799999248655575455
Q ss_pred --------------------------------------EEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf --------------------------------------457842899998958999905998999994699099998599
Q 004681 617 --------------------------------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 617 --------------------------------------~~~~~~~~~h~~~i~~i~~spdg~~l~sgs~dg~I~iwd~~~ 658 (737)
++..+.+ |...|++++||||| +|++|+.|++|++||+.+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCCEEEEEECCCC-EEEEEECCCCEEEEECCC
T ss_conf 778665113455134679654322423689887776014699986--88867799964876-899995897699998889
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEEEC-----CCCC---CEEEEEECCCCEEEEEC---CCCC
Q ss_conf 806789711211478875575101899992-----5999---89999979992999945---8994
Q 004681 659 LELRCQINLTAYAQPGTISLELYPLVIAAH-----PLEP---NRIALGLTNGRVHVIEP---LESE 713 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s-----p~d~---~~las~s~Dg~V~iWd~---~~~~ 713 (737)
+..+.......+ ..|| ... +.+++|+ | |+ .+|++|+.||+|++|++ .+++
T Consensus 606 ~~~~~~~~~~~~-~~gh-~~~--V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 606 PAIIYMENIREI-SGAQ-SAC--VTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp TEEEEEEEGGGT-CSSC-CCC--EEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred CEEEEEEEHHHH-CCCC-CCC--EEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 839997024672-6466-661--3999999984178-98763389999568739999995589986
Done!