Query 004683
Match_columns 737
No_of_seqs 792 out of 4248
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 11:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 7.5E-59 1.6E-63 454.4 30.4 458 140-712 15-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.8E-58 3.8E-63 438.2 25.3 459 141-709 6-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 9.5E-50 2E-54 387.2 28.4 314 345-708 121-479 (480)
4 KOG0293 WD40 repeat-containing 100.0 7.8E-46 1.7E-50 363.1 28.3 444 1-658 61-514 (519)
5 KOG0273 Beta-transducin family 100.0 7.9E-44 1.7E-48 355.0 32.7 317 347-710 186-523 (524)
6 KOG0271 Notchless-like WD40 re 100.0 1.7E-41 3.8E-46 329.7 26.1 287 382-716 111-445 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 1E-40 2.3E-45 328.8 28.5 268 347-655 183-458 (459)
8 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-41 9.3E-46 331.5 22.5 278 387-709 174-459 (459)
9 KOG0286 G-protein beta subunit 100.0 2.1E-38 4.6E-43 298.7 31.9 291 321-655 47-343 (343)
10 KOG0286 G-protein beta subunit 100.0 3.8E-38 8.2E-43 297.0 32.9 282 382-708 51-343 (343)
11 KOG0279 G protein beta subunit 100.0 1.9E-37 4.1E-42 290.8 33.0 295 381-711 10-314 (315)
12 KOG0291 WD40-repeat-containing 100.0 2.6E-35 5.6E-40 309.0 39.7 343 344-715 150-555 (893)
13 KOG0295 WD40 repeat-containing 100.0 1E-36 2.2E-41 295.4 24.2 281 382-709 104-405 (406)
14 KOG0291 WD40-repeat-containing 100.0 4.3E-35 9.3E-40 307.4 37.6 327 345-712 313-711 (893)
15 KOG0279 G protein beta subunit 100.0 1.4E-35 3.1E-40 278.1 30.5 273 350-658 27-314 (315)
16 KOG0318 WD40 repeat stress pro 100.0 4.8E-34 1.1E-38 288.6 39.2 353 345-714 65-564 (603)
17 KOG0265 U5 snRNP-specific prot 100.0 5E-35 1.1E-39 277.1 27.4 282 382-708 43-336 (338)
18 KOG0319 WD40-repeat-containing 100.0 2E-35 4.4E-40 309.9 27.3 360 313-712 131-621 (775)
19 KOG0315 G-protein beta subunit 100.0 3.6E-34 7.9E-39 264.1 29.4 273 401-718 11-298 (311)
20 KOG0318 WD40 repeat stress pro 100.0 3.9E-33 8.4E-38 282.1 39.6 342 343-710 194-602 (603)
21 KOG0315 G-protein beta subunit 100.0 5E-34 1.1E-38 263.3 29.7 281 351-667 10-298 (311)
22 KOG0282 mRNA splicing factor [ 100.0 3.1E-35 6.7E-40 295.1 18.5 284 382-708 210-503 (503)
23 KOG0645 WD40 repeat protein [G 100.0 9E-33 2E-37 258.3 33.5 290 382-710 10-311 (312)
24 KOG0284 Polyadenylation factor 100.0 4.3E-35 9.3E-40 287.8 18.0 279 388-711 96-381 (464)
25 KOG0263 Transcription initiati 100.0 2.2E-34 4.8E-39 305.7 23.9 271 374-660 367-652 (707)
26 KOG0296 Angio-associated migra 100.0 1.1E-32 2.4E-37 267.7 33.0 316 347-710 72-398 (399)
27 KOG0263 Transcription initiati 100.0 3.9E-33 8.5E-38 296.2 32.2 242 339-614 378-650 (707)
28 KOG0295 WD40 repeat-containing 100.0 1.3E-33 2.8E-38 273.9 24.6 270 347-656 116-405 (406)
29 KOG0319 WD40-repeat-containing 100.0 9.2E-33 2E-37 290.0 32.4 348 342-714 108-581 (775)
30 KOG0284 Polyadenylation factor 100.0 1.5E-34 3.3E-39 284.0 17.5 274 344-657 101-380 (464)
31 KOG0285 Pleiotropic regulator 100.0 3.4E-33 7.5E-38 269.8 25.4 290 382-711 147-440 (460)
32 KOG0273 Beta-transducin family 100.0 3.9E-32 8.5E-37 271.6 30.6 275 340-657 236-523 (524)
33 KOG0275 Conserved WD40 repeat- 100.0 2E-33 4.3E-38 267.7 19.9 277 347-655 221-507 (508)
34 KOG0266 WD40 repeat-containing 100.0 5E-32 1.1E-36 296.7 33.7 287 387-710 158-454 (456)
35 KOG0316 Conserved WD40 repeat- 100.0 8.1E-32 1.8E-36 246.6 26.6 280 382-710 13-299 (307)
36 PLN00181 protein SPA1-RELATED; 100.0 5E-31 1.1E-35 310.4 40.6 319 360-709 457-792 (793)
37 KOG0645 WD40 repeat protein [G 100.0 3.6E-31 7.9E-36 247.5 31.0 271 347-657 22-311 (312)
38 cd00200 WD40 WD40 domain, foun 100.0 1E-30 2.2E-35 269.4 37.4 277 387-708 8-289 (289)
39 KOG0306 WD40-repeat-containing 100.0 4.4E-31 9.5E-36 277.3 31.5 243 449-711 369-623 (888)
40 KOG0278 Serine/threonine kinas 100.0 5.4E-32 1.2E-36 249.7 17.9 292 385-723 11-312 (334)
41 KOG0266 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 286.1 31.5 280 344-657 164-454 (456)
42 KOG0265 U5 snRNP-specific prot 100.0 1.2E-30 2.5E-35 247.5 26.9 276 345-655 53-336 (338)
43 KOG0276 Vesicle coat complex C 100.0 1.8E-30 4E-35 267.2 27.0 275 387-706 12-295 (794)
44 KOG0292 Vesicle coat complex C 100.0 3E-30 6.6E-35 274.7 28.4 288 387-712 8-323 (1202)
45 KOG0640 mRNA cleavage stimulat 100.0 1.1E-29 2.4E-34 241.1 29.0 301 387-710 111-426 (430)
46 cd00200 WD40 WD40 domain, foun 100.0 5E-29 1.1E-33 256.7 36.6 269 346-655 16-289 (289)
47 KOG0316 Conserved WD40 repeat- 100.0 1.9E-30 4.2E-35 237.6 22.5 242 451-714 15-261 (307)
48 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.8E-36 256.7 15.4 264 349-662 205-482 (499)
49 KOG0285 Pleiotropic regulator 100.0 6.4E-30 1.4E-34 247.2 25.6 272 346-657 158-439 (460)
50 KOG0292 Vesicle coat complex C 100.0 2.2E-29 4.8E-34 268.2 31.9 273 345-657 15-321 (1202)
51 KOG0296 Angio-associated migra 100.0 2.3E-29 4.9E-34 244.7 28.2 290 382-717 60-363 (399)
52 KOG0772 Uncharacterized conser 100.0 2.5E-29 5.3E-34 253.8 25.4 296 382-712 163-490 (641)
53 PLN00181 protein SPA1-RELATED; 100.0 2.6E-28 5.6E-33 287.4 38.2 282 343-656 487-792 (793)
54 KOG0282 mRNA splicing factor [ 100.0 2.9E-30 6.2E-35 259.5 18.1 290 320-655 205-503 (503)
55 KOG0283 WD40 repeat-containing 100.0 2E-29 4.3E-34 270.5 25.7 268 386-658 265-577 (712)
56 KOG0281 Beta-TrCP (transducin 100.0 2E-30 4.4E-35 249.5 16.0 278 387-713 196-480 (499)
57 KOG1407 WD40 repeat protein [F 100.0 2.3E-28 5.1E-33 227.5 28.3 278 387-710 19-311 (313)
58 KOG0276 Vesicle coat complex C 100.0 1.4E-28 3E-33 253.4 29.2 232 343-612 59-297 (794)
59 KOG0313 Microtubule binding pr 100.0 8.5E-29 1.8E-33 241.7 25.8 273 387-710 104-418 (423)
60 KOG0313 Microtubule binding pr 100.0 2.4E-28 5.2E-33 238.6 27.4 270 351-657 115-418 (423)
61 KOG0288 WD40 repeat protein Ti 100.0 1.4E-29 3.1E-34 249.5 17.5 279 387-708 174-459 (459)
62 KOG1446 Histone H3 (Lys4) meth 100.0 6.5E-27 1.4E-31 224.6 34.0 284 387-713 13-306 (311)
63 KOG0278 Serine/threonine kinas 100.0 5.5E-29 1.2E-33 229.9 18.8 287 324-662 9-302 (334)
64 KOG0973 Histone transcription 100.0 4.2E-28 9.2E-33 266.5 27.6 308 345-713 19-358 (942)
65 KOG0643 Translation initiation 100.0 4.6E-28 9.9E-33 226.2 23.6 288 382-710 6-317 (327)
66 KOG0306 WD40-repeat-containing 100.0 4.6E-27 1E-31 247.2 31.4 303 358-711 341-665 (888)
67 KOG0274 Cdc4 and related F-box 100.0 4.4E-27 9.5E-32 256.6 30.6 271 350-665 217-490 (537)
68 KOG1408 WD40 repeat protein [F 100.0 3.2E-27 6.9E-32 246.2 27.6 350 342-711 327-714 (1080)
69 KOG0277 Peroxisomal targeting 100.0 2.3E-27 4.9E-32 220.0 20.4 237 452-709 59-308 (311)
70 KOG1539 WD repeat protein [Gen 100.0 5.9E-26 1.3E-30 241.8 33.5 336 343-710 206-648 (910)
71 KOG0310 Conserved WD40 repeat- 100.0 9E-27 1.9E-31 234.9 25.6 279 388-711 26-310 (487)
72 KOG0294 WD40 repeat-containing 100.0 2.9E-26 6.3E-31 219.1 27.5 243 447-712 37-283 (362)
73 KOG0283 WD40 repeat-containing 100.0 3.6E-27 7.8E-32 253.2 23.6 241 451-711 265-577 (712)
74 PTZ00421 coronin; Provisional 100.0 9.2E-26 2E-30 246.2 35.1 259 387-665 19-298 (493)
75 KOG0277 Peroxisomal targeting 100.0 7.6E-27 1.6E-31 216.6 21.1 261 359-656 36-308 (311)
76 KOG0643 Translation initiation 100.0 5.2E-26 1.1E-30 212.5 26.8 269 347-658 18-318 (327)
77 KOG0305 Anaphase promoting com 100.0 3.2E-26 7E-31 240.3 28.0 273 344-659 182-463 (484)
78 KOG0288 WD40 repeat protein Ti 100.0 2.5E-27 5.5E-32 233.7 18.3 278 341-655 177-459 (459)
79 KOG0274 Cdc4 and related F-box 100.0 7.4E-26 1.6E-30 247.0 31.4 275 387-715 207-487 (537)
80 KOG0772 Uncharacterized conser 99.9 2.4E-26 5.1E-31 232.3 23.9 304 320-657 158-487 (641)
81 KOG0641 WD40 repeat protein [G 99.9 7.1E-25 1.5E-29 199.6 31.0 302 388-710 32-349 (350)
82 PTZ00421 coronin; Provisional 99.9 3.5E-25 7.6E-30 241.6 34.8 285 347-659 28-333 (493)
83 KOG0268 Sof1-like rRNA process 99.9 2.5E-27 5.3E-32 230.0 15.8 281 382-713 62-348 (433)
84 KOG0641 WD40 repeat protein [G 99.9 8.1E-25 1.8E-29 199.3 30.7 291 335-657 28-349 (350)
85 KOG0640 mRNA cleavage stimulat 99.9 2.2E-26 4.9E-31 218.8 21.1 291 338-657 111-426 (430)
86 KOG0300 WD40 repeat-containing 99.9 6.1E-26 1.3E-30 216.2 23.7 289 382-713 144-479 (481)
87 KOG1407 WD40 repeat protein [F 99.9 5.8E-26 1.2E-30 211.6 23.0 246 451-720 18-271 (313)
88 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-24 3.2E-29 208.5 31.9 245 452-715 13-267 (311)
89 KOG0308 Conserved WD40 repeat- 99.9 3.1E-26 6.7E-31 237.7 21.0 325 348-712 34-395 (735)
90 KOG0305 Anaphase promoting com 99.9 1.9E-25 4.1E-30 234.6 26.4 272 391-712 180-463 (484)
91 KOG0299 U3 snoRNP-associated p 99.9 2.5E-25 5.4E-30 222.8 25.7 290 387-708 141-454 (479)
92 KOG0289 mRNA splicing factor [ 99.9 4.2E-25 9.1E-30 219.2 26.8 270 347-656 227-505 (506)
93 KOG0268 Sof1-like rRNA process 99.9 1.7E-26 3.8E-31 224.1 16.0 269 352-665 80-353 (433)
94 KOG0300 WD40 repeat-containing 99.9 3.7E-25 7.9E-30 210.9 21.7 289 353-659 162-478 (481)
95 KOG0301 Phospholipase A2-activ 99.9 8.9E-25 1.9E-29 228.6 26.4 275 382-711 10-289 (745)
96 PTZ00420 coronin; Provisional 99.9 9.6E-24 2.1E-28 231.2 35.5 222 471-713 53-296 (568)
97 KOG0647 mRNA export protein (c 99.9 2.8E-24 6.1E-29 204.4 25.6 270 387-699 26-312 (347)
98 KOG1274 WD40 repeat protein [G 99.9 4.8E-24 1E-28 230.0 30.5 282 387-707 12-297 (933)
99 KOG0289 mRNA splicing factor [ 99.9 3.2E-24 6.9E-29 213.0 26.8 278 388-709 219-505 (506)
100 PTZ00420 coronin; Provisional 99.9 3.7E-23 8E-28 226.6 36.9 220 451-689 72-316 (568)
101 KOG0299 U3 snoRNP-associated p 99.9 1.7E-24 3.6E-29 216.9 23.8 268 346-646 149-444 (479)
102 KOG0639 Transducin-like enhanc 99.9 6.5E-25 1.4E-29 220.9 20.9 279 387-709 418-703 (705)
103 KOG0310 Conserved WD40 repeat- 99.9 3.9E-24 8.5E-29 215.9 26.5 256 361-659 48-311 (487)
104 KOG0308 Conserved WD40 repeat- 99.9 4.7E-25 1E-29 229.0 18.6 279 393-710 29-327 (735)
105 KOG2096 WD40 repeat protein [G 99.9 9.4E-24 2E-28 201.8 25.5 290 382-709 82-401 (420)
106 KOG2106 Uncharacterized conser 99.9 2.4E-22 5.3E-27 203.0 35.6 349 318-710 93-521 (626)
107 KOG2096 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 199.0 26.5 291 345-655 92-400 (420)
108 KOG1036 Mitotic spindle checkp 99.9 3.1E-23 6.7E-28 198.3 26.6 267 388-700 13-294 (323)
109 KOG0294 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 196.4 28.4 236 385-659 40-283 (362)
110 KOG1539 WD repeat protein [Gen 99.9 2.3E-22 5.1E-27 214.6 35.2 332 352-718 173-614 (910)
111 KOG4283 Transcription-coupled 99.9 3.2E-23 7E-28 196.2 24.7 299 387-710 42-365 (397)
112 KOG1063 RNA polymerase II elon 99.9 4.8E-23 1E-27 215.6 28.1 366 320-710 182-699 (764)
113 KOG2048 WD40 repeat protein [G 99.9 7.1E-22 1.5E-26 206.8 36.5 355 342-712 28-550 (691)
114 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.9E-28 219.4 22.7 275 353-658 394-714 (1080)
115 KOG1332 Vesicle coat complex C 99.9 7E-24 1.5E-28 195.9 18.2 244 387-658 10-287 (299)
116 KOG0301 Phospholipase A2-activ 99.9 3.6E-23 7.9E-28 216.7 25.7 262 349-658 23-289 (745)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-21 4.2E-26 203.1 38.1 278 351-667 1-289 (300)
118 KOG0264 Nucleosome remodeling 99.9 1.7E-23 3.6E-28 210.1 20.3 251 387-658 123-405 (422)
119 KOG0647 mRNA export protein (c 99.9 2.6E-22 5.6E-27 191.1 26.0 268 344-645 32-311 (347)
120 KOG1063 RNA polymerase II elon 99.9 3.9E-22 8.3E-27 208.9 29.5 340 353-712 161-650 (764)
121 KOG0639 Transducin-like enhanc 99.9 2.7E-23 5.9E-28 209.3 20.0 273 346-656 426-703 (705)
122 KOG0321 WD40 repeat-containing 99.9 8.9E-23 1.9E-27 211.7 22.7 294 392-712 53-393 (720)
123 KOG2048 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 204.5 31.7 288 388-711 25-320 (691)
124 KOG1332 Vesicle coat complex C 99.9 5.8E-23 1.3E-27 189.9 18.6 254 451-720 9-295 (299)
125 KOG2055 WD40 repeat protein [G 99.9 4.4E-22 9.5E-27 199.5 26.0 283 388-710 213-512 (514)
126 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 203.0 21.8 247 463-718 50-315 (476)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.3E-21 2E-25 198.0 36.2 272 400-719 1-288 (300)
128 KOG0973 Histone transcription 99.9 1.8E-22 3.9E-27 222.5 23.4 263 387-718 12-320 (942)
129 KOG1036 Mitotic spindle checkp 99.9 1E-21 2.3E-26 187.9 25.2 255 451-721 11-273 (323)
130 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.8E-25 190.6 34.1 342 345-720 71-487 (626)
131 KOG0264 Nucleosome remodeling 99.9 2.2E-22 4.8E-27 202.0 20.9 245 347-613 132-404 (422)
132 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 187.3 23.6 283 391-718 26-329 (405)
133 KOG0646 WD40 repeat protein [G 99.9 8.4E-22 1.8E-26 198.1 22.0 233 401-666 51-316 (476)
134 KOG0267 Microtubule severing p 99.9 1.7E-23 3.6E-28 219.9 9.8 229 451-701 26-259 (825)
135 KOG4283 Transcription-coupled 99.9 3.7E-21 8.1E-26 182.2 24.1 279 349-657 54-365 (397)
136 KOG1273 WD40 repeat protein [G 99.9 5.7E-21 1.2E-25 182.7 23.7 278 344-660 28-325 (405)
137 KOG2445 Nuclear pore complex c 99.9 2.1E-20 4.6E-25 178.5 27.5 277 451-734 11-347 (361)
138 KOG2055 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 190.8 24.9 282 344-657 218-512 (514)
139 KOG0269 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 209.1 18.9 281 347-659 47-342 (839)
140 KOG0269 WD40 repeat-containing 99.9 9.5E-22 2.1E-26 208.4 19.5 286 389-712 40-342 (839)
141 KOG0650 WD40 repeat nucleolar 99.9 8.1E-21 1.7E-25 195.7 25.4 281 382-707 396-732 (733)
142 KOG4378 Nuclear protein COP1 [ 99.9 4E-21 8.6E-26 193.7 22.4 288 354-689 5-303 (673)
143 KOG1034 Transcriptional repres 99.9 1E-20 2.2E-25 182.2 23.4 291 387-710 37-383 (385)
144 KOG2445 Nuclear pore complex c 99.9 2E-20 4.3E-25 178.8 25.0 247 387-658 12-319 (361)
145 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.7E-25 188.0 22.7 292 387-710 185-495 (498)
146 KOG1274 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 199.3 27.1 241 451-711 11-263 (933)
147 KOG0267 Microtubule severing p 99.9 4.5E-22 9.8E-27 209.2 10.7 250 353-649 6-260 (825)
148 KOG2919 Guanine nucleotide-bin 99.9 4.5E-20 9.7E-25 177.3 22.9 275 391-701 52-361 (406)
149 KOG0650 WD40 repeat nucleolar 99.9 1E-19 2.2E-24 187.7 24.1 303 323-654 394-732 (733)
150 KOG0270 WD40 repeat-containing 99.8 1E-19 2.3E-24 182.0 22.4 232 463-713 192-452 (463)
151 KOG0270 WD40 repeat-containing 99.8 1.2E-19 2.7E-24 181.5 20.8 295 347-663 133-455 (463)
152 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.3E-24 183.5 20.2 239 454-713 35-283 (673)
153 KOG0321 WD40 repeat-containing 99.8 2.4E-19 5.3E-24 186.4 21.6 281 350-659 63-393 (720)
154 KOG1009 Chromatin assembly com 99.8 8.4E-19 1.8E-23 173.7 24.4 286 353-662 28-377 (434)
155 KOG1538 Uncharacterized conser 99.8 2.8E-19 6.2E-24 185.9 22.0 268 341-657 14-293 (1081)
156 KOG2919 Guanine nucleotide-bin 99.8 6.3E-19 1.4E-23 169.4 22.7 271 346-647 56-360 (406)
157 KOG0307 Vesicle coat complex C 99.8 1.4E-20 3E-25 208.6 12.9 243 452-713 63-330 (1049)
158 KOG0302 Ribosome Assembly prot 99.8 2.1E-19 4.6E-24 176.0 19.7 244 451-708 149-436 (440)
159 KOG0649 WD40 repeat protein [G 99.8 7.4E-18 1.6E-22 156.0 26.0 286 389-707 11-313 (325)
160 KOG1445 Tumor-specific antigen 99.8 6.1E-19 1.3E-23 182.5 20.3 120 386-522 77-201 (1012)
161 KOG4328 WD40 protein [Function 99.8 1.2E-18 2.7E-23 174.8 21.1 253 451-717 184-457 (498)
162 KOG1538 Uncharacterized conser 99.8 2E-18 4.3E-23 179.7 22.0 271 390-712 14-295 (1081)
163 KOG1009 Chromatin assembly com 99.8 1.4E-17 2.9E-22 165.2 25.5 300 388-713 13-375 (434)
164 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 5.1E-23 168.8 18.3 207 490-712 149-380 (440)
165 KOG4227 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 164.9 21.3 298 387-710 55-387 (609)
166 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-15 4.8E-20 164.1 42.8 326 343-718 69-408 (466)
167 KOG1034 Transcriptional repres 99.8 2.4E-17 5.3E-22 159.1 21.9 272 354-657 58-383 (385)
168 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-15 5.8E-20 163.4 41.1 312 348-711 119-443 (466)
169 KOG1963 WD40 repeat protein [G 99.8 5E-16 1.1E-20 168.4 33.4 358 346-718 23-501 (792)
170 KOG0307 Vesicle coat complex C 99.8 3.4E-18 7.3E-23 189.8 16.9 239 346-616 71-330 (1049)
171 KOG1334 WD40 repeat protein [G 99.8 2.7E-18 5.8E-23 173.6 14.6 297 382-713 138-469 (559)
172 KOG0649 WD40 repeat protein [G 99.8 3.7E-16 8E-21 144.8 27.0 275 347-654 18-313 (325)
173 KOG1007 WD repeat protein TSSC 99.8 4.9E-17 1.1E-21 154.2 21.3 213 484-710 114-361 (370)
174 KOG0642 Cell-cycle nuclear pro 99.8 8.1E-18 1.8E-22 173.4 15.1 259 387-667 293-571 (577)
175 KOG0303 Actin-binding protein 99.8 1.2E-16 2.6E-21 157.7 22.5 230 385-638 78-320 (472)
176 KOG1310 WD40 repeat protein [G 99.8 8.1E-17 1.8E-21 164.7 21.9 210 382-615 46-305 (758)
177 KOG1188 WD40 repeat protein [G 99.8 8.4E-17 1.8E-21 156.3 20.3 276 401-710 41-346 (376)
178 KOG0303 Actin-binding protein 99.7 9.3E-17 2E-21 158.5 19.0 201 451-660 79-297 (472)
179 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.3E-20 144.3 25.5 284 388-706 44-361 (364)
180 KOG1517 Guanine nucleotide bin 99.7 6.4E-16 1.4E-20 169.3 26.2 300 341-660 1066-1384(1387)
181 PRK11028 6-phosphogluconolacto 99.7 7.5E-15 1.6E-19 155.7 34.2 269 355-657 6-304 (330)
182 KOG1007 WD repeat protein TSSC 99.7 3.5E-16 7.6E-21 148.5 20.2 258 333-613 57-361 (370)
183 KOG0642 Cell-cycle nuclear pro 99.7 9.2E-17 2E-21 165.6 16.9 249 451-718 292-569 (577)
184 PRK11028 6-phosphogluconolacto 99.7 2.1E-14 4.5E-19 152.3 34.6 244 453-711 34-305 (330)
185 KOG1587 Cytoplasmic dynein int 99.7 1.7E-15 3.7E-20 164.5 26.5 262 361-658 222-517 (555)
186 KOG1517 Guanine nucleotide bin 99.7 9.9E-16 2.1E-20 167.8 24.4 294 389-713 1065-1384(1387)
187 KOG1240 Protein kinase contain 99.7 1.9E-15 4.1E-20 168.2 26.1 250 387-660 1047-1337(1431)
188 KOG0322 G-protein beta subunit 99.7 2.4E-16 5.3E-21 147.8 16.1 264 353-656 27-322 (323)
189 KOG0644 Uncharacterized conser 99.7 4.8E-17 1E-21 173.8 12.1 273 386-713 188-471 (1113)
190 KOG2110 Uncharacterized conser 99.7 1E-14 2.2E-19 143.6 26.9 218 388-616 5-251 (391)
191 KOG1188 WD40 repeat protein [G 99.7 1E-15 2.2E-20 148.8 19.5 275 352-657 41-346 (376)
192 KOG0322 G-protein beta subunit 99.7 3.4E-16 7.4E-21 146.9 13.6 243 451-709 12-322 (323)
193 KOG1963 WD40 repeat protein [G 99.7 6.6E-14 1.4E-18 152.2 32.2 332 347-712 168-540 (792)
194 KOG2110 Uncharacterized conser 99.7 4.7E-14 1E-18 138.9 28.2 240 452-713 4-251 (391)
195 KOG1524 WD40 repeat-containing 99.7 2.2E-15 4.7E-20 154.0 18.1 206 465-709 77-285 (737)
196 KOG1445 Tumor-specific antigen 99.7 2.2E-15 4.7E-20 156.5 18.2 238 396-661 587-848 (1012)
197 KOG4227 WD40 repeat protein [G 99.7 8.9E-15 1.9E-19 144.0 21.4 293 335-657 52-387 (609)
198 KOG0644 Uncharacterized conser 99.7 1.2E-16 2.7E-21 170.7 8.7 234 451-713 188-429 (1113)
199 KOG0290 Conserved WD40 repeat- 99.7 2.1E-14 4.5E-19 136.7 22.2 265 351-647 59-356 (364)
200 KOG1587 Cytoplasmic dynein int 99.7 3.9E-14 8.4E-19 154.1 27.1 243 452-711 241-517 (555)
201 KOG1524 WD40 repeat-containing 99.7 3.2E-15 6.9E-20 152.8 17.0 205 350-609 74-282 (737)
202 KOG4497 Uncharacterized conser 99.6 4.6E-14 1E-18 136.4 22.3 303 345-703 54-425 (447)
203 PF02239 Cytochrom_D1: Cytochr 99.6 7.2E-13 1.6E-17 140.5 32.8 325 354-727 9-364 (369)
204 PRK01742 tolB translocation pr 99.6 4.9E-14 1.1E-18 154.3 24.4 234 360-689 183-425 (429)
205 KOG2321 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 143.7 23.4 274 344-661 56-347 (703)
206 KOG4497 Uncharacterized conser 99.6 7.6E-14 1.6E-18 135.0 21.2 271 393-711 13-392 (447)
207 KOG0771 Prolactin regulatory e 99.6 7.8E-15 1.7E-19 147.0 15.1 196 457-658 148-355 (398)
208 PRK01742 tolB translocation pr 99.6 1.2E-13 2.7E-18 151.2 24.2 207 471-710 183-401 (429)
209 KOG0771 Prolactin regulatory e 99.6 1.8E-14 3.9E-19 144.4 15.7 197 496-711 148-355 (398)
210 KOG1272 WD40-repeat-containing 99.6 4.8E-15 1E-19 149.4 11.4 282 388-718 129-417 (545)
211 KOG2139 WD40 repeat protein [G 99.6 6.3E-13 1.4E-17 130.4 25.7 282 388-710 98-431 (445)
212 KOG1240 Protein kinase contain 99.6 3.5E-13 7.7E-18 150.5 27.0 256 451-715 1046-1339(1431)
213 KOG1523 Actin-related protein 99.6 6.2E-13 1.4E-17 128.6 23.2 230 388-639 10-261 (361)
214 KOG1523 Actin-related protein 99.6 2.7E-13 5.9E-18 131.1 20.2 202 452-660 9-239 (361)
215 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 127.9 25.0 291 347-657 106-431 (445)
216 KOG1334 WD40 repeat protein [G 99.6 3.5E-14 7.6E-19 144.1 14.3 294 339-661 142-470 (559)
217 KOG2111 Uncharacterized conser 99.5 1.1E-11 2.3E-16 120.2 29.1 215 389-614 6-257 (346)
218 PF10282 Lactonase: Lactonase, 99.5 1.5E-10 3.2E-15 123.1 39.6 285 354-664 2-331 (345)
219 KOG2394 WD40 protein DMR-N9 [G 99.5 5.3E-13 1.2E-17 137.1 19.8 241 456-712 126-454 (636)
220 KOG2111 Uncharacterized conser 99.5 2.9E-12 6.3E-17 124.1 23.7 238 455-713 7-259 (346)
221 KOG2321 WD40 repeat protein [G 99.5 2.7E-12 5.9E-17 132.9 25.0 291 387-718 50-353 (703)
222 COG2706 3-carboxymuconate cycl 99.5 1.4E-10 3.1E-15 115.1 35.5 279 360-663 15-329 (346)
223 PRK05137 tolB translocation pr 99.5 8.3E-12 1.8E-16 137.2 29.3 215 472-714 182-416 (435)
224 KOG2315 Predicted translation 99.5 2.9E-11 6.2E-16 125.6 30.6 290 388-711 34-391 (566)
225 PRK03629 tolB translocation pr 99.5 1.2E-11 2.6E-16 135.2 27.6 211 472-710 179-406 (429)
226 KOG1354 Serine/threonine prote 99.5 1.6E-12 3.6E-17 126.7 17.9 263 388-660 25-362 (433)
227 PRK04922 tolB translocation pr 99.5 1.2E-11 2.7E-16 135.7 27.3 212 472-711 184-412 (433)
228 PF02239 Cytochrom_D1: Cytochr 99.5 3.6E-11 7.7E-16 127.6 29.5 286 346-666 43-356 (369)
229 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3E-18 139.1 10.3 270 345-659 135-411 (545)
230 KOG1310 WD40 repeat protein [G 99.5 6.9E-13 1.5E-17 136.3 15.2 214 451-666 48-312 (758)
231 KOG3881 Uncharacterized conser 99.5 5.2E-12 1.1E-16 125.5 20.8 251 387-664 54-327 (412)
232 PRK03629 tolB translocation pr 99.5 1.8E-11 3.8E-16 133.9 26.9 211 452-689 197-427 (429)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 6.9E-12 1.5E-16 129.1 21.4 163 463-636 185-383 (636)
234 PF08662 eIF2A: Eukaryotic tra 99.5 5E-12 1.1E-16 121.8 19.2 153 537-715 9-183 (194)
235 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 119.5 20.9 152 497-665 10-186 (194)
236 PRK02889 tolB translocation pr 99.4 2E-11 4.4E-16 133.5 25.8 210 472-709 176-402 (427)
237 COG5354 Uncharacterized protei 99.4 1.2E-10 2.7E-15 119.5 28.3 323 344-713 37-398 (561)
238 PRK05137 tolB translocation pr 99.4 6.6E-11 1.4E-15 130.1 28.7 195 451-661 199-416 (435)
239 PRK04922 tolB translocation pr 99.4 3.8E-11 8.3E-16 131.8 25.3 198 451-665 201-418 (433)
240 PRK02889 tolB translocation pr 99.4 7.8E-11 1.7E-15 128.9 26.7 212 451-689 193-424 (427)
241 PF10282 Lactonase: Lactonase, 99.4 3.3E-09 7.1E-14 112.7 37.2 243 454-711 37-323 (345)
242 KOG2314 Translation initiation 99.4 1.5E-10 3.2E-15 119.8 24.6 324 345-712 216-575 (698)
243 KOG3881 Uncharacterized conser 99.4 5E-11 1.1E-15 118.6 19.2 216 352-595 116-342 (412)
244 TIGR02800 propeller_TolB tol-p 99.4 3.9E-10 8.5E-15 123.8 28.6 210 472-709 170-396 (417)
245 KOG2315 Predicted translation 99.4 1.1E-09 2.4E-14 114.1 29.5 286 347-663 42-395 (566)
246 PRK00178 tolB translocation pr 99.3 1.4E-09 3.1E-14 119.7 28.4 212 473-712 180-408 (430)
247 KOG0974 WD-repeat protein WDR6 99.3 1.9E-10 4.1E-15 127.7 20.6 184 463-658 99-289 (967)
248 KOG1409 Uncharacterized conser 99.2 7.7E-10 1.7E-14 108.4 20.0 232 347-615 32-272 (404)
249 TIGR02800 propeller_TolB tol-p 99.2 3.3E-09 7.1E-14 116.5 27.9 226 362-635 171-416 (417)
250 TIGR02658 TTQ_MADH_Hv methylam 99.2 9.1E-08 2E-12 99.4 36.5 268 361-666 27-339 (352)
251 PRK04792 tolB translocation pr 99.2 3.2E-09 7E-14 116.6 27.4 209 473-709 199-424 (448)
252 TIGR03300 assembly_YfgL outer 99.2 9.7E-09 2.1E-13 111.1 30.8 274 400-720 65-348 (377)
253 KOG2041 WD40 repeat protein [G 99.2 9.1E-10 2E-14 116.8 21.5 296 388-709 14-336 (1189)
254 KOG0974 WD-repeat protein WDR6 99.2 2.5E-10 5.3E-15 126.8 17.8 187 503-712 98-290 (967)
255 PRK01029 tolB translocation pr 99.2 5.7E-09 1.2E-13 113.8 28.4 217 388-639 184-426 (428)
256 COG2706 3-carboxymuconate cycl 99.2 9.7E-08 2.1E-12 95.3 33.9 252 451-718 37-329 (346)
257 TIGR03300 assembly_YfgL outer 99.2 3.3E-08 7.1E-13 106.9 33.0 296 349-707 63-376 (377)
258 PRK04792 tolB translocation pr 99.2 5.4E-09 1.2E-13 114.9 27.0 211 387-637 216-446 (448)
259 PRK00178 tolB translocation pr 99.2 5.2E-09 1.1E-13 115.2 26.8 193 451-659 196-408 (430)
260 COG4946 Uncharacterized protei 99.2 2.8E-08 6E-13 101.4 28.8 169 463-646 332-507 (668)
261 PRK01029 tolB translocation pr 99.2 5.5E-09 1.2E-13 113.9 26.0 220 473-714 166-407 (428)
262 PF04762 IKI3: IKI3 family; I 99.2 1.1E-07 2.3E-12 112.0 38.3 352 342-711 78-520 (928)
263 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 113.8 20.5 198 397-614 2-221 (541)
264 KOG1354 Serine/threonine prote 99.2 9E-10 2E-14 107.8 16.9 257 452-713 24-362 (433)
265 KOG4547 WD40 repeat-containing 99.2 5.6E-09 1.2E-13 109.8 23.8 190 348-564 2-221 (541)
266 KOG0280 Uncharacterized conser 99.2 4.1E-09 9E-14 101.4 20.7 268 361-660 46-336 (339)
267 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.1E-07 6.8E-12 95.4 33.7 229 471-718 76-338 (352)
268 COG5354 Uncharacterized protei 99.1 7.3E-08 1.6E-12 99.5 27.2 283 333-660 65-398 (561)
269 COG4946 Uncharacterized protei 99.1 9E-07 1.9E-11 90.6 34.2 167 505-698 334-506 (668)
270 PLN02919 haloacid dehalogenase 99.1 1.2E-07 2.5E-12 113.9 32.1 254 457-714 571-892 (1057)
271 KOG2041 WD40 repeat protein [G 99.1 3.2E-09 6.9E-14 112.8 15.5 228 452-701 13-279 (1189)
272 KOG4190 Uncharacterized conser 99.0 1.5E-09 3.3E-14 111.9 12.0 270 349-653 745-1032(1034)
273 KOG0280 Uncharacterized conser 99.0 4.1E-08 8.9E-13 94.7 20.7 246 452-713 68-336 (339)
274 KOG1064 RAVE (regulator of V-A 99.0 1.3E-09 2.9E-14 126.4 12.5 181 344-564 2213-2399(2439)
275 KOG1912 WD40 repeat protein [G 99.0 2.3E-08 4.9E-13 107.7 19.4 304 382-713 9-367 (1062)
276 KOG1832 HIV-1 Vpr-binding prot 99.0 4.3E-10 9.3E-15 121.9 6.6 297 262-645 1011-1319(1516)
277 KOG4532 WD40-like repeat conta 99.0 1.3E-07 2.7E-12 90.1 22.0 241 463-713 84-334 (344)
278 PLN02919 haloacid dehalogenase 99.0 3.6E-07 7.9E-12 109.7 31.9 257 392-661 571-892 (1057)
279 PF13360 PQQ_2: PQQ-like domai 99.0 2.6E-07 5.7E-12 92.9 26.0 225 471-717 2-237 (238)
280 KOG2314 Translation initiation 99.0 2.3E-07 5.1E-12 96.6 24.7 273 337-648 247-558 (698)
281 KOG1064 RAVE (regulator of V-A 99.0 3.5E-09 7.6E-14 123.0 12.4 193 452-667 2207-2408(2439)
282 KOG4190 Uncharacterized conser 98.9 2.8E-09 6.1E-14 110.0 9.3 222 484-727 727-965 (1034)
283 KOG0309 Conserved WD40 repeat- 98.9 1.3E-08 2.9E-13 108.7 14.3 284 339-658 24-340 (1081)
284 PRK11138 outer membrane biogen 98.9 9.1E-07 2E-11 96.1 28.7 287 400-720 69-363 (394)
285 PRK11138 outer membrane biogen 98.9 2.2E-06 4.7E-11 93.2 31.6 259 399-709 119-393 (394)
286 PRK04043 tolB translocation pr 98.9 9.4E-07 2E-11 95.8 28.4 209 472-711 169-401 (419)
287 PF04762 IKI3: IKI3 family; I 98.9 1.8E-06 3.9E-11 101.8 32.4 236 452-709 74-378 (928)
288 KOG1409 Uncharacterized conser 98.9 6.7E-08 1.5E-12 95.1 16.6 245 382-660 20-273 (404)
289 KOG0309 Conserved WD40 repeat- 98.9 1.7E-08 3.6E-13 108.0 12.5 279 388-711 24-340 (1081)
290 KOG4532 WD40-like repeat conta 98.9 6.6E-07 1.4E-11 85.3 21.4 234 399-659 83-333 (344)
291 PF15492 Nbas_N: Neuroblastoma 98.8 2.3E-06 5E-11 83.2 25.1 220 498-723 3-274 (282)
292 PF13360 PQQ_2: PQQ-like domai 98.8 2.4E-06 5.1E-11 85.9 26.2 198 460-664 32-237 (238)
293 COG5170 CDC55 Serine/threonine 98.8 5.7E-08 1.2E-12 94.1 12.7 261 387-657 25-367 (460)
294 PF08450 SGL: SMP-30/Gluconola 98.8 1.8E-05 3.8E-10 80.0 31.5 213 458-697 4-243 (246)
295 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 81.3 27.7 216 464-700 18-276 (305)
296 PF07433 DUF1513: Protein of u 98.8 1.1E-05 2.4E-10 81.0 27.7 230 391-651 7-279 (305)
297 PRK04043 tolB translocation pr 98.8 7.5E-06 1.6E-10 88.8 28.9 189 389-614 188-401 (419)
298 KOG2695 WD40 repeat protein [G 98.8 2.3E-08 5E-13 98.3 8.4 165 497-668 216-387 (425)
299 PF08450 SGL: SMP-30/Gluconola 98.7 2.9E-05 6.4E-10 78.4 30.8 219 393-646 4-244 (246)
300 KOG3914 WD repeat protein WDR4 98.7 1.7E-07 3.8E-12 94.3 12.6 160 536-715 65-228 (390)
301 KOG0882 Cyclophilin-related pe 98.6 4E-07 8.8E-12 92.6 13.6 252 452-714 8-309 (558)
302 KOG1912 WD40 repeat protein [G 98.6 3E-06 6.5E-11 91.8 20.6 240 453-711 15-305 (1062)
303 KOG3914 WD repeat protein WDR4 98.6 9.7E-07 2.1E-11 89.1 14.3 148 463-621 74-231 (390)
304 KOG1832 HIV-1 Vpr-binding prot 98.6 4.1E-08 8.9E-13 106.9 4.8 195 451-666 1099-1300(1516)
305 KOG4714 Nucleoporin [Nuclear s 98.6 4.2E-07 9.2E-12 86.3 10.6 198 495-711 39-255 (319)
306 KOG4714 Nucleoporin [Nuclear s 98.5 1.1E-06 2.4E-11 83.5 12.2 157 387-564 88-255 (319)
307 COG5170 CDC55 Serine/threonine 98.5 1.2E-06 2.5E-11 85.1 12.5 216 492-712 26-311 (460)
308 PF15492 Nbas_N: Neuroblastoma 98.5 9.1E-05 2E-09 72.3 25.2 200 463-667 9-269 (282)
309 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00022 4.8E-09 68.3 27.1 140 400-563 23-165 (354)
310 PF06433 Me-amine-dh_H: Methyl 98.5 0.00011 2.3E-09 74.9 26.0 268 361-667 17-330 (342)
311 cd00216 PQQ_DH Dehydrogenases 98.5 0.00016 3.4E-09 80.7 29.8 290 400-720 61-434 (488)
312 KOG0882 Cyclophilin-related pe 98.4 1.4E-06 3E-11 88.9 11.0 215 490-714 7-235 (558)
313 cd00216 PQQ_DH Dehydrogenases 98.4 0.00058 1.3E-08 76.2 32.9 236 401-667 111-434 (488)
314 KOG1275 PAB-dependent poly(A) 98.4 5E-06 1.1E-10 91.8 15.6 179 463-655 147-340 (1118)
315 KOG1920 IkappaB kinase complex 98.4 4.9E-05 1.1E-09 87.0 23.9 237 345-616 74-325 (1265)
316 KOG2114 Vacuolar assembly/sort 98.4 2.5E-05 5.4E-10 86.2 20.5 205 499-719 30-252 (933)
317 KOG2695 WD40 repeat protein [G 98.4 6.5E-07 1.4E-11 88.3 7.4 158 459-623 217-386 (425)
318 KOG1645 RING-finger-containing 98.4 9.2E-05 2E-09 75.0 22.5 240 451-711 191-462 (463)
319 KOG2066 Vacuolar assembly/sort 98.4 1.6E-05 3.5E-10 87.0 17.5 187 494-710 41-233 (846)
320 PF00400 WD40: WD domain, G-be 98.3 1.4E-06 3.1E-11 59.7 6.2 39 523-561 1-39 (39)
321 KOG2066 Vacuolar assembly/sort 98.3 8.1E-06 1.8E-10 89.3 14.8 185 452-657 38-233 (846)
322 KOG1920 IkappaB kinase complex 98.3 0.00033 7.1E-09 80.5 26.2 197 452-660 67-325 (1265)
323 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0026 5.6E-08 71.3 33.2 293 400-720 69-500 (527)
324 PRK02888 nitrous-oxide reducta 98.2 0.00019 4.2E-09 78.7 22.6 187 463-658 141-405 (635)
325 PF11768 DUF3312: Protein of u 98.2 0.00054 1.2E-08 73.5 24.3 110 453-564 205-330 (545)
326 PF00400 WD40: WD domain, G-be 98.2 5.7E-06 1.2E-10 56.6 6.3 38 482-519 1-39 (39)
327 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0079 1.7E-07 67.4 34.0 245 401-667 121-500 (527)
328 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.002 4.4E-08 68.7 27.3 266 397-697 1-344 (353)
329 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.011 2.4E-07 57.0 30.5 307 352-712 24-353 (354)
330 PF14583 Pectate_lyase22: Olig 98.1 0.0069 1.5E-07 63.1 29.2 282 394-711 41-382 (386)
331 KOG2114 Vacuolar assembly/sort 98.1 0.00052 1.1E-08 76.2 21.9 203 455-666 27-252 (933)
332 KOG1645 RING-finger-containing 98.1 0.00017 3.6E-09 73.2 16.1 91 474-565 175-268 (463)
333 PF04053 Coatomer_WDAD: Coatom 98.0 0.00076 1.6E-08 73.1 22.4 220 388-657 32-262 (443)
334 KOG3621 WD40 repeat-containing 98.0 0.0011 2.3E-08 72.4 22.5 134 387-542 32-179 (726)
335 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0026 5.6E-08 67.9 25.9 243 343-601 46-344 (353)
336 PF06433 Me-amine-dh_H: Methyl 97.9 0.031 6.7E-07 57.3 29.9 229 473-719 68-329 (342)
337 PF04053 Coatomer_WDAD: Coatom 97.9 0.0026 5.6E-08 69.1 23.8 216 453-712 32-264 (443)
338 KOG3617 WD40 and TPR repeat-co 97.9 0.00019 4.2E-09 78.8 14.8 99 463-563 27-131 (1416)
339 PF08513 LisH: LisH; InterPro 97.9 1.2E-05 2.7E-10 49.3 3.4 27 143-169 1-27 (27)
340 PF11768 DUF3312: Protein of u 97.9 0.008 1.7E-07 64.8 26.1 113 586-712 207-331 (545)
341 PF08596 Lgl_C: Lethal giant l 97.9 0.0037 7.9E-08 67.0 23.9 270 390-700 3-326 (395)
342 PRK02888 nitrous-oxide reducta 97.9 0.0024 5.3E-08 70.3 22.5 92 605-711 296-405 (635)
343 KOG1008 Uncharacterized conser 97.9 4.6E-06 1E-10 88.8 1.5 203 494-711 58-276 (783)
344 KOG1008 Uncharacterized conser 97.9 1.2E-05 2.6E-10 85.7 4.5 249 452-710 55-335 (783)
345 smart00668 CTLH C-terminal to 97.8 6.3E-06 1.4E-10 62.2 1.1 45 1-46 13-57 (58)
346 KOG1275 PAB-dependent poly(A) 97.8 0.00038 8.1E-09 77.5 14.9 180 350-562 146-341 (1118)
347 PF04841 Vps16_N: Vps16, N-ter 97.8 0.023 5E-07 61.6 28.4 183 473-666 62-255 (410)
348 KOG3617 WD40 and TPR repeat-co 97.8 0.00081 1.8E-08 74.2 16.7 105 392-521 19-131 (1416)
349 PF06977 SdiA-regulated: SdiA- 97.8 0.019 4.2E-07 57.1 25.0 198 451-654 19-247 (248)
350 COG0823 TolB Periplasmic compo 97.8 0.003 6.4E-08 68.4 20.7 178 472-664 173-365 (425)
351 COG0823 TolB Periplasmic compo 97.8 0.0022 4.8E-08 69.3 19.8 178 453-647 192-389 (425)
352 COG3386 Gluconolactonase [Carb 97.7 0.016 3.6E-07 59.7 24.7 186 453-647 65-275 (307)
353 PF06977 SdiA-regulated: SdiA- 97.7 0.029 6.3E-07 55.8 25.3 204 381-610 16-247 (248)
354 COG3490 Uncharacterized protei 97.7 0.014 3E-07 57.2 21.3 218 473-710 92-348 (366)
355 smart00667 LisH Lissencephaly 97.7 5.1E-05 1.1E-09 50.0 3.6 32 141-172 2-33 (34)
356 KOG2659 LisH motif-containing 97.6 0.00015 3.2E-09 69.1 7.5 85 140-225 24-117 (228)
357 KOG3621 WD40 repeat-containing 97.6 0.00081 1.8E-08 73.2 13.7 159 493-659 34-199 (726)
358 PF04841 Vps16_N: Vps16, N-ter 97.6 0.071 1.5E-06 57.9 28.5 168 454-638 81-270 (410)
359 COG3391 Uncharacterized conser 97.6 0.17 3.8E-06 54.4 31.8 200 494-715 75-288 (381)
360 PRK13616 lipoprotein LpqB; Pro 97.6 0.013 2.9E-07 66.1 23.1 213 493-724 350-582 (591)
361 PF10607 CLTH: CTLH/CRA C-term 97.6 5.9E-05 1.3E-09 69.2 3.6 120 1-131 13-135 (145)
362 PF14583 Pectate_lyase22: Olig 97.5 0.17 3.7E-06 53.0 30.1 254 436-714 15-332 (386)
363 COG3391 Uncharacterized conser 97.5 0.047 1E-06 58.8 25.6 203 457-667 77-293 (381)
364 PF03178 CPSF_A: CPSF A subuni 97.5 0.025 5.3E-07 59.6 23.0 173 472-657 2-202 (321)
365 PF00780 CNH: CNH domain; Int 97.5 0.18 3.8E-06 51.7 29.0 239 349-623 5-265 (275)
366 KOG1897 Damage-specific DNA bi 97.4 0.36 7.7E-06 55.5 31.2 315 353-710 550-898 (1096)
367 PF00780 CNH: CNH domain; Int 97.4 0.14 3E-06 52.5 26.8 224 463-716 7-261 (275)
368 PF02897 Peptidase_S9_N: Proly 97.4 0.18 3.9E-06 55.2 29.2 242 390-662 125-409 (414)
369 PF08596 Lgl_C: Lethal giant l 97.3 0.063 1.4E-06 57.6 23.3 210 494-718 3-298 (395)
370 PF05096 Glu_cyclase_2: Glutam 97.3 0.094 2E-06 52.0 22.4 191 494-698 46-249 (264)
371 PF08553 VID27: VID27 cytoplas 97.3 0.0058 1.3E-07 70.0 15.8 132 471-612 503-646 (794)
372 PF03178 CPSF_A: CPSF A subuni 97.3 0.04 8.6E-07 58.0 21.3 179 513-710 2-202 (321)
373 smart00668 CTLH C-terminal to 97.2 0.00046 1E-08 51.9 4.3 53 174-227 4-56 (58)
374 COG3386 Gluconolactonase [Carb 97.2 0.2 4.2E-06 51.8 24.1 181 471-667 46-252 (307)
375 KOG2395 Protein involved in va 97.1 0.043 9.3E-07 58.3 18.2 140 463-613 345-500 (644)
376 PF08553 VID27: VID27 cytoplas 97.0 0.029 6.4E-07 64.4 18.2 141 508-656 499-646 (794)
377 PF02897 Peptidase_S9_N: Proly 97.0 0.59 1.3E-05 51.1 27.9 209 497-726 128-372 (414)
378 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.031 6.8E-07 47.3 13.4 98 391-517 2-110 (111)
379 KOG2395 Protein involved in va 97.0 0.02 4.3E-07 60.8 14.9 144 505-656 348-499 (644)
380 smart00320 WD40 WD40 repeats. 96.9 0.0027 5.8E-08 41.9 5.5 39 523-561 2-40 (40)
381 TIGR03074 PQQ_membr_DH membran 96.8 0.15 3.2E-06 59.5 21.9 232 463-719 194-486 (764)
382 KOG4640 Anaphase-promoting com 96.8 0.0066 1.4E-07 65.6 9.7 93 493-594 21-115 (665)
383 KOG1897 Damage-specific DNA bi 96.8 1.6 3.5E-05 50.4 31.3 283 387-713 529-859 (1096)
384 PRK13616 lipoprotein LpqB; Pro 96.7 0.12 2.6E-06 58.6 19.5 186 454-653 350-564 (591)
385 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.087 1.9E-06 44.7 13.8 97 456-558 2-109 (111)
386 PHA02713 hypothetical protein; 96.6 0.14 3E-06 58.1 19.7 194 503-723 303-544 (557)
387 COG3490 Uncharacterized protei 96.6 0.46 9.9E-06 47.0 19.9 212 496-718 71-318 (366)
388 PF05694 SBP56: 56kDa selenium 96.6 0.76 1.6E-05 48.8 22.8 254 379-646 57-392 (461)
389 KOG4640 Anaphase-promoting com 96.6 0.011 2.5E-07 63.8 9.8 80 627-717 20-99 (665)
390 smart00320 WD40 WD40 repeats. 96.5 0.0076 1.6E-07 39.6 5.6 38 482-519 2-40 (40)
391 KOG4499 Ca2+-binding protein R 96.5 0.51 1.1E-05 45.3 19.1 148 494-645 110-272 (310)
392 KOG4441 Proteins containing BT 96.4 0.42 9.1E-06 54.2 21.6 223 472-721 301-555 (571)
393 KOG2659 LisH motif-containing 96.4 0.0055 1.2E-07 58.6 5.6 120 2-133 77-200 (228)
394 KOG4441 Proteins containing BT 96.3 0.4 8.6E-06 54.4 20.7 192 456-660 325-549 (571)
395 PF05096 Glu_cyclase_2: Glutam 96.3 1.4 3E-05 43.9 24.6 184 455-646 46-249 (264)
396 PHA02713 hypothetical protein; 96.3 0.36 7.8E-06 54.8 20.2 184 463-661 304-537 (557)
397 PF12894 Apc4_WD40: Anaphase-p 96.2 0.015 3.2E-07 41.2 5.5 34 682-717 14-47 (47)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 2.7 6E-05 45.2 23.9 81 585-666 308-407 (415)
399 KOG2444 WD40 repeat protein [G 96.0 0.013 2.7E-07 55.9 5.5 102 463-564 70-178 (238)
400 KOG2444 WD40 repeat protein [G 96.0 0.017 3.6E-07 55.1 6.3 71 596-666 70-141 (238)
401 KOG2079 Vacuolar assembly/sort 96.0 0.14 3.1E-06 59.0 14.6 107 454-562 90-202 (1206)
402 PF14870 PSII_BNR: Photosynthe 95.9 2.6 5.6E-05 43.4 25.2 159 489-654 141-301 (302)
403 PF10168 Nup88: Nuclear pore c 95.9 1.6 3.5E-05 50.6 23.0 71 494-564 86-180 (717)
404 TIGR03074 PQQ_membr_DH membran 95.9 1.9 4E-05 50.5 23.7 186 463-665 260-485 (764)
405 COG3204 Uncharacterized protei 95.9 2.3 4.9E-05 42.7 21.4 177 489-666 82-271 (316)
406 KOG2079 Vacuolar assembly/sort 95.9 0.038 8.2E-07 63.5 9.5 106 596-712 99-205 (1206)
407 COG3204 Uncharacterized protei 95.8 1.2 2.5E-05 44.6 18.4 170 529-710 81-263 (316)
408 PF14870 PSII_BNR: Photosynthe 95.7 3.1 6.6E-05 42.9 33.6 278 388-707 16-301 (302)
409 PF05694 SBP56: 56kDa selenium 95.6 1.4 3.1E-05 46.8 19.3 190 463-659 87-344 (461)
410 PF15390 DUF4613: Domain of un 95.6 0.58 1.3E-05 51.0 16.7 146 453-613 19-186 (671)
411 PF12894 Apc4_WD40: Anaphase-p 95.4 0.037 8.1E-07 39.1 4.9 34 627-661 11-44 (47)
412 COG1520 FOG: WD40-like repeat 95.2 2.8 6E-05 45.1 21.2 205 503-721 68-279 (370)
413 PRK13684 Ycf48-like protein; P 95.2 5 0.00011 42.4 29.9 157 533-710 172-331 (334)
414 PF14727 PHTB1_N: PTHB1 N-term 95.1 6 0.00013 42.7 31.6 278 400-716 37-366 (418)
415 PF10647 Gmad1: Lipoprotein Lp 94.9 1.8 4E-05 43.6 17.6 151 535-702 25-187 (253)
416 PF10647 Gmad1: Lipoprotein Lp 94.9 4.8 0.0001 40.5 23.8 146 494-649 25-187 (253)
417 PRK10115 protease 2; Provision 94.8 11 0.00024 44.1 31.5 192 455-657 128-344 (686)
418 PF15390 DUF4613: Domain of un 94.8 1.7 3.6E-05 47.6 17.0 152 494-658 21-187 (671)
419 PF12234 Rav1p_C: RAVE protein 94.7 1 2.2E-05 50.8 16.1 115 586-711 31-157 (631)
420 PF12234 Rav1p_C: RAVE protein 94.7 0.73 1.6E-05 51.9 15.0 113 535-657 31-156 (631)
421 COG4257 Vgb Streptogramin lyas 94.7 4.7 0.0001 40.0 18.4 204 495-718 64-268 (353)
422 KOG2377 Uncharacterized conser 94.7 3.2 6.8E-05 43.9 18.1 155 347-524 29-188 (657)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 94.6 8 0.00017 41.7 29.5 82 534-623 308-408 (415)
424 PF10168 Nup88: Nuclear pore c 94.5 1.4 2.9E-05 51.2 16.9 90 627-720 84-189 (717)
425 PHA03098 kelch-like protein; P 94.4 2.3 4.9E-05 48.3 18.9 186 463-660 295-514 (534)
426 KOG2280 Vacuolar assembly/sort 94.1 7.6 0.00016 43.9 20.7 170 455-637 85-269 (829)
427 TIGR02604 Piru_Ver_Nterm putat 94.1 1.6 3.4E-05 46.9 15.7 149 534-701 14-204 (367)
428 PHA03098 kelch-like protein; P 93.6 3.1 6.6E-05 47.3 17.9 101 463-565 390-513 (534)
429 KOG3630 Nuclear pore complex, 93.6 0.98 2.1E-05 52.8 13.2 153 534-698 101-261 (1405)
430 KOG4499 Ca2+-binding protein R 93.1 8.8 0.00019 37.2 20.5 196 471-689 36-263 (310)
431 KOG4460 Nuclear pore complex, 93.1 1.9 4.1E-05 46.3 13.3 98 628-729 104-218 (741)
432 PRK10115 protease 2; Provision 92.9 24 0.00051 41.4 31.8 239 389-660 127-397 (686)
433 PHA02790 Kelch-like protein; P 92.9 6 0.00013 44.1 18.2 183 463-659 272-472 (480)
434 KOG0396 Uncharacterized conser 92.6 0.3 6.5E-06 49.9 6.6 86 140-226 113-206 (389)
435 KOG2280 Vacuolar assembly/sort 92.6 19 0.00041 40.9 20.6 33 533-565 216-248 (829)
436 COG5167 VID27 Protein involved 92.3 2.1 4.6E-05 45.8 12.5 138 464-613 480-632 (776)
437 PF13449 Phytase-like: Esteras 92.3 13 0.00027 39.2 18.8 174 534-711 20-250 (326)
438 KOG3630 Nuclear pore complex, 92.2 1.8 3.9E-05 50.7 12.8 124 471-601 123-260 (1405)
439 PLN00033 photosystem II stabil 92.0 20 0.00043 38.7 20.0 151 496-654 242-396 (398)
440 TIGR02604 Piru_Ver_Nterm putat 92.0 6.4 0.00014 42.2 16.6 150 494-648 15-204 (367)
441 COG3823 Glutamine cyclotransfe 92.0 8.9 0.00019 36.5 14.8 180 458-645 50-247 (262)
442 PHA02790 Kelch-like protein; P 91.9 10 0.00022 42.3 18.5 97 463-564 363-471 (480)
443 PF05935 Arylsulfotrans: Aryls 91.8 8.8 0.00019 42.7 17.8 129 590-721 153-312 (477)
444 KOG3616 Selective LIM binding 91.3 4.1 8.9E-05 45.6 13.6 163 347-524 22-196 (1636)
445 PF07569 Hira: TUP1-like enhan 91.2 1.1 2.4E-05 43.9 8.8 75 541-618 18-100 (219)
446 COG1520 FOG: WD40-like repeat 91.1 24 0.00053 37.7 26.0 198 463-667 68-278 (370)
447 PF05935 Arylsulfotrans: Aryls 90.7 24 0.00052 39.3 19.8 153 505-668 117-312 (477)
448 PF06588 Muskelin_N: Muskelin 90.7 0.22 4.8E-06 46.5 3.1 134 26-174 43-197 (199)
449 KOG2247 WD40 repeat-containing 90.3 0.048 1E-06 57.5 -1.7 239 388-662 34-285 (615)
450 PF03022 MRJP: Major royal jel 90.2 24 0.00052 36.2 18.2 168 473-645 35-253 (287)
451 TIGR03118 PEPCTERM_chp_1 conse 90.0 24 0.00052 35.9 24.9 205 456-667 25-289 (336)
452 COG5290 IkappaB kinase complex 89.7 8 0.00017 43.8 14.2 131 497-638 206-347 (1243)
453 PF08728 CRT10: CRT10; InterP 89.0 20 0.00043 41.2 17.3 114 586-709 102-245 (717)
454 PF07995 GSDH: Glucose / Sorbo 89.0 9 0.0002 40.4 14.2 112 586-703 3-136 (331)
455 PRK13684 Ycf48-like protein; P 88.9 34 0.00073 36.1 30.1 154 492-655 172-329 (334)
456 KOG2247 WD40 repeat-containing 88.9 0.058 1.2E-06 56.9 -2.4 145 537-706 38-184 (615)
457 KOG4460 Nuclear pore complex, 88.9 39 0.00085 36.8 19.5 72 494-565 105-200 (741)
458 PLN00033 photosystem II stabil 88.9 38 0.00082 36.6 33.2 151 536-707 241-396 (398)
459 PF14781 BBS2_N: Ciliary BBSom 88.8 16 0.00035 32.3 13.7 110 499-620 5-132 (136)
460 PF14761 HPS3_N: Hermansky-Pud 88.8 23 0.00051 34.1 16.2 150 546-710 29-214 (215)
461 PF14781 BBS2_N: Ciliary BBSom 88.2 18 0.00038 32.0 13.1 117 540-665 5-133 (136)
462 PF14761 HPS3_N: Hermansky-Pud 88.0 16 0.00035 35.2 13.5 119 589-712 22-165 (215)
463 TIGR03606 non_repeat_PQQ dehyd 87.7 20 0.00043 39.3 15.7 113 533-648 29-166 (454)
464 COG3823 Glutamine cyclotransfe 87.6 21 0.00044 34.2 13.5 179 505-698 58-247 (262)
465 KOG1916 Nuclear protein, conta 87.5 0.47 1E-05 53.9 3.3 123 348-485 192-328 (1283)
466 PF08728 CRT10: CRT10; InterP 87.2 21 0.00046 41.0 16.0 143 463-612 49-245 (717)
467 PF07995 GSDH: Glucose / Sorbo 87.1 43 0.00093 35.2 27.2 232 456-705 4-330 (331)
468 KOG1900 Nuclear pore complex, 86.3 32 0.0007 41.7 17.3 145 509-658 95-273 (1311)
469 KOG1916 Nuclear protein, conta 86.1 0.87 1.9E-05 51.9 4.4 162 451-618 130-328 (1283)
470 PF07569 Hira: TUP1-like enhan 85.9 4.1 9E-05 39.9 8.7 75 635-712 18-97 (219)
471 TIGR03118 PEPCTERM_chp_1 conse 85.1 48 0.001 33.8 21.3 209 494-713 24-282 (336)
472 PF10313 DUF2415: Uncharacteri 84.5 3 6.4E-05 28.8 4.8 31 534-564 1-34 (43)
473 PF10214 Rrn6: RNA polymerase 84.5 96 0.0021 36.9 29.0 167 490-659 77-278 (765)
474 COG5276 Uncharacterized conser 83.8 52 0.0011 33.3 27.3 185 350-564 95-286 (370)
475 TIGR03606 non_repeat_PQQ dehyd 83.6 34 0.00074 37.5 15.1 55 585-639 30-90 (454)
476 PF13449 Phytase-like: Esteras 83.5 62 0.0013 33.9 23.1 164 493-657 20-249 (326)
477 COG4590 ABC-type uncharacteriz 83.4 7.5 0.00016 41.2 9.4 293 351-661 80-390 (733)
478 COG5167 VID27 Protein involved 83.2 23 0.0005 38.3 13.0 142 505-657 482-632 (776)
479 TIGR03032 conserved hypothetic 83.0 60 0.0013 33.4 22.8 83 544-638 212-315 (335)
480 PF10313 DUF2415: Uncharacteri 82.6 6 0.00013 27.3 5.6 31 628-658 1-34 (43)
481 KOG2817 Predicted E3 ubiquitin 82.5 6.3 0.00014 41.1 8.5 89 136-225 110-208 (394)
482 KOG1896 mRNA cleavage and poly 82.4 80 0.0017 38.2 17.9 113 451-563 1095-1213(1366)
483 smart00036 CNH Domain found in 81.8 69 0.0015 33.2 27.4 232 399-666 12-279 (302)
484 PF03022 MRJP: Major royal jel 81.7 49 0.0011 34.0 14.9 149 556-711 35-216 (287)
485 PF07250 Glyoxal_oxid_N: Glyox 80.2 23 0.0005 35.2 11.4 145 515-666 48-206 (243)
486 TIGR02276 beta_rpt_yvtn 40-res 80.1 6.9 0.00015 26.4 5.7 30 594-623 1-32 (42)
487 PF12657 TFIIIC_delta: Transcr 79.4 17 0.00037 34.1 9.9 37 682-718 88-130 (173)
488 PF08801 Nucleoporin_N: Nup133 79.3 53 0.0012 35.9 15.3 32 628-659 190-221 (422)
489 PF09398 FOP_dimer: FOP N term 79.2 3.7 7.9E-05 32.8 4.4 46 121-173 4-49 (81)
490 PF02333 Phytase: Phytase; In 78.6 98 0.0021 33.0 25.8 193 398-614 66-291 (381)
491 COG5276 Uncharacterized conser 78.3 82 0.0018 32.0 26.3 151 452-614 85-242 (370)
492 COG3292 Predicted periplasmic 77.5 1.2E+02 0.0027 33.6 18.1 272 388-706 164-443 (671)
493 PF14727 PHTB1_N: PTHB1 N-term 77.3 1.1E+02 0.0025 33.1 30.5 153 350-520 36-203 (418)
494 KOG3060 Uncharacterized conser 76.7 1.9 4.2E-05 42.2 2.5 73 2-81 99-172 (289)
495 KOG0396 Uncharacterized conser 76.4 2.2 4.9E-05 43.8 3.0 71 2-74 165-236 (389)
496 KOG1900 Nuclear pore complex, 76.2 2E+02 0.0044 35.4 19.1 75 490-564 176-273 (1311)
497 PF12657 TFIIIC_delta: Transcr 76.2 14 0.00029 34.8 8.2 31 534-564 86-122 (173)
498 KOG3522 Predicted guanine nucl 75.4 26 0.00056 40.4 11.1 148 352-523 548-699 (925)
499 smart00564 PQQ beta-propeller 75.3 5.7 0.00012 25.2 3.8 26 693-718 7-32 (33)
500 PF07250 Glyoxal_oxid_N: Glyox 75.1 33 0.00072 34.1 10.8 145 474-622 48-206 (243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-59 Score=454.35 Aligned_cols=458 Identities=16% Similarity=0.235 Sum_probs=373.8
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc---HHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHHHHHHH
Q 004683 140 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQ 216 (737)
Q Consensus 140 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 216 (737)
-.+.|++|+++|+|.++||.+|+..||.|+|+... ...|.++|+.|+|+.++..+..+...++.......|+ +.+|
T Consensus 15 ikk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL-v~kQ 93 (519)
T KOG0293|consen 15 IKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL-VNKQ 93 (519)
T ss_pred eccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH-HHHH
Confidence 46789999999999999999999999999999883 8999999999999999999999877777788889999 9999
Q ss_pred HHHHHHhhc-----------ccCcchHH-HhhhHHHHHHHh---------------hccCcccccccCC---CCC--ChH
Q 004683 217 KYLEAVDRQ-----------QKLPSDFA-ERAHLFDDFKVL---------------VERNPMLQDKLKF---PSM--DKS 264 (737)
Q Consensus 217 ~~lEll~~~-----------~~~p~~~~-~~~~~l~~~~~~---------------~~~~~~l~~~l~~---~~~--~~~ 264 (737)
+|||++..+ +..+++.. ++.|.|.+.... ...|..|+++++. |.+ |+.
T Consensus 94 ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~r 173 (519)
T KOG0293|consen 94 IFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKR 173 (519)
T ss_pred HHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChH
Confidence 999999874 23345555 676777765533 2235556666644 433 999
Q ss_pred HHHHHHHHhhccccceeccccCCCCCccccccCCccccccccccccccCCCCCCCcceeeccCCCCCcceeeeCCCCccc
Q 004683 265 RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRE 344 (737)
Q Consensus 265 rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~gh~~~~s~l~~~~~~~~~ 344 (737)
||++|++||+.+|+..|. +||..+. ++ ++.++.|...
T Consensus 174 RLehLl~qAv~~Q~d~cv--yhnslds-vs----------------------------------------ll~Dh~c~~~ 210 (519)
T KOG0293|consen 174 RLEHLLEQAVKYQRDSCV--YHNSLDS-VS----------------------------------------LLSDHFCGRL 210 (519)
T ss_pred HHHHHHHHHHHHHHhHhH--Hhcccch-hh----------------------------------------hhhhcccCcc
Confidence 999999999999998887 8875221 11 4445544443
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..| ....++ +.. |+++||.+.||++|+||||+|.|.+..||.+..
T Consensus 211 --qip-------------------------~qt~qi-l~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~----- 255 (519)
T KOG0293|consen 211 --QIP-------------------------SQTWQI-LQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY----- 255 (519)
T ss_pred --cCC-------------------------chhhhh-Hhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEec-----
Confidence 222 111122 445 999999999999999999999999999998652
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFIL 500 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~ 500 (737)
|.. -++.+++. +|..+|..+.|| ++++++|+ +..+.+||+.+|.....+. ++...+.+++|
T Consensus 256 ------------d~~-~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 256 ------------DVH-FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred ------------Ccc-eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 222 22333333 799999999999 88999999 8999999999999988886 55678999999
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC-CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~-~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
.||| .+++|+.|+++..||++ |.....+++- .-.|.+++.++||+++++.+.|..|++++..+... .. +..
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-----r~-lis 393 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-----RG-LIS 393 (519)
T ss_pred ccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-----hc-ccc
Confidence 9999 99999999999999987 4556666653 34689999999999999999999999999987321 11 222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEc
Q 004683 579 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~ 656 (737)
.+ .+|++.++|.+|+++++. .+..|++||++....++.+.++.....+..-||.- +..++++||+|+.||||+.
T Consensus 394 e~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 394 EE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 22 589999999999999996 89999999999989999998877778888899975 6689999999999999999
Q ss_pred CCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 657 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.+|+++..+.+| ...++ +|+|+|.+..++|+||+||+||||.+...
T Consensus 470 ~sgkll~~LsGH--------s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 470 ISGKLLAVLSGH--------SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCceeEeecCC--------cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999754 44455 99999999999999999999999988643
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-58 Score=438.20 Aligned_cols=459 Identities=21% Similarity=0.337 Sum_probs=367.5
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc----HHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHHHHHHH
Q 004683 141 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQ 216 (737)
Q Consensus 141 ~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 216 (737)
.+.+|||||.|||+|+.+.++.++||+|.++++| ++.|.+.|.+|+||.+++.+.++ .++..+++++|||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 3558999999999999999999999999999997 89999999999999999999999 7888999999999
Q ss_pred HHHHHHhhc-------------------ccCcchHH-----------HhhhHHHHHHHhhccCccccccc--CCCCCChH
Q 004683 217 KYLEAVDRQ-------------------QKLPSDFA-----------ERAHLFDDFKVLVERNPMLQDKL--KFPSMDKS 264 (737)
Q Consensus 217 ~~lEll~~~-------------------~~~p~~~~-----------~~~~~l~~~~~~~~~~~~l~~~l--~~~~~~~~ 264 (737)
..||++|.+ +.+|++|. ++.+.+.+. ..+++|..+.+.+ ++..+||+
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~ds-sKEkrRa~IAQ~ls~EV~VVppS 158 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDS-SKEKRRAVIAQALSGEVHVVPPS 158 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcc-hHHHHHHHHHHHhcCceEEcChH
Confidence 999999984 45677664 233333332 2244455556666 45777999
Q ss_pred HHHHHHHHhhccccceeccccCCCCCccccccCCccccccccccccccCCCCCCCcceeeccCCCCCcceeeeCCCCccc
Q 004683 265 RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRE 344 (737)
Q Consensus 265 rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~gh~~~~s~l~~~~~~~~~ 344 (737)
||+.|+.||++||. ..+++|+.. .+|+ || |.+-.. ...
T Consensus 159 RLlaLlGQaLKWQq--HQGLLPPGt-------~iDL---FR-------------GkAA~K-----------------~~~ 196 (508)
T KOG0275|consen 159 RLLALLGQALKWQQ--HQGLLPPGT-------TIDL---FR-------------GKAAMK-----------------DQE 196 (508)
T ss_pred HHHHHHHHHhhhHh--hcCCCCCCc-------eeee---cc-------------chhhhh-----------------hhH
Confidence 99999999999999 888888874 2222 33 111000 001
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
.+..| +...+.+.+. ..+.+.|..|||||+||++||.||.|.+||..+++
T Consensus 197 Ee~~P------------------------t~l~r~IKFg---~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK--- 246 (508)
T KOG0275|consen 197 EERYP------------------------TQLARSIKFG---QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK--- 246 (508)
T ss_pred hhhch------------------------HHhhhheecc---cccchhheeeCCCCceEeeccccceeeeehhccch---
Confidence 11122 1112222232 46778999999999999999999999999988543
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFIL 500 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~ 500 (737)
....+. |+.....++ +..+|.|+.|+ ...+++|+ ||.|++|.+.+|.+++.|. +|..+|+|+.|
T Consensus 247 --lrKDLk---YQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F 314 (508)
T KOG0275|consen 247 --LRKDLK---YQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF 314 (508)
T ss_pred --hhhhhh---hhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence 333322 333333332 78999999999 77899999 9999999999999999998 99999999999
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
+.|+ .+++++.|.++++..+.+|++++.++||.+.|+...|.++|..+++++.||+|++|+..+.++ +.++...
T Consensus 315 SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~ 389 (508)
T KOG0275|consen 315 SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPL 389 (508)
T ss_pred ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCC
Confidence 9999 999999999999999999999999999999999999999999999999999999999999554 3333332
Q ss_pred CCCCCCCeEEEEEecCC-CEEEEE-ecCcEEEEeCCCCceeEEecCCC-CCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 580 LVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp~g-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
... .+|.++..-|.. ..+++| ..++|+|.++ .|+.++++.... ..+...+.+.||.|.|+++.++|+.++.|.+
T Consensus 390 ~~d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 390 GTD--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCc--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 222 688888888865 566665 7889999999 588888886532 3567888899999999999999999999999
Q ss_pred CCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 657 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
.+|.+...+..| . -.++.++.|| ..+.+|+-++||.+++|.+
T Consensus 467 ~sG~LE~tl~Vh--------E--kdvIGl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 467 LSGKLERTLPVH--------E--KDVIGLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCceeeeeecc--------c--ccccccccCc-ccchhhhhcccchhhhcCC
Confidence 999999888754 2 2245899999 7899999999999999963
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-50 Score=387.16 Aligned_cols=314 Identities=20% Similarity=0.246 Sum_probs=275.1
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.|+|+|..+|+|+.|.++|+||+.+ .+... +..| |...|.|++|||||+.||+|+.||+|++||..+++.
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~T----eTp~~-t~Kg--H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-- 191 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDT----ETPLF-TCKG--HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-- 191 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCC----CCcce-eecC--CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--
Confidence 44899999999999999999999985 33332 2556 999999999999999999999999999887664333
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-------CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 496 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~ 496 (737)
+-..+ .+|...|++++|. .++||+++ ||.|+|||+..+.++..+.+|...|+
T Consensus 192 -------------------~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 192 -------------------IGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred -------------------ccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 21111 1799999999998 56899999 99999999999999999999999999
Q ss_pred EEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe-----------CCCC-------------------
Q 004683 497 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----------LSLN------------------- 546 (737)
Q Consensus 497 ~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s-----------p~g~------------------- 546 (737)
|+.|--+|++++|+.|++|++|+...|.+.+.+++|...|+.++.+ |.++
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 9999888899999999999999999999999999999999999887 2233
Q ss_pred ------EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeE
Q 004683 547 ------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 547 ------~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~ 619 (737)
.+++|+.|.++.+|+.... .+++. ...+|. .-|+.+.||||++++++ +.|.+|++||.++|+.+.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~----kkpi~-rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKS----KKPIT-RMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred hccCcceeEEecCCceEEEeccccc----ccchh-hhhchh---hheeeEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 5999999999999997652 24444 345676 78999999999999999 699999999999999999
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
+|.+ |-..|+.++||.|.++|++||.|.+++||++++.++...+++| ...|+ ++.|+| ||..+++|+
T Consensus 404 sfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--------~DEVf--~vDwsp-DG~rV~sgg 470 (480)
T KOG0271|consen 404 SFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--------ADEVF--AVDWSP-DGQRVASGG 470 (480)
T ss_pred hhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC--------CceEE--EEEecC-CCceeecCC
Confidence 9976 7999999999999999999999999999999999988888744 45576 999999 899999999
Q ss_pred CCCcEEEEe
Q 004683 700 TNGRVHVIE 708 (737)
Q Consensus 700 ~Dg~V~iWd 708 (737)
.|..+++|.
T Consensus 471 kdkv~~lw~ 479 (480)
T KOG0271|consen 471 KDKVLRLWR 479 (480)
T ss_pred CceEEEeec
Confidence 999999995
No 4
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-46 Score=363.06 Aligned_cols=444 Identities=15% Similarity=0.181 Sum_probs=335.6
Q ss_pred CCCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh-ccccc
Q 004683 1 MNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL-ALKDL 79 (737)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 79 (737)
+.|+|+.+++-|..-. .+|.+.-.+..|++.||+|||+|..+....|+-+|||....+. .|.+.|+|++.-| --+|+
T Consensus 61 lqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~ 138 (519)
T KOG0293|consen 61 LQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQ 138 (519)
T ss_pred HcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccc
Confidence 5799999999776433 4455555689999999999999999999999999999888877 7888888988766 44444
Q ss_pred cccccc--cCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhh
Q 004683 80 RENEQL--SGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEE 157 (737)
Q Consensus 80 ~~~~~~--~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G 157 (737)
--++.- +++ .-.|.+++++|+|+|++|.|+ |++||.-|++
T Consensus 139 ~~ne~~~~~~~---~n~R~~ll~elskyi~p~ill---------P~rRLehLl~-------------------------- 180 (519)
T KOG0293|consen 139 FSNEENTTAQL---NNERDKLLDELSKYIPPNILL---------PKRRLEHLLE-------------------------- 180 (519)
T ss_pred cccccchhhhh---chhHHHHHHHHHhhCCHhhcC---------ChHHHHHHHH--------------------------
Confidence 444422 334 468999999999999999999 9999999999
Q ss_pred hHHHHHHHHhhccccccHHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHhhcccCcchHHHhhh
Q 004683 158 FKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAH 237 (737)
Q Consensus 158 ~~~s~~~L~~Es~i~~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~p~~~~~~~~ 237 (737)
.|...|..++++.| .+++++.+.|+.+....+.
T Consensus 181 ---qAv~~Q~d~cvyhn------------------sldsvsll~Dh~c~~~qip-------------------------- 213 (519)
T KOG0293|consen 181 ---QAVKYQRDSCVYHN------------------SLDSVSLLSDHFCGRLQIP-------------------------- 213 (519)
T ss_pred ---HHHHHHHhHhHHhc------------------ccchhhhhhhcccCcccCC--------------------------
Confidence 68889999988554 1222322223222222222
Q ss_pred HHHHHHHhhccCcccccccCCCCCChHHHHHHHHHhhccccceeccccCCCCCccccccCCccccccccccccccCCCCC
Q 004683 238 LFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQ 317 (737)
Q Consensus 238 ~l~~~~~~~~~~~~l~~~l~~~~~~~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~ 317 (737)
...||. ++. ..+-.-+
T Consensus 214 -----------------------------------~qt~qi------l~~---------htdEVWf-------------- 229 (519)
T KOG0293|consen 214 -----------------------------------SQTWQI------LQD---------HTDEVWF-------------- 229 (519)
T ss_pred -----------------------------------chhhhh------Hhh---------CCCcEEE--------------
Confidence 111111 000 0011111
Q ss_pred CCcceeeccCCCCCcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEe
Q 004683 318 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 397 (737)
Q Consensus 318 ~~~~l~~~~gh~~~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fs 397 (737)
..||++|+++|++++|.+..||.+.... ..-...++.| |..+|..+.||
T Consensus 230 ---------------------------l~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvg--h~~~V~yi~wS 278 (519)
T KOG0293|consen 230 ---------------------------LQFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVG--HSQPVSYIMWS 278 (519)
T ss_pred ---------------------------EEEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeec--ccCceEEEEEC
Confidence 2299999999999999999999987632 1222334677 99999999999
Q ss_pred cCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeE
Q 004683 398 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 474 (737)
Q Consensus 398 pdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i 474 (737)
||.+||++|+.|..+.+||+.+ |.+...+.. ++...+.+++|. |..+++|+ |+++
T Consensus 279 PDdryLlaCg~~e~~~lwDv~t---------------------gd~~~~y~~-~~~~S~~sc~W~pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDT---------------------GDLRHLYPS-GLGFSVSSCAWCPDGFRFVTGSPDRTI 336 (519)
T ss_pred CCCCeEEecCchHheeeccCCc---------------------chhhhhccc-CcCCCcceeEEccCCceeEecCCCCcE
Confidence 9999999999999988777664 333333332 366889999999 88899999 9999
Q ss_pred EEEECCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe
Q 004683 475 SIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 475 ~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s 552 (737)
..||++ |.....+++.. ..|.+++.++|| .+++.+.|..|++++.++...+.... ...+|++++.+.+|+++++.-
T Consensus 337 ~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 337 IMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc
Confidence 999987 55666666543 568999999999 88888899999999998776665454 457899999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeE
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 631 (737)
.+..+++||+... ..++ -..||..+..-|.++--.-+..++++| .|+.|+||+..+|+++.++.+ |...|+
T Consensus 415 ~~qei~LWDl~e~-----~lv~-kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vN 486 (519)
T KOG0293|consen 415 QDQEIHLWDLEEN-----KLVR-KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVN 486 (519)
T ss_pred ccCeeEEeecchh-----hHHH-HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--Ccceee
Confidence 9999999999963 2233 234554322334443333445778884 899999999999999999976 799999
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEEcCC
Q 004683 632 YATYSC-DGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 632 ~~~~sp-~~~~l~sgs~dg~I~vwd~~~ 658 (737)
+++|+| +-.++|++|+||+|+||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999 567889999999999998764
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-44 Score=355.05 Aligned_cols=317 Identities=15% Similarity=0.181 Sum_probs=264.7
Q ss_pred cCCCCC-EEEEEecCCeEEEeecCccCCCC-------ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeecc
Q 004683 347 SLPDAD-SAVCAKSLEKSVNLKLQLINEPS-------ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 418 (737)
Q Consensus 347 ~spdg~-~la~~s~dg~v~iW~~~~~~~~~-------~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~ 418 (737)
|.|-.. .+++++.|.+.++|++....... .|.............|++++|+.+|..||+|+.||.++||+..
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~ 265 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD 265 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC
Confidence 667666 88999999999999987411001 1111101111134689999999999999999999999999965
Q ss_pred CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe
Q 004683 419 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 495 (737)
Q Consensus 419 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v 495 (737)
. .....+ ..|.++|.++.|+ |+||++++ |+++.+||..+|...+.+.-|..+.
T Consensus 266 G------~l~~tl------------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 266 G------NLISTL------------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred c------hhhhhh------------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 3 222222 1699999999999 99999999 9999999999999999999998887
Q ss_pred EEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004683 496 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 496 ~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
..+.|-.+..+++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.|.+|+++|.|+++++|..... ...+
T Consensus 322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~- 395 (524)
T KOG0273|consen 322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVH- 395 (524)
T ss_pred cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchh-
Confidence 7889977669999999999999999999999999999999999999999999999999999999998763 3333
Q ss_pred cccCCCCCCCCeEEEEEecCC---------CEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g---------~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
-...|. ..|..+.|+|+| ..+++ +.|++|++||+..+.++.++.. |..+|++++|||+|+++|+|
T Consensus 396 ~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--H~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 396 DLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--HQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred hhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--CCCceEEEEecCCCcEEEec
Confidence 233555 689999999975 34565 6999999999999999999965 79999999999999999999
Q ss_pred ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 646 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 646 s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+.||.|.+|+.+++++.+.+.. .+. +..++|+. +|+.|..+-.||.+.+-|+.
T Consensus 471 s~dg~V~iws~~~~~l~~s~~~---------~~~--Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKSYQG---------TGG--IFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCeeEeccccchheeEeecC---------CCe--EEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 9999999999999999998853 233 44999999 78999999999999998874
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-41 Score=329.69 Aligned_cols=287 Identities=18% Similarity=0.254 Sum_probs=246.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
++| |.++|.|++|+|+|.+|++|+.|.++++||+.+.. ...+.. +|...|.|++|
T Consensus 111 ~~G--H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---------------------p~~t~K--gH~~WVlcvaw 165 (480)
T KOG0271|consen 111 IAG--HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---------------------PLFTCK--GHKNWVLCVAW 165 (480)
T ss_pred cCC--CCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---------------------cceeec--CCccEEEEEEE
Confidence 777 99999999999999999999999999999876432 122222 79999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEE-EEecCCCCCeEEEEEcC-----CC-eEEEEECCCeEEEEecCCCcEEEEEcC
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLP-----QD-LFAFGFDDSSILVHCPCTKKTKAKLKG 531 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~-----~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~ 531 (737)
+ |+.||+|+ ||+|++||..+|+++ +.+.+|...|++++|.| .. ++|+++.||.|+|||+..++++..+.+
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 9 99999999 999999999998765 57889999999999976 44 899999999999999999999999999
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe-----------cCCC---
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-----------PDQI--- 597 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----------p~g~--- 597 (737)
|+.+|+|+.|--+| ++++||.|++|++|+...| ...+ ...+|. ..|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-----~~~r-~lkGHa---hwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-----KLCR-ELKGHA---HWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccch-----hHHH-hhcccc---hheeeeeccchhhhhccccccccccCC
Confidence 99999999998766 8999999999999999874 3333 455676 688888776 3333
Q ss_pred ----------------------EEEEE-ecCcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 598 ----------------------HLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 598 ----------------------~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
.++++ .|.++.+|+-.. .+++....+ |..-|+.+.||||++++|++|.|..|++
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG--HQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc--hhhheeeEEECCCccEEEEeecccceee
Confidence 37774 778999999754 447767655 7899999999999999999999999999
Q ss_pred EEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
|+-.+|+.+..+.+| -+.|| .++|+. |..+|++|+.|.++++|++.+.+...
T Consensus 394 W~g~tGk~lasfRGH--------v~~VY--qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGH--------VAAVY--QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred eeCCCcchhhhhhhc--------cceeE--EEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 999999999998754 44577 999999 89999999999999999999876443
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=328.81 Aligned_cols=268 Identities=19% Similarity=0.164 Sum_probs=241.0
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEeeccCCcccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd--g~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
|++|++.+||||.+|.+++|+... ....+ +|.| |++.|.++.|+|. +..+|||+.||++++|++.+.
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~----~~~~~-~l~g--H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---- 251 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQ----CNLLQ-TLRG--HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---- 251 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCC----cceeE-EEec--cccceeeEEEccCCCccceeeeccCCceeeeccCCC----
Confidence 889999999999999999999885 33333 3777 9999999999997 668999999999999987742
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
..+..+. +|...|..++|+ |++|+|++ |.+-++||+.++..+....||...|.+++|.
T Consensus 252 -----------------~~l~~l~--gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 252 -----------------TPLQDLE--GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred -----------------cchhhhh--cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 2222222 799999999999 99999999 9999999999999998889999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
||| .+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..+|+||.|++++|||++. ...+.+++ +|
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-----r~~ly~ip-AH 386 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-----RSELYTIP-AH 386 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-----cccceecc-cc
Confidence 999 999999999999999999999999999999999999999999999999999999999998 34456444 55
Q ss_pred CCCCCCeEEEEEec-CCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 581 VPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 581 ~~~~~~v~~l~~sp-~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
. +-|+.++|+| .|.+|++ +.|++++||...+..+++++.+ |.+.|.++.+++|++++++++.|.++++|.
T Consensus 387 ~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 387 S---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred c---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--CccceEEEEeccCCceEEEeccCceeeecc
Confidence 5 7899999999 6788888 5999999999999999999976 799999999999999999999999999995
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=331.54 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=250.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-C--
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G-- 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~-- 463 (737)
-+.+|..+.||+|++.|+|||.+|.++||+..+. ..++++. +|.+.|.++.|+ +
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---------------------~~~~~l~--gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---------------------NLLQTLR--GHTSRVGAAVFHPVDS 230 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc---------------------ceeEEEe--ccccceeeEEEccCCC
Confidence 4789999999999999999999999999987632 2223333 899999999999 3
Q ss_pred -CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 464 -SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 464 -~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
..+|+|+ ||++++|++.+...+..+.+|...|..++|+|+| +|++++.|.+-++||++++..+....||...|.+++
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 4799999 9999999999989999999999999999999999 999999999999999999999888899999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeE
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~ 619 (737)
|+|||..+++|+.|..-+|||++++ .++. +..+|. .+|.+|+|+|+|..|++ |.|++++|||++...++.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtg-----r~im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTG-----RCIM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY 381 (459)
T ss_pred ecCCCceeeccCccchhheeecccC-----cEEE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccce
Confidence 9999999999999999999999995 4455 567788 89999999999999999 599999999999988888
Q ss_pred EecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 620 QLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
++.. |..-|+.+.|+| .|.+|++++.|++++||...++.++..+.+| .+.| .++..+| |+..++|+
T Consensus 382 ~ipA--H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--------e~kV--~s~Dis~-d~~~i~t~ 448 (459)
T KOG0272|consen 382 TIPA--HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--------EGKV--ISLDISP-DSQAIATS 448 (459)
T ss_pred eccc--ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--------ccce--EEEEecc-CCceEEEe
Confidence 7754 799999999999 7899999999999999999999999998743 3334 4999999 89999999
Q ss_pred ECCCcEEEEec
Q 004683 699 LTNGRVHVIEP 709 (737)
Q Consensus 699 s~Dg~V~iWd~ 709 (737)
+.|.++++|..
T Consensus 449 s~DRT~KLW~~ 459 (459)
T KOG0272|consen 449 SFDRTIKLWRP 459 (459)
T ss_pred ccCceeeeccC
Confidence 99999999963
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=298.71 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=248.8
Q ss_pred ceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC
Q 004683 321 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 321 ~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd 399 (737)
...++.||.. +++ ..|++|++.++++|.||.+.|||.-+ ..+...+.++ ...|..++|+|.
T Consensus 47 ~rr~LkGH~~Ki~~-----------~~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl~----s~WVMtCA~sPS 108 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYA-----------MDWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPLP----SSWVMTCAYSPS 108 (343)
T ss_pred eEEEecccccceee-----------eEecCCcCeEEeeccCCeEEEEEccc---ccceeEEecC----ceeEEEEEECCC
Confidence 3466677777 555 34899999999999999999999886 4555555555 689999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF 477 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vw 477 (737)
|+++|+|+-|+...||++..... .|.. .+...+ .+|.+.+.|+.|- +..|++++ |.++.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~-~g~~--------------~v~r~l--~gHtgylScC~f~dD~~ilT~SGD~TCalW 171 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDA-EGNV--------------RVSREL--AGHTGYLSCCRFLDDNHILTGSGDMTCALW 171 (343)
T ss_pred CCeEEecCcCceeEEEecccccc-cccc--------------eeeeee--cCccceeEEEEEcCCCceEecCCCceEEEE
Confidence 99999999999999999874321 1110 011111 2799999999999 88999999 9999999
Q ss_pred ECCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC
Q 004683 478 SLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 478 d~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
|+++|+.+..|.+|.+.|.+++++| ++ .+++|+-|+..++||++.+.++++|.+|.+.|+++.|.|+|.-+++|+.|+
T Consensus 172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence 9999999999999999999999999 77 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEE
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~ 634 (737)
+.++||++.... +..+.. .+...+|++++||..|++|.+| .|..+.+||.-.++.+..+.+ |.+.|+++.
T Consensus 252 tcRlyDlRaD~~-----~a~ys~--~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G--HeNRvScl~ 322 (343)
T KOG0286|consen 252 TCRLYDLRADQE-----LAVYSH--DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG--HENRVSCLG 322 (343)
T ss_pred eeEEEeecCCcE-----Eeeecc--CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec--cCCeeEEEE
Confidence 999999998433 321221 1112689999999999999996 889999999988988888865 799999999
Q ss_pred EccCCCEEEEEecCCeEEEEE
Q 004683 635 YSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 635 ~sp~~~~l~sgs~dg~I~vwd 655 (737)
.+|||.-|++||.|.+++||.
T Consensus 323 ~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHheeecC
Confidence 999999999999999999994
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=296.99 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=249.8
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.| |.+.|.++.|++|+++++++|.||.+.|||..+... ...+. -....|..++|
T Consensus 51 LkG--H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK------------------~haip-----l~s~WVMtCA~ 105 (343)
T KOG0286|consen 51 LKG--HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK------------------VHAIP-----LPSSWVMTCAY 105 (343)
T ss_pred ecc--cccceeeeEecCCcCeEEeeccCCeEEEEEcccccc------------------eeEEe-----cCceeEEEEEE
Confidence 777 999999999999999999999999999999654211 11111 25688999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCC------cEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 462 R--GSHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
+ |+++|+|+ |+...||++.+. ...+.+.+|.+.+.|+.|.+|++|++++.|.+..+||+++|+.+..|.+|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence 9 99999999 999999999854 45567889999999999998779999999999999999999999999999
Q ss_pred CcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEE
Q 004683 533 QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 610 (737)
Q Consensus 533 ~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iw 610 (737)
.+.|.+++++| +++.+++|+.|+..++||++.+ .+.+ .+.+|. ..|++++|.|+|.-+++| .|++.++|
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEE
Confidence 99999999999 9999999999999999999994 4555 455777 799999999999999995 88999999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
|++..+.+..+....-..+|++++||..|++|++|..|.++.|||.-.++.+..+.+| ...|. ++..+|
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--------eNRvS--cl~~s~- 325 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--------ENRVS--CLGVSP- 325 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--------CCeeE--EEEECC-
Confidence 9999999998876655788999999999999999999999999999999999998744 44455 999999
Q ss_pred CCCEEEEEECCCcEEEEe
Q 004683 691 EPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd 708 (737)
||..++||+.|.++|||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 899999999999999994
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-37 Score=290.77 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=250.3
Q ss_pred ecCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 381 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 381 ~l~~~~h~~~V~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
++++ |++.|..++..+. ...+++++.|.++.+|++... |.+.|...+.+. ||...|..+
T Consensus 10 tl~g--h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d----------------d~~~G~~~r~~~--GHsH~v~dv 69 (315)
T KOG0279|consen 10 TLEG--HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD----------------DIKYGVPVRRLT--GHSHFVSDV 69 (315)
T ss_pred eecC--CCceEEEEEeecCCCceEEEcccceEEEEEEeccC----------------ccccCceeeeee--ccceEecce
Confidence 3777 9999999999987 467889999999999998853 334555555444 899999999
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC--C
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--Q 533 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~--~ 533 (737)
..+ |++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ ++++|+.|.+|++|++.. .+..++..+ .
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999 99999999 9999999999999999999999999999999999 999999999999999875 455555443 7
Q ss_pred cceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEE
Q 004683 534 NRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 610 (737)
Q Consensus 534 ~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iw 610 (737)
+.|+|+.|+|+ ..++++++.|++|++||+++ ..+.+...+|. +.++.+++||||..+++ +.||.+.+|
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEE
Confidence 89999999998 67899999999999999998 33333556677 89999999999999998 599999999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
|++.++.+..+. +...|.+++|+|+.-+|+.+.. ..|+|||+.++..+..+......+ +.......+++++|++
T Consensus 220 dL~~~k~lysl~---a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 220 DLNEGKNLYSLE---AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA- 293 (315)
T ss_pred EccCCceeEecc---CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-
Confidence 999999988773 5889999999999888877654 459999999999888776543222 2223456788999999
Q ss_pred CCCEEEEEECCCcEEEEecCC
Q 004683 691 EPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd~~~ 711 (737)
||..|.+|..|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999999853
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=309.03 Aligned_cols=343 Identities=15% Similarity=0.161 Sum_probs=278.9
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc-
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ- 422 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~- 422 (737)
.++|+.|.+++++|+.|-++++|.++.. .......+.| |.+.|..+-|..+..-+++.+.||.+.+|.......
T Consensus 150 si~Ws~DSr~l~~gsrD~s~rl~~v~~~---k~~~~~~l~g--Hkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 150 SIDWSDDSRLLVTGSRDLSARLFGVDGN---KNLFTYALNG--HKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPE 224 (893)
T ss_pred EEEeccCCceEEeccccceEEEEEeccc---cccceEeccC--CCcceEEEEeccCcceEEEEecCceEEEEEecCCCcc
Confidence 3559999999999999999999999873 3344445777 999999999999999999999999999999872110
Q ss_pred -----------------ccccc-c-----------------eee-------------------eeEEeecCCCeeeeecc
Q 004683 423 -----------------SLEEE-N-----------------VNM-------------------ESQLYQPSSKLVMTNDI 448 (737)
Q Consensus 423 -----------------~~g~~-~-----------------~~~-------------------~~~l~~~~~~~~~~~~~ 448 (737)
.++.. . ..+ ...+++...-.+++.+.
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 00111 0 000 01234444444444333
Q ss_pred CCCCCCCeEEEEEe--CCEEEEEe-C-CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC
Q 004683 449 AADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 449 ~~~h~~~V~~v~~s--~~~l~s~s-d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~ 523 (737)
-...+|..++|+ |+++|.|+ . |.+-||+..+..-+...++|...+++++++||| .+|+|+.||.|+|||..+|
T Consensus 305 --is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 305 --ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred --cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 234678999999 99999999 3 899999999988888899999999999999999 9999999999999999999
Q ss_pred cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-
Q 004683 524 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 602 (737)
Q Consensus 524 ~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~- 602 (737)
-|..+|..|++.|+.+.|+..|+.++++|-||+|+.||+.. .+..+++..... ....+++..|.|..+++|
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-----YrNfRTft~P~p---~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-----YRNFRTFTSPEP---IQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-----cceeeeecCCCc---eeeeEEEEcCCCCEEEeec
Confidence 99999999999999999999999999999999999999987 344444433322 567789999999998886
Q ss_pred ec-CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe-eEEEEecccccCCCCccCce
Q 004683 603 HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 603 ~d-g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~~~g~~~~~v 680 (737)
.| =.|.+|++++|+.+..+.+ |.++|.+++|+|++..|++||.|.+|++||+-... .+..+.. .+.
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd- 522 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD- 522 (893)
T ss_pred cceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc-
Confidence 44 3799999999999998876 79999999999999999999999999999987542 2333322 222
Q ss_pred eeEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 681 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
+++++|+| +|+-||+++-||.|.+||+..+...
T Consensus 523 -vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 523 -VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred -eeEEEEcC-CCCeEEEEEecceEEEEEhhhceee
Confidence 55999999 8999999999999999999877544
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-36 Score=295.43 Aligned_cols=281 Identities=18% Similarity=0.192 Sum_probs=246.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |..+|+.+-|.|+-..+++++.|++|++||..++ ++...+. ||.+.|.+++|
T Consensus 104 l~g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---------------------~~e~~Lr--GHt~sv~di~~ 158 (406)
T KOG0295|consen 104 LAG--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---------------------ELERSLR--GHTDSVFDISF 158 (406)
T ss_pred hhc--cccceeeeeeccCceEEEEecCCceEEEEEccch---------------------hhhhhhh--ccccceeEEEE
Confidence 555 8999999999999999999999999999887643 3322222 89999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 462 R--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
+ |+++++++ |=.+++||..+ .++++.+.+|...|.++.|-|.| ++++++.|.+|+.|++.+|-++.++.+|...|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence 9 99999999 87799999987 67788888999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC---------------CCEEEE
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS 601 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---------------g~~l~~ 601 (737)
..+..+.||..+++++.|.+|++|-+.+.++ .. ....|. .+|.+++|.|. +.++.+
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 9999999999999999999999999988432 22 334555 67888888763 246666
Q ss_pred -EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 602 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 602 -~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
+.|++|++||+.++.++.++.+ |...|.+++|+|.|+||+++.+|+++++||++++++...+.+| . -
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~--h 377 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------E--H 377 (406)
T ss_pred ecccceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------c--c
Confidence 5999999999999999999976 7999999999999999999999999999999999999998755 3 3
Q ss_pred eeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 681 YPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
.++++.|+- +..+++||+-|.++++|..
T Consensus 378 fvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 378 FVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEEecCC-CCceEEeccccceeeeeec
Confidence 355999998 6789999999999999974
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=307.41 Aligned_cols=327 Identities=20% Similarity=0.307 Sum_probs=264.7
Q ss_pred cccCCCCCEEEEEecC-CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 345 STSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 345 ~~~spdg~~la~~s~d-g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
+.+...|.++|.|+.. |.+.+|++.. .... ...+| |...+.++++||||+++|+|+.||.|+|||..+
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqs----EsYV-lKQQg--H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---- 381 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYV-LKQQG--HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---- 381 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeec----ccee-eeccc--cccceeeEEECCCCcEEEeccCCCcEEEEeccC----
Confidence 3377789999999865 8899999984 2222 22444 999999999999999999999999999988664
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCC-CCeEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFI 499 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~ 499 (737)
|.|..+.. .|++.|+.+.|+ |+.+++.+ ||+|+.||+......+++..+. ....|++
T Consensus 382 -----------------gfC~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 382 -----------------GFCFVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred -----------------ceEEEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 44444433 699999999999 99999999 9999999999999999998654 3578999
Q ss_pred EcCCC-eEEEEECCC-eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 500 LLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg-~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
..|.| .+.+|+.|. .|.+|++++|+.+..+.||.++|.+++|+|+|..|+++|.|.+|++||+-... ....++.
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEtl~ 518 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVETLE 518 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeeeEe
Confidence 99999 888888887 79999999999999999999999999999999999999999999999987521 1222232
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC------------------CCCCCeEEEEEccC
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD------------------KMDLPITYATYSCD 638 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~------------------~h~~~v~~~~~sp~ 638 (737)
.. ..+..++|+|+|+.+++ .-||.|.+||...+..+..+.+. .....++.+++|+|
T Consensus 519 i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD 593 (893)
T KOG0291|consen 519 IR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD 593 (893)
T ss_pred ec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC
Confidence 22 57999999999999998 59999999998866555333221 12568999999999
Q ss_pred CCEEEEEecCCeEEEEEcCCCeeEEEEeccccc---------------C----------------------CC-------
Q 004683 639 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------------Q----------------------PG------- 674 (737)
Q Consensus 639 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~---------------~----------------------~g------- 674 (737)
|.++++|+..+.|.+|++.++-+++++...... . .|
T Consensus 594 G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdls 673 (893)
T KOG0291|consen 594 GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLS 673 (893)
T ss_pred CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcc
Confidence 999999999999999999998877766532211 0 00
Q ss_pred --CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 675 --TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 675 --~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+....|.+..+.|+| .|+-+|.++..| |.||.+.+.
T Consensus 674 sRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 674 SRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCCc
Confidence 112356788999999 688999998887 778887654
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=278.14 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=227.4
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
+.+.+++++.|.++.+|++......-...+..+.| |...|..+..++||.+.+++|.|+++++||+.++
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--------- 95 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--------- 95 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeec--cceEecceEEccCCceEEeccccceEEEEEecCC---------
Confidence 45678999999999999998642222222333777 9999999999999999999999999999987743
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecC--CCCCeEEEEEcCC-
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQ- 503 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~- 503 (737)
+..+.+. +|...|.+++|+ ++.+++|+ |.+|++||+.. .+..++.. +.+.|+|+.|+|+
T Consensus 96 ------------~~t~~f~--GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 96 ------------ESTRRFV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ------------cEEEEEE--ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCC
Confidence 2222222 899999999999 88999999 99999999974 44445443 3789999999998
Q ss_pred -C-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 504 -D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 504 -~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
. .|++++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++.+ +.+..+...
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-----k~lysl~a~-- 233 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-----KNLYSLEAF-- 233 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-----ceeEeccCC--
Confidence 4 9999999999999999999999999999999999999999999999999999999999984 445533332
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCC-------CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 582 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h-------~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
..|.+++|+|+..+|+.+.+..|+|||+.++.++..+....- .....+++||+||..|++|..|+.|++|
T Consensus 234 ---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 234 ---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred ---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 689999999999888888888899999999988877654321 2335678999999999999999999999
Q ss_pred EcCC
Q 004683 655 DTST 658 (737)
Q Consensus 655 d~~~ 658 (737)
.+..
T Consensus 311 qv~~ 314 (315)
T KOG0279|consen 311 QVAK 314 (315)
T ss_pred Eeec
Confidence 8753
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-34 Score=288.63 Aligned_cols=353 Identities=15% Similarity=0.151 Sum_probs=266.1
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEeeccCC
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN 420 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d----g~i~iWd~~~~ 420 (737)
..++|.|.++|+|...|+||||+... .......+++- -.++|..++|++|++++++.+.- |.+.+||.-+.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence 44899999999999999999999875 24444444444 57899999999999999988763 45667774332
Q ss_pred cc-cccccceee-------------------eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEE
Q 004683 421 KQ-SLEEENVNM-------------------ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 477 (737)
Q Consensus 421 ~~-~~g~~~~~~-------------------~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vw 477 (737)
.- .+|+...-. .+.+|+-.. .........|..-|.|+.|+ |..+++++ ||+|.+|
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC--eeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 11 223221111 112232211 11222233689999999999 99999999 9999999
Q ss_pred ECCCCcEEEEec---CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE--------------------------
Q 004683 478 SLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-------------------------- 527 (737)
Q Consensus 478 d~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~-------------------------- 527 (737)
|=.+|+.+..+. +|.+.|.+++|+||+ ++++++.|.++++||+.++++++
T Consensus 218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS 297 (603)
T KOG0318|consen 218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS 297 (603)
T ss_pred cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence 999999999998 999999999999999 99999999999999998664433
Q ss_pred -----------------EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec------ee------------
Q 004683 528 -----------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KF------------ 572 (737)
Q Consensus 528 -----------------~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~------~~------------ 572 (737)
.+.||...|++++.+|++++|++|+.||.|.-||..++...+. ..
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 3457899999999999999999999999999999876532110 00
Q ss_pred --------eeec-------------ccCCCC---------------------------------CCCCeEEEEEecCCCE
Q 004683 573 --------LHSF-------------QTGLVP---------------------------------ETTIVNHIQFHPDQIH 598 (737)
Q Consensus 573 --------~~~~-------------~~~~~~---------------------------------~~~~v~~l~~sp~g~~ 598 (737)
++.+ .-++.| -.....+++++|+++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 0000 000000 0234567889999999
Q ss_pred EEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCcc
Q 004683 599 LLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 677 (737)
Q Consensus 599 l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~ 677 (737)
+++ +.|+.|+||.+..+..........|.++|+++++|||+.+||+|...+.+.+||+.+.+.....- +-|.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHt 530 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHT 530 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeee
Confidence 999 49999999999766644443334589999999999999999999999999999999987633221 1113
Q ss_pred CceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 678 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 678 ~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
..+. +++|+| +..++|||+-|-.|.||++..+..
T Consensus 531 akI~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 531 AKIN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eeEE--EEEeCC-CceEEEeccccceEEEEEccChhh
Confidence 3444 999999 889999999999999999987653
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5e-35 Score=277.10 Aligned_cols=282 Identities=15% Similarity=0.202 Sum_probs=242.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
++| |.+.|..+.|+|+|.+|||||.|..|.+|++..... ..|- + .+|.++|..+.|
T Consensus 43 l~g--h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~------l-----kgHsgAVM~l~~ 98 (338)
T KOG0265|consen 43 LPG--HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWV------L-----KGHSGAVMELHG 98 (338)
T ss_pred cCC--CcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceee------e-----ccccceeEeeee
Confidence 555 999999999999999999999999999999664322 1121 1 179999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
. ++.+++++ |.+|+.||+++|++++.+++|...|+++.-+.-| ++.+|+.|+++++||+++..+++++. .+..+
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 9 89999999 9999999999999999999999999999866666 88899999999999999998888886 46789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCC-
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT- 614 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~- 614 (737)
+++.|..++..+++|+-|+.|++||++.+ ..+. +..||. .+|+.+..+|+|.++.+ +.|.++++||++.
T Consensus 178 tAv~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 178 TAVGFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred EEEEecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEeccc
Confidence 99999999999999999999999999873 3344 566787 89999999999999999 8999999999874
Q ss_pred ---CceeEEecCCCCC--CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 615 ---LNHTSQLVPDKMD--LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 615 ---~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
.+++..+.++.|. .....++|||++..+.+|+.|..+++||..+...+..+++| .+.|+ +++|+|
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--------~gsvn--~~~Fhp 318 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--------YGSVN--EVDFHP 318 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--------ceeEE--EeeecC
Confidence 4567788776664 34557889999999999999999999999998888888744 33455 999999
Q ss_pred CCCCEEEEEECCCcEEEEe
Q 004683 690 LEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd 708 (737)
...++.+++.|.+|++=+
T Consensus 319 -~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 -TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred -CCcEEEEeccCceeEeec
Confidence 688999999999998744
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=309.86 Aligned_cols=360 Identities=14% Similarity=0.158 Sum_probs=287.6
Q ss_pred CCCCCCCcceeeccCCCCCcce-eeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCe
Q 004683 313 DKPNQEGRPLDASSGDDSNDSS-CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV 391 (737)
Q Consensus 313 ~~~~~~~~~l~~~~gh~~~~s~-l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V 391 (737)
......+...+.+.||.++.+. +|.++ +.-..|++|..|+++++||+... ..|... +.. |.+.|
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~---------~~~~lL~sg~~D~~v~vwnl~~~---~tcl~~-~~~--H~S~v 195 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPH---------WNRWLLASGATDGTVRVWNLNDK---RTCLHT-MIL--HKSAV 195 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCc---------cchhheeecCCCceEEEEEcccC---chHHHH-HHh--hhhhe
Confidence 3345567788899999995554 45444 22356899999999999999852 335554 666 99999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEeeccCCcc----------------cc-----ccccee----eee-------------
Q 004683 392 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SL-----EEENVN----MES------------- 433 (737)
Q Consensus 392 ~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~----------------~~-----g~~~~~----~~~------------- 433 (737)
++++|++|+.-++++|.|..+.|||+...+. +. |..... ...
T Consensus 196 tsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~ 275 (775)
T KOG0319|consen 196 TSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYK 275 (775)
T ss_pred eeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhh
Confidence 9999999999999999999999999854332 01 000000 001
Q ss_pred -------------------------------------------------------------------------EEeecCC
Q 004683 434 -------------------------------------------------------------------------QLYQPSS 440 (737)
Q Consensus 434 -------------------------------------------------------------------------~l~~~~~ 440 (737)
++|+..+
T Consensus 276 ~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 276 QRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred hccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence 2333222
Q ss_pred CeeeeeccCCCCCCCeEEEE-Ee-CCEEEEEe-CCeEEEEECCCCc----EEEEecCCCCCeEEEEEcCCC--eEEEEEC
Q 004683 441 KLVMTNDIAADPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFD 511 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~-~s-~~~l~s~s-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~--~l~sgs~ 511 (737)
..+. ...||+..|.++. |+ |.+|++|+ |.++++|.++++. ++....+|.+.|.+++++..+ .|+++|.
T Consensus 356 ~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 356 SYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred CceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 2222 1237999999999 55 88999999 9999999885432 445567999999999998888 9999999
Q ss_pred CCeEEEEecCCCcE-----E----EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 512 DSSILVHCPCTKKT-----K----AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 512 dg~I~vwd~~~~~~-----~----~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
|+++++|++...+. + .+...|...|+|++++|+.+.+++||.|++.++|++... .... ...||.
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~-vLsGH~- 505 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLG-VLSGHT- 505 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-----eEEE-EeeCCc-
Confidence 99999999875211 1 123459999999999999999999999999999999962 2233 567888
Q ss_pred CCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 583 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
..|.++.|+|..+.+++ |.|++|+||.+.++.|++++.+ |...|..+.|-.+|+.|++++.||-|++|+++++++
T Consensus 506 --RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 506 --RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred --cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 79999999999999998 5999999999999999999976 799999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 662 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
...+..| ...+| +++-+| ...+++||+.||.|.+|.=.+.
T Consensus 582 ~~tlD~H--------~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 582 EMTLDAH--------NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhc--------cceeE--EEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 9999865 66688 888899 7889999999999999976553
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=264.15 Aligned_cols=273 Identities=13% Similarity=0.164 Sum_probs=226.1
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEE
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 478 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd 478 (737)
-+|+++|.|.+|++|... +|.+..+.. ..++.|+.+... ++.||+++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~---------------------tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL---------------------TGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehh---------------------cCeEEEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 479999999999877655 455554443 466789999998 7788888899999999
Q ss_pred CCCCc--EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC
Q 004683 479 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 479 ~~~~~--~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
+.+++ ++.++.+|...|+++.|..+| .+++|++||+++|||++...+.+.++ |.++|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98865 688999999999999999999 99999999999999999977777676 779999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCc------eeEEecCCCCCC
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL 628 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~------~~~~~~~~~h~~ 628 (737)
.|++||+....+.. .+ +++.. ..|.++...|||+++++. ..|..++|++-+.. ++..++ .|.+
T Consensus 147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 99999999842211 11 23322 589999999999999986 77999999986543 344444 3789
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCCC-eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE
Q 004683 629 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 707 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW 707 (737)
.+..+.+|||+++|+++|.|.+++||+.++- +....+..+ ...++ .++||. |+.||+||+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--------~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--------QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--------CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999987 444444422 44566 999999 89999999999999999
Q ss_pred ecCCCc--eeeee
Q 004683 708 EPLESE--VEWGK 718 (737)
Q Consensus 708 d~~~~~--~~w~~ 718 (737)
++..++ ..|+.
T Consensus 286 ~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 286 DLSAGKEVRQYQG 298 (311)
T ss_pred ccccCceeeecCC
Confidence 999988 44443
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-33 Score=282.10 Aligned_cols=342 Identities=13% Similarity=0.088 Sum_probs=263.5
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecC-CCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~-~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
.++.++|||..+|+++.||++.+||-.+ +..... +. ..+|.+.|.+++||||++.++|+|.|.+++|||+.+..
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGkt----ge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKT----GEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCC----ccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 3566999999999999999999999774 333332 44 24599999999999999999999999999999998876
Q ss_pred c----cccccc------------------eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 422 Q----SLEEEN------------------VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 422 ~----~~g~~~------------------~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
+ +.|..+ ....+..+++..+....... ||...|++++.+ +++|++|+ ||.|.-
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~--GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS--GHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec--ccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 5 112111 01123455665555444333 899999999999 89999999 999999
Q ss_pred EECCCCcEEEEe-cCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCc------------E------------------
Q 004683 477 FSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------------T------------------ 525 (737)
Q Consensus 477 wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~------------~------------------ 525 (737)
|+..+|..-+.. ++|...|.+++-+..+.+++.+.|.++++.++..+. +
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 999998876665 689999999998876778888899999999764221 0
Q ss_pred -EEEEcCC--------CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC
Q 004683 526 -KAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 526 -~~~l~~~--------~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g 596 (737)
+..++.+ .-...+++++|+++.+++|+.|+.|++|.+..++.... . ....|. ++|+++++|||+
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--~--~~~~h~---a~iT~vaySpd~ 499 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--A--KLLEHR---AAITDVAYSPDG 499 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--e--eeeccc---CCceEEEECCCC
Confidence 0111211 12346899999999999999999999999988553221 1 122344 799999999999
Q ss_pred CEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCC
Q 004683 597 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 675 (737)
Q Consensus 597 ~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~ 675 (737)
.+|+++ ..+.+.+||+.+.+....... -|...|.+++|+|+..++|+|+-|-.|.||+++.....-.+.. .|
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~-FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn------AH 572 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWA-FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN------AH 572 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceee-eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc------cc
Confidence 999997 789999999998876433222 2789999999999999999999999999999987654433321 22
Q ss_pred ccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 676 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 676 ~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
...++ .+.|-. ...+++.+.|..|++|++.
T Consensus 573 -~~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 -LGGVN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -ccCce--eEEEec--CceEEeccCcceeEEeccc
Confidence 33355 999974 5789999999999999874
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-34 Score=263.25 Aligned_cols=281 Identities=14% Similarity=0.161 Sum_probs=232.1
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccccccee
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 430 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~ 430 (737)
.-+||++|.|.+||+|... ++.|... ++. ..+.|+.+...||+++||+++. ..|++||+.+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~----tG~C~rT-iqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-------- 73 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL----TGICSRT-IQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-------- 73 (311)
T ss_pred ceEEEeccCcceeeeeehh----cCeEEEE-Eec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--------
Confidence 4578999999999999998 5888876 553 3678999999999999988875 5788888775322
Q ss_pred eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 004683 431 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 506 (737)
Q Consensus 431 ~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l 506 (737)
..+. ...+|...|.++.|. |+++++|+ ||+++|||+....+.+.+ .|..+|+++..+|+. .|
T Consensus 74 -----------~Pv~--t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 74 -----------NPVA--TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred -----------Ccee--EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceE
Confidence 0111 112799999999999 99999999 999999999986666666 455899999999999 99
Q ss_pred EEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee-ceeeeecccCCCCCC
Q 004683 507 AFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPET 584 (737)
Q Consensus 507 ~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~-~~~~~~~~~~~~~~~ 584 (737)
++|..+|.|++||+.+..+...+-. ...+|.+++..|||++++.+...|+.++|++-+..... ..++.+ ...|.
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~--- 215 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHN--- 215 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh-eeccc---
Confidence 9999999999999998877766543 45789999999999999999999999999987643222 233332 33455
Q ss_pred CCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 585 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
+.+..+.+||++++|++ |.|.+++||+.++. +.-..+. .|...++.++||.||.||++|+.|+.+++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 78999999999999999 59999999999887 3333443 46899999999999999999999999999999999998
Q ss_pred EEEec
Q 004683 663 CQINL 667 (737)
Q Consensus 663 ~~~~~ 667 (737)
..+.+
T Consensus 294 ~qy~g 298 (311)
T KOG0315|consen 294 RQYQG 298 (311)
T ss_pred eecCC
Confidence 88864
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.1e-35 Score=295.08 Aligned_cols=284 Identities=17% Similarity=0.232 Sum_probs=241.9
Q ss_pred cCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
+.| |+..|.++.|.| .+.+|++++.|+.|+||++. + .+.++.++. +|..+|.+++
T Consensus 210 ~~g--H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy------------------~--~~~~lrtf~--gH~k~Vrd~~ 265 (503)
T KOG0282|consen 210 LSG--HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY------------------D--DRRCLRTFK--GHRKPVRDAS 265 (503)
T ss_pred ccC--CccccchhhhccceeeEEEecCCCceEEEEEEe------------------c--Ccceehhhh--cchhhhhhhh
Confidence 566 999999999999 89999999999999999854 4 455666555 8999999999
Q ss_pred Ee--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcc
Q 004683 461 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 535 (737)
Q Consensus 461 ~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~ 535 (737)
|+ |..+++++ |+.+++||+++|+++..+... ..++|+.|+|++ .+++|+.|+.|+.||+++++.++.+..|-+.
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 99 99999999 999999999999999998643 367899999999 8999999999999999999999999989999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCC
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 614 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~ 614 (737)
|..+.|-++|+.+++.+.|+++++|+.+....+.. +. .... ....++..+|+++++++ +.|+.|.+|.+..
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~--i~-~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN--IA-DPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchh--hc-chhh-----ccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 99999999999999999999999999987432211 11 1222 35778999999999999 8999999998753
Q ss_pred C---ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 615 L---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 615 ~---~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
. .....+.++.-.+.-..+.|||||.+|++|+.||.+.+||.++-+++..+..| +.. ++.+.|||..
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--------~~~--ci~v~wHP~e 486 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--------DQP--CIGVDWHPVE 486 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--------Ccc--eEEEEecCCC
Confidence 2 22334555444677788999999999999999999999999999999888754 333 4599999988
Q ss_pred CCEEEEEECCCcEEEEe
Q 004683 692 PNRIALGLTNGRVHVIE 708 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd 708 (737)
...+|||+.||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 88999999999999996
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9e-33 Score=258.25 Aligned_cols=290 Identities=19% Similarity=0.214 Sum_probs=231.8
Q ss_pred cCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
+++ |.+.|+.++|+|- |..|||||.|..|+||+...+.. | .+.. .+..+|...|.+++
T Consensus 10 ~~g--h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~-----~ck~-vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 10 LSG--HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------W-----TCKT-VLDDGHKRSVRSVA 68 (312)
T ss_pred ecC--CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------E-----EEEE-eccccchheeeeee
Confidence 666 9999999999998 99999999999999999763111 1 1222 22337999999999
Q ss_pred Ee--CCEEEEEe-CCeEEEEECCC--CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC---cEEEEEcC
Q 004683 461 LR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKG 531 (737)
Q Consensus 461 ~s--~~~l~s~s-dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~---~~~~~l~~ 531 (737)
|+ |++|++++ |.++.||.-.. .+++.++.||...|.|++|+++| +||+++.|+.|.+|.+..+ .+...++.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99 99999999 99999998654 47889999999999999999999 9999999999999998744 57788999
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEE
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 609 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~i 609 (737)
|+..|..+.|+|...+|+++|.|++|++|+-. ... ..+.+ ...+|. ..|.+++|+|.|..|+++ .|++++|
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEe
Confidence 99999999999999999999999999999876 322 23444 344565 689999999999998884 8899999
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
|-..+. + +..|...++.+.|. ...|++++.|+.|++|.-...-.-..+..... ..+.|...|+ ++.|+|
T Consensus 222 w~~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVN--sV~w~p 290 (312)
T KOG0645|consen 222 WRLYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVN--SVQWNP 290 (312)
T ss_pred eeeccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccc--eEEEcC
Confidence 986522 2 22368889999998 56899999999999998775322222211110 1122233455 999999
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 004683 690 LEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~ 710 (737)
..+++|++|++||.|++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 558899999999999999875
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=287.84 Aligned_cols=279 Identities=18% Similarity=0.229 Sum_probs=240.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
..+|..|.|.|+|+.|++|+..|.+.+|+... ++. ....+.|+++|.++.|+ |.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------fnF-------EtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------FNF-------ETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce----------------eeH-------HHHhhhhcccceeEEEccCCCE
Confidence 56899999999999999999999999998542 111 11222699999999999 999
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
+++|. +|.|++|+.. ...++.+++|. ..|++++|+|++ .|++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 8999999986 44556666554 899999999999 99999999999999999888888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
|.-..++++|.|..|++||.+++.+ +. ...+|. ..|..+.|+|++++|++ |.|..++++|+++.+.++++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~c-----l~-tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSC-----LA-TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcch-----hh-hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 9999999999999999999999654 33 234565 78999999999999999 69999999999988888888
Q ss_pred cCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 622 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
.+ |...|+++.|+| ...++.+|+.||.|..|.+...+++..+.. +| +..|+ +++||| =|.+|++|+.
T Consensus 303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------AH-d~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------AH-DGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------cc-cccee--eeeccc-cceeEeecCC
Confidence 76 789999999999 667888999999999999996666665543 33 55677 999999 6999999999
Q ss_pred CCcEEEEecCC
Q 004683 701 NGRVHVIEPLE 711 (737)
Q Consensus 701 Dg~V~iWd~~~ 711 (737)
|.++++|.-..
T Consensus 371 d~t~rfw~r~r 381 (464)
T KOG0284|consen 371 DRTVRFWTRNR 381 (464)
T ss_pred CcceeeeccCC
Confidence 99999998654
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-34 Score=305.68 Aligned_cols=271 Identities=17% Similarity=0.237 Sum_probs=233.2
Q ss_pred CCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc---cccccc-------eeeeeEEeecCCCee
Q 004683 374 PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---SLEEEN-------VNMESQLYQPSSKLV 443 (737)
Q Consensus 374 ~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~---~~g~~~-------~~~~~~l~~~~~~~~ 443 (737)
+..|...... ....+.|+.||+|++.||.|-.|..|++|.+.+... +..... +.+.....|..++..
T Consensus 367 pSic~YT~~n---t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 367 PSICMYTFHN---TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CcEEEEEEEE---cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 4445444322 356899999999999999999999999999986432 111111 111234556555555
Q ss_pred eeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEe
Q 004683 444 MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 519 (737)
Q Consensus 444 ~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd 519 (737)
...+. ||.++|..+.|+ .++|++++ |++|++|.+.+..++-.+.||..+|+++.|+|-| ++|+|+.|++.++|.
T Consensus 444 ~~~L~--GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 444 SRTLY--GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred eEEee--cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 55444 899999999999 88999999 9999999999999999999999999999999999 999999999999999
Q ss_pred cCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 520 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 520 ~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.....+.+.+.+|-+.|.|+.|+|++.++++||.|.+||+||+.+|. .++ ++.||. ++|.+++|||+|++|
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VR-iF~GH~---~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVR-IFTGHK---GPVTALAFSPCGRYL 592 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEE-EecCCC---CceEEEEEcCCCceE
Confidence 99999999999999999999999999999999999999999999954 344 667888 899999999999999
Q ss_pred EEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 600 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 600 ~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
+++ .||.|.+||+.+++.+..+.+ |.+.|.++.||.+|..||+|+.|++|++||+..-.
T Consensus 593 aSg~ed~~I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eecccCCcEEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 995 999999999999999999876 69999999999999999999999999999987543
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=267.70 Aligned_cols=316 Identities=14% Similarity=0.187 Sum_probs=258.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..|+..++++|+.|....+|+..+ +. ....+.| |.+.|.++.||.||.+||||+.+|.|+||+..++..
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~----ge-~~~eltg--HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~---- 140 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDIST----GE-FAGELTG--HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE---- 140 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccC----Cc-ceeEecC--CCCceEEEEEccCceEEEecCCCccEEEEEcccCce----
Confidence 678889999999999999999985 33 3344777 999999999999999999999999999998775332
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 503 (737)
. |.. . ..-..+.-+.|+ +..|++|+ ||.+..|.+.++...+.+.+|..++++=.|.|+
T Consensus 141 -~-------~~~---------~--~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 141 -Q-------WKL---------D--QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred -E-------EEe---------e--cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 1 111 1 244667788899 88899999 999999999998899999999999999999999
Q ss_pred C-eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee--eeecccC
Q 004683 504 D-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSFQTG 579 (737)
Q Consensus 504 ~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~--~~~~~~~ 579 (737)
| .+++|..||+|++||+.+++++..+.+ ......++.++..+..++.|+.++.+++-+..+++.+.... ...+...
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 9 999999999999999999999988864 24467788999999999999999999998888765433211 1112223
Q ss_pred CCCCCCCeEEEEEec---CCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 580 LVPETTIVNHIQFHP---DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp---~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
+. ..+.++.+.| .=...|++ -||+|.|||+...++..... |...|+.+.|-+ ..+|++++.+|.|+.||
T Consensus 282 ~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 282 QE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred ch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeee
Confidence 33 3444555544 44555664 89999999998887766653 678899999998 78999999999999999
Q ss_pred cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 656 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
.++|++...+.+| ...|. +++.+| +.++++|+|.|++.+||++.
T Consensus 355 aRtG~l~~~y~GH--------~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTGQLKFTYTGH--------QMGIL--DFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccccceEEEEecC--------chhee--EEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999854 33455 999999 89999999999999999875
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-33 Score=296.24 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=208.6
Q ss_pred CCCccccccCCCCCEEEEEecCCeEEEeecCccC--------------------------CCCceeeeecCCCCCCCCeE
Q 004683 339 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN--------------------------EPSECRTLLLPDNSFGGRVV 392 (737)
Q Consensus 339 ~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~--------------------------~~~~~~~~~l~~~~h~~~V~ 392 (737)
+....+.+|++|+.++|.|-.|..|++|.+...+ ........++-| |+++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G--H~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG--HSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec--CCCcee
Confidence 3445566799999999999999999999987311 000111112444 999999
Q ss_pred EEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004683 393 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 470 (737)
Q Consensus 393 ~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 470 (737)
.+.|+|+.++|++||.|+++++|.+.+..+ +.... ||..+|+++.|+ |-++||++
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~---------------------~V~y~--GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---------------------LVIYK--GHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred eeeecccccceeeccCCcceeeeeccccee---------------------EEEec--CCCcceeeEEecCCceEEEecC
Confidence 999999999999999999999999875322 11112 799999999999 99999999
Q ss_pred -CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 471 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 471 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
|++.++|......+.+.+.+|-+.|.|+.|+|+. ++++||.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCC
Q 004683 549 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 614 (737)
Q Consensus 549 ~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~ 614 (737)
++|+.||.|.+||+.++. .+. ...+|+ +.|.++.|+.+|..|++ |.|.+|++||+..
T Consensus 593 aSg~ed~~I~iWDl~~~~-----~v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGS-----LVK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eecccCCcEEEEEcCCCc-----chh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999853 333 344566 89999999999999999 5999999999864
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=273.89 Aligned_cols=270 Identities=20% Similarity=0.287 Sum_probs=239.8
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+.|+-..+++++.|+++++||.. ++++... |.| |++.|..++|+..|++|+++|.|-.+.+||.....
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~----tg~~e~~-LrG--Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----- 183 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTE----TGELERS-LRG--HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----- 183 (406)
T ss_pred eccCceEEEEecCCceEEEEEcc----chhhhhh-hhc--cccceeEEEEecCccEEEecCCccchhheeHHHHH-----
Confidence 56777789999999999999999 4666554 777 99999999999999999999999989999876311
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 503 (737)
.+++... +|...|.+++|- |+++++++ |.+|+.|++.+|.++.++.+|...|..+..+.|
T Consensus 184 ---------------~c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 184 ---------------RCIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred ---------------HHHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 1222222 799999999999 99999999 999999999999999999999999999999999
Q ss_pred C-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC---------------CCEEEEEeCCCcEEEEeCCCCce
Q 004683 504 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 504 ~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~---------------g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
| .+++++.|.+|++|-+.++++...++.|+.+|.|++|.|. +.++.+++.|++|++||+.++
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 9 9999999999999999999999999999999999999763 248999999999999999995
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.++.+ ..+|. ..|..++|+|.|+||+++ .|+++++||++++++..++.. |...++++.|..+..++++|+
T Consensus 325 ---~cL~t-L~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a--h~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 325 ---MCLFT-LVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA--HEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred ---eEEEE-Eeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC--CcceeEEEecCCCCceEEecc
Confidence 45553 44676 799999999999999995 889999999999999999875 688999999999999999999
Q ss_pred cCCeEEEEEc
Q 004683 647 KSGHVKVFDT 656 (737)
Q Consensus 647 ~dg~I~vwd~ 656 (737)
-|.++++|..
T Consensus 396 Vdqt~KvwEc 405 (406)
T KOG0295|consen 396 VDQTVKVWEC 405 (406)
T ss_pred ccceeeeeec
Confidence 9999999974
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-33 Score=290.00 Aligned_cols=348 Identities=14% Similarity=0.143 Sum_probs=264.4
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCC--EEEEEECCCcEEEeeccC
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQS 419 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~--~L~s~s~dg~i~iWd~~~ 419 (737)
....++.|.|..+++|+.|+.+++||+. .+.|... |.| |.+.|+++.|.|+-. .|++|+.|+++++||+..
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~----~~~~th~-fkG--~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIK----NGYCTHS-FKG--HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEee----CCEEEEE-ecC--CCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 3445588999999999999999999999 4677766 888 999999999999765 488999999999999985
Q ss_pred Ccc------------------cccccceee----eeEEeecCCCeeeeeccC----------------------------
Q 004683 420 NKQ------------------SLEEENVNM----ESQLYQPSSKLVMTNDIA---------------------------- 449 (737)
Q Consensus 420 ~~~------------------~~g~~~~~~----~~~l~~~~~~~~~~~~~~---------------------------- 449 (737)
... +++....+. .+.+||..+.+.......
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 433 222222211 246787754332221110
Q ss_pred -----------------------------------------------------------CCCCCCeEEEEEe---CCEEE
Q 004683 450 -----------------------------------------------------------ADPKDSISCFALR---GSHLF 467 (737)
Q Consensus 450 -----------------------------------------------------------~~h~~~V~~v~~s---~~~l~ 467 (737)
-|..+.|.+++|- .++++
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0112334444444 24444
Q ss_pred EEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc----EEEEEcCCCcceEEEEE
Q 004683 468 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAY 541 (737)
Q Consensus 468 s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~----~~~~l~~~~~~v~~l~~ 541 (737)
.++ .+.+++|+..+..+. .+.+|...|.+++...+| .|++|+.|.++++|.++++. ++....+|++.|.++++
T Consensus 341 VATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 444 344555544443333 567899999999977888 99999999999999875443 34566789999999999
Q ss_pred eCCC-CEEEEEeCCCcEEEEeCCCCceeeceeee----ecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC
Q 004683 542 SLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH----SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 615 (737)
Q Consensus 542 sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~ 615 (737)
+..+ .+++++|.|+++++|++...+.... ++. .....|. ..|++++++|+.+.+++ |.|.+.+||+++..
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhc---ccccceEecCCCceEEecccccceeeecccCc
Confidence 7754 5799999999999999986222111 111 1234565 79999999999999999 59999999999988
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 695 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 695 (737)
....++.+ |...|+++.|+|..+.++++|.|++|+||.+.+..++.++.+| .. . +..+.|-. ++..|
T Consensus 496 ~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-------~~-a--Vlra~F~~-~~~ql 562 (775)
T KOG0319|consen 496 RLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-------TS-A--VLRASFIR-NGKQL 562 (775)
T ss_pred eEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-------cc-e--eEeeeeee-CCcEE
Confidence 88888876 7999999999999999999999999999999999999999743 23 2 45889988 79999
Q ss_pred EEEECCCcEEEEecCCCce
Q 004683 696 ALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 696 as~s~Dg~V~iWd~~~~~~ 714 (737)
++|+.||-+++|++.+.+|
T Consensus 563 iS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EeccCCCcEEEEeccchhh
Confidence 9999999999999998754
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=283.97 Aligned_cols=274 Identities=18% Similarity=0.217 Sum_probs=236.4
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
.+.|.|+|+.|++|+..|.+.+|+... -.+..+ ++. |.++|.++.||++|.+++||+.+|.|++|+..-...
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEti-lQa--HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTS----FNFETI-LQA--HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCce----eeHHHH-hhh--hcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 355999999999999999999999652 222222 444 999999999999999999999999999998552211
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
+. ...+|...|.+++|+ +..|++|+ ||+|+|||....+..+.+.+|.-.|.|++|
T Consensus 173 ------------------k~----~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 173 ------------------KI----IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred ------------------HH----hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 00 111466999999999 88999999 899999999999988999999999999999
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
+|.. .|++|+.|..|++||.++|.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++ .+.++ ...+
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~-~~r~ 304 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELF-TYRG 304 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHH-Hhhc
Confidence 9999 999999999999999999999999999999999999999999999999999999999996 34444 3556
Q ss_pred CCCCCCCeEEEEEecCCCEEEE--EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 580 LVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
|. ..|+++.|+|-..-|++ |.||.|..|.+...+++..+.. .|...|++++|+|-|..|++|+.|.++++|...
T Consensus 305 Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 305 HK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 76 79999999998765554 5999999999986777766644 589999999999999999999999999999865
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=269.78 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=246.7
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |.+.|.|+++.|...++++|+.|++++|||+.+ |.+...+. ||...|..+++
T Consensus 147 i~g--HlgWVr~vavdP~n~wf~tgs~DrtikIwDlat---------------------g~Lkltlt--Ghi~~vr~vav 201 (460)
T KOG0285|consen 147 ISG--HLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT---------------------GQLKLTLT--GHIETVRGVAV 201 (460)
T ss_pred hhh--ccceEEEEeeCCCceeEEecCCCceeEEEEccc---------------------CeEEEeec--chhheeeeeee
Confidence 455 999999999999999999999999999988764 33333333 79999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
| -.|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|.
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence 9 78999999 9999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCce
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 617 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~ 617 (737)
++.+.|-...+++||.|++|++||++.++ ...+ ...|. ..|.+++.+|....++++....|+-|++..|..
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agk-----t~~t-lt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f 352 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGK-----TMIT-LTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEF 352 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCc-----eeEe-eeccc---ceeeEEecCCchhhhhccCCccceeccCCccch
Confidence 99999988899999999999999999854 3332 23444 689999999999889888888999999999998
Q ss_pred eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 618 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+..+.+ |..-|.+++...|| ++++|+++|.+.+||.++|...+.... ....|+-....-+.+.+|.. .+..|++
T Consensus 353 ~~nlsg--h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGSl~sEagI~as~fDk-tg~rlit 426 (460)
T KOG0285|consen 353 LQNLSG--HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGSLESEAGIFASCFDK-TGSRLIT 426 (460)
T ss_pred hhcccc--ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc--cccCCccccccceeEEeecc-cCceEEe
Confidence 888654 68889999887665 788999999999999999865554421 12223323323345889988 6889999
Q ss_pred EECCCcEEEEecCC
Q 004683 698 GLTNGRVHVIEPLE 711 (737)
Q Consensus 698 ~s~Dg~V~iWd~~~ 711 (737)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999998654
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-32 Score=271.59 Aligned_cols=275 Identities=16% Similarity=0.154 Sum_probs=238.7
Q ss_pred CCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccC
Q 004683 340 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 419 (737)
Q Consensus 340 ~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~ 419 (737)
......+|+.+|..||+|+.||.++||+..+ ..... |.. |.++|.++.|+.+|+||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~t--l~~--HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLIST--LGQ--HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhh--hhc--cCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 3445567999999999999999999999874 22222 333 999999999999999999999999999888653
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEE
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 497 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 497 (737)
|...+... -|..+-..|.|- ...+++++ |+.|+|+.+....++.++.+|.+.|.+
T Consensus 308 ---------------------g~~~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 308 ---------------------GTVKQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred ---------------------ceEEEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence 33333222 366666788998 88899988 999999999999999999999999999
Q ss_pred EEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCC---------CEEEEEeCCCcEEEEeCCCCce
Q 004683 498 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g---------~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
+.|+|.| .|++++.|+++++|......+...+.+|...|..+.|+|.| ..+++++.|++|++||+..+
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-- 442 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-- 442 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--
Confidence 9999999 99999999999999999999999999999999999999965 37999999999999999984
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.++.++. .|. .+|++++|+|+|+++++| .||.|++|+.++++.++.+.+ .+.|..++|+.+|..|.++-
T Consensus 443 ---v~i~~f~-kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 443 ---VPIHTLM-KHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred ---ceeEeec-cCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEe
Confidence 5566443 454 799999999999999995 899999999999999999976 67799999999999999999
Q ss_pred cCCeEEEEEcC
Q 004683 647 KSGHVKVFDTS 657 (737)
Q Consensus 647 ~dg~I~vwd~~ 657 (737)
.||.+.+.|+.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99999998875
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-33 Score=267.65 Aligned_cols=277 Identities=12% Similarity=0.142 Sum_probs=231.5
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~--~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
|||||+++++|+.||-|.+|+..+++...... +.-+. ..|.++|.|+.||.|...||+|+.||.|+||.+.++.+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C-- 297 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC-- 297 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhh-hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH--
Confidence 99999999999999999999998643211111 10111 23789999999999999999999999999998775443
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
+..+. ..|+..|+|+.|+ +..+++++ |.++++.-+.+|++++.+.+|...|+...|.
T Consensus 298 -------------------lRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 298 -------------------LRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred -------------------HHHhh-hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 22221 1599999999999 78899999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcC--CCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~--~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
+|| .+++++.||+|++|+..+.+|+.+++. ...+|+++..-| +...++++...++|++.++.. ..++++.
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVrsfs 431 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVRSFS 431 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEeeec
Confidence 999 999999999999999999999998875 345788887777 456788999999999999986 4455444
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
.|... .+...+.+.||.|.++.+ +.|+.++.|.+.+|+.-.++.. |...+..++-+|..+.+++-++||.+++|.
T Consensus 432 SGkRE-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKRE-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCcc-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 44321 156678889999999998 8999999999999999888865 688899999999999999999999999995
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-32 Score=296.73 Aligned_cols=287 Identities=25% Similarity=0.308 Sum_probs=242.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|...|.++.|||+|+++++++.|+.+++|+..... + .....+ .+|...|.+++|+ +.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~---------------~----~~~~~l--~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK---------------S----NLLREL--SGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc---------------c----hhhccc--cccccceeeeEECCCCc
Confidence 47899999999999999999999999999874321 0 011111 2799999999999 88
Q ss_pred EEEEEe-CCeEEEEEC-CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEE
Q 004683 465 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~ 541 (737)
++++++ |+++++||+ ..+..++++.+|...|++++|+|++ .+++|+.|++|++||+++++++..+.+|...|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 6668999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCC-CeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeE
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~ 619 (737)
+++++.+++++.|+.|++||+.++... ++. ...++.. . ++++++|+|++++++++ .|+.+++||+..+..+.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~--~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAEN--SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCC--CCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 999999999999999999999996532 233 2223332 3 68999999999999995 77899999999999999
Q ss_pred EecCCCCC-CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 620 QLVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 620 ~~~~~~h~-~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
.+.++... ..+.+...++.+.++++|+.|+.|++|+..++..+..+..| .. -.+..++|+| ...+++++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h-------~~--~~~~~~~~~~-~~~~~~s~ 440 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH-------SK--AAVSDLSSHP-TENLIASS 440 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC-------CC--CceeccccCC-CcCeeeec
Confidence 98774322 24555666789999999999999999999998888887643 12 2245899999 78999999
Q ss_pred E--CCCcEEEEecC
Q 004683 699 L--TNGRVHVIEPL 710 (737)
Q Consensus 699 s--~Dg~V~iWd~~ 710 (737)
+ .|+.+++|...
T Consensus 441 s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 441 SFEGDGLIRLWKYD 454 (456)
T ss_pred CcCCCceEEEecCC
Confidence 8 78999999764
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-32 Score=246.62 Aligned_cols=280 Identities=12% Similarity=0.098 Sum_probs=234.5
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.++|..+.|+-||+|.++|+.|.+|++|+.. .|.++++.. +|...|..++.
T Consensus 13 l~~--~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------------------rg~liktYs--ghG~EVlD~~~ 67 (307)
T KOG0316|consen 13 LDC--AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------------------RGALIKTYS--GHGHEVLDAAL 67 (307)
T ss_pred ecc--cccceEEEEEccCCCEEEEcCCCceEEeeccc---------------------ccceeeeec--CCCceeeeccc
Confidence 555 89999999999999999999999999887654 445555554 89999999998
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC--cEEEEEcCCCcc
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNR 535 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~--~~~~~l~~~~~~ 535 (737)
+ +..+++|+ |..|.+||+.+|+..+.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++. ++++.+......
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 8 77888888 9999999999999999999999999999999999 9999999999999998864 578888878888
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCC
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 614 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~ 614 (737)
|.++..+ +..+++|+.||+++.||++.+.... -.-+ .+|++++|+++++..++ +-|+++++.|-.+
T Consensus 148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred eeEEEec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccch
Confidence 9998886 4679999999999999999854221 1223 58999999999999887 5999999999999
Q ss_pred CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 615 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 615 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
|+.+..++++.....-...+++.....+++|++||.|++||+.....+..+..+ +.+.+++++++|+ -.-
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~---------~~v~v~dl~~hp~-~~~ 284 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV---------STVIVTDLSCHPT-MDD 284 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC---------CceeEEeeecccC-ccc
Confidence 999999988655555667788888899999999999999999999988887643 3466779999995 444
Q ss_pred EEEEECCCcEEEEecC
Q 004683 695 IALGLTNGRVHVIEPL 710 (737)
Q Consensus 695 las~s~Dg~V~iWd~~ 710 (737)
|.+++ ++.+..|.-.
T Consensus 285 f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 285 FITAT-GHGDLFWYQE 299 (307)
T ss_pred eeEec-CCceeceeeh
Confidence 55553 3456666543
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5e-31 Score=310.43 Aligned_cols=319 Identities=13% Similarity=0.146 Sum_probs=241.1
Q ss_pred CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecC
Q 004683 360 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 439 (737)
Q Consensus 360 dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~ 439 (737)
+|.+++|+............-.+. .|.+.|.+++|+|+|++||+|+.|++|+||+...... .+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~-~~~~~----------- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLL--NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK-DGRDI----------- 522 (793)
T ss_pred hhhhhhhcccceEEEEeecccccc--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc-ccccc-----------
Confidence 556777876642110111101122 2899999999999999999999999999999753211 01000
Q ss_pred CCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEECCC
Q 004683 440 SKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDS 513 (737)
Q Consensus 440 ~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg 513 (737)
....... .+...|.+++|+ +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.|+
T Consensus 523 -~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 523 -HYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred -ccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 0000001 245678999998 67899999 99999999999999999999999999999997 66 999999999
Q ss_pred eEEEEecCCCcEEEEEcCCCcceEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 514 SILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 514 ~I~vwd~~~~~~~~~l~~~~~~v~~l~~s-p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
.|++||++++..+..+..+ ..+.++.|+ ++|.++++|+.||.|++||++... .++. ...+|. ..|.++.|
T Consensus 599 ~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVRF 669 (793)
T ss_pred EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEEE
Confidence 9999999999998888754 679999995 579999999999999999998732 1223 234565 78999999
Q ss_pred ecCCCEEEE-EecCcEEEEeCCCC------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 593 HPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 593 sp~g~~l~~-~~dg~I~iwd~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
. ++.++++ +.|+.|++||++.+ .++.++.+ |...+..++|+|++.+|++|+.||.|++|+......+..+
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 7 5667777 69999999999743 56667754 6888999999999999999999999999998877655443
Q ss_pred eccccc-CCC--CccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 666 NLTAYA-QPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 666 ~~~~~~-~~g--~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
...... ..| .......+.+++|+| ++.+|++|+.||.|+||++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 321100 000 011223356999999 8999999999999999986
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-31 Score=247.53 Aligned_cols=271 Identities=16% Similarity=0.225 Sum_probs=221.4
Q ss_pred cCCC-CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 347 SLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 347 ~spd-g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
+.|- |..+|+++.|..|+||+... ...-.|+.. +.+ +|+..|..++|+|.|++|++||.|.++.||.-..+..
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~v-ld~-~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef--- 95 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTV-LDD-GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF--- 95 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCC-CCcEEEEEe-ccc-cchheeeeeeecCCCcEEEEeeccceEEEeecCCCce---
Confidence 4555 88999999999999999884 223556655 444 5999999999999999999999999999997443211
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC---CcEEEEecCCCCCeEEEE
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFI 499 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~ 499 (737)
+++.. .+||...|.|++|+ |++||+|+ |..|-||.+.. ..+...++.|...|..+.
T Consensus 96 ----------------ecv~~--lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 96 ----------------ECVAT--LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ----------------eEEee--eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 12222 23899999999999 99999999 99999999974 357788899999999999
Q ss_pred EcCCC-eEEEEECCCeEEEEecC---CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~---~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
|+|.. .|++++.|.+|++|.-. .-.++.++.+|.+.|.+++|+|.|..+++++.|++|+||...+.
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------- 227 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------- 227 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----------
Confidence 99999 99999999999999866 33678999999999999999999999999999999999986641
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC------ceeEEecCCCCCCCeEEEEEccC-CCEEEEEec
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCK 647 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~------~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~ 647 (737)
+...|. ..+..++|. + ..|++ +.|+.|++|.-... +.+... .+.|...|+++.|.|. .+.|++|++
T Consensus 228 ~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 228 LSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGD 301 (312)
T ss_pred cchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCC
Confidence 333444 688899998 4 45666 69999999986532 111111 2347889999999994 689999999
Q ss_pred CCeEEEEEcC
Q 004683 648 SGHVKVFDTS 657 (737)
Q Consensus 648 dg~I~vwd~~ 657 (737)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999875
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-30 Score=269.36 Aligned_cols=277 Identities=23% Similarity=0.333 Sum_probs=237.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.++|.+++|+|++++|++++.||.+.+|++.+... ..... .|...+..+.|+ ++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~ 64 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------LRTLK--GHTGPVRDVAASADGT 64 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------EEEEe--cCCcceeEEEECCCCC
Confidence 899999999999999999999999999998764221 11111 588889899999 66
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
++++++ +|.|++||+.+++....+..|...+.++.|++++ .+++++.|+.|.+||+.+++....+..|...+.++.|+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 899998 9999999999988888999999899999999999 88888889999999999999999998899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
|++.++++++.|+.|++||+++++ .+..+ ..|. ..+.+++|+|+++.+++ +.++.|++||+++++.+..+
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGK-----CVATL-TGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccc-----cceeE-ecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 999999988889999999998743 23322 2343 58999999999988887 47999999999988888777
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
.. |...+.+++|+|++.++++++.||.|++|++.+++....+..+ ...+ .+++|+| ++.+|++++.|
T Consensus 216 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--------~~~i--~~~~~~~-~~~~l~~~~~d 282 (289)
T cd00200 216 RG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--------TNSV--TSLAWSP-DGKRLASGSAD 282 (289)
T ss_pred hh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--------CCcE--EEEEECC-CCCEEEEecCC
Confidence 54 5779999999999999999888999999999998888777632 3334 4999999 78999999999
Q ss_pred CcEEEEe
Q 004683 702 GRVHVIE 708 (737)
Q Consensus 702 g~V~iWd 708 (737)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-31 Score=277.28 Aligned_cols=243 Identities=17% Similarity=0.196 Sum_probs=207.9
Q ss_pred CCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE
Q 004683 449 AADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 525 (737)
Q Consensus 449 ~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~ 525 (737)
..||...|.++++| ...+++|+++.+++|+..+.++++++... .+.+..|.|.+ ++++|...|.+.+||+.+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 45899999999999 44555666899999999999999999754 78899999999 999999999999999999999
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eec-eee-----eecccCCCCCCCCeEEEEEecCCC
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK--LCS-KFL-----HSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~--~~~-~~~-----~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
+.+.+.|.+.|++++.+||++.+++||.|.+|++||..--.. ... +.+ +++.-. ..|.++.+||||+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~-----ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE-----DDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc-----ccEEEEEEcCCCc
Confidence 999999999999999999999999999999999999753110 000 101 111111 6799999999999
Q ss_pred EEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc
Q 004683 598 HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 598 ~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
+|+++ -|.+++||-+.+.+..-++.+ |.-+|.|+..|||++.+++||.|..|+||-+.-|.+...+-+|
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-------- 591 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-------- 591 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecc--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--------
Confidence 99998 999999999999888778766 7999999999999999999999999999999999998888654
Q ss_pred cCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 677 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 677 ~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+..+ ++|.|-| ...++.++|.||.|+-||-..
T Consensus 592 dDSv--m~V~F~P-~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 592 DDSV--MSVQFLP-KTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred cCce--eEEEEcc-cceeEEEecCcceEEeechhh
Confidence 4444 4999999 788999999999999998764
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.4e-32 Score=249.71 Aligned_cols=292 Identities=15% Similarity=0.172 Sum_probs=245.5
Q ss_pred CCCCCCeEEEEEec---CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 385 NSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 385 ~~h~~~V~~v~fsp---dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+||+.+|..++||| +|=+|++++.|+.-.+- +-++|..+-++. +|.+.|++...
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr---------------------~g~tgdwigtfe--ghkgavw~~~l 67 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR---------------------NGDTGDWIGTFE--GHKGAVWSATL 67 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhc---------------------cCCCCCcEEeee--ccCcceeeeec
Confidence 56999999999995 89999999999876543 344555555444 89999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcce
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 536 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v 536 (737)
+ ....++++ |-+.++||.-+|..+.+| .|..-|.+++|+.|. .|++|+.+..+++||++.. .+...+.+|++.|
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 8 44566666 899999999999998888 466689999999999 9999999999999998764 3567889999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 616 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~ 616 (737)
..+.|....+.+++++.|++||+||.+++.. ++++... .+|+++.++++|+++.++..+.|..||..+..
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~sL~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQSLEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcE-----EEEEecC-----CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 9999999999999999999999999999643 3333333 57999999999999999999999999999999
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
+++.+.. ...|.+.+++|+...+++|++|..++.||..+|+.+..+. .||++ +|. |+.|+| ||...|
T Consensus 217 ~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~g-pVh--cVrFSP-dGE~yA 283 (334)
T KOG0278|consen 217 LLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFG-PVH--CVRFSP-DGELYA 283 (334)
T ss_pred ceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCC-ceE--EEEECC-CCceee
Confidence 9988865 6779999999999999999999999999999999888752 25433 455 999999 899999
Q ss_pred EEECCCcEEEEecCCCce--eeeecCCCC
Q 004683 697 LGLTNGRVHVIEPLESEV--EWGKLPFTD 723 (737)
Q Consensus 697 s~s~Dg~V~iWd~~~~~~--~w~~~~~~~ 723 (737)
+||.||+|++|....++. .|....+.+
T Consensus 284 sGSEDGTirlWQt~~~~~~~~~~~~~~ed 312 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTYGLWKCVKPED 312 (334)
T ss_pred ccCCCceEEEEEecCCCchhhccccChhh
Confidence 999999999999876642 465544443
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=286.14 Aligned_cols=280 Identities=18% Similarity=0.191 Sum_probs=234.5
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...|+|+|+.+++++.++.+++|+...... ..... +.+ |...|.+++|+|||+++++++.|++++|||+..
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~-l~~--h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---- 234 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRE-LSG--HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---- 234 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc--hhhcc-ccc--cccceeeeEECCCCcEEEEecCCceEEEeeccC----
Confidence 356999999999999999999999964221 12222 455 999999999999999999999999999998732
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
.+..+..+. +|...|++++|+ |+.+++|+ |++|++||+.++++.+.+.+|.+.|++++|
T Consensus 235 ----------------~~~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 235 ----------------DGRNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ----------------CCeEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 223334333 899999999999 88999999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCc--EEEEEcCCCcc--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~--~~~~l~~~~~~--v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
++++ .+++++.|+.|++||+.++. ++..+.++... ++++.|+|++.++++++.|+.+++||+..+.. +.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~~- 370 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----VG- 370 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----ee-
Confidence 9999 99999999999999999999 66778776655 99999999999999999999999999998433 22
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVK 652 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs--~dg~I~ 652 (737)
...+|......+.+...++.+.+++++ .|+.|++||..++..+..+.++. ...+..+.++|...++++++ .|+.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceEE
Confidence 222333100245566668899999995 99999999999988888887632 78899999999999999988 689999
Q ss_pred EEEcC
Q 004683 653 VFDTS 657 (737)
Q Consensus 653 vwd~~ 657 (737)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99754
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=247.53 Aligned_cols=276 Identities=15% Similarity=0.178 Sum_probs=227.0
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceee-eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~-~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
..|.|+|.++|+|+.|..|.+|++.+ .|.. ..+.| |.+.|..+.|.+|+..++++|.|.+++.||.+++
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~g-----dceN~~~lkg--HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--- 122 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYG-----DCENFWVLKG--HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--- 122 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccc-----cccceeeecc--ccceeEeeeeccCCCEEEEecCCceEEEEecccc---
Confidence 34889999999999999999999874 2222 22555 9999999999999999999999999998887643
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE-EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~-l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
+...... +|.+.|+++..+ |.. +.+++ ||++++||+.+...++++.. ...++++.
T Consensus 123 ------------------~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 123 ------------------KRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred ------------------eeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 3333322 799999999977 554 45556 89999999998888877743 34688999
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
|..++ .+.+|+-|+.|++||++.+.....+.||..+|+.+..+|+|.++.+-+.|.++++||++..... .+++. +..
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~-if~ 259 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVK-IFQ 259 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEE-Eee
Confidence 99999 9999999999999999999999999999999999999999999999999999999999863221 12233 333
Q ss_pred CCC-CCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 579 GLV-PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 579 ~~~-~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
+|. +-......++|+|+++.+.+ +.|..+++||..+...+..+.+ |.+.|.++.|+|...++.+++.|.+|++=.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG--h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG--HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC--cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 332 00024557899999999988 5999999999988888887755 799999999999999999999999998743
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.8e-30 Score=267.24 Aligned_cols=275 Identities=17% Similarity=0.266 Sum_probs=237.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|++.|.++.|+|..++++++-.+|.|.|||.++... ..++ + -..-+|.+..|- .+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----Vksf-----e-------------V~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----VKSF-----E-------------VSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----eeee-----e-------------ecccchhhheeeeccc
Confidence 789999999999999999999999999999774322 1111 1 245678888888 78
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEE
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~ 541 (737)
++++|+ |..|+||+..+++.+..|.+|..-|.|++.+|.. +++++|.|-+|++||.+.+ .+.+++.||+..|.+++|
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 999999 8999999999999999999999999999999999 9999999999999998864 678999999999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC--CEEEEE-ecCcEEEEeCCCCce
Q 004683 542 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNH 617 (737)
Q Consensus 542 sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~~-~dg~I~iwd~~~~~~ 617 (737)
+| |.+.++++|-|++|++|.+.+ ..+..+ ..+|. ..|+++.+-+.| .+|+++ .|..|+|||.++..|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs-----~~~nfT-l~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGS-----PHPNFT-LEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCC-----CCCcee-eeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99 678899999999999999987 344443 34777 799999998866 688885 788999999999999
Q ss_pred eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 618 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
++++.+ |...|..++|+|.-.++++||+||+++||+..|.++...+.. | ...++ |++.++ ++..++.
T Consensus 220 V~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~------g--leRvW--~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 220 VQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY------G--LERVW--CIAAHK-GDGKIAV 286 (794)
T ss_pred HHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc------C--CceEE--EEeecC-CCCeEEE
Confidence 999976 788999999999999999999999999999999888777653 2 44577 899888 5677888
Q ss_pred EECCCcEEE
Q 004683 698 GLTNGRVHV 706 (737)
Q Consensus 698 ~s~Dg~V~i 706 (737)
|.+.|.|.|
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 888887654
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=274.73 Aligned_cols=288 Identities=17% Similarity=0.235 Sum_probs=242.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
.+..|..++|+|..++++++-.+|.|.+||.+-+. ++..+. .|.++|..++|+ +.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------li~rFd--eHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------LIDRFD--EHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------HHhhhh--ccCCccceeeecCCCC
Confidence 47889999999999999999999999999977322 222112 699999999999 88
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
++++|+ |-.|+||+..+.+++.++.||-+.|..+.|++.- +++++|.|.+|+||+..+++++..+.||.+.|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 7999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceee-----------------------ceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
|....++++|-|.+||+||+..-+... ...+..+..||. ..|+.++|+|.-..+
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 999999999999999999987532211 112233566787 789999999999999
Q ss_pred EEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccC
Q 004683 600 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 678 (737)
Q Consensus 600 ~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~ 678 (737)
++| .|..|++|.+...+.-..-...+|.+.|.++-|+|...++++.|+|++|+|||+.....+..+... +.
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--------nd 293 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--------ND 293 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--------CC
Confidence 995 788999999876554333333458999999999999999999999999999999998888888532 55
Q ss_pred ceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 679 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 679 ~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
..| .++.|| ..+++|+| .|+.+.||.++..
T Consensus 294 RFW--~laahP-~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 294 RFW--ILAAHP-ELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred eEE--EEEecC-Ccceeeee-cCCceEEEEEccc
Confidence 677 788888 67777766 5556777777633
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=241.10 Aligned_cols=301 Identities=14% Similarity=0.159 Sum_probs=235.1
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCC-eeeeeccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~-~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
|.+++.+.+|||||.++|+||.|..|+|.|+..--... ....+ .-=+...+ -++.++. .|.+.|+++.|+ .
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em--~~~~~qa~hPvIRTlY--DH~devn~l~FHPre 184 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEM--ISGDTQARHPVIRTLY--DHVDEVNDLDFHPRE 184 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhh--ccCCcccCCceEeehh--hccCcccceeecchh
Confidence 99999999999999999999999999999987211100 00000 00011111 1333333 599999999999 8
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE---cCCCcce
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI 536 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l---~~~~~~v 536 (737)
..|++|+ |++|+++|.......+.++ .....|.++.|+|.| ++++|....++++||+++-++-..- .+|++.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 8899999 9999999997543333222 334589999999999 9999999999999999998875443 3589999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 615 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~ 615 (737)
+++.+++.|++.++++.||.|++||--+ .+++.++...|.. ..|.+..|..+|+++++ |.|..+++|.+.++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-----~rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-----NRCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc-----HHHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 9999999999999999999999999766 4677777777876 88999999999999998 69999999999999
Q ss_pred ceeEEecCCCCC---CCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 616 NHTSQLVPDKMD---LPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 616 ~~~~~~~~~~h~---~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
+++.++.+.+-. ..-+...|+....|++.-.+ .+.+.-||.+++..+..+.. || ++.+. .+..+| .
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~HSP-~ 407 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVHSP-V 407 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEeCC-C
Confidence 999999875322 22345678877888876544 47899999999877665543 55 44455 899999 6
Q ss_pred CCEEEEEECCCcEEEEecC
Q 004683 692 PNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~ 710 (737)
+.-+.+|++|-..|+|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 8899999999999999643
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5e-29 Score=256.67 Aligned_cols=269 Identities=24% Similarity=0.297 Sum_probs=229.6
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
.++|+++.+++++.||.+++|++.. +..... +.+ |...+..+.|+|+++++++++.||.|.+|++.....
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~----~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~--- 85 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLET----GELLRT-LKG--HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC--- 85 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeC----CCcEEE-Eec--CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc---
Confidence 3789999999999999999999985 222222 444 888999999999999999999999999999774211
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 502 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 502 (737)
..... .|...+.++.|+ ++++++++ +|.|.+||+.+++....+..|...+.+++|+|
T Consensus 86 ------------------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 86 ------------------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred ------------------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 11111 578899999999 67888888 99999999999999999989999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
++ .+++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.+. .+.. ...|.
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~-~~~~~ 219 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-----CLGT-LRGHE 219 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-----eecc-hhhcC
Confidence 99 88888889999999999999888898899999999999999999999999999999998743 2331 22343
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 582 PETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~-dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
..+.+++|+|++.+++++. +|.|++||+.+++....+.. |...+.+++|+|+++++++++.||.|++|+
T Consensus 220 ---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 ---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6899999999988888864 99999999998888888764 678899999999999999999999999996
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=237.62 Aligned_cols=242 Identities=15% Similarity=0.225 Sum_probs=213.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
++.++|.++.|+ |+|.++|+ |.+|++|+...|.+++++.+|...|..++.+.|+ .+++|+.|..|.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99999998 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecC
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 605 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg 605 (737)
+.|.+|...|+.+.|+.+...+++|+.|.++++||.++.. ..|++.+.... ..|.++..+ +..+++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQildea~----D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQILDEAK----DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccchhhhhc----CceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999999999999999999999843 45666443333 578888876 345666 6999
Q ss_pred cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEE
Q 004683 606 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 685 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 685 (737)
+++.||++.|+....+. ..+|++++||+|++.+++++-|+++++.|-.+|+++..+.+| .+ .-+-+.+
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh-------kn-~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH-------KN-MEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc-------cc-ceeeeee
Confidence 99999999998876653 568999999999999999999999999999999999998854 23 3455677
Q ss_pred EEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 686 AAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 686 ~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
+++. ....+++|++||.|++||+..+..
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEecccee
Confidence 7777 467999999999999999988753
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=256.75 Aligned_cols=264 Identities=17% Similarity=0.242 Sum_probs=220.7
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
-|...+++|..|++|+|||.. ...|... |.| |++.|.|+.|. .+.+++||+|.+|+|||++
T Consensus 205 YDD~kiVSGlrDnTikiWD~n----~~~c~~~-L~G--HtGSVLCLqyd--~rviisGSSDsTvrvWDv~---------- 265 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKN----SLECLKI-LTG--HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN---------- 265 (499)
T ss_pred ecchhhhcccccCceEEeccc----cHHHHHh-hhc--CCCcEEeeecc--ceEEEecCCCceEEEEecc----------
Confidence 466678999999999999988 4667665 777 99999999995 4589999999999988766
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCc---EEEEecCCCCCeEEEEEcCCC
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD 504 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~ 504 (737)
+|+++.++. +|...|..+.|+++++++++ |.++.+||+.... +.+.+.||...|+.+.|+..
T Consensus 266 -----------tge~l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 266 -----------TGEPLNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred -----------CCchhhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 455555555 79999999999999999999 9999999997654 33456799999999988533
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 584 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
++++++.|.+|++|++.+++.+.++.+|+..|-|+.+ .|+++++|+.|.+|++||+..| .+++ +..||.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLR-vLeGHE--- 400 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLR-VLEGHE--- 400 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-----HHHH-HHhchH---
Confidence 9999999999999999999999999999999998876 5899999999999999999984 4555 677887
Q ss_pred CCeEEEEEecCCCEEEE-EecCcEEEEeCCCCcee---------EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 585 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT---------SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~---------~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
.-|.++.|. .+.+++ +.||+|++||+.++... .++. .|.+.|..+.|. ...+++++.|.+|.||
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHddtILiW 474 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHDDTILIW 474 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCCCeEEEE
Confidence 789999996 467787 59999999999865422 2222 368889999884 6678999999999999
Q ss_pred EcCCCeeE
Q 004683 655 DTSTLELR 662 (737)
Q Consensus 655 d~~~~~~~ 662 (737)
|...+..-
T Consensus 475 dFl~~~~~ 482 (499)
T KOG0281|consen 475 DFLNGPPS 482 (499)
T ss_pred EcCCCCcc
Confidence 99877543
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.4e-30 Score=247.21 Aligned_cols=272 Identities=15% Similarity=0.204 Sum_probs=233.3
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
++-|-.+++++|+.|++++|||+.+ +.... +++| |-..|..+++|+-..||++++.|+.|+.||+...+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlat----g~Lkl-tltG--hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk---- 226 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLAT----GQLKL-TLTG--HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK---- 226 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEccc----CeEEE-eecc--hhheeeeeeecccCceEEEecCCCeeEEEechhhh----
Confidence 3567889999999999999999994 55544 4888 99999999999999999999999999999887432
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 502 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 502 (737)
++..+. ||-+.|.|++.+ -+.|++|+ |.+++|||+.+...+..+.+|...|..+.+.|
T Consensus 227 -----------------vIR~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 227 -----------------VIRHYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred -----------------hHHHhc--cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 222222 799999999999 88999999 99999999999999999999999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
.+ .+++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..+. .++. ..+|.
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~-----f~~n-lsgh~ 360 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE-----FLQN-LSGHN 360 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----hhhc-ccccc
Confidence 88 99999999999999999999999999999999999999999999999877 68999998753 3332 44665
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC---CC---CCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 582 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---DK---MDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~---~~---h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
..|.+++...||-++..+.+|.+..||.++|...+.... ++ ....|.+.+|...|..|++|..|.+|++|.
T Consensus 361 ---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 361 ---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 789999999988666667889999999998876554421 11 256789999999999999999999999998
Q ss_pred cC
Q 004683 656 TS 657 (737)
Q Consensus 656 ~~ 657 (737)
-.
T Consensus 438 eD 439 (460)
T KOG0285|consen 438 ED 439 (460)
T ss_pred cc
Confidence 54
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=268.23 Aligned_cols=273 Identities=16% Similarity=0.175 Sum_probs=231.6
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..|.|...++.++-..|.|++||... +++..- +.+ |.++|..++|+|++++++|||+|-.|+||+....
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM----~tli~r-Fde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---- 83 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM----GTLIDR-FDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---- 83 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh----hhHHhh-hhc--cCCccceeeecCCCCeEEecCCccEEEEEecccc----
Confidence 34889999999999999999999984 555443 666 9999999999999999999999999999987643
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
.++.++. ||-+.|..+.|+ -.++++++ |.+|+||+..+++++..+.||...|.|..|+
T Consensus 84 -----------------rclftL~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 84 -----------------RCLFTLL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred -----------------eehhhhc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 3444444 899999999999 77999999 8999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCC-----------------------------cEEEEEcCCCcceEEEEEeCCCCEEEEE
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTK-----------------------------KTKAKLKGHQNRITCLAYSLSLNVLVSS 551 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~-----------------------------~~~~~l~~~~~~v~~l~~sp~g~~l~s~ 551 (737)
|.. .++++|-|.+|++||+..- -..+.+.||...|+-++|+|.-..+++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 988 9999999999999998521 0124568899999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCe
Q 004683 552 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 630 (737)
Q Consensus 552 s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v 630 (737)
+.|+.|++|.+...+ ...+. ...+|. +.|.++.|+|....+++ |.|++|+|||+...+.++++.. .....
T Consensus 225 ~DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRF 295 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRF 295 (1202)
T ss_pred CCcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeec--cCCeE
Confidence 999999999987622 12233 345777 79999999999999998 7999999999999999999965 36778
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 631 TYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 631 ~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+.++-+|..+++++|.+.| +.||.++
T Consensus 296 W~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred EEEEecCCcceeeeecCCc-eEEEEEc
Confidence 9999999999888876544 4455554
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=244.69 Aligned_cols=290 Identities=13% Similarity=0.138 Sum_probs=240.4
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.. |++.|.+++.+|+.++++|||.|....+|+..++ .....+. +|.+.|+++.|
T Consensus 60 F~~--H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---------------------e~~~elt--gHKDSVt~~~F 114 (399)
T KOG0296|consen 60 FDK--HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---------------------EFAGELT--GHKDSVTCCSF 114 (399)
T ss_pred hhh--cCCceEEEEeCCCCceEEecCCCceEEEEEccCC---------------------cceeEec--CCCCceEEEEE
Confidence 555 9999999999999999999999999988877643 2222222 89999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
+ |.+||+|. +|.|+||...++.....+......+.=+.|+|.+ .|++|+.||.+.+|.+.++...+.+.||..+++
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT 194 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence 9 99999999 9999999999999988887666778889999999 999999999999999999888899999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCc
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 616 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~ 616 (737)
+=.|.|+|+.++++..||+|++||+.++. ++..+..... ....++.++..+..++.| .++.+++-+..+|+
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-----p~~~~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQ-----PLHKITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCc-----eeEEeccccc---CcCCccccccccceeEeccCCccEEEEccccce
Confidence 99999999999999999999999999963 4443332221 467788899888888875 88999999988888
Q ss_pred eeEEecCC------CCC---CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 617 HTSQLVPD------KMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 617 ~~~~~~~~------~h~---~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
.+....+. .+. ..|-++.||..-.+.|+|+-||+|.|||+.+..+.+.+.. . ..|+.+.|
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---------e--~~V~~l~w 335 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---------E--DGVTKLKW 335 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC---------C--CceEEEEE
Confidence 87766520 122 3444555666678889999999999999999888777642 2 22569999
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCceeee
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~~~w~ 717 (737)
-+ ..+|++++.||.|+.||.++|+.+..
T Consensus 336 ~~--t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 336 LN--TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred cC--cchheeeccCceEEeeeccccceEEE
Confidence 88 47899999999999999999987643
No 52
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=253.75 Aligned_cols=296 Identities=20% Similarity=0.235 Sum_probs=227.5
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+++ |+..|.++++.|.|-+|++||.|.+|++||+..-.. ......+... .-...|.+++|
T Consensus 163 l~h--gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----------------s~~~fr~l~P--~E~h~i~sl~y 222 (641)
T KOG0772|consen 163 LKH--GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----------------SMRSFRQLQP--CETHQINSLQY 222 (641)
T ss_pred ccC--CceEEEEeeecCCCceeeeccccceEEEEecccccc----------------cchhhhccCc--ccccccceeee
Confidence 666 899999999999999999999999999999875321 1111111111 34567899999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEE------------ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLAT------------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~ 524 (737)
+ |+.|++.+ ....+++|-........ .+||...++|.+|+|+. .+++++.||++++||+..-+
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 9 77766666 88999999764433322 25888999999999999 99999999999999987643
Q ss_pred E-EEEEc-----CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 525 T-KAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 525 ~-~~~l~-----~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
. ...++ +..-++++++|+|+|+.+|+|+.||+|.+||..+... ++...+...|.+ ...|++++||++|++
T Consensus 303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~-g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP-GQDITSISFSYDGNY 378 (641)
T ss_pred hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC-CCceeEEEeccccch
Confidence 2 23332 3456789999999999999999999999999866332 222224455551 137999999999999
Q ss_pred EEE-EecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEEcCCCeeEEEEecccc
Q 004683 599 LLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 599 l~~-~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~------dg~I~vwd~~~~~~~~~~~~~~~ 670 (737)
|++ |.|+++++||++.. +++.+..+-....+-+.++|||+.++|++|+. .|.+++||..+.+.+..+...
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 999 89999999999874 45665554444566788999999999999875 478999999999988888642
Q ss_pred cCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE-ecCCC
Q 004683 671 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI-EPLES 712 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW-d~~~~ 712 (737)
...|..+.||| .-+.|..|+.||+++|| |....
T Consensus 457 --------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 457 --------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred --------CceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 24455899999 67788888899999884 55443
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.6e-28 Score=287.43 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=221.4
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCc---eeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeecc
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---CRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQ 418 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~---~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~ 418 (737)
..+.|+|+|+++|+|+.|++|+||+.......+. .....+. +...|.+++|+| ++.+|++++.||+|++||+.
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 3456999999999999999999999763210111 1111122 356899999987 47899999999999999876
Q ss_pred CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCC
Q 004683 419 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 494 (737)
Q Consensus 419 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~ 494 (737)
++ ..+..+. +|.+.|++++|+ +.+|++|+ ||+|++||+.++..+..+..+ ..
T Consensus 564 ~~---------------------~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 564 RS---------------------QLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CC---------------------eEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 32 2222222 699999999997 67899999 999999999999988888755 57
Q ss_pred eEEEEEcC-CC-eEEEEECCCeEEEEecCCCc-EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eec
Q 004683 495 ATYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCS 570 (737)
Q Consensus 495 v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~-~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~-~~~ 570 (737)
|.++.|++ ++ .+++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||++.... ...
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 88999954 57 99999999999999998765 567788999999999997 678999999999999999975311 011
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEec-----------CCCCCCCeEEEEEccC
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCD 638 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~-----------~~~h~~~v~~~~~sp~ 638 (737)
.++. ...+|. ..+.+++|+|++.+|+++ .|+.|++|+.....++..+. ...+...|.+++|+|+
T Consensus 699 ~~l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 699 TPLH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cceE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 2344 244565 688999999999999985 89999999987665443321 1223567999999999
Q ss_pred CCEEEEEecCCeEEEEEc
Q 004683 639 GKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 639 ~~~l~sgs~dg~I~vwd~ 656 (737)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999996
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.9e-30 Score=259.47 Aligned_cols=290 Identities=13% Similarity=0.146 Sum_probs=237.6
Q ss_pred cceeeccCCCCCcceeeeCCCCccccccCC-CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec
Q 004683 320 RPLDASSGDDSNDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 398 (737)
Q Consensus 320 ~~l~~~~gh~~~~s~l~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp 398 (737)
.-.++++||..-.+++ .|+| .+.++++++.|+.|+||++-. .+.|.+. +.| |..+|..++|++
T Consensus 205 k~~~~~~gH~kgvsai----------~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrt-f~g--H~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAI----------QWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRT-FKG--HRKPVRDASFNN 268 (503)
T ss_pred hheeeccCCccccchh----------hhccceeeEEEecCCCceEEEEEEec---Ccceehh-hhc--chhhhhhhhccc
Confidence 3445677777755432 2677 899999999999999999986 5788776 777 999999999999
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C-CEEEEEe-CCeE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKI 474 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~-~~l~s~s-dg~i 474 (737)
+|..++|+|.|+.+++||++ +|.++..+. ....++|+.|. + +.+++|+ |+.|
T Consensus 269 ~g~~fLS~sfD~~lKlwDtE---------------------TG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTE---------------------TGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cCCeeeeeecceeeeeeccc---------------------cceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 99999999999999887766 444444332 45678899999 4 6777777 9999
Q ss_pred EEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc-CCCcceEEEEEeCCCCEEEEEe
Q 004683 475 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 475 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~-~~~~~v~~l~~sp~g~~l~s~s 552 (737)
+.||+.+++.++.+..|-+.|..+.|-++| .+++.+.|+++++|+.+.+..++... .+.....++..+|++.+++.-+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 999999999999999999999999999999 99999999999999998877665443 2345677899999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeE
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 631 (737)
.|+.|.++.+...-. ........||.- .+.-..+.|||||.+|++| .||.+.+||.++-+.+..++. |...+.
T Consensus 405 ~dN~i~ifs~~~~~r---~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~ci 478 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFR---LNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQPCI 478 (503)
T ss_pred cCceEEEEecccccc---cCHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcceE
Confidence 999999998764211 111223455541 1455679999999999997 999999999999999888876 689999
Q ss_pred EEEEccC-CCEEEEEecCCeEEEEE
Q 004683 632 YATYSCD-GKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 632 ~~~~sp~-~~~l~sgs~dg~I~vwd 655 (737)
.+.|+|. ...||+++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999995 46789999999999996
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=270.54 Aligned_cols=268 Identities=16% Similarity=0.233 Sum_probs=210.4
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc----------------cccc----------cceee--------
Q 004683 386 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEE----------ENVNM-------- 431 (737)
Q Consensus 386 ~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~----------------~~g~----------~~~~~-------- 431 (737)
.|.+.||++.||+||+|||+||.|+.|+||.+...+. ..+. .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 3999999999999999999999999999999887222 0000 00000
Q ss_pred ee-EEeecCC----CeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC
Q 004683 432 ES-QLYQPSS----KLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 504 (737)
Q Consensus 432 ~~-~l~~~~~----~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 504 (737)
.+ .+..... .+++..+ .||.+.|..+.|| +++|++++ |.+|++|++...++++.| .|..-|+|++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhh--hccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccC
Confidence 00 0011100 0111222 2899999999999 99999999 999999999999999998 688999999999977
Q ss_pred --eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 505 --LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 505 --~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
+|++|+-||.|+||++...+.+.-.. -..-|++++|.|||+..++|+.+|.+++|+....+......+. ...+...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~ 499 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKK 499 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccc
Confidence 99999999999999998776655444 4478999999999999999999999999999986655544444 1111111
Q ss_pred CCCCeEEEEEecCCC--EEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 583 ETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~--~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
....|+.+.|.|... .|+++.|..|+|||.+...++..+++......-....|+.||++|++|++|..|+||+...
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 114799999998653 6777899999999999999999998765566677899999999999999999999999743
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-30 Score=249.45 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=222.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 466 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 466 (737)
...+|.|+.+. ...+++|..|++|+|||..+. .+...+. ||++.|.|+.|..+.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~---------------------~c~~~L~--GHtGSVLCLqyd~rvi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL---------------------ECLKILT--GHTGSVLCLQYDERVI 250 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH---------------------HHHHhhh--cCCCcEEeeeccceEE
Confidence 35789999984 345899999999999986642 2333333 8999999999998899
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCc---EEEEEcCCCcceEEEEEe
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~~~~~v~~l~~s 542 (737)
++|+ |.+|++||+++|+++.++-+|...|..+.|+. |++++++.|.++.+||+.+.. +.+.+.||...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence 9999 99999999999999999999999999999863 489999999999999987653 345678999999999986
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~ 621 (737)
.+++++++.|.+|++|++.+. ..++ ...+|. ..|-|+.+ .|+++++| +|.+|++||+..|.+++.+
T Consensus 330 --~kyIVsASgDRTikvW~~st~-----efvR-tl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTSTC-----EFVR-TLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred --cceEEEecCCceEEEEeccce-----eeeh-hhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH
Confidence 469999999999999999994 4444 455666 57777766 47888884 9999999999999999999
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc--CCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--QPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+ |..-|.++.|. .+.+++|+.||+|+|||+.++..-......... ... +.+.+. .+.|. ...+++++
T Consensus 397 eG--HEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-hsgRVF--rLQFD---~fqIvsss 466 (499)
T KOG0281|consen 397 EG--HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-HSGRVF--RLQFD---EFQIISSS 466 (499)
T ss_pred hc--hHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh-ccceeE--EEeec---ceEEEecc
Confidence 76 68889999984 678999999999999999887533211100000 001 133344 88884 46899999
Q ss_pred CCCcEEEEecCCCc
Q 004683 700 TNGRVHVIEPLESE 713 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~ 713 (737)
.|.+|-|||..++-
T Consensus 467 HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 467 HDDTILIWDFLNGP 480 (499)
T ss_pred CCCeEEEEEcCCCC
Confidence 99999999998764
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.3e-28 Score=227.49 Aligned_cols=278 Identities=14% Similarity=0.185 Sum_probs=233.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---C
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~ 463 (737)
|...|.+|+|+.+|..|++|+.|+++.+|++..... .......+|.+.|-.++|+ .
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCCcchhhheeCCCCC
Confidence 899999999999999999999999999999874321 1111122799999999999 7
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEE
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~ 541 (737)
..+++++ |.+|++||+.++++........+.+ .+.|+|+| ++++++.|..|...|.++.+.+...+ ....++-++|
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w 155 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISW 155 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeee
Confidence 7888888 9999999999999999887666666 57899999 99999999999999999888776665 4566888999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEE
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~ 620 (737)
+.++.+++.....|.|.|..... .++++++. .|. ....||.|+|+|+++|+| .|-.+.+||++..-+++.
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~si~-AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPS-----LKPVQSIK-AHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERC 226 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccc-----cccccccc-cCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhee
Confidence 98888888888889999988776 45566444 444 678899999999999995 899999999998888888
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
+.. +.-+|..++||.||++||+||+|..|-|=++++|..++.++. .++.+ .|+||| ...+||-+.+
T Consensus 227 isR--ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~d 292 (313)
T KOG1407|consen 227 ISR--LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYACD 292 (313)
T ss_pred ecc--ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEec
Confidence 864 689999999999999999999999999999999999999864 44555 899999 6788888775
Q ss_pred C---------CcEEEEecC
Q 004683 701 N---------GRVHVIEPL 710 (737)
Q Consensus 701 D---------g~V~iWd~~ 710 (737)
| |+|+++-+.
T Consensus 293 dk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 293 DKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCCCccccccceeEEecCC
Confidence 5 567776554
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=253.43 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=194.7
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
+...|.+.-+++++|+.|..|++++.++. .+... +.. |.+-|.|++.+|..++++|+|+|-+|++||++..
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~---ekV~~--FeA--H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-- 129 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYNTG---EKVKT--FEA--HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-- 129 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEecccc---eeeEE--eec--cccceeeeeecCCCCeEEecCCccEEEEeeccCc--
Confidence 34447788899999999999999999862 33333 555 9999999999999999999999999999998742
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
|. +.+. .+||...|.+++|+ .+.+|+++ |++|+||.+.+..+..++++|..+|+|+
T Consensus 130 -------------wa-----~~qt--feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 130 -------------WA-----CEQT--FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred -------------ee-----eeeE--EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 22 2222 23899999999999 78999999 9999999999999999999999999999
Q ss_pred EEcCCC---eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004683 499 ILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 499 ~~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
.+-+-| ++++|+.|.+|+|||.++.+|++++.||...|..+.|+|.-..+++||.||+|++|+..+-+. ..+
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-----E~t 264 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL-----EKT 264 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-----hhh
Confidence 998877 999999999999999999999999999999999999999999999999999999999887322 221
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 612 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~ 612 (737)
+.-+- ..+++++-.+.+..+++|.|....+..+
T Consensus 265 Ln~gl----eRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 265 LNYGL----ERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred hhcCC----ceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 22222 6799999888888888876544444443
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=8.5e-29 Score=241.72 Aligned_cols=273 Identities=14% Similarity=0.165 Sum_probs=222.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C-
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G- 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~- 463 (737)
|.+.|.++.-. ++++++|+.||++++|+... +...... ||.++|.+++|. +
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----------------------k~~~~~~--Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----------------------KSIKTIV--GHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC----------------------ceEEEEe--cCCcceeeeEEEecCC
Confidence 88999999988 78999999999999999652 2222222 899999999998 3
Q ss_pred --CEEEEEe-CCeEEEEECCCCcEE----EEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC--------------
Q 004683 464 --SHLFSAS-GGKISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-------------- 521 (737)
Q Consensus 464 --~~l~s~s-dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~-------------- 521 (737)
..|++++ |.++++|-++.+... +.-.||...|.++...++| .+++|+.|..|.+|+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 3599999 999999998776533 3334999999999999999 99999999999999932
Q ss_pred -----------CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEE
Q 004683 522 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 522 -----------~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
++.++.++.||..+|.++.|++ ...+.+++.|.+|+.||+.++.. ..++..+ ....++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~~~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KSTLTTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eeeeecC-----cceeEe
Confidence 1235667899999999999998 66899999999999999998543 2223333 679999
Q ss_pred EEecCCCEEEE-EecCcEEEEeCCCCc---eeEEecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCe-eEEE
Q 004683 591 QFHPDQIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLE-LRCQ 664 (737)
Q Consensus 591 ~~sp~g~~l~~-~~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~-~~~~ 664 (737)
..+|..+.|++ |.|..|++||.+++. ..+++.+ |.+.|.++.|+|. ...+++|+.|+++++||+++.+ ++..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999998 599999999998753 3345544 7889999999994 5667899999999999999876 7777
Q ss_pred EecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 665 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 665 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+..| +.. ++++.|+. +.++++||.|.+|+|+.-.
T Consensus 385 I~~h--------~DK--vl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAGH--------NDK--VLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccC--------Cce--EEEEeccC--CceEEeccCcceEEEeccc
Confidence 7643 333 55999985 6899999999999998653
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-28 Score=238.56 Aligned_cols=270 Identities=16% Similarity=0.244 Sum_probs=221.1
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEeeccCCccccccc
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQSLEEE 427 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg---~~L~s~s~dg~i~iWd~~~~~~~~g~~ 427 (737)
++++.+|+.||.+++|+.. |.+... +.| |+++|.+++|--.. ..++++|.|.++++|.+..+..
T Consensus 115 ~~~IltgsYDg~~riWd~~-----Gk~~~~-~~G--ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~----- 181 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-----GKSIKT-IVG--HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN----- 181 (423)
T ss_pred CceEEEeecCCeeEEEecC-----CceEEE-Eec--CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-----
Confidence 7899999999999999987 444444 566 99999998886433 3599999999999998764322
Q ss_pred ceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC-----------------------
Q 004683 428 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----------------------- 481 (737)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~----------------------- 481 (737)
.........||...|.+++.. |..+++|+ |.++.+|+..+
T Consensus 182 --------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 182 --------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred --------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 111111112799999999987 99999999 99999999321
Q ss_pred --CcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 004683 482 --FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 559 (737)
Q Consensus 482 --~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~l 559 (737)
+.++-.+.+|...|.++.|++.+.+++++.|.+|+.||+.++..+.++.+ ...++|+..+|..+++++|+.|..+++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 22455778999999999999855999999999999999999999888875 567999999999999999999999999
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--EecCcEEEEeCCCCc-eeEEecCCCCCCCeEEEEEc
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s 636 (737)
||.+++. ...+..-..+|. +.|.++.|+|...+.++ +.|+++++||+++.+ ++..+.+ |...|.++.|+
T Consensus 327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~ 398 (423)
T KOG0313|consen 327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN 398 (423)
T ss_pred cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc--CCceEEEEecc
Confidence 9999853 233333456787 79999999999877665 499999999999877 8888865 78999999996
Q ss_pred cCCCEEEEEecCCeEEEEEcC
Q 004683 637 CDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 637 p~~~~l~sgs~dg~I~vwd~~ 657 (737)
++..+++|+.|++|+|+.-.
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 56689999999999998643
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=249.49 Aligned_cols=279 Identities=15% Similarity=0.188 Sum_probs=232.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.+.|..+.|-++...|++|+.|..|++|++..+.. ..+..+. |..++|+++.|. +.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLa--Gs~g~it~~d~d~~~~ 232 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLA--GSLGNITSIDFDSDNK 232 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhh--ccCCCcceeeecCCCc
Confidence 899999999999988899999999999999775332 1112222 567889999999 77
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
++++++ |+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|+.||+..+.|.+++- ..+.+..|..+
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 777777 9999999999999999999999999999998888 89999999999999999988887765 24556666665
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
...+++|-.|+.|++||.++..+... ++.+ +.|+++..+++|..+++ +.|.++.+.|+++......+
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~s-----v~~g-----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRS-----VPLG-----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeE-----eecC-----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 56788999999999999998544333 3333 78999999999998888 59999999999999888887
Q ss_pred cCCCC--CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 622 VPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 622 ~~~~h--~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
...+. ....+.++|||++.|+++||.||.|+||++.++++...+... .....+++++|+| -|..+++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--------~s~~aI~s~~W~~-sG~~Llsad 450 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--------TSNAAITSLSWNP-SGSGLLSAD 450 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--------CCCcceEEEEEcC-CCchhhccc
Confidence 65332 445889999999999999999999999999999998888643 1111355999999 689999999
Q ss_pred CCCcEEEEe
Q 004683 700 TNGRVHVIE 708 (737)
Q Consensus 700 ~Dg~V~iWd 708 (737)
.++.+.+|.
T Consensus 451 k~~~v~lW~ 459 (459)
T KOG0288|consen 451 KQKAVTLWT 459 (459)
T ss_pred CCcceEecC
Confidence 999999993
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.5e-27 Score=224.65 Aligned_cols=284 Identities=15% Similarity=0.140 Sum_probs=223.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
..+.|.++.|+++|.+|++++.|.++++||..++.. ..... .+.-.|..++|. .+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------~~ti~--skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------VKTIN--SKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------eeEee--cccccccEEEEecCCc
Confidence 467899999999999999999999999988764322 22111 345567777777 44
Q ss_pred EEEEEe---CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 465 HLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 465 ~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
.++.++ |.+|+..++.+.+.++.|.||...|.+++.+|-+ .+++++.|++|++||++..++...+.. ..-..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCccee
Confidence 444443 7899999999999999999999999999999999 999999999999999998888777653 2334578
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeec--ccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCce
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF--QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 617 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~ 617 (737)
|+|+|-++|++.....|++||++.-.. .+..++ ..+.. ...+.+.|||+|++++.+ ..+.+++.|.-+|..
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 999999999999888999999997432 222222 21222 688999999999999986 778899999999999
Q ss_pred eEEecCCCCCC-CeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 618 TSQLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 618 ~~~~~~~~h~~-~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
..++....... --.+.+|+||++++++|+.||+|.+|++++|..+.++.+. .... +.++.|+| .-.++|
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~--~~~~~fnP-~~~mf~ 291 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGP--VSCVRFNP-RYAMFV 291 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCC--ccccccCC-ceeeee
Confidence 88887643333 2257889999999999999999999999999999988742 1223 34888999 445555
Q ss_pred EEECCCcEEEEecCCCc
Q 004683 697 LGLTNGRVHVIEPLESE 713 (737)
Q Consensus 697 s~s~Dg~V~iWd~~~~~ 713 (737)
++ +..+.+|-+...+
T Consensus 292 sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 292 SA--SSNLVFWLPDEDA 306 (311)
T ss_pred ec--CceEEEEeccccc
Confidence 54 5679999886543
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.5e-29 Score=229.91 Aligned_cols=287 Identities=14% Similarity=0.140 Sum_probs=236.0
Q ss_pred eccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCE
Q 004683 324 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF 402 (737)
Q Consensus 324 ~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~ 402 (737)
+..||.. ++- +++.+ ..|+|-+|++++.|+.-.+-+-++ +.-.-. +.| |.+.||......+-..
T Consensus 9 ~c~ghtrpvvd-l~~s~-------itp~g~flisa~kd~~pmlr~g~t----gdwigt-feg--hkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 9 TCHGHTRPVVD-LAFSP-------ITPDGYFLISASKDGKPMLRNGDT----GDWIGT-FEG--HKGAVWSATLNKNATR 73 (334)
T ss_pred EEcCCCcceeE-EeccC-------CCCCceEEEEeccCCCchhccCCC----CCcEEe-eec--cCcceeeeecCchhhh
Confidence 3457777 555 44444 789999999999999987776553 443333 777 9999999999999999
Q ss_pred EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEEC
Q 004683 403 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 479 (737)
Q Consensus 403 L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~ 479 (737)
-|+++.|-+.+|||.-+ |..+.++ .|..-|.+++|+ .++|++|+ +..++|||+
T Consensus 74 aasaaadftakvw~a~t-----gdelhsf-------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVT-----GDELHSF-------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhcccchhhhhhhhh-----hhhhhhh-------------------hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 99999999998888653 3333333 488999999999 78999999 899999999
Q ss_pred CCC-cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcE
Q 004683 480 ETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 480 ~~~-~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I 557 (737)
+.. .+...+.+|.+.|..+.|.... .|++++.|++|++||.+++..++++. ...+|+++.++++|+++.++ ..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCcee
Confidence 874 3566788999999999999888 88998999999999999999999987 57889999999999876654 56789
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
.+||..+...++...+ . ..|.+..++|+...+++ +.|..++.||..++..+..+. .+|.++|.++.|+
T Consensus 208 ~Fwdaksf~~lKs~k~-----P-----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFS 276 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-----P-----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFS 276 (334)
T ss_pred EEeccccccceeeccC-----c-----cccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEEC
Confidence 9999998443333222 1 57999999999877777 599999999999999988862 2478999999999
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 637 CDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 637 p~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
|+|...++||+||+|++|....++..
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999998877644
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.2e-28 Score=266.54 Aligned_cols=308 Identities=18% Similarity=0.191 Sum_probs=235.6
Q ss_pred cccCCCCCEEEEEe--cCCeEEEeecCccCCCCc-------eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEe
Q 004683 345 STSLPDADSAVCAK--SLEKSVNLKLQLINEPSE-------CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 415 (737)
Q Consensus 345 ~~~spdg~~la~~s--~dg~v~iW~~~~~~~~~~-------~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iW 415 (737)
++.+|||..+|+|+ .|+.++||+.+....... .....+.. |.+.|.|+.|||||+|||+||+|+.|.||
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~--h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD--HDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc--ccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 44889999999999 999999999774311000 00111233 99999999999999999999999999999
Q ss_pred eccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcEEEEecCCCCCe
Q 004683 416 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIA 495 (737)
Q Consensus 416 d~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v 495 (737)
..... ....+..+ + .| .=+++..+.+..+.+|+..|
T Consensus 97 ~~~~~----------------------------------~~~~~fgs------~-g~---~~~vE~wk~~~~l~~H~~DV 132 (942)
T KOG0973|consen 97 ERAEI----------------------------------GSGTVFGS------T-GG---AKNVESWKVVSILRGHDSDV 132 (942)
T ss_pred eeccc----------------------------------CCcccccc------c-cc---ccccceeeEEEEEecCCCcc
Confidence 85520 00000000 0 00 01234567888899999999
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
..++|+|++ ++++++.|++|.+||..+.+.+..+.+|.+.|-.++|.|-|+++++-+.|++|++|++.++..... +.
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It 210 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--IT 210 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--ec
Confidence 999999999 999999999999999999999999999999999999999999999999999999999776433221 11
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE--Eec---CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC-----CC----
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS--IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-----GK---- 640 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~--~~d---g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~-----~~---- 640 (737)
-+..+.+.......+.|||||.+|++ +.+ ..+.|.+-.+.+.-..+.+ |..++.++.|+|. .+
T Consensus 211 -~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 211 -KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred -cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCc
Confidence 11122222256888999999999998 322 3688888877777777766 6889999999962 12
Q ss_pred --------EEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 641 --------CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 641 --------~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.+|+||.|++|-||.....+++..+... . +.. +.+++|+| ||..|.+||.||+|.+..++..
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f-----~~S--I~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--F-----NKS--IVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--h-----cCc--eeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 5788999999999999877776654311 1 223 45999999 8999999999999999999875
Q ss_pred c
Q 004683 713 E 713 (737)
Q Consensus 713 ~ 713 (737)
+
T Consensus 358 E 358 (942)
T KOG0973|consen 358 E 358 (942)
T ss_pred H
Confidence 4
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.6e-28 Score=226.16 Aligned_cols=288 Identities=15% Similarity=0.185 Sum_probs=224.7
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |..+++.+.|+.+|.+|.+|+.|.++.||-..+ |+.+-++. ||.+.|+|+..
T Consensus 6 l~G--HERplTqiKyN~eGDLlFscaKD~~~~vw~s~n---------------------GerlGty~--GHtGavW~~Di 60 (327)
T KOG0643|consen 6 LQG--HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN---------------------GERLGTYD--GHTGAVWCCDI 60 (327)
T ss_pred ccc--CccccceEEecCCCcEEEEecCCCCceEEEecC---------------------Cceeeeec--CCCceEEEEEe
Confidence 666 999999999999999999999999999886442 33333333 89999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-----CCeEEEEecC-------CCcE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPC-------TKKT 525 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-----dg~I~vwd~~-------~~~~ 525 (737)
+ .+++++|+ |.++++||+++|+++..++. ...|..+.|+++| +++.... .+.|.++|++ +..+
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 9 88999999 99999999999999999864 4578999999999 5555443 3479999988 4456
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Eec
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 604 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d 604 (737)
...+..+.+.++.+.|.|-+++|++|..||.|..||++++.. .+. -...|. ..|+.++++|+..++++ +.|
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccC
Confidence 777777889999999999999999999999999999998532 222 233455 68999999999999999 599
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe--EEEEEcCCCeeEEEEeccc-----ccCCCCcc
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINLTA-----YAQPGTIS 677 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~--I~vwd~~~~~~~~~~~~~~-----~~~~g~~~ 677 (737)
.+-++||..+..+++++.. ..+|++.+++|...+++.|+.-.- |.-=+.+.|+-..++-... -...|| -
T Consensus 212 ttakl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-F 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-F 287 (327)
T ss_pred ccceeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-c
Confidence 9999999999999999976 789999999997777776553222 2222222222111111000 011243 4
Q ss_pred CceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 678 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 678 ~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
++++ +++||| +|+..++|++||.||+....
T Consensus 288 GPIN--svAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 288 GPIN--SVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cCcc--eeEECC-CCcccccCCCCceEEEEEec
Confidence 5576 999999 89999999999999997654
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.6e-27 Score=247.22 Aligned_cols=303 Identities=14% Similarity=0.156 Sum_probs=247.7
Q ss_pred ecCCeEEEeecCccCC----CCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeee
Q 004683 358 KSLEKSVNLKLQLINE----PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 433 (737)
Q Consensus 358 s~dg~v~iW~~~~~~~----~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~ 433 (737)
-.++++..+.++.... +.....+.+.| |...|.+++||.|...++||+. +.++||+..
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G--HR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~--------------- 402 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG--HRSDVRSLCVSSDSILLASGAG-ESIKIWNRD--------------- 402 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc--chhheeEEEeecCceeeeecCC-CcEEEEEcc---------------
Confidence 6678888887765111 12223345666 9999999999999987777654 678777655
Q ss_pred EEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE
Q 004683 434 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 509 (737)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg 509 (737)
+.+++.+. ..+.+.+..|. ++++++|. .|.+.+||+.+...+.++++|++.|++++.+||+ .+++|
T Consensus 403 ------t~kciRTi----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 403 ------TLKCIRTI----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred ------CcceeEEe----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 44444433 23477788888 77899998 8999999999999999999999999999999999 99999
Q ss_pred ECCCeEEEEecCC-----CcEEE--------EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 510 FDDSSILVHCPCT-----KKTKA--------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 510 s~dg~I~vwd~~~-----~~~~~--------~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
|.|.+|++||..- |...+ ++. -+..|.|+.+||||++++++--|.+|++|-+++-+ ..+ -
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK----Ffl--s 545 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK----FFL--S 545 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee----eee--e
Confidence 9999999999641 21111 122 35679999999999999999999999999998821 112 2
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
.-||. -||.|+.+|||++.+++ |.|..|++|-+.-|.|.+.+.. |...|.++.|-|...+++++|.|+.|+-||
T Consensus 546 LYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 546 LYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--HDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc--ccCceeEEEEcccceeEEEecCcceEEeec
Confidence 34676 79999999999999999 5999999999999999998865 789999999999999999999999999999
Q ss_pred cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 656 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
-..-+.+..+.+| ...++ |++.+| +|.+++++|.|.+|++|.-..
T Consensus 621 g~kFe~iq~L~~H--------~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 621 GEKFEEIQKLDGH--------HSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhhheeeccc--------hheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 9999999998754 44577 899999 899999999999999999765
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=256.62 Aligned_cols=271 Identities=20% Similarity=0.217 Sum_probs=231.3
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
.+..+++++.|+++++|+... +......+.| |.+.|++++|..-+.+|++|+.|.+++|||..
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~----~~~i~~~l~G--H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~----------- 279 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNN----GYLILTRLVG--HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS----------- 279 (537)
T ss_pred ecCeEEecCCCceeEEeeccc----ceEEEeeccC--CCCCceeEEEecCCCEEEEEecCCcEEeEecC-----------
Confidence 367899999999999999884 5555555777 99999999999888899999999999988755
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 507 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~ 507 (737)
+|.+...+. +|.+.|.++...+.++++|+ |.+|++|++.++.++..+.+|.+.|.++..+ + .++
T Consensus 280 ----------sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 280 ----------TGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred ----------CCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEE
Confidence 444555444 79999999888888888888 9999999999999999999999999999997 5 999
Q ss_pred EEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe
Q 004683 508 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 587 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v 587 (737)
+|+.|++|++||+.+++++.++++|...|.++.+.+. ..+++|+.|++|++||+++.. +++. ...+|. .-+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v 416 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLV 416 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---ccc
Confidence 9999999999999999999999999999999988766 899999999999999999841 4555 344554 455
Q ss_pred EEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 588 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 588 ~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
..+. ..+++|++ +.|++|++||..++++++++.+. |...|..+++. ...+++++.||++++||+.+++....+
T Consensus 417 ~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 417 SSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 4443 34678888 59999999999999999999774 56788888876 567889999999999999999988766
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=246.25 Aligned_cols=350 Identities=14% Similarity=0.157 Sum_probs=267.6
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC-----------CCEEEEEECCC
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQTA 410 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd-----------g~~L~s~s~dg 410 (737)
..+..|.|..+++.+.-.|..++|||+...+..++|... +- |...||.+.--|- ...+++||.|+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~-ly---HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM-LY---HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeee-ee---ccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 345558889999999999999999999987777888765 22 8999999887661 12489999999
Q ss_pred cEEEeeccCCcc----cccccceeeeeEEeecCCCeeee---------ecc-CCCCCCCeEEEEEe--CCEEEEEe-CCe
Q 004683 411 THKLWKWQSNKQ----SLEEENVNMESQLYQPSSKLVMT---------NDI-AADPKDSISCFALR--GSHLFSAS-GGK 473 (737)
Q Consensus 411 ~i~iWd~~~~~~----~~g~~~~~~~~~l~~~~~~~~~~---------~~~-~~~h~~~V~~v~~s--~~~l~s~s-dg~ 473 (737)
+|++|++..... ....+.+.....+|.-.+...+. ... .-+....+.+++.+ |++||+|. .|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 999999986322 00000011100111111111100 000 00345679999999 99999999 899
Q ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEcCCC----eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeCCC--C
Q 004683 474 ISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL--N 546 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~----~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g--~ 546 (737)
++||++..-+....+..|+..|.|+.++... +||+++.|..|.+||+... ..++++.+|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 9999999988888999999999999998643 8999999999999998643 5678899999999999998877 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeecccC-CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC
Q 004683 547 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 624 (737)
Q Consensus 547 ~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~ 624 (737)
.+++++.|+.|.+--.+... ...+ ++.+ |.-+...++.++..|+.+++++ |.|..|+|||+++++..+.|++.
T Consensus 563 ~MiscGADksimFr~~qk~~---~g~~--f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKAS---SGRL--FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred EEEeccCchhhheehhcccc---Ccee--ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 79999999988643222100 0001 1111 1111157899999999999998 79999999999999999999874
Q ss_pred -CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCc
Q 004683 625 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 703 (737)
Q Consensus 625 -~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 703 (737)
+|.+....+...|.|-||++.+.|.++.++|..+|+++....+| +.. ++.+.|.+ |.+.|++.+.||.
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH--------sE~--VTG~kF~n-DCkHlISvsgDgC 706 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH--------SEA--VTGVKFLN-DCKHLISVSGDGC 706 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc--------chh--eeeeeecc-cchhheeecCCce
Confidence 35688889999999999999999999999999999999988743 333 45999999 8999999999999
Q ss_pred EEEEecCC
Q 004683 704 VHVIEPLE 711 (737)
Q Consensus 704 V~iWd~~~ 711 (737)
|.||.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999864
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=220.04 Aligned_cols=237 Identities=15% Similarity=0.180 Sum_probs=195.8
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc
Q 004683 452 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 452 h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~ 524 (737)
-.+.+..++|+ .+.+++++ ||++++||+.. ..++..++.|...|.++.|++.. .++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 56789999999 66677666 99999999643 46788899999999999999877 88888999999999999999
Q ss_pred EEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE-EEE
Q 004683 525 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI 602 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~~ 602 (737)
.+.++.+|...|...+|+| ..+.++++|.|+++++||++.. .+.+. ++ .|. ..|.++.|+.-...+ +++
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----gk~~~-i~-ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----GKFMS-IE-AHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----CceeE-EE-ecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 6789999999999999999873 23333 33 344 689999999876555 454
Q ss_pred -ecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCee-EEEEecccccCCCCccC
Q 004683 603 -HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISL 678 (737)
Q Consensus 603 -~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~~~g~~~~ 678 (737)
.|+.|++||+++. .++.++. +|.-.|..+.|||. ...|++++.|-+++|||...+.. +.+... +
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~--gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~----------H 277 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELN--GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH----------H 277 (311)
T ss_pred CCCceEEEEehhhccccceeec--CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc----------c
Confidence 8999999999875 4566664 47899999999994 56889999999999999986543 333321 2
Q ss_pred ceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 679 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 679 ~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
.-.+..+.|++.++.++|+++.|+.++||++
T Consensus 278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEeccccccccCceeeecccccceeeecc
Confidence 2445699999988999999999999999986
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.9e-26 Score=241.78 Aligned_cols=336 Identities=16% Similarity=0.178 Sum_probs=261.4
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCC-CCeEEEEEecCCCE-EEEEECCCcEEEeeccCC
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDF-LVALTQTATHKLWKWQSN 420 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~-~~V~~v~fspdg~~-L~s~s~dg~i~iWd~~~~ 420 (737)
...+.+|-=..+|.|..+|+|.++++.. ......+. |. +.|+.++|..||+. +++|+..|.+.+||++..
T Consensus 206 T~ieqsPaLDVVaiG~~~G~ViifNlK~---dkil~sFk-----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 206 TAIEQSPALDVVAIGLENGTVIIFNLKF---DKILMSFK-----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred eEeccCCcceEEEEeccCceEEEEEccc---CcEEEEEE-----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 3455888889999999999999999996 34444443 43 89999999999975 555666799999999876
Q ss_pred cc-------ccccc-----------------ceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CC
Q 004683 421 KQ-------SLEEE-----------------NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GG 472 (737)
Q Consensus 421 ~~-------~~g~~-----------------~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg 472 (737)
.. ..|.. ..+....++|...|........+||..+..|++|. |..+.+++ |+
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 55 10110 11222345554455433333445899999999988 77788887 88
Q ss_pred eEEEEECCC-------Cc--------EE---------------------------------------E------------
Q 004683 473 KISIFSLET-------FQ--------TL---------------------------------------A------------ 486 (737)
Q Consensus 473 ~i~vwd~~~-------~~--------~~---------------------------------------~------------ 486 (737)
+.+.+++.. ++ .+ .
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 777665421 00 00 0
Q ss_pred Ee-----cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE---cCCCcceEEEEEeCCCCEEEEEeCCCcE
Q 004683 487 TF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 487 ~~-----~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l---~~~~~~v~~l~~sp~g~~l~s~s~dg~I 557 (737)
.+ +.....+++++.++.| ..+.|+..|.|-+|++++|-....+ ..|.++|+.++...-++.+++++.+|.+
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 00 1122567899999999 9999999999999999999988888 4699999999999999999999999999
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
.+||..... .+.++.-+ ..+..+..+.....++. +.|-.|+++|..+.+.++.+.+ |...|++++||
T Consensus 518 kfw~f~~k~-----l~~~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS 585 (910)
T KOG1539|consen 518 KFWDFKKKV-----LKKSLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFS 585 (910)
T ss_pred EEEecCCcc-----eeeeeccC-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeC
Confidence 999999843 33333344 46888888888877777 5888999999999999999976 79999999999
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC-CcEEEEecC
Q 004683 637 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPL 710 (737)
Q Consensus 637 p~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~V~iWd~~ 710 (737)
|||+||++++.|++|++||+.++.++..+.. + ..++++.|+| +|++|||...| ..|++|-=.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d--~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------D--SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEec---------C--CcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 9999999999999999999999999888753 2 2355899999 89999999988 689999644
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9e-27 Score=234.91 Aligned_cols=279 Identities=20% Similarity=0.274 Sum_probs=226.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
.+.|.+++|||..++=++....-.+.+|+..+ ....+++. .....|+++.|. |++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~---------------------~~~~k~~s--rFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT---------------------RSVRKTFS--RFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecch---------------------hhhhhhHH--hhccceeEEEeecCCeE
Confidence 57899999999766433333344666666442 22222111 367889999998 778
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
+++|. .|.|+++|..+...++.+.+|..+|..+.|+|++ .+++|+.|+.+++||+.+......+.+|+..|.|.+|+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 88887 7999999988777888999999999999999988 88999999999999999988766899999999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEe
Q 004683 543 LS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~ 621 (737)
|. +.++++||.||.|++||++... ..+.++..+ .+|.++.+-|.|..++++....|++||+.+|......
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC----ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 95 4589999999999999999832 223324333 6899999999999999988899999999866554443
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
.. .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+... ++ +.+++.+| |+..++.|..|
T Consensus 234 ~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGmsn 300 (487)
T KOG0310|consen 234 MF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMSN 300 (487)
T ss_pred hh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEeccc
Confidence 33 27899999999999999999999999999999999999888642 22 55999999 78999999999
Q ss_pred CcEEEEecCC
Q 004683 702 GRVHVIEPLE 711 (737)
Q Consensus 702 g~V~iWd~~~ 711 (737)
|.+.+=+...
T Consensus 301 Glv~~rr~~~ 310 (487)
T KOG0310|consen 301 GLVSIRRREV 310 (487)
T ss_pred ceeeeehhhc
Confidence 9888875443
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=219.07 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=205.7
Q ss_pred ccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCC
Q 004683 447 DIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 447 ~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~ 522 (737)
+....|.++|++++.++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.++- .|++|+.||.|.+|+...
T Consensus 37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 333479999999999999999999 9999999999999999999999999999999876 899999999999999999
Q ss_pred CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE
Q 004683 523 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 602 (737)
Q Consensus 523 ~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 602 (737)
..++.++++|.+.|+.++.+|.|++.++.+.|+.+++||+-.++......+. ...+.+.|+|.|.+++++
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----------CcceeeEEcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999886543322222 234569999999999998
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceee
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
....|-+|.+.+......+.. ...+.++.|- ++..|++|++|+.|.+||..+..+...+..| ...|..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--------~~RVK~ 254 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--------ENRVKD 254 (362)
T ss_pred eccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--------hhheee
Confidence 888999999988777666543 3446666663 6778999999999999999998888888765 334553
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+..--+| ++.+|+|+|.||.|+|||+...
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 3333456 7889999999999999999865
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=253.23 Aligned_cols=241 Identities=14% Similarity=0.188 Sum_probs=200.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC--------------------------------C-------------
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F------------- 482 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~--------------------------------~------------- 482 (737)
.|.+.|+++.|| |+|||+|+ ||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999 99999999 99999998754 0
Q ss_pred ---------------cEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeC-CCC
Q 004683 483 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 546 (737)
Q Consensus 483 ---------------~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp-~g~ 546 (737)
++++.+.||.+.|..+.|+.+++|++++.|.+|++|++....|++.|. |...|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 122345789999999999999999999999999999999999999998 999999999999 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCC
Q 004683 547 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 625 (737)
Q Consensus 547 ~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~ 625 (737)
++++|+-||.||||++...+... ...-+ .-|++++|.|+|++.++| .+|.+++|+....+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~------W~Dl~----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVD------WNDLR----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEe------ehhhh----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999999999999998733222 22223 589999999999999985 99999999998777665543322
Q ss_pred C------CCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 626 M------DLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 626 h------~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
| ...|+++.|.|. ..-|++.+.|..|+|+|..+..++..+.+.. +..- -+...|++ ||++|+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-------n~~S-Q~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-------NTSS-QISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------cCCc-ceeeeEcc-CCCEEEEe
Confidence 2 337999999974 3468888899999999999989888887542 2111 23688999 89999999
Q ss_pred ECCCcEEEEecCC
Q 004683 699 LTNGRVHVIEPLE 711 (737)
Q Consensus 699 s~Dg~V~iWd~~~ 711 (737)
++|..|+||+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
No 74
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.2e-26 Score=246.18 Aligned_cols=259 Identities=15% Similarity=0.149 Sum_probs=201.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeee-ccCCCCCCCeEEEEEe---
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~-~~~~~h~~~V~~v~~s--- 462 (737)
|-..|.....++|+..+++++.+..+..|+...+.. .++..+.|..... ....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 445677788888988889999999999998653211 2333344432210 0112799999999998
Q ss_pred CCEEEEEe-CCeEEEEECCCC-------cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 463 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
+++|++|+ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|++|++||+++++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 67899999 999999999765 3567788999999999999986 8999999999999999999999999999
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E----ecCcE
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 607 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~----~dg~I 607 (737)
...|.+++|+|+|..+++++.|+.|++||++++.. +..+ .+|.. ..+..+.|.+++..+++ + .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl-~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSV-EAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEE-ecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999999999999998543 3322 23431 33457889998877776 3 36899
Q ss_pred EEEeCCCCc-eeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEE
Q 004683 608 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 608 ~iwd~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~ 665 (737)
++||+++.. ++..... .+...+....|++++++|++|+ .||.|++||+.+++.....
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 999998754 3333322 2345566678999999999887 5999999999999876654
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-27 Score=216.58 Aligned_cols=261 Identities=15% Similarity=0.200 Sum_probs=209.1
Q ss_pred cCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEee
Q 004683 359 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 437 (737)
Q Consensus 359 ~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~ 437 (737)
..|++.|-++.....-..+..+. -.+.+..|+||+. ...+++++.||++++||.....
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---------------- 94 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---------------- 94 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------
Confidence 35778888886432234445442 4789999999985 4578899999999999954211
Q ss_pred cCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEEC
Q 004683 438 PSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFD 511 (737)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~ 511 (737)
..+.... .|...|.++.|+ +..+++++ |++|++|+...++.++++.+|...|....|+|.. .++++|.
T Consensus 95 ----~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 95 ----KPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred ----cchhHHH--hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 1121111 699999999999 66788888 9999999999999999999999999999999987 9999999
Q ss_pred CCeEEEEecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEE
Q 004683 512 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 512 dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
|+++++||++....-..+..|...|.|+.|+. +.+.+++|+.|+.|+.||++.-+ .++..+ .+|. ..|..+
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL-~gh~---~AVRkv 240 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFEL-NGHG---LAVRKV 240 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceee-cCCc---eEEEEE
Confidence 99999999986444444888999999999987 66789999999999999999732 344433 6676 799999
Q ss_pred EEecCCCEE-EE-EecCcEEEEeCCCCc-eeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEc
Q 004683 591 QFHPDQIHL-LS-IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 591 ~~sp~g~~l-~~-~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~ 656 (737)
.|||...-+ ++ +.|-+++|||...+. .+.++. .|...+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 999987554 44 589999999997544 344442 4788999999997 7889999999999999984
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-26 Score=212.50 Aligned_cols=269 Identities=15% Similarity=0.161 Sum_probs=213.6
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+..+|.+|.+++.|.+..+|-..+ +...-. +.| |++.|||+..+.+.+++++|+.|.++++||+.++ +
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~n----GerlGt-y~G--HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-----k 85 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLN----GERLGT-YDG--HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-----K 85 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecC----Cceeee-ecC--CCceEEEEEecCCcceeeeccccceeEEEEcCCC-----c
Confidence 778999999999999999998764 333322 666 9999999999999999999999999999887743 3
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeC------CeEEEEECC-------CCcEEEEecCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFANP 491 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sd------g~i~vwd~~-------~~~~~~~~~~~ 491 (737)
..+.+ ....+|..+.|+ |++++.+.| +.|.++|+. ..++...+..+
T Consensus 86 ~la~~-------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 86 QLATW-------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred EEEEe-------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 23222 266789999999 666666653 479999987 34567888888
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE-EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 569 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~ 569 (737)
...++.+-|.|-+ .|++|..||.|..||+++|.. +..-+.|...|+.+.++||..+++++|.|.+-++||.++-+.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-- 224 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-- 224 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee--
Confidence 8999999999999 999999999999999999854 555677999999999999999999999999999999998433
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-CcEEEEeCCCC------------ceeEEecCCCCCCCeEEEE
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTL------------NHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d-g~I~iwd~~~~------------~~~~~~~~~~h~~~v~~~~ 634 (737)
+.+.... .+|++.+++|....++.+ .+ ..|.--+.+.| +.+..+++ |-++|++++
T Consensus 225 ---~Kty~te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HFGPINsvA 294 (327)
T KOG0643|consen 225 ---LKTYTTE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HFGPINSVA 294 (327)
T ss_pred ---EEEeeec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cccCcceeE
Confidence 3322222 689999999988777763 21 22332223333 33444544 799999999
Q ss_pred EccCCCEEEEEecCCeEEEEEcCC
Q 004683 635 YSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 635 ~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
|+|+|+..++|++||.|++.....
T Consensus 295 fhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ECCCCcccccCCCCceEEEEEecc
Confidence 999999999999999999986654
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-26 Score=240.33 Aligned_cols=273 Identities=18% Similarity=0.205 Sum_probs=226.0
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
-.+|+ ....+|+|. ...|.+|+... +....+ ... +.+.|+++.|+++|.+|++|..+|+|.|||......
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s----~~v~~l-~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~- 251 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASS----GSVTEL-CSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK- 251 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCC----CceEEe-Eec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-
Confidence 34477 344555554 46799999885 443332 221 478999999999999999999999999999764322
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEE-ecCCCCCeEEEEEc
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILL 501 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s 501 (737)
+..+. .+|...|.+++|.+..+.+|+ ++.|..+|+...+.... +.+|...|..+.|+
T Consensus 252 --------------------~~~~~-~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 252 --------------------TRTLR-GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred --------------------ccccc-CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 11111 138999999999988899999 99999999988765554 78999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEe--CCCcEEEEeCCCCceeeceeeeecc
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s--~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
+|+ ++|+|+.|+.+.|||.....+...+..|...|.+++|+| ....||+|+ .|+.|++||..++ ..++.+.
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vd 385 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVD 385 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccc
Confidence 999 999999999999999988888899999999999999999 566788865 5999999999985 4455455
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEE--E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
.+ ..|.++.|++..+.|++ | .++.|.||+..+.+.+..+.+ |...|..+++||||..+++|+.|.++++|
T Consensus 386 tg-----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 386 TG-----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG--HTSRVLYLALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred cC-----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--CcceeEEEEECCCCCEEEEecccCcEEec
Confidence 55 78999999999988887 4 678999999999998888876 78899999999999999999999999999
Q ss_pred EcCCC
Q 004683 655 DTSTL 659 (737)
Q Consensus 655 d~~~~ 659 (737)
++-..
T Consensus 459 ~~f~~ 463 (484)
T KOG0305|consen 459 NLFDE 463 (484)
T ss_pred cccCC
Confidence 98875
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.5e-27 Score=233.72 Aligned_cols=278 Identities=15% Similarity=0.121 Sum_probs=224.4
Q ss_pred CccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 341 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 341 ~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
....+.|.++...+++|+.|..|++|++...+ ..... +|.| ..++|+.+.|.++++++++++.|+.+++|++...
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~-tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELIS-TLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhh-hhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 34445688998999999999999999998632 11222 3655 6789999999999999999999999999987642
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE-EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEE
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATY 497 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~-l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 497 (737)
..+.++. +|.+.|+++.|. +.. +++|+ |.+|+.||+..+.+.+++-.. ..+..
T Consensus 252 ---------------------r~~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnD 307 (459)
T KOG0288|consen 252 ---------------------RLRHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCND 307 (459)
T ss_pred ---------------------hhhhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccc
Confidence 2233333 799999999999 554 89999 999999999998888776432 23444
Q ss_pred EEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 498 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
|..+ . .+++|-.|+.|++||.++..+......+. .|+++..+++|..+.+++.|.++.+.|+++.+......-..+
T Consensus 308 I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred eEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 4444 5 78999999999999999999998888654 899999999999999999999999999998543222111112
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
..+ ...+.++|||++.|+++ |.||.|+||++.++++...+........|++++|+|.|..+++++.++.+.+|.
T Consensus 385 k~a-----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 385 KCA-----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccc-----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 233 35889999999999999 599999999999999988887654344799999999999999999999999993
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=246.98 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=230.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeee-ccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~-~~~~~h~~~V~~v~~s--~ 463 (737)
|...+.+..|. +.++++++.|++|++|+... +..+.. +. ||.+.|.++++. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~---------------------~~~i~~~l~--GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN---------------------GYLILTRLV--GHFGGVWGLAFPSGG 261 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc---------------------ceEEEeecc--CCCCCceeEEEecCC
Confidence 57788899998 55789999999998887653 333322 22 899999999999 8
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
.++++|+ |.++++||..+|++...+.+|...|.++...+. .+++|+.|.+|++|++.++.++..+.+|..+|+++..+
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 9999999 999999999999999999999999998876433 78889999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-ceeEE
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQ 620 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~-~~~~~ 620 (737)
+.++++|+.|++|++||+.++ +++. ...+|. ..|.++.+.+. ..+++ +.|++|++||+++. +++.+
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 789999999999999999974 5555 344577 89999988876 67776 59999999999999 89988
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
+.+ |..-+.++. ..+++|++++.||+|++||..+++++..+..+ +...+. ++++. ...+++++.
T Consensus 409 l~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~--~l~~~---~~~il~s~~ 472 (537)
T KOG0274|consen 409 LQG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------HVGGVS--ALALG---KEEILCSSD 472 (537)
T ss_pred hcC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccC-------CcccEE--EeecC---cceEEEEec
Confidence 865 566665444 46889999999999999999999999998642 123344 55543 367899999
Q ss_pred CCcEEEEecCCCcee
Q 004683 701 NGRVHVIEPLESEVE 715 (737)
Q Consensus 701 Dg~V~iWd~~~~~~~ 715 (737)
||++++||+.+++..
T Consensus 473 ~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLI 487 (537)
T ss_pred CCeeEEEecccCchh
Confidence 999999999998754
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=232.31 Aligned_cols=304 Identities=18% Similarity=0.174 Sum_probs=224.6
Q ss_pred cceeeccCCCCCcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCC-ceeeeecCCCCCCCCeEEEEEec
Q 004683 320 RPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSH 398 (737)
Q Consensus 320 ~~l~~~~gh~~~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~-~~~~~~l~~~~h~~~V~~v~fsp 398 (737)
+.--.+.+|..+++++- +-|.|-.+++||.|.+|+.||+.+....- .++++ .|. ....|.+++||+
T Consensus 158 shEi~l~hgtk~Vsal~----------~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~--E~h~i~sl~ys~ 224 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALA----------VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPC--ETHQINSLQYSV 224 (641)
T ss_pred cceEeccCCceEEEEee----------ecCCCceeeeccccceEEEEecccccccchhhhcc-Ccc--cccccceeeecC
Confidence 33334456666666544 55789999999999999999998653222 23333 444 466899999999
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCe-eee-eccCCCCCCCeEEEEEe---CCEEEEEe-CC
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMT-NDIAADPKDSISCFALR---GSHLFSAS-GG 472 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~-~~~-~~~~~~h~~~V~~v~~s---~~~l~s~s-dg 472 (737)
.|..|++.+....++|+|-..... ..+ ..|. .+. .....||...++|.+|+ .+.+++++ ||
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~------~e~-------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEI------VEF-------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred CCCeEEEEecCcceeEEccCCcee------eee-------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 999999999999999999664322 111 0110 110 01112899999999999 56788888 99
Q ss_pred eEEEEECCCCcE-EEEec-----CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE---EEEEcCCCc--ceEEEE
Q 004683 473 KISIFSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQN--RITCLA 540 (737)
Q Consensus 473 ~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~---~~~l~~~~~--~v~~l~ 540 (737)
++++||+.+.+. .+.+. +..-.+++++|++|| .||+|+.||.|.+|+..+... ...-..|.. .|+|++
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence 999999987543 33332 233467999999999 999999999999999754322 223345766 899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-------ecCcEEEEeCC
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAP 613 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-------~dg~I~iwd~~ 613 (737)
|+++|++|++-+.|+++++||++.. .+++.....-.+. .+-+.++|||+.+.|++| ..|.+.+||..
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~----kkpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQF----KKPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred eccccchhhhccCCCceeeeecccc----ccchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 9999999999999999999999973 2344322111111 567789999999999984 23679999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+...+..+.. ....|..+.|+|.-+.|++|+.||.++||--.
T Consensus 446 t~d~v~ki~i--~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 446 TLDTVYKIDI--STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ceeeEEEecC--CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 9988888755 37889999999999999999999999997544
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.1e-25 Score=199.63 Aligned_cols=302 Identities=14% Similarity=0.140 Sum_probs=221.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc-ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
+..|.+++|.|.|...+.||...+++|-.......+ .++......+. +.. ....+|.+.|.|.+|+ |.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~--------v~~-kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS--------VLC-KRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe--------EEe-eeccccCccEEEEEecCccC
Confidence 778999999999999999999999998754421110 11111111111 111 1112699999999999 99
Q ss_pred EEEEEe-CCeEEEEECCCCcE-----EEEecCCCCCeEEEEEcCC----C-eEEEEE-CCCeEEEEecCCCcEEEEEcCC
Q 004683 465 HLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~~----~-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
++++|+ |.+|++...+...+ -..+.-|.+.|..++|-.+ + .+++++ .|..|++-|..+|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999 89999876643222 2356678999999999543 2 555544 5778888899999999999999
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEe
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 611 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd 611 (737)
++.|.++ ++-+|-++++|+.|.+|++||++-..++.. +..-..+..-....|.+++..|.|+.|+++ .|.+..+||
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~--l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT--LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee--ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 9999886 444688999999999999999997433221 111111111112689999999999999997 889999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
++.++.++.+.+ |...|.++.|||...|+++++.|..|++-|+... +...++.. +...|.+ .++.+.|+|+
T Consensus 260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~--vv~ehkd---k~i~~rwh~~- 330 (350)
T KOG0641|consen 260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIM--VVAEHKD---KAIQCRWHPQ- 330 (350)
T ss_pred eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceE--EEEeccC---ceEEEEecCc-
Confidence 999999999965 7999999999999999999999999999998742 22222211 0011222 2457999995
Q ss_pred CCEEEEEECCCcEEEEecC
Q 004683 692 PNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~ 710 (737)
.--+++.+.|.++.+|-+.
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 5668888899999999763
No 82
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=241.65 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=207.5
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccC------CCCceee--eecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeec
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKW 417 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~------~~~~~~~--~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~ 417 (737)
.++|+..+++++.+.....|+..++. ..+.... ..+.| |.+.|.+++|+| ++.+|++|+.|++|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G--H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG--QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC--CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 56676777777777776777654310 0111100 11444 999999999999 8899999999999999998
Q ss_pred cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCC
Q 004683 418 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP 493 (737)
Q Consensus 418 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~ 493 (737)
..... . ......+..+. +|...|.+++|+ +++|++++ |++|++||+.+++.+..+.+|..
T Consensus 106 ~~~~~-----~---------~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 106 PEEGL-----T---------QNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred CCCcc-----c---------cccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 74321 0 00011111122 799999999999 36899999 99999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcc-eEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCce
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWKK 567 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~-v~~l~~sp~g~~l~s~s----~dg~I~lwdl~~~~~ 567 (737)
.|.+++|+|+| .|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||++...
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~- 248 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA- 248 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-
Confidence 99999999999 9999999999999999999999999888765 45678999888877654 47899999998632
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
.++........ ..+....|+++++.+++ + .|+.|++||+.+++++..... .+..++.+++|.|.-..=+.
T Consensus 249 ---~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~dv~- 320 (493)
T PTZ00421 249 ---SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSLDTR- 320 (493)
T ss_pred ---CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEeccccccccc-
Confidence 22221111222 45667789999998887 4 599999999999988766543 24567888999885322111
Q ss_pred ecCCeEEEEEcCCC
Q 004683 646 CKSGHVKVFDTSTL 659 (737)
Q Consensus 646 s~dg~I~vwd~~~~ 659 (737)
.--..++|.+...
T Consensus 321 -~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 321 -KCEIARFYALTYH 333 (493)
T ss_pred -ceeeeEEEEecCC
Confidence 1223466666543
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=230.04 Aligned_cols=281 Identities=12% Similarity=0.132 Sum_probs=219.8
Q ss_pred cCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
|.| |.++|.|++=+|.. ..+++|+.||.|+|||+....+ ...+ ..|.+.|..++
T Consensus 62 L~g--HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---------------------~~~f--~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 62 LDG--HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---------------------IRTF--KAHEGLVRGIC 116 (433)
T ss_pred ccc--cccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------hhee--ecccCceeeEE
Confidence 555 99999999999987 6799999999999999875332 1111 16999999999
Q ss_pred Ee-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 461 LR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 461 ~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
+. +..+.+|.|.+|+.|.++. ...+++.+. ..+..+.-+..+ .+++|+. .|.|||.+-..++..+.-....|.+
T Consensus 117 v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 117 VTQTSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred ecccceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeE
Confidence 99 5555555599999999874 566666543 345566655556 7888875 5999999888899888877788999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-
Q 004683 539 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL- 615 (737)
Q Consensus 539 l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~- 615 (737)
+.|+|.. ..|++++.|++|.+||++++.+.....+. ..-+.++|+|.+-.+++ ..|..++.||++..
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhc
Confidence 9999965 45777779999999999996544332222 34668999997655555 48999999999874
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 695 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 695 (737)
.++..+.+ |.+.|.++.|||.|+-+++||.|.+|+||.+..+.....+.. ..--.++||.|+. |.+++
T Consensus 263 ~p~~v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------kRMq~V~~Vk~S~-Dskyi 330 (433)
T KOG0268|consen 263 RPLNVHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------KRMQHVFCVKYSM-DSKYI 330 (433)
T ss_pred ccchhhcc--cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------hhhheeeEEEEec-cccEE
Confidence 45566654 789999999999999999999999999999998876555432 1122366999999 89999
Q ss_pred EEEECCCcEEEEecCCCc
Q 004683 696 ALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 696 as~s~Dg~V~iWd~~~~~ 713 (737)
++||+|+.|++|.....+
T Consensus 331 ~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EecCCCcceeeeecchhh
Confidence 999999999999987655
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.1e-25 Score=199.28 Aligned_cols=291 Identities=13% Similarity=0.107 Sum_probs=225.8
Q ss_pred eeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccC----------CCCceeeeecCCCCCCCCeEEEEEecCCCEEE
Q 004683 335 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN----------EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 404 (737)
Q Consensus 335 l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~----------~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~ 404 (737)
.+++....+.+.|.|.|...|.|+...+.+|....... .+....-..-. | |.+.|.|.+|||+|..++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k-h-hkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK-H-HKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc-c-cCccEEEEEecCccCeEE
Confidence 34556666777899999999999999999887543211 01111111112 2 899999999999999999
Q ss_pred EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCeEEE
Q 004683 405 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISI 476 (737)
Q Consensus 405 s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~i~v 476 (737)
+||.|.+|++--+....+ + .+|.-+... -|.+.|..++|- +..|++++ |..|++
T Consensus 106 tgsndk~ik~l~fn~dt~--------------~-~~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTC--------------N-ATGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred ecCCCceEEEEecccccc--------------c-ccCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999999999976654332 0 111111111 489999999997 66888887 678888
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-------CCcceEEEEEeCCCCEE
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVL 548 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-------~~~~v~~l~~sp~g~~l 548 (737)
-|..+|+..+.+.+|.+.|.++ ++=+| ++++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|+++
T Consensus 168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 8999999999999999998765 34467 999999999999999999888887743 23678999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC----ceeEEecC
Q 004683 549 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHTSQLVP 623 (737)
Q Consensus 549 ~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~----~~~~~~~~ 623 (737)
++|-.|.+..+||++.+ +.++. ...|. ..|.++.|+|...++++ +.|..|++-|++.. -++...
T Consensus 247 ~sg~~dssc~lydirg~-----r~iq~-f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv-- 315 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGG-----RMIQR-FHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV-- 315 (350)
T ss_pred eeccCCCceEEEEeeCC-----ceeee-eCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE--
Confidence 99999999999999984 55553 34455 78999999999999998 59999999998631 122222
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 624 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
..|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 3478888999999998888999999999999764
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=218.75 Aligned_cols=291 Identities=11% Similarity=0.161 Sum_probs=227.0
Q ss_pred CCCCccccccCCCCCEEEEEecCCeEEEeecCcc-------------CCCCceeeeecCCCCCCCCeEEEEEecCCCEEE
Q 004683 338 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-------------NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 404 (737)
Q Consensus 338 ~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~-------------~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~ 404 (737)
.....++..|+|||..+|+|+.|..|+|.|++.. ...+....-+|-. |.++|+++.|+|....|+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--H~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--HVDEVNDLDFHPRETILI 188 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--ccCcccceeecchhheEE
Confidence 3344556679999999999999999999998721 0111122223444 999999999999999999
Q ss_pred EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC
Q 004683 405 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 481 (737)
Q Consensus 405 s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~ 481 (737)
+|+.|++|+++|+..... . +..+.+ ....+|.++.|+ |.+++.|. ..++++||+++
T Consensus 189 S~srD~tvKlFDfsK~sa-----K-------------rA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSA-----K-------------RAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred eccCCCeEEEEecccHHH-----H-------------HHHHHh---hccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 999999999999763211 0 000101 256789999999 99999999 58999999999
Q ss_pred CcEEEEe---cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-C-CcceEEEEEeCCCCEEEEEeCCC
Q 004683 482 FQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-H-QNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 482 ~~~~~~~---~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-~-~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
.++...- .+|.+.|+++.+++.+ +.++|+.||.|++||--+++|+.++.. | ...|.+..|..+|+++++.+.|.
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 8876654 3788999999999999 999999999999999888999988854 4 45789999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeecccC-CCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEE
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 632 (737)
.+++|.+.++.. +...... -+....--+...|+....+++.- ..+.+.-||.+++..+..+.. +|.+.+..
T Consensus 328 ~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~ 401 (430)
T KOG0640|consen 328 TVKLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRW 401 (430)
T ss_pred eeeeeeecCCce-----EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceE
Confidence 999999999644 3322211 11000223356677777888773 568899999999877665544 58999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcC
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+.-||.+.-+++++.|-.+++|-.+
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999754
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=216.23 Aligned_cols=289 Identities=14% Similarity=0.139 Sum_probs=234.9
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |.++||.++.....+.+.++|.|.+.+||.+++ |.|+..+. ||.+.|+++.|
T Consensus 144 ~~G--HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es---------------------g~CL~~Y~--GH~GSVNsikf 198 (481)
T KOG0300|consen 144 LEG--HKDGIWHVAADSTQPICGTASADHTARIWSLES---------------------GACLATYT--GHTGSVNSIKF 198 (481)
T ss_pred hcc--cccceeeehhhcCCcceeecccccceeEEeecc---------------------ccceeeec--ccccceeeEEe
Confidence 555 999999999998888999999999999887764 34444333 89999999999
Q ss_pred e--CCEEEEEe-CCeEEEEEC------CC------------------------------C----cEEEEecCCCCCeEEE
Q 004683 462 R--GSHLFSAS-GGKISIFSL------ET------------------------------F----QTLATFANPPPIATYF 498 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~------~~------------------------------~----~~~~~~~~~~~~v~~~ 498 (737)
+ +.++++++ |++..||.. .. + .++..+.+|.+.|.+.
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9 88889998 999999962 11 0 1334567899999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
.|-..| .+++++.|.+..+||+++|..+..+.||....+.++-+|..+++++++.|.+.++||.+.. ...+. ++
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VF 353 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VF 353 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-ee
Confidence 999999 9999999999999999999999999999999999999999999999999999999999851 12233 67
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
.||. ..|+++.|..+.+.+..+.|.+|++||+++. .++.++.. ..+++.++.+..+..++.-.++..|++||+
T Consensus 354 QGHt---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 354 QGHT---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cccc---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEec
Confidence 7888 8999999998876555578899999999875 46777754 788999999999999999999999999999
Q ss_pred CCCeeEEEEecccccCCCCccCceeeEEEEEccCCC--CEEEEEECCCcEEEEecCCCc
Q 004683 657 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~--~~las~s~Dg~V~iWd~~~~~ 713 (737)
+..+ +.+++.. .-.|| .-.++|++|.. +. .-|.+|+.|..+.-|++..+.
T Consensus 428 nG~R-laRlPrt--sRqgH---rRMV~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 428 NGNR-LARLPRT--SRQGH---RRMVTCCAWLE-EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCCc-cccCCcc--ccccc---ceeeeeeeccc-cCcccccccccccceeeeeEecccC
Confidence 8655 4444321 11233 23356999975 32 247889999999999987653
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.8e-26 Score=211.60 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=210.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEe--cCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~ 523 (737)
+|...|.+++|+ |..+++|+ |+++.+|++...+..... .+|.+.|-.++|+|.. .+++++.|.+|++||++++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 689999999999 99999999 999999999887655544 4888899999999987 9999999999999999999
Q ss_pred cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E
Q 004683 524 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 602 (737)
Q Consensus 524 ~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~ 602 (737)
++........+ -.-+.|+|+|.+++.++.|..|.+.|.++.......... ..+..++|+.++.+++. .
T Consensus 98 k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 98 KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence 99988874433 445789999999999999999999999984332222211 56888999987777766 5
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceee
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
..|.|.|......+++.+++. |.....++.|+|+|+++|+|+.|..+.+||+...-+...+..+ +-+|.
T Consensus 167 GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR- 235 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR- 235 (313)
T ss_pred CCceEEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence 779999999999999999976 6888999999999999999999999999999987777777543 44455
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
.++|+. ||++||+||+|..|-|=++++|+..|.++-
T Consensus 236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred -EEEecc-CcceeeccCccceEEeEecccCCeEEEeec
Confidence 899999 899999999999999999999999998743
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-24 Score=208.47 Aligned_cols=245 Identities=16% Similarity=0.185 Sum_probs=204.0
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC--CCeEEEEecCCCcE
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 525 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~--dg~I~vwd~~~~~~ 525 (737)
..+.|.++.|+ |.++++++ |.++++||..+|+.++++..+.-.+..+.|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 56789999999 89999988 8899999999999999999888888888887777 6666665 88999999999999
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 604 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d 604 (737)
++.|.||...|++++.+|-+..+++++.|++|++||++..++... +.. ..-..++|.|+|-++|++ ..
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~------~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNL------SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----Eec------CCCcceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999997332211 111 223368999999999986 44
Q ss_pred CcEEEEeCCCC--ceeEEecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCcee
Q 004683 605 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 681 (737)
Q Consensus 605 g~I~iwd~~~~--~~~~~~~~~-~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 681 (737)
+.|++||++.. .+..++... ......+.+.|||||++++.+...+.+++.|.-+|.....+..+. ...-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCc
Confidence 49999999863 455555432 236778999999999999999999999999999999888887542 22222
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 682 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
....+|.| |++++.+|+.||+|.+|+++++...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence 35889999 8999999999999999999998754
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-26 Score=237.69 Aligned_cols=325 Identities=17% Similarity=0.196 Sum_probs=243.8
Q ss_pred CCCCCEEEEEecCCeEEEeecCccCC-CCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 348 LPDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 348 spdg~~la~~s~dg~v~iW~~~~~~~-~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
.|.++++.+||.||.|++|+...... +...-...++. |.+.|..++...+|+.|+++|.|.+|++|+.....
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~----- 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN----- 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----
Confidence 37788999999999999999875421 11211223555 99999999999999999999999999999876421
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCc--EEE--------Eec-CC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLA--------TFA-NP 491 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~--~~~--------~~~-~~ 491 (737)
..++..+. .|.+.|.|+++- ...+|+|+ |+.|.+||+.++. .+. .+. ++
T Consensus 107 --------------~~c~stir--~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 107 --------------TFCMSTIR--THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred --------------chhHhhhh--cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 01222222 699999999994 67888999 9999999999872 222 223 77
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
...|.+++.++.| .|++|+..+.+++||.++++.+..++||+..|.++..++||+.++++|.||+|++||+.. .
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-----Q 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-----Q 245 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----c
Confidence 7889999999999 999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
+++.++ ..|. ..|+++..+|+-..+++| .||.|..=|+++. ++...++. ..+|..+..+.+.+-+-+++.|
T Consensus 246 rCl~T~-~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLATY-IVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeeeE-Eecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeecc
Confidence 555543 3344 569999999999999985 9999999999884 33333332 5667777777544445677788
Q ss_pred CeEEEEEcCCCeeEEE---------------Ee---cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 649 GHVKVFDTSTLELRCQ---------------IN---LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 649 g~I~vwd~~~~~~~~~---------------~~---~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+.|+-|...-...... .. .+.++..| +..+ ...+.-. |.+.+.|=...|.+.+||+.
T Consensus 319 s~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai--~k~~mL~-dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 319 SSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAI--KKHAMLN-DKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhh--hhhhhhc-CcceEeeecCCCCEEEEEee
Confidence 9999997652211100 00 01111112 1111 1222333 67889999999999999997
Q ss_pred CC
Q 004683 711 ES 712 (737)
Q Consensus 711 ~~ 712 (737)
..
T Consensus 394 ~~ 395 (735)
T KOG0308|consen 394 AC 395 (735)
T ss_pred ee
Confidence 64
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-25 Score=234.59 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=221.8
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEE
Q 004683 391 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 468 (737)
Q Consensus 391 V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s 468 (737)
..-+.||..+ .|+.|. ...|.+|+-. ++.+..... -+...|+++.|+ |++|++
T Consensus 180 ~nlldWss~n-~laVal-g~~vylW~~~---------------------s~~v~~l~~--~~~~~vtSv~ws~~G~~Lav 234 (484)
T KOG0305|consen 180 LNLLDWSSAN-VLAVAL-GQSVYLWSAS---------------------SGSVTELCS--FGEELVTSVKWSPDGSHLAV 234 (484)
T ss_pred hhHhhcccCC-eEEEEe-cceEEEEecC---------------------CCceEEeEe--cCCCceEEEEECCCCCEEEE
Confidence 3457888444 344443 4567777654 333222221 237899999999 999999
Q ss_pred Ee-CCeEEEEECCCCcEEEEecC-CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE-EcCCCcceEEEEEeCC
Q 004683 469 AS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLS 544 (737)
Q Consensus 469 ~s-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~ 544 (737)
|. +|.|.|||..+.+.++.+.+ |...|.+++|. + .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 99 99999999999999999998 99999999998 5 899999999999999998776554 8889999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-CEEEEE---ecCcEEEEeCCCCceeEE
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI---HEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~---~dg~I~iwd~~~~~~~~~ 620 (737)
++++|+|+.|+.+.|||... ..+.. ....|. ..|..++|+|-. ..||+| .|+.|++||..++..+..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~-----~~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLS-----PEPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CCeeccCCCccceEeccCCC-----ccccE-EEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 99999999999999999965 23334 244566 799999999976 556653 789999999999999888
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~s--gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
+.. ...|+++.|++..+-+++ |..++.|.||+..+.+.+..+.+| . ..++.++++| |+..+++|
T Consensus 384 vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--------~--~RVl~la~SP-dg~~i~t~ 449 (484)
T KOG0305|consen 384 VDT---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--------T--SRVLYLALSP-DGETIVTG 449 (484)
T ss_pred ccc---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--------c--ceeEEEEECC-CCCEEEEe
Confidence 754 788999999998876665 455789999999998888888744 2 2356999999 89999999
Q ss_pred ECCCcEEEEecCCC
Q 004683 699 LTNGRVHVIEPLES 712 (737)
Q Consensus 699 s~Dg~V~iWd~~~~ 712 (737)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999999664
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=222.79 Aligned_cols=290 Identities=13% Similarity=0.084 Sum_probs=229.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecC-----CCeeeeeccCCCCCCCeEEEEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~-----~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.-+|.+|+++||+++.++++.|++|.-|++.++.. ... +|... .+...+... .+|...+.+++.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~-----~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKK-----DRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcc-----ccc----ccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 889999999999999999999999999999886543 100 12111 111111111 269999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
+ |+||++|+ |..|.||+..+.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|+++....+.++-+|++.|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9 99999999 9999999999999999999999999999998777 999999999999999999888999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCce
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 617 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~ 617 (737)
++....-++.+-+|+.|+++++|++... .+-+..++. +.+-|++|-.+..++..+.+|.|.+|++.+.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9999888888888889999999999652 122344554 689999998776555557899999999999998
Q ss_pred eEEecCCC----------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe----eEEEEecccccCCCCccCceeeE
Q 004683 618 TSQLVPDK----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE----LRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 618 ~~~~~~~~----------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~----~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
+.+....+ +..+|++++..|...++++|+.+|.|++|.+..+- ++..+.. . -+|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~--GfVN 429 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------V--GFVN 429 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------c--cEEE
Confidence 87765421 12389999999999999999999999999999882 3333321 2 2355
Q ss_pred EEEEccCCCC-EEEEEECCCcEEEEe
Q 004683 684 VIAAHPLEPN-RIALGLTNGRVHVIE 708 (737)
Q Consensus 684 ~v~~sp~d~~-~las~s~Dg~V~iWd 708 (737)
+++|++ +|. ++|..+....+-=|-
T Consensus 430 sl~f~~-sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SLAFSN-SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEcc-CCCEEEEecccccccceee
Confidence 999999 677 455555554444343
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=219.21 Aligned_cols=270 Identities=14% Similarity=0.201 Sum_probs=222.7
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..|....+++|+.|.++.++|... .+...+ ++| |+-.|..+.|+|+...+++++.|..|+||.......
T Consensus 227 ~~~s~~~ilTGG~d~~av~~d~~s----~q~l~~-~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 227 IIPSSSKILTGGEDKTAVLFDKPS----NQILAT-LKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred ecCCCCcceecCCCCceEEEecch----hhhhhh-ccC--cceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 445557789999999999999874 444444 788 999999999999999999999999999998663221
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecC--CCCCeEEEEEc
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILL 501 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s 501 (737)
.... ..|..+|+.+..+ |.||++++ ||+..+.|+.+|..+..... ..-.+++.+|+
T Consensus 296 --------------~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH 356 (506)
T KOG0289|consen 296 --------------PTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH 356 (506)
T ss_pred --------------cccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc
Confidence 0011 1699999999999 99999999 89999999999988877654 33458999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
||| .|.+|..||.|++||+.++..+..|.+|+++|..++|+.+|-++++++.|+.|++||++..+ .++++....
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~ 431 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDE 431 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccc
Confidence 999 99999999999999999999999999999999999999999999999999999999999843 333333322
Q ss_pred CCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCC--CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 581 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
. ..+.++.|.+.|.+|+.+ .+=+|++++-.+ ..++..+ ..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 432 ~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 432 K---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred c---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence 2 569999999999999984 666777777443 3444444 346788999999999999999999999888754
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=224.14 Aligned_cols=269 Identities=15% Similarity=0.168 Sum_probs=215.9
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceee
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
..+++|+.||.|+|||+.. ..|... +.. |.+.|..+++.. ..++++|.|.+|+.|.+...
T Consensus 80 s~~aSGs~DG~VkiWnlsq----R~~~~~-f~A--H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~----------- 139 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQ----RECIRT-FKA--HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP----------- 139 (433)
T ss_pred hhhhccccCceEEEEehhh----hhhhhe-eec--ccCceeeEEecc--cceEEecCCcceeeeeccCC-----------
Confidence 4589999999999999984 455544 666 999999999988 56899999999999987631
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEE
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFA 507 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~ 507 (737)
..... ...+.+..+.-+ ++.++||| ..|.|||.....++..+.-....|.++.|+|.. .|+
T Consensus 140 -----------p~~ti---lg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 140 -----------PLHTI---LGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred -----------cceee---eccccccccccccccccccccC-ceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 11111 134455555555 45555554 578999999999999998777889999999988 888
Q ss_pred EEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe
Q 004683 508 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 587 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v 587 (737)
+|+.|+.|.+||++++.+++.+. .+..-+.++|+|.+-.+++|+.|..++.||++.- ..++. ...+|. +.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----~~p~~-v~~dhv---sAV 275 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----SRPLN-VHKDHV---SAV 275 (433)
T ss_pred eeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhh----cccch-hhcccc---eeE
Confidence 88899999999999999887765 3456788999998888999999999999999973 24455 556776 899
Q ss_pred EEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 588 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 588 ~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
.++.|||.|+.+++ |.|.+|+||..+.+.....+... --..|.++.||.|.+++++||+|+.|++|.....+.+..+
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 99999999999998 69999999999887665544322 2567999999999999999999999999998766655444
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=210.93 Aligned_cols=289 Identities=15% Similarity=0.179 Sum_probs=223.1
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeecc------CCcccccc
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ------SNKQSLEE 426 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~------~~~~~~g~ 426 (737)
.+.+++.|.+.+||.++ .+.|... +.| |.+.|++++|++.|.+++++|.|++..||... ....+.+.
T Consensus 162 i~gtASADhTA~iWs~E----sg~CL~~-Y~G--H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLE----SGACLAT-YTG--HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred ceeecccccceeEEeec----cccceee-ecc--cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 57789999999999999 5888765 677 99999999999999999999999999999832 21111111
Q ss_pred cce---eee---eEEee---cCCCee--eeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCC
Q 004683 427 ENV---NME---SQLYQ---PSSKLV--MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 492 (737)
Q Consensus 427 ~~~---~~~---~~l~~---~~~~~~--~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~ 492 (737)
... ..+ .+--| ...+.. +......+|...|.+..|- |+.+++++ |.+..+||+++|..+..+.||+
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc
Confidence 100 000 00000 001111 1111223799999999998 88999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 493 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
...+.++-+|.. .+++++.|.+.++||++.. ..+..|+||+..|+++.|..+. .+++|+.|.+|++||+++- .
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM----R 389 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM----R 389 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccc----c
Confidence 999999999999 9999999999999999843 4577899999999999999765 6899999999999999973 2
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEec---CCCCCCCeEEEEEccCC--CEEEE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KCIYV 644 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~sp~~--~~l~s 644 (737)
.++.++... .+++.++.+..+..++.- .+..|++||+. |..+..+. ..+|..-|+|++|..+. .-|++
T Consensus 390 splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 390 SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccccccc
Confidence 344444433 689999999988888886 56789999995 44333332 23478889999998432 45788
Q ss_pred EecCCeEEEEEcCCC
Q 004683 645 SCKSGHVKVFDTSTL 659 (737)
Q Consensus 645 gs~dg~I~vwd~~~~ 659 (737)
++.|..+.-|.+.+.
T Consensus 464 cGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 464 CGFDRMVAGWKINTP 478 (481)
T ss_pred ccccceeeeeEeccc
Confidence 999999999998764
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.9e-25 Score=228.64 Aligned_cols=275 Identities=16% Similarity=0.183 Sum_probs=225.5
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEE-EE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~-v~ 460 (737)
+.| |...|..+++.+.. .++++|.||++++|+-..... +......+|.+.|.+ ++
T Consensus 10 l~g--H~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 10 LEG--HKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSIC 65 (745)
T ss_pred ecc--CccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccce
Confidence 555 99999999977655 689999999999998654322 111111246666665 66
Q ss_pred Ee---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 461 LR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 461 ~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
|. +..+++|+ |++|.+|...+..+...+.+|...|.|++...++.+++||.|.++++|-. +++...+.+|+..|
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchhe
Confidence 66 45588888 99999999999999999999999999998877778999999999999975 57778899999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 616 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~ 616 (737)
++++.-|++ .+++||.|.+|++|.-.+ .++ ...+|+ ..|..+++-|++.++-++.||.|++|++ +|.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCc
Confidence 999999988 899999999999997643 344 456788 8999999999988888889999999999 788
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
++.++.+ |...|++++..+++..++++++|++++||+.. ++.+.+... ...+| ++.+-+ +| -++
T Consensus 211 ~l~~~~g--htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-Ng-DIv 274 (745)
T KOG0301|consen 211 VLLEMHG--HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NG-DIV 274 (745)
T ss_pred eeeeeec--cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CC-CEE
Confidence 8888855 79999999988899999999999999999987 556666432 33466 777777 44 477
Q ss_pred EEECCCcEEEEecCC
Q 004683 697 LGLTNGRVHVIEPLE 711 (737)
Q Consensus 697 s~s~Dg~V~iWd~~~ 711 (737)
+|++||.||||....
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 888999999999863
No 96
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.6e-24 Score=231.18 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=175.7
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCCc--------EEEEEcCCCcceEEEE
Q 004683 471 GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLA 540 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~--------~~~~l~~~~~~v~~l~ 540 (737)
++.|++|+..+...+..+.+|.+.|.+++|+|+ + .|++|+.|++|++||+.++. ++..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 689999999888888899999999999999997 5 99999999999999997642 3456788999999999
Q ss_pred EeCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCcee
Q 004683 541 YSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 618 (737)
Q Consensus 541 ~sp~g~~-l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~ 618 (737)
|+|++.. +++++.|++|++||++++.. +..+. +. ..|.+++|+|+|.+|++ +.|+.|+|||+++++.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~-----~~~i~--~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKR-----AFQIN--MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcE-----EEEEe--cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999876 57899999999999998542 22222 22 57999999999999998 57999999999999998
Q ss_pred EEecCCCCCCCeE-----EEEEccCCCEEEEEecCC----eEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEc
Q 004683 619 SQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 619 ~~~~~~~h~~~v~-----~~~~sp~~~~l~sgs~dg----~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
.++.+ |.+.+. ...|++++.++++++.|+ .|+|||+.+ ++++..+... ....++...|.
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld---------~~~~~L~p~~D 271 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID---------NASAPLIPHYD 271 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec---------CCccceEEeee
Confidence 88865 444432 234568999999888764 799999985 5555554321 11222234555
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCc
Q 004683 689 PLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+.++.++++|+.|++|++|++..+.
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCc
Confidence 5468899999999999999997764
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=204.44 Aligned_cols=270 Identities=11% Similarity=0.103 Sum_probs=204.8
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
-.+.|.+++||| ...+++++|.||+||+|+++.... .. ++... .|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----~~------------~ka~~-----~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----LV------------PKAQQ-----SHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc----cc------------chhhh-----ccCCCeEEEEEccCC
Confidence 368999999999 555666888899999999885211 11 11111 599999999999 8
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
..+++|+ |+.+++||+.++ .+..+..|.++|.++.|-+.. .|++||.|.+|+.||.+...++.++. -.+.+.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8888888 999999999998 556778999999999997765 89999999999999999998888887 35566666
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC--c
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--N 616 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~--~ 616 (737)
..- ..+++++..++.|.+|+++.+...... +...-. ..+.+++..++....+. +-+|.+.|..+..+ +
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~----~~SpLk---~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKR----IESPLK---WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhh----hcCccc---ceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 543 357889999999999999874322111 111111 57889999998866666 68999999988776 3
Q ss_pred eeEEecCCCC-------CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 617 HTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 617 ~~~~~~~~~h-------~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
.-.+|+.+.. -..|.+++|+|.-..|++++.||+..+||-.....+.....+ ..++. +.+|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--------~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--------PQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--------CCccc--eeEecC
Confidence 3334443321 235788999999999999999999999998876655554332 44455 999999
Q ss_pred CCCCEEEEEE
Q 004683 690 LEPNRIALGL 699 (737)
Q Consensus 690 ~d~~~las~s 699 (737)
+|.++|-+.
T Consensus 304 -~G~ifaYA~ 312 (347)
T KOG0647|consen 304 -NGSIFAYAL 312 (347)
T ss_pred -CCCEEEEEe
Confidence 788887653
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=229.97 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=224.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 466 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 466 (737)
|+.+-+.++|.|+|.+|++|+.||.|++|+..+... ..+.+. .+...|.+++..+++|
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g~~v~~ia~~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISGELVSSIACYSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccCceeEEEeecccce
Confidence 899999999999999999999999999998654311 011110 2667788888777788
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
++|+ +++|.+|.+.+++.-..+....-++.+++++.+| ++|.||.|-.|++.++.+......+++|..+|.++.|+|+
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred EEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 8888 8999999999887766666666789999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC-CCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEec
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV 622 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~ 622 (737)
+++||+.+.||.|++||+.++..... +..+...... ....+..++|+|+|..+++ +.|+.|.+|+..+......+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~t--l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKT--LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhh--cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 99999999999999999998543221 1111111110 0146778999999665555 899999999999999988888
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 623 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 623 ~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
...+...+..+.|||+|+|||+++.||.|.|||+.+-+. +.+ .-.|++++|.| +.+-+-.-...|
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-------------~~~Vc~~aw~p-~~n~it~~~~~g 292 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-------------KRAVCCEAWKP-NANAITLITALG 292 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-------------cceeEEEecCC-CCCeeEEEeecc
Confidence 766666699999999999999999999999999998322 111 12356999999 676665555555
Q ss_pred cEEEE
Q 004683 703 RVHVI 707 (737)
Q Consensus 703 ~V~iW 707 (737)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 54444
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=212.98 Aligned_cols=278 Identities=12% Similarity=0.088 Sum_probs=227.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
...+.++..+|....+++|+.|.++.++|... +.++..+. ||...|+++.++ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------~q~l~~~~--Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------NQILATLK--GHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecch---------------------hhhhhhcc--CcceEEEEEEeccchhh
Confidence 34678888888878899999999998877553 33333333 899999999999 667
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC--CCcceEEEEE
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 541 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~--~~~~v~~l~~ 541 (737)
+++++ |..|+||.............|..+|+.+..+|.| +|++++.|++..+.|+++|..+..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 88888 9999999998888888888999999999999999 999999999999999999998876653 2345899999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEE
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~ 620 (737)
+|||-.+.+|+.||.|++||+.+.. .+. -+.+|+ ++|..++|+.+|.||++ +.|+.|++||++..+...+
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999842 333 344577 89999999999999999 5888899999999888888
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC--CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
+.... ...+.+++|.+.|.+|+.++.|=+|++++-.+ +..+..+..| .+. .+++.|.. +..+++++
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--------sg~--st~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--------SGL--STGVRFGE-HAQYLAST 494 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--------ccc--cceeeecc-cceEEeec
Confidence 87643 55799999999999999998887777777443 4444444322 222 34888988 77899999
Q ss_pred ECCCcEEEEec
Q 004683 699 LTNGRVHVIEP 709 (737)
Q Consensus 699 s~Dg~V~iWd~ 709 (737)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999888754
No 100
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.7e-23 Score=226.60 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=167.7
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCc--------EEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEE
Q 004683 451 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 516 (737)
Q Consensus 451 ~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~ 516 (737)
+|.+.|.+++|+ +++|++|+ ||+|++||+.++. .+..+.+|...|.+++|+|++ .+++|+.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57999999 9999999997642 344678999999999999998 567999999999
Q ss_pred EEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe-----EEEE
Q 004683 517 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-----NHIQ 591 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v-----~~l~ 591 (737)
+||+++++.+..+. |...|.+++|+|+|.++++++.|+.|++||+++++. +.+ ..+|. +.+ ....
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i~t-l~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----ASS-FHIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----EEE-Eeccc---CCceeEEEEeee
Confidence 99999998877776 567899999999999999999999999999998543 232 23444 332 2334
Q ss_pred EecCCCEEEE-Eec----CcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 592 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 592 ~sp~g~~l~~-~~d----g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
|++++.++++ |.+ +.|+|||+++ +.++..+..+.+.+.+......++|.++++|+.|+.|++|++..+.. ..+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 5688888887 544 3799999985 56666654433344444444456789999999999999999987742 333
Q ss_pred ecccccCCCCccCceeeEEEEEcc
Q 004683 666 NLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 666 ~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
.. ..+..+.. +++|.|
T Consensus 301 ~~------~~s~~p~~--g~~f~P 316 (568)
T PTZ00420 301 NE------YKSCSPFR--SFGFLP 316 (568)
T ss_pred cc------cccCCCcc--ceEEcc
Confidence 21 11123344 788999
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=216.90 Aligned_cols=268 Identities=15% Similarity=0.189 Sum_probs=210.4
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCce-----------eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-----------RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 414 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~-----------~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~i 414 (737)
.++||+++..+++.+++|.-|++..++..... .....+..+|...|.+++.||||+|||+|+.|..|.|
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 38899999999999999999998865322101 1111110159999999999999999999999999988
Q ss_pred eeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCC
Q 004683 415 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 491 (737)
Q Consensus 415 Wd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~ 491 (737)
|+.++. +.++.+. +|.+.|.+++|- ...+++++ |+.|++|+++....+.++.+|
T Consensus 229 w~~~t~---------------------ehv~~~~--ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 229 WDCDTL---------------------EHVKVFK--GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred ecCccc---------------------chhhccc--ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 887643 2233222 799999999999 55677777 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
.+.|..+....-+ .+-+|+.|+++++|++.. .....+.++.+.+-|++|-.+ ..+++||.+|.|.+|++....+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkp--- 360 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKP--- 360 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCc---
Confidence 9999999888777 777777999999999943 445667889999999999754 4799999999999999987433
Q ss_pred eeeeecccCCCC--------CCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC----ceeEEecCCCCCCCeEEEEEcc
Q 004683 571 KFLHSFQTGLVP--------ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 571 ~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~----~~~~~~~~~~h~~~v~~~~~sp 637 (737)
+.+....|.- ++.+|++++..|....+++| .+|.|++|-+..+ +++..+. -.+.|++++|++
T Consensus 361 --lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 361 --LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSN 435 (479)
T ss_pred --eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEcc
Confidence 3322222211 11489999999999999995 8999999999876 3444443 378899999999
Q ss_pred CCCEEEEEe
Q 004683 638 DGKCIYVSC 646 (737)
Q Consensus 638 ~~~~l~sgs 646 (737)
+|+++++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999777653
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=6.5e-25 Score=220.91 Aligned_cols=279 Identities=16% Similarity=0.179 Sum_probs=222.1
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|..-|.+++.|...++++||+. |.|+|||+..... ...+..+........|.++... |+
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~------------------k~PvsqLdcl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN------------------KSPVSQLDCLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC------------------CCccccccccCcccceeeeEecCCCc
Confidence 8888999999999999999986 8999999874321 1111111111245677777777 99
Q ss_pred EEEEEe-CCeEEEEECCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 465 HLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
.|++|+ ..++.|||+......- .+.........++.+||. ..+++..||.|.|||+.+...++.|+||+..+.|+.
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 999999 7999999997654432 233333456788999999 888889999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeE
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~ 619 (737)
+++||..|.+|+-|++||.||++.+.......+. ..|.++..+|++.++++| .++.+.|......+. .
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-y 627 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-Y 627 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCCccc-e
Confidence 9999999999999999999999985432222211 689999999999999998 778898888743332 2
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+ +.|...|.++.|++.|+|+++.+.|+-+..|....|..+...+. ... |+++..+- |.++++||+
T Consensus 628 ql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~Ss--VlsCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 628 QL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSS--VLSCDISF-DDKYIVTGS 693 (705)
T ss_pred ee--cccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCc--ceeeeecc-CceEEEecC
Confidence 23 44799999999999999999999999999999999987776542 233 44777777 789999999
Q ss_pred CCCcEEEEec
Q 004683 700 TNGRVHVIEP 709 (737)
Q Consensus 700 ~Dg~V~iWd~ 709 (737)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888876
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.9e-24 Score=215.93 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=207.8
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCC
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 440 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~ 440 (737)
-.+.||+.... ..... +.. ..+.|.++.|-.||+.||+|...|.|+|+|..+.
T Consensus 48 ~rvqly~~~~~----~~~k~-~sr--Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-------------------- 100 (487)
T KOG0310|consen 48 VRVQLYSSVTR----SVRKT-FSR--FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-------------------- 100 (487)
T ss_pred cEEEEEecchh----hhhhh-HHh--hccceeEEEeecCCeEEEccCCcCcEEEeccccH--------------------
Confidence 46788887642 11111 222 4688999999999999999999999999984421
Q ss_pred CeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCe
Q 004683 441 KLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 514 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~ 514 (737)
..+..+ .+|..+|..+.|+ +..+++|+ |+.+++||+.+......+.+|.+.|.|.+|+|.. .+++|+.||.
T Consensus 101 -~iLR~~--~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 101 -VILRQL--YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred -HHHHHH--hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 111111 1699999999999 66788888 7899999999988766888999999999999987 8999999999
Q ss_pred EEEEecCCC-cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 515 ILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 515 I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
|++||+++. ..+.++. |..+|.++.+-|.|..+++++ ...|++||+.+|. +.+. ....|. ..|+|+++.
T Consensus 178 vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~----qll~-~~~~H~---KtVTcL~l~ 247 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG----QLLT-SMFNHN---KTVTCLRLA 247 (487)
T ss_pred EEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc----eehh-hhhccc---ceEEEEEee
Confidence 999999987 5666666 899999999999999999887 5689999999653 2222 222244 799999999
Q ss_pred cCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 594 PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 594 p~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
.++..|++ |-|+.|++||+.+.+.+..+.- .++|.+++.+|+++.++.|..||.+.+-+....
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 99999998 6999999999988999888854 789999999999999999999999887755443
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=228.97 Aligned_cols=279 Identities=18% Similarity=0.213 Sum_probs=218.8
Q ss_pred EEEEe-cCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE
Q 004683 393 RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 469 (737)
Q Consensus 393 ~v~fs-pdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~ 469 (737)
.+..+ |.++||+|||.||.|++|++..... ..+......+ +.|.+.|+.+... ++.|+++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asm--e~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASM--EHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC---------------Ccccchhhhh--hhhHhHHhhHHhhcCCCceEEe
Confidence 44444 5677899999999999999764221 0001111111 2699999999988 8899999
Q ss_pred e-CCeEEEEECCCC--cEEEEecCCCCCeEEEEE-cCCC-eEEEEECCCeEEEEecCCCc--EE--------EEEc-CCC
Q 004683 470 S-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TK--------AKLK-GHQ 533 (737)
Q Consensus 470 s-dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-s~~~-~l~sgs~dg~I~vwd~~~~~--~~--------~~l~-~~~ 533 (737)
+ |-+|++|+...+ -+..++..|...|.|+++ -++. .+|+|+-|+.|.+||++++. .+ ..+. |+.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9 999999999876 577888899999999999 6777 99999999999999999872 22 2233 788
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~ 612 (737)
.+|.+++.++.|..+++|+..+.+++||.++.. +.+. +. ||+ ..|..+..++||..+++ ++||+|++||+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimk-Lr-GHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMK-LR-GHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEecccccc----ceee-ee-ccc---cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 899999999999999999999999999999842 2233 33 888 79999999999999998 69999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
...+++.++.. |...|+++..+|+-..+++|+.||.|+.=|+.+......+... ++++. .+..+. +.
T Consensus 243 gqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--------daPv~--~l~~~~-~~ 309 (735)
T KOG0308|consen 243 GQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--------DAPVL--KLHLHE-HD 309 (735)
T ss_pred cccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--------CCchh--hhhhcc-cc
Confidence 99999999876 6777999999999999999999999999999985322222111 33343 555554 22
Q ss_pred CEEEEEECCCcEEEEecC
Q 004683 693 NRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~ 710 (737)
+-+-+++.|+.|+=|...
T Consensus 310 ~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCceeeeccccceecCCc
Confidence 334666788999999775
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.4e-24 Score=201.80 Aligned_cols=290 Identities=14% Similarity=0.122 Sum_probs=207.1
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.| |.+.|++++||.||++|++++.|++|++|+++.-.. ....++.... .-+-.+.+.|
T Consensus 82 LKg--H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nv---e~dhpT~V~F 140 (420)
T KOG2096|consen 82 LKG--HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNV---EYDHPTRVVF 140 (420)
T ss_pred hhc--cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccc---cCCCceEEEE
Confidence 666 999999999999999999999999999999874211 1112222111 1123456788
Q ss_pred e---CCEEEEEe-CCeEEEEECCC---CcEEEE--------e-cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc
Q 004683 462 R---GSHLFSAS-GGKISIFSLET---FQTLAT--------F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 462 s---~~~l~s~s-dg~i~vwd~~~---~~~~~~--------~-~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~ 524 (737)
. ...++++. ..++++|.... |..... | +.|...+..+-...++ +|++++.|..|.+|+++ |+
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 8 44555555 67899997642 221111 1 2445556666666677 99999999999999998 88
Q ss_pred EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 525 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV---GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~---~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
.+..+......-+..+.+|+|+++++++-.--|++|.+- .|+......+. -..||. ..|...+|+|+...+++
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEE
Confidence 888888777777889999999999999999999999863 22221111122 145777 89999999999999988
Q ss_pred -EecCcEEEEeCCC-------CceeEEecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc
Q 004683 602 -IHEGQIDVYEAPT-------LNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 671 (737)
Q Consensus 602 -~~dg~I~iwd~~~-------~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 671 (737)
+.||+++|||+.- .+.+++...+ ...+....+.++|+|+.|+.+. ...++++..++|+....+...
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--- 371 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--- 371 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh---
Confidence 8999999999752 1122222111 1234455899999999888764 467999999998876665421
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
++..+. +++|+| +|+++||++ |..+++..-
T Consensus 372 ----h~~~Is--~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 372 ----HSTTIS--SISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ----hcCcee--eEEecC-CCcEEeeec-ceeeeeecC
Confidence 233444 999999 899999996 567888763
No 106
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.4e-22 Score=202.97 Aligned_cols=349 Identities=16% Similarity=0.202 Sum_probs=249.2
Q ss_pred CCcceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCC--------eEEEeecCccCCCCceeeeecCCCCCC
Q 004683 318 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLE--------KSVNLKLQLINEPSECRTLLLPDNSFG 388 (737)
Q Consensus 318 ~~~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg--------~v~iW~~~~~~~~~~~~~~~l~~~~h~ 388 (737)
+....+.|.||.. +.++. ..||.-.+++|-.-| .|+|||... -.+... +.. ..
T Consensus 93 ee~~Qr~y~GH~ddikc~~-----------vHPdri~vatGQ~ag~~g~~~~phvriWdsv~---L~TL~V--~g~--f~ 154 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMA-----------VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT---LSTLHV--IGF--FD 154 (626)
T ss_pred hhhhcccccCCCCceEEEe-----------ecCCceeeccCcccccCCCcCCCeeeeccccc---ceeeee--ecc--cc
Confidence 3445566778877 44433 345555555554433 489999654 223222 222 56
Q ss_pred CCeEEEEEec--CCCEEEEEEC--CCcEEEeeccCCcc-----------------ccccc-cee---eeeEEeecCCCee
Q 004683 389 GRVVRLIYSH--SGDFLVALTQ--TATHKLWKWQSNKQ-----------------SLEEE-NVN---MESQLYQPSSKLV 443 (737)
Q Consensus 389 ~~V~~v~fsp--dg~~L~s~s~--dg~i~iWd~~~~~~-----------------~~g~~-~~~---~~~~l~~~~~~~~ 443 (737)
..|.|++||+ .|.+|+.... +.-+.|||++.+.. |++.. +.. .-+..|+...+.+
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l 234 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL 234 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce
Confidence 7899999997 4566555533 56789999987654 11110 000 0136788887766
Q ss_pred eeec--cCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEe
Q 004683 444 MTND--IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHC 519 (737)
Q Consensus 444 ~~~~--~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd 519 (737)
.+.. ..+.....|.|++|. +.-+++|. +|.|.||+..+.+..+....|++.|.+++.-.+|.|++|+.|..|..||
T Consensus 235 ~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 235 VKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD 314 (626)
T ss_pred EEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc
Confidence 5432 111234679999999 77788888 9999999998888887777999999999999999777799999999998
Q ss_pred cCCCc----------------------------------------EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 004683 520 PCTKK----------------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 559 (737)
Q Consensus 520 ~~~~~----------------------------------------~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~l 559 (737)
-.-.+ -.....+|......++.+|+...+++++.|+.+++
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 32000 00122457778889999999999999999999999
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
|+ ..+....+.+ . .++.++.|+|.| .+++| ..|...+.|.++...+..-.. ..+++.+.|+|+
T Consensus 395 W~--~~k~~wt~~~-----~-----d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 395 WN--DHKLEWTKII-----E-----DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPD 458 (626)
T ss_pred cc--CCceeEEEEe-----c-----CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec---CCceEEEEEcCC
Confidence 99 3222222222 2 678999999999 77775 889999999998665544432 788999999999
Q ss_pred CCEEEEEecCCeEEEEEcCCCe-eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 639 GKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 639 ~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
|.++|.|+.|+.|+||.+.... ...+...+ .+ ..++.+.|++ |+++|.+-+.|-.|-.|...
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--------~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--------SG-SPITHLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcEEEEeeee--------cC-ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence 9999999999999999997643 33333221 22 4466999999 89999999999999999554
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=199.03 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=213.1
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccC-CCCceeeeecCCCCCCCCeEEEEEecCCCEEE-EEECCCcEEEeeccCCcc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~-~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~-s~s~dg~i~iWd~~~~~~ 422 (737)
+.|+.||+.+|+++.|++|++|++..-. ....|.+..++ -+.-+.+.|+||-+-++ ++-..+++++|.+.....
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 4488899999999999999999987421 12234444344 34568999999977554 444567899998764332
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
|.....+ .-||- .+ ....|.-.|..+... +.++++++ |..|.+|++. |+.+..+......-...+
T Consensus 168 --G~~~~~~--v~~D~--~~-----f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 168 --GSGSHHF--VHIDN--LE-----FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred --CCCCccc--ccccc--cc-----cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 3322221 11331 00 111366677776666 78999999 9999999998 999988876666667789
Q ss_pred EcCCC-eEEEEECCCeEEEEecC---CC-----cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~---~~-----~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
.+|+| ++++++.--.|++|.+- .| ..+..++||++.|..++|+|+.+.+++.|.||++++||++-.-. ..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-~~ 314 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-AG 314 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe-cC
Confidence 99999 99999999999999863 22 23567899999999999999999999999999999999864211 01
Q ss_pred eeeeecccC----CCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 571 KFLHSFQTG----LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 571 ~~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+....+..+ |..+ +....+.++|+|+.|+++....+++|..++|+...++.. .|...|.+++|+++|+++++++
T Consensus 315 qDpk~Lk~g~~pl~aag-~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAG-SEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-IHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCchHhhcCCcchhhcC-CCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-hhcCceeeEEecCCCcEEeeec
Confidence 111111111 1101 344489999999999999889999999999887766654 4799999999999999999987
Q ss_pred cCCeEEEEE
Q 004683 647 KSGHVKVFD 655 (737)
Q Consensus 647 ~dg~I~vwd 655 (737)
|..+++..
T Consensus 393 -dr~vrv~~ 400 (420)
T KOG2096|consen 393 -DRYVRVIR 400 (420)
T ss_pred -ceeeeeec
Confidence 57777766
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.1e-23 Score=198.35 Aligned_cols=267 Identities=13% Similarity=0.115 Sum_probs=207.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
.+.|..+.|+|.+..|+.++.||++++|++.... +...+ .|..++.+++|. ...+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------------l~~~~---~~~~plL~c~F~d~~~~ 68 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------------LKLKF---KHGAPLLDCAFADESTI 68 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------------hhhhe---ecCCceeeeeccCCceE
Confidence 6889999999999999999999999999876421 11111 489999999999 8889
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
++|+ ||.|+.+|+.++.. ..+..|..+|.|+..++.. .+++|+.|++|++||.++......+. ....|.++...
T Consensus 69 ~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~-- 144 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS-- 144 (323)
T ss_pred EEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--
Confidence 9999 99999999997765 3456899999999999877 99999999999999999755555554 34478777664
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC----ceeE
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHTS 619 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~----~~~~ 619 (737)
|+.|++|+.|..|.+||+++... +.+.....-. ..+.++++-|++.-.++ +-||+|.+=.++.. +...
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred CCEEEEeecCceEEEEEcccccc----hhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 77899999999999999998432 2221112222 67999999998755555 79999887666544 2223
Q ss_pred EecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 620 QLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 620 ~~~~~~-------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
.|+.|. ...+|.+++|+|-...++||+.||.|.+||..+.+.+..+..- ...+..++|+. +|
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----------~~SI~slsfs~-dG 286 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----------ETSISSLSFSM-DG 286 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC----------CCceEEEEecc-CC
Confidence 333321 1357999999999999999999999999999999888877521 23345899999 89
Q ss_pred CEEEEEEC
Q 004683 693 NRIALGLT 700 (737)
Q Consensus 693 ~~las~s~ 700 (737)
..||+++.
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99999874
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.1e-23 Score=196.43 Aligned_cols=236 Identities=15% Similarity=0.214 Sum_probs=190.1
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 385 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 385 ~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
+.|.+.|++++. +|+|+|+||.|.+|+|||+..... .|.++ .|.+.|+++.|.
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll------~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----------------LGILL------SHAGSITALKFYPP 94 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----------------hccee------ccccceEEEEecCC
Confidence 349999999998 588999999999999999885322 22222 499999999999
Q ss_pred --CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 463 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 463 --~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
.++|++|+ ||.|.+|++....++.++++|.+.|+.++++|.+ .-++.+.|+.+++||+-+|+.-..+.- ....+.
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~ 173 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL 173 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence 23899999 9999999999999999999999999999999999 778888999999999999887655542 333455
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCcee
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 618 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~ 618 (737)
+.|+|.|.+++.++.+ .|-+|.+.+.. .+..+... ..+.++.|...+..++.+.|+.|.+||..+..+.
T Consensus 174 v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-----v~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRN-KIDIYQLDNAS-----VFREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred eEEcCCCCEEEEEecc-EEEEEecccHh-----Hhhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 9999999998888765 57889888732 22212111 3577777775544444468899999999998888
Q ss_pred EEecCCCCCCCeEEEEE--ccCCCEEEEEecCCeEEEEEcCCC
Q 004683 619 SQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 619 ~~~~~~~h~~~v~~~~~--sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
..+.. |...|-++.+ .|++.+|+++|.||.|+|||+...
T Consensus 243 ~~~~A--H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLA--HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeec--chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 88866 7899999885 378899999999999999999865
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=214.56 Aligned_cols=332 Identities=12% Similarity=0.119 Sum_probs=252.2
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceee
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
+.++.|+..|.+.+|++.. +.... ++++ +.+.|+++.=+|-=..+|.|..+|+|.|+++..+ +.+.++
T Consensus 173 NKIvvGs~~G~lql~Nvrt----~K~v~-~f~~--~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-----kil~sF 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRT----GKVVY-TFQE--FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-----KILMSF 240 (910)
T ss_pred eeEEEeecCCcEEEEEecc----CcEEE-Eecc--cccceeEeccCCcceEEEEeccCceEEEEEcccC-----cEEEEE
Confidence 4588999999999999995 44433 3777 7899999999999999999999999999887732 222222
Q ss_pred eeEEeecCCCeeeeeccCCCCC-CCeEEEEEe--CCE-EEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-
Q 004683 432 ESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD- 504 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~-~~V~~v~~s--~~~-l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~- 504 (737)
.|. +.|++++|. |+. +++|+ .|.+.+||++..+.+..+. .|.+.|....|.|..
T Consensus 241 -------------------k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 241 -------------------KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred -------------------EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 254 899999999 664 55565 6999999999888877776 888999999999998
Q ss_pred eEEEEECCCeEEEEecCC--C--cEEEEEcCCCcceEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCce------------
Q 004683 505 LFAFGFDDSSILVHCPCT--K--KTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKK------------ 567 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~--~--~~~~~l~~~~~~v~~l~~s-p~g~~l~s~s~dg~I~lwdl~~~~~------------ 567 (737)
.+++++.|..+++|=.++ | +.++.-.||..+..|+.|. .+|..+.+++.|++++.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 999999999888875544 3 3455567899999999997 6888899999898877776532100
Q ss_pred ---eec--------eeee--------------------------e------------cccC-CCCCCCCeEEEEEecCCC
Q 004683 568 ---LCS--------KFLH--------------------------S------------FQTG-LVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 568 ---~~~--------~~~~--------------------------~------------~~~~-~~~~~~~v~~l~~sp~g~ 597 (737)
... .++. + +... ..+....+++++.++.|+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 000 0000 0 0000 000125788999999999
Q ss_pred EEEEE-ecCcEEEEeCCCCceeEEec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc----
Q 004683 598 HLLSI-HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---- 671 (737)
Q Consensus 598 ~l~~~-~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~---- 671 (737)
+.+.| +.|.|-+|++++|-...++. ...|..+|++++...-++.+++++.+|.+.+||.++..+...+......
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 99986 88999999999998888873 2357999999999988999999999999999999987755444311000
Q ss_pred ------------------------------CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 672 ------------------------------QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 672 ------------------------------~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
..|| +.. +++++||| ||++|++++.|++|++||+.++...-..
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nr--itd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNR--ITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccc--eeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 1244 333 45999999 8999999999999999999999866444
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.2e-23 Score=196.16 Aligned_cols=299 Identities=16% Similarity=0.175 Sum_probs=218.3
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcc-cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 387 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 387 h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~-~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
|.+.|+++...+ .|+|+++|+.||.|.+||+++... ....++..- ...+......+|.-.|.++.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------KCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------eeeccccCCccceeeeeeeEEeee
Confidence 899999999987 699999999999999999986542 011111100 0001111122688999999998
Q ss_pred -CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC----eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 463 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 463 -~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~----~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
...+.+++ |.+++|||+.+-+....|.- ++.|.+-+++|-. .+|+|..|-.|++.|+.+|...+++.||...|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 56777777 99999999999887777753 4567788888854 78889999999999999999999999999999
Q ss_pred EEEEEeCCCCE-EEEEeCCCcEEEEeCCCCc-eee--------ceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecC
Q 004683 537 TCLAYSLSLNV-LVSSGADAQLCVWDAVGWK-KLC--------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 605 (737)
Q Consensus 537 ~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~-~~~--------~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg 605 (737)
.++.|+|...+ |++|+.||.|++||++... +.. ..++......|. +.+..++|+.+|.++++ +.|.
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCcc
Confidence 99999997766 7899999999999998631 100 001111122333 78999999999999998 6999
Q ss_pred cEEEEeCCCCceeEE-ecCCCCC---CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCcee
Q 004683 606 QIDVYEAPTLNHTSQ-LVPDKMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 681 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~-~~~~~h~---~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 681 (737)
.+++|+..+|+.... +-..-|. ..-..+. +.+...++---.++.+.++++-.|..+..+..| ...+
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------LKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------ccee-
Confidence 999999988763221 1110011 1111122 333344444445689999999999999988754 3334
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 682 PLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
.|.++-| +-+...+|..|+.+..|-+.
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -eEEeecC-chhhhhccccCCcccccccc
Confidence 4888999 77889999999999999883
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=4.8e-23 Score=215.60 Aligned_cols=366 Identities=18% Similarity=0.211 Sum_probs=259.3
Q ss_pred cceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCC-----------------cee---
Q 004683 320 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-----------------ECR--- 378 (737)
Q Consensus 320 ~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~-----------------~~~--- 378 (737)
.....+.||.+ +.+..|.... .+.-++|++|.|..||||.+....... .+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~--------~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLG--------GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eEEEEeeccchhhhhhhhhccC--------CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 34456678998 7776665542 256689999999999999876432111 010
Q ss_pred --eeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc------ccccc---ceee--------------
Q 004683 379 --TLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ------SLEEE---NVNM-------------- 431 (737)
Q Consensus 379 --~~~l~~--~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~------~~g~~---~~~~-------------- 431 (737)
++.+.. .||.+.|.++.|+|++..|+++|.|.++.+|......- .-|.. ...+
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 011111 35999999999999999999999999999998766521 00111 0001
Q ss_pred -----eeEEeec-CCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC----cEEEEecCCCCCeEEE
Q 004683 432 -----ESQLYQP-SSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYF 498 (737)
Q Consensus 432 -----~~~l~~~-~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~~ 498 (737)
..++|.. +...........||.+.|.+++|+ |.+|++.+ |.+-|++-.-.. ..+..-+-|....+|+
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 1256662 223334444455899999999999 99999999 999998865411 1222224677788999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecC-------------------------------------------CCc----------
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPC-------------------------------------------TKK---------- 524 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~-------------------------------------------~~~---------- 524 (737)
++-+.. .+++|.....+++|+.. +|.
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 998867 99999999999999763 000
Q ss_pred -----------------------EEEEEcCCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeec
Q 004683 525 -----------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 525 -----------------------~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~~~~~~~~~~~ 576 (737)
.++.+-||...|.+++.+|+|+.+|+++... .|++|+..++.. .+ .
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~-~ 567 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQ-E 567 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hh-e
Confidence 0112347888899999999999999998653 589999988532 22 2
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCcee-EEe-cCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT-SQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~-~~~-~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
..+|. -.|+.++|||||++|++ |.|.++.+|........ ..+ ....|..-|+++.|+|++.+++|+|.|.+|.|
T Consensus 568 L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 568 LEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred ecccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 34666 78999999999999998 89999999997543211 111 02357899999999999999999999999999
Q ss_pred EEcCCC--eeEEEEecccccCCCCccCceeeEEEEEccCCCC----EEEEEECCCcEEEEecC
Q 004683 654 FDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN----RIALGLTNGRVHVIEPL 710 (737)
Q Consensus 654 wd~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~----~las~s~Dg~V~iWd~~ 710 (737)
|..... +.+..+... . .+.. +++++|.|.+.. .++.|-..|.|.+|...
T Consensus 645 W~~~~~~d~~i~~~a~~---~---~~~a--VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACL---K---FSLA--VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EeccCchhhhhhhhchh---c---cCCc--eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999887 433332111 0 1223 448888876544 78999999999999965
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.1e-22 Score=206.80 Aligned_cols=355 Identities=14% Similarity=0.133 Sum_probs=256.9
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
.....++.+.+.+|.+..||.|.||++.. .-+....+.| +....|.+++|++.| .|.+.+.+|+|.-||+.+..
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g-~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHG-PEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCC----CceeeEEEec-CCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence 33444777888899999999999999994 6666655766 246789999999555 58999999999999999866
Q ss_pred c-----cccccceee----------------eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEE
Q 004683 422 Q-----SLEEENVNM----------------ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 477 (737)
Q Consensus 422 ~-----~~g~~~~~~----------------~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vw 477 (737)
. ..|..+-++ ....++...+.+..........+.|.+++|+ +..+++|+ ||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 5 222222111 1233444555554444444467899999999 77799999 9999999
Q ss_pred ECCCCcEEEEec--------CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEE
Q 004683 478 SLETFQTLATFA--------NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 549 (737)
Q Consensus 478 d~~~~~~~~~~~--------~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~ 549 (737)
|+.++..+.... +...-|+++.+-.++.|++|...|+|.+||...|..++.+..|...|.+++.++++.+++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 999988776321 123357888888788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceee---------ce------------------------eeee---------------------
Q 004683 550 SSGADAQLCVWDAVGWKKLC---------SK------------------------FLHS--------------------- 575 (737)
Q Consensus 550 s~s~dg~I~lwdl~~~~~~~---------~~------------------------~~~~--------------------- 575 (737)
+++.|+.|..|...+..... .. +...
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a 341 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVA 341 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecC
Confidence 99999998877665431100 00 0000
Q ss_pred -------cc---------------cCCC----------CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCC--------
Q 004683 576 -------FQ---------------TGLV----------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-------- 615 (737)
Q Consensus 576 -------~~---------------~~~~----------~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~-------- 615 (737)
+. .++. ++...|.+.+.||+|++++.+.=...+||.+...
T Consensus 342 ~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v 421 (691)
T KOG2048|consen 342 PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINV 421 (691)
T ss_pred ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEe
Confidence 00 0000 0234688899999999999876455555544320
Q ss_pred ------------------------------------------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 616 ------------------------------------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 616 ------------------------------------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
+.+..+........|+.+..||+|+|+|+.+.+|.|.+
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v 501 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV 501 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEE
Confidence 00001111112467899999999999999999999999
Q ss_pred EEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
|++++++....... -...+++++++|.+.+.|+.+..|+.|.-+|++..
T Consensus 502 ~nl~~~~~~~l~~r----------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 502 YNLETLESHLLKVR----------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred EEcccceeecchhc----------cCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 99999876554421 12446699999767889999999999999999544
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=219.41 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=214.0
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecC----------------------C--------CCCCCCeEEEEEecCCCE
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLP----------------------D--------NSFGGRVVRLIYSHSGDF 402 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~----------------------~--------~~h~~~V~~v~fspdg~~ 402 (737)
.++++++|++|++|+++........++-.+. + .+...++.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4789999999999998852211111110000 0 123457999999999999
Q ss_pred EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCeEEE
Q 004683 403 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISI 476 (737)
Q Consensus 403 L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~i~v 476 (737)
||+|..-|+++||++....+ ....+.|...|.|+.|+ .++||+++ |.-|.|
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~-----------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEY-----------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ecccCccCceEEEEehhhhh-----------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 99999999999999875332 11112699999999999 56889999 999999
Q ss_pred EECCC-CcEEEEecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCCCcEEEEEcCC-----CcceEEEEEeCCCCE
Q 004683 477 FSLET-FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNV 547 (737)
Q Consensus 477 wd~~~-~~~~~~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~~~-----~~~v~~l~~sp~g~~ 547 (737)
||+.. ...++++.+|...|+++.|...| .+++++.|..|.+--.+.......+..| ...+..++..|..++
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 99965 45678889999999999998777 7889999988765433321112222222 356889999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCC
Q 004683 548 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 548 l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h 626 (737)
+++++.|+.|+|||+.+++..+... -..+|. +....+...|.|.|+++ +.|.++.++|..+|+++.+..+ |
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FK---gs~~~e---G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G--H 682 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFK---GSRDHE---GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG--H 682 (1080)
T ss_pred EEEEecccceEEEeccccceeeeec---ccccCC---CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC--c
Confidence 9999999999999999965433211 122333 67788999999999999 5999999999999999999876 7
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECch
Confidence 89999999999999999999999999999864
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7e-24 Score=195.91 Aligned_cols=244 Identities=17% Similarity=0.196 Sum_probs=194.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---- 462 (737)
|.+.|..+...--|++|||||+|++|+|+.+.++.. ..++..+. ||.++|+.++|.
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------s~ll~~L~--Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------SKLLAELT--GHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------ceeeeEec--CCCCCeeEEeeccccc
Confidence 899999999988999999999999999999875321 12333333 899999999998
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEE--EEecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCCC---cEEEEEcCCC
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKGHQ 533 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~---~~~~~l~~~~ 533 (737)
|.+||+++ ||.|.||.-.+|+-. ..+..|...|++++|.|.+ .|++++.||.|.+.+.++. ...+....|.
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999 999999998887543 3445899999999999987 8999999999999987754 2234456799
Q ss_pred cceEEEEEeCC---C-----------CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC---
Q 004683 534 NRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--- 596 (737)
Q Consensus 534 ~~v~~l~~sp~---g-----------~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--- 596 (737)
-.|++++|.|. | +.|++|+.|+.|+||+...++ -.+.....+|. ..|+.++|.|.-
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVGLP 222 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccCCC
Confidence 99999999985 4 569999999999999998752 22333466787 899999999974
Q ss_pred -CEEEE-EecCcEEEEeCCCC-ce-eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 597 -IHLLS-IHEGQIDVYEAPTL-NH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 597 -~~l~~-~~dg~I~iwd~~~~-~~-~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.+|++ +.||++.||..+.. +. ..++. +.....+.++.||+.|+.|++++.|+.|.+|.-..
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 56777 59999999987632 11 11111 12367799999999999999999999999998553
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.6e-23 Score=216.66 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=209.0
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEE-EEEec-CCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~-v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
-++..++++|.||++++|+-... .......+.+ |.+-|.+ ++|-+ ++-.+++|+.|++|.+|...+.
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~---~~l~~~~~~~--~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------ 91 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGK---QYLETHAFEG--PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------ 91 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCc---ccccceeccc--CcceeeccceeccccCcceEeecccceEEEEecCCC------
Confidence 34567999999999999997642 2222233444 6777776 77775 4456999999999998876532
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 504 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 504 (737)
.....+. +|...|+|++.. ...+++|+ |.++++|.. +++...+.+|...|+++..-|++
T Consensus 92 ---------------~P~~~Lk--gH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 92 ---------------EPLYTLK--GHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred ---------------Cchhhhh--ccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC
Confidence 2223233 899999999977 44599999 999999986 56777799999999999999999
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 584 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
.+++|+.|.+|++|.- ++.+++|.+|+..|+.+++-+++ .+++++.||.|++|++.. ..+. -..+|+
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght--- 219 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT--- 219 (745)
T ss_pred cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc---
Confidence 9999999999999974 78899999999999999999875 588999999999999965 3333 245676
Q ss_pred CCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 585 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.-|.++....++..+++ |.|++++||+.. .+.+.+..+ ...|+++.+-++|. +++|+.||.||||....
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 78999997777777776 699999999985 777777542 56899999888887 66778899999998763
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.9e-21 Score=203.14 Aligned_cols=278 Identities=15% Similarity=0.120 Sum_probs=198.0
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEeeccCCcccccccce
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L-~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
+..+++++.|+.+.+||+.+ +.+... +.+ | ..+.+++|+|+|+.+ ++++.++.|++||..++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t----~~~~~~-~~~--~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------- 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT----LEVTRT-FPV--G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------- 64 (300)
T ss_pred CcEEEEecCCCEEEEEECCC----CceEEE-EEC--C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------
Confidence 35688999999999999874 344333 443 3 447789999999977 556678999998876422
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-e-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 504 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~- 504 (737)
...... .+ ..+..++|+ ++.++++ + ++.+++||+.+++.+..+..+ ..+.+++|+|++
T Consensus 65 -------------~~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~ 127 (300)
T TIGR03866 65 -------------VIGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGK 127 (300)
T ss_pred -------------EEEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCC
Confidence 211111 12 224567888 6666554 4 799999999988887777532 346789999999
Q ss_pred eEEEEECCC-eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 505 LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 505 ~l~sgs~dg-~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
.+++++.++ .+.+||..+++....... ...+.+++|+|+|++++++ ..++.|++||+.+++........ ....+.
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~- 204 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHP- 204 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-cccccc-
Confidence 888887765 577889988877655432 3456789999999988654 46899999999986443221111 001010
Q ss_pred CCCCeEEEEEecCCCEEEE--EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCC
Q 004683 583 ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTL 659 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~ 659 (737)
.......++|+|+++++++ +.++.|.+||.++++.+..+.. ...+.+++|+|+|++|+++ +.+|.|.+||+.++
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 0023457899999998665 3567899999998887765532 4578899999999999886 46899999999999
Q ss_pred eeEEEEec
Q 004683 660 ELRCQINL 667 (737)
Q Consensus 660 ~~~~~~~~ 667 (737)
+.+..+..
T Consensus 282 ~~~~~~~~ 289 (300)
T TIGR03866 282 KVIKSIKV 289 (300)
T ss_pred cEEEEEEc
Confidence 99888853
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.7e-23 Score=210.10 Aligned_cols=251 Identities=15% Similarity=0.243 Sum_probs=194.1
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004683 387 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 462 (737)
|.+.|+.+.+-|... .+|+.+..+.|.|||...... . -...|.+...+...+|...-.+++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s----~---------~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPS----K---------PKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCC----c---------ccccccCCCceEEEeeccccccccccccc
Confidence 899999999999765 555567789999999875322 0 00111111112222788877889999
Q ss_pred CCEEEEEe-CCeEEEEECCCCc-------EEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecC--CCcEEEEEc
Q 004683 463 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK 530 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~--~~~~~~~l~ 530 (737)
...+++++ |++|++||+.... ....+.+|...|..++|++-. .|++++.|+.+.|||++ +.++.+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 56778888 8999999996532 345678999999999999988 89999999999999999 566677888
Q ss_pred CCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-E-EecCcE
Q 004683 531 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQI 607 (737)
Q Consensus 531 ~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~-~~dg~I 607 (737)
+|...|+|++|+| ++..||+||.|++|.+||+|.-. .++. ...+|. ..|..+.|+|+...++ + |.|+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence 8999999999999 56779999999999999999832 3555 355676 7999999999875555 4 499999
Q ss_pred EEEeCCCCcee------------EEecCCCCCCCeEEEEEccCCCE-EEEEecCCeEEEEEcCC
Q 004683 608 DVYEAPTLNHT------------SQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTST 658 (737)
Q Consensus 608 ~iwd~~~~~~~------------~~~~~~~h~~~v~~~~~sp~~~~-l~sgs~dg~I~vwd~~~ 658 (737)
.+||+..-... .-|.-.+|...|..+.|+|+..+ +++.++|+.+.||....
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642211 12444568999999999998776 55788999999999763
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.6e-22 Score=191.12 Aligned_cols=268 Identities=13% Similarity=0.094 Sum_probs=199.0
Q ss_pred ccccCC-CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 344 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 344 ~~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
+..||| ....++.+|.||+||+|++... +......... |.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~---g~~~~ka~~~--~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNS---GQLVPKAQQS--HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecC---Ccccchhhhc--cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 345888 5566668999999999999862 3322222333 899999999999999999999999999999875432
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C--CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 497 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~--~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 497 (737)
.+. +.|..+|.++.|- . ..|++|+ |.+|+.||.+....+.++.-.+ ++.+
T Consensus 107 ---------------------~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa 161 (347)
T KOG0647|consen 107 ---------------------SQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYA 161 (347)
T ss_pred ---------------------eee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeee
Confidence 111 1599999999999 2 3689999 9999999999988888876443 4555
Q ss_pred EEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE--cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 498 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l--~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
+.. -. +++++..++.|.+|+++++...... ....-.++|++..+|....+.|+-+|.+.+..+..+.......++
T Consensus 162 ~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 162 ADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred hhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 443 23 7888889999999999876432211 112345789999998888899999999999988874322222211
Q ss_pred --ecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 575 --SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 575 --~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
+-.....+.-..|.+|+|+|....|++ |+||++..||-.....+.+... |..+|++.+|+.+|.+++-+
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--CCCccceeEecCCCCEEEEE
Confidence 000000001257889999999888887 8999999999987777776654 68999999999999988743
No 120
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=3.9e-22 Score=208.90 Aligned_cols=340 Identities=13% Similarity=0.111 Sum_probs=236.7
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCC---EEEEEECCCcEEEeeccCCcccccccce
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~---~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
.+|.|+.+..|.++.-.. ..--+...+.| |++.|.+++|...+. +|||+|.|..|+||.+.-....+ ....
T Consensus 161 lla~Ggs~~~v~~~s~~~---d~f~~v~el~G--H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~ 234 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSA---DSFARVAELEG--HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNER 234 (764)
T ss_pred EEEecCcceEEEEeccCC---cceeEEEEeec--cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-cccc
Confidence 456677777778887652 22223345777 999999999987554 89999999999999987543201 0000
Q ss_pred eeee----------EEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC--cEEEEe-----c
Q 004683 430 NMES----------QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATF-----A 489 (737)
Q Consensus 430 ~~~~----------~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~--~~~~~~-----~ 489 (737)
.... .+-... -.+.......||.+.|.++.|+ +..|++++ |.++.+|...+. --+... .
T Consensus 235 e~~~t~~~~~~~f~~l~~i~-~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g 313 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQ-YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG 313 (764)
T ss_pred ccccccccCCceeeeeeeEE-EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc
Confidence 0000 000000 0000011122899999999999 66788888 999999987643 333322 2
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC---cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 004683 490 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 565 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~---~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~ 565 (737)
+...+.....|+|++ .+++-+..|..++|..... .......||...|..++|+|.|.++++++.|.+-|+|-.-..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 344568899999999 9999999999999983322 234456789999999999999999999999998887633200
Q ss_pred c--------------------eee-------------------------------c----------------------ee
Q 004683 566 K--------------------KLC-------------------------------S----------------------KF 572 (737)
Q Consensus 566 ~--------------------~~~-------------------------------~----------------------~~ 572 (737)
+ .+. . ++
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 0 000 0 00
Q ss_pred e---------------ee----------------------------cccCCCCCCCCeEEEEEecCCCEEEE-Eec----
Q 004683 573 L---------------HS----------------------------FQTGLVPETTIVNHIQFHPDQIHLLS-IHE---- 604 (737)
Q Consensus 573 ~---------------~~----------------------------~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d---- 604 (737)
. ++ -.-| +...|.+++.+|+|+.+|+ +..
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG---HGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG---HGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc---CceeEEEEEecCCCCEEeehhhhCCcc
Confidence 0 00 0001 3478999999999999998 322
Q ss_pred -CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE-EEEecccccCCCCccCceee
Q 004683 605 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 605 -g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~-~~~~~~~~~~~g~~~~~v~~ 682 (737)
..|++|+..+...++.+.+ |.-.|+.++|||||++|++.|.|.++.+|........ ..+.. ... |..-|+
T Consensus 551 hAvI~lw~t~~W~~~~~L~~--HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~----~k~-HtRIIW- 622 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEG--HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC----LKA-HTRIIW- 622 (764)
T ss_pred ceEEEEEeccchhhhheecc--cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc----ccc-cceEEE-
Confidence 3599999998888877765 7999999999999999999999999999998543211 11110 111 234455
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
++.|+| ++.+|||+|.|.+|+||.....
T Consensus 623 -dcsW~p-de~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 623 -DCSWSP-DEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -EcccCc-ccceeEEecCCceEEEEeccCc
Confidence 999999 8999999999999999999887
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.7e-23 Score=209.30 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=212.0
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
..|...+.+.||+ .|.|+|||+.......-..+ |+-.....-|.++..+|||+.|++|+.-.++.|||+.....
T Consensus 426 tIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--- 499 (705)
T KOG0639|consen 426 TISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--- 499 (705)
T ss_pred EecCCcceeEecC-CCeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---
Confidence 3454555555555 68899999986321111111 22211357899999999999999999999999999875322
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 502 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 502 (737)
.+...+. ...-...+++.+ .+..+++. ||.|.|||+.+...++.|++|.+.+.||.+++
T Consensus 500 ----------------rikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 500 ----------------RIKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred ----------------chhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 1111111 122345566777 55555555 99999999999999999999999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
|| .|-+|+-|.+|+.||++++..+.... ..+.|.++..+|++.++++|-.++.+.|......+ ..+ ..-|.
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-----kyq--lhlhe 633 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-----KYQ--LHLHE 633 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc-----cee--ecccc
Confidence 99 99999999999999999987665443 46789999999999999999999999888776522 122 22344
Q ss_pred CCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 582 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
..|.++.|++.|+++++ |.|+-+..|....|..+...+. ..+|.++.+|.|.+++++|+.|....||.+
T Consensus 634 ---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999998 7999999999999988776643 789999999999999999999988888875
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=8.9e-23 Score=211.74 Aligned_cols=294 Identities=16% Similarity=0.118 Sum_probs=209.0
Q ss_pred EEEEEecC---CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 392 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 392 ~~v~fspd---g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
.++.|++. ...|+.+..||.|.++|..... +.++...+.... .|...|..+.|. ...|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~--------------fr~ee~~lk~~~---aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV--------------FRLEERQLKKPL---AHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh--------------cchhhhhhcccc---cccceeEeeccCCCceeE
Confidence 44677653 3468888889999999976422 122222222211 599999999999 4567
Q ss_pred EEEe-CCeEEEEECCCCcEEEE--ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc-----------------
Q 004683 467 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----------------- 524 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~----------------- 524 (737)
++++ |.++++||+++++++.. +.+|...|.+++|.|++ .|++|+.||.|.|||++-..
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 8887 99999999999888876 78999999999999998 89999999999999987321
Q ss_pred ---E-------EEEEcCCCcceEE---EEEeCCCCEEEEEeC-CCcEEEEeCCCCceeec-eeee--ecccCCCCCCCCe
Q 004683 525 ---T-------KAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCS-KFLH--SFQTGLVPETTIV 587 (737)
Q Consensus 525 ---~-------~~~l~~~~~~v~~---l~~sp~g~~l~s~s~-dg~I~lwdl~~~~~~~~-~~~~--~~~~~~~~~~~~v 587 (737)
. +...+.+...|.+ +.+..|...||+++. |+.|+|||++....... .+.. .++. |......+
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-~skrs~G~ 274 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-HSKRSVGQ 274 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC-cccceeee
Confidence 0 1112234445555 666778889999888 99999999997432211 1111 0111 11011457
Q ss_pred EEEEEecCCCEEEE-EecCcEEEEeCCCCc--eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEE
Q 004683 588 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 664 (737)
Q Consensus 588 ~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~ 664 (737)
.++.....|.+|.+ |.|+.|+.|++.+.. ++..+.+.........-..+||+.++++|+.|...++|.+.+.+.-..
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 78888888888887 799999999997643 444444322222333445689999999999999999999998764333
Q ss_pred EecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 665 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 665 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+.. || .+.+++|+|.|..-.-+|++++|-+++||++..+
T Consensus 355 ~l~------Gh---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL------GH---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh------Cc---ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 221 33 3556699999876667888899999999999654
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=204.48 Aligned_cols=288 Identities=17% Similarity=0.226 Sum_probs=226.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
..+|.++|||.+.+.||.+-.||.|.||++... .+......++.+..|.+++|+ +..|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------w~~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------WFLEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------ceeeEEEecCCCCceeeEEEccCCeE
Confidence 578999999999999999999999999987743 222222333567789999999 8888
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE--EEcCCCcceEEEEEe
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYS 542 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~--~l~~~~~~v~~l~~s 542 (737)
++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.+..++...+.... .+...++.|.+++|+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 8888 9999999999999999999999999999999999 99999999988888887776543 344457899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeee--ecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeE
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~ 619 (737)
|++..+++|+.||.|++||...+........+ .+..+.. .-|+++.+-.++. +++| +.|+|.+||...+..++
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecCc-EEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999986543311111 1222111 5688888887764 5554 78999999999999999
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+.. |...|.+++.++++..+++++.|+.|.-|...++...+.... ...+|.+.+. +++..+ ..+++|+
T Consensus 240 S~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----~r~~h~hdvr--s~av~~---~~l~sgG 308 (691)
T KOG2048|consen 240 SHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----RRDLHAHDVR--SMAVIE---NALISGG 308 (691)
T ss_pred hhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----cccCCcccce--eeeeec---ceEEecc
Confidence 8876 689999999999999999999999999999887754332221 1122344555 777766 3888898
Q ss_pred CCCcEEEEecCC
Q 004683 700 TNGRVHVIEPLE 711 (737)
Q Consensus 700 ~Dg~V~iWd~~~ 711 (737)
.|+.+.+=....
T Consensus 309 ~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 309 RDFTLAICSSRE 320 (691)
T ss_pred eeeEEEEccccc
Confidence 998887765543
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.8e-23 Score=189.87 Aligned_cols=254 Identities=12% Similarity=0.113 Sum_probs=197.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC---cEEEEecCCCCCeEEEEEcC--CC-eEEEEECCCeEEEEecC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~-~l~sgs~dg~I~vwd~~ 521 (737)
.|.+.|..+... |+.|++|+ |++|+|+.+.+. +.+..+.+|.++|+.++|.. .| .||+++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 588999888777 99999999 999999999764 56778899999999999965 56 99999999999999988
Q ss_pred CCcE--EEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC--
Q 004683 522 TKKT--KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-- 595 (737)
Q Consensus 522 ~~~~--~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-- 595 (737)
+|+- ...+..|...|++++|.|. |-.|++++.||.|.+.+.++.. ......+...|. -.|++++|.|.
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~ 162 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA 162 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence 7743 3456679999999999995 4579999999999999988631 122223555676 68999999987
Q ss_pred -C-----------CEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEEEcCC
Q 004683 596 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 596 -g-----------~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~----~~l~sgs~dg~I~vwd~~~ 658 (737)
| +.|++ |.|..|+||+..+++-+..-...+|...|+.++|.|.- .+++++|.||+|.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 4 45777 59999999999886543332234589999999999954 5799999999999998763
Q ss_pred CeeEEEEec-ccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 659 LELRCQINL-TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 659 ~~~~~~~~~-~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
......... +.+ ...++ .++||+ .|++|+.++.|+.|.+|.-. .+.+|...+
T Consensus 243 e~e~wk~tll~~f------~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke~-~~Gkw~~v~ 295 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF------PDVVW--RVSWSL-SGNILAVSGGDNKVTLWKEN-VDGKWEEVG 295 (299)
T ss_pred ccCcccccccccC------CcceE--EEEEec-cccEEEEecCCcEEEEEEeC-CCCcEEEcc
Confidence 211111111 111 23456 999999 69999999999999999874 455776543
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.4e-22 Score=199.49 Aligned_cols=283 Identities=14% Similarity=0.186 Sum_probs=220.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC-
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS- 464 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~- 464 (737)
.++|++|.|+|..+.|++|+.|++++||.+..... ..++.+. --..+|.+.+|. |.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~~ 271 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGHS 271 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCce
Confidence 57899999999999999999999999998764322 1111111 135788899999 76
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEE--ecCCC-CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 465 HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~--~~~~~-~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
.+++++ ....+.||+.+++..+. ..++. ..+..+.++|++ +|+..+..|.|.+....+++.+.+++ ..+.|..+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 677777 78999999998765443 23443 356788899999 99999999999999999999998888 57889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCC----
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---- 614 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~---- 614 (737)
+|+.+++.|++++.+|.|.+||++.. .+++++..... -.-+++|.+++|.++|+| ..|.|.|||.++
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 99999999999999999999999984 33443332211 244578889999999996 669999999653
Q ss_pred --CceeEEecCCCCCCCeEEEEEccCCCEEEEEec--CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 615 --LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 615 --~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~--dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
.+++..+.. -...|+++.|+||++.||.+|. +..+++-.+.+......++.. .. .--+++|++|+|
T Consensus 423 ~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~------~vg~vtc~aFSP- 492 (514)
T KOG2055|consen 423 TNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NT------KVGHVTCMAFSP- 492 (514)
T ss_pred CCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CC------cccceEEEEecC-
Confidence 345544432 2678999999999999997775 578999999887766555543 11 112356999999
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004683 691 EPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd~~ 710 (737)
.+.++|.|..+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 78999999999999999875
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=202.99 Aligned_cols=247 Identities=13% Similarity=0.109 Sum_probs=194.3
Q ss_pred CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 463 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
+.+++++. ...+.+|.+..........--.+.|.|++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 67788887 5789999987655544333446689999999999 88888899999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCC----ceeeceeeeecccCCCCCCCCeEEEEEecCC--CEEEE-EecCcEEEEeC
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~-~~dg~I~iwd~ 612 (737)
.|+-||.++++||.||.|.+|++..- ......+++ ...+|+ -+|+++...+.| ..+++ |.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987531 111234444 456677 789999988764 45666 79999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe--eE----EEEec---ccccCCCCccCceeeE
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQINL---TAYAQPGTISLELYPL 683 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~--~~----~~~~~---~~~~~~g~~~~~v~~~ 683 (737)
..+..+.++.. ...+.+++.+|.++.+++|+++|.|.+.++.... .. +.... ......||.+. ..++
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~IT 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAIT 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-ccee
Confidence 99999988865 6789999999999999999999999998876543 11 10000 01122355441 3355
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
|++.+- ||.+|++|+.||.|.|||+.+.++.-..
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 899998 8999999999999999999988755433
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.3e-21 Score=197.99 Aligned_cols=272 Identities=17% Similarity=0.138 Sum_probs=197.1
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCeEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKIS 475 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~i~ 475 (737)
+..+++++.|+.+.+||..++ ....... .+ ..+.+++|+ ++.+ ++++ ++.|+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---------------------~~~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---------------------EVTRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQ 56 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---------------------ceEEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEE
Confidence 356789999999999887632 2222221 23 335678998 6665 4555 79999
Q ss_pred EEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC
Q 004683 476 IFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 553 (737)
Q Consensus 476 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~ 553 (737)
+||..+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.
T Consensus 57 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 57 VIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEec
Confidence 999999988877765443 4678999999 665 455689999999999887777763 345688999999999999887
Q ss_pred CC-cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCC---C-
Q 004683 554 DA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M- 626 (737)
Q Consensus 554 dg-~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~---h- 626 (737)
++ .+.+||..+++.. ..+..+ ..+.+++|+|+|+++++ + .++.|++||+++++.+..+.... +
T Consensus 135 ~~~~~~~~d~~~~~~~-----~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIV-----DNVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred CCCeEEEEeCCCCeEE-----EEEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 75 4677898874332 212222 34568999999998865 4 58999999999988776654211 1
Q ss_pred -CCCeEEEEEccCCCEEEE-EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE-ECCCc
Q 004683 627 -DLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGR 703 (737)
Q Consensus 627 -~~~v~~~~~sp~~~~l~s-gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~-s~Dg~ 703 (737)
......++|+|+++++++ .+.++.+.+||+.+++....+.. ...+ .+++|+| ++.+|+++ +.+|.
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~--~~~~~~~-~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRV--WQLAFTP-DEKYLLTTNGVSND 272 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCc--ceEEECC-CCCEEEEEcCCCCe
Confidence 123457889999998655 45567899999999887665431 2224 4899999 78888776 56899
Q ss_pred EEEEecCCCceeeeec
Q 004683 704 VHVIEPLESEVEWGKL 719 (737)
Q Consensus 704 V~iWd~~~~~~~w~~~ 719 (737)
|++||+.+++......
T Consensus 273 i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 273 VSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEECCCCcEEEEEE
Confidence 9999999998765553
No 128
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.8e-22 Score=222.52 Aligned_cols=263 Identities=14% Similarity=0.194 Sum_probs=207.1
Q ss_pred CCCCeEEEEEecCCCEEEEEE--CCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCC
Q 004683 387 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s--~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~ 464 (737)
++..|.++..+|||..++||+ .|+.++||+... +.+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~---------------vl~--------------------------- 49 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP---------------VLD--------------------------- 49 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecccc---------------ccc---------------------------
Confidence 466799999999999999999 899999998652 111
Q ss_pred EEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC------------------CcE
Q 004683 465 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------------------KKT 525 (737)
Q Consensus 465 ~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~------------------~~~ 525 (737)
....+|..-.+.+.++..|.+.|+|+.|+||| +||+|+.|+.|.+|.... .++
T Consensus 50 --------~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~ 121 (942)
T KOG0973|consen 50 --------EKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV 121 (942)
T ss_pred --------hhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence 00111211245566777899999999999999 999999999999998762 135
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Eec
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 604 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d 604 (737)
+..+.+|.+.|..++|+|++.++++++.|++|.+||.++. ..+. ...+|. +.|..+.|.|-|+|+++ +.|
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence 6788999999999999999999999999999999999983 3333 455676 79999999999999999 899
Q ss_pred CcEEEEeCCCCceeEEecCCC----CCCCeEEEEEccCCCEEEEEec----CCeEEEEEcCCCeeEEEEecccccCCCCc
Q 004683 605 GQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l~sgs~----dg~I~vwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
++|++|++.+....+.+..+- -...+..+.|||||++|++... -.++.|.+..+.+.-..+. ||
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH- 264 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GH- 264 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cC-
Confidence 999999987766666654321 1456889999999999997543 3578899998888777776 44
Q ss_pred cCceeeEEEEEccC----CCC------------EEEEEECCCcEEEEecCCCceeeee
Q 004683 677 SLELYPLVIAAHPL----EPN------------RIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 677 ~~~v~~~~v~~sp~----d~~------------~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
..++. ++.|+|. ... .+|+|+.|++|-||.....++....
T Consensus 265 ~~p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 265 SAPVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred CCceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 33455 8999973 111 6899999999999999887766443
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-21 Score=187.92 Aligned_cols=255 Identities=17% Similarity=0.222 Sum_probs=197.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
...+.|+++.|+ ++.|++++ ||++++||+........+ .|..++.+++|.++..+++|+-||.|+.+|+.++...
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-
Confidence 357889999999 66677777 999999999877554444 6778999999988669999999999999999987654
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCc
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 606 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~ 606 (737)
.+..|..+|.|+.+++....+++||.|++|++||.+.. ....++..+ ..|.++..+ |..|++ +.+..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----~~~~~~d~~-----kkVy~~~v~--g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----VVVGTFDQG-----KKVYCMDVS--GNRLVVGTSDRK 156 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----ccccccccC-----ceEEEEecc--CCEEEEeecCce
Confidence 45559999999999998889999999999999999961 222222222 467777665 566766 69999
Q ss_pred EEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC----eeEEEEecccccCCCCccCceee
Q 004683 607 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL----ELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
|.+||+++...........-...+.++++-|++.=.++++-||.|.+=.+... +....+..|.....+. .....|
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~-~~~yPV 235 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT-EIIYPV 235 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc-eEEEEe
Confidence 99999998765443333233667899999998888899999999998777665 4445666665554442 222335
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
.+++||| -...||||+.||.|.+||+.+.++....+..
T Consensus 236 Nai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 236 NAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred ceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 6999999 5779999999999999999998876655543
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.3e-20 Score=190.57 Aligned_cols=342 Identities=12% Similarity=0.141 Sum_probs=242.2
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC--------cEEEee
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--------THKLWK 416 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg--------~i~iWd 416 (737)
.-+.|.|..+.....-+ .+++.+. .. ++. .-| |+..|.|++.+||.-.+++|-..| .++|||
T Consensus 71 ly~lptgE~vyfvA~V~--Vl~n~ee----~~-Qr~-y~G--H~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWd 140 (626)
T KOG2106|consen 71 LYLLPTGELVYFVAAVG--VLYNWEE----RS-QRH-YLG--HNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWD 140 (626)
T ss_pred eEEccCccEEEEeccEE--EEEeehh----hh-ccc-ccC--CCCceEEEeecCCceeeccCcccccCCCcCCCeeeecc
Confidence 33667787777665433 4444442 11 122 334 999999999999988888776555 589999
Q ss_pred ccCCcc-------------------cccccceee------eeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEE
Q 004683 417 WQSNKQ-------------------SLEEENVNM------ESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFS 468 (737)
Q Consensus 417 ~~~~~~-------------------~~g~~~~~~------~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s 468 (737)
..+... ..|...... ...+||-..+....... ..+..|....|+ .+.+++
T Consensus 141 sv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk--~sne~v~~a~FHPtd~nliit 218 (626)
T KOG2106|consen 141 SVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK--TSNEVVFLATFHPTDPNLIIT 218 (626)
T ss_pred cccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce--eccceEEEEEeccCCCcEEEE
Confidence 332111 111111111 11455544333222111 346678888999 678888
Q ss_pred EeCCeEEEEECCCCcEEEE---ecCCC-CCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 469 ASGGKISIFSLETFQTLAT---FANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 469 ~sdg~i~vwd~~~~~~~~~---~~~~~-~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
++.|.+.+|+.+.+...+. +..++ ..|.|++|.++|.+++|..+|.|.||+..+.+..+....|.+.|.++....+
T Consensus 219 ~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 219 CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence 8899999999988766554 34333 5789999999999999999999999999888877777799999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceee------ceeeeec----------------------------ccCCCCCCCCeEEE
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLC------SKFLHSF----------------------------QTGLVPETTIVNHI 590 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~------~~~~~~~----------------------------~~~~~~~~~~v~~l 590 (737)
|.++ +|+.|+.|..||-.-.+... .-+++++ ..+|. .....+
T Consensus 299 Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~---delwgl 374 (626)
T KOG2106|consen 299 GTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG---DELWGL 374 (626)
T ss_pred ccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc---cceeeE
Confidence 9655 59999999999832110000 0001111 12333 577788
Q ss_pred EEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccc
Q 004683 591 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 669 (737)
Q Consensus 591 ~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 669 (737)
+.+|+...+++ +.|+.+++|+ ..+++.+... ..++.++.|+|.| .++.|+..|...|.|.++...+..-.
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--- 445 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--- 445 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe---
Confidence 99999988888 5999999999 4555544433 6778999999999 99999999999999999966554432
Q ss_pred ccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 670 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 670 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
+ ...+.+|+|+| +|.+||.|+.|+.|+||.+.....++....
T Consensus 446 -------d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 446 -------D-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred -------c-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 1 23344999999 899999999999999999998877765543
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=202.03 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=187.5
Q ss_pred cCCC-CCEEEEEecCCeEEEeecCccCC----CCcee-eeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccC
Q 004683 347 SLPD-ADSAVCAKSLEKSVNLKLQLINE----PSECR-TLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQS 419 (737)
Q Consensus 347 ~spd-g~~la~~s~dg~v~iW~~~~~~~----~~~~~-~~~l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~ 419 (737)
..|. ...+|+++..+.|.|||...... .+.|. .++|.| |..+=.+++|++.. -+|++++.|++|.+||+..
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g--H~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG--HEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe--ecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 4444 56677888899999999875311 11111 224666 88878889999853 3689999999999999885
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECC--CCcEEEEecCCCC
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQTLATFANPPP 493 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~--~~~~~~~~~~~~~ 493 (737)
... ++..........+|.+.|..++|+ ...|++++ |+.+.|||++ +.+......+|.+
T Consensus 210 ~~~----------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 210 ESK----------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred ccc----------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 432 111111111112799999999999 77888888 8999999999 5566677789999
Q ss_pred CeEEEEEcCCC--eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceee
Q 004683 494 IATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC 569 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~ 569 (737)
.|.|++|+|-+ .||+||.|++|.+||+++- +++.++.+|...|.++.|+|.. ..+++++.|+.+.+||+..-....
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999988 8999999999999999874 5688999999999999999954 678899999999999997522111
Q ss_pred ---------ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCC
Q 004683 570 ---------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 613 (737)
Q Consensus 570 ---------~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~ 613 (737)
...+. +-.||. ..|..+.|+|+..+++++ .|+.+.||...
T Consensus 354 ~~eda~dgppEllF-~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLF-IHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeE-EecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 01111 345666 899999999999988874 88999999985
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=187.31 Aligned_cols=283 Identities=16% Similarity=0.152 Sum_probs=209.2
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEE
Q 004683 391 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 468 (737)
Q Consensus 391 V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s 468 (737)
..|+.||+.|.+||+|+.||.|.|||+.+-.. +.++ ++|..+|++++|| |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~l-----saH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARML-----SAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhhh-----hccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999874211 1111 2799999999999 999999
Q ss_pred Ee-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcC-----CCcceEEEE
Q 004683 469 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLA 540 (737)
Q Consensus 469 ~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~-----~~~~v~~l~ 540 (737)
++ |..|.+||+..|.+++.+.- ..+|+.+.|+|-. ..++.-.+..-.+.++..+... .+.. ......+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccccccc
Confidence 99 99999999999998888753 5689999999977 5555555555566665543211 1111 111223446
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC----
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL---- 615 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~---- 615 (737)
|.+.|+++++|...|.+.++|..+.++.....+.+ . ..|.++.++..|++++. +.|..|+.|+++.-
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 89999999999999999999999965554433331 1 47899999999999999 79999999998621
Q ss_pred ---ce--eEEecCCCCCCCeEEEEEccCCCEEEEEecC-CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 616 ---NH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 616 ---~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
++ .+.++.--....-.+++||.+|.|+++|+.. ..+|||....|.++..+.+. .+. -...+.|+|
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-------kgE--~l~DV~whp 303 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-------KGE--ELLDVNWHP 303 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-------chh--heeeccccc
Confidence 11 1111100013345678999999999988754 67999999999999998642 222 234899999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 690 LEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
-...+++- ..|.|+||.....+ .|..
T Consensus 304 -~rp~i~si-~sg~v~iw~~~~~e-nwsa 329 (405)
T KOG1273|consen 304 -VRPIIASI-ASGVVYIWAVVQVE-NWSA 329 (405)
T ss_pred -ceeeeeec-cCCceEEEEeeccc-chhh
Confidence 56677777 78999999987654 6765
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.4e-22 Score=198.09 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=186.5
Q ss_pred CEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 401 DFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 401 ~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
.|++++.. -..+.+|.+..... ..+.. --.++|.+++-+ |.+++.|+ .|.+++
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~--------------------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYl 107 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQ--------------------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYL 107 (476)
T ss_pred hheeeecccCccccccccCchhh--------------------hhhhc---ccccceeeeecCCCceEEEeecccCcEEE
Confidence 57777765 34677787653221 00111 145789999888 88888887 899999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC---------CCcEEEEEcCCCcceEEEEEeCC--
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLS-- 544 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~---------~~~~~~~l~~~~~~v~~l~~sp~-- 544 (737)
|.+.+|..+..+.+|-..|+|+.|+.|| +|++|+.||.|.+|++. +-++.+.|..|+-+|+++...+.
T Consensus 108 WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 108 WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 9999999999999999999999999999 99999999999999864 23567889999999999988765
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC--------
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-------- 615 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~-------- 615 (737)
..+++++|.|.++++||+..+..... +... ..+.+++.+|.++.+++| .+|.|.+.++...
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlt-----i~fp-----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLT-----ITFP-----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEE-----EecC-----CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 35799999999999999999654333 2222 689999999999999985 8999998886432
Q ss_pred --------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 616 --------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 616 --------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
..+..+.++.....|+|++++.||..|++|+.||.|.|||+.+.++++++.
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 233445443223499999999999999999999999999999998887765
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.7e-23 Score=219.92 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=201.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
.|...|.++..- ++.+++|+ |..+-+|.+.....+..+.+|..+|.|+.|+++. .|++|+.+|+|++||++.++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 488888888765 88899999 8889999998887888899999999999999999 9999999999999999999999
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 605 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg 605 (737)
+++.+|...+.++.|+|-+.+.++|+.|+.+++||.+. ..+.+ ...+|. ..+..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 99999999999999999999999999999999999995 23444 345566 688999999999999995 779
Q ss_pred cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEE
Q 004683 606 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 685 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 685 (737)
.++|||+..|+....|.. |.+.+.++.|+|..-++++|+.|++|++||+++-+.+....+. ... +.+.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~--v~~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDG--VRSL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCC--ceee
Confidence 999999999999999975 6899999999999999999999999999999998887776432 223 4499
Q ss_pred EEccCCCCEEEEEECC
Q 004683 686 AAHPLEPNRIALGLTN 701 (737)
Q Consensus 686 ~~sp~d~~~las~s~D 701 (737)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 88888887655
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.7e-21 Score=182.24 Aligned_cols=279 Identities=14% Similarity=0.147 Sum_probs=204.6
Q ss_pred CCCCEEEEEecCCeEEEeecCccCC--------CCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccC
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINE--------PSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS 419 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~--------~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~ 419 (737)
-.|+++++|+.||.+.+||++.... ...|..-.--..+|.-.|..+.|-| |.-.+.++|.|.+++|||..+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 4689999999999999999986421 0112111001145889999999998 555778888999999999875
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCeEEEEECCCCcEEEEecCCCC
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPPP 493 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~ 493 (737)
.+. ..+. ...+.|.+-+++ --++|+|. +-.|++.|+.+|....++.+|.+
T Consensus 134 lQ~------------a~~F------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 134 LQE------------AVDF------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred cee------------eEEe------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 432 1111 144556666666 23456666 68999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEECCCeEEEEecCCC-cEEEEE--------------cCCCcceEEEEEeCCCCEEEEEeCCCc
Q 004683 494 IATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKL--------------KGHQNRITCLAYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~-~~~~~l--------------~~~~~~v~~l~~sp~g~~l~s~s~dg~ 556 (737)
.|.++.|+|.. .|++|+.||.|++||++.. .+...+ ..|.+.|+.++|+.+|.++++++.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 99999999998 8899999999999999753 232222 247788999999999999999999999
Q ss_pred EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-EEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEE
Q 004683 557 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 635 (737)
Q Consensus 557 I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 635 (737)
+++|+...|+........ ..|......-..+. +-+...++ .-.++.+.++++-++..+..+.. |...|.+.++
T Consensus 270 ~r~wn~~~G~ntl~~~g~---~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~~~ 343 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGP---IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCAAY 343 (397)
T ss_pred eEEeecccCccccccccc---ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEEee
Confidence 999999886432111111 11110001111122 23333333 34779999999999999988876 5788999999
Q ss_pred ccCCCEEEEEecCCeEEEEEcC
Q 004683 636 SCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 636 sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
-|+-+...+|..|+.|+.|-..
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cCchhhhhccccCCcccccccc
Confidence 9999999999999999999873
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-21 Score=182.71 Aligned_cols=278 Identities=11% Similarity=0.042 Sum_probs=206.4
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...|++-|.++|+|..||.|.|||+.+ ...-+. +.+ |..+|.+++||+||+.|+|+|.|..|.+||+..+
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar~-lsa--H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--- 97 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDT----FRIARM-LSA--HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--- 97 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccc----cchhhh-hhc--cccceeEEEecCCCCEeeeecCCceeEEEeccCC---
Confidence 344999999999999999999999985 222222 555 9999999999999999999999999999987743
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEec-CC----CCC
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NP----PPI 494 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~----~~~ 494 (737)
.+++.. ...++|+.+.|+ .+.++++- +..-.+-++..++. ..+. .. +..
T Consensus 98 ------------------s~l~ri---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 98 ------------------SPLKRI---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSS 155 (405)
T ss_pred ------------------CceeEE---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccc
Confidence 222222 267889999998 33444433 65555555544221 1111 11 112
Q ss_pred eEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC-cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------
Q 004683 495 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGW------- 565 (737)
Q Consensus 495 v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~-~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~------- 565 (737)
..+..|.+.| ++++|...|.+.++|..+-+++..++-.. ..|..+.++..|+.++..+.|+.||.|+++.-
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 2344688889 99999999999999999999998887655 78999999999999999999999999998731
Q ss_pred ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEE
Q 004683 566 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 643 (737)
+......++.+... ..-.+++|+.+|.|++++ ....++||....|..++.+.+.. +.....+.|+|-...++
T Consensus 236 e~e~~~K~qDvVNk-----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNK-----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHPVRPIIA 309 (405)
T ss_pred CcChhHHHHHHHhh-----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeecccccceeeee
Confidence 11111111211111 345689999999999984 56789999999999999987642 46678899999888888
Q ss_pred EEecCCeEEEEEcCCCe
Q 004683 644 VSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 644 sgs~dg~I~vwd~~~~~ 660 (737)
+- ..|.|++|.....+
T Consensus 310 si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 310 SI-ASGVVYIWAVVQVE 325 (405)
T ss_pred ec-cCCceEEEEeeccc
Confidence 77 67999999976543
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.1e-20 Score=178.53 Aligned_cols=277 Identities=12% Similarity=0.111 Sum_probs=195.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEec
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~ 520 (737)
+|.+-|.++.|. |+.+|+|+ |++|+|||... ..+...++.|++.|..+.|.+- | .+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 699999999999 99999999 99999999643 3566778899999999999654 3 8999999999999974
Q ss_pred CC---------CcEEEEEcCCCcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeceeee-ec------ccCCCC
Q 004683 521 CT---------KKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SF------QTGLVP 582 (737)
Q Consensus 521 ~~---------~~~~~~l~~~~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~-~~------~~~~~~ 582 (737)
.. -....++....+.|+.+.|.| -|-.+++++.||.+|||+.-.-.....-.++ .+ +..+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~- 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK- 169 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc-
Confidence 21 112345666778999999999 4678999999999999986542111111111 11 11122
Q ss_pred CCCCeEEEEEecCC---CEEEEEecC------cEEEEeCCCC--ceeEEecCCCCCCCeEEEEEccCC----CEEEEEec
Q 004683 583 ETTIVNHIQFHPDQ---IHLLSIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCK 647 (737)
Q Consensus 583 ~~~~v~~l~~sp~g---~~l~~~~dg------~I~iwd~~~~--~~~~~~~~~~h~~~v~~~~~sp~~----~~l~sgs~ 647 (737)
.+..|+.|+|.. .+|++|.+. .+.||....+ +....-...+|..+|+.++|.|+- ..||+++.
T Consensus 170 --~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 --QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred --CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 577899999863 567777555 8899987543 222222223589999999999953 57899999
Q ss_pred CCeEEEEEcCCCe------------eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 648 SGHVKVFDTSTLE------------LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 648 dg~I~vwd~~~~~------------~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
|| |+||++.... ....+..+.....+.|++.++ .+.|+- -|.+|++.|+||.||+|...-....
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhhhhhhh
Confidence 99 9999987421 122222222222233466788 999999 6899999999999999998654311
Q ss_pred -----eeecCCCCCCCccCCCCCC
Q 004683 716 -----WGKLPFTDSREFSTTFGST 734 (737)
Q Consensus 716 -----w~~~~~~~~g~~s~~~~~~ 734 (737)
....+...++..+.+++++
T Consensus 324 kC~sv~~~e~~~~~~~~~~a~~t~ 347 (361)
T KOG2445|consen 324 KCTSVLKAEGSVTKPDFSQALTTP 347 (361)
T ss_pred eeeeEEeccCCCCCcccccccCCc
Confidence 1223344455555555444
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.2e-21 Score=190.81 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=216.3
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEeeccCCcc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.+.|.|....+.+++.|++++||.+++...+ ..+.+.| ...+|.++.|.|+|. .++++|.......||+.+.+.
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3447888899999999999999999865322 3333334 368999999999999 899999988998888875433
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCC-CCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~-~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
.+.-...++. ..+.....+ +++|+..+ .|.|.+....+++.+.+++- .+.|..+
T Consensus 293 ---------------------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~ 350 (514)
T KOG2055|consen 293 ---------------------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDF 350 (514)
T ss_pred ---------------------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeE
Confidence 1111111232 344556666 88999988 89999999999998888753 4578999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcce--EEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eeceeee
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLH 574 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v--~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~-~~~~~~~ 574 (737)
+|+.++ .|++++.+|.|++||+++..+++.+.. .+.| ++++.+++|.++|+||..|.|.|||.++... ...+++.
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 999999 888888899999999999999998874 3344 4567779999999999999999999765211 1123343
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE-E--ecCcEEEEeCCCCceeEEecCCC-CCCCeEEEEEccCCCEEEEEecCCe
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~-~--~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
++..-. ..|+++.|+|++..|+. + .+..+++-.+.+......+.... .-+.|+|++|||.|.++|.|..+|.
T Consensus 430 ~~dNLt----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 430 TVDNLT----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhhhhh----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 333222 57999999999999986 3 66889999998877666654321 2467999999999999999999999
Q ss_pred EEEEEcC
Q 004683 651 VKVFDTS 657 (737)
Q Consensus 651 I~vwd~~ 657 (737)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999874
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.8e-22 Score=209.07 Aligned_cols=281 Identities=14% Similarity=0.196 Sum_probs=211.5
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCC-CCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~-~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..++-..++.++. ..+.++.+........|... ..+ .--.-.+..|.|+. +.++||+++..|.|.+||+.....
T Consensus 47 ~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-- 122 (839)
T KOG0269|consen 47 VNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-- 122 (839)
T ss_pred ecCCcceeEEecc-cceeeEeeCcccCCcceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc--
Confidence 4566666666653 45677776643323333322 111 00123456677874 567999999999999999874100
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
...+. ....|...++++.|+ .++|++|+ ||+|++||+...+...++.+....|..+.|
T Consensus 123 ----------------nk~l~--~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 123 ----------------NKLLT--VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred ----------------chhhh--HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 00111 111699999999999 88999999 999999999999999999998999999999
Q ss_pred cCCC--eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 501 LPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 501 s~~~--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
+|.. .|+++...|.+++||++.- ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+......++
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--- 261 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--- 261 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---
Confidence 9976 9999999999999999864 566778899999999999999999999999999999999975543333333
Q ss_pred cCCCCCCCCeEEEEEecCCCEEE-EE---ecCcEEEEeCCCCc-eeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeE
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLL-SI---HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHV 651 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~-~~---~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I 651 (737)
.. .+|..+.|-|...+.+ +| .|-.|+|||++..- +..++. .|...++.++|.. |...+.+++.||+|
T Consensus 262 Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 262 TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHH
Confidence 22 6899999999986554 43 67899999997543 344553 3789999999964 56778899999998
Q ss_pred EEEEcCCC
Q 004683 652 KVFDTSTL 659 (737)
Q Consensus 652 ~vwd~~~~ 659 (737)
..-.++++
T Consensus 335 ~qh~~kna 342 (839)
T KOG0269|consen 335 LQHLFKNA 342 (839)
T ss_pred HHhhhhcc
Confidence 77666554
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.5e-22 Score=208.43 Aligned_cols=286 Identities=13% Similarity=0.102 Sum_probs=215.1
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH 465 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~ 465 (737)
....+++..++-..++.++. ..++++.+..... ....++...... .-...+..|.|. .++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~-------~~~~~~~~k~kq---------n~~~S~~DVkW~~~~~Nl 102 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDF-------SEKCNHRFKTKQ---------NKFYSAADVKWGQLYSNL 102 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccC-------Ccceeeeccccc---------ceeeehhhcccccchhhh
Confidence 45677888888888888876 4677777654322 000111110000 111234567787 889
Q ss_pred EEEEe-CCeEEEEECCC---CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 466 LFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
||+++ .|.|.+||+.. .+.+..|..|...+.++.|++.. .|++|+.||+|++||++..+...++.+....|..+
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999 89999999987 56667888999999999999988 99999999999999999999999999989999999
Q ss_pred EEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCce
Q 004683 540 AYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 617 (737)
Q Consensus 540 ~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~ 617 (737)
.|+| .+..++++...|.+.+||++... ++.. ....|. ++|.++.|+|++.+||+ |.|+.|+|||..+.+.
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 9999 67889999999999999999732 3333 345566 89999999999999999 5999999999976543
Q ss_pred --eEEecCCCCCCCeEEEEEccCCCE-EEEEe--cCCeEEEEEcCCCe-eEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 618 --TSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 618 --~~~~~~~~h~~~v~~~~~sp~~~~-l~sgs--~dg~I~vwd~~~~~-~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
..++. ...+|.++.|-|...+ |++++ .|-.|+|||+...- +...+..| ... ++.++|-..|
T Consensus 255 ~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--------~~~--vt~i~W~~~d 321 (839)
T KOG0269|consen 255 KPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--------TDS--VTGIAWDSGD 321 (839)
T ss_pred cceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--------Ccc--ccceeccCCC
Confidence 33443 2678999999997665 45443 47899999998543 23333322 222 4489998777
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 004683 692 PNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~ 712 (737)
...+.+++.||+|..-.+.++
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 889999999999876665544
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8.1e-21 Score=195.75 Aligned_cols=281 Identities=14% Similarity=0.178 Sum_probs=205.1
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |++.|.+++..|.|.+|++|+.||+|+||.+.++.+ +.+.. ..+.|.|++|
T Consensus 396 yrG--Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------vr~~~---~d~~I~~vaw 449 (733)
T KOG0650|consen 396 YRG--HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------VRTVQ---FDSEIRSVAW 449 (733)
T ss_pred Eec--cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------EEEEe---ecceeEEEEe
Confidence 556 999999999999999999999999999998775443 32222 3456667777
Q ss_pred e--CC--EEEEEeCCeEE---------------------------------EEECCCC----cEEEEecCCCCCeEEEEE
Q 004683 462 R--GS--HLFSASGGKIS---------------------------------IFSLETF----QTLATFANPPPIATYFIL 500 (737)
Q Consensus 462 s--~~--~l~s~sdg~i~---------------------------------vwd~~~~----~~~~~~~~~~~~v~~~~~ 500 (737)
+ ++ .||++-++.+. .|.-... .-++..-.|...|..+.|
T Consensus 450 ~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 450 NPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred cCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 6 21 23333333333 3332210 012233467788999999
Q ss_pred cCCC-eEEEEECCC---eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 501 LPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 501 s~~~-~l~sgs~dg---~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
+..| +|++...++ .|.|+++..+....-|+...+.|.++.|+|...++++++ ...|++||+...+ .+..+
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-----lvKkL 603 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-----LVKKL 603 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----HHHHH
Confidence 9999 988876644 789999987777777766778899999999998888877 5689999998732 23333
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
..+. ..|.+++++|.|..|++ +.|+.+..||+.-+ ++.+++.. |...+++++|++.-.++++|+.||++.|+
T Consensus 604 ~tg~----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 604 LTGS----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hcCC----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 3343 58999999999987777 59999999999754 45555543 78999999999999999999999999998
Q ss_pred EcCC------C---eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE
Q 004683 655 DTST------L---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 707 (737)
Q Consensus 655 d~~~------~---~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW 707 (737)
.-.- . -++..+.+|.. ....-++.+.||| ...+|.+++.||+|++|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~------~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEK------TNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCcee------ecccceEeecccC-CCceEEecCCCceEEee
Confidence 6331 1 12334443311 1123366889999 57899999999999998
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=4e-21 Score=193.67 Aligned_cols=288 Identities=16% Similarity=0.166 Sum_probs=213.6
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE--CCCcEEEeeccCCcccccccceee
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s--~dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
+..++...++++||+........+...+ ....+.++.|+.... |++++ .|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~----------- 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK----------- 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccce-EEEeecCCceeEEEecccCC-----------
Confidence 3445555679999998643222322221 233589999988764 45444 4778888864321
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 507 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~ 507 (737)
++++...... ..+.-.|++.. ..++++|+ .++|+|||+....+.+.+.+|...|+++.++..+ +||
T Consensus 68 --------~~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 68 --------TPEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred --------CCccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 1111111111 11123344433 67889999 8999999999777788889999999999999999 999
Q ss_pred EEECCCeEEEEecCCCcEEEEEcCC-CcceEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCC
Q 004683 508 FGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~~~~l~~~-~~~v~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
+++..|.|.+..+.++.....|... ...|.-+.|+|..+. |.+++.+|.|.+||+.. ..++..+...|. .
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-----~sp~~~~~~~Hs---A 209 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-----MSPIFHASEAHS---A 209 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC-----CCcccchhhhcc---C
Confidence 9999999999999999887777643 345668899997765 66789999999999998 345555667777 7
Q ss_pred CeEEEEEecCCCEEEE--EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC-CeeE
Q 004683 586 IVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELR 662 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~-~~~~ 662 (737)
+...|+|+|....|++ |.|..|.+||.+..+....+.. ..+...++|+++|.+|++|+..|.|+.||++. ..++
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 8899999998866665 6999999999998777766643 67899999999999999999999999999985 4566
Q ss_pred EEEecccccCCCCccCceeeEEEEEcc
Q 004683 663 CQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 663 ~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
.++..| +.. |++++|-|
T Consensus 287 ~v~sah--------~~s--Vt~vafq~ 303 (673)
T KOG4378|consen 287 AVRSAH--------DAS--VTRVAFQP 303 (673)
T ss_pred eEeeec--------ccc--eeEEEeee
Confidence 666544 333 45889888
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1e-20 Score=182.24 Aligned_cols=291 Identities=14% Similarity=0.129 Sum_probs=208.8
Q ss_pred CCCCeEEEEEec----CC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 387 FGGRVVRLIYSH----SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 387 h~~~V~~v~fsp----dg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|+.+|..++|++ +. ..++++| .+.+.+|+.... | .+ ..++......|......++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d----~------~i--------r~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGD----G------GI--------RLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCc----c------ce--------eeeeeccCCCCCcceEEEEE
Confidence 889999999985 22 3445554 467888876531 1 00 12222333357888889999
Q ss_pred e------CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc--
Q 004683 462 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-- 530 (737)
Q Consensus 462 s------~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~-- 530 (737)
+ +-++|+|+ -|.|+|.|+.++++...+.+|...|+.+.++|+. ++++||.|..|++|++++..++..+.
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 8 23677777 7999999999999999999999999999999999 89999999999999999999998874
Q ss_pred -CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee-------------ceeeee----c-----ccCCCCCCCCe
Q 004683 531 -GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------------SKFLHS----F-----QTGLVPETTIV 587 (737)
Q Consensus 531 -~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~-------------~~~~~~----~-----~~~~~~~~~~v 587 (737)
+|...|.++.|+++|.++++++.|.++++|++...+... ..++.+ + ..-|. ..|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV 254 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence 599999999999999999999999999999998422110 000000 0 01111 344
Q ss_pred EEEEEecCCCEEEE-EecCcEEEEeC-CCCce-------------eEEecCCCCCCCeEEE--EEccCCCEEEEEecCCe
Q 004683 588 NHIQFHPDQIHLLS-IHEGQIDVYEA-PTLNH-------------TSQLVPDKMDLPITYA--TYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 588 ~~l~~sp~g~~l~~-~~dg~I~iwd~-~~~~~-------------~~~~~~~~h~~~v~~~--~~sp~~~~l~sgs~dg~ 650 (737)
-|+.|- |.++++ +.++.|..|.. +-++. +.++.. ....|+-+ +|.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 444443 577888 78889999987 22222 122221 13345544 45577899999999999
Q ss_pred EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 651 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
|++||++..++...-... |+.....+...+|+. |+.+|+...+|++|.=||..
T Consensus 331 v~vwdL~~~ep~~~ttl~------~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLT------HSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCceEE------eccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999987663211111 112223344899998 89999999999999999864
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-20 Score=178.76 Aligned_cols=247 Identities=11% Similarity=0.183 Sum_probs=182.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---- 462 (737)
|.+-|.++.|.+-|+++|+|+.|++++|||..... |. |..... . . .|.+.|..+.|.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~---------W~~Ts~-W----r--ah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GT---------WSCTSS-W----R--AHDGSIWRVVWAHPEF 72 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCC---Cc---------eEEeee-E----E--ecCCcEEEEEecCccc
Confidence 89999999999999999999999999999965321 11 221111 1 1 599999999998
Q ss_pred CCEEEEEe-CCeEEEEECC---------CCcEEEEecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCCC------
Q 004683 463 GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK------ 523 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~------ 523 (737)
|+.+|+++ |+++.||.-. ......++......|+.+.|.|.. ++|+++.||.++||+.-.-
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 99999999 9999999752 112344556667789999999975 9999999999999986432
Q ss_pred cEEEEEc-------CCCcceEEEEEeCC---CCEEEEEeCC-----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 524 KTKAKLK-------GHQNRITCLAYSLS---LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 524 ~~~~~l~-------~~~~~v~~l~~sp~---g~~l~s~s~d-----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
.....++ .+..+..|+.|+|. ..+|++|+.+ +.+.||....+... ...+.+++ +|. .+|+
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w~kva~L~-d~~---dpI~ 227 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-WLKVAELP-DHT---DPIR 227 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-eeeehhcC-CCC---Ccce
Confidence 2222333 35667889999973 3568888765 47888876653211 22333344 666 7999
Q ss_pred EEEEecCC----CEEEE-EecCcEEEEeCCCCc-----------------eeEEec-CCCCCCCeEEEEEccCCCEEEEE
Q 004683 589 HIQFHPDQ----IHLLS-IHEGQIDVYEAPTLN-----------------HTSQLV-PDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 589 ~l~~sp~g----~~l~~-~~dg~I~iwd~~~~~-----------------~~~~~~-~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
.++|.|+- ..||+ +.|| |+||.+.... .+..+. ..+|.+.|+.+.|+-.|..|++.
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 99999973 34566 5888 9999986311 111111 23589999999999999999999
Q ss_pred ecCCeEEEEEcCC
Q 004683 646 CKSGHVKVFDTST 658 (737)
Q Consensus 646 s~dg~I~vwd~~~ 658 (737)
|.||.|++|...-
T Consensus 307 GdDG~VRLWkany 319 (361)
T KOG2445|consen 307 GDDGCVRLWKANY 319 (361)
T ss_pred CCCceeeehhhhh
Confidence 9999999998654
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=188.04 Aligned_cols=292 Identities=17% Similarity=0.224 Sum_probs=210.9
Q ss_pred CCCCeEEEEEecCC--CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 387 FGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg--~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
|..+|.+++|+|.. +.+|+|..-|+|-+||+.+... + .++..+ ...|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d--------------~d~v~~----f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-D--------------KDGVYL----FTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-c--------------cCceEE----eccCCccccceEecCC
Confidence 68899999999965 4788888899999999863221 0 111111 11699999999999
Q ss_pred -CCEEEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE-EEEEcCCCcce
Q 004683 463 -GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 536 (737)
Q Consensus 463 -~~~l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v 536 (737)
...+++.+ ||+|+.-|++++..-..+. .....+..+.|+.+. .++.|..=|...+||.+++.. ...+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45677777 9999999998764333332 344567788888888 888888778999999998665 56677788899
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCC-
Q 004683 537 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 613 (737)
Q Consensus 537 ~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~- 613 (737)
.+++++|.. .+++++|.|++.+|||++.-.......+.+ -.|. ..|.+..|||.|-.|++ |.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst--~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST--LPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec--cccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999965 569999999999999999743322212332 2344 68999999999866777 799999999983
Q ss_pred ---CCceeEEecCCC-CCC--CeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 614 ---TLNHTSQLVPDK-MDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 614 ---~~~~~~~~~~~~-h~~--~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
...+..++.-.. +.. ......|.|+..++++|..-..|-|+|-+.++.+..+... ....|. .-..|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~-~vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIP-SVNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------cccccc-cceee
Confidence 333333432111 112 2345789999999999999999999999999988776422 111232 35689
Q ss_pred ccCCCCEEEEEECCCcEEEEecC
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
||.+..++|.++..|.|+||--.
T Consensus 473 HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeccCCccceEEEEecC
Confidence 99543356666677888888643
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.9e-20 Score=199.26 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=197.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC-cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 525 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~ 525 (737)
.|....+.++|. |.+|++++ ||.|++|+...- +.-.++..+...|.+++. ++ +|++|+.+++|.+|.+.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 588889999999 88999998 999999998665 333444446666776664 44 899999999999999998876
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Eec
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 604 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d 604 (737)
-..+...+-++++++|+-+|+++|.||.|-.|++-++.+... .. ...+|. .+|.++.|+|.+++||+ +.|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----~~-~lrgh~---apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----EK-VLRGHD---APVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-----he-eecccC---CceeeeeEcCCCCEEEEEecC
Confidence 656666678999999999999999999999999999887321 11 355777 89999999999999999 599
Q ss_pred CcEEEEeCCCCceeEEecCCC------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccC
Q 004683 605 GQIDVYEAPTLNHTSQLVPDK------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 678 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~ 678 (737)
|.|++||+.++.+..++.+-. ....+..++|+|+|..++..+.|+.|.+|+..+++....+... +...
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------~~ss 233 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------LSSS 233 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------cccc
Confidence 999999999988776654321 1445678999999888888889999999999999998888643 1122
Q ss_pred ceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 679 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 679 ~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
. ..+++|+| +|.|||+++.||.|-|||+.+
T Consensus 234 ~--~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 K--FSDLQWSP-NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c--eEEEEEcC-CCcEEeeeccCCcEEEEeccc
Confidence 2 45999999 799999999999999999994
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.5e-22 Score=209.19 Aligned_cols=250 Identities=18% Similarity=0.188 Sum_probs=208.6
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeee
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 432 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~ 432 (737)
.++.+..+-.+++|+... +.. |...|.|+..-..++.+++|+.|..+-+|.....
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-----------~~~--hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp------------ 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-----------FVA--HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP------------ 60 (825)
T ss_pred ccceeeeeeccccccchh-----------hhh--hhhhhceeeeeccceeeccCCCceeeccccccCC------------
Confidence 344555556677888653 222 7888999998888899999999999988876521
Q ss_pred eEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEE
Q 004683 433 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 508 (737)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~s 508 (737)
|...+ ..+|..+|.++.|+ ..+|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+ +++.
T Consensus 61 ---~~i~S--------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~ 129 (825)
T KOG0267|consen 61 ---NAITS--------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS 129 (825)
T ss_pred ---chhhe--------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc
Confidence 22111 12799999999999 66677777 8999999999999999999999999999999999 9999
Q ss_pred EECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 509 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 509 gs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
|+.|+.+++||++...|.+.+.+|...+.++.|+|+|+++++++.|.++++||+..++. +. -+..|. ..+.
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-----~~-ef~~~e---~~v~ 200 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-----SK-EFKSHE---GKVQ 200 (825)
T ss_pred ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-----cc-cccccc---cccc
Confidence 99999999999998889999999999999999999999999999999999999988543 22 234455 7899
Q ss_pred EEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 589 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 589 ~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
++.|+|..-.++. |.|+++++||+++.+.+....+ ....|.+..|+|++..+++|..+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeeecCchhh
Confidence 9999998877777 5999999999999888877755 377899999999999999887654
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=4.5e-20 Score=177.26 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=195.7
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEeeccCCccccc---ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----
Q 004683 391 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 462 (737)
Q Consensus 391 V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g---~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----- 462 (737)
...+.|||||..|++-+.|+.+.+|++.......+ ....+.. ..+. . .....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~---------~~~r-~---~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKH---------LSYR-Y---QEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccc---------eeEE-e---ccCCEEEEEEeeecccc
Confidence 45689999999999999999999999876443111 1110000 0000 0 123445555553
Q ss_pred ----CCEEEEEe-CCeEEEEECCCCcEEEEecC--CCC---CeEEEEEcCCC-eEEEEECCCeEEEEec-CCCcEEE---
Q 004683 463 ----GSHLFSAS-GGKISIFSLETFQTLATFAN--PPP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKA--- 527 (737)
Q Consensus 463 ----~~~l~s~s-dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~s~~~-~l~sgs~dg~I~vwd~-~~~~~~~--- 527 (737)
..++++.+ +.-|++||.-+|+....+.+ |.. ...+++|+||| +|++|. ..+|+++|+ +.|..-.
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh
Confidence 45677777 89999999999998888763 222 34689999999 887765 679999998 5554321
Q ss_pred EE----cCCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE
Q 004683 528 KL----KGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 602 (737)
Q Consensus 528 ~l----~~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 602 (737)
++ .+..+-+.+++|+|. .+.+++|+....+-||.-.. ..++. +..+|. +.|+.++|.++|+.|.+|
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeeccc
Confidence 11 123677899999994 45899999999888887666 35566 555777 899999999999999985
Q ss_pred --ecCcEEEEeCCCC-ceeEEecCCCCCC-CeEEEE--EccCCCEEEEEecCCeEEEEEcCC-CeeEEEEecccccCCCC
Q 004683 603 --HEGQIDVYEAPTL-NHTSQLVPDKMDL-PITYAT--YSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGT 675 (737)
Q Consensus 603 --~dg~I~iwd~~~~-~~~~~~~~~~h~~-~v~~~~--~sp~~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~~~g~ 675 (737)
.+..|..||++.. .++..+.. |.. .-..|- ..|++++|++|+.||.|++||+++ |..+..+..+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~------- 339 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY------- 339 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-------
Confidence 7889999999863 45544433 222 223444 458999999999999999999998 6655555432
Q ss_pred ccCceeeEEEEEccCCCCEEEEEECC
Q 004683 676 ISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 676 ~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
+..++ .|+++| --.++|+++..
T Consensus 340 -sd~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 340 -SDTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred -ccccc--ceecCc-ccceeeeccCc
Confidence 44455 999999 46677777643
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1e-19 Score=187.66 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=219.3
Q ss_pred eeccCCCCCcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCC-
Q 004683 323 DASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD- 401 (737)
Q Consensus 323 ~~~~gh~~~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~- 401 (737)
..|.||.+.+.+ +...|.|.+||+|+.||+|+||.+. ++.|..... ..+.|.||+|+|.+.
T Consensus 394 lvyrGHtg~Vr~----------iSvdp~G~wlasGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 394 LVYRGHTGLVRS----------ISVDPSGEWLASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSVAWNPLSDL 455 (733)
T ss_pred eeEeccCCeEEE----------EEecCCcceeeecCCCCcEEEEEee----cceEEEEEe----ecceeEEEEecCCCCc
Confidence 345677773332 2366899999999999999999999 578876532 357899999999765
Q ss_pred EEEEEECCCcEEEeeccCCcc----ccccccee--------eeeEEeecCCCe----eeeeccCCCCCCCeEEEEEe--C
Q 004683 402 FLVALTQTATHKLWKWQSNKQ----SLEEENVN--------MESQLYQPSSKL----VMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 402 ~L~s~s~dg~i~iWd~~~~~~----~~g~~~~~--------~~~~l~~~~~~~----~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
.+++++..+++.|-+..-+.. ++.....+ ..+..|...... -+...+ .|...|..+.|+ |
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWHRKG 533 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeeecCC
Confidence 233334444466655443321 01111111 122457654211 011112 589999999999 9
Q ss_pred CEEEEEe-C---CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 464 SHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 464 ~~l~s~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
.||++.. + ..|.|.++.......-|....+.|.++.|+|.. ++++++ ...|++||+..+..++.+......|.+
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISS 612 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeee
Confidence 9999987 3 579999998777666676667789999999999 888777 468999999887777777666778999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCC----
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---- 613 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~---- 613 (737)
++.+|.|..++.|+.|+.+..+|+.-. .++.+ ....|. ..+++++|++.-..++++ .||++.||.-.
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldls----skPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLS----SKPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccC----cchhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 999999999999999999999999863 34555 334555 789999999999999986 66999988632
Q ss_pred ---CC--ceeEEecCCCC--CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 614 ---TL--NHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 614 ---~~--~~~~~~~~~~h--~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
+. -++..+.++.. ...|..+.|+|...||++++.||+|++|
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 13444544211 3458899999999999999999999998
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1e-19 Score=182.00 Aligned_cols=232 Identities=13% Similarity=0.136 Sum_probs=178.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCcE---E------------------EEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQT---L------------------ATFANPPPIATYFILLPQD--LFAFGFDDSSILVH 518 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~---~------------------~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vw 518 (737)
|+++|.|. +..|.|||+.--.. . ....+|...|..++|+..- .||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999 99999999852110 0 0123688888888888776 89999999999999
Q ss_pred ecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 519 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 519 d~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
|+.+|++..++..|...|.++.|+| ....+++|+.|++|.+.|.+.... .....+ .. +.|-.++|.|...
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk---~~-----g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK---FD-----GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE---ec-----cceEEEEecCCCc
Confidence 9999999999999999999999999 567899999999999999995111 111111 11 6799999999875
Q ss_pred EEE-E-EecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCC
Q 004683 598 HLL-S-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 598 ~l~-~-~~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
..+ + ..||.|+-+|+++. +++.+++. |..+|.++++++. -.++++++.|+.|++|++.......... +.+.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~-- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFK-- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-cccc--
Confidence 443 3 48899999999974 88888865 7899999999974 4678899999999999987654432211 1000
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
-+. ..|+++.|.....+|.||..+.++|||+.+..
T Consensus 418 ---~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 418 ---LGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---ccc--eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 111 23788888666789999999999999998764
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=181.47 Aligned_cols=295 Identities=10% Similarity=0.083 Sum_probs=200.0
Q ss_pred cCCCCCEEEEEecCCe-----EEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-------CCCEEEEEECCCcEEE
Q 004683 347 SLPDADSAVCAKSLEK-----SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHKL 414 (737)
Q Consensus 347 ~spdg~~la~~s~dg~-----v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-------dg~~L~s~s~dg~i~i 414 (737)
.-|+...++++..+.. |++|+-.. +....+.-+- -...-.|++|.. .|+|+|.|+.|..|.|
T Consensus 133 V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~i---lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 133 VKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFI---LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred eccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEeccee---ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 4576677777754433 34454332 1211110000 023345677743 3679999999999999
Q ss_pred eeccCCcc--cc---cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEE
Q 004683 415 WKWQSNKQ--SL---EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL 485 (737)
Q Consensus 415 Wd~~~~~~--~~---g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~ 485 (737)
||+.-... |. |...... ....++ +.....+|++.|.+++|+ .+.||+|+ |.+|++||+.+|++.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~-----~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~ 279 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKK-----KKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK 279 (463)
T ss_pred eccccccccccceeechhhhhh-----hhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc
Confidence 99863222 00 1000000 000000 111123799999999999 77899999 999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcE-EEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEe
Q 004683 486 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWD 561 (737)
Q Consensus 486 ~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwd 561 (737)
.++..|...|.++.|+|.. .+++|+.|++|.+.|.+.-.. -..++ ..+.|-.++|.|.. ..+++++.||+|+-+|
T Consensus 280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999999999999999988 999999999999999984222 22333 45789999999955 4577888999999999
Q ss_pred CCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC
Q 004683 562 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
+|.. ..++.++ ..|. .+|.++++++.-..+++ +.|+.|.+|++....+..+....-.-+...|.++.|+-
T Consensus 359 ~R~~----~~~vwt~-~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 359 IRNP----GKPVWTL-KAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred cCCC----CCceeEE-Eecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 9984 2555533 3455 79999999998765554 59999999998754442222110012335566677755
Q ss_pred -CEEEEEecCCeEEEEEcCCCeeEE
Q 004683 640 -KCIYVSCKSGHVKVFDTSTLELRC 663 (737)
Q Consensus 640 -~~l~sgs~dg~I~vwd~~~~~~~~ 663 (737)
-+++.|+..+.++|||+.+...+.
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ceEEEecCccceEEEeecccChhHH
Confidence 456778888899999999876543
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=183.48 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=188.3
Q ss_pred CCeEEEEEe-CCEEEEEe---CCeEEEEECCC--CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 454 DSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 454 ~~V~~v~~s-~~~l~s~s---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
..+.++.|+ .+.|++++ |..+++|.-.. ++....-......-.|++..... ++++|+..+.|+|||++...+.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 348899999 66676665 67888886432 22211111112244567766677 9999999999999999987778
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--Eec
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE 604 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~~d 604 (737)
+.+++|++.|+++.++-...+|++++..|.|.+..+.++.. ..++. ...+ ..|.-+.++|..+++++ +.+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~-~~sg-----qsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFT-IDSG-----QSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--cccee-cCCC-----CeEEEeecccccceeeEeeccC
Confidence 88999999999999999999999999999999999988432 11111 2222 46779999999998886 588
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeE
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
|.|.+||+....++..+.. .|..+...+||+| +..++++.+.|..|++||..+.+....+.. +++..
T Consensus 187 G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls-- 254 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS-- 254 (673)
T ss_pred CeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc--
Confidence 9999999988888877754 4899999999999 567888999999999999998887777753 34444
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.++|++ +|.+|+.|+..|.|..||+...+
T Consensus 255 tvaf~~-~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 255 TVAFSE-CGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecC-CceEEEeecCCceEEEEecccCC
Confidence 899999 89999999999999999998643
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.4e-19 Score=186.44 Aligned_cols=281 Identities=13% Similarity=0.107 Sum_probs=196.8
Q ss_pred CCCEEEEEecCCeEEEeecCccCCC-CceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~-~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
....|+.+..||.|.++|....... .+++-..... |...|..+.|-|....|++++.|.++++||+.....
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a--H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l------ 134 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA--HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL------ 134 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhccccc--ccceeEeeccCCCceeEEEccCCceeeeeeecccee------
Confidence 3467899999999999998753211 2222222333 999999999999777899999999999999875443
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCc---------------------
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------------------- 483 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~--------------------- 483 (737)
......-||...|.+++|. ...|++|+ ||.|.|||+.-..
T Consensus 135 ---------------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 135 ---------------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ---------------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 1110111799999999999 56788999 9999999985221
Q ss_pred ------EEEEecCCCCCeEE---EEEcCCC-eEEEEEC-CCeEEEEecCCCcEEEE--------EcCC---CcceEEEEE
Q 004683 484 ------TLATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAY 541 (737)
Q Consensus 484 ------~~~~~~~~~~~v~~---~~~s~~~-~l~sgs~-dg~I~vwd~~~~~~~~~--------l~~~---~~~v~~l~~ 541 (737)
.++....+...|.+ +.+..|. .||+++. |+.|+|||++....... +..| ...+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 11122234444544 5556677 8888887 99999999987544322 1122 345778888
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEE
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~ 620 (737)
...|.++.+.+.|++|++|++.+-. ..++. ...++... ..-..-..+|++.+++++ .|...++|.+.+-+.-..
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s---~sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLS---ISPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccC---cCchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 8889999888889999999998732 12222 22232210 111123568999999994 999999999987654333
Q ss_pred ecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCC
Q 004683 621 LVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~ 659 (737)
... +|...|++++|.|. -.-++++++|..++||++..+
T Consensus 355 ~l~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 322 47899999999873 345677799999999999755
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=8.4e-19 Score=173.69 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=203.9
Q ss_pred EEEEEecCCeEEEeecCccCCCCc---ee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSE---CR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~---~~-~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
.+|+|+.|..|+||.+......+. .. .-.|.. |...|++|.|+|+|..||||+++|.|.+|.......
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~--H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~------ 99 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR--HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI------ 99 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccC--CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC------
Confidence 899999999999999876543331 11 112444 999999999999999999999999999998663111
Q ss_pred eeeeeEEeecCC------CeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 429 VNMESQLYQPSS------KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 429 ~~~~~~l~~~~~------~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
.+.++ ...+......+|...|..++|+ +.++++++ |..+++||+..|.....+..|...+..++
T Consensus 100 -------~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 100 -------FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred -------ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 11111 1111111222699999999999 88999999 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcEEEEEc--------C-----------C----CcceEEEEEeCCCCEEEEEeC--
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------H----QNRITCLAYSLSLNVLVSSGA-- 553 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~--------~-----------~----~~~v~~l~~sp~g~~l~s~s~-- 553 (737)
|.|-+ ++++-+.|...+.+.+...+.++... + | ......++|+|+|..+++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999 99999989877777665433222111 0 1 123456789999999887542
Q ss_pred --CCc-----EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec------------------CCCEEEEEecCcEE
Q 004683 554 --DAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------DQIHLLSIHEGQID 608 (737)
Q Consensus 554 --dg~-----I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp------------------~g~~l~~~~dg~I~ 608 (737)
.+. .++|+-.. ..++...++... .++..+.++| .+-.++++..+.|+
T Consensus 253 ~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKD----LKRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred eeCCceeeceeEeecccc----ccCceeecCCCC----cceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 222 23443321 112222222222 3444455544 22234457788999
Q ss_pred EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 609 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
+||.++-.++..... -|-..++.++|++||..|+..|.||...+-.++..++-
T Consensus 325 vydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 999999888877654 47899999999999999999999999988888876654
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=2.8e-19 Score=185.90 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=206.8
Q ss_pred CccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 341 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 341 ~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
|...+.|-|||..++.+. +..+.+||.+. +...+. +.| |.+.|.||+||.||+.+|||+.|..|.+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd----G~llqt-LKg--HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD----GTLLQP-LKG--HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC----cccccc-ccc--ccceEEEEEEccCCceeccCCCceeEEEecccc-
Confidence 344455889999998876 45789999985 444443 777 999999999999999999999999999997442
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
.|.+.. .|.+.|.|+.|+ ...+++|+=...-+|..+.....+ . ....++.++
T Consensus 85 -------------------EG~LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~C 138 (1081)
T KOG1538|consen 85 -------------------EGILKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICC 138 (1081)
T ss_pred -------------------cceeee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEe
Confidence 122222 599999999999 889999996667789876433221 1 223478899
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc---CCCcceEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCceee
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLC 569 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~---~~~~~v~~l~~sp~g-----~~l~s~s~dg~I~lwdl~~~~~~~ 569 (737)
+|..|| +++.|-.+|+|.+-+- +|+....+. |..++|++++|+|+. ..+++.....++.+|.+......+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 999999 9999999999999874 344433333 467899999999953 468888899999999888632222
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
.+.+. ....|+.+.|+|.+++. |.|+.+++|.- .|-.+.++- .....|+.++..|++++++.|+.|
T Consensus 218 ~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 218 DRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred cccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEEEEccCCceEEEEEcc
Confidence 22222 45678999999999998 59999999964 465555553 257899999999999999999999
Q ss_pred CeEEEEEcC
Q 004683 649 GHVKVFDTS 657 (737)
Q Consensus 649 g~I~vwd~~ 657 (737)
|+|-.|++.
T Consensus 285 GTiACyNl~ 293 (1081)
T KOG1538|consen 285 GTIACYNLI 293 (1081)
T ss_pred CeeehhhhH
Confidence 999999863
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=6.3e-19 Score=169.42 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=202.6
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCC---------ceeeeecCCCCCCCCeEEEEEe-------cCCCEEEEEECC
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPS---------ECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQT 409 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~---------~~~~~~l~~~~h~~~V~~v~fs-------pdg~~L~s~s~d 409 (737)
.|+|||..+.+-+.|+.+++|++....... ....+.++ ....|...+|- |+..++++.+.+
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeecccc
Confidence 499999999999999999999986321110 11111122 25678887775 678899999999
Q ss_pred CcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCC---CeEEEEEe--CCEEEEEeCCeEEEEEC-CCCc
Q 004683 410 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--GSHLFSASGGKISIFSL-ETFQ 483 (737)
Q Consensus 410 g~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~---~V~~v~~s--~~~l~s~sdg~i~vwd~-~~~~ 483 (737)
.-|++||.. +|+..+++ +.|| |.+ .-.+++|+ |.+|++|-...|+++|+ ..|.
T Consensus 133 ~PIh~wdaf-----tG~lraSy--~~yd--------------h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 133 QPIHLWDAF-----TGKLRASY--RAYD--------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred Cceeeeecc-----ccccccch--hhhh--------------hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 999999987 45555544 2333 333 34579999 89999998999999999 4443
Q ss_pred EEEEe-------cCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-
Q 004683 484 TLATF-------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA- 553 (737)
Q Consensus 484 ~~~~~-------~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~- 553 (737)
....+ .+..+.+.|++|+|-. .+++|+...++-+|.-..+.++..+.+|.+.|+.+.|.++|+.+.+|+.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 32222 1335678999999987 8999999999999998889999999999999999999999999999886
Q ss_pred CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCC-CceeEEecCCCCCCCeE
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~ 631 (737)
|..|-.||++.. ..++..+. .|...+..=.-....|+|++|++| .||.|++||++. +..+..+.. +...++
T Consensus 272 ~dkIl~WDiR~~----~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--~sd~vN 344 (406)
T KOG2919|consen 272 DDKILCWDIRYS----RDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--YSDTVN 344 (406)
T ss_pred CCeEEEEeehhc----cchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--cccccc
Confidence 678999999973 23333222 222111222234557899999996 999999999987 676666643 688999
Q ss_pred EEEEccCCCEEEEEec
Q 004683 632 YATYSCDGKCIYVSCK 647 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs~ 647 (737)
.++++|--.++++++.
T Consensus 345 gvslnP~mpilatssG 360 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSG 360 (406)
T ss_pred ceecCcccceeeeccC
Confidence 9999999888888764
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-20 Score=208.57 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=187.6
Q ss_pred CCCCeEEEEEe--CCE----EEEEe-CCeEEEEECCC---C---cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEE
Q 004683 452 PKDSISCFALR--GSH----LFSAS-GGKISIFSLET---F---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 516 (737)
Q Consensus 452 h~~~V~~v~~s--~~~----l~s~s-dg~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~ 516 (737)
.....+.++|. |.. |+.|. ||.|.+||... + ..+.+...|.+.|..+.|++.. .+|+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 45667889998 443 66666 89999999865 2 3455667899999999999987 999999999999
Q ss_pred EEecCCCcEEEEEc--CCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 517 VHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 517 vwd~~~~~~~~~l~--~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
|||+..-+.-.... ...+.|.+++|+.. ...|++++.+|.+.|||++.. +++-.+..... ...+..++|+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-----~pii~ls~~~~--~~~~S~l~Wh 215 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-----KPIIKLSDTPG--RMHCSVLAWH 215 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----CcccccccCCC--ccceeeeeeC
Confidence 99998644333331 14578999999874 456889999999999999983 22221222211 1458899999
Q ss_pred cCC-CEEEE-Ee-c--CcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 594 PDQ-IHLLS-IH-E--GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 594 p~g-~~l~~-~~-d--g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
|+. ..+++ +. | -.|.+||++. ..+++++.+ |...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 997 34444 43 3 3699999985 445666644 78999999999855 899999999999999999999999886
Q ss_pred cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 667 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 667 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
. ..-++..+.|+|.+...+++++-||.|-|+.+....
T Consensus 294 ~----------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 A----------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C----------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 3 234566999999888899999999999999998764
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=176.05 Aligned_cols=244 Identities=18% Similarity=0.222 Sum_probs=183.2
Q ss_pred CCCCCeEEEEEe--CC--EEEEEe-CCeEEEEECCC----------------CcEEEEecCCCCCeEEEEEcCCC--eEE
Q 004683 451 DPKDSISCFALR--GS--HLFSAS-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 507 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~--~l~s~s-dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~~--~l~ 507 (737)
.|.+.++.+.-+ ++ +.++-+ .|.|+||++.. .+.+.++.+|...=..++|||-. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577777777776 44 444445 69999999842 24567788898888899999955 799
Q ss_pred EEECCCeEEEEecCCCcEE---EEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCC
Q 004683 508 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~~---~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 583 (737)
+|..-+.|++|...+|.-. ..+.+|+..|-.++|+|.. ..+++||.||+|+|||++.+... .++. ...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeE--eeccC--
Confidence 9998999999999887543 3466799999999999954 57999999999999999986332 2232 24555
Q ss_pred CCCeEEEEEecCCCEEEEE-ecCcEEEEeCCC---CceeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCC
Q 004683 584 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~---~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~ 658 (737)
+.|+.|.|+..-.+|++| .||+++|||++. ++++..|+- |..+|+++.|+| +...+++++.|.+|.+||+..
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 789999999998888885 789999999985 567788865 799999999999 456788899999999999863
Q ss_pred Cee-----------EEEEecc-cccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEe
Q 004683 659 LEL-----------RCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 659 ~~~-----------~~~~~~~-~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd 708 (737)
..- +..+++. .|+-.| ...+. .+.||++.+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence 221 1111111 111112 22333 8999998888999999998 44543
No 159
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.4e-18 Score=156.00 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=201.1
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 468 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s 468 (737)
..|..-++||.+++|++|+.+|+|-+..+.+... +.. .......+. ..++|+++|+.++|.+.+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s--~sa---------~~~gk~~iv--~eqahdgpiy~~~f~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS--GSA---------EPPGKLKIV--PEQAHDGPIYYLAFHDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhc--ccc---------CCCCCccee--eccccCCCeeeeeeehhheee
Confidence 4577789999999999999999999998775322 000 001111111 112799999999999999999
Q ss_pred EeCCeEEEEECCCCcE------EEEe--cC-----CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc
Q 004683 469 ASGGKISIFSLETFQT------LATF--AN-----PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 469 ~sdg~i~vwd~~~~~~------~~~~--~~-----~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
|+||.|+-|....... +... .- .-..|+++...|.. -++.++.|+.++-||+++|+...+++||+.
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999999997653221 1111 11 12368899999887 666666899999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee---cccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEe
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 611 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd 611 (737)
.|.+++--.....+++|+.||++|+||.++++......... ....|.. ..|.+++. +..++++|....+.+|+
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~--~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAV--NEDWLVCGGGPKLSLWH 233 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEec--cCceEEecCCCceeEEe
Confidence 99999985555679999999999999999965543322211 1111211 34555554 46799998888999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
+++.++...+.. ...+..+.|. .+.++++++.+.|.-|.+. |.+....+. + ....+ ..+|+.+-
T Consensus 234 Lrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~--s~~c~--s~s~~~~p 297 (325)
T KOG0649|consen 234 LRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV------E--STACY--SASWQTSP 297 (325)
T ss_pred ccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC------C--cccee--eecccCCc
Confidence 999999888865 5667788885 4578888888899999876 444333332 2 22233 55555422
Q ss_pred CCEEEEEECCCcEEEE
Q 004683 692 PNRIALGLTNGRVHVI 707 (737)
Q Consensus 692 ~~~las~s~Dg~V~iW 707 (737)
-+++..++..+.+.|+
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 4566667777777775
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=6.1e-19 Score=182.55 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=97.5
Q ss_pred CCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 386 SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 386 ~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
+|++.|..+.||| +...||+||.|..|+||.+..+.. .. + ...+..+ ++.+-.|.++.|+
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~---q~-------L--Sape~~~-----g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS---QK-------L--SAPEIDV-----GGGNVIVECLRFHPT 139 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcc---cc-------c--CCcceee-----cCCceEEEEeecccC
Confidence 4999999999999 445789999999999999873211 00 0 0001111 1344567899999
Q ss_pred -CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC
Q 004683 463 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 463 -~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~ 522 (737)
++.++++..|++++||+.+++.+..+.+|...|.+..|+.|| .+++++.|..|+|||.+.
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 788898889999999999999999999999999999999999 999999999999999873
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=174.82 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=191.2
Q ss_pred CCCCCeEEEEEe---C-CEEEEEe-CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEe
Q 004683 451 DPKDSISCFALR---G-SHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 519 (737)
Q Consensus 451 ~h~~~V~~v~~s---~-~~l~s~s-dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd 519 (737)
-+...|++++|+ . +.+++|. .|+|-+||+.+ ...+..+..|..+|.++.|+|.+ ++++.|.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 378999999999 4 5666666 79999999953 23456677999999999999998 999999999999999
Q ss_pred cCCCcEEEEEcC--CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 520 PCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 520 ~~~~~~~~~l~~--~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
++++..-..+.. ....+.++.|+.+...++.+..=|...+||++++.. ... ...-|. ..|.+++++|...
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----~~~-~~~lh~---kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----EYE-NLRLHK---KKITSVALNPVCP 335 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----cch-hhhhhh---cccceeecCCCCc
Confidence 987654333322 445677888888888888888888999999998432 111 122344 5799999999886
Q ss_pred EEE-E-EecCcEEEEeCCCCceeEE--ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC----CCeeEEEEeccc
Q 004683 598 HLL-S-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS----TLELRCQINLTA 669 (737)
Q Consensus 598 ~l~-~-~~dg~I~iwd~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~----~~~~~~~~~~~~ 669 (737)
+++ + |.|++.+|||++....... +..-.|...|.++.|||.+..|++.+.|+.|+|||.. .-.+...+. |.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-cc
Confidence 655 4 5899999999986433222 3333589999999999988789999999999999984 334444443 21
Q ss_pred ccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeee
Q 004683 670 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 670 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~ 717 (737)
.. ++.........|.| +..++++|-.-..|-|+|...++....
T Consensus 415 ~~----t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 415 NR----TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred Cc----ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeee
Confidence 11 12345567899999 789999999999999999988774433
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2e-18 Score=179.67 Aligned_cols=271 Identities=14% Similarity=0.192 Sum_probs=201.0
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004683 390 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 467 (737)
Q Consensus 390 ~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 467 (737)
.|..++|-|||..|+.+..+ .+.+ ||++.|..++.+. +|.+.|.|++|+ |+.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlli---------------------yD~ndG~llqtLK--gHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLV---------------------YDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEE---------------------EeCCCcccccccc--cccceEEEEEEccCCceec
Confidence 89999999999988877654 4444 5555666666555 899999999999 99999
Q ss_pred EEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 468 SAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 468 s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
+|+ |..|.+|+..-. ..++ .|.+.|.|+.|+|-. .+++++-. ..-+|........ ..+ ....+.+++|..|
T Consensus 70 SG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTND 143 (1081)
T ss_pred cCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCC
Confidence 999 999999986432 2233 789999999999999 88888753 5678876654322 222 3467889999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-----CEEEE-EecCcEEEEeCCCCcee
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHT 618 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-----~~l~~-~~dg~I~iwd~~~~~~~ 618 (737)
|.+++.|-.+|+|.+-+-...+ ...++ .+.|.. .+|++++|+|.. ..+++ -...++..|.+ +|+.+
T Consensus 144 GqylalG~~nGTIsiRNk~gEe---k~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I 215 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEE---KVKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI 215 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCc---ceEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence 9999999999999998655422 12233 344443 799999999974 33444 35567777777 45544
Q ss_pred EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 619 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 619 ~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
..-.. -.-...|+.+-++|.+++.|+.|+.+.+|..+ |-.+.++ |..++.+| .|+.+| ++++++.|
T Consensus 216 gk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--------g~~D~WIW--tV~~~P-NsQ~v~~G 281 (1081)
T KOG1538|consen 216 GKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--------GEQDSWIW--TVQAKP-NSQYVVVG 281 (1081)
T ss_pred ccccc--CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--------cccceeEE--EEEEcc-CCceEEEE
Confidence 32211 13455688899999999999999999999755 4445544 22255566 999999 89999999
Q ss_pred ECCCcEEEEecCCC
Q 004683 699 LTNGRVHVIEPLES 712 (737)
Q Consensus 699 s~Dg~V~iWd~~~~ 712 (737)
..||+|.-|++...
T Consensus 282 CqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 282 CQDGTIACYNLIFS 295 (1081)
T ss_pred EccCeeehhhhHHh
Confidence 99999999998643
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.4e-17 Score=165.21 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=210.1
Q ss_pred CCCeEEEEEecCCC-EEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 388 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 388 ~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
..+|..+.|.+++. .++||+.|..|++|.+.......|.. .+.......+|...|+++.|+ |+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~--------------~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM--------------KVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce--------------eEEEeecccCCcceeEEEEEcCCcC
Confidence 46899999998776 99999999999999987654311111 111111222799999999999 89
Q ss_pred EEEEEe-CCeEEEEECC--------C--------CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 465 HLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
.+++|+ +|.|.+|-.. + ....+.+.+|...|..++|+|++ .+++|+.|..+++||+..|+..
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 999999 6999999765 2 23345667899999999999999 9999999999999999999999
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc--CCC-C-----------CCCCeEEEEE
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLV-P-----------ETTIVNHIQF 592 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~--~~~-~-----------~~~~v~~l~~ 592 (737)
..+..|...+..++|.|-++++++-+.|...+.+++.............++. ++. . ...-...++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999988877776533222111010111 000 0 0012335789
Q ss_pred ecCCCEEEE--E---ecCc-----EEEEeCCC-CceeEEecCCCCCCCeEEEEEccC-----------------CCEEEE
Q 004683 593 HPDQIHLLS--I---HEGQ-----IDVYEAPT-LNHTSQLVPDKMDLPITYATYSCD-----------------GKCIYV 644 (737)
Q Consensus 593 sp~g~~l~~--~---~dg~-----I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~-----------------~~~l~s 644 (737)
+|+|..+++ + ..+. .++|+-.. .++...+.. ...+...+.|+|- -+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999886 2 2333 35554332 233333332 1334444444431 123334
Q ss_pred EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 645 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 645 gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
......|+|||..+..+........ -.. ++.++|++ ||..++..|.||..-+-.++..+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nih-------y~~--iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIH-------YSA--ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeecceEEEeccccccceEEEeeee-------eee--ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 3445679999999988887765321 223 45999999 89999999999987776666544
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=168.79 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCC----------------CcEEEEEcCCCcceEEEEEeCCC-CEEE
Q 004683 490 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLSL-NVLV 549 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~----------------~~~~~~l~~~~~~v~~l~~sp~g-~~l~ 549 (737)
+|.+.+..+..++-+ ..++=+..|.|+|||+.. .+++.++.+|...=..+.|||-. ..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 555666666665554 667777889999999852 24677888999999999999932 2478
Q ss_pred EEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE-EE-EecCcEEEEeCCCCceeEEecCCCCC
Q 004683 550 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-IHEGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 550 s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~-~~dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
+|..-+.|++|...++.-... +.-..+|+ ..|-.++|||..+-+ ++ +.||+|+|||++.+.....+....|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVD---QRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cCccccceEeeeeccCceeec---Cccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 888889999999887543221 11234577 799999999987554 45 49999999999988433232224578
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCC---CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcE
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 704 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~---~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V 704 (737)
+.|+.+.|+.+..+||+|++||+++|||++. ++++..+..| ..+|+ ++.|+|.+...|+++|.|..|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--------k~pIt--sieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--------KAPIT--SIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--------cCCee--EEEeccccCceEEeccCCCcE
Confidence 9999999999888999999999999999874 5677777654 55566 999999888899999999999
Q ss_pred EEEecCCC
Q 004683 705 HVIEPLES 712 (737)
Q Consensus 705 ~iWd~~~~ 712 (737)
.|||+.-.
T Consensus 373 tiWDlsvE 380 (440)
T KOG0302|consen 373 TIWDLSVE 380 (440)
T ss_pred EEEEeecc
Confidence 99999753
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.8e-18 Score=164.92 Aligned_cols=298 Identities=12% Similarity=0.059 Sum_probs=206.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.+.|.++.||.+|++|++|+.|..+++|++...- -..+.+.+...- ..|.+.|.|++|. +.
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~---------------~~k~~KPI~~~~-~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM---------------VRKTPKPIGVME-HPHRSNIFSLEFDLENR 118 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHH---------------hhcCCCCceecc-CccccceEEEEEccCCe
Confidence 99999999999999999999999999999987321 112222222211 1477899999999 66
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecC--CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc-EE--EEEcCCCcceE
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TK--AKLKGHQNRIT 537 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~-~~--~~l~~~~~~v~ 537 (737)
.+++|+ +++|...|+++.+.+..+.. ..+.|..+..+|.. .+++.+.++.|.+||.+... .+ ...........
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 788888 89999999999888877752 33589999999999 99999999999999998654 22 22233455677
Q ss_pred EEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeee--cccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCC
Q 004683 538 CLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 613 (737)
Q Consensus 538 ~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~ 613 (737)
++.|+|.. .+|++++..+.+-+||.+... .++.. ...+-......-.++.|+|+|..+.+- ....-.+||+-
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQA----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeecccc----chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 88999954 678888899999999998632 11110 111111001234678999999988874 44456678886
Q ss_pred CCceeEEecCC-CC-----CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEE----------------Eeccccc
Q 004683 614 TLNHTSQLVPD-KM-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ----------------INLTAYA 671 (737)
Q Consensus 614 ~~~~~~~~~~~-~h-----~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~----------------~~~~~~~ 671 (737)
+.++. .++.. .. ...+.+++|.-|- -+++|+.+-.|++|.+.......- +.....+
T Consensus 275 S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V 352 (609)
T KOG4227|consen 275 SQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV 352 (609)
T ss_pred cccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEE
Confidence 64432 22221 11 2346677786554 499999999999999863211111 1111122
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
..||.+ - +..|.|+| ...+|++.+-.+.++||...
T Consensus 353 LrGHRS-v--~NQVRF~~-H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 353 LRGHRS-V--PNQVRFSQ-HNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred Eecccc-c--ccceeecC-CcceEeccchhhheeccccc
Confidence 335432 2 34899999 78899999999999999874
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=2.2e-15 Score=164.06 Aligned_cols=326 Identities=21% Similarity=0.297 Sum_probs=240.8
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCC-ceeeeecCCCCCCCCeEEEEE-ecCCC-EEEEEEC-CCcEEEeecc
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQ 418 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~-~~~~~~l~~~~h~~~V~~v~f-spdg~-~L~s~s~-dg~i~iWd~~ 418 (737)
....+.+++..++.++.|+.+.+|+.... . .... +.+. +...+..+.+ ++++. +++..+. |+.+.+|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNG---EKLIKS--LEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCC---ceeEEE--Eecc-CCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 33447889999999999999999999852 2 2222 3220 2236777777 88888 5555455 8999999876
Q ss_pred CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCC
Q 004683 419 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI 494 (737)
Q Consensus 419 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~ 494 (737)
.. ........ .|...|.+++|+ +..+++++ ++.+++|++.++..+..+.+|...
T Consensus 143 ~~--------------------~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (466)
T COG2319 143 TP--------------------GKLIRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200 (466)
T ss_pred CC--------------------CeEEEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc
Confidence 30 11111111 699999999999 66777776 899999999998999999999999
Q ss_pred eEEEEEcCCC-eEEEE-ECCCeEEEEecCCCcEEE-EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004683 495 ATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 495 v~~~~~s~~~-~l~sg-s~dg~I~vwd~~~~~~~~-~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
|.+++|+|++ .++++ +.|+.|.+||...+.... .+.+|.... ...|+|++..+++++.|+.+++||+.....
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 9999999998 45544 999999999998888887 688887775 448999998999999999999999987432
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSG 649 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg 649 (737)
.+... .+|. ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+
T Consensus 276 ~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 276 LLRTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence 12222 4454 78999999998888887 56788999999887766655412356678999994343556555 6889
Q ss_pred eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE-EECCCcEEEEecCCCceeeee
Q 004683 650 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 650 ~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las-~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
.+++|+............ ... +..+.+++ + ..+.. +..++.+.+|+..........
T Consensus 352 ~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 352 TIRLWDLRTGKPLKTLEG---------HSN--VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred cEEeeecCCCceeEEecC---------Cce--EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence 999999998872222211 111 44888988 7 55555 889999999999887654433
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=2.4e-17 Score=159.06 Aligned_cols=272 Identities=16% Similarity=0.154 Sum_probs=192.1
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC----CCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd----g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
+|+++ .+.+.+|...........+. .....|...-..++|+-| ..++|.||.-|.|+|.|+.+.
T Consensus 58 fatvG-~~rvtiy~c~~d~~ir~lq~--y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--------- 125 (385)
T KOG1034|consen 58 FATVG-GNRVTIYECPGDGGIRLLQS--YADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--------- 125 (385)
T ss_pred EEEeC-CcEEEEEEECCccceeeeee--ccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---------
Confidence 44444 45677887765210111122 222337788899999854 468999999999988776643
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEec---CCCCCeEEEEEcC
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLP 502 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~ 502 (737)
.+...+. +|...|+.+.+. .+++++++ |..|++|++++..++..+- +|.+.|.++.|++
T Consensus 126 ------------~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 126 ------------QCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ------------hhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 3333333 799999999999 56999999 9999999999999999885 8999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEE----------------------------EEcCCCcceEEEEEeCCCCEEEEEeC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKA----------------------------KLKGHQNRITCLAYSLSLNVLVSSGA 553 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~----------------------------~l~~~~~~v~~l~~sp~g~~l~s~s~ 553 (737)
+| ++++++.|.++++|++...+... +-.-|...|-|+.|- |+++++-|.
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99 99999999999999997332100 111255566666664 578999999
Q ss_pred CCcEEEEeCCC-Ccee--------eceeeeecccCCCCCCCCeEEEEE--ecCCCEEEEE-ecCcEEEEeCCCCcee--E
Q 004683 554 DAQLCVWDAVG-WKKL--------CSKFLHSFQTGLVPETTIVNHIQF--HPDQIHLLSI-HEGQIDVYEAPTLNHT--S 619 (737)
Q Consensus 554 dg~I~lwdl~~-~~~~--------~~~~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~~~-~dg~I~iwd~~~~~~~--~ 619 (737)
++.|..|..-. .+.. ....+.++.-. +..|+-+.| .|-+++|+.+ ..|.|++||++...+. .
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~----~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP----MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccC----ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 99999997721 1110 00111111111 135555554 5667888886 8899999999877653 2
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
++........|...+||.||.+|+..++|++|.-||.-
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 22222236789999999999999999999999999864
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=2.7e-15 Score=163.43 Aligned_cols=312 Identities=21% Similarity=0.284 Sum_probs=231.8
Q ss_pred CCCCC-EEEEEec-CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccc
Q 004683 348 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 424 (737)
Q Consensus 348 spdg~-~la~~s~-dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~ 424 (737)
.+++. .++..+. |+.+.+|+... ...... .+.+ |...|..++|+|++.++++++. |+.+++|+...
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 187 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST---PGKLIR-TLEG--HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----- 187 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC---CCeEEE-EEec--CcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----
Confidence 67777 5555455 89999999874 122222 2444 8999999999999999999986 99999998763
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC-EEEEEe-CCeEEEEECCCCcEEE-EecCCCCCeEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI 499 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~-~l~s~s-dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~ 499 (737)
+....... +|...|.+++|+ +. .+++++ |+.|++||...+.... .+.+|...+ ...
T Consensus 188 ----------------~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 188 ----------------GKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred ----------------CceEEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 11111111 588999999999 55 555546 8999999998888888 688888775 448
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcE-EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
|+|++ .+++++.|+.+++|+...... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........ .
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~ 324 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L 324 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence 99999 888999999999999987664 44456788999999999988888889999999999988743222111 1
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEE
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF 654 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s-gs~dg~I~vw 654 (737)
..|. ..+..+.+.+++..++.+ .|+.+.+|+............ ...+..+.+++ ...++. +..++.+.+|
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 2443 458888884332455553 778899999987773333322 22288999988 544444 6889999999
Q ss_pred EcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 655 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 655 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+............. ... +....+.+ ++..+++++.++.+++|++.+
T Consensus 398 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDGH--------TSR--VTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccCC--------CCc--EEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 99998877766432 022 34788888 788999999999999999988
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5e-16 Score=168.41 Aligned_cols=358 Identities=15% Similarity=0.145 Sum_probs=248.9
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEeeccCCcc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg---~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.||+|++.++... +..|.||... ++.|... +++ |..++..+.+.|.. .++.+++.||+|++||+..+..
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~----Tg~~i~~-l~~--~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTA----TGECITS-LED--HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecc----hHhhhhh-ccc--ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 4899999887665 5789999998 5777774 887 99999999998865 4788999999999999987655
Q ss_pred -----cccccc------------------------------------ee-------------------------------
Q 004683 423 -----SLEEEN------------------------------------VN------------------------------- 430 (737)
Q Consensus 423 -----~~g~~~------------------------------------~~------------------------------- 430 (737)
..++.. ..
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 000000 00
Q ss_pred ------eeeEEeecCCCe--eeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC----CcEEEEecCCCCCe
Q 004683 431 ------MESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIA 495 (737)
Q Consensus 431 ------~~~~l~~~~~~~--~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~----~~~~~~~~~~~~~v 495 (737)
....+|...++. .........|...+++++++ ++++|+|. ||.|.+|.--. ......+.-|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 001344443322 11111112577778999999 88999998 99999996432 22345566788899
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
.+++|+++| +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|+.|.+....+.+.. ..++
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tIs 331 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STIS 331 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhcc
Confidence 999999999 99999999999999999988 4445556789999999999999999999999999877542211 1111
Q ss_pred ecccC----CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC---C------CCCCeEEEEEccCCC
Q 004683 575 SFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---K------MDLPITYATYSCDGK 640 (737)
Q Consensus 575 ~~~~~----~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~---~------h~~~v~~~~~sp~~~ 640 (737)
.+... .....+-.+.++++|..+.++. +..|.|.+||+-+.+.+..+..- . +...+++++.+..|.
T Consensus 332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs 411 (792)
T KOG1963|consen 332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS 411 (792)
T ss_pred CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence 11111 0001145678899995555554 79999999999877665544321 1 133577888888899
Q ss_pred EEEEEec--------C--CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 641 CIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 641 ~l~sgs~--------d--g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+++|+-. | -.+++|..........+......|+| .. .+..+..+|......++++.||.++||-+.
T Consensus 412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~--~vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NA--FVATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ce--eEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 9998642 3 35788988877666666555555544 32 222444555344489999999999999993
Q ss_pred ------CCceeeee
Q 004683 711 ------ESEVEWGK 718 (737)
Q Consensus 711 ------~~~~~w~~ 718 (737)
.....|..
T Consensus 488 ~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 488 DDSNIYKKSSNWTC 501 (792)
T ss_pred cccccCcCccceEE
Confidence 34445655
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.4e-18 Score=189.80 Aligned_cols=239 Identities=16% Similarity=0.219 Sum_probs=183.7
Q ss_pred ccCCCCCE----EEEEecCCeEEEeecCccCCCCcee-eeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEeeccC
Q 004683 346 TSLPDADS----AVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQS 419 (737)
Q Consensus 346 ~~spdg~~----la~~s~dg~v~iW~~~~~~~~~~~~-~~~l~~~~h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~~~ 419 (737)
.|.+.|.. ||.|..||.|.+|+........... ..+... |++.|..+.|++.+. .||+|+.||.|.|||+..
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~--h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK--HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc--cCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 36666665 8999999999999987531112111 111333 999999999999766 999999999999999885
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCC--
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP-- 493 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~-- 493 (737)
.+.+- . .+ .....+.|.+++|+ ...|++++ +|.+.|||++..+.+-.+..+.+
T Consensus 149 ~~tP~------------~--~~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 149 PETPF------------T--PG-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred cCCCC------------C--CC-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 33200 0 00 00356789999999 67888988 89999999998887777765544
Q ss_pred CeEEEEEcCCC--eEEEEECCC---eEEEEecCC-CcEEEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc
Q 004683 494 IATYFILLPQD--LFAFGFDDS---SILVHCPCT-KKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg---~I~vwd~~~-~~~~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~ 566 (737)
.+..++|+|++ .+++++.|. .|.+||++. ...++.+++|+..|.++.|++.+ .++++++.|+.|.+|+.++++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 47889999999 777777665 799999875 35678889999999999999966 889999999999999999965
Q ss_pred eeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCcEEEEeCCCCc
Q 004683 567 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN 616 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~I~iwd~~~~~ 616 (737)
.+ ..++... .++..+.|+|... .+++ +-||.|.||.+....
T Consensus 288 vl-----~~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 288 VL-----GELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred Ee-----eecCCCC----cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 43 3344422 6899999999876 4444 699999999987544
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=173.63 Aligned_cols=297 Identities=13% Similarity=0.169 Sum_probs=219.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.+ |.+.|..|.|+..|..|++||.|..|.+|||..... .. .. ..+|...|..-.|
T Consensus 138 L~~--H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-----~l-------~f----------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 138 LNK--HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-----KL-------SF----------ESGHCNNVFQAKF 193 (559)
T ss_pred ccC--CCCccceeeecccCceeeccCccceEEeehhhccCc-----cc-------cc----------ccccccchhhhhc
Confidence 444 999999999999999999999999999999885432 11 11 1257777776666
Q ss_pred e----CCEEEEEe-CCeEEEEECCC-CcE--EEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc-
Q 004683 462 R----GSHLFSAS-GGKISIFSLET-FQT--LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK- 530 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~- 530 (737)
- ...+++++ ||.|++=.+.. +.+ ...+..|.+.|.-++.-|+. .|.+++.|+.+.-+|++++.+...+.
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee
Confidence 5 56788888 99999887643 333 33455899999999999999 89999999999999999876544332
Q ss_pred --CCCc---ceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceee-ceeeeecccCCC--CCCCCeEEEEEecCCCEEEE
Q 004683 531 --GHQN---RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 531 --~~~~---~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~-~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~ 601 (737)
.+.. ...+++.+|... .+++++.|..+++||.+.-.... ..++.++...|. .....|++++++.++.-+++
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 2233 567888998654 79999999999999987632210 111222222221 11267999999988766666
Q ss_pred E-ecCcEEEEeCCC--C----------cee-EEecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 602 I-HEGQIDVYEAPT--L----------NHT-SQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 602 ~-~dg~I~iwd~~~--~----------~~~-~~~~~~~h~~~v~~~~~-sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
+ .|-.|+++.-.. | ..+ +.++++.....|.++-| .|...|+++||+-|.|.||+-.+++.+..+.
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 5 888999995432 2 112 23666555667888875 6899999999999999999999999887775
Q ss_pred cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 667 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 667 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+- .+ .|.|+.-|| .-.+||++|-|..|+||-+.+.+
T Consensus 434 gD--------r~--VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 GD--------RH--VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cc--------cc--eEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 32 22 345999999 67899999999999999996654
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.7e-16 Score=144.85 Aligned_cols=275 Identities=16% Similarity=0.223 Sum_probs=189.3
Q ss_pred cCCCCCEEEEEecCCeEEEeecCcc-----CCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLI-----NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~-----~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
++|.+++++.|..+|+|-+..+... ..+++...+..++ |.++|+.++|. ..+|++|+. |.|+-|.+....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa--hdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA--HDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc--cCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 8899999999999999999987632 2244444443444 99999999998 346777765 999999987533
Q ss_pred ccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 422 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 422 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
.. ...-++|........- . -.-..|+++-.. +..+.+|+|+.++-||+++|+..+.+++|.+.|.++
T Consensus 93 es------~~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 93 ES------LATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred hh------ccchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 21 0011345543322110 0 123456776666 667777779999999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC----------cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~----------~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
.-.... .+++|+.||++++||.++++++..+.... ..|.+++. +..++++|+ ...+.+|.+++.+.
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 885555 99999999999999999999988775321 23444443 456777765 56789999999666
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC-CCEEEEE
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVS 645 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sg 645 (737)
.+..++. .++..+.|-.+ .+++ |..+.|.-|.+ +|......... ....++..|+.. -+++-.+
T Consensus 240 t~vfpip----------a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 240 TCVFPIP----------ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFISIA 304 (325)
T ss_pred eEEEecc----------cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEEec
Confidence 5554444 57888888654 4444 56678888887 45444333332 334555555532 3455566
Q ss_pred ecCCeEEEE
Q 004683 646 CKSGHVKVF 654 (737)
Q Consensus 646 s~dg~I~vw 654 (737)
+..+.+.|+
T Consensus 305 g~s~~~~i~ 313 (325)
T KOG0649|consen 305 GFSNKLHIL 313 (325)
T ss_pred ccceeeeee
Confidence 666666664
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=4.9e-17 Score=154.24 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=155.1
Q ss_pred EEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE-EEEEc-----CCCcceEEEEEeC--CCCEEEEEeC
Q 004683 484 TLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK-----GHQNRITCLAYSL--SLNVLVSSGA 553 (737)
Q Consensus 484 ~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~-~~~l~-----~~~~~v~~l~~sp--~g~~l~s~s~ 553 (737)
++..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+. ++....++-+|+| +|+.+++.+
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence 334443 344589999999999 887766 88999999987765 33332 2566778889998 777777654
Q ss_pred CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCC-CceeEEecCCCCCCCe
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-LNHTSQLVPDKMDLPI 630 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v 630 (737)
|+++..||+++ ......+...|. ..|..+.|+|+..++++ + .||.|++||.+. ..++.++. +|...|
T Consensus 192 d~tl~~~D~RT-----~~~~~sI~dAHg---q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWv 261 (370)
T KOG1007|consen 192 DSTLQFWDLRT-----MKKNNSIEDAHG---QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWV 261 (370)
T ss_pred CCcEEEEEccc-----hhhhcchhhhhc---ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEE
Confidence 89999999998 333444666776 68999999999877665 4 889999999985 44666664 478999
Q ss_pred EEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEe---------------cccccCCC------CccCceeeEEEEEc
Q 004683 631 TYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQIN---------------LTAYAQPG------TISLELYPLVIAAH 688 (737)
Q Consensus 631 ~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~---------------~~~~~~~g------~~~~~v~~~~v~~s 688 (737)
+++.|+| ..+++++|+.|..|.+|...+-.....+. .+...+.| .+...|| +++|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY--~~aWS 339 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY--ALAWS 339 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE--EEeec
Confidence 9999998 56788899999999999865422111110 00011111 1244466 99999
Q ss_pred cCCCCEEEEEECCCcEEEEecC
Q 004683 689 PLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~ 710 (737)
..|+-+||+-+.||.+.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 9888899999999999886663
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.1e-18 Score=173.36 Aligned_cols=259 Identities=15% Similarity=0.173 Sum_probs=183.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.+.|..++|.|....|++|+.||++.+|+++.... ...+.+...+...+|.++|.|++++ +.
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~---------------s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK---------------SAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC---------------ccccceeeeEEEecccCceEEEEecCCce
Confidence 899999999999999999999999999999953111 0111122222223899999999999 99
Q ss_pred EEEEEe-CCeEEEEECCCC----------cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 465 HLFSAS-GGKISIFSLETF----------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
++++|+ ||+|+.|++... .....+.||.+.|+.+++|+.. .|++++.||+++.|+...... .++...
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999 999999966421 2345677999999999999999 999999999999999876655 444332
Q ss_pred --CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC---CCCCeEEEEEecCCCEEEEE-ecCc
Q 004683 533 --QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---ETTIVNHIQFHPDQIHLLSI-HEGQ 606 (737)
Q Consensus 533 --~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~~-~dg~ 606 (737)
.+...++.+-.. ..+....+.....+++.+.+.... +..+...-.+ ....+..+.++|.+...+++ .|+.
T Consensus 437 ~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 222334444322 222222233333333332111111 1111111111 01457788999999888885 8999
Q ss_pred EEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 607 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
|+++|..++.++..... |...++++++.|+|.+|++|+.||.+++|.+....++....+
T Consensus 513 Ir~~dn~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred eecccccccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 99999999999888765 688999999999999999999999999999987666555443
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.2e-16 Score=157.72 Aligned_cols=230 Identities=13% Similarity=0.138 Sum_probs=172.0
Q ss_pred CCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004683 385 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 462 (737)
Q Consensus 385 ~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s- 462 (737)
.||+++|..++|+| +...+||||.|.+|.||.+..+.. .... .+.+..+. +|...|.-++|+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-----~~~l---------tepvv~L~--gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-----TRDL---------TEPVVELY--GHQRRVGLVQWHP 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccc-----ccCc---------ccceEEEe--ecceeEEEEeecc
Confidence 45999999999999 456789999999999999875332 1111 12222222 899999999999
Q ss_pred --CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc-ceE
Q 004683 463 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT 537 (737)
Q Consensus 463 --~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~-~v~ 537 (737)
.+.|++++ |.+|.+||+.+|+.+-++. |...|.++.|+.|| ++++.+.|..|+|||.++++.+..-.+|.+ .-.
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 77888888 9999999999999988887 99999999999999 999999999999999999999988877764 344
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeC
Q 004683 538 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 612 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s---~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~ 612 (737)
.+.|-.+|..+.+|- .+..+-+||...-+.. ..++.+... +.|.---|.|+.+.+.. | .|+.|+-|.+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP--IALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCc--ceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 567888888555543 3678999998763211 122223222 56888888999988887 5 8999999999
Q ss_pred CCCceeEEe-cCCCCCCCeEEEEEccC
Q 004683 613 PTLNHTSQL-VPDKMDLPITYATYSCD 638 (737)
Q Consensus 613 ~~~~~~~~~-~~~~h~~~v~~~~~sp~ 638 (737)
.+..+...+ ..-....+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 766543222 11112344556666664
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.1e-17 Score=164.73 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=150.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|.| |++.|+|+.|+.+|.+|++||+|-.+.|||....+ ++. ....||...|.++.|
T Consensus 46 L~G--H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K---------------------llh-sI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 46 LTG--HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK---------------------LLH-SISTGHTANIFSVKF 101 (758)
T ss_pred hcc--ccceecceeecCCCCEEeecCCcceEEeecchhcc---------------------eee-eeecccccceeEEee
Confidence 666 99999999999999999999999999999865321 111 111279999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCC----------CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc
Q 004683 462 R----GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~ 524 (737)
- ++.+++|. |..|+++|+.. ......+..|...|..++..|++ .+.+++.||+|+-+|++...
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 8 66778887 99999999974 23445567899999999999999 89999999999999998632
Q ss_pred E-------EE---EEcCCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCce-------------eeceeeeecccCC
Q 004683 525 T-------KA---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGL 580 (737)
Q Consensus 525 ~-------~~---~l~~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~-------------~~~~~~~~~~~~~ 580 (737)
. .. .+...--...|++.+|. ..+|++|+.|-..++||.+...+ ....+++-+..+|
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 1 11 11111234678899995 46799999999999999542100 0001122222233
Q ss_pred CCC--------CCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC
Q 004683 581 VPE--------TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 615 (737)
Q Consensus 581 ~~~--------~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~ 615 (737)
... ...++.+.|+|+|..|+++ ....|+++|+..+
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 210 0236678999999998887 4457999987643
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.4e-17 Score=156.33 Aligned_cols=276 Identities=13% Similarity=0.140 Sum_probs=182.6
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCeEE
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 475 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~i~ 475 (737)
..+|++-+.|+|++||..++ ..+.... ++...++.++|. ...+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg---------------------~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---------------------QLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccch---------------------hhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 56888888999999886632 2222222 677888888887 56788888 99999
Q ss_pred EEECCCCcEEEEe--cCCC-CCeEEEEEcCCC-eEEEEEC----CCeEEEEecCCCcE-EEEE-cCCCcceEEEEEeC-C
Q 004683 476 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S 544 (737)
Q Consensus 476 vwd~~~~~~~~~~--~~~~-~~v~~~~~s~~~-~l~sgs~----dg~I~vwd~~~~~~-~~~l-~~~~~~v~~l~~sp-~ 544 (737)
+||+++......+ ..+. .+..|++....+ .+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999876554433 3554 456777776666 7777764 55899999998765 4444 55999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC--CEEEEEecCcEEEEeCCCCceeEEec
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 622 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~~~dg~I~iwd~~~~~~~~~~~ 622 (737)
.++|++||.||-|.+||+..... ....++.+..+ ..|.++.|..++ +....+..++..+|+++.+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~-----sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHG-----SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc-hhhHHHhhccc-----ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 57899999999999999986311 11122222222 579999999988 54444899999999999887655443
Q ss_pred CCCC----------CCCeEEEEEcc-CCCEEEEEec-CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 623 PDKM----------DLPITYATYSC-DGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 623 ~~~h----------~~~v~~~~~sp-~~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
.+.- ...+... .+| ++...+.++. -|...++-+..-........ .....|++...+. ++.|..
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~-~a~l~g~~~eiVR--~i~~~~- 326 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE-PAILQGGHEEIVR--DILFDV- 326 (376)
T ss_pred CccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCc-cccccCCcHHHHH--HHhhhc-
Confidence 2210 1112221 123 4444544444 56666655442211111111 1122243444455 777776
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004683 691 EPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd~~ 710 (737)
.+.++.|||+||.+.+|...
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccceeeccCCCceEEEEecC
Confidence 68899999999999999964
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=9.3e-17 Score=158.50 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=163.1
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCC-------cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEE
Q 004683 451 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 517 (737)
Q Consensus 451 ~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~v 517 (737)
||.++|..++|+ +..+|+|+ |.+|.||.+..+ +.+..+.+|...|..++|+|.. .|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 799999999999 77899999 899999998654 3566788999999999999998 8899999999999
Q ss_pred EecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 518 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 518 wd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
||+.+|+.+.++. |...|.++.|+.||.++++.+.|+.|||||.++++..... .+|.. .....+.|-.+|.
T Consensus 159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK 229 (472)
T ss_pred EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence 9999999988888 9999999999999999999999999999999996544332 23332 4455677888888
Q ss_pred EEEEE----ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEEcCCCe
Q 004683 598 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLE 660 (737)
Q Consensus 598 ~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s-gs~dg~I~vwd~~~~~ 660 (737)
.+.+| ++..+-+||..+.+.-..+..-+.++.|.---|.+|.+.++. |-.|+.|+-|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55554 678999999876443222222233666777778899888874 5569999999988665
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.5e-15 Score=144.32 Aligned_cols=284 Identities=12% Similarity=0.116 Sum_probs=196.9
Q ss_pred CCCeEEEEEe--cC-CCEEEEEEC----CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 388 GGRVVRLIYS--HS-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 388 ~~~V~~v~fs--pd-g~~L~s~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
.-.+.++.|| |+ +-+||.||. .+.|.|-.+ +..+++.+..-.. .|.-+++.+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~l-------------------d~~s~e~~~~a~f-d~~YP~tK~~ 103 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQL-------------------DEDSGELVEDANF-DHPYPVTKLM 103 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEE-------------------ccCCCceeccCCC-CCCCCccceE
Confidence 4578889998 33 346777775 344544432 3344444433222 4889999999
Q ss_pred Ee-C---C--EEEEEeCCeEEEEECCC--CcEE--EEe-----cCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCC
Q 004683 461 LR-G---S--HLFSASGGKISIFSLET--FQTL--ATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 461 ~s-~---~--~l~s~sdg~i~vwd~~~--~~~~--~~~-----~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~ 523 (737)
|. . . -+++.++..+++|.+.. .+.. ..+ ..+..+++++.|+.-. ++.+++-|-+..|||++++
T Consensus 104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 98 2 2 24444456899999863 2211 111 2456789999998877 8999999999999999987
Q ss_pred cE---EEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-CE
Q 004683 524 KT---KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IH 598 (737)
Q Consensus 524 ~~---~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~ 598 (737)
.. ...+-.|...|..++|...+ ..+++.+.||+||+||++..+- ...+..-+..+ .+...++|++.. ++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~----~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPS----TPLLRLSWNKQDPNY 257 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCCC----CcceeeccCcCCchH
Confidence 33 55677899999999999855 4799999999999999997321 22222112212 578889999876 66
Q ss_pred EEE-E-ecCcEEEEeCCC-CceeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecc-cccCC
Q 004683 599 LLS-I-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQP 673 (737)
Q Consensus 599 l~~-~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~~~ 673 (737)
+|+ . ....|.|.|++. ..++..+.. |.+.|.+++|.| ....++++++|..+.+||+...-......+. .|.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-- 333 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-- 333 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence 776 5 456899999985 456667754 799999999999 5678999999999999999864331111111 111
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCcEEE
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 706 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i 706 (737)
.++.|+ .+.|+|..+..++.+... ++.|
T Consensus 334 --a~~EVN--qi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 334 --AGGEVN--QIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred --ccceee--eeeecccCCCEEEEEecC-eeeE
Confidence 134455 999998888999988643 4444
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.4e-16 Score=169.26 Aligned_cols=300 Identities=13% Similarity=0.084 Sum_probs=206.0
Q ss_pred CccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEeecc
Q 004683 341 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQ 418 (737)
Q Consensus 341 ~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp--dg~~L~s~s~dg~i~iWd~~ 418 (737)
......+.|-...++++.....|++||...+ .....+. .+..-...|..+.+-. |...+++|+.||.|+||+-.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~---~~l~~F~-n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG---RLLNGFD-NGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC---ceecccc-CCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3445557788888999988899999999852 2222211 1111246789999876 45689999999999999844
Q ss_pred CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCC
Q 004683 419 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPI 494 (737)
Q Consensus 419 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~ 494 (737)
......-+. +.-|..-++.... ..+.=.-+.|. ..+|+++| -..|+|||.....++..+. +.+..
T Consensus 1142 ~~~~~~~eL-----VTaw~~Ls~~~~~------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1142 ADKWKKPEL-----VTAWSSLSDQLPG------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred ccccCCcee-----EEeeccccccCcc------CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence 321100011 1224433332221 11111345677 55555555 5899999999888777775 44456
Q ss_pred eEEEEEcC-CC-eEEEEECCCeEEEEecCCCc---EEEEEcCCCcc--eEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCc
Q 004683 495 ATYFILLP-QD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR--ITCLAYSLSLNV-LVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 495 v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~---~~~~l~~~~~~--v~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~ 566 (737)
|+++.-+- .| .+++|..||.|++||.+... .+...+.|+.. |..+.+.+.|-. +++|+.||.|++||++...
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 67665543 34 99999999999999987543 46777888877 999999987754 9999999999999999842
Q ss_pred eeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCC-----CCCCCeEEEEEccCCCE
Q 004683 567 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKC 641 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~ 641 (737)
.... +. +.....- .+..+++..+++...+|+|..+.|.||++. |+.+..+... ...+.+.+++|+|..-+
T Consensus 1291 ~e~~--~~-iv~~~~y-Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1291 KETF--LT-IVAHWEY-GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred cccc--ce-eeecccc-CccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHh
Confidence 2111 11 2221110 035899999999999999766999999994 5444443321 12567899999999999
Q ss_pred EEEEecCCeEEEEEcCCCe
Q 004683 642 IYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 642 l~sgs~dg~I~vwd~~~~~ 660 (737)
+|+|+.|.+|.||....++
T Consensus 1366 lAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1366 LAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhccCCceEEEeecCCcC
Confidence 9999999999999877654
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=7.5e-15 Score=155.68 Aligned_cols=269 Identities=12% Similarity=0.143 Sum_probs=174.1
Q ss_pred EEEecCCeEEEeecCccCCCCc--eeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceee
Q 004683 355 VCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 355 a~~s~dg~v~iW~~~~~~~~~~--~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
++...++.|.+|++.. .+. .... ++ +.+....++++|+|++|++++. ++.|.+|++... |...
T Consensus 6 ~~~~~~~~I~~~~~~~---~g~l~~~~~-~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~----g~l~--- 71 (330)
T PRK11028 6 IASPESQQIHVWNLNH---EGALTLLQV-VD---VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD----GALT--- 71 (330)
T ss_pred EEcCCCCCEEEEEECC---CCceeeeeE-Ee---cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC----CceE---
Confidence 4446789999999963 222 2221 22 3456788999999999877654 788888887521 1110
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCC-C---cEEEEecCCCCCeEEEEEcCC
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-F---QTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~s~~ 503 (737)
..... ........++++ ++++++++ ++.|.+|++.+ + +.+..+.+ .....+++++|+
T Consensus 72 -----------~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~ 136 (330)
T PRK11028 72 -----------FAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPD 136 (330)
T ss_pred -----------Eeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCC
Confidence 01100 122345678898 88888877 79999999964 3 22333322 234567889999
Q ss_pred C-eE-EEEECCCeEEEEecCCCcEEE-------EEcCCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--Cceeece
Q 004683 504 D-LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 571 (737)
Q Consensus 504 ~-~l-~sgs~dg~I~vwd~~~~~~~~-------~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~--~~~~~~~ 571 (737)
+ ++ ++...++.|.+||+.+...+. ... .......++|+|+|++++++.. ++.|.+||+.. +......
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 9 55 455567899999997633221 111 1234678999999999988876 89999999973 2221111
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCc----eeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
.+..++.... +......+.++|+|++++++ .++.|.+|++.... .+..... ......+.|+|+|++|+++
T Consensus 216 ~~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 216 TLDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEE
Confidence 2221111110 00234468999999999986 56899999986432 2222222 2345678999999999987
Q ss_pred ec-CCeEEEEEcC
Q 004683 646 CK-SGHVKVFDTS 657 (737)
Q Consensus 646 s~-dg~I~vwd~~ 657 (737)
+. +++|.+|++.
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 75 8999999875
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=148.46 Aligned_cols=258 Identities=13% Similarity=0.177 Sum_probs=182.8
Q ss_pred ceeeeCCCCccccccCCCCCEEEEE-ec---C----CeEEEeecCccCCCCc-----eeeeecCCCCCCCCeEEEEEecC
Q 004683 333 SSCFNDNNQSRESTSLPDADSAVCA-KS---L----EKSVNLKLQLINEPSE-----CRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 333 s~l~~~~~~~~~~~~spdg~~la~~-s~---d----g~v~iW~~~~~~~~~~-----~~~~~l~~~~h~~~V~~v~fspd 399 (737)
..+|...+......-+|-.+.+.+. -. | ..+.||.+.....+.. |... |+. .+-+.|.|+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~-Ldt-eavg~i~cvew~Pn 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS-LDT-EAVGKINCVEWEPN 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc-CCH-HHhCceeeEEEcCC
Confidence 3455555666666667766555433 22 2 2358999876433321 2211 331 14568999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEeCCeEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKIS 475 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~sdg~i~ 475 (737)
+..+++-. |+.|.+|++..... ..+.+ ..... .+|....++-+|+ |+.+++.+|+++.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~----~vaev------------~ss~s-~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSK----IVAEV------------LSSES-AEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcc----hheee------------ccccc-ccccceecccccCCCCccceEEEeCCCcEE
Confidence 99988776 78999999885332 01111 00000 0356667778888 8899999999999
Q ss_pred EEECCCCcEEEEec-CCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-CcEEEEEcCCCcceEEEEEeCC-CCEEEE
Q 004683 476 IFSLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVS 550 (737)
Q Consensus 476 vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~-~~~~~~l~~~~~~v~~l~~sp~-g~~l~s 550 (737)
.||+.+.++...+. +|...|..+.|+|+. .|++|+.||.|++||.+. ..++..+.+|...|+++.|+|. ..++++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988777776 888899999999998 899999999999999875 4578899999999999999994 467889
Q ss_pred EeCCCcEEEEeCCCCce-------------------eeceeeee----cccCCCCCCCCeEEEEEecCCCEEEE--EecC
Q 004683 551 SGADAQLCVWDAVGWKK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEG 605 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~~~-------------------~~~~~~~~----~~~~~~~~~~~v~~l~~sp~g~~l~~--~~dg 605 (737)
|+.|..|.+|...+-.. .+.++++. ....|. ..|++++||.-..++++ +.||
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCc
Confidence 99999999997643110 01112221 222344 78999999998888887 5999
Q ss_pred cEEEEeCC
Q 004683 606 QIDVYEAP 613 (737)
Q Consensus 606 ~I~iwd~~ 613 (737)
++.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 99886654
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.2e-17 Score=165.64 Aligned_cols=249 Identities=14% Similarity=0.144 Sum_probs=187.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC--------CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 518 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vw 518 (737)
.|.+.|..++|. ...|++++ ||++++|++.. -+++.+|.+|.++|.|+++.+++ .+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 588999999999 78899999 99999999932 25678899999999999999999 99999999999999
Q ss_pred ecCCC----------cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 519 CPCTK----------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 519 d~~~~----------~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
++-.. .....+.||+..|+.+++++....|++++.||+++.|+...... +....+..+ +...
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~----g~Pl 443 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEH----GYPL 443 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----cccCCcccc----CCcc
Confidence 55311 23457789999999999999999999999999999999876432 111122222 3445
Q ss_pred EEEEecCC-CEEEEE-ecCcEEEEeCCCCceeEEecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 589 HIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 589 ~l~~sp~g-~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
++.+-... ...+++ .-+.-.+++...+..+..+.... ....+..+.+.|.+.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 56554433 222222 33444444544444444332211 134577888999999999999999999999999999
Q ss_pred EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 662 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
+.....| .+.++++++.| +|.+|++++.||.|++|.+....+.-..
T Consensus 524 l~s~~a~----------~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 524 LHSMVAH----------KDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred chheeec----------cceecceeecC-CCceEEeecCCceeehhhccchheeecc
Confidence 8877644 23355999999 8999999999999999999876654433
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=2.1e-14 Score=152.32 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=158.8
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCeEEEEECC-CCcE--EEEecCCCCCeEEEEEcCCC-eEEEEE-CCCeEEEEecCC-
Q 004683 453 KDSISCFALR--GSHLFSAS--GGKISIFSLE-TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT- 522 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~-~~~~--~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~- 522 (737)
.+....++++ +++|++++ ++.|.+|++. ++.. ..... .......++++|++ .+++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 3456678888 78887765 6899999996 3432 22222 23356789999999 666655 488999999864
Q ss_pred C---cEEEEEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeece--eeeecccCCCCCCCCeEEEEEecCC
Q 004683 523 K---KTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSK--FLHSFQTGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 523 ~---~~~~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~g 596 (737)
+ +.+..+. +.....+++++|+|+++++++ .++.|.+||+.+....... .......+ .....++|+|+|
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 3 2233333 223467789999999886555 5699999999762211100 00112223 356789999999
Q ss_pred CEEEEE--ecCcEEEEeCCC--Cc--eeEEecCCC----CCCCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCeeEEEE
Q 004683 597 IHLLSI--HEGQIDVYEAPT--LN--HTSQLVPDK----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 597 ~~l~~~--~dg~I~iwd~~~--~~--~~~~~~~~~----h~~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~~~~~~ 665 (737)
++++++ .++.|.+||+.. ++ .+..+.... +......+.++|++++++++.. ++.|.+|++........+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999874 479999999973 32 333332110 1223346889999999998865 689999999654322222
Q ss_pred ecccccCCCCccCceeeEEEEEccCCCCEEEEEEC-CCcEEEEecCC
Q 004683 666 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 711 (737)
Q Consensus 666 ~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~V~iWd~~~ 711 (737)
..+.. .| ..+..+.++| |+++|+++.. +++|.+|++..
T Consensus 267 ~~~~~--~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 267 EGHQP--TE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred eEEEe--cc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcC
Confidence 21111 11 1233789999 7888887664 89999998854
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.7e-15 Score=164.50 Aligned_cols=262 Identities=14% Similarity=0.189 Sum_probs=183.7
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcc--cccccceeeeeEEee
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQ 437 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~--~~g~~~~~~~~~l~~ 437 (737)
+.+.+|++... ...... +. -...|.|+.|+|.. .+++.|..+|.|.+||+..... +.+...
T Consensus 222 ~~~~vW~~~~p---~~Pe~~-~~---~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------- 285 (555)
T KOG1587|consen 222 GVLLVWSLKNP---NTPELV-LE---SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------- 285 (555)
T ss_pred ceEEEEecCCC---CCceEE-Ee---cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------
Confidence 37899999863 222222 33 36899999999954 5666667799999999986433 111100
Q ss_pred cCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCeEEEEECCCCcE-E-----EEec------CCCCCeEEEEE
Q 004683 438 PSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT-L-----ATFA------NPPPIATYFIL 500 (737)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~i~vwd~~~~~~-~-----~~~~------~~~~~v~~~~~ 500 (737)
....|..++..+.|. +.-+++++ ||.|..|+++.-.. . .... .....+++++|
T Consensus 286 ----------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 286 ----------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF 355 (555)
T ss_pred ----------ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEee
Confidence 011599999999998 44578887 99999998864322 1 1111 22346789999
Q ss_pred cCCC--eEEEEECCCeEEEEecCCCcE--------EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 501 LPQD--LFAFGFDDSSILVHCPCTKKT--------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 501 s~~~--~l~sgs~dg~I~vwd~~~~~~--------~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
.+.. .+++|+.+|.|..-+....+. ...+..|.++|.++.++|=+..++..+.|.+|++|..... .
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~ 431 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----A 431 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----C
Confidence 9988 999999999988744332221 2345568899999999997766665556999999987721 2
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCC--ceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.++..+ ..+. ..+++++|||....+++ . .+|.|.+||+... .++.+... +....+.+.|+++|+.|++|.
T Consensus 432 ~Pl~~~-~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 432 SPLLSL-DSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred Ccchhh-hhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEec
Confidence 333322 2222 56999999999865554 4 7899999998653 34444433 256677888999999999999
Q ss_pred cCCeEEEEEcCC
Q 004683 647 KSGHVKVFDTST 658 (737)
Q Consensus 647 ~dg~I~vwd~~~ 658 (737)
..|.+++|++..
T Consensus 506 ~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 506 ANGTTHILKLSE 517 (555)
T ss_pred CCCcEEEEEcCc
Confidence 999999999964
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.9e-16 Score=167.79 Aligned_cols=294 Identities=15% Similarity=0.146 Sum_probs=199.2
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CC
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GS 464 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~ 464 (737)
..-..+.|+|-.+.++++.....|+|||++.+...+|- + ++. .....|+.+.+- ..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F----------~--n~~--------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGF----------D--NGA--------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccc----------c--CCC--------CCCCccceeeeecccchh
Confidence 45677899999999999988889999998855431111 1 111 245678888887 45
Q ss_pred EEEEEe-CCeEEEEECC-C----CcEEEEecCC-------CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 465 HLFSAS-GGKISIFSLE-T----FQTLATFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~-~----~~~~~~~~~~-------~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
++++|+ ||.|+||+-- + .+.+..+.+- .+.-.-++|.... +|++++.-..|+|||.....++..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 788888 9999999742 2 2334333211 1111345777766 77777778899999998877766653
Q ss_pred -CCCcceEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCc
Q 004683 531 -GHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 606 (737)
Q Consensus 531 -~~~~~v~~l~~s-p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~ 606 (737)
+....|++++-+ +.|+.++.|..||.|++||.+....... +. ....|.. ..+|..+.+.+.|- .|++ +.+|.
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~--v~-~~R~h~~-~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL--VC-VYREHND-VEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc--ce-eecccCC-cccceeEEeecCCCcceeeeccCCe
Confidence 234556666553 3579999999999999999987443221 22 2334441 02389999998773 3666 69999
Q ss_pred EEEEeCCCCceeEEecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecc-cccCCCCccCceee
Q 004683 607 IDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQPGTISLELYP 682 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~~h---~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~~~g~~~~~v~~ 682 (737)
|++||++.......+....| ++..+++..+++...+|+|+. +.|.||++...+ +..+... .+. |...+. +
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs--~ 1354 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGS--V 1354 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCC--c
Confidence 99999987422211111111 335999999999999999998 999999987544 4433322 111 111222 3
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.|++||| ..-++|+|+.|.+|.||....++
T Consensus 1355 scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 5999999 78899999999999999887654
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-15 Score=168.21 Aligned_cols=250 Identities=13% Similarity=0.177 Sum_probs=168.6
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
|...|..++.+++. .+++|||.||+|++|+...-....|... +...|+. -.+.+.++... +
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r---S~ltys~-------------~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR---SELTYSP-------------EGSRVEKVTMCGNG 1110 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee---eeEEEec-------------cCCceEEEEeccCC
Confidence 78888888887654 9999999999999999875322111111 1112321 34567777766 8
Q ss_pred CEEEEEe-CCeEEEEECCCC-------cEEEEecCC--CCCeEEEEEcCCC---eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 464 SHLFSAS-GGKISIFSLETF-------QTLATFANP--PPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~-------~~~~~~~~~--~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
+.+|+++ ||.|.+.+++.. .+.+....+ ...|..-++.... .++.+..-+.|..||+++......++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 8888888 999999998752 122222222 2233333443332 67888889999999998766554443
Q ss_pred C--CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC---CEEEE-E--
Q 004683 531 G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I-- 602 (737)
Q Consensus 531 ~--~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~~-~-- 602 (737)
. ..+.|++++.+|.+.++++|+..|.+.+||++-+. ++..+..++. .++..+..+|-. ...++ +
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~-----~i~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV-----PILSWEHPAR---APIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCc-----eeecccCccc---CCcceEEeeccCCCCceEEEeccc
Confidence 2 35789999999999999999999999999999743 3332333333 678888877653 34444 3
Q ss_pred ecCcEEEEeCCCCceeEEecCC-C----------------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPD-K----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~-~----------------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
..+.|.+|++.+|.+..++... + +.-.....++...+.++.+|+.|..|+.||....+
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 5678999999998776665432 0 11112223333455789999999999999986543
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=147.85 Aligned_cols=264 Identities=14% Similarity=0.052 Sum_probs=180.2
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeee
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 432 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~ 432 (737)
++.+|..-|.|.+|++.+.. .... +.+. |+..|..+.--|++ .|.+-+.|..+.+|++.....
T Consensus 27 rL~sg~~~G~V~~w~lqt~r---~~~~--~r~~-g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~---------- 89 (323)
T KOG0322|consen 27 RLMSGLSVGIVKMWVLQTER---DLPL--IRLF-GRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAF---------- 89 (323)
T ss_pred hhhcccccceEEEEEeecCc---cchh--hhhh-ccceeeceeecCCc-chhhcCCCceEEEEEccCcce----------
Confidence 47888999999999998632 1111 2221 67889999998985 489999999999998763211
Q ss_pred eEEeecCCCeeeeeccCCCCCCCeEEEEEe-C----------CEEEEEeCC--eEEEEECCCCcEEEEec----CCCCCe
Q 004683 433 SQLYQPSSKLVMTNDIAADPKDSISCFALR-G----------SHLFSASGG--KISIFSLETFQTLATFA----NPPPIA 495 (737)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~----------~~l~s~sdg--~i~vwd~~~~~~~~~~~----~~~~~v 495 (737)
+. -|.-.++++.|. . ..++.-+.| .+.+-|......++... +..+.+
T Consensus 90 -----------i~-----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 90 -----------IS-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred -----------EE-----EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 00 122223333332 0 111111111 12222322222222221 334567
Q ss_pred EEEEEcCC-C---eEEEEECCCeEEEEecCCCcEE----------EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 496 TYFILLPQ-D---LFAFGFDDSSILVHCPCTKKTK----------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 496 ~~~~~s~~-~---~l~sgs~dg~I~vwd~~~~~~~----------~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
.|..+..+ + .+++|.++|.|.+||+.++..+ .....|..+|.++.+.+....=++|+.+..+..|.
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 77775443 3 6789999999999999988433 23345889999999998777778889899999998
Q ss_pred CCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCC
Q 004683 562 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 640 (737)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 640 (737)
++........... +...+ ..|..+.+-||++.+|+ |.|++|+||+.++..++..++- |...|.+++|+|+..
T Consensus 234 l~~s~gslq~~~e-~~lkn----pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 234 LNHSTGSLQIRKE-ITLKN----PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCE 306 (323)
T ss_pred eccccCcccccce-EEecC----CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh--hhcceeEEEeCCCCc
Confidence 8753110000000 11111 46888999999999998 7999999999999999998875 689999999999999
Q ss_pred EEEEEecCCeEEEEEc
Q 004683 641 CIYVSCKSGHVKVFDT 656 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~ 656 (737)
.+|++|.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=4.8e-17 Score=173.80 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=207.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 386 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 386 ~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
||...|+|+.|...|.++++|++|..++||.+.+.. +..... ||.+.|+.++.+ +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------~lAs~r--Ghs~ditdlavs~~n 244 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------CLASCR--GHSGDITDLAVSSNN 244 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------hhccCC--CCccccchhccchhh
Confidence 399999999999999999999999999999876432 222222 899999999999 5
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE----c-CCCcceE
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL----K-GHQNRIT 537 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l----~-~~~~~v~ 537 (737)
..+++++ |..|++|.+.++..+..+.+|.+.|++++|+|- .+.+.||++++||.+ -..+... + .....+.
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEecccc-ccccccCCCCCCccccccee
Confidence 5677777 899999999999999999999999999999994 577889999999987 1111111 0 1234567
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEEE-ecCcEEEEeCCCC
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTL 615 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~-~dg~I~iwd~~~~ 615 (737)
++.|..++..+++++.|+.-..|.+..- ..+. ..+.-+..+.+-. +.+++ .+-.+++|++.+|
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------------~~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQL------------AWRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHh------------hhhc---cceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 7788888889999999999888876541 1111 1222233333333 33344 6788999999999
Q ss_pred ceeEEecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 616 NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
...+...+ |...+..+.++|- .....+++.||...|||+..|.++..+.. || .. ....+|++ ||..
T Consensus 386 ~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------gh-~k---l~d~kFSq-dgts 452 (1113)
T KOG0644|consen 386 QLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------GH-GK---LVDGKFSQ-DGTS 452 (1113)
T ss_pred hhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------cc-ce---eeccccCC-CCce
Confidence 88887765 6888999999994 45556899999999999999988777652 32 22 33788999 8988
Q ss_pred EEEEECCCcEEEEecCCCc
Q 004683 695 IALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 695 las~s~Dg~V~iWd~~~~~ 713 (737)
++...+-|.+.|.....++
T Consensus 453 ~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 453 IALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred EecCCCCCceEEeccCCCc
Confidence 9888888999998776554
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1e-14 Score=143.55 Aligned_cols=218 Identities=13% Similarity=0.212 Sum_probs=158.5
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc-----ccccccee----------e------eeEEeecCCCeeeee
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVN----------M------ESQLYQPSSKLVMTN 446 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~-----~~g~~~~~----------~------~~~l~~~~~~~~~~~ 446 (737)
...+..+.|+.|+..|..|+.||. ++++...... ..|..+.. + ..++++.+.+..+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 445677778888888888877764 5666544322 01111100 0 124445444444443
Q ss_pred ccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCC-eEEEE--ECCCeEEEEec
Q 004683 447 DIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFG--FDDSSILVHCP 520 (737)
Q Consensus 447 ~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~sg--s~dg~I~vwd~ 520 (737)
.. ...+|.+|.++-+.|+++-.+.|+|||+.+.+.+.++. .+..++.++++++.+ +++-- ...|.|.+||.
T Consensus 84 ~~---fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IF---FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred Ee---cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 33 45778888888666666666669999999999998886 344557777777777 77643 34689999999
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~-I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.+-+.+..+..|.+.+-+++|+++|.++|++|..|+ |||+.+.+++. +..+..|-.+ ..|.+++|+|++.+|
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-----l~eFRRG~~~--~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-----LYEFRRGTYP--VSIYSLSFSPDSQFL 233 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-----eeeeeCCcee--eEEEEEEECCCCCeE
Confidence 999999999999999999999999999999999997 79999988643 3335555443 689999999999999
Q ss_pred EE-EecCcEEEEeCCCCc
Q 004683 600 LS-IHEGQIDVYEAPTLN 616 (737)
Q Consensus 600 ~~-~~dg~I~iwd~~~~~ 616 (737)
++ |..++|++|.++...
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 98 578999999987543
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=148.84 Aligned_cols=275 Identities=8% Similarity=0.083 Sum_probs=184.2
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp--dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
..+|++-+.|.|++||..+ +..... +.+ |...+..+.|.. .+..+.+|+.||+|++||++.... .+
T Consensus 41 ~~vav~lSngsv~lyd~~t----g~~l~~-fk~--~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----GQLLEE-FKG--PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SA 108 (376)
T ss_pred eeEEEEecCCeEEEEeccc----hhhhhe-ecC--CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hh
Confidence 5688999999999999885 222222 444 778888899977 456789999999999999885332 10
Q ss_pred eeeeEEeecCCCeeeeeccCCCCC-CCeEEEEEe--CCEEEEEe-----CCeEEEEECCCCcE-EEEe-cCCCCCeEEEE
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFI 499 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~-~~V~~v~~s--~~~l~s~s-----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~ 499 (737)
. ..|. ++. .+..|++.. ++.+++|. +-.|.+||++..+. ++.+ ..|...|+++.
T Consensus 109 ~---~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 109 R---ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred h---eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 0 0111 233 466677776 66777765 35799999987665 6655 48999999999
Q ss_pred EcCCC--eEEEEECCCeEEEEecCCCc----EEEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeecee
Q 004683 500 LLPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 500 ~s~~~--~l~sgs~dg~I~vwd~~~~~----~~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~ 572 (737)
|+|.. +|++||.||-|.+||+.... ...++ .|.+.|.++.|..++ +.+.+-+...+..+|+++.+.......
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 99998 99999999999999987542 12333 367789999998877 458888899999999998865322211
Q ss_pred eeecccCCC--C-CCCCeEEEEEecCC-CEEEE-Ee-cCcEEEEeC---CCC---ceeEEecCCCCCCCeEEEEEccCCC
Q 004683 573 LHSFQTGLV--P-ETTIVNHIQFHPDQ-IHLLS-IH-EGQIDVYEA---PTL---NHTSQLVPDKMDLPITYATYSCDGK 640 (737)
Q Consensus 573 ~~~~~~~~~--~-~~~~v~~l~~sp~g-~~l~~-~~-dg~I~iwd~---~~~---~~~~~~~~~~h~~~v~~~~~sp~~~ 640 (737)
...+..... . .-..+... .+|.+ ...+. +. .+...++-+ .++ +.+..+.+ +|..-|+++.|...+.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKND 329 (376)
T ss_pred CccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccc
Confidence 110100000 0 00111111 22332 33333 33 344444433 232 33444443 3677889999998999
Q ss_pred EEEEEecCCeEEEEEcC
Q 004683 641 CIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~~ 657 (737)
++++|++||.+.+|...
T Consensus 330 ~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeeccCCCceEEEEecC
Confidence 99999999999999963
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=3.4e-16 Score=146.88 Aligned_cols=243 Identities=13% Similarity=0.160 Sum_probs=177.1
Q ss_pred CCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEE
Q 004683 451 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 451 ~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
+|.+.|+++.|. +.+|++|. .|.|++|++.+......++ .+...|+.+...|++.+.+-+.|+.+.+|++.-+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 689999999999 77899998 8999999999988888888 56678888888887788888999999999986432110
Q ss_pred --------------EE---------------------------------------cCCCcceEEEEEeC-CCC--EEEEE
Q 004683 528 --------------KL---------------------------------------KGHQNRITCLAYSL-SLN--VLVSS 551 (737)
Q Consensus 528 --------------~l---------------------------------------~~~~~~v~~l~~sp-~g~--~l~s~ 551 (737)
.+ .+..+.+.|..+.. +++ .++.|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 00 00112344444322 222 36677
Q ss_pred eCCCcEEEEeCCCCceeece----eeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC--cee--EEec
Q 004683 552 GADAQLCVWDAVGWKKLCSK----FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHT--SQLV 622 (737)
Q Consensus 552 s~dg~I~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~--~~~--~~~~ 622 (737)
-.+|.|.+||+.++...-.. .+..-...|. .+|.++.+.+.-..=++ |.+..+..|++... .+. ....
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 88999999999986322111 0111123344 68999999876544444 46677888887632 221 1111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 623 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 623 ~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
. ....|..+.+-||++.+|+++.|+.||||+.++.+++..+..| .+.++ +++|+| +..++|+++.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence 1 1445788899999999999999999999999999999999865 45566 999999 789999999999
Q ss_pred cEEEEec
Q 004683 703 RVHVIEP 709 (737)
Q Consensus 703 ~V~iWd~ 709 (737)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.6e-14 Score=152.16 Aligned_cols=332 Identities=9% Similarity=0.081 Sum_probs=218.0
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..+.|......- +-.+.+|+..... ...+..- .. .-|+..++|+++||+++++|+|..||.|.+|.--..
T Consensus 168 ~~~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~-~~-~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------ 237 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRD-IT-VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------ 237 (792)
T ss_pred EcCCceEEEEEE-eeeEEEEEecccc-eeeccch-hh-hhhcccceeEEeccccceEEEeccCCcEEEEecccc------
Confidence 455555544443 4456788877421 0111110 00 127788999999999999999999999999973320
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 503 (737)
...+. +..+.+ =|.+.|.+++|+ |.+|++|+ .|.+.+|.+.+++ .+-+..-.+.|..+.++||
T Consensus 238 ~~~~~--------t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d 303 (792)
T KOG1963|consen 238 SDDSE--------TCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD 303 (792)
T ss_pred ccccc--------cceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC
Confidence 11111 111222 278899999999 99999999 8999999999988 4444566778999999999
Q ss_pred C-eEEEEECCCeEEEEecCCCcEEEEEcC-----------CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004683 504 D-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 504 ~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-----------~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
+ ..+....|..|.+....+.....++.+ ..+-.+.+.++|.-+.++..+..|.|.+||+-+.+.+...
T Consensus 304 s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 304 SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence 9 888888899999988765544333332 2344677889997788899999999999999885544322
Q ss_pred eeeecccCCCC----CCCCeEEEEEecCCCEEEEE---------ecC--cEEEEeCCCCc---eeEEecCCCCCCCeEEE
Q 004683 572 FLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI---------HEG--QIDVYEAPTLN---HTSQLVPDKMDLPITYA 633 (737)
Q Consensus 572 ~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~~~---------~dg--~I~iwd~~~~~---~~~~~~~~~h~~~v~~~ 633 (737)
.+. ...+.+ ..-.++.++.+..|.++++. .|| .++.|-..... .+.+....+|...+...
T Consensus 384 ~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat 461 (792)
T KOG1963|consen 384 QVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVAT 461 (792)
T ss_pred EEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEE
Confidence 111 111111 11357778888889999973 122 47888765332 22222223466666666
Q ss_pred EEcc-CC-CEEEEEecCCeEEEEEcCCC------eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEE
Q 004683 634 TYSC-DG-KCIYVSCKSGHVKVFDTSTL------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 705 (737)
Q Consensus 634 ~~sp-~~-~~l~sgs~dg~I~vwd~~~~------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~ 705 (737)
++.+ .. ...++++.||.++||-+... ...+..... |+ -+...+++.+|+. ||..|+. +.|++|.
T Consensus 462 ~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-----~s-y~k~~i~a~~fs~-dGslla~-s~~~~It 533 (792)
T KOG1963|consen 462 IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-----GS-YHKTPITALCFSQ-DGSLLAV-SFDDTIT 533 (792)
T ss_pred EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----ec-cccCcccchhhcC-CCcEEEE-ecCCEEE
Confidence 6653 33 37889999999999998432 222222211 11 1112244899998 8865555 5788999
Q ss_pred EEecCCC
Q 004683 706 VIEPLES 712 (737)
Q Consensus 706 iWd~~~~ 712 (737)
|||..+.
T Consensus 534 iwd~~~~ 540 (792)
T KOG1963|consen 534 IWDYDTK 540 (792)
T ss_pred EecCCCh
Confidence 9999883
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=4.7e-14 Score=138.87 Aligned_cols=240 Identities=15% Similarity=0.175 Sum_probs=172.0
Q ss_pred CCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEEC--CCeEEEEecCCCcEEE
Q 004683 452 PKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD--DSSILVHCPCTKKTKA 527 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~--dg~I~vwd~~~~~~~~ 527 (737)
....+..+.|+ ...|..|+..--++|+................|--+-|+.. .+|..+. -+.+++++++.+..+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEE
Confidence 34556677788 44555555444567776654332222222233444555544 3443333 3469999999888887
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E--ec
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HE 604 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~--~d 604 (737)
.+. ...+|.++.++. +.|+++-.+ .|+|||+++ .+.++++..... +...+..+++++.+.+++- + ..
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~-----MklLhTI~t~~~-n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKD-----MKLLHTIETTPP-NPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEeccc-----ceeehhhhccCC-CccceEeeccCCCCceEEecCCCCC
Confidence 776 467899998875 345555544 499999998 344554433211 0145666777777779997 3 66
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEEcCCCeeEEEEecccccCCCCccCceeeE
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~-I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
|.|.+||+.+-+++..+.. |.+.+.+++|+++|.+||++|+.|+ |||+.+.+|+.+..+.. | ...+.+.
T Consensus 153 GdV~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G--~~~~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------G--TYPVSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------C--ceeeEEE
Confidence 9999999999999988864 8999999999999999999999987 69999999999998864 3 2245666
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+++|+| ++.+|++.|..++|+||.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 89999999999999999998654
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=154.00 Aligned_cols=206 Identities=11% Similarity=0.118 Sum_probs=153.1
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
.++.++ ||.+.+.+- .++.-+.+..|.+.+.|-.|+||| -+++++.||.|++|. ++|-...++.....+|.|++|.
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 455555 999999874 477778888999999999999999 999999999999998 5565555555567899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
|+.+.++.+. .+.+.+=-+... ..+++ -..|. +-|.++.|+|....+++ |.|-..++||. .|..+..-
T Consensus 155 p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S 223 (737)
T KOG1524|consen 155 PNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS 223 (737)
T ss_pred CCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeecc-cCcccccC
Confidence 9887766554 345555444432 24444 34565 78999999999999999 58999999998 46655444
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
. .|..+|++++|.|+ ...+.+|. ++++ +... ..+.+ ..++||| ||..+++|+..
T Consensus 224 ~--~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p-------~~GSi--fnlsWS~-DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 224 A--AEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-------RVGSI--FNLSWSA-DGTQATCGTST 277 (737)
T ss_pred C--hhccceeeeeeccc-cceeeeee-eeee------------ecCC-------Cccce--EEEEEcC-CCceeeccccC
Confidence 3 47899999999999 55555543 3344 1110 02224 4999999 89999999999
Q ss_pred CcEEEEec
Q 004683 702 GRVHVIEP 709 (737)
Q Consensus 702 g~V~iWd~ 709 (737)
|.|.+=.+
T Consensus 278 G~v~~A~~ 285 (737)
T KOG1524|consen 278 GQLIVAYA 285 (737)
T ss_pred ceEEEeee
Confidence 98776444
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=2.2e-15 Score=156.55 Aligned_cols=238 Identities=16% Similarity=0.135 Sum_probs=170.7
Q ss_pred EecCCCEEEE--EECCCcEEEeeccCCcc-cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEE
Q 004683 396 YSHSGDFLVA--LTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA 469 (737)
Q Consensus 396 fspdg~~L~s--~s~dg~i~iWd~~~~~~-~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~ 469 (737)
|+.+..++|. +|.-|.|-|+++..... ++|....- -....|+.+.|. ...|+++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l--------------------~Ngt~vtDl~WdPFD~~rLAVa 646 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL--------------------FNGTLVTDLHWDPFDDERLAVA 646 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc--------------------ccCceeeecccCCCChHHeeec
Confidence 3334444443 45568999999875332 33322211 145678999999 6778888
Q ss_pred e-CCeEEEEECCCC-------cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 470 S-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 470 s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
+ ||.|++|.+..+ .....+..|...|+++.|+|-. .|++++.|.+|++||+.+++....+.+|++.|..+
T Consensus 647 ~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~ 726 (1012)
T KOG1445|consen 647 TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI 726 (1012)
T ss_pred ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEE
Confidence 8 899999998654 3456778999999999999977 89999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E----ecCcEEEEeCCC
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQIDVYEAPT 614 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~----~dg~I~iwd~~~ 614 (737)
+|+|+|+.+++.+.||+|++|..++++ .+++ ++..+-...--.+.|.-+|+++++ | +...|.+||.++
T Consensus 727 AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 999999999999999999999998753 2332 222110033446788889999887 5 345799999875
Q ss_pred C--ceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCee
Q 004683 615 L--NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 615 ~--~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~~~ 661 (737)
- .++.+.... ....+.--.+.+|.. ++++|-.|..|++|.+-...+
T Consensus 800 l~~~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 800 LDLRPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ccCCcceeeeec-ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 3 344333211 111222223445555 456788899999999876554
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.9e-15 Score=144.01 Aligned_cols=293 Identities=10% Similarity=0.040 Sum_probs=204.5
Q ss_pred eeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 004683 335 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 414 (737)
Q Consensus 335 l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~i 414 (737)
+....+|..+..|+.+|++||+|+.|..+++|+++..-.......+.+.++-|.+.|.|++|....+++.+|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 33445667777799999999999999999999987532223333344556658899999999999999999999999988
Q ss_pred eeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc-EEE--Ee
Q 004683 415 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLA--TF 488 (737)
Q Consensus 415 Wd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~-~~~--~~ 488 (737)
-|+.+.+. +.........+.|+.+..+ ++.|++.+ ++.|.+||..... ... ..
T Consensus 132 HDiEt~qs---------------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 132 HDIETKQS---------------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred eeccccee---------------------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 87764321 1111111234589988888 88888888 8999999987643 221 22
Q ss_pred cCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcE-EE---EEcCC---CcceEEEEEeCCCCEEEEEeCCCcEEE
Q 004683 489 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KA---KLKGH---QNRITCLAYSLSLNVLVSSGADAQLCV 559 (737)
Q Consensus 489 ~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~-~~---~l~~~---~~~v~~l~~sp~g~~l~s~s~dg~I~l 559 (737)
........++.|+|.. +|++.+..+-+.+||++..+. +. .+.+. ...-.++.|+|+|+.+.+--....-.+
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 2334467788999988 889999999999999875432 11 11221 222367889999999887766666667
Q ss_pred EeCCCCceeeceeeeecccCCCC----CCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC----------c--------
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----------N-------- 616 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~----------~-------- 616 (737)
||+-+..+ .. +...|.+ ....+.+++|.-+.. +++| .+-.|++|.+... .
T Consensus 271 ~D~~S~R~-----~V-~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 271 FDFISQRC-----FV-LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred eeeecccc-----ee-EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 88876221 11 2222221 124577788876654 6665 5568999987521 1
Q ss_pred -----eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 617 -----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 617 -----~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
.+..+. +|..-+..+.|+|...+|++.+-...+++|.-.
T Consensus 344 ~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 122333 378889999999999999999999999999754
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=170.73 Aligned_cols=234 Identities=21% Similarity=0.278 Sum_probs=184.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
+|-+.|.|+.|. |.++++|+ |..|+||..+++.++....||.+.|+.++.+.++ ++++++.|..|++|.+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 7999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec--eeeeecccCCCCCCCCeEEEEEecCCCEEEE-Ee
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 603 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~ 603 (737)
..+.+|++.|++++|+|-. +.+.||++++||.+- ..... .++. +..+ .-+.++.|..++..+++ +.
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~-~~~~-----~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK-FTEK-----DLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC-cccc-----cceeeeeccccccccccccC
Confidence 9999999999999999954 778899999999982 11111 1111 1111 45777888888888887 47
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceee
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
|+.-..|....... +...+.-+.++.+ ..+.+++-.+..+.+|++.+|.+.+.+.+| ...++
T Consensus 337 d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--------sd~~y- 399 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--------SDEVY- 399 (1113)
T ss_pred CcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--------cccee-
Confidence 78777776542211 1111112222222 256677778899999999999988877543 55566
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.+.+||-+..+..+++.||...|||+..+-
T Consensus 400 -vLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 400 -VLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -eeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 789999777777899999999999998774
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=136.73 Aligned_cols=265 Identities=12% Similarity=0.098 Sum_probs=183.1
Q ss_pred CCEEEEEec----CCeEEEeecCccCCCCceeee-ecCCCCCCCCeEEEEEecCCC-----EEEEEECCCcEEEeeccCC
Q 004683 351 ADSAVCAKS----LEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGD-----FLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 351 g~~la~~s~----dg~v~iW~~~~~~~~~~~~~~-~l~~~~h~~~V~~v~fspdg~-----~L~s~s~dg~i~iWd~~~~ 420 (737)
+.++|.|+. .+.|.|-.++.. .++.... .++ |.-+++.+.|.|+.. .|||++ ..+++|.+...
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~--s~e~~~~a~fd---~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~e 131 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDED--SGELVEDANFD---HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDE 131 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccC--CCceeccCCCC---CCCCccceEecCCccccCcchhhccc--CeEEEEeccCc
Confidence 446777764 455666666532 2332221 122 889999999999873 456554 47999987742
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCc---EEEEecCCCC
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---TLATFANPPP 493 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~---~~~~~~~~~~ 493 (737)
+. .... ..++.......+..++++..|+ .+++.+++ |-+..|||++++. ....+-+|+.
T Consensus 132 e~---~~~~-----------~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 132 ES---RVEL-----------QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred CC---ceeh-----------hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 21 0000 0001111112477899999999 77888888 9999999999863 3556679999
Q ss_pred CeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc-C--CCcceEEEEEeC-CCCEEEEEeCC-CcEEEEeCCCCc
Q 004683 494 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-G--HQNRITCLAYSL-SLNVLVSSGAD-AQLCVWDAVGWK 566 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~-~--~~~~v~~l~~sp-~g~~l~s~s~d-g~I~lwdl~~~~ 566 (737)
.|..++|...+ .||+.+.||.|++||++.......+- . ...+...++|++ |-+++|+-..| ..|.+.|++..
T Consensus 198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P- 276 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP- 276 (364)
T ss_pred ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-
Confidence 99999999987 99999999999999999765443332 1 245777889987 45677776665 46889999873
Q ss_pred eeeceeeeecccCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEEeCCCCc------eeEEecCCCCCCCeEEEEEcc-
Q 004683 567 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLN------HTSQLVPDKMDLPITYATYSC- 637 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iwd~~~~~------~~~~~~~~~h~~~v~~~~~sp- 637 (737)
..++. -..+|. +.|+.++|.|.. ..+++ |.|..+.+||+...- ++..+.. .+.|..+.|++
T Consensus 277 ---~tpva-~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a---~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 277 ---CTPVA-RLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA---GGEVNQIQWSSS 346 (364)
T ss_pred ---Cccee-hhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc---cceeeeeeeccc
Confidence 23333 245666 899999999986 56666 578899999997522 2333332 67899999996
Q ss_pred CCCEEEEEec
Q 004683 638 DGKCIYVSCK 647 (737)
Q Consensus 638 ~~~~l~sgs~ 647 (737)
.+.+++.+..
T Consensus 347 ~~Dwiai~~~ 356 (364)
T KOG0290|consen 347 QPDWIAICFG 356 (364)
T ss_pred CCCEEEEEec
Confidence 6678887754
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=3.9e-14 Score=154.05 Aligned_cols=243 Identities=13% Similarity=0.088 Sum_probs=172.0
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcE--EEE----ecCCCCCeEEEEEcCCC---eEEEEECCCeEEEE
Q 004683 452 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LAT----FANPPPIATYFILLPQD---LFAFGFDDSSILVH 518 (737)
Q Consensus 452 h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~--~~~----~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vw 518 (737)
-...|.|+.|+ .++++.|. +|.|.+||+..+.. ... ...|...++.+.|..+- -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 56889999999 66777777 89999999987654 222 23788899999997765 59999999999999
Q ss_pred ecCCCcE-E-----EEEc------CCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceee---ceeeeecccCCCC
Q 004683 519 CPCTKKT-K-----AKLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVP 582 (737)
Q Consensus 519 d~~~~~~-~-----~~l~------~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~---~~~~~~~~~~~~~ 582 (737)
+++.-.. . .... .....+++++|.+ +-..+++|+.+|.|.-=+....+... .+... ....|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~- 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI- 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence 8774322 1 1111 1234678899988 45679999999998773333211111 01111 122233
Q ss_pred CCCCeEEEEEecCCCEEE-EEecCcEEEEeCC-CCceeEEecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCC
Q 004683 583 ETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~-~~~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~sgs~dg~I~vwd~~~~ 659 (737)
++|.++.++|-+..++ ++.|.+++||... ...++..+.. +...+++++|||.. ..++++..||.|.+||+...
T Consensus 399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 8999999999885554 4679999999987 5666665543 46679999999965 56677888999999998754
Q ss_pred ee--EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 660 EL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 660 ~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
.. +...... ... ...+.|++ .+..|++|+..|++.+|++..
T Consensus 475 ~~~Pv~s~~~~--------~~~--l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 475 DEEPVLSQKVC--------SPA--LTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccCCccccccc--------ccc--cceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 33 3322211 111 23788888 799999999999999999964
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=152.81 Aligned_cols=205 Identities=15% Similarity=0.170 Sum_probs=158.8
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
....++.+++||.+.|-+-.. ..... ... |.+.|.+-.|+|||.-|+++|.||.|++|.-.
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~-----rVE~s-v~A--H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------- 134 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSA-----RVERS-ISA--HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------- 134 (737)
T ss_pred CcceEEEEcCCceEEEecccc-----hhhhh-hhh--hhhhhhhcccCCCCceeeeecCCceEEEEecc-----------
Confidence 345788899999998877542 22221 333 99999999999999999999999999999743
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 506 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l 506 (737)
|.+..++. ....+|.|++|. .+.++.|..+.+.+=.+.....+-.++.|++-|.++.|++.+ .+
T Consensus 135 -----------GMLRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 135 -----------GMLRSTVV--QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred -----------chHHHHHh--hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 22222222 367889999999 666666667788887777777778889999999999999999 99
Q ss_pred EEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC
Q 004683 507 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 507 ~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
++|+.|-..++||-. |+.+..-..|..+|++++|+|+ +.++.+|. ++.| +..... +.
T Consensus 202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R-----------------~~~p~~---GS 258 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR-----------------FSSPRV---GS 258 (737)
T ss_pred eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee-----------------ecCCCc---cc
Confidence 999999999999965 6777777789999999999999 56665553 2333 111122 78
Q ss_pred eEEEEEecCCCEEEEE-ecCcEEE
Q 004683 587 VNHIQFHPDQIHLLSI-HEGQIDV 609 (737)
Q Consensus 587 v~~l~~sp~g~~l~~~-~dg~I~i 609 (737)
|..++||+||..++++ ..|.+.+
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEE
Confidence 9999999999999985 6676544
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=4.6e-14 Score=136.43 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=193.5
Q ss_pred cccCCCCCEEEEE-ecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEeeccCCcc
Q 004683 345 STSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQ 422 (737)
Q Consensus 345 ~~~spdg~~la~~-s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s-~dg~i~iWd~~~~~~ 422 (737)
.++..|.-++..+ ..|+.|.+|++.. +.-.-.+ -. -..++.+++|||||+.++..+ .|-.|.||.+.+..
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Q---pew~ckI-de---g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~- 125 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQ---PEWYCKI-DE---GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK- 125 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeec---ceeEEEe-cc---CCCcceeeeECCCcceEeeeecceeEEEEEEeccce-
Confidence 3477888777765 5688999999985 2222221 22 378999999999997666554 58899999876432
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--C--CeEEEEECCCCcEEEEecCCCCCeE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIAT 496 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~ 496 (737)
+..++ .....+..++|+ |++.+.++ | ..+.+........++.+.-..-..+
T Consensus 126 ------------------~~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 126 ------------------GYLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred ------------------eEEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 22222 244556778888 77777776 3 2333433333444555555555667
Q ss_pred EEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee------
Q 004683 497 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC------ 569 (737)
Q Consensus 497 ~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~------ 569 (737)
.+.|+||| .+++ ||.--.-.+..+. -.-.+..++|+|.++++++|+.|+.+|+.+--+++...
T Consensus 183 gieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 183 GIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred CceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 78888887 5554 3311111111111 12356778888888888888888887774432221100
Q ss_pred -------------------------------------------------ceeeeecc--cCCCCCCCCeEEEEEecCCCE
Q 004683 570 -------------------------------------------------SKFLHSFQ--TGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 570 -------------------------------------------------~~~~~~~~--~~~~~~~~~v~~l~~sp~g~~ 598 (737)
...++.+. ....++--.+.-++|++|..+
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y 332 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY 332 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence 00000000 000001135667999999999
Q ss_pred EEEEe---cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCC
Q 004683 599 LLSIH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 675 (737)
Q Consensus 599 l~~~~---dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~ 675 (737)
+++-. -+.+.+||+++.+....+. +..+|....|.|....|+.+.....+++|.......+..-
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP---------- 399 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP---------- 399 (447)
T ss_pred EeeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC----------
Confidence 99843 3679999998877655553 3678999999999888888777788999998875555442
Q ss_pred ccCceeeEEEEEccCCCCEEEEEECCCc
Q 004683 676 ISLELYPLVIAAHPLEPNRIALGLTNGR 703 (737)
Q Consensus 676 ~~~~v~~~~v~~sp~d~~~las~s~Dg~ 703 (737)
..+.++..+.|+- +|..++.++.|..
T Consensus 400 -~~GF~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 -KKGFNIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred -CCCceeeeEEecC-CCcEEEEEcCCce
Confidence 2225566999998 7999999998863
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=7.2e-13 Score=140.46 Aligned_cols=325 Identities=14% Similarity=0.133 Sum_probs=197.0
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeee
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 433 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~ 433 (737)
+++-..+|.|.+.|..+ .+.... ++. ....-..+.|+|||+++++++.||.|.++|+.+.
T Consensus 9 ~V~~~~~~~v~viD~~t----~~~~~~-i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~------------- 68 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT----NKVVAR-IPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG------------- 68 (369)
T ss_dssp EEEEGGGTEEEEEETTT-----SEEEE-EE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-------------
T ss_pred EEEecCCCEEEEEECCC----CeEEEE-EcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-------------
Confidence 45667789999999874 333332 332 2223345789999999999999999988887643
Q ss_pred EEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecC-------CCCCeEEEEEcC
Q 004683 434 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-------PPPIATYFILLP 502 (737)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~ 502 (737)
+++.... -.....+++++ |++++++. .+.+.++|..+.+.++.+.. ...++..+..+|
T Consensus 69 --------~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 69 --------KVVATIK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp --------SEEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred --------cEEEEEe---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 2222222 23446678898 89998887 79999999999999988753 234677888888
Q ss_pred CC-eEEEEEC-CCeEEEEecCCCcEEE-EEcCCCcceEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeccc
Q 004683 503 QD-LFAFGFD-DSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 503 ~~-~l~sgs~-dg~I~vwd~~~~~~~~-~l~~~~~~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
.. .++..-. .+.|.+.|....+.+. .............|+|++++++.+ ..++.|-++|..++..... +..
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-----i~~ 212 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-----IDT 212 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-----EE-
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-----eec
Confidence 88 5655555 4789998977654332 222234567789999999987664 4567899999988544322 122
Q ss_pred CCCCCCCCeEEE-------EEec--CCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE---
Q 004683 579 GLVPETTIVNHI-------QFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--- 645 (737)
Q Consensus 579 ~~~~~~~~v~~l-------~~sp--~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg--- 645 (737)
+..++..+...+ .|.. .+...++ -..+.+.+||..+.+.++++... ... ..+.-+|+++++.+.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccC
Confidence 222111222222 1221 2223322 24456678999999999999763 334 677889999999987
Q ss_pred -ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE--ECCCcEEEEecCCCceeeeecCCC
Q 004683 646 -CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG--LTNGRVHVIEPLESEVEWGKLPFT 722 (737)
Q Consensus 646 -s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~--s~Dg~V~iWd~~~~~~~w~~~~~~ 722 (737)
...++|.++|..+.+....+... ....+..+.|++ ||..+..+ ..+|.|.|||..+.+.+-..+-..
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE--S
T ss_pred CCCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeC
Confidence 44589999999999877776531 122255899999 77754333 333489999999998777766554
Q ss_pred CCCCc
Q 004683 723 DSREF 727 (737)
Q Consensus 723 ~~g~~ 727 (737)
..|.+
T Consensus 360 P~G~f 364 (369)
T PF02239_consen 360 PTGKF 364 (369)
T ss_dssp EEEEE
T ss_pred CCeEe
Confidence 55544
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.9e-14 Score=154.29 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=152.7
Q ss_pred CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecC
Q 004683 360 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 439 (737)
Q Consensus 360 dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~ 439 (737)
+..|.+||.++. ..+. +.. |...+.+.+|||||++|+.++.++.
T Consensus 183 ~~~i~i~d~dg~----~~~~--lt~--~~~~v~~p~wSPDG~~la~~s~~~~---------------------------- 226 (429)
T PRK01742 183 PYEVRVADYDGF----NQFI--VNR--SSQPLMSPAWSPDGSKLAYVSFENK---------------------------- 226 (429)
T ss_pred eEEEEEECCCCC----CceE--ecc--CCCccccceEcCCCCEEEEEEecCC----------------------------
Confidence 357899998742 2222 333 6778999999999999998875321
Q ss_pred CCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEEE-CCCeE
Q 004683 440 SKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSI 515 (737)
Q Consensus 440 ~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~I 515 (737)
+..|++||+.+++. +..+.++ ...++|+||| .|+.++ .+|.+
T Consensus 227 -------------------------------~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 227 -------------------------------KSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred -------------------------------CcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 11233444433322 2222233 2357999999 777654 67755
Q ss_pred --EEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 516 --LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 516 --~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
++||+.++.. ..+..+...+.+..|+|||+.++.++ .+|...+|++..... ... .. .+. . .+..|
T Consensus 273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~~~ 340 (429)
T PRK01742 273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSAQI 340 (429)
T ss_pred EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCccC
Confidence 4557766654 45666677788999999999877655 578888887654211 111 11 221 2 45789
Q ss_pred ecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC--CCeeEEEEecccc
Q 004683 593 HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS--TLELRCQINLTAY 670 (737)
Q Consensus 593 sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~--~~~~~~~~~~~~~ 670 (737)
+|+|++++......+.+||+.+++....... ....++.|+|||++|+.++.+|.+.+|++. +|+....+..+
T Consensus 341 SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~-- 414 (429)
T PRK01742 341 SADGKTLVMINGDNVVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS-- 414 (429)
T ss_pred CCCCCEEEEEcCCCEEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC--
Confidence 9999999885445677799988876432211 123567899999999999999988888763 57767766532
Q ss_pred cCCCCccCceeeEEEEEcc
Q 004683 671 AQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp 689 (737)
.+.+. .++|+|
T Consensus 415 ------~g~~~--~p~wsp 425 (429)
T PRK01742 415 ------DGQVK--FPAWSP 425 (429)
T ss_pred ------CCCCC--CcccCC
Confidence 33344 789998
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.8e-14 Score=143.74 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=202.1
Q ss_pred ccccCCCCCEEE-EEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 344 ESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 344 ~~~~spdg~~la-~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.+..+|||+++. +|..-..|++||+... .-. +..|.-...|...-.|-|=..++.-..|.+|.+-.
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanL--SLK-----FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa------ 122 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANL--SLK-----FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA------ 122 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccc--eee-----eeecccccceeEEEeccchhhheEeecCceeeehh------
Confidence 344899999875 5667788999999852 111 33322345666666677766667777787775432
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
..|...... -...-..++++ ..+++.|+...|+-++++.|..+..+....+.++++.
T Consensus 123 ----------------k~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 123 ----------------KYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred ----------------hcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 222211111 11222345555 4555556688999999999999999988889999999
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC------CCc-----ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~------~~~-----~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
.++.. +|++|+.+|.|..||.++...+.++.. |.+ .|+++.|+.+|-.+++|+.+|.|.+||+++
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa--- 259 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA--- 259 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc---
Confidence 99998 999999999999999998776665532 333 399999999999999999999999999998
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecC--CCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
..++..-..+.. .+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++.+++++
T Consensus 260 --~~pl~~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 260 --SKPLLVKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred --CCceeecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEe
Confidence 344431222222 68899999876 4556666778899999999999888865 5669999999999999999
Q ss_pred ecCCeEEEEEcCCCee
Q 004683 646 CKSGHVKVFDTSTLEL 661 (737)
Q Consensus 646 s~dg~I~vwd~~~~~~ 661 (737)
-+++.+..|-+..--+
T Consensus 332 ne~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 332 NESSKMHTYYIPSLGP 347 (703)
T ss_pred cCCCcceeEEccccCC
Confidence 9999888887765433
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=7.6e-14 Score=134.96 Aligned_cols=271 Identities=14% Similarity=0.160 Sum_probs=183.2
Q ss_pred EEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004683 393 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 470 (737)
Q Consensus 393 ~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 470 (737)
-++|||+|+|+|+++.- .+.|-|..+ -++.+... --+.|..+.|. .-+++++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~---cldki~yieW~ads~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET---------------------LQLHQLFL---CLDKIVYIEWKADSCHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch---------------------hhHHHHHH---HHHHhhheeeeccceeeeeee
Confidence 68899999999999876 555544332 22222111 13456678888 44455544
Q ss_pred --CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 471 --GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 471 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
++.|.+|++...+-...+.....++.++.|+||| .+.+...|-.|.+|.+.+.+... +.-.+..+..++|+|||+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 8999999999988888898888899999999999 66777789999999998866543 332345568899999999
Q ss_pred EEEEEeCC------------------------------------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEE
Q 004683 547 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 547 ~l~s~s~d------------------------------------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
+.+..+.- ..+.+||--- ...+.....+ -.+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-----eykv~aYe~~-----lG~k~v 216 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-----EYKVYAYERG-----LGLKFV 216 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-----hheeeeeeec-----cceeEE
Confidence 87766431 1233444221 0011001111 468899
Q ss_pred EEecCCCEEEEE-ecCcEEEEeCCCCceeEE-------------------------------------------------
Q 004683 591 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ------------------------------------------------- 620 (737)
Q Consensus 591 ~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~------------------------------------------------- 620 (737)
+|+|.++++++| .|+.+++.+--+-+....
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999995 898887754211111000
Q ss_pred -----------ecCC----CCCCCeEEEEEccCCCEEEEEecC--CeEEEEEcCCCeeEEEEecccccCCCCccCceeeE
Q 004683 621 -----------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 621 -----------~~~~----~h~~~v~~~~~sp~~~~l~sgs~d--g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
+++. .....+.-++||+|..++++-.+. +.+.+||+...++...+.. .+.+.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir-- 365 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR-- 365 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence 0000 012345678999999999986543 7899999998876665542 33455
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+..|+| ....|+.+.....+++|.+.-
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCC
Confidence 899999 566777777777899998864
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=7.8e-15 Score=147.00 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=156.3
Q ss_pred EEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-
Q 004683 457 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 531 (737)
Q Consensus 457 ~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~- 531 (737)
.+++|+ |..+++|+ ||++|+|+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 79999999 9999999988888888888999999999999999 99999999 999999999977665542
Q ss_pred -CCcceEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec
Q 004683 532 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 604 (737)
Q Consensus 532 -~~~~v~~l~~sp~g-----~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d 604 (737)
.......+.|+.|+ ..++....-+.|+.||+..+.....-...+....+ ..|++++.+++|++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 23446677888777 33444445677888887764331111222222333 479999999999999995 89
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
|.|-|++..+.+.++.++ +.|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998888876665 45899999999999999999999999888887664
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.2e-13 Score=151.15 Aligned_cols=207 Identities=17% Similarity=0.111 Sum_probs=143.9
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---CeEEEEecCCCcE--EEEEcCCCcceEEEEEeCC
Q 004683 471 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g~I~vwd~~~~~~--~~~l~~~~~~v~~l~~sp~ 544 (737)
+..|.+||..... .+.+..+...+.+..|+||| .++.++.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 3689999986444 56677777889999999999 88776643 3799999988764 3333333 446899999
Q ss_pred CCEEEEEe-CCCcEEEE--eCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCC-cee
Q 004683 545 LNVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NHT 618 (737)
Q Consensus 545 g~~l~s~s-~dg~I~lw--dl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~-~~~ 618 (737)
|+.|+.++ .+|.+.+| |+.++. ...+.. +. ..+....|+|||+.|+. + .++...||++... ...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~------~~~lt~-~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT------PSQLTS-GA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC------eEeecc-CC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 99888765 67766555 665532 121222 22 46778999999998876 4 5677777776432 222
Q ss_pred EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 619 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 619 ~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
..+ . +.. ....|+|||++|+.++.++ +.+||+.+++....... .... .++|+| |+.+|+++
T Consensus 329 ~~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~----------~~~~--~~~~sP-dG~~i~~~ 389 (429)
T PRK01742 329 SLV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST----------FLDE--SPSISP-NGIMIIYS 389 (429)
T ss_pred EEe-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC----------CCCC--CceECC-CCCEEEEE
Confidence 222 2 222 4578999999998887765 56699998875432211 0112 678999 89999999
Q ss_pred ECCCcEEEEecC
Q 004683 699 LTNGRVHVIEPL 710 (737)
Q Consensus 699 s~Dg~V~iWd~~ 710 (737)
+.+|.+.+|.+.
T Consensus 390 s~~g~~~~l~~~ 401 (429)
T PRK01742 390 STQGLGKVLQLV 401 (429)
T ss_pred EcCCCceEEEEE
Confidence 999999988874
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.8e-14 Score=144.41 Aligned_cols=197 Identities=17% Similarity=0.112 Sum_probs=150.0
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
.+++|+++| .+++|+.||++++|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++. +++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----ALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hhh
Confidence 689999999 99999999999999977777777777799999999999999999999999 99999999963 233
Q ss_pred ecc-cCCCCCCCCeEEEEEecCC---CE-EEEE--ecCcEEEEeCCCCce---eEEecCCCCCCCeEEEEEccCCCEEEE
Q 004683 575 SFQ-TGLVPETTIVNHIQFHPDQ---IH-LLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 575 ~~~-~~~~~~~~~v~~l~~sp~g---~~-l~~~--~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~s 644 (737)
... .... .....+.|+.++ .+ +++. .-+.|+.||+..... .+..+.-.....|++++.|++|++++.
T Consensus 222 ~~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 222 RKTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hcCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 121 1111 456678888776 33 3333 446677776643211 111111011457999999999999999
Q ss_pred EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 645 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 645 gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
|+.||.|-|++..+.+.....+. .+...|+.+.|+| |.+++++.+.|....|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999999999999887766542 2234577999999 899999999999999988764
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=4.8e-15 Score=149.42 Aligned_cols=282 Identities=11% Similarity=0.111 Sum_probs=215.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
..+-..+.++.+|++|+.|+.-|.+-.+|+.+... ...+ .-...|.++.|- .++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------~~Ei---~v~Etv~Dv~~LHneq~ 184 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------HFEI---NVMETVRDVTFLHNEQF 184 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee---------------------eeee---ehhhhhhhhhhhcchHH
Confidence 34568899999999999999999999888774322 1111 245678888887 667
Q ss_pred EEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 466 LFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 466 l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
+|++....++|||-. |..+..+..|. .|..+.|-|.. .|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-
T Consensus 185 ~AVAQK~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred HHhhhhceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc
Confidence 777779999999954 77777776654 57889999999 9999999999999999999999988877888999999998
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecC
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~ 623 (737)
+..+-+|...|+|.+|.... ..++..+.. |. ++|.++++.++|.|+++ |.|..++|||+++...+.++..
T Consensus 263 NaVih~GhsnGtVSlWSP~s-----kePLvKiLc-H~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNS-----KEPLVKILC-HR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cceEEEcCCCceEEecCCCC-----cchHHHHHh-cC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 88999999999999999887 344443443 43 79999999999999998 6999999999998887776644
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC-CCe--eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 624 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~-~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
..+...+++|..| +++.+....|.||.=. .+. ....+-.|.. .+ .|..+.|.| ..++|-.|..
T Consensus 334 ---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~------~~--~V~~l~FcP-~EDvLGIGH~ 399 (545)
T KOG1272|consen 334 ---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRC------GG--PVEDLRFCP-YEDVLGIGHA 399 (545)
T ss_pred ---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhcc------Cc--ccccceecc-HHHeeecccc
Confidence 3456678887655 3444455679999532 221 1111111111 22 344899999 7888988888
Q ss_pred CCcEEEEecCCCceeeee
Q 004683 701 NGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 701 Dg~V~iWd~~~~~~~w~~ 718 (737)
.|.-.|.=+-.|++.+..
T Consensus 400 ~G~tsilVPGsGePN~Ds 417 (545)
T KOG1272|consen 400 GGITSILVPGSGEPNYDS 417 (545)
T ss_pred CCceeEeccCCCCCCcch
Confidence 887777777777776544
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6.3e-13 Score=130.38 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=186.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CC
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 464 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~ 464 (737)
...+..++|++.--.+|++..|.+|++|+-... +...+. ......|.|++|- +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst----------------------~pt~Lk-s~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----------------------CPTKLK-SVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC----------------------CCceec-chhhcceeEEEeccCCcc
Confidence 456788999997777899999999999985421 111111 0245679999998 77
Q ss_pred EEEEEeCCeEEEEECCCC----cE----------EEEecCCCCCeEEEEEcCCC-eEEEEEC-CCeEEEEecCCCcEEEE
Q 004683 465 HLFSASGGKISIFSLETF----QT----------LATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK 528 (737)
Q Consensus 465 ~l~s~sdg~i~vwd~~~~----~~----------~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg~I~vwd~~~~~~~~~ 528 (737)
.|+.|+.+-|.+|..... .. +....+| ..|+++.|.+|| .+++++. |..|.+||+.++..+..
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 888888999999987431 11 1122244 579999999999 8887775 56899999999987765
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcE
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 607 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I 607 (737)
....-+.++-+.|+|||.++..++-|+..++|+... +... + ...+. +.|...+|+|+|++|+.+..|.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e-----r-w~lgs----grvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE-----R-WILGS----GRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec-----c-eeccC----CceeeeeecCCCCEEEEEEcCCc
Confidence 534467788999999999999999999999996543 2211 1 12222 68999999999999887655555
Q ss_pred EEEeCCC-Cc--------------eeEEec-----CC--CCCCCeEEEEEccCCCEEEEEecCC--------eEEEEEcC
Q 004683 608 DVYEAPT-LN--------------HTSQLV-----PD--KMDLPITYATYSCDGKCIYVSCKSG--------HVKVFDTS 657 (737)
Q Consensus 608 ~iwd~~~-~~--------------~~~~~~-----~~--~h~~~v~~~~~sp~~~~l~sgs~dg--------~I~vwd~~ 657 (737)
++|.+.- ++ ++..+. .+ --.+.+.+++|.|.|.+|++.-..+ .|.+||..
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 5555431 10 000000 00 0146788999999999999865443 36667765
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEccC--CCCEEEEEECCCcEEEEecC
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~Dg~V~iWd~~ 710 (737)
..-.+.... .... .| .. +-.++|+|. ++.+|..+=..|.+.-|.+.
T Consensus 384 ~sp~vels~-cg~i-~g--e~---P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 384 KSPPVELSY-CGMI-GG--EY---PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCceEEEe-cccc-cC--CC---CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 443322221 1111 01 11 224555543 46677777778888777664
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=3.5e-13 Score=150.47 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=177.5
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCC-------CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEE
Q 004683 451 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 518 (737)
Q Consensus 451 ~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vw 518 (737)
.|...|..++.+ +.++++|+ ||+|++||... .+...++......+.++...+.+ .+|+|+.||.|.+.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 588888899888 57999999 99999999853 12333444456789999999999 99999999999999
Q ss_pred ecCCC--c-----EEEEEcCC-CcceEE-EEEeC-CCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe
Q 004683 519 CPCTK--K-----TKAKLKGH-QNRITC-LAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 587 (737)
Q Consensus 519 d~~~~--~-----~~~~l~~~-~~~v~~-l~~sp-~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v 587 (737)
+++.. . +......+ .+.+.+ -++.. .+. .++.+..-+.|..||++....... ++ ....| +.|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--lk-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--LK-NQLRH----GLV 1198 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--hh-cCccc----cce
Confidence 88752 1 11111111 223333 34433 333 678888889999999997322111 11 12223 789
Q ss_pred EEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc---CCCEEEEEe--cCCeEEEEEcCCCee
Q 004683 588 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---DGKCIYVSC--KSGHVKVFDTSTLEL 661 (737)
Q Consensus 588 ~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~l~sgs--~dg~I~vwd~~~~~~ 661 (737)
++++.+|.+.+++.| ..|.+.+||++-+.++..+..+ +..++..++.+| ...+.++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999997 7899999999999999888754 458888888775 334555544 468899999999987
Q ss_pred EEEEecccc-------cCCC--CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 662 RCQINLTAY-------AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 662 ~~~~~~~~~-------~~~g--~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
...+....- .+.. .....+.....++.. .+..+.+|+.|+.|+.||...++..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccc
Confidence 776654311 1110 001112222333333 4678999999999999999887644
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=6.2e-13 Score=128.62 Aligned_cols=230 Identities=11% Similarity=0.107 Sum_probs=165.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
..+|+|.+|++|++.+|.+.....|.||...+.+. |.. ..++. .|...|+.+.|+ .+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------w~~-----~htls--~Hd~~vtgvdWap~snr 69 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------WEP-----AHTLS--EHDKIVTGVDWAPKSNR 69 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-------------cee-----ceehh--hhCcceeEEeecCCCCc
Confidence 46899999999999999999999999998775432 221 11111 599999999999 889
Q ss_pred EEEEe-CCeEEEEEC-CCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE----EEEcCCCcce
Q 004683 466 LFSAS-GGKISIFSL-ETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK----AKLKGHQNRI 536 (737)
Q Consensus 466 l~s~s-dg~i~vwd~-~~~--~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~----~~l~~~~~~v 536 (737)
|++|+ |..-++|.. ..+ +....+..++..++++.|+|.. .||+|+....|.||-++...-- +.-+.+.+.|
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 99999 999999998 434 3444556788899999999999 9999999999999987754321 1223467889
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee---------eceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCc
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 606 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~---------~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~ 606 (737)
.+++|+|++-++++|+.|+..|++..--.... ...++-.+........+.+..+.|+|+|..|+- +.|+.
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence 99999999999999999999999864210000 001111110000011278999999999999986 89999
Q ss_pred EEEEeCCCCc-eeEEecCCCCCCCeEEEEEccCC
Q 004683 607 IDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 607 I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
+.+-|..... .+..... . .-+..++.|-.+.
T Consensus 230 v~~~da~~p~~~v~~~~~-~-~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVAT-A-QLPLLSVSWISEN 261 (361)
T ss_pred eEEeecCCCchhccchhh-c-cCCceeeEeecCC
Confidence 9999986554 2333322 1 3556666665443
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.7e-13 Score=131.07 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=157.7
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC---cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEec-CCC
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP-CTK 523 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~-~~~ 523 (737)
-..+|+|.+|+ +..+|.+. ...|.||..... +...++..|+..|++++|+|.. .|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999 66777777 678999987654 4677888999999999999999 9999999999999998 333
Q ss_pred c--EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 524 K--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 524 ~--~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
+ +.-.+..+...++++.|+|.++.+++||....|.||-++....= -.-+.+...+. ..|.++.|+|++-.+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAA 163 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecc
Confidence 3 33445558889999999999999999999999999988752210 00111222222 78999999999999988
Q ss_pred -EecCcEEEEeCC-----C-------------CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 602 -IHEGQIDVYEAP-----T-------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 602 -~~dg~I~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
+.|+..++|..- . |..+.++. ...+.+.++.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 589999998631 1 12222232 247889999999999999999999999999987765
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=127.94 Aligned_cols=291 Identities=12% Similarity=0.062 Sum_probs=179.2
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
|.+.-..+|++..|..|++|+-.. ++... +.. .....|.|++|-|.+ +-|+.|+. +-|.+|.....-.
T Consensus 106 WhqH~~~fava~nddvVriy~kss-----t~pt~-Lks-~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln--- 174 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSS-----TCPTK-LKS-VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN--- 174 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCC-----CCCce-ecc-hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc---
Confidence 444444578899999999999764 12111 221 136789999999965 44555554 6788998764221
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
..... + .-+....+.+...+| .+|++++|. |..+++++ +..|.|||+.++..+.......+.++-+.||
T Consensus 175 -~~r~~--~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 175 -ANRNI--R---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred -ccccc--c---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 11000 0 001111122222245 789999999 88999998 6899999999998877665556788899999
Q ss_pred CCC-eEEEEECCCeEEEEecCC-CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc----ee------e
Q 004683 502 PQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK----KL------C 569 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~-~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~----~~------~ 569 (737)
||| .+++++-|+..++|+... ....+-.- ..+.|....|+|+|++++.++. |.-++|.+.-.. .. .
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred CCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccccee
Confidence 999 999999999999996443 33333233 3558999999999998765543 233444432110 00 0
Q ss_pred ceeee-----ecccCCCCCCCCeEEEEEecCCCEEEEEec---------CcEEEEeCCCCceeEEec-CCCCCCCeEEEE
Q 004683 570 SKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSIHE---------GQIDVYEAPTLNHTSQLV-PDKMDLPITYAT 634 (737)
Q Consensus 570 ~~~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~~~d---------g~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~ 634 (737)
...+. ++..+..---+++.+++|.|.|.+|++... +.|.+||.+..-++.-.. +........-++
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is 405 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS 405 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence 00000 011111000167889999999999998522 236778886554433221 111122244567
Q ss_pred Ecc---CCCEEEEEecCCeEEEEEcC
Q 004683 635 YSC---DGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 635 ~sp---~~~~l~sgs~dg~I~vwd~~ 657 (737)
|+| ++.+|..+=..|.+.-|++.
T Consensus 406 F~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eeecccCCcEEEEEeccCceEeeeeE
Confidence 765 56667667666777666643
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.5e-14 Score=144.11 Aligned_cols=294 Identities=14% Similarity=0.065 Sum_probs=211.0
Q ss_pred CCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEee
Q 004683 339 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWK 416 (737)
Q Consensus 339 ~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd--g~~L~s~s~dg~i~iWd 416 (737)
++|...+.|...|..+++||.|..|.+||+... ..... +.+ ||...|....|-|. .+-+++++.||.+++=.
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l~--f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKLS--FES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhcc---Ccccc--ccc-ccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 345555558889999999999999999999852 22222 332 49999999899883 45689999999998765
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEec---
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA--- 489 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~--- 489 (737)
+.. ++.+..+.....|.++|..++.- ...|.+++ |+.+.-.|+..+.....+.
T Consensus 216 i~~--------------------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 216 ILE--------------------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred ecc--------------------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence 432 23333222223589999988887 56788888 9999999988765443332
Q ss_pred CCCC---CeEEEEEcCCC--eEEEEECCCeEEEEecCCCc------EEEEEcC------CCcceEEEEEeCCCCEEEEEe
Q 004683 490 NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKG------HQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 490 ~~~~---~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~------~~~~l~~------~~~~v~~l~~sp~g~~l~s~s 552 (737)
.+.. ....++..|-. .+++|+.|..+++||.+.-. .+..+.. ....|++++|+.++.-+.++-
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 3333 45788889988 89999999999999976421 1223322 235689999998888788888
Q ss_pred CCCcEEEEeCCCCce---e----eceeeeecccCCCCCCCCeEEEEE-ecCCCEEEEEec-CcEEEEeCCCCceeEEecC
Q 004683 553 ADAQLCVWDAVGWKK---L----CSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHE-GQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~---~----~~~~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~~~d-g~I~iwd~~~~~~~~~~~~ 623 (737)
.|-.|+++.-.-+.. . ....+....+||.+. ..|..+-| .|...++++|+| |.|.||+-.+++.++.+.+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 888999995433211 0 012223235677532 33666654 678889998755 8999999999999988887
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 624 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
..| -|+|+.-+|--..||+.+-|..|+||-..+.+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 543 899999999999999999999999999755443
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.1e-11 Score=120.20 Aligned_cols=215 Identities=13% Similarity=0.258 Sum_probs=156.4
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc-------ccc------------------ccc---eeeeeEEeecCC
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-------SLE------------------EEN---VNMESQLYQPSS 440 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~-------~~g------------------~~~---~~~~~~l~~~~~ 440 (737)
.....++|+.|...++.|..+ -.+||+.+.-.. ..| ... ....+.+||-..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 345669999999887776654 578998776333 111 111 111357899766
Q ss_pred CeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECC-CCcEEEEecCC--CCCeEEEEEcCCC-eEEE-EECCCeE
Q 004683 441 KLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANP--PPIATYFILLPQD-LFAF-GFDDSSI 515 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~-~~~~~~~~~~~--~~~v~~~~~s~~~-~l~s-gs~dg~I 515 (737)
..++..+. ...+|.++.+..+.+++.-.+.|+||... +.+.++.+..- ..+..+++-+.+. .||. |-.-|.|
T Consensus 85 ~~~i~el~---f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELS---FNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEE---eccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 66666554 67899999999888888889999999987 55666666532 2333333322233 4443 4456899
Q ss_pred EEEecCCCcE--EEEEcCCCcceEEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 516 LVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 516 ~vwd~~~~~~--~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~-I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
++-|+...+. ...+..|.+.|.|++.+-+|..+|++|..|+ ||+||..+++. ++.+..|... ..|.+++|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-----l~E~RRG~d~--A~iy~iaF 234 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-----LQELRRGVDR--ADIYCIAF 234 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----eeeeecCCch--heEEEEEe
Confidence 9999876554 3677889999999999999999999999997 79999999654 4445555443 78999999
Q ss_pred ecCCCEEEEE-ecCcEEEEeCCC
Q 004683 593 HPDQIHLLSI-HEGQIDVYEAPT 614 (737)
Q Consensus 593 sp~g~~l~~~-~dg~I~iwd~~~ 614 (737)
||++.+|+++ ..|+++||.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 9999999995 669999999864
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=1.5e-10 Score=123.07 Aligned_cols=285 Identities=15% Similarity=0.131 Sum_probs=178.4
Q ss_pred EEEEecC----CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----CCcEEEeeccCCccccc
Q 004683 354 AVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLE 425 (737)
Q Consensus 354 la~~s~d----g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~----dg~i~iWd~~~~~~~~g 425 (737)
++.|+.. +.|.+|+++.. .+.......-. -......++++|++++|.++.. ++.|..|++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~--~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~------ 71 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEE--TGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP------ 71 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETT--TTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET------
T ss_pred EEEEcCCCCCCCcEEEEEEcCC--CCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC------
Confidence 3455554 68888888532 34433221110 2456678999999999999987 46777776553
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCC-CcEEEE---ec--------
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA-------- 489 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~-~~~~~~---~~-------- 489 (737)
+++.+...............++++ +++++++. +|.|.++++.. |..... +.
T Consensus 72 -------------~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 72 -------------DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp -------------TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred -------------CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 222221111100123455678887 88888887 79999999976 443332 21
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEE-CCCeEEEEecCCCc--EE--EEEc-CCCcceEEEEEeCCCCEEEEEe-CCCcEEE
Q 004683 490 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCV 559 (737)
Q Consensus 490 --~~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~~~--~~--~~l~-~~~~~v~~l~~sp~g~~l~s~s-~dg~I~l 559 (737)
.......++.++|++ ++++.. ....|.+|++.... .. ..+. ......+.++|+|+++++.+.. .++.|.+
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 123457899999999 666554 34589999987654 32 2222 2346678999999999876665 4778999
Q ss_pred EeCC--CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCC--CCce--eEEecCCCCCCCeE
Q 004683 560 WDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPDKMDLPIT 631 (737)
Q Consensus 560 wdl~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~--~~~~--~~~~~~~~h~~~v~ 631 (737)
+++. .+.......+..++.+... ......++++|+|++|+++ ..++|.+|++. ++.. +..+.. .....+
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr 295 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPR 295 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEE
T ss_pred EeecccCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCcc
Confidence 9988 4433333333333332211 1367899999999999986 56789999983 3433 333332 144589
Q ss_pred EEEEccCCCEEEEEec-CCeEEEEEc--CCCeeEEE
Q 004683 632 YATYSCDGKCIYVSCK-SGHVKVFDT--STLELRCQ 664 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs~-dg~I~vwd~--~~~~~~~~ 664 (737)
.++++|+|++|+++.. ++.|.+|++ .+|.+...
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 9999999999998774 578999976 57765544
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=5.3e-13 Score=137.12 Aligned_cols=241 Identities=14% Similarity=0.187 Sum_probs=162.9
Q ss_pred eEEEEEe--CCEEEEEeCCeEEEEECCCCcE----EEEecCCCCCeEEEEE-----cCCC-eEEEEECCCeEEEEecCCC
Q 004683 456 ISCFALR--GSHLFSASGGKISIFSLETFQT----LATFANPPPIATYFIL-----LPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 456 V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~-----s~~~-~l~sgs~dg~I~vwd~~~~ 523 (737)
+....++ |++|+..-...+++|+...+.. +....-.....+|-+| .|++ -+++|-.-|.|.+.|....
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 4444444 6677666667788888764322 1111111112223344 4566 8889999999999997653
Q ss_pred cEEEEEcC----CCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceee-----------c------------eeeee
Q 004683 524 KTKAKLKG----HQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC-----------S------------KFLHS 575 (737)
Q Consensus 524 ~~~~~l~~----~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~-----------~------------~~~~~ 575 (737)
+..+.+.. .+..|+|+.|-|.+ ..++.+-.+|.+++||..-..... . .++..
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 32222211 35789999999844 566777789999999764210000 0 01110
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
+.. ..+.|...+|+|||++||+ +.||.++|||..+.+++..++. .-+...|++|||||+||++|++|.-|.||
T Consensus 286 w~~----~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 286 WHI----GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred eEe----ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEE
Confidence 111 1257889999999999998 8999999999998877665543 36779999999999999999999999999
Q ss_pred EcCCCeeEEEEecccccCCCCccCceeeEEEEEccC----------------------------------C---------
Q 004683 655 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------E--------- 691 (737)
Q Consensus 655 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~----------------------------------d--------- 691 (737)
.+..++++.+-.+| . -||..|+|.|- +
T Consensus 360 Sf~erRVVARGqGH--------k--SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~ 429 (636)
T KOG2394|consen 360 SFEERRVVARGQGH--------K--SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNR 429 (636)
T ss_pred EeccceEEEecccc--------c--cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccc
Confidence 99999988874422 2 34446666520 0
Q ss_pred ----CCEEEEEECCCcEEEEecCCC
Q 004683 692 ----PNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 692 ----~~~las~s~Dg~V~iWd~~~~ 712 (737)
...|.+.+.|-.+.+||+...
T Consensus 430 ~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 430 INSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred ccceEEEeecccccceEEEEecchh
Confidence 124778889999999999754
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=2.9e-12 Score=124.06 Aligned_cols=238 Identities=14% Similarity=0.183 Sum_probs=161.2
Q ss_pred CeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCC--eEEEEEcCCCeEEEEECC------CeEEEEecCCCc
Q 004683 455 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPI--ATYFILLPQDLFAFGFDD------SSILVHCPCTKK 524 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~s~~~~l~sgs~d------g~I~vwd~~~~~ 524 (737)
...+++|+ ..-+++|.|.-.++|+++--+....-+.+.++ +.-+-|..+-..++|+.+ ..|.|||=...+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34458888 44566666888999998764332222222222 222222222134455444 379999976777
Q ss_pred EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-
Q 004683 525 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I- 602 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~- 602 (737)
++.++. ...+|.++.+.++ .+++.- ++.|+||...+... ..+.+.+.... ....+++-+.+..+|+. |
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NP-----kGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNP-----KGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCC-----CceEeecCCCCceEEEcCCC
Confidence 888777 5788999999875 344443 67899999875211 11222211111 33444444434445555 5
Q ss_pred ecCcEEEEeCCCCce--eEEecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEEcCCCeeEEEEecccccCCCCccCc
Q 004683 603 HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLE 679 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~-I~vwd~~~~~~~~~~~~~~~~~~g~~~~~ 679 (737)
.-|.|.|-|+...+. ...+. .|...|.+++.+-+|..||++|..|+ |||||..+|..+..+.. |.....
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~--AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~ 228 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIIN--AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRAD 228 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEE--cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchhe
Confidence 669999999976554 23443 48999999999999999999999997 79999999999998863 433445
Q ss_pred eeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 680 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 680 v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++ +++||| +..+||++|+-|+|+|+.+....
T Consensus 229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 55 999999 89999999999999999997643
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.7e-12 Score=132.90 Aligned_cols=291 Identities=12% Similarity=0.116 Sum_probs=194.0
Q ss_pred CCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE-EEe--
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALR-- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v-~~s-- 462 (737)
|...-+.+..||||+|+++.|. --.|++||+.+... .+ + . +-...+..+ -.+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KF-----E----------R--hlDae~V~feiLsDD 105 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KF-----E----------R--HLDAEVVDFEILSDD 105 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee-------ee-----e----------e--cccccceeEEEeccc
Confidence 6777889999999998766554 67899998764221 00 0 0 122222222 222
Q ss_pred -CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 463 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 463 -~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
.+.+.-..|.+|-+..-- |..- .+.- ...-..++++.-. -|++++....|+-++++.|+-+..+....+.++++.
T Consensus 106 ~SK~v~L~~DR~IefHak~-G~hy-~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKY-GRHY-RTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred hhhheEeecCceeeehhhc-Ceee-eeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 222333335665544321 1111 1110 1112345565545 455666667899999999999999988789999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC--CCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCce
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 617 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~ 617 (737)
.++...+|++|+.+|.|..||.++...........-...|. .....|+++.|+.+|-.+++| .+|.|.|||+++.++
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99999999999999999999998743322211110101111 011459999999999999996 899999999999988
Q ss_pred eEEecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE
Q 004683 618 TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 695 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 695 (737)
+..-. +....+|..+.|-+. +..|++ .+...++|||-.+|+....+.+ ...++ .+++-| ++.++
T Consensus 263 l~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp---------t~~lN--D~C~~p-~sGm~ 328 (703)
T KOG2321|consen 263 LLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP---------TSDLN--DFCFVP-GSGMF 328 (703)
T ss_pred eeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc---------cCCcC--ceeeec-CCceE
Confidence 76542 334778999999764 334443 4557899999999998888754 22355 888899 78899
Q ss_pred EEEECCCcEEEEecCC--Cceeeee
Q 004683 696 ALGLTNGRVHVIEPLE--SEVEWGK 718 (737)
Q Consensus 696 as~s~Dg~V~iWd~~~--~~~~w~~ 718 (737)
.++-+++.+..|=+.. +.++|..
T Consensus 329 f~Ane~~~m~~yyiP~LGPaPrWCS 353 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPSLGPAPRWCS 353 (703)
T ss_pred EEecCCCcceeEEccccCCCchhhh
Confidence 9999998877766654 4567765
No 222
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.4e-10 Score=115.13 Aligned_cols=279 Identities=11% Similarity=0.073 Sum_probs=184.6
Q ss_pred CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEeeccCCcccccccceeeeeEEe
Q 004683 360 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 436 (737)
Q Consensus 360 dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d---g~i~iWd~~~~~~~~g~~~~~~~~~l~ 436 (737)
...|.+|++++. .+......+-. +.+.++-++|+|++++|.++..+ |.|..|. |
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~-------------------i 71 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYR-------------------I 71 (346)
T ss_pred CCceEEEEEeCc--ccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEE-------------------E
Confidence 456899999853 23332222222 57889999999999999998775 4555554 4
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCC-CcEEEE--ecCCCCC----------eEEEE
Q 004683 437 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 499 (737)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------v~~~~ 499 (737)
|..+|.+...-.......+-+.++++ |++++++. .|.|.++-+.. |..... ...|.+. +.+..
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 55555543221111123334778888 88999998 59999999865 433222 1133333 77889
Q ss_pred EcCCC-eEEEEEC-CCeEEEEecCCCcEEE----EEcCCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--Cceeec
Q 004683 500 LLPQD-LFAFGFD-DSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCS 570 (737)
Q Consensus 500 ~s~~~-~l~sgs~-dg~I~vwd~~~~~~~~----~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~--~~~~~~ 570 (737)
+.|++ +|++.+- --.|.+|++..|.... .+ ......+.++|+|++++..+.+. +++|.+|.... ++....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 99999 7766653 3389999999776432 22 23456788999999999877665 88999999887 343333
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCC--CceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+.+.+++.... +......|.++|+|++|.+| ....|.+|.+.. +++...-....+....+...|+++|++|++++
T Consensus 231 Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 231 QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 44444444432 22567789999999999997 445888888764 33211111112355578899999999999888
Q ss_pred cC-CeEEEEEcC--CCeeEE
Q 004683 647 KS-GHVKVFDTS--TLELRC 663 (737)
Q Consensus 647 ~d-g~I~vwd~~--~~~~~~ 663 (737)
++ ..|.+|.+. +|++..
T Consensus 310 q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 310 QKSDNITVFERDKETGRLTL 329 (346)
T ss_pred cCCCcEEEEEEcCCCceEEe
Confidence 76 568888765 565443
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=8.3e-12 Score=137.20 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=147.1
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
..|.++|.. |...+.+..+...+.+..|+||| .|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899985 55556677778889999999999 7776653 458999999988653 44456667788999999998
Q ss_pred EE-EEeCCCc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec--CcEEEEeCCCCceeEE
Q 004683 548 LV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 548 l~-s~s~dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d--g~I~iwd~~~~~~~~~ 620 (737)
++ +.+.++. |++||+.++.. ..+.. +. .......|+|||+.++.. .+ ..|++||+..+... .
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~------~~Lt~-~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT------TRLTD-SP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce------EEccC-CC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 76 4555555 77778887432 21222 21 345678999999988873 23 36889998766543 3
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+.. +...+....|||||++|+..+.+ ..|.+||+.++.. ..+.. + ..+ ..+.|+| ||+.|+.
T Consensus 329 lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~---~~~--~~p~~sp-DG~~i~~ 393 (435)
T PRK05137 329 ISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------G---FLV--EGPTWAP-NGRVIMF 393 (435)
T ss_pred eec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------C---CCC--CCCeECC-CCCEEEE
Confidence 322 24456678999999999876643 3688899876543 33321 1 112 3789999 7888776
Q ss_pred EECC------CcEEEEecCCCce
Q 004683 698 GLTN------GRVHVIEPLESEV 714 (737)
Q Consensus 698 ~s~D------g~V~iWd~~~~~~ 714 (737)
.+.+ ..+.++++..+..
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce
Confidence 5543 2577777765543
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.9e-11 Score=125.63 Aligned_cols=290 Identities=11% Similarity=0.125 Sum_probs=190.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc---------------ccccccee--------------eeeEEeec
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---------------SLEEENVN--------------MESQLYQP 438 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~---------------~~g~~~~~--------------~~~~l~~~ 438 (737)
..++...++|++|+++|.+ .+..++|++...... +.|..... ....+|+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 3446788899999876655 456777777665521 22222111 12367888
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC---eEEE-----
Q 004683 439 SSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAF----- 508 (737)
Q Consensus 439 ~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~l~s----- 508 (737)
+++.....+... .... ++..|+ +..+++-- .+.+.+|+..+.+... -.-|...|+.+.++|.+ .+|+
T Consensus 113 et~~~~s~~q~k-~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 113 ETGVQRSQIQKK-MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred ccceehhheehh-hhcC-cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC
Confidence 775443332221 2222 578888 55555544 7899999987633221 12456789999999985 4443
Q ss_pred EECCCeEEEEecCCCcEE-----EEEcCCCcceEEEEEeCCCCEE-EEEe--CC---------CcEEEEeCCCCceeece
Q 004683 509 GFDDSSILVHCPCTKKTK-----AKLKGHQNRITCLAYSLSLNVL-VSSG--AD---------AQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 509 gs~dg~I~vwd~~~~~~~-----~~l~~~~~~v~~l~~sp~g~~l-~s~s--~d---------g~I~lwdl~~~~~~~~~ 571 (737)
++.-+.|++|.......- ++| ....-..+.|++-|.-| +.++ -| .++++.++.+. .
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-----s 262 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-----S 262 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-----e
Confidence 344458999986522111 122 12233457788877642 2222 23 35778777731 1
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEE--E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
..-.+.. . ++|.++.|+|+|+.+++ | .-..+.|||+ .+.++..+. .++-.++-|+|.|++++.+|-+
T Consensus 263 ~~V~L~k--~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 263 VSVPLLK--E---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred EEEecCC--C---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceEECCCCCEEEEeecC
Confidence 1111222 2 79999999999988887 4 5678999999 578887773 5677889999999999987764
Q ss_pred ---CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC------CCcEEEEecCC
Q 004683 649 ---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIEPLE 711 (737)
Q Consensus 649 ---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~V~iWd~~~ 711 (737)
|.|-|||+.+.+++..+... +.+-+.|+| ||.+|+|++. |+.++||+..-
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 89999999998888877532 234689999 8999998874 68899999853
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.2e-11 Score=135.19 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=142.2
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
..|.+||.+.... +.+..+...+.+..|+||| .|+..+. +..|++||+.+|+... +....+.+...+|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3789999875443 4444556688999999999 7775442 3479999998886433 2223334557899999998
Q ss_pred EEEE-eCCC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Ee-cC--cEEEEeCCCCceeEE
Q 004683 548 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQ 620 (737)
Q Consensus 548 l~s~-s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~-dg--~I~iwd~~~~~~~~~ 620 (737)
|+.. +.+| .|++||+.++.. ..+..+. ..+....|+|+|+.|+. +. ++ .|+++|+.++... .
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~------~~lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~ 325 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQI------RQVTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R 325 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCE------EEccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence 8865 4444 488999987432 2133222 45778999999998886 42 33 4666677666543 3
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+.. ........+|||||++|+..+.+ ..|++||+.+++.. .+.. .... ....|+| ||.+|+.
T Consensus 326 lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---------~~~~--~~p~~Sp-DG~~i~~ 390 (429)
T PRK03629 326 ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---------TFLD--ETPSIAP-NGTMVIY 390 (429)
T ss_pred eec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---------CCCC--CCceECC-CCCEEEE
Confidence 322 23445678999999999876543 46889999988743 3321 1111 2578999 8999999
Q ss_pred EECCCc---EEEEecC
Q 004683 698 GLTNGR---VHVIEPL 710 (737)
Q Consensus 698 ~s~Dg~---V~iWd~~ 710 (737)
++.++. +.+|++.
T Consensus 391 ~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEcCCCceEEEEEECC
Confidence 888864 6677774
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=1.6e-12 Score=126.66 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=171.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 462 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----- 462 (737)
.+-|.+|.|..+|.+||+|..+|.|.++.-..... |........+.-+++-..+.. + .-...|..+.|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey~~~t~fqshepEFDYLkS-l---eieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GEYNFQTEFQSHEPEFDYLKS-L---EIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc--cceeeeeeeeccCcccchhhh-h---hhhhhhhhceecCCCCc
Confidence 57789999999999999999999999987443211 110000000000111111111 0 134678889998
Q ss_pred CCEEEEEeCCeEEEEECCCCc-----------------------------------EEEEe-cCCCCCeEEEEEcCCC-e
Q 004683 463 GSHLFSASGGKISIFSLETFQ-----------------------------------TLATF-ANPPPIATYFILLPQD-L 505 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~-----------------------------------~~~~~-~~~~~~v~~~~~s~~~-~ 505 (737)
..+|+++.|.+|++|.+.... +.+.+ .+|.-.|.++.++.|+ .
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 235666669999999874321 11122 2577778999999999 7
Q ss_pred EEEEECCCeEEEEecCCCc-E--EEEEcCC-----CcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCce-eeceeee-
Q 004683 506 FAFGFDDSSILVHCPCTKK-T--KAKLKGH-----QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK-LCSKFLH- 574 (737)
Q Consensus 506 l~sgs~dg~I~vwd~~~~~-~--~~~l~~~-----~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~-~~~~~~~- 574 (737)
++++. |-.|.+|+++--. + +..++.+ +.-|++..|+| ..+.++-.+..|+|++-|++.... .....+.
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 77654 8899999986322 1 2222322 35688899999 457788889999999999995211 0000000
Q ss_pred --------ecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCC-CCceeEEecCCCC----------CCC---eEE
Q 004683 575 --------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKM----------DLP---ITY 632 (737)
Q Consensus 575 --------~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~-~~~~~~~~~~~~h----------~~~---v~~ 632 (737)
.+..+-. ..|..+.|+++|+++++-.--+|++||+. ..+++.+++.+.+ ... -..
T Consensus 258 epedp~~rsffseiI---sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEII---SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred cccCCcchhhHHHHh---hhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 0111111 46889999999999998666899999994 5667766654321 122 245
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
++||-++.++++|+..+.+++++...|.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCc
Confidence 8899999999999999999999966543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=135.66 Aligned_cols=212 Identities=17% Similarity=0.087 Sum_probs=143.3
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
..|.+||.. +...+.+..+...+.+..|+||| .|+..+.+ ..|++||+.+++... +....+...+.+|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 368999986 44445566667788899999999 88877643 479999998886543 3334455567899999997
Q ss_pred EE-EEeCCC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecC--cEEEEeCCCCceeEE
Q 004683 548 LV-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 620 (737)
Q Consensus 548 l~-s~s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg--~I~iwd~~~~~~~~~ 620 (737)
++ +.+.+| .|++||+.+++. ..+.. +. .....++|+|+|+.++.+ .+| .|+++|+.+++...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~------~~lt~-~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL------TRLTN-HF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe------EECcc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 76 445555 599999987532 11222 21 344678999999998874 334 47778887766433
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+.. +......++|||||++|+..+.++ .|++||+.+++.. .+.. + ... ....|+| |+++++.
T Consensus 331 lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~---~~~--~~p~~sp-dG~~i~~ 395 (433)
T PRK04922 331 LTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------G---SLD--ESPSFAP-NGSMVLY 395 (433)
T ss_pred eec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------C---CCC--CCceECC-CCCEEEE
Confidence 222 123445789999999998765443 6999999888754 3321 1 112 2578999 7888776
Q ss_pred EECC---CcEEEEecCC
Q 004683 698 GLTN---GRVHVIEPLE 711 (737)
Q Consensus 698 ~s~D---g~V~iWd~~~ 711 (737)
.+.+ +.|.++++..
T Consensus 396 ~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 396 ATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEecCCceEEEEEECCC
Confidence 6653 3577777744
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=3.6e-11 Score=127.59 Aligned_cols=286 Identities=16% Similarity=0.167 Sum_probs=169.7
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 424 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~ 424 (737)
.++|||+++.+++.||.|.++|+.. .+.... ++ -.....++++|+||+++++++. ++.+.++|..+.+.
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~----~~~v~~-i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-- 112 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLAT----GKVVAT-IK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-- 112 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTS----SSEEEE-EE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--
T ss_pred EecCCCCEEEEEcCCCeEEEEECCc----ccEEEE-Ee---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc--
Confidence 3899999999999999999999985 333332 22 2456789999999999998764 78998888664322
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-CeEEEEECCCCcEEE-EecCCCCCeEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLA-TFANPPPIATYFI 499 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g~i~vwd~~~~~~~~-~~~~~~~~v~~~~ 499 (737)
...+ .++... .......+.++..+ ...++..- | +.|.+-|....+.+. .............
T Consensus 113 ---v~~I-------~~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 113 ---VKTI-------PTGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp ---EEEE-------E--EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred ---eeec-------cccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 1111 011000 00133456777666 55455444 4 888888977654332 2223344566889
Q ss_pred EcCCC-eEEE-EECCCeEEEEecCCCcEEEEEcC----CCcceEEE-------EEe--CCCCEEEEEeCCCcEEEEeCCC
Q 004683 500 LLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG----HQNRITCL-------AYS--LSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 500 ~s~~~-~l~s-gs~dg~I~vwd~~~~~~~~~l~~----~~~~v~~l-------~~s--p~g~~l~s~s~dg~I~lwdl~~ 564 (737)
|+|++ ++++ ...+..|-++|..+++.+..+.. |..++..+ .|. ..+...++.-....+.+||..+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 99999 5544 55677999999999887765532 33333332 121 1222232223334556788777
Q ss_pred CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-----ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC
Q 004683 565 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
++. ++++.... .+ ..+..+|+++++.+. ..++|.++|.++.+.+.++.... ...+..+.|+++|
T Consensus 259 wkv-----v~~I~~~G----~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG 327 (369)
T PF02239_consen 259 WKV-----VKTIPTQG----GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDG 327 (369)
T ss_dssp TSE-----EEEEE-SS----SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTS
T ss_pred CeE-----EEEEECCC----Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCC
Confidence 543 33333321 33 788899999999985 34789999999998887775421 3459999999999
Q ss_pred CEEEEEecC--CeEEEEEcCCCeeEEEEe
Q 004683 640 KCIYVSCKS--GHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 640 ~~l~sgs~d--g~I~vwd~~~~~~~~~~~ 666 (737)
+.+..+..+ +.|.|||..|.+...+++
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 988765554 379999999999999886
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=139.05 Aligned_cols=270 Identities=10% Similarity=0.156 Sum_probs=199.4
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..++.+|.+++.|+..|.+-.+|+.+.. -.|. +. -...|.++.|-.+.+++|++-. ..+.|||-...
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~--L~~E---i~---v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt---- 201 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKK--LHFE---IN---VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT---- 201 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccce--eeee---ee---hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCc----
Confidence 4478999999999999999999988531 1121 22 2568999999999998877754 56777764321
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE-EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~-l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
.. .|+. ....|..+.|- -.+ |++++ .|.++--|+.+|+.+..+....+.+..+.-+
T Consensus 202 --El-------------HClk------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 202 --EL-------------HCLK------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred --EE-------------eehh------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 11 1111 34567788888 444 55555 6999999999999999998888889999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
|-+ .+-+|..+|+|.+|.....+++..+..|.++|.++++.++|+++++.+.|..++|||++.. ..+++....
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-----~ql~t~~tp- 334 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-----YQLHTYRTP- 334 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-----cccceeecC-
Confidence 999 9999999999999999999888888889999999999999999999999999999999983 233323222
Q ss_pred CCCCCCeEEEEEecCCCEEEEEecCcEEEEeCC-C--CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 581 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~-~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
.+...+++|..| .||.|....|.||.=. . +..-..+..+...+.|..+.|.|-...|-.|...|--.+.=.-
T Consensus 335 ----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 335 ----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred ----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 356678888654 5566777789999522 2 1222223232336689999999988888777766644443333
Q ss_pred CC
Q 004683 658 TL 659 (737)
Q Consensus 658 ~~ 659 (737)
.|
T Consensus 410 sG 411 (545)
T KOG1272|consen 410 SG 411 (545)
T ss_pred CC
Confidence 33
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.9e-13 Score=136.33 Aligned_cols=214 Identities=15% Similarity=0.153 Sum_probs=158.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCC-
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT- 522 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~- 522 (737)
||.+.|+|+.|+ |.+|++|+ |-.+.|||.-..+.+..+. +|...|.|+.|-|.. .+++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999 99999999 7899999999888888876 999999999999865 899999999999999984
Q ss_pred ---------CcEEEEEcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce--eeceeeeecccCCCCCCCCeEEE
Q 004683 523 ---------KKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 523 ---------~~~~~~l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
......+..|...|..++..|++ ..+.+++.||+|+-+|++.... ....+...+..-+ +.--...++
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~-~~lielk~l 206 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN-PQLIELKCL 206 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc-hhhheeeee
Confidence 23345567799999999999988 7899999999999999986211 0000111000000 001356789
Q ss_pred EEecCCC-EEEEE-ecCcEEEEeCCC--------C----------ceeEEecCCCCC-----------CCeEEEEEccCC
Q 004683 591 QFHPDQI-HLLSI-HEGQIDVYEAPT--------L----------NHTSQLVPDKMD-----------LPITYATYSCDG 639 (737)
Q Consensus 591 ~~sp~g~-~l~~~-~dg~I~iwd~~~--------~----------~~~~~~~~~~h~-----------~~v~~~~~sp~~ 639 (737)
.++|... +|++| .|--.++||.+. + .++..+.+ +|. ..++-++|+|+|
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-ccccCcccccccceeeeEEEEECCCC
Confidence 9999874 55565 788899999431 1 12333332 121 125668899999
Q ss_pred CEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 640 KCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.-|++.-....|+++|+..++....+.
T Consensus 286 tElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 286 TELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cEEEEeeCCeEEEEEeecCCCCceeec
Confidence 888877777789999999887655443
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=5.2e-12 Score=125.53 Aligned_cols=251 Identities=13% Similarity=0.065 Sum_probs=179.2
Q ss_pred CCCCeEEEEEecCCC--EEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCC
Q 004683 387 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~--~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~ 464 (737)
....|..++|.-|++ .+..++.|..+.......... +..+|+..+.. ....+|-.++..+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg 116 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADG 116 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCC
Confidence 356788888876654 455555666666555443222 12234433221 35667777777755
Q ss_pred EEEEEe-CCeEEEEECCCCc----EEEEecCCCCCeEEEEEcCCC--eEEEEECC--CeEEEEecCCCcEEEEEcCC---
Q 004683 465 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKGH--- 532 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~--~l~sgs~d--g~I~vwd~~~~~~~~~l~~~--- 532 (737)
.|++|- +|.+.+|....+. .+..+..+ .++..+.-++.. .+++|+.. ..+.+||+.+.+.+..-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 555555 9999999987543 22333333 345566666666 67779988 78999999987554433221
Q ss_pred ------CcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e
Q 004683 533 ------QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 603 (737)
Q Consensus 533 ------~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~ 603 (737)
.-.++++.|-+. ...+++++.-+.|++||.+.+ .+++..+.-.. .+++++...|+|++++++ .
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQFDFLE----NPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc----CcceeEecccc----CcceeeeecCCCcEEEEecc
Confidence 124567888887 789999999999999999974 35555444443 689999999999999997 7
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEE
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 664 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~ 664 (737)
-+.+..||++.++....... +..+.|+++..+|.++++++++-|..|||+|+.+.+++..
T Consensus 268 ~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 79999999999988777322 2589999999999999999999999999999999666544
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.8e-11 Score=133.87 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=140.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe----CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE-ECCC--eEEEEecC
Q 004683 452 PKDSISCFALR--GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDS--SILVHCPC 521 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg-s~dg--~I~vwd~~ 521 (737)
+...+.+.+|+ |+.|+..+ +..+++|++.+|+.... ....+.+....|+||| .|+.. +.+| .|++||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 56688999999 88887654 35799999988764332 2223334568999999 66644 4455 59999999
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC-Cc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d-g~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
+++... +..+...+....|+|||+.|+.++.+ +. |+++|+.++.. .. +... . .......|+|+|++
T Consensus 276 tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~---lt~~-~---~~~~~~~~SpDG~~ 344 (429)
T PRK03629 276 SGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QR---ITWE-G---SQNQDADVSSDGKF 344 (429)
T ss_pred CCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EE---eecC-C---CCccCEEECCCCCE
Confidence 887654 44345567889999999998877754 44 45556665422 11 2111 1 34557899999999
Q ss_pred EEE-Ee-c--CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe---EEEEEcCCCeeEEEEeccccc
Q 004683 599 LLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH---VKVFDTSTLELRCQINLTAYA 671 (737)
Q Consensus 599 l~~-~~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~---I~vwd~~~~~~~~~~~~~~~~ 671 (737)
++. +. + ..|++||+.++... .+.. ........|+|||++|+.++.++. ++++++. |.....+..+
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--- 416 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--- 416 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC---
Confidence 887 42 2 35899999887643 3432 122346789999999998887754 6777875 4444555422
Q ss_pred CCCCccCceeeEEEEEcc
Q 004683 672 QPGTISLELYPLVIAAHP 689 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp 689 (737)
.+.+. ..+|+|
T Consensus 417 -----~~~~~--~p~Wsp 427 (429)
T PRK03629 417 -----DGQVK--FPAWSP 427 (429)
T ss_pred -----CCCcC--CcccCC
Confidence 22333 788887
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=6.9e-12 Score=129.07 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=120.4
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEec----CCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-------------
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT------------- 522 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~------------- 522 (737)
+--+..|- -|.|.+.|....+..+.+. -....|+|+.|-|.+ .++++-.+|.+++||..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 33455565 6888888876532222221 223679999999987 888888999999997531
Q ss_pred -C--------------cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe
Q 004683 523 -K--------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 587 (737)
Q Consensus 523 -~--------------~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v 587 (737)
+ .++..+.--++.|+.++|+|||++||+.+.||.+||||..+.+... +....- +..
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg------~mkSYF---GGL 335 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG------VMKSYF---GGL 335 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH------HHHhhc---cce
Confidence 1 1111222234578899999999999999999999999999833211 222222 678
Q ss_pred EEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 588 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 588 ~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
.|++|||||++|++ |.|.-|.||.+..++.+..-. +|..+|..++|.
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 99999999999999 599999999999888877654 589999999998
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=5e-12 Score=121.84 Aligned_cols=153 Identities=10% Similarity=0.104 Sum_probs=109.3
Q ss_pred EEEEEeCCCCEEEEEeC----------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--E-e
Q 004683 537 TCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 603 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~----------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~-~ 603 (737)
..+.|+|+|++|++-.. -+...+|.++... .+...+..... ++|.+++|+|+|+.+++ + .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 45789999988765433 1234555553311 12222222222 57999999999998876 3 5
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
++.|.+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+.+..... .
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------~--- 144 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------S--- 144 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---------C---
Confidence 6799999996 77777663 4567899999999999988743 6799999998888776531 1
Q ss_pred eeEEEEEccCCCCEEEEEEC------CCcEEEEecCCCcee
Q 004683 681 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPLESEVE 715 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~------Dg~V~iWd~~~~~~~ 715 (737)
.++.++|+| ||++|++++. |+.++||+.. |+..
T Consensus 145 ~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 145 DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 145899999 8999999874 7889999994 5543
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=1.1e-11 Score=119.52 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=107.3
Q ss_pred EEEEcCCC-eEE-EEEC---------CCeEEEEecCC-CcEEEEEcC-CCcceEEEEEeCCCCEEEEE--eCCCcEEEEe
Q 004683 497 YFILLPQD-LFA-FGFD---------DSSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVWD 561 (737)
Q Consensus 497 ~~~~s~~~-~l~-sgs~---------dg~I~vwd~~~-~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~--s~dg~I~lwd 561 (737)
.+.|+|+| .|+ .... -+...+|.++. +..+..+.- ..++|.+++|+|+|+.+++. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 67899999 443 2221 12344554422 233444432 34579999999999987654 4578999999
Q ss_pred CCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE----ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc
Q 004683 562 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 637 (737)
++. ..+..+.. ..+..+.|+|+|++++++ ..|.|.+||.++.+.+.+.. ...++.++|||
T Consensus 90 ~~~------~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsP 153 (194)
T PF08662_consen 90 VKG------KKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSP 153 (194)
T ss_pred Ccc------cEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcC
Confidence 974 33443332 467899999999999984 24789999999888887763 33578999999
Q ss_pred CCCEEEEEec------CCeEEEEEcCCCeeEEEE
Q 004683 638 DGKCIYVSCK------SGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 638 ~~~~l~sgs~------dg~I~vwd~~~~~~~~~~ 665 (737)
||+++++++. |+.++||+.. |+.+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999998764 7889999985 6555554
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2e-11 Score=133.51 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=136.7
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
..|.++|.. |...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467778874 55555566677788999999999 77766643 369999999887643 3333455678999999998
Q ss_pred EE-EEeCCCcEEEEeC--CCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEE--eCCCCceeEE
Q 004683 548 LV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ 620 (737)
Q Consensus 548 l~-s~s~dg~I~lwdl--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iw--d~~~~~~~~~ 620 (737)
++ +.+.+|...+|.+ .++. ...+.. +. .......|+|||+.++. + .+|...+| ++.++.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~lt~-~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRLTQ-SS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEECCC-CC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 87 4567787666654 4422 222222 21 34567889999998886 4 33554555 5555543322
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
. .. .......+|||||++|+..+.++ .|++||+.+++... +.. .... ....|+| |++.|+.
T Consensus 324 t-~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~---------~~~~--~~p~~sp-dg~~l~~ 387 (427)
T PRK02889 324 T-FT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD---------TTRD--ESPSFAP-NGRYILY 387 (427)
T ss_pred e-cC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC---------CCCc--cCceECC-CCCEEEE
Confidence 2 11 23344688999999998776654 69999999887543 221 1112 2689999 7888777
Q ss_pred EECCC-c--EEEEec
Q 004683 698 GLTNG-R--VHVIEP 709 (737)
Q Consensus 698 ~s~Dg-~--V~iWd~ 709 (737)
++.++ . +.+-++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 76554 3 444444
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=1.2e-10 Score=119.51 Aligned_cols=323 Identities=10% Similarity=0.053 Sum_probs=211.6
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...+||.|.++++.... .|.+|.-.. ...+.++. ...|..+.|||.++||.+-+..+.+ +......+
T Consensus 37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~pe~e~sp 103 (561)
T COG5354 37 YVSESPLGTYLFSEHAA-GVECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EPEIEISP 103 (561)
T ss_pred heeecCcchheehhhcc-ceEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---ChhhccCC
Confidence 34489999999887654 478888664 34555543 3569999999999999998876553 11111111
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCC--eE-EEEEe--CCEEEEEeCCeEEEEECCCCcEE-EEec-CCCCCeE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDS--IS-CFALR--GSHLFSASGGKISIFSLETFQTL-ATFA-NPPPIAT 496 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~--V~-~v~~s--~~~l~s~sdg~i~vwd~~~~~~~-~~~~-~~~~~v~ 496 (737)
.+... .+.+||..+|.++.... +...+ .+ -+.|+ ++++|--....++|+++ ++... ..+. -....|.
T Consensus 104 ~~~~n---~~~vwd~~sg~iv~sf~--~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 104 FTSKN---NVFVWDIASGMIVFSFN--GISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred ccccC---ceeEEeccCceeEeecc--ccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcccccee
Confidence 11111 34689999988876544 22222 33 46777 55555555778999997 33221 1111 1135688
Q ss_pred EEEEcCCC---eEEE-----EECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe-----------CCCcE
Q 004683 497 YFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-----------ADAQL 557 (737)
Q Consensus 497 ~~~~s~~~---~l~s-----gs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s-----------~dg~I 557 (737)
...|+|.+ .|+. ++..+.+++|.+..+..+.+-.-....-..+.|++.|+++.+-. ....+
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 89999985 4442 45677999999887766554333333345788999998765421 12457
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEE
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~ 634 (737)
++++++.. .+. ...+.. ++|...+|.|.++.+++ | .+..+.++|++.. ....+ + ...-..+.
T Consensus 258 yl~~~~e~------~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-P---e~~rNT~~ 322 (561)
T COG5354 258 YLLRITER------SIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-P---EQKRNTIF 322 (561)
T ss_pred EEEeeccc------ccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEec-C---Cccccccc
Confidence 78887742 222 111222 78999999999988876 3 6789999999755 44333 2 34456788
Q ss_pred EccCCCEEEEEecC---CeEEEEEcCCCeeEE-EEecccccCCCCccCceeeEEEEEccCCCCEEEEEE------CCCcE
Q 004683 635 YSCDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TNGRV 704 (737)
Q Consensus 635 ~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s------~Dg~V 704 (737)
|||.+++++.++-| |.+-+||....-... .+.+ .+..-+.|+| |+.++-+.. .|..|
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEeec------------CCceEeeccC-CceEEEecCCCcccccCcce
Confidence 99999999987766 789999988765444 4432 1123678999 898887764 47889
Q ss_pred EEEecCCCc
Q 004683 705 HVIEPLESE 713 (737)
Q Consensus 705 ~iWd~~~~~ 713 (737)
+||++....
T Consensus 390 ~l~~v~g~~ 398 (561)
T COG5354 390 KLWDVYGAK 398 (561)
T ss_pred EEEEecCch
Confidence 999997553
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.6e-11 Score=130.10 Aligned_cols=195 Identities=15% Similarity=0.073 Sum_probs=137.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe----CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCC--eEEEEec
Q 004683 451 DPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg--~I~vwd~ 520 (737)
.|...+.+.+|+ |+.|+..+ +..|++||+.+++.. .+..+.+.+.+.+|+||| .|+ +.+.++ .|++||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 477789999999 88887765 358999999887653 444555667788999999 654 556565 4888899
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
.++.. ..+..+........|+|||+.++..+. +| .|++||+.++.. +.+..+. ..+....|+|+|+
T Consensus 278 ~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~lt~~~----~~~~~~~~SpdG~ 346 (435)
T PRK05137 278 RSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRISFGG----GRYSTPVWSPRGD 346 (435)
T ss_pred CCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEeecCC----CcccCeEECCCCC
Confidence 88765 445556666778999999999887764 33 588888876432 1122221 3466788999999
Q ss_pred EEEE-Ee-c--CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC------CeEEEEEcCCCee
Q 004683 598 HLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 661 (737)
Q Consensus 598 ~l~~-~~-d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d------g~I~vwd~~~~~~ 661 (737)
.++. +. . ..|.+||+..+. ...+.. ...+....|+|||++|+..+.+ ..++++|+.++..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 9987 32 2 368889986544 334432 2346788999999998765543 3688888877654
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.8e-11 Score=131.80 Aligned_cols=198 Identities=18% Similarity=0.134 Sum_probs=135.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCC--eEEEEec
Q 004683 451 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg--~I~vwd~ 520 (737)
.+...+.+.+|+ |+.|+..+ + ..|++||+.+++... +....+...+..|+||| .++ +.+.+| .|++||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 366778899999 88888776 2 469999998876543 33334445578999999 654 555555 6999999
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CCc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
.+++.. .+..+.......+|+|||+.++.++. +|. |+++|+.++.. ..+. ..+ .....++|+|+|+
T Consensus 280 ~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 348 (433)
T PRK04922 280 GSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT--FQG-----NYNARASVSPDGK 348 (433)
T ss_pred CCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee--cCC-----CCccCEEECCCCC
Confidence 988754 45555555677899999999887764 444 66677766432 1111 112 2344689999999
Q ss_pred EEEE-Eec-C--cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCCeeEEEE
Q 004683 598 HLLS-IHE-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQI 665 (737)
Q Consensus 598 ~l~~-~~d-g--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~~~ 665 (737)
+++. +.+ + .|.+||+.+++.. .+.. ........|+|||++++..+.+ +.|+++++..+ ....+
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence 9987 322 2 6999999887754 3332 2234567999999998876653 46888888644 34444
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7.8e-11 Score=128.95 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=137.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C--CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEE--ec
Q 004683 451 DPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVH--CP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vw--d~ 520 (737)
.+...+.+.+|+ |+.|+..+ + ..|++||+.+++... +....+.+.+.+|+||| .|+ +.+.++...+| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366788899999 88888776 2 369999999887643 33334456688999999 665 56677765555 55
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeC--CCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
.++. ...+..+........|+|||+.++..+. +|...+|.+ .++.. ..+. ..+ ......+|+|+|+
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK 340 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence 5554 4555555555677899999998886664 456666654 44221 1111 112 2334678999999
Q ss_pred EEEE-EecC---cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEEcCCCeeEEEEecccc
Q 004683 598 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 598 ~l~~-~~dg---~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~ 670 (737)
+++. +.++ .|.+||+.+++... +.. ........|+|||+.|+.++.++ .+++.++ +|.....+..+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~-- 413 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTA-LTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ-- 413 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEE-ccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--
Confidence 9986 4332 69999998877543 322 22346789999999998777553 3666666 35545544321
Q ss_pred cCCCCccCceeeEEEEEcc
Q 004683 671 AQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp 689 (737)
.+.+. ..+|+|
T Consensus 414 ------~g~~~--~p~wsp 424 (427)
T PRK02889 414 ------GGDVR--EPSWGP 424 (427)
T ss_pred ------CCCCC--CCccCC
Confidence 22233 678887
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=3.3e-09 Score=112.74 Aligned_cols=243 Identities=15% Similarity=0.167 Sum_probs=156.4
Q ss_pred CCeEEEEEe--CCEEEEEe-C----CeEEEEECCCC--c--EEEEecCCCCCeEEEEEcCCC-eEEEEE-CCCeEEEEec
Q 004683 454 DSISCFALR--GSHLFSAS-G----GKISIFSLETF--Q--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCP 520 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s-d----g~i~vwd~~~~--~--~~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~ 520 (737)
.....++++ +++|++.. . |.|..|++... + .+............++++|++ +++++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 445567787 77887776 3 58888887653 3 233333334455689999999 776665 5889999999
Q ss_pred CC-CcEEEE---Ec----------CCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCc--eeeceeeeecccCCCCC
Q 004683 521 CT-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 521 ~~-~~~~~~---l~----------~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~~~--~~~~~~~~~~~~~~~~~ 583 (737)
.. |..... +. .......++.++|+|+++++... ...|.+|++.... ......+. ++.+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G---- 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG---- 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT----
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC----
Confidence 86 443322 21 12345789999999998887654 4579999997643 22212222 3444
Q ss_pred CCCeEEEEEecCCCEEEE-E-ecCcEEEEeCC--CCc--eeEEecCC--C--CCCCeEEEEEccCCCEEEEEec-CCeEE
Q 004683 584 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLN--HTSQLVPD--K--MDLPITYATYSCDGKCIYVSCK-SGHVK 652 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~--~~~--~~~~~~~~--~--h~~~v~~~~~sp~~~~l~sgs~-dg~I~ 652 (737)
.....++|+|+|+++++ . .++.|.++++. ++. .+..+... . .......++++|||++|+++.. ++.|.
T Consensus 192 -~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 -SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred -CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 57899999999999987 4 67889999987 443 22222211 1 1236788999999999987664 57899
Q ss_pred EEEcC--CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE-CCCcEEEEecCC
Q 004683 653 VFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLE 711 (737)
Q Consensus 653 vwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~iWd~~~ 711 (737)
+|++. ++.+...-... .....+..++++| ++++|+++. .++.|.+|++..
T Consensus 271 vf~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeC
Confidence 99993 34433221110 1123356899999 788888776 567999998753
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.5e-10 Score=119.83 Aligned_cols=324 Identities=11% Similarity=0.054 Sum_probs=203.9
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.|||.|.+|++-...| |.+|--.. -..++++. | ..|..+.|||..+||+|-|..-.+.-|+-. .
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-----H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----e 280 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-----H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----E 280 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-----C-CCceeeecCCccceEEEecCCccccCcccC-----C
Confidence 34999999999987655 67886443 34555542 4 359999999999999998875443333311 1
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
|+ .+.+||+.+|.+......-.....++ -+.|| ++++|.-....|.||+..+...+..-.-.-.+|....|+
T Consensus 281 ~~-----~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 281 GQ-----QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred Cc-----eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccC
Confidence 11 22456666665544332101112222 35788 777777778899999987654443322334578899999
Q ss_pred CCC-eEEEEEC--C---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC----------CCcEEEEeCCCC
Q 004683 502 PQD-LFAFGFD--D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVGW 565 (737)
Q Consensus 502 ~~~-~l~sgs~--d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~----------dg~I~lwdl~~~ 565 (737)
|.+ .||-=+. + ..+.+..+-+++.+++-.-+.-.-..+-|-.+|.+|+.--. -..+-|+.++..
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 999 6663322 2 26777777777777766655544456778888888775321 123455655542
Q ss_pred ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--E--ecCcEEEEeCCC-C---ceeEEecCCCCCCCeEEEEEcc
Q 004683 566 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~--~dg~I~iwd~~~-~---~~~~~~~~~~h~~~v~~~~~sp 637 (737)
. .++..+.-. ..|...+|-|.|..+++ + ...++.+|.+++ . +.+..+ .....+.+.|+|
T Consensus 436 d----Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsP 502 (698)
T KOG2314|consen 436 D----IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSP 502 (698)
T ss_pred C----CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcC
Confidence 1 222211111 57889999999988886 3 335788998873 2 223333 145678899999
Q ss_pred CCCEEEEE---ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC------CCcEEEEe
Q 004683 638 DGKCIYVS---CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIE 708 (737)
Q Consensus 638 ~~~~l~sg---s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~V~iWd 708 (737)
.|++++.+ |..|.+.++|.........- +..+ -..+.+.|.| .|.|++|++. |..-+||+
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---------~~eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA---------SPEH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc---------Cccc-cccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 99999864 45789999998853322211 1111 1134799999 6999999875 45567888
Q ss_pred cCCC
Q 004683 709 PLES 712 (737)
Q Consensus 709 ~~~~ 712 (737)
.+-.
T Consensus 572 fqGr 575 (698)
T KOG2314|consen 572 FQGR 575 (698)
T ss_pred eecH
Confidence 7643
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=5e-11 Score=118.60 Aligned_cols=216 Identities=15% Similarity=0.120 Sum_probs=156.3
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEE-EECC--CcEEEeeccCCcccccccc
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s-~s~d--g~i~iWd~~~~~~~~g~~~ 428 (737)
..|+++-++|.+.+|....+........ .+. -..++..+.-+|..+++++ ||.. +.+.|||+....
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~-~la---~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------- 184 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLI-KLA---TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK------- 184 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccce-eee---cCCceeeeccCCCCCceEecCchhcccceeeeecccce-------
Confidence 3566778899999999874321111111 122 2356777887776665555 8888 899999998653
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-C---CEEEEEe-CCeEEEEECCCC-cEEEEecCCCCCeEEEEEcC
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 502 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~---~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~ 502 (737)
++|..+.-.--..-. .-.-+++++.|- | ..||++. -+.+++||+..+ +++..+..-..+++++...|
T Consensus 185 -----qiw~aKNvpnD~L~L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 185 -----QIWSAKNVPNDRLGL--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred -----eeeeccCCCCccccc--eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 366644321000000 122345567776 4 5788998 799999999864 57778887788999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEE-EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
++ .+++|...|.+..+|+++++.... +++..+.|+++..+|.+.++++++-|+.|||+|+.+.. .+....-.
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk-----ll~kvYvK- 331 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK-----LLHKVYVK- 331 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch-----hhhhhhhh-
Confidence 99 999999999999999999988766 88899999999999999999999999999999999832 23222222
Q ss_pred CCCCCCeEEEEEecC
Q 004683 581 VPETTIVNHIQFHPD 595 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~ 595 (737)
..++++.+.++
T Consensus 332 ----s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 ----SRLTFILLRDD 342 (412)
T ss_pred ----ccccEEEecCC
Confidence 45667777654
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=3.9e-10 Score=123.85 Aligned_cols=210 Identities=17% Similarity=0.122 Sum_probs=140.7
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
..|.++|... ...+.+..+...+.+..|+||| .++.++.+ ..|++||+.+++... +..+...+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 3688888764 3345555566678899999999 77766644 479999999886543 3335566778999999997
Q ss_pred EEEE-eCCC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecC--cEEEEeCCCCceeEE
Q 004683 548 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQ 620 (737)
Q Consensus 548 l~s~-s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg--~I~iwd~~~~~~~~~ 620 (737)
++.. +.++ .|++||+.++.. ..+... . .......|+|+|+.|+. + ..+ .|+++|+.+++.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~------~~l~~~-~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL------TRLTNG-P---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE------EECCCC-C---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 7654 4444 588899887432 112221 1 23456789999998876 3 223 6888898776643 3
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+.. +...+..+.|+|+|++++.++.++ .|++||+.++.... +... . .. ...+|+| |+.+|+.
T Consensus 317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~--------~-~~--~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT--------G-LD--ESPSFAP-NGRMILY 381 (417)
T ss_pred eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC--------C-CC--CCceECC-CCCEEEE
Confidence 322 245567889999999999888776 89999998865432 2210 1 11 2568999 7887777
Q ss_pred EECCC---cEEEEec
Q 004683 698 GLTNG---RVHVIEP 709 (737)
Q Consensus 698 ~s~Dg---~V~iWd~ 709 (737)
++.++ .+.+.+.
T Consensus 382 ~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 382 ATTRGGRGVLGLVST 396 (417)
T ss_pred EEeCCCcEEEEEEEC
Confidence 76654 3445453
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.1e-09 Score=114.11 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=187.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-----CC-----CcEEEee
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-----QT-----ATHKLWK 416 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s-----~d-----g~i~iWd 416 (737)
+|++|+++|.+. +..++|++.... . .... .. ...+.++.|||-|.||.+-- .+ -.+.+|+
T Consensus 42 ~S~~G~lfA~~~-~~~v~i~~~~~~---~-~~lt-~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 42 YSNNGRLFAYSD-NQVVKVFEIATL---K-VVLC-VE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred EcCCCcEEEEEc-CCeEEEEEccCC---c-EEEE-ec----cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 788888888765 567788887742 1 1111 21 23789999999999987621 12 3467999
Q ss_pred ccCCcc--------cc------------cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-C---CEEEEEe--
Q 004683 417 WQSNKQ--------SL------------EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-- 470 (737)
Q Consensus 417 ~~~~~~--------~~------------g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~---~~l~s~s-- 470 (737)
+.++.. .. +.....-.+.+|+..+-......+ |...|+.+.+| | ..+|+--
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl---~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL---SVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee---eccceeeEEecCCCCCceEEEEccC
Confidence 887332 00 001111234667766543333222 67888889998 4 2444421
Q ss_pred -C---CeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCC--eEEE--EECCC---------eEEEEecCCCcEEEEEc
Q 004683 471 -G---GKISIFSLETFQTLATFA---NPPPIATYFILLPQD--LFAF--GFDDS---------SILVHCPCTKKTKAKLK 530 (737)
Q Consensus 471 -d---g~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~--~l~s--gs~dg---------~I~vwd~~~~~~~~~l~ 530 (737)
+ +.|++|.......-..+. -....-..+.|++-| .|+. ..-|. +++++++++..+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 2 579999876322211110 011122367888877 3333 33333 68888888545555554
Q ss_pred CCCcceEEEEEeCCCCEEEE--EeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E---ec
Q 004683 531 GHQNRITCLAYSLSLNVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HE 604 (737)
Q Consensus 531 ~~~~~v~~l~~sp~g~~l~s--~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~---~d 604 (737)
..++|.++.|+|+|+-+++ |-.=..+.+||++. .++..+.. ++=+++-|+|.|++++. | -.
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLP 335 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCC
Confidence 4799999999999987554 45567899999997 45554554 46678999999999886 4 35
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEEcCCCeeEE
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRC 663 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~------dg~I~vwd~~~~~~~~ 663 (737)
|.|-+||+.+.+++..+.. ..-+-+.|+|||.++++++. |+.++||+... ..+.
T Consensus 336 G~mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~ 395 (566)
T KOG2315|consen 336 GDMEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLH 395 (566)
T ss_pred CceEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceee
Confidence 8999999999888887754 33556899999999998775 78899999764 4343
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.4e-09 Score=119.67 Aligned_cols=212 Identities=14% Similarity=0.052 Sum_probs=138.7
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
.|.++|.+.+. .+.+..+...+....|+||| .|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47788877444 45555666778899999999 77765543 369999999886543 33334455678999999988
Q ss_pred EE-EeCCC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ec--CcEEEEeCCCCceeEEe
Q 004683 549 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 549 ~s-~s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~d--g~I~iwd~~~~~~~~~~ 621 (737)
+. .+.+| .|++||+.++.. ..+... . .......|+|+|+.++. + .+ ..|+++|+.+++.....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~------~~lt~~-~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL------SRVTNH-P---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe------EEcccC-C---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 74 44455 588889987532 112221 1 34557889999998876 3 23 36888898877754322
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
.. ........|+|||++|+..+.+ + .|++||+.+++... +.. + .. .. ...|+| ||..++..
T Consensus 328 ~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~------~--~~-~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 328 FV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD------T--SL-DE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred cC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 11 2233467899999999876643 3 58899999886533 221 1 11 11 468999 78887766
Q ss_pred ECC-C--cEEEEecCCC
Q 004683 699 LTN-G--RVHVIEPLES 712 (737)
Q Consensus 699 s~D-g--~V~iWd~~~~ 712 (737)
+.+ | .+.++++..+
T Consensus 392 ~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 392 TRQQGRGVLMLVSINGR 408 (430)
T ss_pred EecCCceEEEEEECCCC
Confidence 544 3 4666676433
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.9e-10 Score=127.72 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=145.9
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe----EEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v----~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
...++.+. +..+.+||...+............. .-+.++++. ++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 56666666 8999999998877776665443321 122345666 99999999999999987433333688999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 615 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~ 615 (737)
.++.++-||+++++.|.|.++|+|++.+.+... ...-+|+ ..|..++|+|+ .+++ +.|.+.++|+. ++
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 999999999999999999999999999854322 1334676 89999999998 6666 79999999977 46
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
..+.++..+ ....+..++..++...+++++.||.+++|++..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 666677653 377899999999999999999999999999764
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=7.7e-10 Score=108.44 Aligned_cols=232 Identities=13% Similarity=0.138 Sum_probs=153.9
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
.-|...-+.+.+.|.+++||--.+ .++.-.-.. +.-..++.+++++++...|+.|-..|++.-+.+...
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrd---s~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed------ 100 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRD---SGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED------ 100 (404)
T ss_pred eccCCCCeEEccccceeeeEEecc---ccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh------
Confidence 345556688999999999996443 222111000 113578999999999999999999999987765531
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 503 (737)
.+......... .|...|..+-|+ ..++++++ |..+.---.+.+..+..+.- .+.+..++
T Consensus 101 -----------fnkm~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~ 162 (404)
T KOG1409|consen 101 -----------FNKMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQ 162 (404)
T ss_pred -----------hhhcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCCc
Confidence 11111222222 699999999999 77888888 65554333344443332210 00010111
Q ss_pred C---eEEEEECCCeEEEEec--CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc
Q 004683 504 D---LFAFGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 504 ~---~l~sgs~dg~I~vwd~--~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
- +...|...|.|.+..+ ..-..+.++.+|.+.+.+++|.|....+.+|..|..+.+||+-.... +.-...
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~~el~ 237 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TAYELQ 237 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----eeeeec
Confidence 1 3445666666655443 34467888999999999999999999999999999999999986322 111234
Q ss_pred CCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC
Q 004683 579 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 615 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~ 615 (737)
+|. ..|..+...+.-+.+.+ +.||.|.+|+++..
T Consensus 238 gh~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 GHN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cch---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 555 67888887777777777 59999999998643
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=3.3e-09 Score=116.54 Aligned_cols=226 Identities=14% Similarity=0.105 Sum_probs=142.1
Q ss_pred eEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEeeccCCcccccccceeeeeEEeec
Q 004683 362 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQP 438 (737)
Q Consensus 362 ~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d---g~i~iWd~~~~~~~~g~~~~~~~~~l~~~ 438 (737)
.|.++|..+ ...+.+ .. +...+...+|||||++|+.++.+ ..|.+|++.+
T Consensus 171 ~l~~~d~~g----~~~~~l--~~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~------------------- 223 (417)
T TIGR02800 171 ELQVADYDG----ANPQTI--TR--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT------------------- 223 (417)
T ss_pred eEEEEcCCC----CCCEEe--ec--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-------------------
Confidence 467777653 223332 22 45679999999999999988754 3566666553
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-e-CC--eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC
Q 004683 439 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 511 (737)
Q Consensus 439 ~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~-s-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~ 511 (737)
+...... .+...+.+++|+ |+.|+.. + ++ .|++||+.++... .+..+........|+|+| .|+..+.
T Consensus 224 --g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 224 --GQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred --CCEEEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 3221111 244556678898 6766544 3 33 6999999877543 344444445577899999 7766554
Q ss_pred C-C--eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeeceeeeecccCCCCCCC
Q 004683 512 D-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 512 d-g--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg---~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
. + .|+++|+.+++.. .+..+...+....|+|+|++++.++.++ .|.+||+.++.. ..+... .
T Consensus 298 ~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~------~~l~~~-----~ 365 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE------RVLTDT-----G 365 (417)
T ss_pred CCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe------EEccCC-----C
Confidence 3 3 6888898877643 3443455677889999999999888776 788999887321 112221 1
Q ss_pred CeEEEEEecCCCEEEE-Eec---CcEEEEeCCCCceeEEecCCCCCCCeEEEEE
Q 004683 586 IVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATY 635 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~-~~d---g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 635 (737)
......|+|+|++|+. +.+ ..+++.+. ++.....+.. ..+.+..++|
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~--~~g~~~~~~w 416 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPL--GNGDVREPAW 416 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCC--CCCCcCCCCC
Confidence 2345689999998887 332 24666665 4555454533 1344444444
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=9.1e-08 Score=99.38 Aligned_cols=268 Identities=14% Similarity=0.095 Sum_probs=161.9
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEeeccCCccccccccee
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 430 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~----------dg~i~iWd~~~~~~~~g~~~~~ 430 (737)
++|.+.|... .+.... ++. ...-..+ +||||+.|+.+.. +..|.+||..+..
T Consensus 27 ~~v~ViD~~~----~~v~g~-i~~---G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--------- 88 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGM-TDG---GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--------- 88 (352)
T ss_pred ceEEEEECCC----CEEEEE-EEc---cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc---------
Confidence 7899999884 333322 221 1122234 9999998888776 6778777766433
Q ss_pred eeeEEeecCCCeeeeeccCCC-----CCCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 431 MESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 431 ~~~~l~~~~~~~~~~~~~~~~-----h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
.+..+.... .......++++ |++++... +..|.+.|+.+++.+..+.-.. ...-...
T Consensus 89 ------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t 155 (352)
T TIGR02658 89 ------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT 155 (352)
T ss_pred ------------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe
Confidence 222211100 11223356777 88888766 5899999999999998886432 2222222
Q ss_pred cCCCeEEEEECCCeEEEEecCC-CcEE-E---EEcCCCcceE-EEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 501 LPQDLFAFGFDDSSILVHCPCT-KKTK-A---KLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 501 s~~~~l~sgs~dg~I~vwd~~~-~~~~-~---~l~~~~~~v~-~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
++++.. +-+.||......+.+ |+.. . .+.+...++. .-.|.+ +|+++.+... |+|.+.|+...........
T Consensus 156 ~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 156 ANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred cCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 222211 222344433322221 2211 1 1111001110 003455 7877776665 9999999765433333333
Q ss_pred eeccc-----CCCCCCCCeEEEEEecCCCEEEE-E--ec--------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc
Q 004683 574 HSFQT-----GLVPETTIVNHIQFHPDQIHLLS-I--HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 574 ~~~~~-----~~~~~~~~v~~l~~sp~g~~l~~-~--~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 637 (737)
..+.. +-.+ +.+.-++++|+++.+++ . .. +.|.++|..+++.+..+.. ...+.+++++|
T Consensus 234 ~~~~~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~ 308 (352)
T TIGR02658 234 EAFTEAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQ 308 (352)
T ss_pred eeccccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECC
Confidence 32111 1111 44556999999988887 3 12 4799999999999998865 56899999999
Q ss_pred CCC-EEEEEe-cCCeEEEEEcCCCeeEEEEe
Q 004683 638 DGK-CIYVSC-KSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 638 ~~~-~l~sgs-~dg~I~vwd~~~~~~~~~~~ 666 (737)
|++ +|++.+ .++.|.++|..+++.+..+.
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999 888766 57889999999999988873
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.2e-09 Score=116.60 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=132.8
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-CC--eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
.+.++|..... .+.+..+...+.+..|+||| .|+..+. ++ .|++||+.+++... +....+.....+|+|||+.+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 67777875443 34555566678899999999 7776543 33 68999998876533 32223344578999999987
Q ss_pred EE-EeCCCc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ec--CcEEEEeCCCCceeEEe
Q 004683 549 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 549 ~s-~s~dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~d--g~I~iwd~~~~~~~~~~ 621 (737)
+. .+.+|. |++||+.+++. ..+... . ......+|+|||+.++. + .+ ..|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~------~~lt~~-~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL------TRITRH-R---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe------EECccC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 65 455664 77788877432 212222 1 34567899999998886 3 23 357788887776543 2
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
... .......+|+|||++|+..+.+ + .|.++|+.+++... +.. + .. . ....|+| |+..|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~~-d--~~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--RL-D--ESPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--CC-C--CCceECC-CCCEEEEE
Confidence 211 2223457899999998876553 3 56667888876532 221 1 11 1 1458999 77777665
Q ss_pred EC-CCc--EEEEec
Q 004683 699 LT-NGR--VHVIEP 709 (737)
Q Consensus 699 s~-Dg~--V~iWd~ 709 (737)
+. +|. +.+++.
T Consensus 411 ~~~~g~~~l~~~~~ 424 (448)
T PRK04792 411 TTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEEC
Confidence 54 443 666676
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=9.7e-09 Score=111.07 Aligned_cols=274 Identities=12% Similarity=0.048 Sum_probs=170.8
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 478 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd 478 (737)
+..+++++.+|.+..+|..+++. +|..+.+... ...+...++.++.++ +|.++.+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~~-----------~~~p~v~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR------------LWRVDLDERL-----------SGGVGADGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE------------eeeecCCCCc-----------ccceEEcCCEEEEEcCCCEEEEEE
Confidence 56788888899998888775443 5654433210 112333466677776 99999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceE-----EEEEeCCCCEEEEEeC
Q 004683 479 LETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-----CLAYSLSLNVLVSSGA 553 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~-----~l~~sp~g~~l~s~s~ 553 (737)
..+|+.+............... .++.++.++.++.+..||.++|+.+..+......+. +.... +..++.++.
T Consensus 122 ~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~ 198 (377)
T TIGR03300 122 AEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA 198 (377)
T ss_pred CCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC
Confidence 9999988776533221111111 233677778899999999999998776654322111 11111 246778888
Q ss_pred CCcEEEEeCCCCceeeceeeeecccCCCCCCCC---e-EEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCC
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 629 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~---v-~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~ 629 (737)
++.+..+|.++++........ ...+... ... + .+..+. ++..++++.+|.++.||..+|+.+...... .
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~ 271 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS----S 271 (377)
T ss_pred CCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC----C
Confidence 999999999887644322221 0111000 000 0 111122 333334468899999999999877655321 1
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 630 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 630 v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
.... ..++..+++++.||.++.+|..+|+.+...... + ..... .... .+..+++++.+|.|++||.
T Consensus 272 ~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 272 YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1112 235678888889999999999999988765321 0 11111 1111 2468888999999999999
Q ss_pred CCCceeeeecC
Q 004683 710 LESEVEWGKLP 720 (737)
Q Consensus 710 ~~~~~~w~~~~ 720 (737)
.+++..|....
T Consensus 338 ~tG~~~~~~~~ 348 (377)
T TIGR03300 338 EDGSFVARLKT 348 (377)
T ss_pred CCCCEEEEEEc
Confidence 99999997754
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=9.1e-10 Score=116.84 Aligned_cols=296 Identities=11% Similarity=0.107 Sum_probs=187.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
.....|++|+....|+|+||.||.++|-.+.+... ++.... +-.+.+-.+-+. ..||+..|.-+.|+ .+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-d~~~~g-----laa~snLsmNQt--LeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-DLNKSG-----LAAASNLSMNQT--LEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC-cccccc-----cccccccchhhh--hccCcceEEEEEecccccc
Confidence 46789999999999999999999999998876433 111110 000011111122 23899999999999 555
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE-EEEcCCCcceEEEE
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA 540 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~-~~l~~~~~~v~~l~ 540 (737)
|-+.. +|.|.||-+-.|.....+. ...+.|.+++|+.|| .++....||.|.+=.++..+.- +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 66655 8999999987765444332 334578899999999 9999999999988777654332 22332 2244788
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCcee--eceeeeecccCCCCCCCCeEEEEEe--------cCCCEEEEE-ecCcEEE
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKL--CSKFLHSFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEGQIDV 609 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s--------p~g~~l~~~-~dg~I~i 609 (737)
|++|.+.++.+-.+|.+.+||....-.. ...+........+.....|..+.|. |+...++++ .+|.+.|
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9999999888889999999998753111 0111000111111000235555554 567778887 6688877
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---------g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
..-.+......+.. .-.+..+.|+++|..|++++.+ +.|.+|. .-|+.+..+... +..
T Consensus 244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvp--------g~~- 310 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVP--------GSC- 310 (1189)
T ss_pred hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecC--------Cce-
Confidence 76544332223322 4678899999999999998864 2444444 234555555432 222
Q ss_pred eeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 681 YPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
+++++|-. .|-.+|.+ .|+.|.+=++
T Consensus 311 -It~lsWEg-~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 311 -ITGLSWEG-TGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred -eeeeEEcC-CceEEEEE-ecceEEEEee
Confidence 44888876 45455544 4666666555
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=2.5e-10 Score=126.82 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=144.3
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc----ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~----~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
+. .++.++.+..+.+||...+........... ...-+-++++.-++++|+.-+.|.+|+.... ..+. ..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d----n~p~--~l 171 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED----NKPI--RL 171 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc----CCcc--ee
Confidence 44 788888899999999887766655543211 1112334666678999999999999998742 1222 35
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
.+|. +.|.++.++.||+++++ +.|.++++|++.+.+.... ..-+|...|+.++|.|+ .++++++|.+.++|+.
T Consensus 172 ~GHe---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 172 KGHE---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cccC---CceEEEEEccCCcEEEEEecCcceeeeecccccccCc-ccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 6787 89999999999999998 7999999999999877652 22358999999999999 9999999999999976
Q ss_pred CCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 657 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
...++ ..+. +|....++ .++.++ +....+|++.||.+++|+....
T Consensus 246 ~~~~l-~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 NGTQL-EVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cccee-hhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 65443 3554 33355567 888888 7889999999999999999764
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.7e-09 Score=113.77 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=131.8
Q ss_pred CCCeEEEEEecCCCEEE---EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 388 GGRVVRLIYSHSGDFLV---ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~---s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
...+..-+|||||+.++ +...+|.-.||- .+..+|...... ...+.....+|+
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~-------------------~~l~~g~~~~lt---~~~g~~~~p~wSPD 241 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFL-------------------GSLENPAGKKIL---ALQGNQLMPTFSPR 241 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEE-------------------EECCCCCceEee---cCCCCccceEECCC
Confidence 45667889999998532 333455444442 333333322211 123344567899
Q ss_pred CCEEEEEe--CC----eEEEEECCCC---cEEEEecCCCCCeEEEEEcCCC-eEEEEE-CCCe--EEEEecCC-CcEEEE
Q 004683 463 GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKTKAK 528 (737)
Q Consensus 463 ~~~l~s~s--dg----~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~--I~vwd~~~-~~~~~~ 528 (737)
|+.|+..+ +| .+..|++.++ +..+....+.......+|+||| .|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 87877665 23 3444777653 3333333333344678999999 766555 4564 44445542 233444
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E--
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-- 602 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~d---g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-- 602 (737)
+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.. . +..+. ..+....|+|||+.|+. +
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~~----~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTSP----ENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCCC----CCccceEECCCCCEEEEEECC
Confidence 55455567788999999998877653 36899999885421 1 22221 34667999999998885 3
Q ss_pred -ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC
Q 004683 603 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 603 -~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
....|+++|+..++....... .+.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence 235799999987765444322 4556778888753
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=9.7e-08 Score=95.28 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CeEEEEECCC--CcEEE--EecCCCCCeEEEEEcCCC-eEEEEEC-CCeEEEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGFD-DSSILVH 518 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-d---g~i~vwd~~~--~~~~~--~~~~~~~~v~~~~~s~~~-~l~sgs~-dg~I~vw 518 (737)
...+.++-++|+ ++.|.++. + |.|..|.++. |+... ........-+.++++++| +++++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 366778889999 66788776 3 6777777654 54322 122222333789999999 7776665 5689999
Q ss_pred ecCC-CcEE---EEEcCCCcc----------eEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeceeeeecccCCCCC
Q 004683 519 CPCT-KKTK---AKLKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 519 d~~~-~~~~---~~l~~~~~~----------v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 583 (737)
-++. |... ..+ .|.+. +....+.|+++++++.+- -..|.+|++..+......+.. +..+
T Consensus 117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G---- 190 (346)
T COG2706 117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG---- 190 (346)
T ss_pred EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC----
Confidence 8865 4332 222 25444 888999999999888764 347999999976654444443 3444
Q ss_pred CCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCC-c---eeEEecC--CC--CCCCeEEEEEccCCCEEEEEec-CCeEE
Q 004683 584 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-N---HTSQLVP--DK--MDLPITYATYSCDGKCIYVSCK-SGHVK 652 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~-~---~~~~~~~--~~--h~~~v~~~~~sp~~~~l~sgs~-dg~I~ 652 (737)
.....|+|+|++++..+ + -+++|.+|..... . .++++.. .+ .......+..+|||++|+++.. ...|-
T Consensus 191 -~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 -AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred -CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 56889999999999887 5 6899999998763 2 2222211 01 1456677889999999998765 35788
Q ss_pred EEEcCC--CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC-CcEEEEecCCCceeeee
Q 004683 653 VFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESEVEWGK 718 (737)
Q Consensus 653 vwd~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~V~iWd~~~~~~~w~~ 718 (737)
+|.+.. +++.. .... + .....+....++| ++++|++++.+ ..|.+|.+.........
T Consensus 270 ~f~V~~~~g~L~~-~~~~---~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 270 VFSVDPDGGKLEL-VGIT---P----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEEcCCCCEEEE-EEEe---c----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 887764 33222 1110 0 1223355889999 78888888765 47889888765544433
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=3.3e-08 Score=106.95 Aligned_cols=296 Identities=10% Similarity=0.047 Sum_probs=179.9
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeE-EEEEecCCCEEEEEECCCcEEEeeccCCccccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 427 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~-~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~ 427 (737)
.++..+++++.++.+.-+|..++ ...-...+.+ .+. ... .++..++.++.++.+..+|..+++.
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG---~~~W~~~~~~-----~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~----- 127 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETG---KRLWRVDLDE-----RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKE----- 127 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCC---cEeeeecCCC-----CcccceE--EcCCEEEEEcCCCEEEEEECCCCcE-----
Confidence 35678888888999999997742 2222322332 111 111 2567788888899999888765443
Q ss_pred ceeeeeEEeecCCCeeeeeccCCCCCCCeEE-EEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeE-----EEEE
Q 004683 428 NVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-----YFIL 500 (737)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~-v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~ 500 (737)
+|....+ ..+.+ ....++.++.+. +|.++.||..+|+.+..+......+. +...
T Consensus 128 -------~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 128 -------LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred -------eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 4553322 11211 122355566666 89999999999998887754332211 1111
Q ss_pred cCCCeEEEEECCCeEEEEecCCCcEEEEEcCCC----cc---eEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeece
Q 004683 501 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ----NR---ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 501 s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~----~~---v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
.++.++.+..++.+..+|.++|+.+....... .. ...+.-+| .+..+++++.+|.++.||..+++.....
T Consensus 189 -~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 189 -ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred -ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 12367788889999999999998765432110 00 00011111 3457888888999999999987543322
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
.. ........ .+..+++ +.+|.++.+|..+++.+....... .....+... .+..|++++.+|.
T Consensus 268 ~~-----------~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 268 DA-----------SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred cc-----------CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCE
Confidence 11 11112222 3445555 588999999999998776552211 112222222 4678999999999
Q ss_pred EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE
Q 004683 651 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 707 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW 707 (737)
|+++|..+|+.+.++..+ ...+. ...++. + +.|..++.||.|..|
T Consensus 332 l~~~d~~tG~~~~~~~~~--------~~~~~-~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTD--------GSGIA-SPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcC--------CCccc-cCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999888643 11121 122222 3 357788899998876
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=5.4e-09 Score=114.86 Aligned_cols=211 Identities=10% Similarity=0.013 Sum_probs=130.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECC-Cc--EEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQT-AT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~d-g~--i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s- 462 (737)
+...+.+..|||||+.|+..+.+ +. |.+||+ .++....... ........+|+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl---------------------~tg~~~~lt~---~~g~~~~~~wSP 271 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI---------------------YTQVREKVTS---FPGINGAPRFSP 271 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEEC---------------------CCCCeEEecC---CCCCcCCeeECC
Confidence 46788999999999999887653 33 444444 3333222111 12223467898
Q ss_pred -CCEEEEE-e-CC--eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-CC--eEEEEecCCCcEEEEEcCCC
Q 004683 463 -GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 463 -~~~l~s~-s-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg--~I~vwd~~~~~~~~~l~~~~ 533 (737)
|+.|+.. + +| .|+++|+.+++.. .+..+.......+|+||| .++..+. ++ .|+++|+.+++... +....
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 7777654 3 55 4888899877653 444444556778999999 6655443 33 57777888776543 22122
Q ss_pred cceEEEEEeCCCCEEEEEeCC-C--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecC--c
Q 004683 534 NRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--Q 606 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~d-g--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg--~ 606 (737)
......+|+|||++++..+.+ + .|.++|+.++.. ..+.... ......|+|+|+.++. + .++ .
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------~~lt~~~-----~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------QVLTSTR-----LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------EEccCCC-----CCCCceECCCCCEEEEEEecCCceE
Confidence 233457899999998876653 3 456678777432 1122211 1224579999999886 3 333 4
Q ss_pred EEEEeCCCCceeEEecCCCCCCCeEEEEEcc
Q 004683 607 IDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 637 (737)
+++++. +|.....+.. +.+.+...+|||
T Consensus 419 l~~~~~-~G~~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcC--CCCCcCCCccCC
Confidence 788887 5665555543 245677788887
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=5.2e-09 Score=115.23 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=129.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCC--eEEEEec
Q 004683 451 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg--~I~vwd~ 520 (737)
.+...+...+|+ |+.|+..+ + ..|.+||+.+++... +....+.+....|+||| .|+ +.+.+| .|++||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366778899999 88887766 2 369999998886543 33333345578999999 665 455555 6888999
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
.+++.. .+..+........|+|||+.++..+. +| .|+++|+.+++.. .+. ..+ .......|+|+|+
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt--~~~-----~~~~~~~~Spdg~ 343 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT--FVG-----NYNARPRLSADGK 343 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee--cCC-----CCccceEECCCCC
Confidence 987654 45545556677899999998877664 33 5777788765421 111 111 2234678999999
Q ss_pred EEEE-E-ecC--cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCC
Q 004683 598 HLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 659 (737)
Q Consensus 598 ~l~~-~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~ 659 (737)
.++. + .++ .|.+||+.+++.. .+.. ........|+|||++++..+.+ ..++++++..+
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEE-EccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9987 3 233 5889999887653 3322 1122356899999999876654 35777777543
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=2.8e-08 Score=101.39 Aligned_cols=169 Identities=13% Similarity=0.111 Sum_probs=131.3
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCC-eEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg-~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
|++++..+.|...+.+...+-.++. ++.+.|.-..+..++ .++.|..|| .+-++|.++++. +.+...-+.|.++.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~ 408 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK 408 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence 9999999999999988776655543 667778888888888 899999999 899999987764 45555678899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-----ecCcEEEEeCCCC
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTL 615 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-----~dg~I~iwd~~~~ 615 (737)
.+|+|++++.+.....+.+.|+.++.. +. +..... +-|+.+.|||+++++|-+ ....|+++|+.++
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv---~~---idkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNV---RL---IDKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCe---eE---eccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999999999999999999999998642 11 223333 689999999999999964 3457999999888
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+......+ ...=.+-+|.||+++|+--+
T Consensus 480 Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTTP---TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCC---cccccCcccCCCCcEEEEEe
Confidence 77665543 23334567777777766433
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.5e-09 Score=113.87 Aligned_cols=220 Identities=10% Similarity=0.028 Sum_probs=134.7
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-e--EE-EEECCC--eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~--l~-sgs~dg--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
.|.+.|.+.+.. +.+......+.+-.|+||| . ++ +...+| .|++.++.+|+... +....+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 577777764443 4444444556678999998 4 32 344443 68888998876443 322344556789999999
Q ss_pred EEEEEeC-CC----cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCc--EEEEeCCC-Cc
Q 004683 547 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 616 (737)
Q Consensus 547 ~l~s~s~-dg----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~--I~iwd~~~-~~ 616 (737)
.|+..+. +| .+..|++..+.. ....+ +..+.. ......+|+|||+.|+. + .+|. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 8887653 22 344467664211 11111 222221 23457899999998886 4 4554 55555542 22
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
....+.. +...+....|||||++|+..+.+ ..|++||+.+++....... ...+ ....|+| |++
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---------~~~~--~~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---------PENK--ESPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---------CCCc--cceEECC-CCC
Confidence 2333432 23466788999999998866543 4799999999876433211 1122 3789999 788
Q ss_pred EEEEEEC---CCcEEEEecCCCce
Q 004683 694 RIALGLT---NGRVHVIEPLESEV 714 (737)
Q Consensus 694 ~las~s~---Dg~V~iWd~~~~~~ 714 (737)
.|+..+. .+.|.+|++..++.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCE
Confidence 7765433 34688889877653
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=1.1e-07 Score=112.03 Aligned_cols=352 Identities=12% Similarity=0.140 Sum_probs=203.1
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
.....+.+|...+..+..+|.|.+...+.......+..... -..+|.+++||||+..|+.++.++++.+-+..-..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 34455788999999999999998883321111233332211 25789999999999999999999988775422111
Q ss_pred c--------cccc-cceeeeeEEeecC-------CCeee-----e-------eccCCCCCCCeEEEEEe--CCEEEEEe-
Q 004683 422 Q--------SLEE-ENVNMESQLYQPS-------SKLVM-----T-------NDIAADPKDSISCFALR--GSHLFSAS- 470 (737)
Q Consensus 422 ~--------~~g~-~~~~~~~~l~~~~-------~~~~~-----~-------~~~~~~h~~~V~~v~~s--~~~l~s~s- 470 (737)
. ..|. ...++ =|..+ .|+.. . .-... +.+.-..++|- |.++|+.+
T Consensus 154 i~E~~l~~~~~~~~~~VsV---GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSV---GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred EEEeecCccccCCCceeee---ccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 0 0010 00000 02211 11100 0 00001 33455578888 88988876
Q ss_pred C------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCCcEEEEEc----CCCcce
Q 004683 471 G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK----GHQNRI 536 (737)
Q Consensus 471 d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~~~~~~l~----~~~~~v 536 (737)
+ ..++||+-+ |....+-+...+--.+++|.|.| .||+... ...|.+|. ++|-.-..|. .....|
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCcee
Confidence 2 369999976 66554444444444688999999 8887765 34677777 3444333332 345689
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCcEEEEeC--
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEA-- 612 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~I~iwd~-- 612 (737)
..+.|++|+..|+....|. |.+|-..+..-.-+..+. +... ..+..+.|+|... .|.+ +.+|.+..++.
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~-----~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSS-----ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCC-----CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 9999999999999977665 999988874433333333 2222 3455588998653 3333 34465544432
Q ss_pred --CCCc--------eeEEecC--------------C-------CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 613 --PTLN--------HTSQLVP--------------D-------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 613 --~~~~--------~~~~~~~--------------~-------~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
..+. .+..+.+ + .-..+|.+++|++++..+++-..||.|.+|.......
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~ 460 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNM 460 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCc
Confidence 1110 1111110 0 1267899999999998899999999999998654332
Q ss_pred E--------EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC---CcEEEEecCC
Q 004683 662 R--------CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLE 711 (737)
Q Consensus 662 ~--------~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D---g~V~iWd~~~ 711 (737)
. ..+...................++|.. +..+++....+ +.+.+++...
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 461 WSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEecc
Confidence 1 111110000000001112244788877 45555555544 5788888743
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.6e-09 Score=113.77 Aligned_cols=198 Identities=14% Similarity=0.077 Sum_probs=146.9
Q ss_pred ecCCCEEEEEECCCcEEEeeccCCcc-----cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----CC-E
Q 004683 397 SHSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GS-H 465 (737)
Q Consensus 397 spdg~~L~s~s~dg~i~iWd~~~~~~-----~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~-~ 465 (737)
.|.+.|+|....||.++||+...++. |..+...+.....|...-+. ..-...+..+- +. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~---------s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY---------SPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc---------chHHHHhHHHHhhccCCceE
Confidence 45678999999999999999887655 22222222222234311100 00111111111 23 3
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEE
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~ 541 (737)
++-|. .|.|.+|++..|+....+. +|.+.|.++.++.+- .|.+++.|+.+..|+...++.++.+++.+..+.+++.
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 45555 7999999999999888876 789999999998888 9999999999999999999999999998999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC-----CCEEEEE--ecCcEEEEeCCC
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT 614 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~~~--~dg~I~iwd~~~ 614 (737)
+|||..+++++ +.|++||+++. +.+. .+.||. ++|.+++|.-+ |.+++++ .+..|.+|-+..
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~k-----evv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETK-----EVVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCc-----eEEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999887 68999999993 4444 466777 89999999887 7888874 556677776653
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=9e-10 Score=107.84 Aligned_cols=257 Identities=15% Similarity=0.207 Sum_probs=171.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc-----EEEEecCCC------------CCeEEEEEcCCC---eEEE
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 508 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~s~~~---~l~s 508 (737)
-.+-|.++.|. |.+|++|. +|.|.++.-.... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45668899999 99999999 8999998654322 233444553 357788998877 7888
Q ss_pred EECCCeEEEEecCCCcE-----------------------------------EEEE-cCCCcceEEEEEeCCCCEEEEEe
Q 004683 509 GFDDSSILVHCPCTKKT-----------------------------------KAKL-KGHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 509 gs~dg~I~vwd~~~~~~-----------------------------------~~~l-~~~~~~v~~l~~sp~g~~l~s~s 552 (737)
.+.|.+|++|.+..... .+.+ ..|+--|++++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 88999999998753210 1111 24777899999999999888765
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCC-CCCCCCeEEEEEecCCCEEE--EEecCcEEEEeCCCCcee------EEecC
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLL--SIHEGQIDVYEAPTLNHT------SQLVP 623 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~--~~~dg~I~iwd~~~~~~~------~~~~~ 623 (737)
|=.|.+|++.-... ...+..+.... ..-+.-|++..|+|..-.+. +++.|+|++-|++..... .....
T Consensus 184 -dLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 77899998864211 11111111110 00013578899999763333 368899999999843211 11100
Q ss_pred CC--------CCCCeEEEEEccCCCEEEEEecCCeEEEEEc-CCCeeEEEEecccccCCC----CccCcee-eEEEEEcc
Q 004683 624 DK--------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIAAHP 689 (737)
Q Consensus 624 ~~--------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~-~~~~~~~~~~~~~~~~~g----~~~~~v~-~~~v~~sp 689 (737)
.+ --..|..+.||++|+++++-.. -+|++||+ ...+++..++.|.+.... -++..++ -..++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 00 1346888999999999998643 68999999 456777777766543110 0122222 24789998
Q ss_pred CCCCEEEEEECCCcEEEEecCCCc
Q 004683 690 LEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++.+++||+....+++++...+.
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -CcceEecccccceEEEecCCCCc
Confidence 78899999999999999976654
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=5.6e-09 Score=109.77 Aligned_cols=190 Identities=13% Similarity=0.122 Sum_probs=139.2
Q ss_pred CCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEe------c--------------CCCEEEEEE
Q 004683 348 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 407 (737)
Q Consensus 348 spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fs------p--------------dg~~L~s~s 407 (737)
.|-+.++|....||.+++|+...+ +.++-.-|..--++.-.+..|. | |...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKN----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCc----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 355788999999999999998853 2222101110012233333332 1 222344444
Q ss_pred CCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcE
Q 004683 408 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 484 (737)
Q Consensus 408 ~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~ 484 (737)
..|.|.+| +...|++...+..++|.+.|.++.++ -..|.+++ |+.+..|+..++..
T Consensus 78 ~~g~v~~y---------------------s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSVLLY---------------------SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccEEEE---------------------EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 45555544 44455555555555899999999999 66788888 99999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC-----CCEEEEE-eCCCcE
Q 004683 485 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVSS-GADAQL 557 (737)
Q Consensus 485 ~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~-----g~~l~s~-s~dg~I 557 (737)
++.+.+....+.+++++||| .+++|+ +.|++||+++++.+..|.||.++|++++|..+ |.+++++ ..+..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999999999999999999 998886 68999999999999999999999999999776 6666554 445667
Q ss_pred EEEeCCC
Q 004683 558 CVWDAVG 564 (737)
Q Consensus 558 ~lwdl~~ 564 (737)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7886654
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=4.1e-09 Score=101.37 Aligned_cols=268 Identities=15% Similarity=0.080 Sum_probs=162.7
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec---CCC-EEEEEECCCcEEEeeccCCcccccccceeeeeEEe
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY 436 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp---dg~-~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~ 436 (737)
|.+.++++...+... ... ++.. -++.+..+.|+. +|. .++-+-.+|.|.++....... + ...
T Consensus 46 Gkl~Lys~~d~~~~~-l~~--~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s-------s---~~L 111 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSP-LDT--LQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES-------S---VHL 111 (339)
T ss_pred cceEEEeecccccCc-cce--eeee-cccccceeeeeeccCCccceeeeccccceEEEEeecccee-------e---eee
Confidence 567777776543222 111 1110 356677888873 555 455566678888886542211 0 001
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcE--EEEecCCCCCeEEEEEcCCC--eEEEE
Q 004683 437 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFG 509 (737)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--~l~sg 509 (737)
..-++.-+ ......++.|+ +..++++- +|.+.+-+...+.. ++.++.|.-.++...|+... .+.+|
T Consensus 112 ~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 112 RGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred cccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec
Confidence 11010000 00123456677 66676666 78888665554433 44788999999999998777 89999
Q ss_pred ECCCeEEEEecC-CCcEEEE-EcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC
Q 004683 510 FDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 510 s~dg~I~vwd~~-~~~~~~~-l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
+.|+.+..||++ .++.+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.+.- .+++..-..+ +.
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----GG 255 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----GG 255 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----cc
Confidence 999999999998 4444433 455889999998876 6789999999999999999952 2344322222 78
Q ss_pred eEEEEEecCC--CEEEEEecCcEEEEeCCCCce-----eEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEE-EEEcC
Q 004683 587 VNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNH-----TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTS 657 (737)
Q Consensus 587 v~~l~~sp~g--~~l~~~~dg~I~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~-vwd~~ 657 (737)
|+.+.++|.- +.++++.-+..+|.+.+.+.. ....+ .|.+-+....|.....++++++ .|..++ +|-.-
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~--~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK--IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc--cccceeeccccccccceeeeeeccccceeeeeeec
Confidence 9999999964 334456545556666554321 11121 2444455555543345677754 355544 66554
Q ss_pred CCe
Q 004683 658 TLE 660 (737)
Q Consensus 658 ~~~ 660 (737)
++.
T Consensus 334 t~~ 336 (339)
T KOG0280|consen 334 TGE 336 (339)
T ss_pred cCC
Confidence 443
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=3.1e-07 Score=95.41 Aligned_cols=229 Identities=12% Similarity=-0.003 Sum_probs=141.9
Q ss_pred CCeEEEEECCCCcEEEEecCCCC-------CeEEEEEcCCC-eEEEEE-C-CCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 471 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~-~l~sgs-~-dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
+..|.+||+.+++.+..+..... ....++++||| ++++.. . +..|.+.|+.+++.+..+.-- ....-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEE
Confidence 47899999999999988873222 23478999999 777655 3 689999999999998877641 1222222
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe-EEEEEec-CCCEEEEEecCcEEEEeCCC----
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP-DQIHLLSIHEGQIDVYEAPT---- 614 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~sp-~g~~l~~~~dg~I~iwd~~~---- 614 (737)
.+++..+ +-+.||......+.+.......... +..+.. .++ ..-.+++ +|+++.++..|.|.+.|+..
T Consensus 155 t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~---~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 155 TANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTE-VFHPED---EYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ecCCccE--EEeecCceEEEEecCCCceEEeeee-eecCCc---cccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 2222222 2233454444333221111111111 111100 000 0114466 89999888779999999643
Q ss_pred -CceeEEecCC-----CCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEcCCCeeEEEEecccccCCCCccC
Q 004683 615 -LNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC----------KSGHVKVFDTSTLELRCQINLTAYAQPGTISL 678 (737)
Q Consensus 615 -~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~ 678 (737)
...+..+... -..+.+.-++++|+++.+++.. ..+.|.++|..+++.+..+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~ 299 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GH 299 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CC
Confidence 3333332211 0123344599999999888743 125899999999999998864 23
Q ss_pred ceeeEEEEEccCCCC-EEEEEE-CCCcEEEEecCCCceeeee
Q 004683 679 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 679 ~v~~~~v~~sp~d~~-~las~s-~Dg~V~iWd~~~~~~~w~~ 718 (737)
..+ .++++| |++ .|.+.. .++.|.+.|..+++..-..
T Consensus 300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 344 899999 777 666555 6789999999998765554
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=7.3e-08 Score=99.53 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=177.6
Q ss_pred ceeeeCCCCccccccCCCCCEEEEEecCC---------------eEEEeecCccCCCCceeeeecCCCCCCCCeE-EEEE
Q 004683 333 SSCFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIY 396 (737)
Q Consensus 333 s~l~~~~~~~~~~~~spdg~~la~~s~dg---------------~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~-~v~f 396 (737)
.+..+.+.......|||.|++|.+=+..+ .+.+||... +.+... +++.......| -+.|
T Consensus 65 ~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----g~iv~s-f~~~~q~~~~Wp~~k~ 139 (561)
T COG5354 65 KLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----GMIVFS-FNGISQPYLGWPVLKF 139 (561)
T ss_pred heeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC----ceeEee-ccccCCcccccceeee
Confidence 34555666667777999999999865443 488999884 433322 44411122266 7899
Q ss_pred ecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEE---
Q 004683 397 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA--- 469 (737)
Q Consensus 397 spdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~--- 469 (737)
|-+.+|+|-.. ...+.|+++. ... ...-...--...|....|+ +..|+.-
T Consensus 140 s~~D~y~ARvv-~~sl~i~e~t-~n~---------------------~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 140 SIDDKYVARVV-GSSLYIHEIT-DNI---------------------EEHPFKNLRPVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred eecchhhhhhc-cCeEEEEecC-Ccc---------------------ccCchhhccccceeeEEecCCCCCceEEEEccc
Confidence 99988877663 3467777752 111 0000000012445566666 1233432
Q ss_pred --e-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE----E-------CCCeEEEEecCCCcEEEEEcCCCc
Q 004683 470 --S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 470 --s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg----s-------~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
+ .+.+++|.+..+..+.+-.-....-..+.|.+.| .+++- . ....++++++....+ .....-.+
T Consensus 197 k~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~ 275 (561)
T COG5354 197 KLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKD 275 (561)
T ss_pred cCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccc
Confidence 2 5789999998776655433222222367888888 33321 1 124678888874433 33335688
Q ss_pred ceEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E---ecCcEE
Q 004683 535 RITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQID 608 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s--~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~---~dg~I~ 608 (737)
+|...+|.|.++.+++.+ .+..+.++|+++. ....++.. .=..+.|+|.+++++. + ..|.|.
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe~------~rNT~~fsp~~r~il~agF~nl~gni~ 343 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPEQ------KRNTIFFSPHERYILFAGFDNLQGNIE 343 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc------eEEecCCc------ccccccccCcccEEEEecCCccccceE
Confidence 999999999888766544 6889999999972 22223332 3447889999999987 5 347899
Q ss_pred EEeCCCCceeE-EecCCCCCCCeEEEEEccCCCEEEEEe------cCCeEEEEEcCCCe
Q 004683 609 VYEAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC------KSGHVKVFDTSTLE 660 (737)
Q Consensus 609 iwd~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~sgs------~dg~I~vwd~~~~~ 660 (737)
+||......+. .+.+ ....-+.|+||++++.+.. .|..|.|||+....
T Consensus 344 i~~~~~rf~~~~~~~~----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 344 IFDPAGRFKVAGAFNG----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EeccCCceEEEEEeec----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 99987554433 5532 3345677999999988754 37889999987544
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=9e-07 Score=90.63 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=119.7
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeeceeeeecccCCCCC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 583 (737)
+++..| .|...+.+...+-.++. +|...|.-..+.-+++-++.|..|| .+-++|.++++... +..+-
T Consensus 334 ~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------~e~~l--- 401 (668)
T COG4946 334 YIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------IEKDL--- 401 (668)
T ss_pred EEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------eeCCc---
Confidence 666655 35566665544443332 3566677777777778899999999 89999999864322 22222
Q ss_pred CCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEEcCC
Q 004683 584 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTST 658 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d----g~I~vwd~~~ 658 (737)
+.|.++..+|+|++++++ ....|.+.|+.+++....-+. ..+-|+.++|+|+++|+|-+--+ ..|+++|+.+
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 689999999999999987 557899999999987543332 36779999999999999976655 4689999999
Q ss_pred CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEE
Q 004683 659 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
++......+. .+-.+-+|.| |+++|.--
T Consensus 479 ~Kiy~vTT~t-----------a~DfsPaFD~-d~ryLYfL 506 (668)
T COG4946 479 GKIYDVTTPT-----------AYDFSPAFDP-DGRYLYFL 506 (668)
T ss_pred CeEEEecCCc-----------ccccCcccCC-CCcEEEEE
Confidence 9876654321 1223678888 77766543
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=1.2e-07 Score=113.92 Aligned_cols=254 Identities=11% Similarity=0.042 Sum_probs=159.3
Q ss_pred EEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecC-C-------------CCCeEEEEEcCCC-eEEEEE-CCCeEE
Q 004683 457 SCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN-P-------------PPIATYFILLPQD-LFAFGF-DDSSIL 516 (737)
Q Consensus 457 ~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~-~l~sgs-~dg~I~ 516 (737)
..++++ ++.+++-. ++.|++||.. +..+..+.+ . -.....+++++++ .|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 356776 44555545 7899999976 554444432 1 1134688999887 655554 457899
Q ss_pred EEecCCCcEEEEEcCC-----------------CcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeece--eeeec
Q 004683 517 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSK--FLHSF 576 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~-----------------~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~--~~~~~ 576 (737)
++|..++. +.++.+- -.....++++| ++..+++.+.++.|++||..++...... -....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987764 4333210 11246799999 5666777778899999998875321100 00000
Q ss_pred ccCCC---CCCCCeEEEEEecCCCEEEE--EecCcEEEEeCCCCceeEEecC-----------CC--------CCCCeEE
Q 004683 577 QTGLV---PETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY 632 (737)
Q Consensus 577 ~~~~~---~~~~~v~~l~~sp~g~~l~~--~~dg~I~iwd~~~~~~~~~~~~-----------~~--------h~~~v~~ 632 (737)
..++. ........++++|+|+.|++ +.++.|++||+.++.......+ .. ......+
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 00000 00134667999999986665 3678999999987653211100 00 0123468
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccc--cCCCCc--cCceeeEEEEEccCCCCEEEEEECCCcEEEEe
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~--~~~g~~--~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd 708 (737)
++++++|..+++-+.+++|++||..++....... ... ...|.. ..--.+..+++++ +|+++++-+.++.|++||
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 9999999988888899999999999887654332 110 000100 0011355899999 789999999999999999
Q ss_pred cCCCce
Q 004683 709 PLESEV 714 (737)
Q Consensus 709 ~~~~~~ 714 (737)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988753
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.2e-09 Score=112.84 Aligned_cols=228 Identities=11% Similarity=0.102 Sum_probs=165.3
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc---------------EEEEecCCCCCeEEEEEcCCC-eEEEEECC
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---------------TLATFANPPPIATYFILLPQD-LFAFGFDD 512 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d 512 (737)
......|++|+ .+++++|+ ||.++|..+.+.. .-+++.||.+.|..+.|+.+. .+-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 44567899999 88999999 9999999775421 224667999999999999988 99999999
Q ss_pred CeEEEEecCCCcEEEEEc--CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEE
Q 004683 513 SSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 513 g~I~vwd~~~~~~~~~l~--~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
|.|.+|-+-.|.-...+. ...+.|.+++|+.+|..+...-.||.|.+=.++... +..+.+. + .....+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLk----g-----~~l~hv 162 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELK----G-----QLLAHV 162 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcc----h-----heccce
Confidence 999999988776443332 246779999999999999999999999887777522 2222222 2 235578
Q ss_pred EEecCCCEEEEE-ecCcEEEEeCCCC-------ceeEEecCC--CCCCCeEEEEEc--------cCCCEEEEEecCCeEE
Q 004683 591 QFHPDQIHLLSI-HEGQIDVYEAPTL-------NHTSQLVPD--KMDLPITYATYS--------CDGKCIYVSCKSGHVK 652 (737)
Q Consensus 591 ~~sp~g~~l~~~-~dg~I~iwd~~~~-------~~~~~~~~~--~h~~~v~~~~~s--------p~~~~l~sgs~dg~I~ 652 (737)
.|++|.+.++.+ .+|.+++||.+.. .+.....+. .....|..+.|. ||...++++..+|.+.
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999999888775 7899999997532 111111110 012336666764 5778999999999999
Q ss_pred EEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC
Q 004683 653 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 653 vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
|..-.+...-..+ +.+..+....|+| +|..||.+|.|
T Consensus 243 iMR~eND~~Pvv~-----------dtgm~~vgakWnh-~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEPVVV-----------DTGMKIVGAKWNH-NGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCCeEE-----------ecccEeecceecC-CCcEEEEccCc
Confidence 8765544322222 2235667999999 89999999865
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.5e-09 Score=111.92 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=170.7
Q ss_pred CCCCEEEEEecCCeEEEeecCccCC---CCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINE---PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~---~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
.+.+-++++++|.+|++|.+....+ +..|+- ++.. |+.+|.++.|-.+-++++++ ||.|.+||.-- |
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQf-TY~a--Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-----g 814 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQF-TYQA--HKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-----G 814 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeee-Ehhh--ccCcccceeeeeccceeeec--cCcceeecccc-----c
Confidence 4556789999999999999875432 223543 3666 99999999999999988877 88999998652 2
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEE-e-CCeEEEEECCCCcEEEEec-----CCCCCeEE
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATFA-----NPPPIATY 497 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~-s-dg~i~vwd~~~~~~~~~~~-----~~~~~v~~ 497 (737)
...+.. .|+++.+ ..+.|.|+.-- ...+..| + ..+|+++|...++....++ +....+.+
T Consensus 815 r~Laq~---~dapk~~----------a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 815 RLLAQM---EDAPKEG----------AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred chhHhh---hcCcccC----------CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 222211 2333222 23344444433 3334444 4 7899999999887666554 44567899
Q ss_pred EEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEE-EeCCCCceeeceeeee
Q 004683 498 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHS 575 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~l-wdl~~~~~~~~~~~~~ 575 (737)
+++.+.| .+++|-.+|+|.+.|.++|+.+..++........++ .|..+.++....|.++.+ |-.-.+.. .++
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim----h~q- 955 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM----HLQ- 955 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee----eec-
Confidence 9999999 999999999999999999999988876544444443 355567777777888888 86555321 111
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEEEec-CcEEEEeCC----CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYEAP----TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~~~d-g~I~iwd~~----~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
..... .+..- .-.-|..+++... ..+.+|--. ....+..+.+....+..++++.-|-..-+++|++.|.
T Consensus 956 ~kppp----epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 956 DKPPP----EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred cCCCC----cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence 00000 11100 0112334444322 344555321 1112223333334677888888887777778888888
Q ss_pred EEE
Q 004683 651 VKV 653 (737)
Q Consensus 651 I~v 653 (737)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 865
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=4.1e-08 Score=94.65 Aligned_cols=246 Identities=14% Similarity=0.061 Sum_probs=157.4
Q ss_pred CCCCeEEEEEe-----CC-EEEEEe-CCeEEEEECCCCcEEEEecCCCC------CeEEEEEcCCC-eEEEEECCCeEEE
Q 004683 452 PKDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPPP------IATYFILLPQD-LFAFGFDDSSILV 517 (737)
Q Consensus 452 h~~~V~~v~~s-----~~-~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~s~~~-~l~sgs~dg~I~v 517 (737)
..+.+..+.|. |. .++-+. .|.|.++..........+.+-.. ...++.|++.+ .++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 34556777777 44 334444 79999998765444444432221 24578899999 9999999999997
Q ss_pred EecCCCcEE--EEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 518 HCPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 518 wd~~~~~~~--~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
-+....... +.++.|.-..+...|+. +.+.+.+|+.|+.+..||++... ..+.+-..-|. ..|.+|.-+|
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~---~GV~SI~ss~ 220 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHT---SGVVSIYSSP 220 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----ceeeecceeee---cceEEEecCC
Confidence 665554443 47889999999999976 44789999999999999999311 12221122344 6788888886
Q ss_pred C-CCEEEEE-ecCcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCeeEEEEecccc
Q 004683 595 D-QIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 595 ~-g~~l~~~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 670 (737)
. +.++++| .|..|++||.++ ++++..-.. .+.|+.+.++|.- ..|+.++.-+-.+|-+.+.+....... ..
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~--~~ 295 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV--LP 295 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee--ee
Confidence 5 5788885 899999999984 666654432 6889999999843 233344444446777776554321111 11
Q ss_pred cCCCCccCceeeEEEEEccCCCCEEEEEE-CCCcEE-EEecCCCc
Q 004683 671 AQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESE 713 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~-iWd~~~~~ 713 (737)
...+| .+-.+ .-.|... ...||||+ .|..++ +|-.-+++
T Consensus 296 s~~~h-dSl~Y--G~DWd~~-~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 296 SDKIH-DSLCY--GGDWDSK-DSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ccccc-cceee--ccccccc-cceeeeeeccccceeeeeeeccCC
Confidence 11122 22223 5556542 35788876 566645 77665554
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=126.37 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=141.7
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...-.|...+.++|+.||.|++|.... +.......-.| ...|+.+.|+..|..+..+..||.+.+|.......
T Consensus 2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt~g---~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~- 2285 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRTAG---NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY- 2285 (2439)
T ss_pred eecCCCCCceEEecCCCceEEEEeccC---CCeEEEeeccC---cchhhhhhhcccCCceeeeccCCceeecccCCcce-
Confidence 334557778899999999999999875 23333333333 48999999999999999999999999997652211
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe----CCeEEEEECCC-CcEEEEecCCCCCeEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLET-FQTLATFANPPPIATYF 498 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s----dg~i~vwd~~~-~~~~~~~~~~~~~v~~~ 498 (737)
.-| .+|+...+.+.|-+..+++++ ++.+.+||..- +..-..-.+|.+.++++
T Consensus 2286 ----------~s~-------------qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2286 ----------TSW-------------QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred ----------ecc-------------ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence 011 168888999999887788776 47899999743 22212227999999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~ 564 (737)
++.|.. .+++|+.+|.|++||++..+.++.++. +. ...++++|+..|.++||++..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence 999999 999999999999999998887777664 34 456899999999999999987
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.3e-08 Score=107.68 Aligned_cols=304 Identities=11% Similarity=0.092 Sum_probs=194.2
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
++|..|...-.++.|+|.|- +|.|+. ..|.+-|..+ -+.++... .|...|+.+.|
T Consensus 9 lpG~l~~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s---------------------~q~iqsie--~h~s~V~~VrW 63 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGL-IAYGSH-SLVSVVDSRS---------------------LQLIQSIE--LHQSAVTSVRW 63 (1062)
T ss_pred CCCCCCcccccccccCccce-EEEecC-ceEEEEehhh---------------------hhhhhccc--cCccceeEEEe
Confidence 66644666688999999984 565554 4565555432 22222222 58899999999
Q ss_pred e--------CC------EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC---C--eEEEEECCCeEEEEecC
Q 004683 462 R--------GS------HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 462 s--------~~------~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---~--~l~sgs~dg~I~vwd~~ 521 (737)
. +. .+|++. .|.|.+||...+..+..+..|...+..++|-+. . .+++-.....+.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 7 11 345555 699999999999988889999999999998653 3 56677778899999999
Q ss_pred CCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCc-e-eeceeeeecccCCCC----------------
Q 004683 522 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK-K-LCSKFLHSFQTGLVP---------------- 582 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~-~-~~~~~~~~~~~~~~~---------------- 582 (737)
+|+.............|+.+.| |.+.+..-+..|.+.+-+.-... . ...+.++ +...|..
T Consensus 144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence 9998877776667788899998 66777777777777666543211 1 1112222 2222210
Q ss_pred CCCC------eEEEEEecCCCEE-EEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEE
Q 004683 583 ETTI------VNHIQFHPDQIHL-LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKV 653 (737)
Q Consensus 583 ~~~~------v~~l~~sp~g~~l-~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~sgs~dg~I~v 653 (737)
.+.. ...++|+|.-+.+ +......+.++|++-..++.+.... .+.+.-+.+-|+ ...|+++..||.+.+
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 0000 1125678876444 4478889999999988888777553 344445556554 468999999999999
Q ss_pred EEcCCCeeEEEEeccc-ccCCCCc------cCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 654 FDTSTLELRCQINLTA-YAQPGTI------SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~-~~~~g~~------~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
|-.+........+... ....|.. -....+......|.....++.--.+|.+.+|.+.+++
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 9876522111110000 0000000 1112233445556556667777788999999998754
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=4.3e-10 Score=121.87 Aligned_cols=297 Identities=14% Similarity=0.137 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHhhccccceeccccCCCCCccccc-cCCccccccccccccccCCCCCCCcceeeccCCCCCcceeeeCCC
Q 004683 262 DKSRLLSLIKQIMDWWVPYCINVMPNANNETISL-KDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 340 (737)
Q Consensus 262 ~~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~gh~~~~s~l~~~~~ 340 (737)
.+--|.+++.|.++.|+++|.+++..++...+-. |.++-++....+.-+++-+-... .++ +-|..|++-.+
T Consensus 1011 ~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r--el~--~~y~gV~g~~~---- 1082 (1516)
T KOG1832|consen 1011 ERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR--ELQ--SFYSGVHGNRR---- 1082 (1516)
T ss_pred CCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch--hhc--CcccccccCcc----
Confidence 3567899999999999999999998887655443 66666555553311111111100 000 01111111111
Q ss_pred CccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 341 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 341 ~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
|.+.+.+ ..+-|.. +.. |+...+|++||-+.++|+.|+..|.|+++++.++
T Consensus 1083 ---------dr~~IFS-----RFr~w~~-------------frd--~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG 1133 (1516)
T KOG1832|consen 1083 ---------DRQFIFS-----RFRSWRS-------------FRD--ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG 1133 (1516)
T ss_pred ---------cchhhHh-----hcccchh-------------hhc--cccceeeEEeecCCceEEeeeccceEEEEEccCc
Confidence 1111100 0112221 233 7889999999999999999999999999988754
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--C-CeEEEEECCC-CcEEEEecCCCCC
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLET-FQTLATFANPPPI 494 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--d-g~i~vwd~~~-~~~~~~~~~~~~~ 494 (737)
.. ..+.. +|.++|+.+.-+ |..+++.+ . --..+|++.. +...++|.+
T Consensus 1134 ~~-----e~s~n------------------cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---- 1186 (1516)
T KOG1832|consen 1134 SM-----EESVN------------------CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE---- 1186 (1516)
T ss_pred cc-----ccccc------------------ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----
Confidence 32 22221 799999999998 77666655 3 3678999854 555556543
Q ss_pred eEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE-cC---CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004683 495 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 569 (737)
Q Consensus 495 v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l-~~---~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~ 569 (737)
-.++.|+... .-+.|+....+.+||++++..+.++ .+ ....-++..|+|+...++- || .+||++..
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~---- 1257 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIP---- 1257 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccH----
Confidence 3477888776 5556666678999999999876653 22 2223367899999887764 44 47999973
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
..++.+..- ..-..-.|+|+|..++..+. |||+++.+.++.... -.-+.+.|+..|..++..
T Consensus 1258 -~aIh~FD~f-----t~~~~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP~----Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1258 -EAIHRFDQF-----TDYGGGGFHPSGNEVIINSE----IWDMRTFKLLHSVPS----LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -HHHhhhhhh-----eecccccccCCCceEEeech----hhhhHHHHHHhcCcc----ccceEEEeccCccchhhh
Confidence 333322221 11223468999998887432 999999988877643 334578888888776644
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-07 Score=90.12 Aligned_cols=241 Identities=10% Similarity=0.043 Sum_probs=153.8
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEE-EEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
..+||.|+ .|...+|...+.+.. +....+...|+-+.=..+. .+..++.|.++++.++..+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45788887 899999999865433 3333444444322211222 6778889999999988755433333222234889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCce
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 617 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~ 617 (737)
+++++|++++++.+....|..|.+........+ +. .+... ..-.+..|+.....+|+ ..||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~--~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY--EAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eE--ecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999988763221111 11 11111 34567889998888888 5999999999987543
Q ss_pred eEEe---cCCCCCCCeEEEEEccCCC--EEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 618 TSQL---VPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 618 ~~~~---~~~~h~~~v~~~~~sp~~~--~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
.... ..+.|.+.+..+.|++.|. +|+..-.-+.+.|.|++++.....+.........|....+ +...|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i--fgt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI--FGTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc--ccccccC-CC
Confidence 3221 1234799999999998663 4555545588999999999877766543222222212223 3666666 45
Q ss_pred CEEEEEECCCcEEEEecCCCc
Q 004683 693 NRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~~~~ 713 (737)
.-+.+.+++ .+.-|++.++.
T Consensus 315 ~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccch-hhheeeccccc
Confidence 544444444 35667766544
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=3.6e-07 Score=109.73 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=156.9
Q ss_pred EEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeee-EEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004683 392 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMES-QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 467 (737)
Q Consensus 392 ~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~-~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 467 (737)
..++++++ |..+++-+.++.|.+||..+... ..+.. -......|.... ..-.....+++. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i------~~ig~~g~~G~~dG~~~~-----a~f~~P~GIavd~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI------VQIGSTGEEGLRDGSFED-----ATFNRPQGLAYNAKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE------EEEccCCCcCCCCCchhc-----cccCCCcEEEEeCCCCEEE
Confidence 46888875 55666666788899998653211 00000 000000010000 122335678887 66666
Q ss_pred EEe--CCeEEEEECCCCcEEEEecCC-----------------CCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCCcEE
Q 004683 468 SAS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 468 s~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
++. ++.|+++|..++. +.++.+. -..-..++++|+ + .+++.+.++.|++||..++...
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 655 5789999987654 3333210 112357899995 5 6677778899999998876543
Q ss_pred EEEcCC---------------CcceEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeece---e-----eeecccCCC-
Q 004683 527 AKLKGH---------------QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSK---F-----LHSFQTGLV- 581 (737)
Q Consensus 527 ~~l~~~---------------~~~v~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~~~~~~---~-----~~~~~~~~~- 581 (737)
.+.+. -.....++++|+|+. +++.+.++.|++||+.++...... . +..+.....
T Consensus 719 -~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 719 -VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred -EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 22111 123467999999985 455566789999999875321000 0 000000000
Q ss_pred ---CCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC-----------CCCCCeEEEEEccCCCEEEEEe
Q 004683 582 ---PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 582 ---~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~l~sgs 646 (737)
..-.....++++++|..+++ ..++.|++||..++......... ..-.....++++++|+++++-+
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 00023568999999987777 58899999999877654322110 0123577899999999988988
Q ss_pred cCCeEEEEEcCCCee
Q 004683 647 KSGHVKVFDTSTLEL 661 (737)
Q Consensus 647 ~dg~I~vwd~~~~~~ 661 (737)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999998865
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.99 E-value=2.6e-07 Score=92.89 Aligned_cols=225 Identities=17% Similarity=0.118 Sum_probs=141.6
Q ss_pred CCeEEEEECCCCcEEEEecCC--CCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 471 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
+|+|..||..+|+.+...... .....+..+..++.+++++.++.+..||..+|+.+..+.. ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 588999999999999888631 1222222232333777888999999999999998877764 22221111 2245567
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCC
Q 004683 549 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 549 ~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
++++.++.++.+|..+++............. ...........+..++++ .++.|..+|.++|+.+.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTC-----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeecccccccc-----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 7777888999999999766443211100000 111122222236666664 6899999999999998777552211
Q ss_pred --CC------eEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 628 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 628 --~~------v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.. +.+-....++ .++.++.++.+.-+|+.+++.+..... .. .. . ...+ ++..|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~~-~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------SG-IY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------CC-cc--C-Ccee-eCCEEEEEe
Confidence 11 1222222344 777777788644449999997654321 11 21 1 1234 567888887
Q ss_pred CCCcEEEEecCCCceeee
Q 004683 700 TNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~~~w~ 717 (737)
.++.|..||+.+++.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999996
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.3e-07 Score=96.61 Aligned_cols=273 Identities=9% Similarity=0.086 Sum_probs=172.5
Q ss_pred eCCCCccccccCCCCCEEEEEecC-----------CeEEEeecCccCCCCceeeeecCCCCCCCCeE-EEEEecCCCEEE
Q 004683 337 NDNNQSRESTSLPDADSAVCAKSL-----------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDFLV 404 (737)
Q Consensus 337 ~~~~~~~~~~~spdg~~la~~s~d-----------g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~-~v~fspdg~~L~ 404 (737)
+.|....-++|||..++|++=|.. ..++|||+.++.....+... . ....++ -..||.|++|+|
T Consensus 247 F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--~---~~~~~WP~frWS~DdKy~A 321 (698)
T KOG2314|consen 247 FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--K---SPYLKWPIFRWSHDDKYFA 321 (698)
T ss_pred ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--C---CCccccceEEeccCCceeE
Confidence 455556667799999999986542 45799999964222222211 1 123333 478999999998
Q ss_pred EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---C---CeEEE
Q 004683 405 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKISI 476 (737)
Q Consensus 405 s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---d---g~i~v 476 (737)
.-.. ++|.|++..+- -++|.++- ..+.|....|+ ++.||--. + ..+.+
T Consensus 322 rm~~-~sisIyEtpsf-------------~lld~Ksl----------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL 377 (698)
T KOG2314|consen 322 RMTG-NSISIYETPSF-------------MLLDKKSL----------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTL 377 (698)
T ss_pred Eecc-ceEEEEecCce-------------eeeccccc----------CCccccCcccCCCcceEEEEcccccCCcceEEE
Confidence 8776 57778875531 12222211 34567778888 67777655 1 36778
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEE----------CCCeEEEEecCCCcE-EEEEcCCCcceEEEEEeCC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs----------~dg~I~vwd~~~~~~-~~~l~~~~~~v~~l~~sp~ 544 (737)
-.+.+++.+++-.-+.-.-..+.|-.+| +|+.-- .-..+.|+.++.... +..+. -...|...+|-|.
T Consensus 378 ~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~ 456 (698)
T KOG2314|consen 378 MEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPH 456 (698)
T ss_pred EecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccC
Confidence 8888888877766554333456777777 665421 112355555554432 22222 4577889999999
Q ss_pred CCEEEEEeC---CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE----ecCcEEEEeCCCCce
Q 004683 545 LNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNH 617 (737)
Q Consensus 545 g~~l~s~s~---dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~----~dg~I~iwd~~~~~~ 617 (737)
|+.+++-+. ..++.+|-+.+... ....+..+.. ...+.+.|+|.|++++++ ..|.+..+|+....+
T Consensus 457 gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 457 GDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred CCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 998776554 35788998874211 1122222333 356789999999999863 578999999975343
Q ss_pred eEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 618 TSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
..+-.+ . ....+.+.|.|.|+|+++++.-
T Consensus 530 k~~~~~-e-h~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 530 KDTASP-E-HFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhccCc-c-ccccccceECCCCCEEEEeeeh
Confidence 332222 2 2446789999999999998864
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=3.5e-09 Score=123.02 Aligned_cols=193 Identities=13% Similarity=0.230 Sum_probs=152.0
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
+-..|.++.-+ ..+.++|+ ||.|++|....++.+..++ .....|+.+.|+.+| .+..+..||.+.+|.+. .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 44556666555 66778888 9999999999898888876 334789999999999 99999999999999977 5667
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 602 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s---~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~ 602 (737)
...+.|....+.+.|-. ..+++++ .++.+.+||..-... ... +...|. +.++++++.|....+++ |
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEecC
Confidence 77788988888888865 4566554 468899999764211 111 224555 78999999999999999 5
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+|.|++||++..+.+++++. +. ...++++|+..|.++||++..-..+..++.
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999998888776632 33 567899999999999999998877777653
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.8e-09 Score=109.98 Aligned_cols=222 Identities=13% Similarity=0.177 Sum_probs=158.8
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC-------CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC
Q 004683 484 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 484 ~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~-------~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
.+..+.+|...|..++--.+. .+++++.|++|++|.++. ..|..+++.|+.+|.++.|-.+.+++++ .||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence 345677999888887665555 899999999999999863 3467788899999999999998888765 589
Q ss_pred cEEEEeCCCCceeeceeeeeccc-CCCCCCCCeEEEEEecC--CCEEEE-E-ecCcEEEEeCCCCceeEEecC---CCCC
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPD--QIHLLS-I-HEGQIDVYEAPTLNHTSQLVP---DKMD 627 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~--g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~---~~h~ 627 (737)
.|++||.--+.. +.++.. ... +.+..+..-|+ ...+++ + ...+|+++|.+.+.....++. ....
T Consensus 805 giHlWDPFigr~-----Laq~~dapk~---~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 805 GIHLWDPFIGRL-----LAQMEDAPKE---GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred cceeecccccch-----hHhhhcCccc---CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 999999765432 221111 111 33444444444 333333 3 678999999998876655542 2235
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEE-
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV- 706 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i- 706 (737)
..+.+++..+.|++++++-.+|+|.+.|.++|+.+..+.+. . .....++ .| ..+.++....|.++.|
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--------e--cdllqla-ap-sdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM--------E--CDLLQLA-AP-SDQALAQSALDHSLAVN 944 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc--------c--chhhhhc-Cc-hhHHHHhhcccceeEee
Confidence 67889999999999999999999999999999988877543 1 1112333 24 3467787788899999
Q ss_pred EecCCCceeeeecCCCCCCCc
Q 004683 707 IEPLESEVEWGKLPFTDSREF 727 (737)
Q Consensus 707 Wd~~~~~~~w~~~~~~~~g~~ 727 (737)
|....+...+...||++-..+
T Consensus 945 Whaldgimh~q~kpppepahf 965 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPPEPAHF 965 (1034)
T ss_pred ehhcCCeeeeccCCCCcchhh
Confidence 999888877777666654444
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=1.3e-08 Score=108.72 Aligned_cols=284 Identities=11% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC--CEEEEEECCCcEEEee
Q 004683 339 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWK 416 (737)
Q Consensus 339 ~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg--~~L~s~s~dg~i~iWd 416 (737)
.+...+...+|.|.-+|.++.-|. .+-|++. +...... +. |...-.|-.+.|||.. .+-+.........+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~---p~~ppr~-l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDD---PFTPPRW-LH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccC---CCCCcee-ee-ccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 334445558899999999887664 4555554 3332222 11 1124567788898753 3444444444555787
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCC-cEEEEecCC
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANP 491 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~ 491 (737)
+.... ...+.... .+|...|+.+.|. ...+++++ |-.+..||+.+. ..+..+...
T Consensus 98 lA~ss-------------------~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 98 LAKSS-------------------SNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred hhcCC-------------------ccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 65211 11111111 1699999999999 66899999 999999999874 445555555
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCcee
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL 568 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~ 568 (737)
......+.|+-.. .+.+.+....|.+||.+.| .++..+++|...|+.++|+. ....+.+.+.||+|+.||.......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 5566788998877 7777788889999999865 56788999999999999876 3345788899999999998764322
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEE--E-ecCcEEEEeCC---------C-CceeEEecCCCCCCCeEEEEE
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAP---------T-LNHTSQLVPDKMDLPITYATY 635 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~-~dg~I~iwd~~---------~-~~~~~~~~~~~h~~~v~~~~~ 635 (737)
.... +... .+|..-++-|-|.-.+. . .+..+.+++.+ + .+++.+|.+ |...|...-|
T Consensus 238 ~~~~---vtt~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlW 307 (1081)
T KOG0309|consen 238 SKRT---VTTN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLW 307 (1081)
T ss_pred ccee---cccc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhh
Confidence 2211 1111 56777777776654443 2 23344444332 2 457788876 5666666655
Q ss_pred ccCC----------CEEEEEecCCeEEEEEcCC
Q 004683 636 SCDG----------KCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 636 sp~~----------~~l~sgs~dg~I~vwd~~~ 658 (737)
-..+ -.|++-+.|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 4221 2589999999999998763
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=9.1e-07 Score=96.15 Aligned_cols=287 Identities=9% Similarity=-0.009 Sum_probs=168.8
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe-EEEEEeCCEEEEEe-CCeEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 477 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V-~~v~~s~~~l~s~s-dg~i~vw 477 (737)
+..+++++.++.+.-+|..+++. +|..+......... ..+...+ ..+...++.++.++ +|.++.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDGWFS-KNKSALLSGGVTVAGGKVYIGSEKGQVYAL 135 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCcccccc-cccccccccccEEECCEEEEEcCCCEEEEE
Confidence 55677788888888888775543 56654332100000 0000111 12334455666666 8999999
Q ss_pred ECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceE-EEEEeC--CCCEEEEEeCC
Q 004683 478 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSL--SLNVLVSSGAD 554 (737)
Q Consensus 478 d~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~-~l~~sp--~g~~l~s~s~d 554 (737)
|.++|+.+.+.........+... .++.+++++.++.+.-+|..+|+.+..+......+. ...-+| .+..++.++.+
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN 214 (394)
T ss_pred ECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence 99999988877643321111112 134677788899999999999998877653211100 000111 13357778889
Q ss_pred CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec---CCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeE
Q 004683 555 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 631 (737)
|.+..+|..+++......+..-...+.. .....+..+| ++..++++.+|.+..+|..+|+.+-.... . ...
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~~ 288 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY---G-SVN 288 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC---C-Ccc
Confidence 9999999988765433222100000000 0001111112 34444446889999999999987655432 1 111
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 632 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
.+. ..+..|+.++.+|.++.+|..+|+.+...... + ..... +.... +..|..++.||.|.+.|..+
T Consensus 289 ~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~--~~~~~--sp~v~---~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 289 DFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L--HRLLT--APVLY---NGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred CcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C--CCccc--CCEEE---CCEEEEEeCCCEEEEEECCC
Confidence 222 35678888889999999999999887754321 0 00011 12221 35778889999999999999
Q ss_pred CceeeeecC
Q 004683 712 SEVEWGKLP 720 (737)
Q Consensus 712 ~~~~w~~~~ 720 (737)
++..|....
T Consensus 355 G~~~~~~~~ 363 (394)
T PRK11138 355 GRFVAQQKV 363 (394)
T ss_pred CCEEEEEEc
Confidence 999998744
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=2.2e-06 Score=93.18 Aligned_cols=259 Identities=9% Similarity=-0.028 Sum_probs=155.3
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-CCeEEE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 476 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-dg~i~v 476 (737)
++..++.++.+|.+..+|..+++. +|...... .+. +....+..++.+. +|.+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEV------------AWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCC------------cccccCCC------------ceecCCEEECCEEEEECCCCEEEE
Confidence 345677788889998888775544 46543321 111 1222355556566 899999
Q ss_pred EECCCCcEEEEecCCCCCe-----EEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCc-------ceEEEEEeC-
Q 004683 477 FSLETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL- 543 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~-------~v~~l~~sp- 543 (737)
+|..+|+.+..+....... .+-... ++.++.++.+|.+..+|..+|+.+........ ....+..+|
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 9999999988876432111 011111 23666778899999999999987654431100 011111222
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEec
Q 004683 544 -SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV 622 (737)
Q Consensus 544 -~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~ 622 (737)
.+..++.++.+|.+..+|..+++........ ....+... ++..++.+.+|.+..+|..+|+.+-...
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence 3456777888999999999987544332211 11122221 3334444688999999999998755432
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 623 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 623 ~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
... .....+... .+..|+.++.||.|++.|..+|+.+.+.... ...+.. ..... +..|..++.||
T Consensus 322 ~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~~---~~~l~v~t~~G 386 (394)
T PRK11138 322 DLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVVA---DDKLLIQARDG 386 (394)
T ss_pred ccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEEE---CCEEEEEeCCc
Confidence 111 111222222 3567888999999999999999988877532 111221 11221 34788889999
Q ss_pred cEEEEec
Q 004683 703 RVHVIEP 709 (737)
Q Consensus 703 ~V~iWd~ 709 (737)
.|..+++
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988765
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=9.4e-07 Score=95.83 Aligned_cols=209 Identities=10% Similarity=0.017 Sum_probs=130.5
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEECC---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~-l~sgs~d---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
..|.+-|.+.. ..+.+.... ......|+||| . ++..+.+ ..|+++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35666666533 344343333 67789999999 5 6544443 479999999887654433 455566788999998
Q ss_pred EEEEEe-CC--CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEec--C--cEEEEeCCCCceeE
Q 004683 547 VLVSSG-AD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTS 619 (737)
Q Consensus 547 ~l~s~s-~d--g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~d--g--~I~iwd~~~~~~~~ 619 (737)
.++... .+ ..|.++|+.++.. .. +.... .......|+|||+.|+...+ + .|+++|+.+++..+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~---~~---LT~~~----~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL---TQ---ITNYP----GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE---EE---cccCC----CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 776543 33 4688888877432 11 22211 22335689999998886422 2 68999998777643
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---------g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
.... ... ...|||||++|+..+.. ..|++.|+.++... .+... + .. ....|+|
T Consensus 316 lt~~---g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~----~~--~~p~~SP- 377 (419)
T PRK04043 316 VVFH---GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G----VN--QFPRFSS- 377 (419)
T ss_pred CccC---CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C----Cc--CCeEECC-
Confidence 3321 111 24899999998866543 36888899888643 33211 1 11 1588999
Q ss_pred CCCEEEEEECC-C--cEEEEecCC
Q 004683 691 EPNRIALGLTN-G--RVHVIEPLE 711 (737)
Q Consensus 691 d~~~las~s~D-g--~V~iWd~~~ 711 (737)
||+.++..+.+ + .+.+.++..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 78877766543 3 355566643
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=1.8e-06 Score=101.85 Aligned_cols=236 Identities=14% Similarity=0.199 Sum_probs=153.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEE----ECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC--
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIF----SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-- 521 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vw----d~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~-- 521 (737)
..+.|.++.|- ...++.+. +|.|.+. +..+. .+.....-+.+|.+++||||+ .++..+.++++.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45678888887 44555555 8998888 44432 222223346689999999999 88888888888776421
Q ss_pred -------------CCcEE--------EEEcC------------------------CCcceEEEEEeCCCCEEEEEeC---
Q 004683 522 -------------TKKTK--------AKLKG------------------------HQNRITCLAYSLSLNVLVSSGA--- 553 (737)
Q Consensus 522 -------------~~~~~--------~~l~~------------------------~~~~v~~l~~sp~g~~l~s~s~--- 553 (737)
..+.+ ..|+| +...-..++|-.||.++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00011 11111 1223457889999999998875
Q ss_pred C---CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe----cCcEEEEeCCCCceeEEecCC--
Q 004683 554 D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQLVPD-- 624 (737)
Q Consensus 554 d---g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~----dg~I~iwd~~~~~~~~~~~~~-- 624 (737)
. +.++||+-+. . ++...+.-. +--.+++|-|.|+++|++. ...|.+|.- +|-....|...
T Consensus 233 ~~~~R~iRVy~ReG-~------L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~ 301 (928)
T PF04762_consen 233 TGSRRVIRVYSREG-E------LQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD 301 (928)
T ss_pred CCceeEEEEECCCc-e------EEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence 2 4799999774 2 221121111 3344789999999999852 245667764 45544444332
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe--eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 625 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 625 ~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
.....|..+.|++|+..||....|. |.+|...+.. +.+.+... ....+ ..+.|+|.+...|...+.+|
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-------~~~~~--~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-------SSESV--NFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-------CCCCC--CceEECCCCCCEEEEEecCC
Confidence 2367899999999999999977665 9999998864 22232211 01112 25999998788888888888
Q ss_pred cEEEEec
Q 004683 703 RVHVIEP 709 (737)
Q Consensus 703 ~V~iWd~ 709 (737)
.+..++.
T Consensus 372 ~~~~~~~ 378 (928)
T PF04762_consen 372 QYEIYDF 378 (928)
T ss_pred cEEEEEE
Confidence 8877665
No 288
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.89 E-value=6.7e-08 Score=95.08 Aligned_cols=245 Identities=11% Similarity=0.147 Sum_probs=167.8
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |.+.|+....-|...-+++.+.|.+++||--.+. |+.-.++ +. ....+++++.+
T Consensus 20 ~eG--~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds----~q~wpsI----~~-------------~mP~~~~~~~y 76 (404)
T KOG1409|consen 20 IEG--SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS----GQYWPSI----YH-------------YMPSPCSAMEY 76 (404)
T ss_pred hcC--chhhhhhheeccCCCCeEEccccceeeeEEeccc----cccCchh----hh-------------hCCCCceEeee
Confidence 455 8999999999998888999999999999964431 1111110 00 24577888888
Q ss_pred e--CCEEEEEe-CCeEEEEECC----CCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC
Q 004683 462 R--GSHLFSAS-GGKISIFSLE----TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~ 533 (737)
. ...|++|- .|++.-+.+. .....+.+..|...+..+.|+-.. .+++.+.|..+.---.+.+..+..+.- .
T Consensus 77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~ 155 (404)
T KOG1409|consen 77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-E 155 (404)
T ss_pred eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-e
Confidence 8 55666666 7999888653 345566777899999999998888 999999998876655555544322210 1
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~ 612 (737)
...+++.+.-. +...|...|.|..-.+.... -.++. ...+|. +.+.+++|.|....+.++ .|..+.+||+
T Consensus 156 ~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~---~~~i~-~~~~h~---~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 156 TPASALQFDAL--YAFVGDHSGQITMLKLEQNG---CQLIT-TFNGHT---GEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred ccCCCCceeeE--EEEecccccceEEEEEeecC---CceEE-EEcCcc---cceEEEEEcCCCcEEEeccccCceEEEec
Confidence 11111111111 45556666666655444311 12222 355676 899999999999888885 8999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
.-++-+ .+....|...|..++.-+--+.+.+++.||.|-+|+.+...
T Consensus 227 gg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 227 GGRKGT-AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cCCcce-eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 644433 23333578888888888888899999999999999987543
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.7e-08 Score=108.03 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=178.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCC--CCeEEEEEe---
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR--- 462 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~--~~V~~v~~s--- 462 (737)
.+++..+..+|.|+-+|.++.-|.. +-|+..... + ...+ .|. -.|-.+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~----------p-------pr~l------~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT----------P-------PRWL------HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCC----------C-------ceee------eccCcchhcceecccCC
Confidence 5678899999999999999987654 334432111 0 0011 122 235566777
Q ss_pred --CCEEEEEeCCeEEEEECCC---CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCC-cEEEEEcCCCc
Q 004683 463 --GSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN 534 (737)
Q Consensus 463 --~~~l~s~sdg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~ 534 (737)
..++++.+...-.+|++.. ...-..+.+|...|+.+.|+|.. .+++++.|..+..||+++- .++..+..-..
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 4466666677777898853 23334456999999999999998 8999999999999999875 34555554556
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEEeC
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iwd~ 612 (737)
....+.|+.....+.+.+..+.|++||++.+. .++..+ .+|. ..|..+.|..-- ..+.+ +.|++|+.||.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~-K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSL-KGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC----cceEEe-cccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 67889998865566666778889999999753 444433 3455 678888887543 23334 69999999998
Q ss_pred CCCce--eEEecCCCCCCCeEEEEEccCCC--EEEEEecCCeEEEEEc---------CC-CeeEEEEecccccCCCCccC
Q 004683 613 PTLNH--TSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDT---------ST-LELRCQINLTAYAQPGTISL 678 (737)
Q Consensus 613 ~~~~~--~~~~~~~~h~~~v~~~~~sp~~~--~l~sgs~dg~I~vwd~---------~~-~~~~~~~~~~~~~~~g~~~~ 678 (737)
..... -++.. ...+|+..++-|-|. ++.---.+..+.+++. .+ .+.+..+.+ |.+.
T Consensus 232 ~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-------H~D~ 301 (1081)
T KOG0309|consen 232 SKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-------HDDV 301 (1081)
T ss_pred cccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-------cchH
Confidence 75432 22222 256777777777443 2221111224444433 32 244555553 3221
Q ss_pred ceeeEEEEEccC---------CCCEEEEEECCCcEEEEecCC
Q 004683 679 ELYPLVIAAHPL---------EPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 679 ~v~~~~v~~sp~---------d~~~las~s~Dg~V~iWd~~~ 711 (737)
| ....|-.. ..-.|+|-+.|.++++|-+.+
T Consensus 302 -V--~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 302 -V--LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -H--HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 13333221 123799999999999999875
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=6.6e-07 Score=85.31 Aligned_cols=234 Identities=6% Similarity=-0.067 Sum_probs=146.2
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE---EEe-CCEEEEEeCCeE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF---ALR-GSHLFSASGGKI 474 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v---~~s-~~~l~s~sdg~i 474 (737)
.-.+||.||..|...+|...+.+. . .++.| .|...|.-+ +-+ ...+++..|.++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~---h------~~~cd-------------~snn~v~~~~r~cd~~~~~~i~sndht~ 140 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG---H------LYQCD-------------VSNNDVTLVKRYCDLKFPLNIASNDHTG 140 (344)
T ss_pred cccEEEeccccceeeeecccCccc---c------eeeec-------------ccccchhhhhhhcccccceeeccCCcce
Confidence 345799999999999998764322 0 00111 122222211 111 233333338888
Q ss_pred EEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc--EEE-EEcCCCcceEEEEEeCCCCEEEE
Q 004683 475 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKA-KLKGHQNRITCLAYSLSLNVLVS 550 (737)
Q Consensus 475 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~--~~~-~l~~~~~~v~~l~~sp~g~~l~s 550 (737)
++.++..+..........-.+.++++++|+ +.++.+....|..|.+.... .+. .....+..-.+..|+.....+|+
T Consensus 141 k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv 220 (344)
T KOG4532|consen 141 KTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV 220 (344)
T ss_pred eEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE
Confidence 888776443322222222237899999999 88888888999999876532 223 22333445568889999999999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC--CEEEEE-ecCcEEEEeCCCCceeEEecCCC--
Q 004683 551 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-- 625 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~-- 625 (737)
++.||++.|||++.........-. ....|. +.+..+.|++.| ..|..+ .-+.+++.|++++.-.+.+...+
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISS-TRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred EecCCcEEEEEecccccchhhhcc-cCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 999999999999873211111111 122344 899999999877 344445 66889999999987666654432
Q ss_pred ---C-CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 626 ---M-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 626 ---h-~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
| ...|...+|+.++.-+.+.+++ .+.=|++.+.
T Consensus 297 ~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 297 ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred cccccccccccccccCCCcccccccch-hhheeecccc
Confidence 1 2447778888777666665543 2444555543
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=2.3e-06 Score=83.17 Aligned_cols=220 Identities=13% Similarity=0.114 Sum_probs=133.9
Q ss_pred EEEcCCCeEEEEECCCeEEEEecCCC--cEEEEEcCC---CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004683 498 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLKGH---QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 498 ~~~s~~~~l~sgs~dg~I~vwd~~~~--~~~~~l~~~---~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~ 572 (737)
++.+.+|.+++.-.|..|.+-..++. .++.+.+.. .-.-+.++|+||+..||.+...|+|++||+.+.+.....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45667774445556777777665432 222222222 2234679999999999999999999999998743322111
Q ss_pred eeecccCCCCCCCCeEEEEEecCC-------CEEEEEecCcEEEEeCCC-----CceeEEecCCC-CCCCeEEEEEccCC
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDK-MDLPITYATYSCDG 639 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g-------~~l~~~~dg~I~iwd~~~-----~~~~~~~~~~~-h~~~v~~~~~sp~~ 639 (737)
-......- ...|..+.|-+.. ..++...+|.++=|-+.. .+...++.... +...|.+++++|..
T Consensus 83 ~~~~~~d~---~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDL---SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCcc---ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11111111 1466777776532 345557888877666532 23333433222 36789999999998
Q ss_pred CEEEEEecC-----------CeEEEEEcCCCeeEEEEec---------------------ccccCCCCccCceeeEEEEE
Q 004683 640 KCIYVSCKS-----------GHVKVFDTSTLELRCQINL---------------------TAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 640 ~~l~sgs~d-----------g~I~vwd~~~~~~~~~~~~---------------------~~~~~~g~~~~~v~~~~v~~ 687 (737)
++|++||.. .-+..|.+-++.+-..... ..+...+.....+ ..|..
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i--~kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI--FKMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCce--EEEEE
Confidence 888876642 1366777654433221110 0001112123334 48999
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCc--eeeeecCCCC
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESE--VEWGKLPFTD 723 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~--~~w~~~~~~~ 723 (737)
|| ||..||+...+|.|.+|++.+-+ ..|.....+.
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg 274 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPG 274 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchhhCCC
Confidence 99 89999999999999999998754 5687765443
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=2.4e-06 Score=85.92 Aligned_cols=198 Identities=18% Similarity=0.118 Sum_probs=123.7
Q ss_pred EE-eCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE-cCCC---
Q 004683 460 AL-RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ--- 533 (737)
Q Consensus 460 ~~-s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l-~~~~--- 533 (737)
.. .++.+++++ ++.++.||..+|+.+..+.... .+.......++.+++++.++.++.+|..+|+.+... ....
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 44 377777776 9999999999999988887522 221111222336777778889999999999998774 3221
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC--CCCCeEEEEEecCCCEEEEEecCcEEEEe
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYE 611 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~~~dg~I~iwd 611 (737)
..........++..++.+..++.|..+|+++++........ ......+ ....+..-....++..++++.++.+.-+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 11222333334788899998999999999998765544432 1111000 00112222233345334445677544449
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEE
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 664 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~ 664 (737)
+.+++.+.... ...+.. ...+++..|+.++.++.|..||+++|+.++.
T Consensus 190 ~~tg~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 190 LATGEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTTEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 99998664332 122222 1456788888888999999999999998764
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=5.7e-08 Score=94.07 Aligned_cols=261 Identities=13% Similarity=0.134 Sum_probs=162.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---- 462 (737)
..+.|++|.|...|.||++|...|.|.++.-....--.-+....+ +-.+++-..+.. + .-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF--Qshe~EFDYLkS-l---eieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF--QSHELEFDYLKS-L---EIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh--cccccchhhhhh-c---cHHHHhhheeeecCCC
Confidence 467899999999999999999889999987543210000000000 000000000000 0 124567788887
Q ss_pred -CCEEEEEeCCeEEEEECCCCc------------------------------------------EEEEe-cCCCCCeEEE
Q 004683 463 -GSHLFSASGGKISIFSLETFQ------------------------------------------TLATF-ANPPPIATYF 498 (737)
Q Consensus 463 -~~~l~s~sdg~i~vwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~ 498 (737)
..+|+++.|.+|++|.+.... +.+.+ ..|.-.+.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 346777779999999874320 00111 2466667889
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCc---EEEEEcCC-----CcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCcee
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKL 568 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~---~~~~l~~~-----~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~ 568 (737)
.+..|. .++++ .|-.|.+|++.--. .+..++.| +.-|++..|+|. ...+...+..|.|++-|++....-
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 998888 66665 47899999876322 12233433 346888999995 455666778999999999842110
Q ss_pred -eceeee---------ecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCC-CceeEEecCCC----------CC
Q 004683 569 -CSKFLH---------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDK----------MD 627 (737)
Q Consensus 569 -~~~~~~---------~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~-~~~~~~~~~~~----------h~ 627 (737)
....+. .+..+-. ..|..+.|+++|+++++-.--+|.|||++. ..++.++.-+. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred cCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 000000 0111112 578889999999999987778999999975 34666653211 02
Q ss_pred CCe---EEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 628 LPI---TYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 628 ~~v---~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
..| ..+.||-|.+.+++|+..+..-+|-..
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 223 357888899999999988887777643
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=1.8e-05 Score=80.03 Aligned_cols=213 Identities=19% Similarity=0.118 Sum_probs=133.2
Q ss_pred EEEEe--CCE-EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc-CCCeEEEEECCCeEEEEecCCCcEEEEEcC-
Q 004683 458 CFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 531 (737)
Q Consensus 458 ~v~~s--~~~-l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~- 531 (737)
+++|. .+. +++-. .+.|..|+..++.... +.... ...+++. +++.++.+..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 35565 333 34433 7899999998775543 33222 5677777 566666666544 45559998865443332
Q ss_pred ----CCcceEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 532 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 532 ----~~~~v~~l~~sp~g~~l~s~s~d--------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.....+.+++.|+|++.++.... |.|..++.. ++. ..+ ..+- ...+.++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~~---~~~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TVV---ADGL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EEE---EEEE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE---EEE---ecCc----ccccceEECCcchhe
Confidence 34668899999999977776543 457777766 221 111 1111 457899999999988
Q ss_pred EEE--ecCcEEEEeCCCCce----eEEe-cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccC
Q 004683 600 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 672 (737)
Q Consensus 600 ~~~--~dg~I~iwd~~~~~~----~~~~-~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~ 672 (737)
+++ ..+.|..|++..... ...+ ......+..-.+++..+|++.++....+.|.+++.. |+.+..+...
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 763 678899999853221 1222 111112347889999999988888889999999988 8888877642
Q ss_pred CCCccCceeeEEEEEc-cCCCC-EEEE
Q 004683 673 PGTISLELYPLVIAAH-PLEPN-RIAL 697 (737)
Q Consensus 673 ~g~~~~~v~~~~v~~s-p~d~~-~las 697 (737)
. -.+++++|. | +.+ +++|
T Consensus 224 ----~--~~~t~~~fgg~-~~~~L~vT 243 (246)
T PF08450_consen 224 ----V--PRPTNCAFGGP-DGKTLYVT 243 (246)
T ss_dssp ----S--SSEEEEEEEST-TSSEEEEE
T ss_pred ----C--CCEEEEEEECC-CCCEEEEE
Confidence 1 135689994 5 444 4444
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=1e-05 Score=81.25 Aligned_cols=216 Identities=18% Similarity=0.109 Sum_probs=143.0
Q ss_pred CEEEEEe--CCeEEEEECCCCcEEEEecCCCCCe--EEEEEcCCC-eEEEEEC-----CCeEEEEecC-CCcEEEEEcCC
Q 004683 464 SHLFSAS--GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKGH 532 (737)
Q Consensus 464 ~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~s~~~-~l~sgs~-----dg~I~vwd~~-~~~~~~~l~~~ 532 (737)
..++.+- .....+||..+++....+....+.- -.-.|++|| +|++.-. .|.|-|||.. +-+.+..+..|
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 3444444 3457788998888887765443322 245799999 7776543 4689999998 66778888888
Q ss_pred CcceEEEEEeCCCCEEEEEe------------------CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 533 QNRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s------------------~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
.-....+.+.|||+.|+++. .+-++...|..+++......+. ...|. ..|..+++.+
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~~ 172 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVDG 172 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEecC
Confidence 77778899999998777653 2334566677776554433321 12233 6899999999
Q ss_pred CCCEEEEE-ecC-------cEEEEeCCCCceeEEecCC-----CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCe
Q 004683 595 DQIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE 660 (737)
Q Consensus 595 ~g~~l~~~-~dg-------~I~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~ 660 (737)
+|..++.. ..| -|.+++. +..+..+... .-.+.+-+|++++++.++++.| ..|.+.+||..+++
T Consensus 173 ~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 99887764 222 2444543 3333333221 1257899999999999887655 46889999999999
Q ss_pred eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 661 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
.+...... . ++.++..+ ++ +++|.+.
T Consensus 251 ~~~~~~l~----------D--~cGva~~~-~~-f~~ssG~ 276 (305)
T PF07433_consen 251 LLGSVPLP----------D--ACGVAPTD-DG-FLVSSGQ 276 (305)
T ss_pred EeeccccC----------c--eeeeeecC-Cc-eEEeCCC
Confidence 88876532 1 33676666 44 5555543
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=1.1e-05 Score=80.96 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=144.7
Q ss_pred eEEEEEec-CCCEEEEEECCCc-EEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 391 VVRLIYSH-SGDFLVALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 391 V~~v~fsp-dg~~L~s~s~dg~-i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
...++.+| .+..++.+-.-|+ ..+||.. ++.....+.......-.-.-.|| |++|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~---------------------~g~~~~~~~a~~gRHFyGHg~fs~dG~~L 65 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCR---------------------TGQLLQRLWAPPGRHFYGHGVFSPDGRLL 65 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcC---------------------CCceeeEEcCCCCCEEecCEEEcCCCCEE
Confidence 34678888 4555666666554 3445544 44333322211011111135688 8888
Q ss_pred EEEe------CCeEEEEECC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEE------------------CCCeEEEEec
Q 004683 467 FSAS------GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------DDSSILVHCP 520 (737)
Q Consensus 467 ~s~s------dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs------------------~dg~I~vwd~ 520 (737)
++.- .|.|-|||.. +.+.+..+..|.-.-..+.+.||| .|+++- .+..+...|.
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 8864 3789999998 677888888777666788899999 766652 2235667788
Q ss_pred CCCcEEEEEc----CCCcceEEEEEeCCCCEEEEEeCCCc-------EEEEeCCCCceeeceeeeecccCCCCCCCCeEE
Q 004683 521 CTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 589 (737)
Q Consensus 521 ~~~~~~~~l~----~~~~~v~~l~~sp~g~~l~s~s~dg~-------I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 589 (737)
.+|+.+.... -|+..|..+++.++|..++..-..|. |-+++....-.....+.. ....-. ..+-+
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~-~~~~l~---~Y~gS 221 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEE-QWRRLN---GYIGS 221 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChH-HHHhhC---CceEE
Confidence 8888877643 37788999999999976665544432 334433321000000000 000111 57889
Q ss_pred EEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 590 IQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 590 l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
|+++++|..+++ | ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+. |.+
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC-ccE
Confidence 999999998887 4 77899999999999887663 3456777776666 6665544 443
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=7.5e-06 Score=88.84 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=115.1
Q ss_pred CCeEEEEEecCCCE-EEEEECC-CcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 389 GRVVRLIYSHSGDF-LVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 389 ~~V~~v~fspdg~~-L~s~s~d-g~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
+.+....|||||+. ++..+.+ +.-.|| ++|..+++...... ..+......|+ |+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-------------------v~dl~tg~~~~lt~---~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLY-------------------KYNLYTGKKEKIAS---SQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEE-------------------EEECCCCcEEEEec---CCCcEEeeEECCCCC
Confidence 37789999999985 6655554 233333 34444444333221 33445567788 66
Q ss_pred EEEEEe--C--CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-CC--eEEEEecCCCcEEEEEcCCCcce
Q 004683 465 HLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 465 ~l~s~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg--~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
.++... + ..|.++|+.+++.. .+..+........|+||| .|+..+. .+ .|+++|+.+++..+.... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 665443 3 57888898877644 344333333456899999 6665553 33 688889988776443321 11
Q ss_pred EEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-e--
Q 004683 537 TCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H-- 603 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~d---------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~-- 603 (737)
....|+|||+.++..+.. ..|.+.|+.++.. +. +..+ .......|+|||+.++. + .
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~---LT~~-----~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RR---LTAN-----GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EE---CCCC-----CCcCCeEECCCCCEEEEEEccCC
Confidence 124899999998877654 2678888887532 12 2222 12235889999998876 3 2
Q ss_pred cCcEEEEeCCC
Q 004683 604 EGQIDVYEAPT 614 (737)
Q Consensus 604 dg~I~iwd~~~ 614 (737)
...+.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 23477777743
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=2.3e-08 Score=98.28 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=122.5
Q ss_pred EEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 497 YFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 497 ~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
.++|+-+- +-++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...++.+..|+..|.|..+|++....-...+.+
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 33665432 225556678889999988743 3444 5678999999998999999999999999999985443344444
Q ss_pred ecccCCCCCCCCeEEEEEec-CCCEEEE-EecCcEEEEeCCCCce---eEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 575 SFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp-~g~~l~~-~~dg~I~iwd~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
.+..+ ..|+++..-. ++.+|.+ +.+|+|.+||.+.-++ ++++.+|.....-.-+-..+....++++++|.
T Consensus 294 rlyh~-----Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 294 RLYHD-----SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEEcC-----cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCee
Confidence 34333 6788887766 5666666 5999999999987666 88887743333333444567778999999999
Q ss_pred eEEEEEcCCCeeEEEEecc
Q 004683 650 HVKVFDTSTLELRCQINLT 668 (737)
Q Consensus 650 ~I~vwd~~~~~~~~~~~~~ 668 (737)
..+||.+..|.++.+++..
T Consensus 369 ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEEecccCceeeccCCC
Confidence 9999999999999988643
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=2.9e-05 Score=78.42 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=141.1
Q ss_pred EEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE
Q 004683 393 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 469 (737)
Q Consensus 393 ~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~ 469 (737)
++.|.+ +|.++++--..+.|..|+..+. ...... ... ...+++. +..++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---------------------~~~~~~----~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---------------------EVEVID----LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---------------------EEEEEE----SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---------------------eEEEEe----cCC-CceEEEEccCCEEEEE
Confidence 578888 6665555556778877765532 221111 112 5566666 6667777
Q ss_pred eCCeEEEEECCCCcEEEEecC-----CCCCeEEEEEcCCC-eEEEEECC--------CeEEEEecCCCcEEEEEcCCCcc
Q 004683 470 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 535 (737)
Q Consensus 470 sdg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~-~l~sgs~d--------g~I~vwd~~~~~~~~~l~~~~~~ 535 (737)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|..++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 756666669988865444432 33467899999999 66665543 568888877 55444333 3456
Q ss_pred eEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCc--eeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEe
Q 004683 536 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 611 (737)
Q Consensus 536 v~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd 611 (737)
.+.++|+|+++.|+ +-+..+.|..+++.... ......+..+.... +..-.+++.++|+..++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998765 55667889999986422 21122222122221 247789999999877774 789999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 646 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs 646 (737)
.+ |+.+..+..+ ...+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 97 8888888764 3589999995 7777666544
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=1.7e-07 Score=94.34 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=109.2
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE----EecCcEEEEe
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVYE 611 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~----~~dg~I~iwd 611 (737)
...+..++.+++++++..+....+++.+.... ..+.+....-. ...+.+.+..+...+.+ +....+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-----cCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 44556788889999998888887888776432 11222211111 23445555555544443 2335667777
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
...+.+...+ +|-.-++.++|+||+++++++..|..|+|-.....-.+..+.. ||+. +|..++.-+
T Consensus 139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH~e---FVS~isl~~-- 204 (390)
T KOG3914|consen 139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GHKE---FVSTISLTD-- 204 (390)
T ss_pred ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------ccHh---heeeeeecc--
Confidence 6655554333 4788999999999999999999999999988887666666543 5433 344666665
Q ss_pred CCEEEEEECCCcEEEEecCCCcee
Q 004683 692 PNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
+..|++||.|++|++||+.+++..
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 467999999999999999999865
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4e-07 Score=92.63 Aligned_cols=252 Identities=18% Similarity=0.074 Sum_probs=171.8
Q ss_pred CCCCeEEEEEe-CCEEEEEe-CCeEEEEECCC--C-cEEEEecCCCCCeEEEEEcCCC-eEEEEEC-CCeEEEEecCCCc
Q 004683 452 PKDSISCFALR-GSHLFSAS-GGKISIFSLET--F-QTLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKK 524 (737)
Q Consensus 452 h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg~I~vwd~~~~~ 524 (737)
|.+.|+.+... .+++.+++ ||.++.|--.. | +.+..+..|...|.+++.+-++ .+.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 88899999888 99999999 99999997543 2 3445566888889999999999 8888777 9999999998765
Q ss_pred EEEEEcC--CCcceEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 525 TKAKLKG--HQNRITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 525 ~~~~l~~--~~~~v~~l~~sp~g---~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.+..++. ..+.+.. ..++.. ...++.-.++.+.++|-....+ +..-+..-|. .+|..+.+.|.+..+
T Consensus 88 minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~---sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHF---SPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceeccccc---CceEEEEeeccccce
Confidence 5433332 1222221 112211 2233344578999999876321 1111344455 799999999999988
Q ss_pred EEE-ecCcEEEEeCCC------CceeEEecC-------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 600 LSI-HEGQIDVYEAPT------LNHTSQLVP-------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 600 ~~~-~dg~I~iwd~~~------~~~~~~~~~-------~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
++. ..|-|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..+|+++..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 885 779999998862 111111111 112567789999999999999999999999999999887665
Q ss_pred eccccc----C----------CC----------CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 666 NLTAYA----Q----------PG----------TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 666 ~~~~~~----~----------~g----------~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
.-.... + .| .++. ..-+.+.|.. .+++|.-|+-=| |+|.++.+++.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~-~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS-TVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcC-cccceeEEcC-CCCEEEeeccee-EEEEEeecCeE
Confidence 421100 0 00 0111 1124677887 688888887654 88888888753
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=3e-06 Score=91.79 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=169.2
Q ss_pred CCCeEEEEEe-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCC------------C-eEEEEECCCeEEEE
Q 004683 453 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ------------D-LFAFGFDDSSILVH 518 (737)
Q Consensus 453 ~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~------------~-~l~sgs~dg~I~vw 518 (737)
...-.++.|+ +.++|.|+...|.+-|..+-+.++.+.-|...|+.+.|.|- . .+|++...|.|.+|
T Consensus 15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 3446678899 99999999999999999999999999999999999999762 2 67888889999999
Q ss_pred ecCCCcEEEEEcCCCcceEEEEEeC---CC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 519 CPCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 519 d~~~~~~~~~l~~~~~~v~~l~~sp---~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
|...+..+..+..|..++..+.|-+ +. ..++.-..-.++.+|+..+|+..... ..+| ....++.+.|
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~----~iLs~f~~DP 165 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSH----EILSCFRVDP 165 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCC----cceeeeeeCC
Confidence 9999988888998999999999965 33 45666677789999999997654332 2233 3455677777
Q ss_pred CC-CEEEE-EecCcEEEEeCCC-------CceeEEecCC--------------CCCC---------CeEEEEEccCCCEE
Q 004683 595 DQ-IHLLS-IHEGQIDVYEAPT-------LNHTSQLVPD--------------KMDL---------PITYATYSCDGKCI 642 (737)
Q Consensus 595 ~g-~~l~~-~~dg~I~iwd~~~-------~~~~~~~~~~--------------~h~~---------~v~~~~~sp~~~~l 642 (737)
-. +.+.. +..|.+.+-+.-. ++..+.-..+ .+.. ....++|+|.-+.+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 43 44444 5666666555321 2222111110 0000 11235678876666
Q ss_pred EEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC-CCCEEEEEECCCcEEEEecCC
Q 004683 643 YVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 643 ~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~V~iWd~~~ 711 (737)
+-......+.|+|++-...+.+.... .+.+. -+.|-|+ ....|.+.-.||.+.||--+.
T Consensus 246 lfi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 65666788999999988877776543 22233 3455551 345799999999999998766
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=9.7e-07 Score=89.08 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCc----EEEEecCCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCCcEEEEEcCCC
Q 004683 463 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~~~~~~l~~~~ 533 (737)
++++|++. +....+++..... .+... .....-+++.+..+. .+..+.. ...+.+|....+.+. .+-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhh
Confidence 55666666 4555555553322 22222 222233445555555 4444433 345556665554443 445699
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~ 612 (737)
+.+..++|+||+++++++..|..|++-.... ...+..+.-||. .-|..++.-++.. |++ |.|++|++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999987766 456666778888 7899999998765 555 79999999999
Q ss_pred CCCceeEEe
Q 004683 613 PTLNHTSQL 621 (737)
Q Consensus 613 ~~~~~~~~~ 621 (737)
.+|+.+.++
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999988765
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=4.1e-08 Score=106.94 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=140.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCC-eEEEEecCC-C
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K 523 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg-~I~vwd~~~-~ 523 (737)
.|+...+|++|+ .++|+.|+ .|.|+++++.+|.......+|...|+.+.-+.+| +|.+++... -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 578889999999 77899999 9999999999999999999999999999999999 444444444 577899764 4
Q ss_pred cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe
Q 004683 524 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 603 (737)
Q Consensus 524 ~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~ 603 (737)
...++|.+ -.++.|+.....-+.|+......+||+.++ .++.+...+.......-++..|+|+.+.++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-----~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTC-----SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccC-----cHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 55565553 356788776555566666678899999994 3343322221111133467889999887763
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
|| .+||++..+.++.|.. -.--..-.|+|+|.-++..++ |||++|-++++..+
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 33 3899988877776632 112223468999999988764 79999988776654
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=4.2e-07 Score=86.28 Aligned_cols=198 Identities=11% Similarity=0.042 Sum_probs=121.2
Q ss_pred eEEEEEcCCCeEEEEECCCeEEEEecCCCcE------------EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 004683 495 ATYFILLPQDLFAFGFDDSSILVHCPCTKKT------------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 562 (737)
Q Consensus 495 v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~------------~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl 562 (737)
++.+.++.+..|+++..++.+.....-++.+ .+.+..|+++-.+-+.+--++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 4555555444677777776666555443332 2333344444444444445678999999999999998
Q ss_pred CCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE------ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 563 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
+... ...++++..|. .-.+.+....++.+.++ .-+..+.|+++..+....-.. ....|++++-+
T Consensus 119 ~~~~----~~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDL----ALMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSH 188 (319)
T ss_pred hHHH----hhhhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCC
Confidence 7511 11111222221 22234444456666653 234566776654332211111 13448899999
Q ss_pred cC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 637 CD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 637 p~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
|. .+.+++|++||.+-+||.+.......+.. . |...++ .+-|||.++..|.++++||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~------a-hk~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK------A-HKAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHH------H-hhhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 84 56677899999999999988733222211 1 255577 9999999999999999999999999874
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=1.1e-06 Score=83.51 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=102.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 465 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 465 (737)
|+++-.+-+.+-.++.++++..||.+.+.+.+... ........ .|.+.....-.+ ++.
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~---------------~~~~~i~~------~~~~~as~~~~~~~~~ 146 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL---------------ALMSRIPS------IHSGSASRKICRHGNS 146 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHH---------------hhhhhccc------ccccccccceeecccE
Confidence 44444444555566779999999999998866311 11111000 122221111122 555
Q ss_pred EEEEeC------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcE-EEEEcCCCcce
Q 004683 466 LFSASG------GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 536 (737)
Q Consensus 466 l~s~sd------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v 536 (737)
+.++.- +..+.|+++..+....-......|.+++-+|.. .+++|+.||.+.+||.++... ...++.|+.++
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 555442 456677765433322222223348899999977 888999999999999988743 34567799999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEeCCC
Q 004683 537 TCLAYSL-SLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 537 ~~l~~sp-~g~~l~s~s~dg~I~lwdl~~ 564 (737)
+.+-|+| ++..|++++.||.+.-||..+
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999 678899999999999999886
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.2e-06 Score=85.15 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=135.9
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc-E----EEEEcCCC------------cceEEEEEeCCC--CEEEEE
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-T----KAKLKGHQ------------NRITCLAYSLSL--NVLVSS 551 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~-~----~~~l~~~~------------~~v~~l~~sp~g--~~l~s~ 551 (737)
...|+++.|...| ++++|...|.|.+|.-.... | ...|++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3468899999999 99999999999999755332 1 22345553 357788887654 357777
Q ss_pred eCCCcEEEEeCCCCcee--------------------e-----------------ceeeeecccCCCCCCCCeEEEEEec
Q 004683 552 GADAQLCVWDAVGWKKL--------------------C-----------------SKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 552 s~dg~I~lwdl~~~~~~--------------------~-----------------~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
+.|.+|++|.+...... . ..+-+.....|. ..|.++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~---yhiNSiS~Ns 182 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP---YHINSISFNS 182 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce---eEeeeeeecC
Confidence 88999999987652100 0 000000012232 6788999999
Q ss_pred CCCEEEEEecCcEEEEeCCCCc---eeEEecCCCC---CCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeE-----
Q 004683 595 DQIHLLSIHEGQIDVYEAPTLN---HTSQLVPDKM---DLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELR----- 662 (737)
Q Consensus 595 ~g~~l~~~~dg~I~iwd~~~~~---~~~~~~~~~h---~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~----- 662 (737)
|...++++.|-.|.+|++.--. -+..++++.- ..-|++..|+|. ...+...+..|.|++-|++...+-
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 9999999999999999986422 1223333110 345888999995 455556777899999998843211
Q ss_pred -EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 663 -CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 663 -~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.....-.....+-+.....+..+.|+| +|+++++-+ =-+|+|||+...
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEec-cceEEEEecccc
Confidence 000000000000001111245899999 788888764 358999999764
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=9.1e-05 Score=72.29 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=128.1
Q ss_pred CCEEEEEeCCeEEEEECCCC--cEEEEec---CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-----
Q 004683 463 GSHLFSASGGKISIFSLETF--QTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----- 531 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~----- 531 (737)
|+.||...|..|.+-..++. ..+.+.+ .....-.-++|+||+ .||.+...|+|+++|+.. ..+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC
Confidence 77777777877777665442 2223322 223345789999999 999999999999999875 33333332
Q ss_pred --CCcceEEEEEeCC------CCEEEEEeCCCcEEEEeCCCCc---eeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 532 --HQNRITCLAYSLS------LNVLVSSGADAQLCVWDAVGWK---KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 532 --~~~~v~~l~~sp~------g~~l~s~s~dg~I~lwdl~~~~---~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
-...|..+.|.+. ...|++...+|.++-|-+..+. ........ +...+. ..|.++.++|..+.|+
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp---~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYP---HGINSAVYHPKHRLLL 163 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCC---CceeEEEEcCCCCEEE
Confidence 1245666666442 1246677778888877654321 11112222 222223 6899999999988888
Q ss_pred EE--e---cC-------cEEEEeCCCCceeEE--------------------ec------C-CCCCCCeEEEEEccCCCE
Q 004683 601 SI--H---EG-------QIDVYEAPTLNHTSQ--------------------LV------P-DKMDLPITYATYSCDGKC 641 (737)
Q Consensus 601 ~~--~---dg-------~I~iwd~~~~~~~~~--------------------~~------~-~~h~~~v~~~~~sp~~~~ 641 (737)
++ . ++ .+.-|.+-++.+... +. . ......|..+..||||+.
T Consensus 164 VgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~ 243 (282)
T PF15492_consen 164 VGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL 243 (282)
T ss_pred EeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence 73 1 11 255665432221110 00 0 112567899999999999
Q ss_pred EEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 642 IYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 642 l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
||+...+|.|.+|++.+-++......
T Consensus 244 La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 244 LACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999887777654
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00022 Score=68.25 Aligned_cols=140 Identities=13% Similarity=0.046 Sum_probs=91.6
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF 477 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vw 477 (737)
.++++.||..+.+.--|..++.. +|... -...+.+-+.- |++++.|. .|.+++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFL 78 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEE
Confidence 35667777777766555443322 34422 23445555555 89999999 8999999
Q ss_pred ECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCc
Q 004683 478 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 478 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~ 556 (737)
+..+|.....+..-+.--......+++ .+..|+.|++.+..|.++..++...+...+...+-+..|-...+..+...|.
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 999998888776443322344567788 9999999999999999999888877654444444556663333444444555
Q ss_pred EEEEeCC
Q 004683 557 LCVWDAV 563 (737)
Q Consensus 557 I~lwdl~ 563 (737)
|.--..+
T Consensus 159 vlavt~~ 165 (354)
T KOG4649|consen 159 VLAVTKN 165 (354)
T ss_pred EEEEccC
Confidence 4433333
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=0.00011 Score=74.86 Aligned_cols=268 Identities=19% Similarity=0.226 Sum_probs=156.9
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEeeccCCccccccccee
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 430 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~----------dg~i~iWd~~~~~~~~g~~~~~ 430 (737)
+.+.+.|.+. ++..-. ++ .+-.-.+..||||+.+++++. ...|.+||..
T Consensus 17 ~rv~viD~d~----~k~lGm-i~----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~------------ 75 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGM-ID----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ------------ 75 (342)
T ss_dssp EEEEEEETTT----TEEEEE-EE----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT------------
T ss_pred ceEEEEECCC----CcEEEE-ee----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC------------
Confidence 3577777664 333222 11 233455778999999887653 2245555544
Q ss_pred eeeEEeecCCCeeeeeccCC-CC----CCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 431 MESQLYQPSSKLVMTNDIAA-DP----KDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 431 ~~~~l~~~~~~~~~~~~~~~-~h----~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
+-........- +| .......+++ |++++... ...|.|-|+..++.+..+.... |...
T Consensus 76 ---------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i 142 (342)
T PF06433_consen 76 ---------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI 142 (342)
T ss_dssp ---------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE
T ss_pred ---------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE
Confidence 33322211100 00 0112234565 77777665 4788999999888888776332 3333
Q ss_pred cCCC--eEEEEECCCeEEEEecC-CCcEEEEE----cCCCcce-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004683 501 LPQD--LFAFGFDDSSILVHCPC-TKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 501 s~~~--~l~sgs~dg~I~vwd~~-~~~~~~~l----~~~~~~v-~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~ 572 (737)
-|.+ .+.+-|.||.+....+. .|+..... .....++ ..-++...+..++-.+.+|.|+--|+.........+
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc
Confidence 3444 67788889999888887 45554322 1112222 233455566667768899999999988755433333
Q ss_pred eeecc-----cCCCCCCCCeEEEEEecCCCEEEE----EecC-------cEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 573 LHSFQ-----TGLVPETTIVNHIQFHPDQIHLLS----IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 573 ~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~----~~dg-------~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
..-.. .+-.| +.-.-+++++....|.+ +.++ .|.++|+.+++.+.++.. ...+.++..+
T Consensus 223 ~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vs 297 (342)
T PF06433_consen 223 WSLLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVS 297 (342)
T ss_dssp EESS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEE
T ss_pred ccccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEc
Confidence 32111 01111 34556888887665554 2222 499999999999999865 4567899999
Q ss_pred cCCC-EEEEE-ecCCeEEEEEcCCCeeEEEEec
Q 004683 637 CDGK-CIYVS-CKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 637 p~~~-~l~sg-s~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+.+ +|++. ..++.+.+||..+|+.+.++..
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8665 66554 4579999999999999988864
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=0.00016 Score=80.69 Aligned_cols=290 Identities=13% Similarity=0.088 Sum_probs=165.4
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe--EEEEEeC-CEEEEEe-CCeEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS 475 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V--~~v~~s~-~~l~s~s-dg~i~ 475 (737)
+..++.++.++.+.-.|..+++. +|..+.+.... .....+ ..++..+ ..++.++ +|.|+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence 33467777788888888775543 46544332100 000111 1123334 6777777 89999
Q ss_pred EEECCCCcEEEEecCCCCC-----e-EEEEEcCCCeEEEEE---------CCCeEEEEecCCCcEEEEEcCCCc------
Q 004683 476 IFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------ 534 (737)
Q Consensus 476 vwd~~~~~~~~~~~~~~~~-----v-~~~~~s~~~~l~sgs---------~dg~I~vwd~~~~~~~~~l~~~~~------ 534 (737)
.+|.++|+.+..+...... + .+..+. ++.++.++ .++.+..+|..+|+.+-.+.....
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~ 202 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP 202 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence 9999999999887643321 1 111221 24444543 367899999999998876643211
Q ss_pred --------------ce-EEEEEeCCCCEEEEEeCCC------------------cEEEEeCCCCceeeceeeeecc----
Q 004683 535 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSFQ---- 577 (737)
Q Consensus 535 --------------~v-~~l~~sp~g~~l~s~s~dg------------------~I~lwdl~~~~~~~~~~~~~~~---- 577 (737)
.+ .+.++.+.+..++.++.++ .|.-+|..+++..-........
T Consensus 203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 01 1244555567788887665 6888999987765443221000
Q ss_pred cCCCCCCCCeEEEEEecCCC---EEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE--------
Q 004683 578 TGLVPETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-------- 645 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~---~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-------- 645 (737)
..... ..+..+. .-+|. .+++ +.+|.++.+|.++|+.+-..... ...++.+| ..++.+
T Consensus 283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 01000 0011111 11333 3444 47899999999999988765321 11233334 333332
Q ss_pred ----------ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 646 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 646 ----------s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
..+|.+.-.|+.+|+.+...........-..........++. .+..|..++.||.|+.+|..+++..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence 246889999999999988876421000000000111011222 3568888889999999999999999
Q ss_pred eeecC
Q 004683 716 WGKLP 720 (737)
Q Consensus 716 w~~~~ 720 (737)
|....
T Consensus 430 W~~~~ 434 (488)
T cd00216 430 WKFRT 434 (488)
T ss_pred eEEEC
Confidence 99754
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.4e-06 Score=88.88 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=146.0
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCC--C-cEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCCC
Q 004683 490 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 565 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~--~-~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~~ 565 (737)
-|...|+.+..+....+.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+.+|..+.+++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 356667666554444899999999999997432 1 234455678888999999999999999887 999999999874
Q ss_pred ceeeceeeeecccCCCCCCCCeEEEEEecCC--CEEEEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCE
Q 004683 566 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 641 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 641 (737)
.......+.-++ +.+ +...+|.. ..++++ .++.|.++|-....+...+...-|..+|..+.+++-+..
T Consensus 87 DminmiKL~~lP-------g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 87 DMINMIKLVDLP-------GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred chhhhcccccCC-------Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 433222222111 112 12222221 245554 789999999875543322222347999999999999999
Q ss_pred EEEEecCCeEEEEEcCC------CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 642 IYVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 642 l~sgs~dg~I~vwd~~~------~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
+++....|.|.-|.... .++...+....+. -|-......+.++.|+| ++..+++-+.|..|++++..+++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence 99999999999999873 2222222211111 01112223356999999 899999999999999999998863
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=0.00058 Score=76.19 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=138.1
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe-EEEEEeCCEEEEEe---------
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS--------- 470 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V-~~v~~s~~~l~s~s--------- 470 (737)
..++.++.++.|.-+|..+++. +|......... ....+ .+..+.+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~------------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~ 172 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ------------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACG 172 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE------------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCC
Confidence 5677888899998888776544 46544321100 00001 11122234444432
Q ss_pred -CCeEEEEECCCCcEEEEecCCCC--------------------Ce-EEEEEcCCC-eEEEEECCC--------------
Q 004683 471 -GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS-------------- 513 (737)
Q Consensus 471 -dg~i~vwd~~~~~~~~~~~~~~~--------------------~v-~~~~~s~~~-~l~sgs~dg-------------- 513 (737)
+|.+..+|..+|+.+..+..... .+ ...++.+.+ .++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 57899999999998887753211 01 123445555 777777665
Q ss_pred ----eEEEEecCCCcEEEEEcCCCcceE------EEEEe----CCCC---EEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 514 ----SILVHCPCTKKTKAKLKGHQNRIT------CLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 514 ----~I~vwd~~~~~~~~~l~~~~~~v~------~l~~s----p~g~---~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
.|.-+|..+|+.+-.++.-..... ...+. -+|. .++.++.+|.+...|.++++........
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999998877642111110 11111 1343 5778888999999999998765443321
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE------------------EecCcEEEEeCCCCceeEEecCCCCC------CCeEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITY 632 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~------------------~~dg~I~iwd~~~~~~~~~~~~~~h~------~~v~~ 632 (737)
...++.+| +...+. ..+|.+.-.|..+|+.+-+.....+. .+...
T Consensus 331 ----------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 331 ----------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred ----------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 00122223 111111 13577888888888877665432110 11111
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
-.....+..|++++.||.|+.+|..+|+.+.+...
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 11123567899999999999999999999998764
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.42 E-value=5e-06 Score=91.85 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=129.8
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
+..++.|+ ...+..+|+.+.+..+...-..+.|.-+ ..++ .+.+|...|+|.+-|.++.+.++++..|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 45566666 7788899999888877776444455444 3466 899999999999999999999999999999998755
Q ss_pred EeCCCCEEEEEeC---------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-CEEE-EEecCcEEE
Q 004683 541 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLL-SIHEGQIDV 609 (737)
Q Consensus 541 ~sp~g~~l~s~s~---------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~-~~~dg~I~i 609 (737)
. .|+.|++++. |.-|+|||++.-.. -.+++ ++ ....-+.|+|.- ..++ ++..|...+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~-~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQ-FP-------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhc--cCCcc-cc-------cCchhhhhcccccceEEEEecccceee
Confidence 4 6889998875 55689999998321 11222 22 223567788864 3344 478899999
Q ss_pred EeCCC-Cce-eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 610 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 610 wd~~~-~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
-|..+ +.+ ...+..+.....+..+++|++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 98332 122 22222222355699999999999999999999999998
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=4.9e-05 Score=87.02 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=135.0
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..|..++..+..+..+|.|.+-|... ..... -|. -.++|.+++||||+..++..+..+++.+-...
T Consensus 74 ~~fl~d~~~i~v~~~~G~iilvd~et----~~~ei---vg~-vd~GI~aaswS~Dee~l~liT~~~tll~mT~~------ 139 (1265)
T KOG1920|consen 74 VQFLADTNSICVITALGDIILVDPET----LELEI---VGN-VDNGISAASWSPDEELLALITGRQTLLFMTKD------ 139 (1265)
T ss_pred EEEecccceEEEEecCCcEEEEcccc----cceee---eee-ccCceEEEeecCCCcEEEEEeCCcEEEEEecc------
Confidence 34677888889999999998888764 22221 111 36789999999999999999998888664321
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCCCcE-EEEecCCCCCeEEEEEcC
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLP 502 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~ 502 (737)
|++-..+.+.... ...+..-.+.|- ...=+-|+.|.....+...... .....-+ +.=++++|.-
T Consensus 140 -----------f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRg 205 (1265)
T KOG1920|consen 140 -----------FEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRG 205 (1265)
T ss_pred -----------ccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEcc
Confidence 2222111110000 011222233343 1122222222222211111000 0111112 2234789999
Q ss_pred CC-eEEEEE----CC-CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeeceee
Q 004683 503 QD-LFAFGF----DD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 503 ~~-~l~sgs----~d-g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s---~dg~I~lwdl~~~~~~~~~~~ 573 (737)
|| ++|+.. .+ +.|++||.+ |..-.+-....+.-.+++|-|.|..+++-. .|+.|.+|.-++-+ .....+
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l 283 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVL 283 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-cccccc
Confidence 99 887732 23 799999976 543333222334456899999999988754 35678888766521 111111
Q ss_pred eecccCCCCCCCCeEEEEEecCCCEEEE---Eec-CcEEEEeCCCCc
Q 004683 574 HSFQTGLVPETTIVNHIQFHPDQIHLLS---IHE-GQIDVYEAPTLN 616 (737)
Q Consensus 574 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~---~~d-g~I~iwd~~~~~ 616 (737)
. .+... ..+..++|+.++..|++ ... ..|++|-+.+..
T Consensus 284 ~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 P-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred C-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 1 22222 34899999999999997 333 459999987654
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=2.5e-05 Score=86.18 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=130.2
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcc-eEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceee-c
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGWKKLC-S 570 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~-v~~l~~sp~g~~l~s~s~dg~-----I~lwdl~~~~~~~-~ 570 (737)
+|++.+ .++.|+.+|.|.+++- +-+.++.++.+... |..+-...+..+|++.+.|+. +++||++..+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456777 9999999999999883 34555777777766 444444444467888777654 8999997642211 1
Q ss_pred eee---e--ecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCC---CCceeEEecCCCCCCCeEEEEEccCCCE
Q 004683 571 KFL---H--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---TLNHTSQLVPDKMDLPITYATYSCDGKC 641 (737)
Q Consensus 571 ~~~---~--~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~---~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 641 (737)
.++ + +...+. .+.++.+++++.+-+.+|+| .+|.|..+.-. .......+. +....+|+++++..+++.
T Consensus 109 ~c~~~~ri~~~~np~--~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPT--NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCC--CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCce
Confidence 122 1 111221 23789999999998888888 88999888532 111111222 223789999999988887
Q ss_pred EEEEecCCeEEEEEcCCCee-EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeec
Q 004683 642 IYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 642 l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
++-...-..|.+|.+....+ ...+..+ + +...|.++++ ....+++++. ..|.+|+....++.|...
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~--------G--~~lnCss~~~-~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNN--------G--ISLNCSSFSD-GTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccC--------C--ccceeeecCC-CCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 44444456799999884332 2223321 3 3344888988 3444666544 469999988766655544
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=6.5e-07 Score=88.29 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=113.7
Q ss_pred EEEe----CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-----cEEEE
Q 004683 459 FALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAK 528 (737)
Q Consensus 459 v~~s----~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-----~~~~~ 528 (737)
++|+ |-.+.+|.+..|-+-|+++|-. +.|. ..+.|.+..|...+ .+..|+.+|.|..+|++.+ .+.+.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 4676 5555555588999999987643 3333 45678888888877 9999999999999999865 34444
Q ss_pred EcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCc
Q 004683 529 LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 606 (737)
Q Consensus 529 l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~ 606 (737)
+. |.+.|+++..-. ++.+|.+.+.+|.|++||++..++ ...++ -..||.+. ..-.-+-+.+....+++ |.|..
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--~~~V~-qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--KKSVM-QYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--cccee-eeeccccc-ccccccccccccceEEEccCeeE
Confidence 54 889999998776 788999999999999999997432 12244 34566421 11112334455555555 78899
Q ss_pred EEEEeCCCCceeEEecC
Q 004683 607 IDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~ 623 (737)
.+||.++.|..+.++..
T Consensus 370 tRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEEecccCceeeccCC
Confidence 99999999999888754
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.2e-05 Score=74.97 Aligned_cols=240 Identities=19% Similarity=0.093 Sum_probs=143.0
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc
Q 004683 451 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 451 ~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~ 524 (737)
++...|..++|+ ..++..++ +.+|+|.|+++...+..+..+ ..+++++|.-|. .+++|..+|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 578889999999 44678888 999999999999999988887 789999999888 89999999999999998643
Q ss_pred E-EEEEcC--CCcceEEEEE------eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC
Q 004683 525 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 595 (737)
Q Consensus 525 ~-~~~l~~--~~~~v~~l~~------sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 595 (737)
- +..+.+ ...+|..++. .+.|..++..+.+ +..|.+..... ........+.. +...+++.++.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~---~~p~vlele~p---G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE---CLPCVLELEPP---GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---CCCcccccCCC---cceeeeeecCc
Confidence 2 222222 2344444433 2234444444433 34565543111 01110111111 56777777777
Q ss_pred CCEEEEE--ecC---cEE----EEeCCCCceeEEecCCCCCCC-----eEEEEE-ccCCCEEE-EEecCCeEEEEEcCCC
Q 004683 596 QIHLLSI--HEG---QID----VYEAPTLNHTSQLVPDKMDLP-----ITYATY-SCDGKCIY-VSCKSGHVKVFDTSTL 659 (737)
Q Consensus 596 g~~l~~~--~dg---~I~----iwd~~~~~~~~~~~~~~h~~~-----v~~~~~-sp~~~~l~-sgs~dg~I~vwd~~~~ 659 (737)
.+.++.+ .+. +++ --|...|.++........... -+...+ .++.++++ +|...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 6776664 211 111 112223443322211100000 011222 34556665 4555689999999999
Q ss_pred eeEEEEecccccCCCCccCceeeEEEEEccCC-CCEEEEEECCCcEEEEecCC
Q 004683 660 ELRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 660 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d-~~~las~s~Dg~V~iWd~~~ 711 (737)
+.+..+.. +.++. +++....+ +.+|++-+ |..++|+..++
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 99998865 33344 55544433 45677765 45788886643
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=1.6e-05 Score=87.01 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=126.6
Q ss_pred CeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 494 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 494 ~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
.++|++++.. .++-|+.+|.|++++... .. .+...|... .-+|.++++||.||+|.+-.+-+.+.......
T Consensus 41 ~is~~av~~~-~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVHDK-FFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhhcc-eeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 4455555322 899999999999999763 33 333334433 66899999999999999998877443222222
Q ss_pred eecccCCCCCCCCeEEEEEecC-----CCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec
Q 004683 574 HSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 574 ~~~~~~~~~~~~~v~~l~~sp~-----g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
+ .++.+++++|+ .+.+++| ..| +.++.-+-.........+...++|.+++|. |+++|-+++
T Consensus 112 ~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 112 K----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred C----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 2 57999999998 3566664 555 777764311111111222347899999996 788988887
Q ss_pred CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 648 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 648 dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+| |+|||+.+++.+..+.+.. +..........+.|.+ + ..|+.|-. -+|+|..+.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~----~~~R~e~fpphl~W~~-~-~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPS----QSVRPELFPPHLHWQD-E-DRLVIGWG-DSVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCC----CCCCcccCCCceEecC-C-CeEEEecC-CeEEEEEEe
Confidence 77 8999999999888877543 2223345566899988 3 56666644 478888887
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.35 E-value=1.4e-06 Score=59.72 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 523 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 523 ~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
|+++.++.+|.+.|++++|+|++.++++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=8.1e-06 Score=89.31 Aligned_cols=185 Identities=15% Similarity=0.215 Sum_probs=131.3
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE
Q 004683 452 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 452 h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l 529 (737)
..+.++|++++++.++-|. +|.|++++.. |.. .+...|... ..+| ++++|+.||+|.|-.+-+.+...++
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3567888888899999999 8999999976 433 333344433 5678 9999999999999998887776666
Q ss_pred cCCCcceEEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEec
Q 004683 530 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 604 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~-----g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~d 604 (737)
. ...++.+++++|+ .+.+++|+..| +.++.-+--.. ...+. ...+. ++|.++.|. |+++|-..|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~-l~~~e----G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVV-LSEGE----GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--cccee-eecCc----cceEEEEec--CcEEEEecC
Confidence 5 4578999999997 56799999888 77765332100 11111 12222 789999997 678887889
Q ss_pred CcEEEEeCCCCceeEEecCCCC----CCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 605 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
-.|++||+.+++.+..+..+.. ......+.|.++.+ |+.| +..+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 9999999998888776654321 22345678876654 4444 44568888777
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.00033 Score=80.52 Aligned_cols=197 Identities=14% Similarity=0.200 Sum_probs=128.0
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEec----CCC
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP----CTK 523 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~----~~~ 523 (737)
.++.|.++.|. ++.++.+. +|.|.+-|..+... .....-..+|.+++|+||+ .++..+.++++.+-+- -..
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 34689999998 55555555 89998888876543 2223446689999999999 8888887777765432 111
Q ss_pred cE-------------------EEEEcCCC---------------------cceEEEEEeCCCCEEEEEe-----CCCcEE
Q 004683 524 KT-------------------KAKLKGHQ---------------------NRITCLAYSLSLNVLVSSG-----ADAQLC 558 (737)
Q Consensus 524 ~~-------------------~~~l~~~~---------------------~~v~~l~~sp~g~~l~s~s-----~dg~I~ 558 (737)
+. -..|+|.. +.=+++.|--||.++++.. ..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 11 11222111 1123589999999998832 237899
Q ss_pred EEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--E--ecCcEEEEeCCCCceeEEecC--CCCCCCeEE
Q 004683 559 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPTLNHTSQLVP--DKMDLPITY 632 (737)
Q Consensus 559 lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~--~dg~I~iwd~~~~~~~~~~~~--~~h~~~v~~ 632 (737)
+||.+. . ++....... +.-.+++|-|.|..+++ . +|+.|.+|.- +|-....+.. +.....|..
T Consensus 226 V~drEg-~------Lns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 226 VYDREG-A------LNSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred Eecccc-h------hhcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhe
Confidence 999873 1 111111111 34558999999999997 2 6678999986 3433222221 112445899
Q ss_pred EEEccCCCEEEE---EecCCeEEEEEcCCCe
Q 004683 633 ATYSCDGKCIYV---SCKSGHVKVFDTSTLE 660 (737)
Q Consensus 633 ~~~sp~~~~l~s---gs~dg~I~vwd~~~~~ 660 (737)
++|+.++..|++ ......|++|-+.+..
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeE
Confidence 999999999987 4455669999988753
No 323
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.27 E-value=0.0026 Score=71.30 Aligned_cols=293 Identities=13% Similarity=0.041 Sum_probs=159.5
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 478 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd 478 (737)
+..++.++.++.|.-.|..+++. +|...................-..+++.+..++.++ ++.+...|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 34567777778887777765443 455432211000000000000012344545556666 99999999
Q ss_pred CCCCcEEEEecCCCCC-eEEEEEcC---CCeEEEEEC------CCeEEEEecCCCcEEEEEcCCC---------------
Q 004683 479 LETFQTLATFANPPPI-ATYFILLP---QDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ--------------- 533 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~-v~~~~~s~---~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~--------------- 533 (737)
..+|+.+......... -..+.-+| ++.++++.. +|.|.-+|.++|+.+-.+..-.
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 9999998876521110 00111112 444455432 6899999999998876543211
Q ss_pred ----------------cceE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEeCCCCceeeceeeeecccCC
Q 004683 534 ----------------NRIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 534 ----------------~~v~-~l~~sp~g~~l~s~s~d-----g-----------~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
..+. .+++.|...++..+..+ + +|.-.|+++++..-.... . .|
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~--~--~~ 292 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT--T--PH 292 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC--C--CC
Confidence 0111 34666666666665522 2 566678888765433221 1 11
Q ss_pred CC----CCCCeEEEEEecCCC---EEEE-EecCcEEEEeCCCCceeEE--------ecC--CCCC-CC------------
Q 004683 581 VP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQ--------LVP--DKMD-LP------------ 629 (737)
Q Consensus 581 ~~----~~~~v~~l~~sp~g~---~l~~-~~dg~I~iwd~~~~~~~~~--------~~~--~~h~-~~------------ 629 (737)
.. ......-+.+..+|+ .++. ..+|.+++.|-.+|+++.. +.. .... .+
T Consensus 293 D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 293 DEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred CCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 10 001222233335665 4444 4899999999999988622 100 0000 00
Q ss_pred ----------------eEEEEEccCCCEEEEEecC---------------------------------CeEEEEEcCCCe
Q 004683 630 ----------------ITYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTLE 660 (737)
Q Consensus 630 ----------------v~~~~~sp~~~~l~sgs~d---------------------------------g~I~vwd~~~~~ 660 (737)
-..++++|+..+++....+ |.|.-+|+.+|+
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 0125666666665543332 457788888888
Q ss_pred eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 661 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
...+..... ......+.. .+.+++.++.||.++.+|..+++.+|....
T Consensus 453 ~~W~~~~~~---------p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 453 IVWEHKEDF---------PLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeeEecCCC---------CCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 888765321 000001221 345777788899999999999999998854
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00019 Score=78.74 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=116.2
Q ss_pred CCEEEEEe--CCeEEEEECCCCcEEEEecC-CCCCeEE-------------------EEEcCCC-eE-EEEECCCeEEEE
Q 004683 463 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATY-------------------FILLPQD-LF-AFGFDDSSILVH 518 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~~~~~~~~~~-~~~~v~~-------------------~~~s~~~-~l-~sgs~dg~I~vw 518 (737)
|++++.-. +..|-.-+++..++-+.+.- ....+.. +=++||| .+ .+.-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 77887776 56777777776665544431 1111111 2234555 33 233344567788
Q ss_pred ecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC----------------------------------------CCcEE
Q 004683 519 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 558 (737)
Q Consensus 519 d~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~----------------------------------------dg~I~ 558 (737)
|..+.+...++.- ......++++|+|+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 8887766655543 224456778888888776651 23466
Q ss_pred EEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCce------------eEEecCC
Q 004683 559 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH------------TSQLVPD 624 (737)
Q Consensus 559 lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~------------~~~~~~~ 624 (737)
+.|.++........+..++.+ .....+.++|||++++++ .+.+|.|+|+.+.+. +.+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666654100001223334444 467789999999999984 689999999987552 333322
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 625 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 625 ~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.......+|.++|....+-.-|..|-.|++.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33445688999998777888899999999886
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=0.00054 Score=73.54 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=81.2
Q ss_pred CCCeEEEEEe---CCEEEEEe-----CC----eEEEEECCCCcEEE--Eec-CCCCCeEEEEEcCCC-eEEEEECCCeEE
Q 004683 453 KDSISCFALR---GSHLFSAS-----GG----KISIFSLETFQTLA--TFA-NPPPIATYFILLPQD-LFAFGFDDSSIL 516 (737)
Q Consensus 453 ~~~V~~v~~s---~~~l~s~s-----dg----~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~ 516 (737)
.....++.|+ +..+.+.. +| .-.+|++..++..+ ... .....|.|++++|+. .++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3444677888 55555542 33 24567766544322 111 566789999999999 999999999999
Q ss_pred EEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 004683 517 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~ 564 (737)
+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9998766333 323456678999999999999999999999999875
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.18 E-value=5.7e-06 Score=56.65 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=35.9
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEe
Q 004683 482 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 519 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd 519 (737)
|+++.++.+|...|.+++|+|++ .|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 327
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.15 E-value=0.0079 Score=67.43 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=139.8
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-------CC
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GG 472 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-------dg 472 (737)
..++.++.|+.+.-.|..+++. +|+....... ....+. +....+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 4567777888888877765543 5654432110 001111 1122244444442 47
Q ss_pred eEEEEECCCCcEEEEecCCCC-------------------------------Ce-EEEEEcCCC-eEEEEECC-----C-
Q 004683 473 KISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD-----S- 513 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~-------------------------------~v-~~~~~s~~~-~l~sgs~d-----g- 513 (737)
.|..+|.++|+.+..+..-.. .+ ..+++.|.. +++.+..+ +
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 899999999998876542110 11 134666655 55555422 2
Q ss_pred ----------eEEEEecCCCcEEEEEcCCCcceE---------EEEEeCCCC---EEEEEeCCCcEEEEeCCCCceeece
Q 004683 514 ----------SILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 514 ----------~I~vwd~~~~~~~~~l~~~~~~v~---------~l~~sp~g~---~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
.|.-.|++||+..-.++...+.+. -+.+..+|+ .++.++.+|.+++.|.++++.+...
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 677789999998877765322222 223335676 6789999999999999998764211
Q ss_pred eee---eccc------CC---------------C-----C---CCCCeEEEEEecCCCEEEE-Ee---------------
Q 004683 572 FLH---SFQT------GL---------------V-----P---ETTIVNHIQFHPDQIHLLS-IH--------------- 603 (737)
Q Consensus 572 ~~~---~~~~------~~---------------~-----~---~~~~v~~l~~sp~g~~l~~-~~--------------- 603 (737)
+.. .... +. . + +...-..++++|+...+++ ..
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 110 0000 00 0 0 0000112566666555543 11
Q ss_pred ------------------cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 604 ------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 604 ------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
-|.|.-+|+.+++..-+.... .+...-...-.+..++.++.||.++.+|.+||+.+...
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 135777888888876655421 11111112235567888888999999999999999987
Q ss_pred ec
Q 004683 666 NL 667 (737)
Q Consensus 666 ~~ 667 (737)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 64
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.11 E-value=0.002 Score=68.74 Aligned_cols=266 Identities=17% Similarity=0.154 Sum_probs=144.5
Q ss_pred ecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeE
Q 004683 397 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 474 (737)
Q Consensus 397 spdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i 474 (737)
||||++++.... .-+.|.-. ......++|.+++....... ....+....|+ |+.++...++.|
T Consensus 1 S~d~~~~l~~~~--~~~~~r~s----------~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATN--YTKQWRHS----------FKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL 65 (353)
T ss_dssp -TTSSEEEEEEE--EEEESSSE----------EEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred CCCCCeEEEEEC--cEEeeeec----------cceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence 789998888755 23333311 11123567888877665433 24678889999 999999999999
Q ss_pred EEEECCCCcEEEEec-CC----------------CCCeEEEEEcCCC-eEEEEECC-C----------------------
Q 004683 475 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S---------------------- 513 (737)
Q Consensus 475 ~vwd~~~~~~~~~~~-~~----------------~~~v~~~~~s~~~-~l~sgs~d-g---------------------- 513 (737)
.+++..++...+.-. +. -+.-..+.||||+ +||....| .
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES 145 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence 999988775443222 20 1122568899999 77765432 1
Q ss_pred -------------eEEEEecCCCcEEE--EE---cCCCcceEEEEEeCCCCEEEEE--eCCC---cEEEEeCCCCceeec
Q 004683 514 -------------SILVHCPCTKKTKA--KL---KGHQNRITCLAYSLSLNVLVSS--GADA---QLCVWDAVGWKKLCS 570 (737)
Q Consensus 514 -------------~I~vwd~~~~~~~~--~l---~~~~~~v~~l~~sp~g~~l~s~--s~dg---~I~lwdl~~~~~~~~ 570 (737)
.+.++|+.+++... .. ......+..+.|.++++.++.. +.+. .+.++|..++.....
T Consensus 146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~ 225 (353)
T PF00930_consen 146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV 225 (353)
T ss_dssp EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence 23344444443311 11 1234457789999998844433 3332 366678776543211
Q ss_pred eeeeecccCCCCCCCCeEEEEEe-cCCCEEEE-E-ecC--cEEEEeCCCCceeEEecCCCCCCCeEE-EEEccCCCEEE-
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY- 643 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~s-p~g~~l~~-~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~l~- 643 (737)
......+-. ..-....+. +++..++. + .+| .|++++...+... .+.. ..-.|.. +.|+++++.|+
T Consensus 226 --~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~--G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 226 --LEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS--GDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp --EEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SSS-EEEEEEEECTSSEEEE
T ss_pred --EEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--CceeecccceEcCCCCEEEE
Confidence 111111111 122245554 77766554 4 555 5777777665533 4433 2556755 66788877665
Q ss_pred EEecC----CeEEEEEcC-CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 644 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 644 sgs~d----g~I~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
++..+ ..|+.-++. .+. ...+... .... ..+.||| ++++++-
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~--------~~~~--~~~~~Sp-dg~y~v~ 344 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGE-PKCLTCE--------DGDH--YSASFSP-DGKYYVD 344 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTE-EEESSTT--------SSTT--EEEEE-T-TSSEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCC-eEeccCC--------CCCc--eEEEECC-CCCEEEE
Confidence 55543 356666667 444 3444322 1111 3799999 6776654
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.011 Score=56.97 Aligned_cols=307 Identities=12% Similarity=0.077 Sum_probs=153.9
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceee
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
.+++.|+..+.+.--|...+ ...-...+ ..+|.+-+.- -|++++.|...|.+.+-+..++..
T Consensus 24 T~v~igSHs~~~~avd~~sG---~~~We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--------- 85 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG---NLIWEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--------- 85 (354)
T ss_pred eEEEEecCCceEEEecCCCC---cEEeehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---------
Confidence 45667777777777776642 11111112 2334333332 577899999999998888775533
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 509 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg 509 (737)
+|+...-..+ ..-..+++++..+..|+ |++.+..|..+..++.+.+...+...+-+..|-. .|..+
T Consensus 86 ---~w~f~~~~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 86 ---IWNFVILETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ---eeeeeehhhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 4553322111 11123455588999999 9999999999999988877655555555666633 66666
Q ss_pred ECCCeEEEEecCCCcEEEEEcCC--CcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceee----ceeeeecccCCC
Q 004683 510 FDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQTGLV 581 (737)
Q Consensus 510 s~dg~I~vwd~~~~~~~~~l~~~--~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~----~~~~~~~~~~~~ 581 (737)
...|.|.--...++.. .++-.| .+++.+ +| -+..+..+.-||.+.-+| ..++.+. .-++. ...-.
T Consensus 154 ~t~G~vlavt~~~~~~-~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf--~~Pc~ 226 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYSS-TEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIF--MEPCE 226 (354)
T ss_pred eccceEEEEccCCCCc-ceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCcee--ccccc
Confidence 6667665555544421 111111 122221 11 123445555566665555 2222111 11111 00000
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc-cC---CCEEEEEecCCeEEEEEc-
Q 004683 582 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CD---GKCIYVSCKSGHVKVFDT- 656 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-p~---~~~l~sgs~dg~I~vwd~- 656 (737)
.+ .....+.+..++-+.+...-..-.+|..++|...+.+..+. ....++ |. .++|..++.||.+.|.-.
T Consensus 227 s~-Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~ 300 (354)
T KOG4649|consen 227 SR-PSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTS 300 (354)
T ss_pred CC-CcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEec
Confidence 00 00122333333222222222234467777765554443211 122222 22 457778889999988733
Q ss_pred --------CCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 657 --------STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 657 --------~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
..|++....... . ...+...-+.. ++ .|..|+.|..|+-||+.+.
T Consensus 301 ~sl~~~~s~~g~lq~~~~~e-l------~~eIFsSPvii---~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 301 KSLAEISSNGGELQNLEAIE-L------SNEIFSSPVII---DG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred ccccccccCCCccceEEEee-c------CcccccCCeEE---cc-EEEEEEccCeEEEEecccc
Confidence 333322211000 0 01111000000 33 5777888999999999763
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.0069 Score=63.13 Aligned_cols=282 Identities=14% Similarity=0.093 Sum_probs=137.1
Q ss_pred EEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004683 394 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 470 (737)
Q Consensus 394 v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 470 (737)
=+|.+||+.|+.+|. ||.-.+| +.|..+++..+..... + .......++ ++.++-..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly-------------------~lDL~t~~i~QLTdg~-g-~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLY-------------------LLDLATGEITQLTDGP-G-DNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEE-------------------EEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceE-------------------EEEcccCEEEECccCC-C-CCccceEEecCCCeEEEEE
Confidence 467899987777665 6655554 3566677666644311 1 111123334 66665554
Q ss_pred -CCeEEEEECCCCcEEEEecCCCCCeEEEEEc--CCCeEEEEEC-----------------------CCeEEEEecCCCc
Q 004683 471 -GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD-----------------------DSSILVHCPCTKK 524 (737)
Q Consensus 471 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s--~~~~l~sgs~-----------------------dg~I~vwd~~~~~ 524 (737)
+..|+..|+.+.+....+......+....|. .++..++|.. ...|...|+.+|+
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 6789999999988777777666666556664 3443333221 1356667888887
Q ss_pred EEEEEcCCCcceEEEEEeCCCCEEEEEeCCC----c-EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 525 TKAKLKGHQNRITCLAYSLSLNVLVSSGADA----Q-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg----~-I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
....+. ....+..+.|+|....+++=+..| . -|+|-+++.... .+++..-..+ ..+..=-|.|+|..+
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~-----e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG-----ESVGHEFWVPDGSTI 252 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-----EEEEEEEE-TTSS-E
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC-----cccccccccCCCCEE
Confidence 655555 456778899999665555544333 1 255654432111 1222211111 456677899999877
Q ss_pred EE-E-----ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC----------------CeEEEEEcC
Q 004683 600 LS-I-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDTS 657 (737)
Q Consensus 600 ~~-~-----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d----------------g~I~vwd~~ 657 (737)
.- + .+..|.-+|..+++...... .........++||++++-=+.| --|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 64 3 23357778888876543222 2234456667999988753333 157778888
Q ss_pred CCeeEEEEecccc---cCCCCccCceeeEEEEEccCCCCE-EEEEECCCcEEEEecCC
Q 004683 658 TLELRCQINLTAY---AQPGTISLELYPLVIAAHPLEPNR-IALGLTNGRVHVIEPLE 711 (737)
Q Consensus 658 ~~~~~~~~~~~~~---~~~g~~~~~v~~~~v~~sp~d~~~-las~s~Dg~V~iWd~~~ 711 (737)
.+.... +..|.. +..|+.. +.-..+.|+| |+++ |.++...|...||-++-
T Consensus 329 ~~~~~~-l~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 329 AGRFRK-LARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTEEEE-EEE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEEE-
T ss_pred cCceee-eeeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEEeC
Confidence 776543 222321 1222211 1223799999 5665 55666778877776543
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00052 Score=76.15 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=132.2
Q ss_pred CeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCC-eEEEEEcCCC-eEEEEECCC-----eEEEEecCCC---
Q 004683 455 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--- 523 (737)
Q Consensus 455 ~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~--- 523 (737)
.++|+.-++..++.|+ +|.|.+.+- ..+.++.++.+... |..+....+. .|++.+.|+ .+++||++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5665555577888888 899988874 24455777777766 5444444443 666666554 5899998632
Q ss_pred ---cEE--EEEcC-----CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 524 ---KTK--AKLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 524 ---~~~--~~l~~-----~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
.++ ..+.+ ...++.+++++.+-+.+|+|-.+|.|..+.=+- .+.+-.+...... +..+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi---~RDrgsr~~~~~~--~~~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI---LRDRGSRQDYSHR--GKEPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc---hhccccceeeecc--CCCCceeeEEe
Confidence 233 12222 356788999999999999999999999884221 1111111111111 11799999999
Q ss_pred cCCCE-EEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 594 PDQIH-LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 594 p~g~~-l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.+++. +.+.....|.+|.+....+.... ...|+.++.|.++++... ++++++ ..+++|+.....+...+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~-ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKV-LDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceee-eccCCccceeeecCCCCccEEEecC--ceEEEEcCCCcceeeeec
Confidence 99987 44467788999999744422222 234678889999987555 555543 569999988766666664
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00017 Score=73.20 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=77.6
Q ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC-EEEE
Q 004683 474 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVS 550 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~-~l~s 550 (737)
|++.+..+.+....+.++...|..++|+|.. .+..++.+..|++.|+++..++..+..+ ..+++++|.-|.. ++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6677777777777677888899999999988 7889999999999999999888888876 7899999988664 5777
Q ss_pred EeCCCcEEEEeCCCC
Q 004683 551 SGADAQLCVWDAVGW 565 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~ 565 (737)
|...|.|.+||++..
T Consensus 254 Gl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQP 268 (463)
T ss_pred eccCceEEEEEccCC
Confidence 778999999999974
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.05 E-value=0.00076 Score=73.13 Aligned_cols=220 Identities=10% Similarity=0.052 Sum_probs=109.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
......++++|+|++++.+ .||.-.|+....... ...+.-...+|. .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence 3457899999999998884 467776665221100 011223356777 5666
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
|+-. .++|.++.--+....+.+... ..+..+-. | .|...+. +.|.+||+.+++.+..+... +|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 6666 788999643223332233321 12333322 7 6666654 48999999999999998743 4899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC------ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCce-
Q 004683 545 LNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH- 617 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~- 617 (737)
|++++..+.+ .+.+++.+.. +..-...+..+..-. ..|.+.+|..+ -++.+... .|+-+ -.|..
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d-~fiYtT~~-~lkYl--~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED-CFIYTTSN-HLKYL--VNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT-EEEEE-TT-EEEEE--ETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC-EEEEEcCC-eEEEE--EcCCcc
Confidence 9999998855 6777765531 000000111111101 57888889876 33333333 66653 23332
Q ss_pred -eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 618 -TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 618 -~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+..+ ..++.=+.+.|..+.++....|+.|..+.+.
T Consensus 227 ~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 IIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2222 3455566666766677777777777777655
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0011 Score=72.35 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|...|.--+++..++|++.|++-|.+.+|+-..+.. .. ...++..+.+..+..+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~---------------------~~-~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM---------------------RK-LKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh---------------------hc-ccccCccceEEEEEecchhH
Confidence 567788888899999999999999999887553322 11 1111223344445566 55
Q ss_pred EEEEEe-CCeEEEEECCCCcEE-----EEe-cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc----EEEEEcCC
Q 004683 465 HLFSAS-GGKISIFSLETFQTL-----ATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH 532 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~-----~~~-~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~----~~~~l~~~ 532 (737)
++|.|+ .|.|.++-+..+... ... ..|...|+|++|++++ .+++|...|.|..-.+.+.. ..+.+-..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 566666 689999887653221 111 2467899999999999 99999999999988877621 11222224
Q ss_pred CcceEEEEEe
Q 004683 533 QNRITCLAYS 542 (737)
Q Consensus 533 ~~~v~~l~~s 542 (737)
.+.|..+.+.
T Consensus 170 ds~IVQlD~~ 179 (726)
T KOG3621|consen 170 DSEIVQLDYL 179 (726)
T ss_pred CcceEEeecc
Confidence 5566666554
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.02 E-value=0.0026 Score=67.92 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=137.1
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCC--------------CCCeEEEEEecCCCEEEEEEC
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQ 408 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h--------------~~~V~~v~fspdg~~L~s~s~ 408 (737)
....+||||+.+|... ++.|.+++... +...+++..|..+ -+.-..+-|||||++||....
T Consensus 46 ~~~~~sP~g~~~~~v~-~~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVR-DNNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp SEEEE-SSSTEEEEEE-TTEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccceeecCCCeeEEEe-cCceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3445999999999987 57899998764 3444443333000 122357889999999998876
Q ss_pred C-CcEEEeec---cCC-c-c---------cccccceeeeeEEeecCCCeeeeeccC---CCCCCCeEEEEEe--CCEEEE
Q 004683 409 T-ATHKLWKW---QSN-K-Q---------SLEEENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFS 468 (737)
Q Consensus 409 d-g~i~iWd~---~~~-~-~---------~~g~~~~~~~~~l~~~~~~~~~~~~~~---~~h~~~V~~v~~s--~~~l~s 468 (737)
| ..|..+.+ ... . . ..|.....+.+.+++..+++....... ......+..+.|. ++.++.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 4 34443332 221 1 1 345556667778899988876432221 1245668889998 552443
Q ss_pred E-eC-----CeEEEEECCCCcEEEEec-CCCC---CeEEEEEc-CCC--eEEEEECCC--eEEEEecCCCcEEEEEcCCC
Q 004683 469 A-SG-----GKISIFSLETFQTLATFA-NPPP---IATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 469 ~-sd-----g~i~vwd~~~~~~~~~~~-~~~~---~v~~~~~s-~~~--~l~sgs~dg--~I~vwd~~~~~~~~~l~~~~ 533 (737)
. .+ ..+.++|..++....... .... ......+. +++ .+.....+| .|.+++..++. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 3 32 257778888776544433 1122 22355554 666 666666777 56667776665 44565555
Q ss_pred cceEE-EEEeCCCCEEE-EEeCC----CcEEEEeCC-CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 534 NRITC-LAYSLSLNVLV-SSGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 534 ~~v~~-l~~sp~g~~l~-s~s~d----g~I~lwdl~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
-.|.. +.++++++.+. ++..+ ..|..-++. ++. +..+.... ..-..+.|||+|++++.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~------~~~LT~~~----~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE------PKCLTCED----GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE------EEESSTTS----STTEEEEE-TTSSEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC------eEeccCCC----CCceEEEECCCCCEEEE
Confidence 66754 67888877655 44442 245555666 422 22122222 12258999999999986
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.031 Score=57.32 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=131.9
Q ss_pred eEEEEECCCCcEEEEecCCCC-------CeEEEEEcCCC-eEEEE--ECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 473 KISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~-~l~sg--s~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
.|.+||..+-.....+.-... ....++++.|+ ++++. +--..|.|.|+..++.+..+.. .+ ... .+-
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~-iyP 144 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWL-IYP 144 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEE-EEE
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEE-EEe
Confidence 699999999877775542221 12345778888 44443 3445788899988888777652 12 122 221
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEEecCC-CEEEEEecCcEEEEeCCCCcee--
Q 004683 543 LSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSIHEGQIDVYEAPTLNHT-- 618 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~~dg~I~iwd~~~~~~~-- 618 (737)
...+.+.+-|.||++.-..+.. |+.. .+.-. ++..... .....-++...+ .++..+.+|.|+-.|+......
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~-~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTK-VFDPDDD--PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEE-EEEEE-ESSTTTS---B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEe-Eeecc-ccCCCCc--ccccccceECCCCeEEEEecCCEEEEEeccCCccccc
Confidence 1224588889999999888874 3332 12111 2222210 123344555544 5666789999999998654421
Q ss_pred EEecCCC--------CCCCeEEEEEccCCCEEEEEec---C-------CeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 619 SQLVPDK--------MDLPITYATYSCDGKCIYVSCK---S-------GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 619 ~~~~~~~--------h~~~v~~~~~sp~~~~l~sgs~---d-------g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
..+.... -.+.-.-+++++..+.|++--. + ..|.++|+.+++.+.++... ..+
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~ 291 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPI 291 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEE
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------Ccc
Confidence 1221100 0122334677775555554221 1 25888999999999998752 234
Q ss_pred eeEEEEEccCCCCEEEEE-ECCCcEEEEecCCCceeeeec
Q 004683 681 YPLVIAAHPLEPNRIALG-LTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~-s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
. +++.+.++..+|.+. ..++.+.|||..+++..-...
T Consensus 292 ~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 292 D--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp S--EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred c--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 4 777777555577655 457999999999998665554
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0026 Score=69.07 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=115.2
Q ss_pred CCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEE-ecCCCcEEEEE
Q 004683 453 KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVH-CPCTKKTKAKL 529 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vw-d~~~~~~~~~l 529 (737)
......+.++ |+.++.+++|.-.++..........- ....++|.+.+.+|+-...+.|.++ ++. ......+
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-~~~~k~i 105 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSSRNRYAVLESSSTIKIYKNFK-NEVVKSI 105 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-TSSEEEEE-TTS-EEEEETTE-E-TT---
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEecCccEEEEECCCeEEEEEcCc-cccceEE
Confidence 3446678888 88999988999999985544443322 2336789886677777778899996 332 2222233
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEE
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 609 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~i 609 (737)
+. ...+..+-. |..|...+.+ .|.+||..++. .+.++.. .+|..+.|+++|.+++...+..+.|
T Consensus 106 ~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v------~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 106 KL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDV------SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS-------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred cC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEec------CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 31 122333322 7777766644 89999999853 3332322 3489999999999999877778888
Q ss_pred EeCCCC--------------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCC
Q 004683 610 YEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 675 (737)
Q Consensus 610 wd~~~~--------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~ 675 (737)
++.... ..+.++ ...|.+.+|.-+ -++++... .++- +-.|+. ..+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~-~~i~~-------- 230 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYTTSN--HLKY--LVNGET-GIIAH-------- 230 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE-TT--EEEE--EETTEE-EEEEE--------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCc-ceEEE--------
Confidence 876433 222222 456888888766 44444432 5655 444442 22211
Q ss_pred ccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 676 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 676 ~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
-+.+++ =+.+.| ..+.+.....|+.|..+.+...
T Consensus 231 ld~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 231 LDKPLY--LLGYLP-KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -SS--E--EEEEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred cCCceE--EEEEEc-cCCEEEEEECCCCEEEEEECHH
Confidence 144566 455556 4578888888988888877543
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00019 Score=78.84 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=76.9
Q ss_pred CCEEEEEe-----CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 463 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 463 ~~~l~s~s-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
..++++++ .|.|.||- ++|++.+... ..-.+++++|+|.. .|+.|-..|.+.+|...+.+.-.....|..+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 44555544 47788874 4566443332 12245689999999 99999999999999987766555556799999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAV 563 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~ 563 (737)
..+.||++|..++++..-|.|.+|...
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999776
No 339
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.92 E-value=1.2e-05 Score=49.32 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhc
Q 004683 143 EELIYLIHQFLNEEEFKETLHKLEQET 169 (737)
Q Consensus 143 ~evirlI~q~L~e~G~~~s~~~L~~Es 169 (737)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.008 Score=64.80 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=79.7
Q ss_pred CeEEEEEecCC-CEEEE-----EecCc----EEEEeCCCCce--eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 586 IVNHIQFHPDQ-IHLLS-----IHEGQ----IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 586 ~v~~l~~sp~g-~~l~~-----~~dg~----I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
...++.||-.. ..+.+ +.+|. -.+|++...+. +..... .....+.+++++|+...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEE
Confidence 34567777643 33333 13443 45677654432 211111 24778999999999999999999999999
Q ss_pred EEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
||...+..... .....++.++||| +|.++++|++-|.+.+||+.-.
T Consensus 286 yD~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 99987743322 2234567999999 8999999999999999998744
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0037 Score=66.98 Aligned_cols=270 Identities=12% Similarity=0.121 Sum_probs=138.1
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEE
Q 004683 390 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 469 (737)
Q Consensus 390 ~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~ 469 (737)
.|.++.|+++..-|+.|...|.|.||.+...+....+... .-.|.. ...++ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----~~~~~~------------------~~~~~------~ 54 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----PDLDYN------------------FRRFS------L 54 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------S--------G
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----cccCcc------------------ccccc------c
Confidence 5889999999888999999999999987754330000000 000000 00000 0
Q ss_pred eCCeEEEEECCC---------CcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE--cC------C
Q 004683 470 SGGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H 532 (737)
Q Consensus 470 sdg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~------~ 532 (737)
.++.-.+-|+.. ......+....+.|++++.|.-|++|+|..+|.+.|.|++....+..- .. .
T Consensus 55 ~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 55 NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence 001111122211 122333445578999999987779999999999999999877776542 21 2
Q ss_pred CcceEEEEEeC-----CC---CEEEEEeCCCcEEEEeCC--CCceeeceeeeecccCCCCCCCCeEEEE-EecC------
Q 004683 533 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPD------ 595 (737)
Q Consensus 533 ~~~v~~l~~sp-----~g---~~l~s~s~dg~I~lwdl~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~sp~------ 595 (737)
...++++.|.. |+ -.+++|+..|.+.+|.+. .+......... ....+. ++|..+. ++.+
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence 34677888852 33 368899999999999775 11111111111 111122 4454444 3221
Q ss_pred ---------------CCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc-----cCCCEEEEEecCCeEEEEE
Q 004683 596 ---------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-----CDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 596 ---------------g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-----p~~~~l~sgs~dg~I~vwd 655 (737)
..+++++.+..++++...+.+....... .......+++- ..+..|++-..+|.|++|.
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 1245557889999999988877665542 12233344552 3567788888999999999
Q ss_pred cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 656 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
+..-+.+.......... .... ...++++ +|+.++-.+.
T Consensus 289 LP~Lkei~~~~l~~~~d----~~~~--~~ssis~-~Gdi~~~~gp 326 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPPLD----SRRL--SSSSISR-NGDIFYWTGP 326 (395)
T ss_dssp TTT--EEEEEE-SS-------HHHH--TT-EE-T-TS-EEEE-SS
T ss_pred CCCchHhhcccCCCccc----cccc--cccEECC-CCCEEEEeCc
Confidence 99998888776531110 0111 1455566 6776665543
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.88 E-value=0.0024 Score=70.34 Aligned_cols=92 Identities=20% Similarity=0.102 Sum_probs=66.8
Q ss_pred CcEEEEeCCC-----CceeEEecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCee------------EEEEe
Q 004683 605 GQIDVYEAPT-----LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL------------RCQIN 666 (737)
Q Consensus 605 g~I~iwd~~~-----~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~~------------~~~~~ 666 (737)
+.|.+.|..+ ...+..+.. ......+.+||||+++++++. +.+|.|.|+.+.+. .....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 4477778776 344444433 567789999999999886554 89999999988653 22211
Q ss_pred cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 667 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 667 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
.| ..+...+|.+ +|....|.--|..|..|++..
T Consensus 373 ------vG-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 ------LG-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ------cC-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 12 2245789999 788899999999999999986
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=4.6e-06 Score=88.84 Aligned_cols=203 Identities=13% Similarity=0.111 Sum_probs=131.1
Q ss_pred CeEEEEEcCCC---eEEEEECCCeEEEEecCCCcE--EEEEcCCCcceEEEEEeC-CCCEEEEEeC----CCcEEEEeCC
Q 004683 494 IATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGA----DAQLCVWDAV 563 (737)
Q Consensus 494 ~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~~~--~~~l~~~~~~v~~l~~sp-~g~~l~s~s~----dg~I~lwdl~ 563 (737)
.+.|+++.-+. .+++|..+|.|.+-.++...- -....++..+.++++|++ |.+.||.|-. |..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566654433 788999999999988765332 233455778899999998 5566776642 5679999998
Q ss_pred CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEcc-CCC
Q 004683 564 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGK 640 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp-~~~ 640 (737)
+.-........ +..+.. ....+++|-.+.+.+.+| ....++++|++.. .....+ ....+..+..+| .+.
T Consensus 138 s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 138 SLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSPN 209 (783)
T ss_pred cccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCCC
Confidence 85211111111 222122 456689999888888886 6679999999732 222222 244677788888 778
Q ss_pred EEEEEecCCeEEEEEc-CCC-eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC-CcEEEEecCC
Q 004683 641 CIYVSCKSGHVKVFDT-STL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 711 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~-~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~V~iWd~~~ 711 (737)
++++.+ ||.|.+||. ..- .++..+.... .........++|.|+...++++.+.| ++|+.+++..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~------N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNE------NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCC------CCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 888776 999999993 221 1111111000 01112355999999877788888866 6899999864
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=1.2e-05 Score=85.73 Aligned_cols=249 Identities=14% Similarity=0.128 Sum_probs=149.8
Q ss_pred CCCCeEEEEEe---C-CEEEEEe-CCeEEEEECCCCcE--EEEecCCCCCeEEEEEcCCC--eEEEEE----CCCeEEEE
Q 004683 452 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 518 (737)
Q Consensus 452 h~~~V~~v~~s---~-~~l~s~s-dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--~l~sgs----~dg~I~vw 518 (737)
....+.|+++. . -.++.|. +|.|.+-.+....- .....++....++++|++-+ .||+|- .|..+.+|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567777777 2 3466666 89999888764322 22334777789999999976 677663 24579999
Q ss_pred ecCCC--cEEE--EEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 519 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 519 d~~~~--~~~~--~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
|+.++ .+.. .|.+ ......+++|..+.+.+++|...+.+.++|++.... ....+. + ..+..+.+.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn------T---k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN------T---KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh------h---hhcccceec
Confidence 99876 2221 2222 334566888998899999999999999999984210 011111 1 356678888
Q ss_pred c-CCCEEEEEecCcEEEEeC-CCC-ceeEEecCCC--CCCCeEEEEEccCC-CEEEEEec-CCeEEEEEcCCC------e
Q 004683 594 P-DQIHLLSIHEGQIDVYEA-PTL-NHTSQLVPDK--MDLPITYATYSCDG-KCIYVSCK-SGHVKVFDTSTL------E 660 (737)
Q Consensus 594 p-~g~~l~~~~dg~I~iwd~-~~~-~~~~~~~~~~--h~~~v~~~~~sp~~-~~l~sgs~-dg~I~vwd~~~~------~ 660 (737)
| .+.++++..||.|.+||. .+- .++..+.... ....+..++|.|.. ..+++.+. .++|+.+|+..- +
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence 8 788999888999999993 332 2333332111 12348899999843 34555554 488999997521 1
Q ss_pred eEEEEecccccCCCCccCceeeEEEEEccCC-CCEEEEEECCCcEEEEecC
Q 004683 661 LRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d-~~~las~s~Dg~V~iWd~~ 710 (737)
....+......+..+.+..-.+.+..||+.+ -....++...-...-+++.
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1111111110011222212234488898854 2344455455555555554
No 345
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.82 E-value=6.3e-06 Score=62.24 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=37.1
Q ss_pred CCCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcc
Q 004683 1 MNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERT 46 (737)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 46 (737)
++|+|++|.++++...+...... ..+.|.|++|||+|.++.++..
T Consensus 13 ~~g~~~~a~~~~~~~~~~l~~~~-~~l~f~L~~q~~lell~~~~~~ 57 (58)
T smart00668 13 LKGDWDEALEWLSSLKPPLLERN-SKLEFELRKQKFLELVRQGKLE 57 (58)
T ss_pred HcCCHHHHHHHHHHcCHHHhccC-CCchhHHHHHHHHHHHHcCCcC
Confidence 47999999999999998332222 2899999999999999988754
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.81 E-value=0.00038 Score=77.55 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=126.2
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
++..++.|+-...+..+|+.+. ...+...+ ..++|.-+. .+++++.+|...|+|.+-|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v----~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s---------- 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNV----SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS---------- 206 (1118)
T ss_pred CCcceeecchhhheeeeecccc---eeeeeeec----cCCceEEEE--ecCcEEEeecccceEEeecCCc----------
Confidence 5567788887788888888752 22222211 123444444 4678899999999997766553
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-C---------CeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
-+.++.+. .|++.|.++...|+.|++|| . .-|+|||++..+.+.-+.-+.++ .-+.
T Consensus 207 -----------~~~iht~~--aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 207 -----------FETIHTFD--AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred -----------Cceeeeee--ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 33333333 79999998888899999987 3 24889999887766655544333 3567
Q ss_pred EcCCC--eEEEEECCCeEEEEecC---CC-cEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 004683 500 LLPQD--LFAFGFDDSSILVHCPC---TK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 562 (737)
Q Consensus 500 ~s~~~--~l~sgs~dg~I~vwd~~---~~-~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl 562 (737)
|+|.- .+++++..|...+.|.. +- ..+..+....+.+..+.++++|..++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88876 88999999999999833 22 123334444566999999999999999999999999973
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.023 Score=61.64 Aligned_cols=183 Identities=15% Similarity=0.079 Sum_probs=99.8
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE-------cCCCcceEEEEEeCCC
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL 545 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l-------~~~~~~v~~l~~sp~g 545 (737)
.|.+|+.. |+.+.++.-..+.+.++.|+.+..|++-..||.+++||+. |+....+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 59999875 7777776644478999999886666677789999999986 3331111 1111222222333355
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC--CCCCeEE-EEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 546 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 546 ~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~--~~~~v~~-l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
++.-..++.+.+..--.... ..+.+..++..... ....... ..++.+....+. ..++.+.+.+-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33334455554443222110 00111111111000 0001111 234444444333 4555666444332211 2
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
. ..+++..+++||+|++||.-..+|.+.|....-.+....+.
T Consensus 214 ~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 214 D---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred c---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 1 24689999999999999999999999998876665555554
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00081 Score=74.15 Aligned_cols=105 Identities=7% Similarity=-0.057 Sum_probs=75.9
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE-
Q 004683 392 VRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH- 465 (737)
Q Consensus 392 ~~v~fspdg~~L~s~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~- 465 (737)
+-.+|+|..++++.++. .|.|.||- ++|++-.... -.-.+++++|+ .+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa----------------------dtGEPqr~Vt---~P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA----------------------DTGEPQRDVT---YPVHATSLCWHPEEFV 73 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe----------------------cCCCCCcccc---cceehhhhccChHHHH
Confidence 45678899998888875 36666653 2232211100 12234568999 544
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~ 521 (737)
|+.|- -|.+.+|...+.+.-.....|..+|..+.||++| .++++..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55555 6999999998777766667999999999999999 99999999999999765
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.019 Score=57.11 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=111.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc
Q 004683 451 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~ 524 (737)
+-...++.++|. .+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++..++ ++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 455669999999 56566555 588888886 48888887632 4567788998888 66665568899999883321
Q ss_pred ------EEEEEc-----CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC---Cceeeceeeeecc--cCCCCCCCCeE
Q 004683 525 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 588 (737)
Q Consensus 525 ------~~~~l~-----~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~---~~~~~~~~~~~~~--~~~~~~~~~v~ 588 (737)
....+. .+...+-.++|+|.++.++++-...-..+|.++. ...........+. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 112221 2345688999999988888887776677776653 1111101111111 1111 4678
Q ss_pred EEEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 589 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 589 ~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
+++++|....+++ | .+..|..+| .+|+++..+.... | -...-.++|.++|+ |+..++.+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999998766555 6 677899999 4788766554321 1 13477899999985 5555577777765
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.003 Score=68.38 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=109.8
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE---ECC-CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG---FDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg---s~d-g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
..+.+-|-+ |...+.+......+..-.|+|++ .++.. ... ..+.++|+.+++....+. ..+.-..-+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 345555554 55556665555567778899999 43322 222 369999999887655443 233344568999999
Q ss_pred EEEEEe-CCCc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecC--cEEEEeCCCCceeE
Q 004683 547 VLVSSG-ADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTS 619 (737)
Q Consensus 547 ~l~s~s-~dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg--~I~iwd~~~~~~~~ 619 (737)
.++.+. .||. |.++|+.+.. +..+..+. +.-..-.|+|+|++++. + ..| .|.++|.+.+.. .
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ 319 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN------LPRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-T 319 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc------ceecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-e
Confidence 877554 4554 6677887743 22122222 23337789999999986 3 334 577888866654 3
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEec-CCe--EEEEEcCCCeeEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLELRCQ 664 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~-dg~--I~vwd~~~~~~~~~ 664 (737)
.+... .+.-..-.|||||++++..+. +|. |.+.|+.++.....
T Consensus 320 riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 320 RLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred Eeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 33322 222227789999999987664 344 66777766654333
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0022 Score=69.33 Aligned_cols=178 Identities=19% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCCeEEEEEe--CCEEEEEe---C--CeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC--eEEEEECCC--eEEEEe
Q 004683 453 KDSISCFALR--GSHLFSAS---G--GKISIFSLETFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDS--SILVHC 519 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s---d--g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~--~l~sgs~dg--~I~vwd 519 (737)
...+..-+|+ +..++... . ..+.++++.+++...... ++.. .-+|+||| .+++...|| .|+++|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEc
Confidence 3445556677 55444333 2 359999999887655543 4333 55899999 555666677 577778
Q ss_pred cCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC-C--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC
Q 004683 520 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 520 ~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d-g--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g 596 (737)
+.+++..+ +....+.-..-.|+|||+.++-.+.. | .|.++|...... ..+ ...+ ..-....|+|+|
T Consensus 269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~ri--T~~~-----~~~~~p~~SpdG 337 (425)
T COG0823 269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRL--TFSG-----GGNSNPVWSPDG 337 (425)
T ss_pred CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEe--eccC-----CCCcCccCCCCC
Confidence 88776333 54333333466899999998877653 3 366667776332 111 1112 122278899999
Q ss_pred CEEEE-E-ecCc--EEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec
Q 004683 597 IHLLS-I-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 597 ~~l~~-~-~dg~--I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
++++. + .+|. |.+.|+.++...+.+.. .......+|.|+|+.+...+.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEecc
Confidence 99997 4 3455 77777776664444432 344456788899988775443
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.016 Score=59.70 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=112.1
Q ss_pred CCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecC-----CCCCeEEEEEcCCCeEEEEECC------------C
Q 004683 453 KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------S 513 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~l~sgs~d------------g 513 (737)
.+.+.++..- +..|+++. .-+.+++.+++..+..+.. .....+...+.|+|.+..++.. |
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 3344444444 55555554 3345556565655333321 1234567788899933333333 2
Q ss_pred eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC-CcEEEEeCCC--CceeeceeeeecccCCCCCCCCeEEE
Q 004683 514 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 514 ~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d-g~I~lwdl~~--~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
.|+.+|. .+..+..+..+-..-+.++||||++.+..+... +.|.-|++.. +......... ...... +..-.+
T Consensus 144 ~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~---G~PDG~ 218 (307)
T COG3386 144 SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEP---GLPDGM 218 (307)
T ss_pred eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCC---CCCCce
Confidence 4555554 566677676666667899999999887776654 7788887762 2111111111 111111 456678
Q ss_pred EEecCCCEEEEE-ec-CcEEEEeCCCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 004683 591 QFHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 647 (737)
Q Consensus 591 ~~sp~g~~l~~~-~d-g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~ 647 (737)
+...+|.+.+++ .+ +.|.+|+.. |+.+..+..+ ...+++++|. |+.+.|++.+.
T Consensus 219 ~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 219 AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEec
Confidence 888899887654 33 389999997 9998888763 3678888885 66666665543
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.029 Score=55.84 Aligned_cols=204 Identities=12% Similarity=0.045 Sum_probs=106.1
Q ss_pred ecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 381 LLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 381 ~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
.+++ -...+..++|+|+...|++... .+.|...+. +|+++...... ..+..-.|
T Consensus 16 ~l~g--~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~----------------------~G~vlr~i~l~-g~~D~EgI 70 (248)
T PF06977_consen 16 PLPG--ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL----------------------DGKVLRRIPLD-GFGDYEGI 70 (248)
T ss_dssp E-TT----S-EEEEEEETTTTEEEEEETTTTEEEEEET----------------------T--EEEEEE-S-S-SSEEEE
T ss_pred ECCC--ccCCccccEEcCCCCeEEEEECCCCEEEEEcC----------------------CCCEEEEEeCC-CCCCceeE
Confidence 3665 4567999999998776666665 455543332 23333333322 24567789
Q ss_pred EEe-CCEEEEEe--CCeEEEEECCCC------cEEEEec-----CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC--
Q 004683 460 ALR-GSHLFSAS--GGKISIFSLETF------QTLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-- 522 (737)
Q Consensus 460 ~~s-~~~l~s~s--dg~i~vwd~~~~------~~~~~~~-----~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~-- 522 (737)
++. ++.++... ++.+.++++... .....+. .++..+-.++|.|.+ .|+++-...-..+|.+..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 999 56666666 789999888331 1122222 244568999999988 666677666666666543
Q ss_pred -CcEEEE--E------cCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 523 -KKTKAK--L------KGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 523 -~~~~~~--l------~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
...+.. . ......+.+++++|.. .+++.......|..+|.. |+......+..-..+-.......-.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEE
Confidence 222111 1 1133457899999954 556666677888889944 4443333332111110000135778999
Q ss_pred ecCCCEEEEEecCcEEEE
Q 004683 593 HPDQIHLLSIHEGQIDVY 610 (737)
Q Consensus 593 sp~g~~l~~~~dg~I~iw 610 (737)
.++|+..+++.-+..++|
T Consensus 230 d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp -TT--EEEEETTTEEEEE
T ss_pred CCCCCEEEEcCCceEEEe
Confidence 999988888876666655
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.014 Score=57.24 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=129.6
Q ss_pred eEEEEECCCCcEEEEecCCCCC--eEEEEEcCCC-eEEEEECC-----CeEEEEecCCC-cEEEEEcCCCcceEEEEEeC
Q 004683 473 KISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK-KTKAKLKGHQNRITCLAYSL 543 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~--v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp 543 (737)
...++|..+.+...++...++. .-.=.||||| +|++.-.| |.|-+||.+.+ +.+..+..|.-....+.|.+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 4567888776655554322221 1123689999 77665443 58999998754 45667788888888999999
Q ss_pred CCCEEEEEeC------------------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec
Q 004683 544 SLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 604 (737)
Q Consensus 544 ~g~~l~s~s~------------------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d 604 (737)
||+.++.+.. .-++.+.|..+++.+.+..+.. ...+ ..|..++..+||..++.+ ..
T Consensus 172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l~~----lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SLRQ----LSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hhhh----cceeeeeeCCCCcEEEEEEee
Confidence 9999887642 1134445545544433322220 0111 578889999999887765 22
Q ss_pred Cc-----EEEEeCCCCceeEEecCCC-----CCCCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCeeEEEEecccccCC
Q 004683 605 GQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 605 g~-----I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
|. -.+=....++++.-+.... ....|-+++.+.+..+++..+- .+...+||..+|..+..-...
T Consensus 247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----- 321 (366)
T COG3490 247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----- 321 (366)
T ss_pred CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----
Confidence 21 1122223344443332211 1456778888876666665554 456789999999987654321
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+ +..++- ...-++..+.+|.+.++.-.
T Consensus 322 ---d----aaGva~---~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 322 ---D----AAGVAA---AKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ---c----ccccee---ccCceEEecCCceEEecccc
Confidence 1 113332 23346666678888887543
No 355
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.67 E-value=5.1e-05 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhcccc
Q 004683 141 TKEELIYLIHQFLNEEEFKETLHKLEQETRVF 172 (737)
Q Consensus 141 ~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~ 172 (737)
.+.++.++|+|||...||..|+.+|++|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46889999999999999999999999999873
No 356
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.64 E-value=0.00015 Score=69.08 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc---------HHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHH
Q 004683 140 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---------INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMF 210 (737)
Q Consensus 140 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~---------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~ 210 (737)
.+++++++||+.||-..||.++|..+..|+|+..+ -...+.+|..|+-++|...+.++.+ .--.-....|
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHH
Confidence 57899999999999999999999999999999882 5678899999999999999988722 1001122345
Q ss_pred HHHHHHHHHHHHhhc
Q 004683 211 SQIQRQKYLEAVDRQ 225 (737)
Q Consensus 211 ~~l~~q~~lEll~~~ 225 (737)
..+++|+++|++..+
T Consensus 103 F~Lq~q~lIEliR~~ 117 (228)
T KOG2659|consen 103 FHLQQLHLIELIREG 117 (228)
T ss_pred HHHHHHHHHHHHHhh
Confidence 569999999999875
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00081 Score=73.22 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=102.8
Q ss_pred CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE-EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 493 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~-~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
..|.--+++..+ +++.|+.-|.+++|+-.++.... ...+..+.+..+..+++..++|.|+..|.|.++-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344444556667 99999999999999977765433 2223445666778899999999999999999998876332222
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCc----eeEEecCCCCCCCeEEEEEccCCCEEEEE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVS 645 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~l~sg 645 (737)
..+......|. ..|++++|++++..+++| ..|+|..-.+.+.. ..+.+.. ..+.|..+... ++.+|++.
T Consensus 114 ~~~t~~d~~~~---~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~--~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 114 DYVTPCDKSHK---CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS--EDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred eeeccccccCC---ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec--cCcceEEeecc-cceehHhh
Confidence 22222223344 789999999999999998 67898888776621 1112211 25667777653 34444444
Q ss_pred ecCCeEEEEEcCCC
Q 004683 646 CKSGHVKVFDTSTL 659 (737)
Q Consensus 646 s~dg~I~vwd~~~~ 659 (737)
..- -.+++.+.+
T Consensus 188 l~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 188 LTR--CILCQTEAE 199 (726)
T ss_pred hhh--hheeecchh
Confidence 432 234454433
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.071 Score=57.90 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=90.5
Q ss_pred CCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEe-------cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC
Q 004683 454 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 454 ~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~ 523 (737)
+.+.++.|+ ...|++-. ||.++++|+. |+....+ .-....+....+..+| .+++ .++.+.+..-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence 788999999 55555555 9999999986 4441111 1111222233444466 4444 3455554432221
Q ss_pred c-EEEEEc---C-----CCc-ceEE-EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 524 K-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 524 ~-~~~~l~---~-----~~~-~v~~-l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
. ....+. + +.. .... ..++.+....+....++.+.+.+-... ..+.. . +++..+++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i~~-~----~~i~~iav 224 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--------KQIDS-D----GPIIKIAV 224 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--------ccccC-C----CCeEEEEE
Confidence 1 111111 0 000 0000 224444555555555556654443321 10111 1 57999999
Q ss_pred ecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 593 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 593 sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
||+|+++|. ..+|.+.+.+..-.+....+... .......+.|.-+
T Consensus 225 Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 225 SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN 270 (410)
T ss_pred CCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence 999999998 67899999987666666666543 1345567777644
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.17 Score=54.45 Aligned_cols=200 Identities=16% Similarity=0.106 Sum_probs=137.0
Q ss_pred CeEEEEEcCCC-e-EEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCcee
Q 004683 494 IATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKL 568 (737)
Q Consensus 494 ~v~~~~~s~~~-~-l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~---dg~I~lwdl~~~~~~ 568 (737)
.-..+++++.+ . .++...++.|.+.|..+.+.......- .....++++|+++.+..+.. ++++.+.|..+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 34577888888 4 444445689999998877766655432 25678999999988777666 6788888888743
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCceeEEecC---CCCCCCeEEEEEccCCCEEE
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~ 643 (737)
.+...+.+. .+ ..++++|+|..+++. .++.|.+.|........ -.. -........+.++|+|..++
T Consensus 152 ---~~~~~~vG~----~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 152 ---VTATIPVGN----TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred ---EEEEEecCC----Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEE
Confidence 333334442 23 789999999988774 68999999987665543 110 01134456789999999777
Q ss_pred EEecC---CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE-CCCcEEEEecCCCcee
Q 004683 644 VSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVE 715 (737)
Q Consensus 644 sgs~d---g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~iWd~~~~~~~ 715 (737)
+.... +.+...|..++......... ... ....+..+| ++..+.+.. ..+.|.+-|..+....
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCcee
Confidence 65544 59999999998876652211 121 234688899 777777664 4478888888776543
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.56 E-value=0.013 Score=66.11 Aligned_cols=213 Identities=13% Similarity=0.079 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCC-eEEEEE------CCC--eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCc-EEEEeC
Q 004683 493 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDA 562 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs------~dg--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~-I~lwdl 562 (737)
..+.+.+++|+| .++... .|. .|.+++.. +.......+. ....-.|+|+|+.+++.+.... +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 467788999999 655443 233 56666653 3333333332 3778899999988887754322 222222
Q ss_pred CCCceeeceeee--ecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEE---EeCCCCce-e---EEecCCCCCCCeEEE
Q 004683 563 VGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPDKMDLPITYA 633 (737)
Q Consensus 563 ~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~i---wd~~~~~~-~---~~~~~~~h~~~v~~~ 633 (737)
..........+. ....... ..|..+.|||||..++...+++|++ -....|.. + ..+.. .-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhhccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-ccCCccccc
Confidence 111000000000 0000111 5799999999999999865688877 44444531 1 11211 113346889
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 634 TYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 634 ~~sp~~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.|..++.++ ++..++...+|.+.- |.....+.. + +-...+.+++-++ + -+...+.+|.+.+=.-.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~------~--n~~~~v~~vaa~~-~--~iyv~~~~g~~~l~~~~~~ 570 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS------R--NLSAPVVAVAASP-S--TVYVTDARAVLQLPNSDSG 570 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCC------C--CccCceEEEecCC-c--eEEEEcCCceEEecCCCCC
Confidence 999999855 555555455555442 222111111 1 1111233677666 2 3445566664444333344
Q ss_pred ceeeeecCCCCC
Q 004683 713 EVEWGKLPFTDS 724 (737)
Q Consensus 713 ~~~w~~~~~~~~ 724 (737)
...|..-+.-..
T Consensus 571 ~~~W~ev~~l~g 582 (591)
T PRK13616 571 DQYWREVPGLMG 582 (591)
T ss_pred CCCceECccccC
Confidence 567887554433
No 361
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=97.56 E-value=5.9e-05 Score=69.24 Aligned_cols=120 Identities=26% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCchhhHhhhhhcccc-cCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccc
Q 004683 1 MNGEWEKAEKYLSAFTK-LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 79 (737)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (737)
++||+++|.+.++.-.+ +.... ..+.|.+++|+|+|.+.+++..+|++..|+.|+++.....+.++++..+|.-.+.
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~--~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~lL~~~~~ 90 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRN--SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSLLAYPDP 90 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcC--CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 47999999999998776 43332 3788999999999999999999999999999976664344555666666655444
Q ss_pred cc--cccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHH
Q 004683 80 RE--NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIK 131 (737)
Q Consensus 80 ~~--~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (737)
.+ ...+..+-+ ...|..+.+++.+.+=..--+ | +.+.|..+++
T Consensus 91 ~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~~------~--~~s~L~~~~~ 135 (145)
T PF10607_consen 91 EEPLPSPYKELLS-PERREELAEEFNSAILKSYGL------P--KESPLEVILK 135 (145)
T ss_pred ccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhCc------C--CCCHHHHHHH
Confidence 43 223333333 377888888888855433222 2 3455666666
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.52 E-value=0.17 Score=53.02 Aligned_cols=254 Identities=14% Similarity=0.139 Sum_probs=121.1
Q ss_pred eecCCCeeeeeccCCCCCCCeEEE-----EEe--CCEEEEEe--C--CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC
Q 004683 436 YQPSSKLVMTNDIAADPKDSISCF-----ALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD 504 (737)
Q Consensus 436 ~~~~~~~~~~~~~~~~h~~~V~~v-----~~s--~~~l~s~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 504 (737)
-|+.||.-+..+.. .......+ +|. |+.|+.++ + ..+.+.|+.+++..+--.+.........++|++
T Consensus 15 ~D~~TG~~VtrLT~--~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 15 IDPDTGHRVTRLTP--PDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp E-TTT--EEEE-S---TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS
T ss_pred eCCCCCceEEEecC--CCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC
Confidence 47778776665542 11112222 344 66666555 4 468888999888776655432222245667888
Q ss_pred -eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEE--eCCCCEEEEEeC----------------------CCcEEE
Q 004683 505 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--SLSLNVLVSSGA----------------------DAQLCV 559 (737)
Q Consensus 505 -~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~--sp~g~~l~s~s~----------------------dg~I~l 559 (737)
.++-...+..|+-.|+++.+....+......+-...| +.++..++-.-. ...|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 6655556678999999998776666555555554555 445666543211 123445
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecC-----cEEEEeCCC-CceeEEecCCCCCCCeEE
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDVYEAPT-LNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg-----~I~iwd~~~-~~~~~~~~~~~h~~~v~~ 632 (737)
.|+.+++. +.+ .... ..+..+.|+|....+++ |.+| .-+||-+++ +.....+..+.....+..
T Consensus 173 idl~tG~~---~~v---~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 173 IDLKTGER---KVV---FEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp EETTT--E---EEE---EEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred EECCCCce---eEE---EecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 56666442 111 1111 57889999998877766 7544 124554432 333333332222344555
Q ss_pred EEEccCCCEEEEEe-----cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC-----
Q 004683 633 ATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG----- 702 (737)
Q Consensus 633 ~~~sp~~~~l~sgs-----~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg----- 702 (737)
=-|+|||..|.--+ .+..|.-+|..+++....... . .+...--++ |+.++|.=+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---------p---~~~H~~ss~-Dg~L~vGDG~d~p~~v~ 309 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---------P---WCSHFMSSP-DGKLFVGDGGDAPVDVA 309 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------------SEEEEEE-T-TSSEEEEEE--------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---------C---ceeeeEEcC-CCCEEEecCCCCCcccc
Confidence 67899998776422 244677788888875443221 1 122455567 777776544442
Q ss_pred -----------cEEEEecCCCce
Q 004683 703 -----------RVHVIEPLESEV 714 (737)
Q Consensus 703 -----------~V~iWd~~~~~~ 714 (737)
-|+++++..++.
T Consensus 310 ~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 310 DAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp -----------EEEEEETTTTEE
T ss_pred ccccceecCCcEEEEeccccCce
Confidence 456677776653
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.047 Score=58.82 Aligned_cols=203 Identities=17% Similarity=0.128 Sum_probs=139.8
Q ss_pred EEEEEe--CCEE-EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCCcEEEE
Q 004683 457 SCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK 528 (737)
Q Consensus 457 ~~v~~s--~~~l-~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~~~~~~ 528 (737)
..++.+ +..+ ++.. ++.|.+.|..+.+......... ....++++|++ .+.++.. ++.+.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 355665 5544 4444 6999999988777766664222 45588999999 5555544 68999999998888777
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE- 604 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d- 604 (737)
...-..+ ..++++|+|+.++... .++.|.+.|..+..............+ .....+.++|+|..+.+. .+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence 5433344 8899999999766555 788999999776332210000001112 345689999999977763 22
Q ss_pred -CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCeeEEEEec
Q 004683 605 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 605 -g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~ 667 (737)
+.+...|..++.....-...... ....+..+|+|+++++... .+.+.+-|..+.........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 68999999888776652221112 5667899999999988744 48999999998887776543
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.49 E-value=0.025 Score=59.59 Aligned_cols=173 Identities=18% Similarity=0.158 Sum_probs=101.8
Q ss_pred CeEEEEECCCCcEEEEecC-CCCCeEEEE---EcCC----C-eEEEEEC----------CCeEEEEecCCC----cEEEE
Q 004683 472 GKISIFSLETFQTLATFAN-PPPIATYFI---LLPQ----D-LFAFGFD----------DSSILVHCPCTK----KTKAK 528 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~---~s~~----~-~l~sgs~----------dg~I~vwd~~~~----~~~~~ 528 (737)
+.|++.|..+.+.+..+.- ....+.+++ +..+ . ++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688889888887777652 233444443 3332 4 7776653 288999999884 12222
Q ss_pred E--cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec
Q 004683 529 L--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 604 (737)
Q Consensus 529 l--~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d 604 (737)
+ ....++|++++-- ++ .++++. ++.|.+|++...+ ....... ... ..+.++... ++++++| ..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~----~~~----~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY----DSP----FYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-----BS----SSEEEEEEE--TTEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee----cce----EEEEEEecc--ccEEEEEEcc
Confidence 2 2246888888766 44 444443 5899999998854 2111111 111 345555555 5577776 55
Q ss_pred CcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 605 GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 605 g~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
..+.++..+. ...+..+........++++.|-++++.++++..+|.+.++...
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666664332 2222222222235668889888777899999999999999876
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.18 Score=51.72 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=136.1
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
..++.++.|..+| +.+++... +...... . +...|..+...|+-+.|++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~---~~~~~~i-~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD---PSKPTRI-L----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC---CccceeE-e----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4688899998888 88888832 2333332 1 345599999999888777776 49999999875333000000
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEE---Ee--CCEEEEEeCCeEEEEECCCC-----cEEEEecCCCCCeEEE
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIATYF 498 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~---~s--~~~l~s~sdg~i~vwd~~~~-----~~~~~~~~~~~~v~~~ 498 (737)
. ...+....... . .....+..++ -. +..++++....|.+|..... +..+.+.- ...+.++
T Consensus 75 ~------~~~~~~~~~~~-~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 75 L------AFPKSRSLPTK-L--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred c------ccccccccccc-c--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 0 00000000000 0 1334455555 11 44566666778888877542 34455543 3577889
Q ss_pred EEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCC------------cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 004683 499 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ------------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 499 ~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~------------~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~ 566 (737)
+|.++ .++.|.. ....+.|+.++.....+.... .++..+.. +++.+|++- |..-.+.|..+ +
T Consensus 145 ~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~ 218 (275)
T PF00780_consen 145 AFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-E 218 (275)
T ss_pred EEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-C
Confidence 99843 5666664 458888998776654442111 12333333 345555542 33334445543 2
Q ss_pred eeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC
Q 004683 567 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~ 623 (737)
......+. + . ..+.++++. ..++++-.++.|.||++.+++.++++..
T Consensus 219 ~~r~~~i~-W--~-----~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 219 PSRKSTIQ-W--S-----SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cCcccEEE-c--C-----CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 22212222 1 1 345566664 3578876667799999999999998854
No 366
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.43 E-value=0.36 Score=55.46 Aligned_cols=315 Identities=11% Similarity=0.029 Sum_probs=164.7
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeee
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 432 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~ 432 (737)
.++.|..+..+.+--.... ........+++..-...|....|-.|+.+|.++..||.+.-+.++
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd--~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d-------------- 613 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPD--LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD-------------- 613 (1096)
T ss_pred EEEEEeecceEEEEEECCC--cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE--------------
Confidence 6788887777644433321 111111113332234566777777788999999999999877543
Q ss_pred eEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC---eE
Q 004683 433 SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF 506 (737)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~l 506 (737)
..+|.+.......-...++.--.|+ ++.+++++|.-..+|.-. ++.+.+--.-..--..+.|+.+. .+
T Consensus 614 -----~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 614 -----INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred -----cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceE
Confidence 3444332211101134555555566 667788888777777644 44332211111111122344333 45
Q ss_pred EEEECCCeEEEEecCCCc--EEEEEcCCCcceEEEEEeCCCCEEEEEeC-----------C---CcEEEEeCCCCceeec
Q 004683 507 AFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGA-----------D---AQLCVWDAVGWKKLCS 570 (737)
Q Consensus 507 ~sgs~dg~I~vwd~~~~~--~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-----------d---g~I~lwdl~~~~~~~~ 570 (737)
+++. .+.+++.-++.-+ .++++. -......+++.+....+.+.+. . ..++++|-++.+....
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~ 765 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS 765 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence 5544 4455555444322 233333 2334556666664444443332 1 1367778777444333
Q ss_pred eeeeecccCCCCCCCCeEEEEEecC-CCEEEEEe-----------cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
......... ..+.++.|..| +.++++|. .|.|.+|....+..+.......-.+.+.++.. -+
T Consensus 766 hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fn 839 (1096)
T KOG1897|consen 766 HEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FN 839 (1096)
T ss_pred cccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hC
Confidence 333211111 34556668887 66766641 36788988877444443322112444554442 36
Q ss_pred CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 639 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 639 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
|++||+- +..|++|+..+.+.+..-..+ ...+. .+...- .++.++.|.--+++.+-...
T Consensus 840 gkllA~I--n~~vrLye~t~~~eLr~e~~~--------~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTTERELRIECNI--------SNPII--ALDLQV-KGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred CeEEEec--CcEEEEEEccccceehhhhcc--------cCCeE--EEEEEe-cCcEEEEeeccceEEEEEEe
Confidence 7777654 478999999988555443211 22233 343333 57788888877776664443
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.14 Score=52.52 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=123.3
Q ss_pred CCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE----------
Q 004683 463 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 529 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l---------- 529 (737)
++.|+.|. +| +.+++... ....+.... ..|..+...++- .+++-+ |+.+.++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77888888 56 99999833 333333322 238899988877 444443 599999998754333210
Q ss_pred ----cCCCcceEEEE--EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe
Q 004683 530 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 603 (737)
Q Consensus 530 ----~~~~~~v~~l~--~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~ 603 (737)
......+..++ -...+...++....+.|.+|.............+.+.-. ..+.+++|. ++.++++.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01223344444 123444444455566888887765211000122222222 578899998 56777777
Q ss_pred cCcEEEEeCCCCceeEEecCCCC----------CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEE--EEeccccc
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA 671 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h----------~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~~~~ 671 (737)
.+...+.|+.++.....+..... ..++..+.. +++.+|++. |..-.+.|. .|+... .+...
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~--- 228 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS--- 228 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcC---
Confidence 77899999987766444322111 122333333 445666643 333333343 343332 22211
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
. .+.++++.. .+|++.+. +.|.||++.+++..-
T Consensus 229 -----~---~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 229 -----S---APQSVAYSS---PYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred -----C---chhEEEEEC---CEEEEECC-CEEEEEECcCCcEEE
Confidence 1 233566644 46666655 459999999997543
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.40 E-value=0.18 Score=55.18 Aligned_cols=242 Identities=11% Similarity=0.054 Sum_probs=122.5
Q ss_pred CeEEEEEecCCCEEEEEE-CCC----cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 390 RVVRLIYSHSGDFLVALT-QTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 390 ~V~~v~fspdg~~L~s~s-~dg----~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
.+...++||||+++|.+- ..| ++++.| +.+|+.+...+ .......+.|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~D---------------------l~tg~~l~d~i---~~~~~~~~~W~~d 180 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFD---------------------LETGKFLPDGI---ENPKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEE---------------------TTTTEEEEEEE---EEEESEEEEECTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEE---------------------CCCCcCcCCcc---cccccceEEEeCC
Confidence 344688999999988663 333 355544 44554443211 01111237888
Q ss_pred CCEEEEEe-CC-----------eEEEEECCCCcE--EEEecCCCCC--eEEEEEcCCC-eEEE-EECC---CeEEEEecC
Q 004683 463 GSHLFSAS-GG-----------KISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFAF-GFDD---SSILVHCPC 521 (737)
Q Consensus 463 ~~~l~s~s-dg-----------~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~s~~~-~l~s-gs~d---g~I~vwd~~ 521 (737)
++.|+... +. .|+.|.+.++.. ...+...... ...+..++|+ +++. .... ..+++.|+.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 55555444 32 378888877643 3455543333 5678889999 5443 3332 357888887
Q ss_pred CC----cEEEEEcCCCcceEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 522 TK----KTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 522 ~~----~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~---dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
.+ .....+......+....-+..+.+++.... .+.|.-.++..........+ +...... ..+..+. .
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~--l~~~~~~--~~l~~~~--~ 334 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV--LIPEDED--VSLEDVS--L 334 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE--EE--SSS--EEEEEEE--E
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE--EcCCCCc--eeEEEEE--E
Confidence 74 223333333333333222224444443322 35666677776432111111 1221110 1344444 4
Q ss_pred CCCEEEEE--ec--CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE--Eec--CCeEEEEEcCCCeeE
Q 004683 595 DQIHLLSI--HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCK--SGHVKVFDTSTLELR 662 (737)
Q Consensus 595 ~g~~l~~~--~d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s--gs~--dg~I~vwd~~~~~~~ 662 (737)
.+.+|+.. .+ ..|+++++..+.....+.... .+.|..+...++++.+.. .|. -++++.||+.+++..
T Consensus 335 ~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 335 FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 45566653 44 369999997455555554432 455666665666655442 222 378999999998754
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.31 E-value=0.063 Score=57.59 Aligned_cols=210 Identities=15% Similarity=0.130 Sum_probs=114.9
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecCCCc-------------------------------------------EEEEE
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL 529 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~-------------------------------------------~~~~l 529 (737)
.|+.+.|.++. -+++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888999888 89999999988887543211 11122
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee--cccCCCCCCCCeEEEEEec-----CC---CEE
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHP-----DQ---IHL 599 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~sp-----~g---~~l 599 (737)
....++|++++.+.-| +++.|..+|.+.|.|++....+....+.. ...... ..++++.|+. |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~---~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS---SYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-------EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccc---cCeeEEEEEEEecCCCcccceEE
Confidence 3346789999987555 89999999999999999866555544442 111122 5688888872 22 334
Q ss_pred EEE-ecCcEEEEeCC--C-CceeEEecC--CCCCCCeEEEE-EccC-C-------------------CEEEEEecCCeEE
Q 004683 600 LSI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCD-G-------------------KCIYVSCKSGHVK 652 (737)
Q Consensus 600 ~~~-~dg~I~iwd~~--~-~~~~~~~~~--~~h~~~v~~~~-~sp~-~-------------------~~l~sgs~dg~I~ 652 (737)
++| ..|.+.+|.+- . +.-...+.. ..+.+.|..+. |+.+ | .-++....+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 455 66999998764 1 211111111 12355565554 4222 1 1234444577899
Q ss_pred EEEcCCCeeEEEEecccccCCCCccCceeeEEEEE-----ccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 653 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-----HPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 653 vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~-----sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
|+...+.+..++... ...-+..+.+ .. .+..|++-..+|.|+++.+..-++.-..
T Consensus 239 v~~~~~~k~~~K~~~----------~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD----------DPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp EE-TT---EEEEE-S----------S-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred EEeCCCCcccceeec----------cccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCchHhhcc
Confidence 999998877665431 1122223333 22 4568999999999999999887655443
No 370
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.30 E-value=0.094 Score=52.02 Aligned_cols=191 Identities=12% Similarity=-0.012 Sum_probs=114.0
Q ss_pred CeEEEEEcCCC-eEEEEECCC--eEEEEecCCCcEEEEEcCC-CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004683 494 IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 569 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg--~I~vwd~~~~~~~~~l~~~-~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~ 569 (737)
-...+.|..+| .+-+.+.-| .|+.+|+.+|+......-. ...--.++... ++.....-.++...+||..+.+...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 34577787788 666666666 7999999999877654321 22223344442 3344445568899999999854433
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCC---CCeEEEEEccCCCEEEEE
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS 645 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~sg 645 (737)
..... +.=+.++ .+|+.|+.| ....++.+|..+.+...++...... ..++-+.|- +|...|=.
T Consensus 125 ~~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 125 TFPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp EEE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred EEecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 32221 2334555 567677765 6789999999888877766543222 345556664 66655555
Q ss_pred ecCCeEEEEEcCCCeeEEEEecccccCC----CCc-cCceeeEEEEEccCCCCEEEEE
Q 004683 646 CKSGHVKVFDTSTLELRCQINLTAYAQP----GTI-SLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 646 s~dg~I~vwd~~~~~~~~~~~~~~~~~~----g~~-~~~v~~~~v~~sp~d~~~las~ 698 (737)
-....|...|..+|+....+......+. ... ...--...+||.|..+.+++||
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5677889999999999998875543321 100 0011135999999666677776
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.0058 Score=69.99 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=94.8
Q ss_pred CCeEEEEECCCCcEEEEecCCCCC-eEEEEEcC-----CC-eEEEEECCCeEEEEecCCCc--EEEE-Ec--CCCcceEE
Q 004683 471 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC 538 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~-----~~-~l~sgs~dg~I~vwd~~~~~--~~~~-l~--~~~~~v~~ 538 (737)
...|+-.|+++|+.+..+..+... |..++-.. +. ..+.|-.+..+..||.+-.. ++.. .+ ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999977654 55443321 13 56778889999999988532 2211 11 13445678
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 612 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~ 612 (737)
++-+.+| +||+|+.+|.||+||--+ ....+...+-. .+|..|..+.||+|+++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g------~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLG------KRAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccc------hhhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8777777 799999999999999433 11222222333 7999999999999999988888888885
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.27 E-value=0.04 Score=58.02 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=107.3
Q ss_pred CeEEEEecCCCcEEEEEcC-CCcceEEEE---EeCC----CCEEEEEeC----------CCcEEEEeCCCC-c-eeecee
Q 004683 513 SSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGW-K-KLCSKF 572 (737)
Q Consensus 513 g~I~vwd~~~~~~~~~l~~-~~~~v~~l~---~sp~----g~~l~s~s~----------dg~I~lwdl~~~-~-~~~~~~ 572 (737)
..|++.|..+.+.+..+.- ....+.++. +..+ ..++++|+. .|.|.++++... . ...-+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688888888777655532 123344433 3322 456777653 288999999873 0 001111
Q ss_pred eeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc-eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
+..... . ++|++++-- +..++++..+.|.+|++...+ ....-..+ ....++++... ++++++|.....+
T Consensus 82 i~~~~~--~---g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEV--K---GPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEE--S---S-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEee--c---CcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCE
Confidence 111111 1 678888776 344888888999999998777 44332221 13355555544 6699999888888
Q ss_pred EEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 652 KVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 652 ~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
.++.... +.....+... ....+++++.+-+ +++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d--------~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARD--------YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEE--------SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEec--------CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence 8875543 2323333211 2345677888887 45799999999999999886
No 373
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.21 E-value=0.00046 Score=51.91 Aligned_cols=53 Identities=30% Similarity=0.480 Sum_probs=40.7
Q ss_pred cHHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHhhccc
Q 004683 174 DINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQK 227 (737)
Q Consensus 174 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~ 227 (737)
+...++++|++|+|+.|++.+...........+...|. |++|+|+|+++.+..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~-L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhH-HHHHHHHHHHHcCCc
Confidence 46789999999999999999987744333333455566 999999999986543
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.2 Score=51.84 Aligned_cols=181 Identities=18% Similarity=0.106 Sum_probs=103.9
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-----CCcceEEEEEeCC
Q 004683 471 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLS 544 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-----~~~~v~~l~~sp~ 544 (737)
.+.|.-|+..+++. ..+..+. .+.++.....+ .|+++. ..+.+++.+++..+..+.. .....+.+...|+
T Consensus 46 ~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 46 GGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 57788888775543 2232222 23344443344 555554 3456666666655333321 1245678888999
Q ss_pred CCEEEEEeC-----------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEe
Q 004683 545 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 611 (737)
Q Consensus 545 g~~l~s~s~-----------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd 611 (737)
|.+.++... -|.|+.+|... .... +...+- ...+.++||||++.++.+ ..+.|+-|+
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g------~~~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDG------GVVR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCC------CEEE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 987665433 13344444322 1111 222211 345689999999888875 558888888
Q ss_pred CCC--Cc----eeEEecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEEcCCCeeEEEEec
Q 004683 612 APT--LN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINL 667 (737)
Q Consensus 612 ~~~--~~----~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg-~I~vwd~~~~~~~~~~~~ 667 (737)
+.. +. ....... ...+..-.++...+|.+-+++..+| .|.+|+.. |+++..+..
T Consensus 192 ~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 192 LDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred cCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 752 21 1111111 1245566788888888876555554 89999998 888888764
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.043 Score=58.32 Aligned_cols=140 Identities=14% Similarity=0.236 Sum_probs=98.5
Q ss_pred CCEEE-EEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC---e-----EEEEECCCeEEEEecCCCc--EEEEEc
Q 004683 463 GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---L-----FAFGFDDSSILVHCPCTKK--TKAKLK 530 (737)
Q Consensus 463 ~~~l~-s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~-----l~sgs~dg~I~vwd~~~~~--~~~~l~ 530 (737)
.++++ ++. ...++-.|+++|+.+..+.-+.. |.-+.+.|+. . -+.|-.|..|.-||++-.. .+...+
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 34444 444 57899999999999999987766 7777888875 2 3456678899999987422 222233
Q ss_pred CC----CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCc
Q 004683 531 GH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ 606 (737)
Q Consensus 531 ~~----~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~ 606 (737)
+| .....|.+-..+| ++++||.+|.||+||--. ....+...+-. .+|..|..+.+|+++++..+..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~------~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG------RRAKTALPGLG---DAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhh------hhhhhcccccC---CceeeEEeeccCcEEEEecccE
Confidence 33 2345566666666 899999999999999733 22222233333 6899999999999999988888
Q ss_pred EEEEeCC
Q 004683 607 IDVYEAP 613 (737)
Q Consensus 607 I~iwd~~ 613 (737)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8887753
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.04 E-value=0.029 Score=64.40 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=94.5
Q ss_pred EEECCCeEEEEecCCCcEEEEEcCCCcc-eEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCc-eeeceeeeecccCC
Q 004683 508 FGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSL-----SLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGL 580 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~~~~l~~~~~~-v~~l~~sp-----~g~~l~s~s~dg~I~lwdl~~~~-~~~~~~~~~~~~~~ 580 (737)
.......|+-.|++.|+.+..+..|... |..++-.. +....+.|-.++.+..||.+-.. ..-..........
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~- 577 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK- 577 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC-
Confidence 3345678999999999999999887644 55443221 12345677788999999998632 1100011111111
Q ss_pred CCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 581 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
....|++-+.+|...+++.+|.||+||- .|..-.+..+ +-+.+|.+++.+.||+||++.+. ..+.+++.
T Consensus 578 ----~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 578 ----NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ----CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 4677888888887666689999999995 3433333322 24789999999999999998874 55667664
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.99 E-value=0.59 Score=51.12 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=112.7
Q ss_pred EEEEcCCC-eEEEE-ECCC----eEEEEecCCCcEEEEE-cCCCcceEEEEEeCCCCEEEEEeCCC-----------cEE
Q 004683 497 YFILLPQD-LFAFG-FDDS----SILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADA-----------QLC 558 (737)
Q Consensus 497 ~~~~s~~~-~l~sg-s~dg----~I~vwd~~~~~~~~~l-~~~~~~v~~l~~sp~g~~l~s~s~dg-----------~I~ 558 (737)
.+.++|+| ++|.+ +..| .++++|+.+|+.+... .. .....+.|.++++.++....+. .|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 56789999 65543 4445 6999999999776532 21 1122399999998877766443 277
Q ss_pred EEeCCCCceeeceeeeecccCCCCCCCC-eEEEEEecCCCEEEE-E---ec-CcEEEEeCCCC----ceeEEecCCCCCC
Q 004683 559 VWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLS-I---HE-GQIDVYEAPTL----NHTSQLVPDKMDL 628 (737)
Q Consensus 559 lwdl~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~~-~---~d-g~I~iwd~~~~----~~~~~~~~~~h~~ 628 (737)
.|.+.+..... .. +...... .. ...+..++++++++. + .+ ..+++.|+..+ .....+... ..+
T Consensus 206 ~~~~gt~~~~d-~l---vfe~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~ 278 (414)
T PF02897_consen 206 RHKLGTPQSED-EL---VFEEPDE--PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDG 278 (414)
T ss_dssp EEETTS-GGG--EE---EEC-TTC--TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS
T ss_pred EEECCCChHhC-ee---EEeecCC--CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCc
Confidence 78877632211 11 2222221 22 668899999999886 3 33 46899999875 222333221 123
Q ss_pred CeEEEEEccCCCEEEEEec---CCeEEEEEcCCCee---EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 629 PITYATYSCDGKCIYVSCK---SGHVKVFDTSTLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~---dg~I~vwd~~~~~~---~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
....+... ++.+++.... ++.|.-.++.+... ...+..+ ...+.+..+... .+.++++...++
T Consensus 279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~--------~~~~~l~~~~~~--~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE--------DEDVSLEDVSLF--KDYLVLSYRENG 347 (414)
T ss_dssp -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----------SSSEEEEEEEEE--TTEEEEEEEETT
T ss_pred eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC--------CCceeEEEEEEE--CCEEEEEEEECC
Confidence 33333333 4444443332 36777778877652 2233221 222333355443 345666666665
Q ss_pred --cEEEEecCCCceeeeecCCCCCCC
Q 004683 703 --RVHVIEPLESEVEWGKLPFTDSRE 726 (737)
Q Consensus 703 --~V~iWd~~~~~~~w~~~~~~~~g~ 726 (737)
.|+++++..+......+.+ ..|.
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p-~~g~ 372 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLP-EAGS 372 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESS-SSSE
T ss_pred ccEEEEEECCCCcEEeeecCC-cceE
Confidence 6888998833333333333 3443
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.031 Score=47.29 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=63.9
Q ss_pred eEEEEEec---CC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004683 391 VVRLIYSH---SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 465 (737)
Q Consensus 391 V~~v~fsp---dg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 465 (737)
|.++++.. || +.|+.||.|..|++|+-.. .. ++ . .-.+.|.+++-. +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~-------~E---------i---~e~~~v~~L~~~~~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IV-------AE---------I---TETDKVTSLCSLGGGR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EE-------EE---------E---ecccceEEEEEcCCCE
Confidence 56666654 33 5799999999999997331 11 11 1 245678888877 777
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE---cCCC--eEEEEECCCeEEE
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSILV 517 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---s~~~--~l~sgs~dg~I~v 517 (737)
++.+- +|+|-+|+- ...+...+.... +.++++ ..|| .|++|-.+|.|-+
T Consensus 56 F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 56 FAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 88887 899999975 333344443333 444443 3455 7999999988743
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.02 Score=60.76 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE-------EEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~-------l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
.+.++.....++-.|++.|+.+..++-+.. |+-+.+.|+++. -+.|-.|..|.-||.+-.... .+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eee-ee
Confidence 556677777899999999999999987665 777888886542 345667889999999852211 111 11
Q ss_pred cCCCC-CCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 578 TGLVP-ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 578 ~~~~~-~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
.+|.- ....-.|.+-..+|..++.|.+|.|++||- .+..-.+..+ +-..+|..+..+.+|+||++.+. ..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 22210 003456777777776666689999999997 4443333333 24789999999999999987764 55656554
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.0027 Score=41.88 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 523 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 523 ~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
+++...+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.82 E-value=0.15 Score=59.47 Aligned_cols=232 Identities=9% Similarity=-0.021 Sum_probs=123.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCC--------eEEEEEc----------------CCC-eEEEEECCCeEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL 516 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~-~l~sgs~dg~I~ 516 (737)
++.++.++ ++.|.-.|..+|+.+.++...... ...+++. ..+ .++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66777777 899999999999998887532211 1112221 133 788899999999
Q ss_pred EEecCCCcEEEEEcCCCcceE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEeCCCCceeece
Q 004683 517 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~~~~v~-------------~l~~sp--~g~~l~s~s~----------dg~I~lwdl~~~~~~~~~ 571 (737)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 11110 111122 2345666643 688999999997654432
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC-cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg-~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
... ..... ..+ +.|.....+ .+. ...-+|.+.+....-. + ... ..+....+.....-..+
T Consensus 353 ~~g--~p~~~---~~~------~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-G--n~~----pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 353 DPG--NPDPT---APP------APGETYTRNTPNSWSVASYDEKLGLVYLPM-G--NQT----PDQWGGDRTPADEKYSS 414 (764)
T ss_pred ecC--CCCcc---cCC------CCCCEeccCCCCccCceEEcCCCCeEEEeC-C--Ccc----ccccCCccccCcccccc
Confidence 211 00000 000 122222111 111 2334444433321111 0 000 00100000000112246
Q ss_pred eEEEEEcCCCeeEEEEecccccCCCCccCcee-----eEEEEEccCCCC---EEEEEECCCcEEEEecCCCceeeeec
Q 004683 650 HVKVFDTSTLELRCQINLTAYAQPGTISLELY-----PLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 650 ~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~-----~~~v~~sp~d~~---~las~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
.|.-.|.+||+....+... ||+-..+ ..-+...-.+++ .++.++.+|.+.+.|..+++..|...
T Consensus 415 slvALD~~TGk~~W~~Q~~------~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTV------HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCceEEEeccc------CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 6888899999988877542 1111000 111112111342 79999999999999999999999863
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0066 Score=65.58 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 493 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~-~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
..+.-+.|+|.- .+|.+..+|.|.++.+. .+.+.++.-+...++ +++|.|||+.+++|-.||+|++.|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356788999999 99999999999999887 677788876777777 999999999999999999999999998654433
Q ss_pred eeeeecccCCCCCCCCeEEEEEec
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
.+. ... ..|.++.|+|
T Consensus 100 ~~~-----s~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLF-----SVE---TDISKGIWDR 115 (665)
T ss_pred ccc-----ccc---cchheeeccc
Confidence 211 111 5677888864
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=1.6 Score=50.40 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=142.8
Q ss_pred CCCCeEEEEEecCC------CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCC--CCCCCeEE
Q 004683 387 FGGRVVRLIYSHSG------DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISC 458 (737)
Q Consensus 387 h~~~V~~v~fspdg------~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~h~~~V~~ 458 (737)
....|.|+.++|-| ++++.|..+..+.+--... + ...+...... .-...|.-
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p-------------------d-~~~~~~~~l~~~~iPRSIl~ 588 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP-------------------D-LILITHEQLSGEIIPRSILL 588 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC-------------------C-cceeeeeccCCCccchheee
Confidence 35789999999853 2677777766655433221 1 1111100000 11223333
Q ss_pred EEEe--CCEEEEEe-CCeEEEE--ECCCCcEEEEe--cCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEE-E
Q 004683 459 FALR--GSHLFSAS-GGKISIF--SLETFQTLATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA-K 528 (737)
Q Consensus 459 v~~s--~~~l~s~s-dg~i~vw--d~~~~~~~~~~--~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~-~ 528 (737)
.++- ..+|.++. ||.+.-+ |..+|..-..- .-...++.--.|+..+ .++++ .|+-..+|.-+ ++.+. .
T Consensus 589 ~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n-~kLv~sp 666 (1096)
T KOG1897|consen 589 TTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSN-GKLVYSP 666 (1096)
T ss_pred EEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecC-CcEEEec
Confidence 3443 56777777 8987655 44555432221 1223355555666666 44444 45555555533 33322 1
Q ss_pred EcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Ee--
Q 004683 529 LKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-- 603 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~-- 603 (737)
+.- +.--.-+.|+.+ ...++++. .+.+++.-++.-. ...+++++.+ .....+++.+....+.+ +.
T Consensus 667 ls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iq---kl~irtvpl~-----~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 667 LSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQ---KLHIRTVPLG-----ESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred cch-HHhhhhcccccccCCceEEEec-CCceEEEEecchh---hcceeeecCC-----CChhheEecccceEEEEEeccc
Confidence 111 110111223221 23355444 5567777665421 2233334444 45777888875444444 21
Q ss_pred ---cC---------cEEEEeCCCCceeEEecCCC--CCCCeEEEEEccC-CCEEEEEec----------CCeEEEEEcCC
Q 004683 604 ---EG---------QIDVYEAPTLNHTSQLVPDK--MDLPITYATYSCD-GKCIYVSCK----------SGHVKVFDTST 658 (737)
Q Consensus 604 ---dg---------~I~iwd~~~~~~~~~~~~~~--h~~~v~~~~~sp~-~~~l~sgs~----------dg~I~vwd~~~ 658 (737)
.+ .++++|-++.+.+....... ....+.++.|..| +.++++|.. .|.|.|+.+..
T Consensus 737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 11 37788888777665443321 1234555568776 677777763 48888888877
Q ss_pred CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 659 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+..+.....+. . .+.++ ++.-- +|+++|.- ...|++|+..+++
T Consensus 817 ~~~L~~v~e~~--v----~Gav~--aL~~f--ngkllA~I--n~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 817 LNSLELVAETV--V----KGAVY--ALVEF--NGKLLAGI--NQSVRLYEWTTER 859 (1096)
T ss_pred CCceeeeeeee--e----cccee--ehhhh--CCeEEEec--CcEEEEEEccccc
Confidence 43333332110 0 22233 33221 46677654 5679999998874
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.70 E-value=0.12 Score=58.61 Aligned_cols=186 Identities=9% Similarity=0.007 Sum_probs=99.7
Q ss_pred CCeEEEEEe--CCEEEEEe-------CC--eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---------
Q 004683 454 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 512 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s-------dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d--------- 512 (737)
..+.+.+.+ |+.++... |+ .+.+++.. +.......+. ..+.-.|+|+| .+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 356677788 66655443 33 55555642 3332222332 37788999998 66665432
Q ss_pred ---CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEE---EeCCCCceeeceeeeecccCCCCCCCC
Q 004683 513 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 513 ---g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~l---wdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|.+ -....++.....+ ..+..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP-REVGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc-EEeecccC---Cc
Confidence 233333444333222 2346799999999999988766 577776 4434443111111 11222222 34
Q ss_pred eEEEEEecCCCEEEEEec--CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 587 VNHIQFHPDQIHLLSIHE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 587 v~~l~~sp~g~~l~~~~d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
+.++.|.+++..++...+ ..++..++. |.....+........+.+++=+++ -++.+..+|.+.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 688999999986654433 335444553 322222222222455666666653 4555556664433
No 385
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.69 E-value=0.087 Score=44.67 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=65.0
Q ss_pred eEEEEEe------CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEE
Q 004683 456 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 456 V~~v~~s------~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~ 528 (737)
|+++++. .+.|++|+ |..|++|+-. ..+..+... ..|++++-...+.++.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 5666665 25788888 9999999843 455555443 45667776666699999999999999853 23333
Q ss_pred EcCCCcceEEEEEeC-C--C-CEEEEEeCCCcEE
Q 004683 529 LKGHQNRITCLAYSL-S--L-NVLVSSGADAQLC 558 (737)
Q Consensus 529 l~~~~~~v~~l~~sp-~--g-~~l~s~s~dg~I~ 558 (737)
.+. +..+.++.+.. + | .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443 33466665533 3 3 3588888888764
No 386
>PHA02713 hypothetical protein; Provisional
Probab=96.63 E-value=0.14 Score=58.14 Aligned_cols=194 Identities=12% Similarity=0.021 Sum_probs=97.1
Q ss_pred CC-eEEEEECC------CeEEEEecCCCcEEEEEcCCC-cceEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceee
Q 004683 503 QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC 569 (737)
Q Consensus 503 ~~-~l~sgs~d------g~I~vwd~~~~~~~~~l~~~~-~~v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~~~~ 569 (737)
++ .+++|+.+ ..+..||..++.-. .+..-. ..-......-+|+..+.|+.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~- 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK- 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-
Confidence 55 66666643 35778898776432 121111 1111112233677778888764 4788998874322
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec-----------------------CcEEEEeCCCCceeEEecCCC
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPDK 625 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d-----------------------g~I~iwd~~~~~~~~~~~~~~ 625 (737)
.+..++.... ....++ -+|+..+.| .+ ..+..||..+.+-.. ..+-.
T Consensus 381 --~~~~mp~~r~----~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-v~~m~ 451 (557)
T PHA02713 381 --MLPDMPIALS----SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-LPNFW 451 (557)
T ss_pred --ECCCCCcccc----cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee-cCCCC
Confidence 2221222211 111122 245555544 32 247778887654321 11100
Q ss_pred CCCCeEEEEEccCCCEEEEEecC------CeEEEEEcCC-Ce--eEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 626 MDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 626 h~~~v~~~~~sp~~~~l~sgs~d------g~I~vwd~~~-~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
.......+..-+|+..+.|+.+ ..+..||..+ .+ .+..++.. . .. .+++.. ++.+.+
T Consensus 452 -~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--------r--~~-~~~~~~--~~~iyv 517 (557)
T PHA02713 452 -TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--------L--SA-LHTILH--DNTIMM 517 (557)
T ss_pred -cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--------c--cc-ceeEEE--CCEEEE
Confidence 1111111223456766777654 2467898886 33 22222211 0 11 122222 678999
Q ss_pred EEECCC--cEEEEecCCCceeeeecCCCC
Q 004683 697 LGLTNG--RVHVIEPLESEVEWGKLPFTD 723 (737)
Q Consensus 697 s~s~Dg--~V~iWd~~~~~~~w~~~~~~~ 723 (737)
+||.|| ++..||+.+. .|....++-
T Consensus 518 ~Gg~~~~~~~e~yd~~~~--~W~~~~~~~ 544 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTY--EWNHICHQH 544 (557)
T ss_pred EeeecceeehhhcCcccc--cccchhhhc
Confidence 999998 7888888776 488755443
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.46 Score=46.98 Aligned_cols=212 Identities=16% Similarity=0.067 Sum_probs=121.3
Q ss_pred EEEEEcCCC--eEEEEECCCe-EEEEecCCCcEEEEEcCCC--cceEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 004683 496 TYFILLPQD--LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 565 (737)
Q Consensus 496 ~~~~~s~~~--~l~sgs~dg~-I~vwd~~~~~~~~~l~~~~--~~v~~l~~sp~g~~l~s~s~d-----g~I~lwdl~~~ 565 (737)
..++++|.. .++.+-.-|+ ..++|..+++...++...+ ...-.=.|||||.+|...-.| |.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 367888877 6677766664 5678988877665553211 111223699999998865443 67999999852
Q ss_pred ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEec--------C-----------cEEEEeCCCCceeEEecCC--
Q 004683 566 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--------G-----------QIDVYEAPTLNHTSQLVPD-- 624 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~d--------g-----------~I~iwd~~~~~~~~~~~~~-- 624 (737)
- ..+-.+. .|. -....+.+.+||+.+++... | ++.+.|..+|..+.+...+
T Consensus 151 f----qrvgE~~-t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 151 F----QRVGEFS-THG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred c----ceecccc-cCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 1 1122122 222 34567899999999887321 1 2455665667666544332
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCe-----EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 625 KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 625 ~h~~~v~~~~~sp~~~~l~sgs~dg~-----I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+..+|..++..+||..++.+-..|. -.|=....++.+.-+....-... .-.-|+-+++.+-.++-..+|+-
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecC
Confidence 34567888998888887765543321 11111223333333321100000 00112447888774554445555
Q ss_pred CCCcEEEEecCCCceeeee
Q 004683 700 TNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~~~w~~ 718 (737)
..+...+||..++.-.-..
T Consensus 300 ~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCCeEEEEEcCCCcEEecc
Confidence 5567889999999754333
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=0.76 Score=48.76 Aligned_cols=254 Identities=14% Similarity=0.148 Sum_probs=106.5
Q ss_pred eeecCCCCCCCCeEEEEEe-----------cCCCEEEEEE-CCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeee
Q 004683 379 TLLLPDNSFGGRVVRLIYS-----------HSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN 446 (737)
Q Consensus 379 ~~~l~~~~h~~~V~~v~fs-----------pdg~~L~s~s-~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 446 (737)
++.+++ -.++....-|+ .+.++|+..+ .++.|.|.|+.+... .+++..+-..+.+..
T Consensus 57 rl~mp~--~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr---------~P~l~KvIe~~ev~~ 125 (461)
T PF05694_consen 57 RLPMPN--RGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPR---------KPRLHKVIEPEEVFE 125 (461)
T ss_dssp EEE-SS--S---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TT---------S-EEEEEE-HHHHHH
T ss_pred EEeCCC--CCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCC---------CCceEeeeCHHHHHh
Confidence 334554 23566666665 2467888887 478999999875432 111111100000000
Q ss_pred ccCCCCCCCeEEEEEe-CCEEEEEe---C----CeEEEEECCCCcEEEEecCCCC---CeEEEEEcCCC-eEEEEE----
Q 004683 447 DIAADPKDSISCFALR-GSHLFSAS---G----GKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFGF---- 510 (737)
Q Consensus 447 ~~~~~h~~~V~~v~~s-~~~l~s~s---d----g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~~-~l~sgs---- 510 (737)
. .+-..+-+.-+.- |+.++++- + |-+.+.|-++.+....+..... --..+.|.|.. .++|..
T Consensus 126 k--~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P 203 (461)
T PF05694_consen 126 K--TGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAP 203 (461)
T ss_dssp H--H-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---H
T ss_pred h--cCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCCh
Confidence 0 0000111111111 66666652 1 5688899888888777764222 23466677766 555543
Q ss_pred ----------------CCCeEEEEecCCCcEEEEEcCCC--cceEEEEEe--CCCCEEEE-EeCCCcEEEEeC-CCCcee
Q 004683 511 ----------------DDSSILVHCPCTKKTKAKLKGHQ--NRITCLAYS--LSLNVLVS-SGADAQLCVWDA-VGWKKL 568 (737)
Q Consensus 511 ----------------~dg~I~vwd~~~~~~~~~l~~~~--~~v~~l~~s--p~g~~l~s-~s~dg~I~lwdl-~~~~~~ 568 (737)
...++.+||+.+.+.++++.--. .....+.|. |+..+-++ +.-..+|..|-- ..++-.
T Consensus 204 ~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~ 283 (461)
T PF05694_consen 204 SMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA 283 (461)
T ss_dssp HHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE
T ss_pred hhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee
Confidence 34589999999999999886432 234456664 44444333 333445554433 444333
Q ss_pred eceeeeecccCC-----CCC--------CCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCC---ceeEEecCCC-----
Q 004683 569 CSKFLHSFQTGL-----VPE--------TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL---NHTSQLVPDK----- 625 (737)
Q Consensus 569 ~~~~~~~~~~~~-----~~~--------~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~---~~~~~~~~~~----- 625 (737)
..+.+. ++... -+. +.-|+.|.+|.|.++|.++ ..|.|+.||+..- +.+.++...+
T Consensus 284 a~kVi~-ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 284 AEKVID-IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp EEEEEE-E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B
T ss_pred eeEEEE-CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC
Confidence 333332 22110 000 1457899999999999985 7899999999752 2222221110
Q ss_pred ---------CCCCeEEEEEccCCCEEEEEe
Q 004683 626 ---------MDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 626 ---------h~~~v~~~~~sp~~~~l~sgs 646 (737)
-.+...-+..|.||+.|+..+
T Consensus 363 ~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 363 DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --TTS------S----EEE-TTSSEEEEE-
T ss_pred CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 022335677888998887654
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.011 Score=63.80 Aligned_cols=80 Identities=10% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEE
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 706 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i 706 (737)
...+..+.|+|.-.++|.+..+|.|-+..++ .+.++.++.+ +..+. .+++|.| ||+.||.|-.||+|++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--------~~~v~-~sL~W~~-DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--------GENVT-ASLCWRP-DGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--------CCccc-eeeeecC-CCCEEEEEecCCeEEE
Confidence 4568889999999999999999999999999 7778888643 22222 4999999 8999999999999999
Q ss_pred EecCCCceeee
Q 004683 707 IEPLESEVEWG 717 (737)
Q Consensus 707 Wd~~~~~~~w~ 717 (737)
-|+.++...-+
T Consensus 89 ~Dve~~~~l~~ 99 (665)
T KOG4640|consen 89 HDVEKGGRLVS 99 (665)
T ss_pred EEccCCCceec
Confidence 99999875544
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.54 E-value=0.0076 Score=39.58 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.1
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEe
Q 004683 482 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 519 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd 519 (737)
++....+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777888899999999999 999999999999996
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.53 E-value=0.51 Score=45.25 Aligned_cols=148 Identities=9% Similarity=0.021 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCeEEEEECC----------CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEE-EEeCCCcEEEEe-
Q 004683 494 IATYFILLPQDLFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWD- 561 (737)
Q Consensus 494 ~v~~~~~s~~~~l~sgs~d----------g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~-s~s~dg~I~lwd- 561 (737)
+.+.-..+|+|.+..|... |.++.|-.. ..+..+...-.--+.++|+.+.+.+. +-+.+-+|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 4455567899933444432 233333321 11222222223335788888776655 445566787777
Q ss_pred -CCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc-cC
Q 004683 562 -AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CD 638 (737)
Q Consensus 562 -l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-p~ 638 (737)
..++.....+.+..+......+.-..-.+++..+|...+++ ..++|...|..+|+.+.++..+ ...|+++||. |+
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGkn 265 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGKN 265 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCCC
Confidence 66655444333332322111000223346667788877776 6789999999999999998874 7789999996 44
Q ss_pred CCEEEEE
Q 004683 639 GKCIYVS 645 (737)
Q Consensus 639 ~~~l~sg 645 (737)
-..+++.
T Consensus 266 ~d~~yvT 272 (310)
T KOG4499|consen 266 LDILYVT 272 (310)
T ss_pred ccEEEEE
Confidence 4555543
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.41 E-value=0.42 Score=54.21 Aligned_cols=223 Identities=16% Similarity=0.112 Sum_probs=115.5
Q ss_pred CeEEEEECCCCcEEEEecCCCC-CeEEEEEcCCC-eEEEEECC-C-----eEEEEecCCCcEEEEEcCCCcceEEEE-Ee
Q 004683 472 GKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGFDD-S-----SILVHCPCTKKTKAKLKGHQNRITCLA-YS 542 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~-~l~sgs~d-g-----~I~vwd~~~~~~~~~l~~~~~~v~~l~-~s 542 (737)
..+..+|..++.....-.-... .-.++++. ++ ..++|+.| | ++..||..+++-.. +..-...-.... ..
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE
Confidence 4678888887754433221111 22233433 45 77888888 3 68889988776332 211111111111 12
Q ss_pred CCCCEEEEEeCCCc-----EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE-ecCCCEEEE-Eec------CcEEE
Q 004683 543 LSLNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLS-IHE------GQIDV 609 (737)
Q Consensus 543 p~g~~l~s~s~dg~-----I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~-~~d------g~I~i 609 (737)
-+|...|+|+.||. |-.||..+.+-....++ .. .....+. .-+|...++ |.+ .++..
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m---~~-------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM---LT-------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCC---Cc-------ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence 26788889998864 77788877432111111 11 1111111 224555555 433 35888
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEEcCCCeeEEEEecccccCCCCccCceeeEE
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 684 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg-----~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 684 (737)
||..++.....-.-. ....-..+ -.-++...+.||.|+ +|..||..+.+-...-... . + ..... .
T Consensus 449 YDP~t~~W~~~~~M~-~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~--~--rs~~g--~ 518 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMN-TRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--S--P--RSAVG--V 518 (571)
T ss_pred EcCCCCceeecCCcc-cccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--c--c--ccccc--E
Confidence 998776543221110 01111112 224677778888776 3777888776533321100 0 0 11111 2
Q ss_pred EEEccCCCCEEEEEECCC-----cEEEEecCCCceeeeecCC
Q 004683 685 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 685 v~~sp~d~~~las~s~Dg-----~V~iWd~~~~~~~w~~~~~ 721 (737)
+.+ ++.+.++|+.|| +|..||+.+. .|...+.
T Consensus 519 ~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~~~ 555 (571)
T KOG4441|consen 519 VVL---GGKLYAVGGFDGNNNLNTVECYDPETD--TWTEVTE 555 (571)
T ss_pred EEE---CCEEEEEecccCccccceeEEcCCCCC--ceeeCCC
Confidence 222 578889999886 6888988776 4776543
No 393
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=96.41 E-value=0.0055 Score=58.61 Aligned_cols=120 Identities=23% Similarity=0.258 Sum_probs=86.3
Q ss_pred CCchhhHhhhhhcccc--cCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccc
Q 004683 2 NGEWEKAEKYLSAFTK--LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 79 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (737)
.|+-++|..-+..+-+ +++|+ .++|-+++|+++|-+..+...+||+.++..|-+++.-+...+.++=..|++-=|
T Consensus 77 ~G~Ie~Aie~in~l~PeiLd~n~---~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf 153 (228)
T KOG2659|consen 77 EGQIEEAIEKVNQLNPEILDTNR---ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVF 153 (228)
T ss_pred hccHHHHHHHHHHhChHHHccch---hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHc
Confidence 5899999999999988 88888 899999999999999999999999999999999999887776665444432222
Q ss_pred cccccccCCC--CchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHh
Q 004683 80 RENEQLSGYT--NATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLI 133 (737)
Q Consensus 80 ~~~~~~~~~~--~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (737)
.. .+-|-++ -.-+.|..+.+++..-|=+..-- . ...+|-.|++.+
T Consensus 154 ~~-~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~~---~-----~~~~l~~llk~~ 200 (228)
T KOG2659|consen 154 EL-SQESPSAELLSQSLRQKVASEVNSAILASQEH---E-----SEPKLPFLLKLI 200 (228)
T ss_pred CC-cccCcHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-----ccchHHHHHHHH
Confidence 22 2222222 23567888888887655422211 1 345666666643
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.31 E-value=0.4 Score=54.40 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=99.5
Q ss_pred eEEEEEe-CCEEEEEe-C-C-----eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCC-----eEEEEecC
Q 004683 456 ISCFALR-GSHLFSAS-G-G-----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPC 521 (737)
Q Consensus 456 V~~v~~s-~~~l~s~s-d-g-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg-----~I~vwd~~ 521 (737)
..+++.. |...++|+ | | ++..||..+.+....-.-...+...-...-+| ..|+|+.|| +|-.||..
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 4455666 76777777 7 3 57888988766433111111111111112366 888999887 57788877
Q ss_pred CCcEEEEEcCCCcceEEEE-EeCCCCEEEEEeCCC------cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 522 TKKTKAKLKGHQNRITCLA-YSLSLNVLVSSGADA------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~-~sp~g~~l~s~s~dg------~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
+.+--. .........+.. ..-+|...++|+.++ ++..||..++.-....++. ... .-..++.-
T Consensus 405 ~~~W~~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---~~R-----~~~g~a~~- 474 (571)
T KOG4441|consen 405 TNKWTP-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---TRR-----SGFGVAVL- 474 (571)
T ss_pred CCcccc-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---ccc-----ccceEEEE-
Confidence 654211 111111222222 233677888888654 5778888875433322332 111 11123333
Q ss_pred CCCEEEE-EecC-----cEEEEeCCCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEecCC-----eEEEEEcCCCe
Q 004683 595 DQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSG-----HVKVFDTSTLE 660 (737)
Q Consensus 595 ~g~~l~~-~~dg-----~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~dg-----~I~vwd~~~~~ 660 (737)
++...++ |.|+ +|..||..+.+....-.. ......+... -+++..++|+.|| +|..||..+.+
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3444444 4554 378899877665433111 1112222222 3566777788775 56677766654
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.28 E-value=1.4 Score=43.90 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=109.9
Q ss_pred CeEEEEE-e-CCEEEEEe-C--CeEEEEECCCCcEEEEecCCCC-CeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEE
Q 004683 455 SISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPPP-IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 455 ~V~~v~~-s-~~~l~s~s-d--g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~ 528 (737)
-...+.| . |.++-+.+ - ..|+.+|+.+|+......-... ---.++...+....-.-.++...+||..+-+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 3557888 4 55666666 4 4799999999998776653221 22334444443444446788999999999988888
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcE
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 607 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I 607 (737)
+.- .+.=+.++ .+|+.++.......++++|..+.+......+. ..+.. -..++-+.+- +|...|-- ....|
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 863 34455665 46777877777788999998875443332222 11111 1345667776 45433334 67788
Q ss_pred EEEeCCCCceeEEecCC-------------CCCCCeEEEEEccCCCEEEEEe
Q 004683 608 DVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 608 ~iwd~~~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~l~sgs 646 (737)
...|..+|+++..+... ....-.+.+++.|..+.++..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999999887765210 0135688999998665555444
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.26 E-value=0.36 Score=54.81 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCEEEEEe-C------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCC-----eEEEEecCCCcEEE--
Q 004683 463 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA-- 527 (737)
Q Consensus 463 ~~~l~s~s-d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~~~~~-- 527 (737)
+..++.|| + ..+..||..+......-.-....-......-+| ..+.|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666666 4 247788987764322111111111111222356 666777654 48889988764321
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeeceeeeecccCCCCCC
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 584 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~dg-----------------------~I~lwdl~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
.+.........+ .-+|+..+.|+.++ .+..||..+..-. .+..+.....
T Consensus 384 ~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCcccc---
Confidence 111111111112 23677777777653 4777887764321 1221222211
Q ss_pred CCeEEEEEecCCCEEEEE-ec------CcEEEEeCCC-Ccee--EEecCCCCCCCeEEEEEccCCCEEEEEecCC--eEE
Q 004683 585 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVK 652 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~~-~d------g~I~iwd~~~-~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg--~I~ 652 (737)
.. +++.. +|+..+.| .+ ..+..||..+ .+-. ..+.. .......++ -+|+..++|+.|| .+.
T Consensus 456 -~~-~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~--~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 -RP-GVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTIL--HDNTIMMLHCYESYMLQD 528 (557)
T ss_pred -cC-cEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEE--ECCEEEEEeeecceeehh
Confidence 11 22222 34444443 32 2467899876 4432 22211 111122222 3778888999888 677
Q ss_pred EEEcCCCee
Q 004683 653 VFDTSTLEL 661 (737)
Q Consensus 653 vwd~~~~~~ 661 (737)
.||..+.+-
T Consensus 529 ~yd~~~~~W 537 (557)
T PHA02713 529 TFNVYTYEW 537 (557)
T ss_pred hcCcccccc
Confidence 788777653
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.22 E-value=0.015 Score=41.20 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=30.2
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEecCCCceeee
Q 004683 682 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~ 717 (737)
+..++|+| ..++||.|+.+|.|.++.+ ++++.|+
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 44999999 7899999999999999999 7777774
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.01 E-value=2.7 Score=45.18 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=54.6
Q ss_pred CCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEE-ccC----------------CCEEE-EE
Q 004683 585 TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCD----------------GKCIY-VS 645 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~-sp~----------------~~~l~-sg 645 (737)
..+.+++.+|++++.+++ .=|+|.++|+.++..++.+++-. +..+.-+.. .+. ..+|+ -+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 457889999999887776 44899999999998888877632 111111111 111 12233 45
Q ss_pred ecCCeEEEEEcCCCeeEEEEe
Q 004683 646 CKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 646 s~dg~I~vwd~~~~~~~~~~~ 666 (737)
-.-|.|.||.+.+|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 567999999999998877664
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.013 Score=55.87 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=65.5
Q ss_pred CCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEE-EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC-cceE
Q 004683 463 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFI-LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 537 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~-~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~-~~v~ 537 (737)
+..+++|+ +|.|++|+... |.....+..-...|.++. ...++ +..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 66677777 99999998762 222222222223333332 23344 88899999999999999888887777676 4555
Q ss_pred EEEEeCCCCEEEEE--eCCCcEEEEeCCC
Q 004683 538 CLAYSLSLNVLVSS--GADAQLCVWDAVG 564 (737)
Q Consensus 538 ~l~~sp~g~~l~s~--s~dg~I~lwdl~~ 564 (737)
....+..++.++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555566665 6666666676654
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.017 Score=55.09 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=43.4
Q ss_pred CCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 596 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 596 g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
+.-+++ +.+|.|++|...-..............-.+.+.-..++.+.++++.||.||.|++.-++.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 345555 58999999987622111111111111222222223466788999999999999999888777654
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.14 Score=59.00 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=76.1
Q ss_pred CCeEEEEEeCCEEEEEe-CCeEEEEECCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 454 DSISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 454 ~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
..+.+.+.-+..++.|+ .|.+-..|....-. ...-....++|++++|+.+| .++.|-.+|.|.+||+..++.++.+.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 33444444466777887 68888888754211 11112345689999999999 99999999999999999999998887
Q ss_pred CCCcceEEE---EEeCCCCEEEEEeCCCcEEEEeC
Q 004683 531 GHQNRITCL---AYSLSLNVLVSSGADAQLCVWDA 562 (737)
Q Consensus 531 ~~~~~v~~l---~~sp~g~~l~s~s~dg~I~lwdl 562 (737)
.|..+...+ .+..++..++++...|. +|.+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 776665554 34455667888777776 5554
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.88 E-value=2.6 Score=43.44 Aligned_cols=159 Identities=9% Similarity=0.006 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 004683 489 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 489 ~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
....+.+..+.-+++| ++++++......-||.-...-...-+.....|.++.|.|++...+. ...|.|++=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3445678888889999 7777765555667875432222222334678999999999876554 4788888776222111
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEEEEe
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.-.+++..+.... ..+..++|.+++...+++..|.+. .....|+--..... ..-...++.+.|.++.+-++. +
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-G 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-C
Confidence 1111111111111 458999999998888888877654 44555554433321 122556889999766554444 4
Q ss_pred cCCeEEEE
Q 004683 647 KSGHVKVF 654 (737)
Q Consensus 647 ~dg~I~vw 654 (737)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 67877554
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.88 E-value=1.6 Score=50.59 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=48.7
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecC---------CCcE--E-EEE--------cCCCcceEEEEEeCC---CCEEE
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKT--K-AKL--------KGHQNRITCLAYSLS---LNVLV 549 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~---------~~~~--~-~~l--------~~~~~~v~~l~~sp~---g~~l~ 549 (737)
.|..+.++|+| .++..|..|.+.+.=.+ .|+. . +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 57888999999 88887776644432221 1111 1 111 123467889999995 57899
Q ss_pred EEeCCCcEEEEeCCC
Q 004683 550 SSGADAQLCVWDAVG 564 (737)
Q Consensus 550 s~s~dg~I~lwdl~~ 564 (737)
+-+.|+++|+||+..
T Consensus 166 vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 166 VLTSDNTLRLYDISD 180 (717)
T ss_pred EEecCCEEEEEecCC
Confidence 999999999999975
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.86 E-value=1.9 Score=50.54 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=98.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe-------------EEEEEcC---CCeEEEEEC----------CCeE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI 515 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v-------------~~~~~s~---~~~l~sgs~----------dg~I 515 (737)
++.++.++ |+.+.-.|..+|+.+..+... +.| ..+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44666666 999999999999998776321 111 0111112 335566643 6889
Q ss_pred EEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 516 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 516 ~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
+-+|.++|+.+-.+..-.-.... ..+.+.....++.+. ...-+|.+.+. +. +..+.. +..+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~--~~~~g~~~~~gg~n~W~~~s~D~~~gl------vy-~ptGn~-------~pd~~g 402 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTA--PPAPGETYTRNTPNSWSVASYDEKLGL------VY-LPMGNQ-------TPDQWG 402 (764)
T ss_pred EEEECCCCcEeeEEecCCCCccc--CCCCCCEeccCCCCccCceEEcCCCCe------EE-EeCCCc-------cccccC
Confidence 99999999988776521100010 011333222222211 23344444421 11 122211 000100
Q ss_pred CCCEEEE-EecCcEEEEeCCCCceeEEecCCCCC-------CCeEEEEEcc-CCC---EEEEEecCCeEEEEEcCCCeeE
Q 004683 595 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 595 ~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~-------~~v~~~~~sp-~~~---~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
..+.... -..++|.-.|.++|+..-.++..+|. ....=+.+.. +|+ .|+.++.+|.+++.|..+|+.+
T Consensus 403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 403 GDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 0110001 13466777788888877666543231 1111122332 563 7889999999999999999988
Q ss_pred EEE
Q 004683 663 CQI 665 (737)
Q Consensus 663 ~~~ 665 (737)
...
T Consensus 483 ~~~ 485 (764)
T TIGR03074 483 VPV 485 (764)
T ss_pred eec
Confidence 754
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=2.3 Score=42.66 Aligned_cols=177 Identities=10% Similarity=0.088 Sum_probs=107.0
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 004683 489 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 489 ~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~ 566 (737)
.+-...++++.|+|+. .|++......-.|+=..+|+.+.++.- .-+....+.+..+|+++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999 777777666666666667888877642 12334567888888888888888999888776542
Q ss_pred eeeceeeeecccCCCCC-CCCeEEEEEecCCCEEEEEec-CcEEEEeCCCCc-ee--EEecCCC-----CCCCeEEEEEc
Q 004683 567 KLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIHE-GQIDVYEAPTLN-HT--SQLVPDK-----MDLPITYATYS 636 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~~~~d-g~I~iwd~~~~~-~~--~~~~~~~-----h~~~v~~~~~s 636 (737)
.........++-+..+. +...-.++|+|....+.+..+ .=+.||.+..+. .+ .....+. .-..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 21111110122121111 256778999999988888643 445555443221 11 1110000 12356778888
Q ss_pred c-CCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 637 C-DGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 637 p-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
+ .+.+++-+.+++.+.-.|... ..+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 6 566667777778887777664 4354443
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.038 Score=63.53 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=74.5
Q ss_pred CCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCC
Q 004683 596 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 674 (737)
Q Consensus 596 g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g 674 (737)
+.+++.| ..|.+...|.... .-.-..+....++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..+ |
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 4556665 5678888887532 2111222233789999999999999999999999999999999999888755 3
Q ss_pred CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 675 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 675 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+.. ..++.+.+.. ++..+.++..-|. +|.+.-.
T Consensus 173 ap~--t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 173 APV--TGVIFVGRTS-QNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred Ccc--ceEEEEEEeC-CCcEEEEccCCCc--eEEEEec
Confidence 222 3344677766 5567777776675 6776533
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=1.2 Score=44.60 Aligned_cols=170 Identities=8% Similarity=0.083 Sum_probs=106.9
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcE
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 607 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I 607 (737)
+.+....+.+++|+|+.+.|++......-.||=...|+.+...++.- - ...-.+.+..+|+++++. .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~-----~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---F-----SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---c-----CChhHeEEecCCEEEEEehhcceE
Confidence 34555669999999999999888877777777556666655555541 1 234567788888888875 78888
Q ss_pred EEEeCCCCceeEE-----e--cCCCC-CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc-cC
Q 004683 608 DVYEAPTLNHTSQ-----L--VPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI-SL 678 (737)
Q Consensus 608 ~iwd~~~~~~~~~-----~--~~~~h-~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~-~~ 678 (737)
.++.+.....+.. + ....+ +...-+++|+|..+.++.+-+-.-+.||.+..+... +..+... ++. ..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~--~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASL--DPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--ccccccc--Cccccc
Confidence 8888765432211 1 11112 566889999998888888888777777766633211 1111000 100 11
Q ss_pred cee---eEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 679 ELY---PLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 679 ~v~---~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
.++ +.++.|++..+.+++-+.+++.+.-.|..
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111 34778887667777777777766666653
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.69 E-value=3.1 Score=42.89 Aligned_cols=278 Identities=13% Similarity=0.065 Sum_probs=123.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
...+..|.|..+..-+++ +..++| +...+ |.. -|+........ ...-...++.|. ...+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~D-----GG~-------tW~~~~~~~~~-----~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-GAYGTI--LKTTD-----GGK-------TWQPVSLDLDN-----PFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-ETTTEE--EEESS-----TTS-------S-EE-----S----------EEEEEEEETTEEE
T ss_pred CCceEEEEEecCCEEEEE-ecCCEE--EEECC-----CCc-------cccccccCCCc-----cceeeEEEEEecCCceE
Confidence 568999999955555555 455654 33322 111 14322211000 012235677777 4445
Q ss_pred EEEeCCeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEE-EEEcCCCcceEEEEEe
Q 004683 467 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLAYS 542 (737)
Q Consensus 467 ~s~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~-~~l~~~~~~v~~l~~s 542 (737)
++|..+. .+...+.|+.-..+. .-......+....++....++..|.|+.=. +.|+.- .....-.+.+..+.-+
T Consensus 76 ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 76 IVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred EEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 5544554 333444454433332 112233334443444222234445544322 334332 2234445778888899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC-CCCceeEE-
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ- 620 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~-~~~~~~~~- 620 (737)
++|+++++++......-||--... ..+.. .... ..|.+|.|.|++...+++..|.|+.=+. ........
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~---w~~~~-r~~~-----~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTT---WQPHN-RNSS-----RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS----EEEE---SS-----S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred CCCcEEEEECcccEEEEecCCCcc---ceEEc-cCcc-----ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence 999988888766666678754311 11222 1111 6899999999998877778888888772 22221111
Q ss_pred ecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 621 LVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 621 ~~~~-~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
+.+. .....+..++|.+++...++|+ .|.+ +.....|+.=.+-..... .....+ .+.|.+ +.+-+| .+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~-----~~~n~~--~i~f~~-~~~gf~-lG 293 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGEN-----VPSNLY--RIVFVN-PDKGFV-LG 293 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTT-----SSS-----EEEEEE-TTEEEE-E-
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccC-----CCCceE--EEEEcC-CCceEE-EC
Confidence 1111 1244588999998877777665 4544 334555553333321100 012244 788876 334444 45
Q ss_pred CCCcEEEE
Q 004683 700 TNGRVHVI 707 (737)
Q Consensus 700 ~Dg~V~iW 707 (737)
.+|.|-=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78876544
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.62 E-value=1.4 Score=46.75 Aligned_cols=190 Identities=19% Similarity=0.145 Sum_probs=93.0
Q ss_pred CCEEEEEe--CCeEEEEECCC----CcEEEEecC---CC----CCeEEEEEcCCC-eEEEE--ECC----CeEEEEecCC
Q 004683 463 GSHLFSAS--GGKISIFSLET----FQTLATFAN---PP----PIATYFILLPQD-LFAFG--FDD----SSILVHCPCT 522 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~----~~~~~~~~~---~~----~~v~~~~~s~~~-~l~sg--s~d----g~I~vwd~~~ 522 (737)
.++|+..+ .+.|+|.|+.+ .+..+.++. +. ..-..+..-|+| .++++ ..+ |.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56788888 68999999974 344555532 11 122345556888 66554 222 3688889888
Q ss_pred CcEEEEEcCC---CcceEEEEEeCCCCEEEEEeC--------------------CCcEEEEeCCCCceeeceeeeecccC
Q 004683 523 KKTKAKLKGH---QNRITCLAYSLSLNVLVSSGA--------------------DAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 523 ~~~~~~l~~~---~~~v~~l~~sp~g~~l~s~s~--------------------dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
.+....+... ...-..+.|.|..+.++|... ..++.+||+.+. +.++++.-+
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-----~~~Q~idLg 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-----KLLQTIDLG 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-----EEEEEEES-
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-----cEeeEEecC
Confidence 8877777542 234457788998888888642 357999999984 444444443
Q ss_pred CCCCCCCeEEEEEec--CCCEEEE-E-ecCcEEEEeC-CCCc----eeEEecCCCC---------------CCCeEEEEE
Q 004683 580 LVPETTIVNHIQFHP--DQIHLLS-I-HEGQIDVYEA-PTLN----HTSQLVPDKM---------------DLPITYATY 635 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp--~g~~l~~-~-~dg~I~iwd~-~~~~----~~~~~~~~~h---------------~~~v~~~~~ 635 (737)
... ..+..+.|.. +..+=++ + -.++|..|-- ..++ .+..+..... ..-|+.+.+
T Consensus 242 ~~g--~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 242 EEG--QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp TTE--EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCC--CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 321 2455666654 4444443 2 4455555543 3332 2222211100 244789999
Q ss_pred ccCCCEEEEEec-CCeEEEEEcCCC
Q 004683 636 SCDGKCIYVSCK-SGHVKVFDTSTL 659 (737)
Q Consensus 636 sp~~~~l~sgs~-dg~I~vwd~~~~ 659 (737)
|.|.++|+.++. +|.|+.||+...
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccCCCEEEEEcccCCcEEEEecCCC
Confidence 999999987665 799999999864
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.62 E-value=0.58 Score=50.99 Aligned_cols=146 Identities=8% Similarity=-0.007 Sum_probs=89.5
Q ss_pred CCCeEEEEEe-CCEEEEEe----CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-----eEEEEECCCeEEEEecCC
Q 004683 453 KDSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 453 ~~~V~~v~~s-~~~l~s~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-----~l~sgs~dg~I~vwd~~~ 522 (737)
-.++..++|. |+.++-.. +|.+++=|. +.+ |....|..+.|.|-+ .+++......|.||.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4578899999 76554332 455554332 223 333467889998853 567777788999998752
Q ss_pred -----CcEEEEEcC-C--Cc--ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 523 -----KKTKAKLKG-H--QN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 523 -----~~~~~~l~~-~--~~--~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
++.+..-.. . .- --..+.|+|....+++-.....=.+++++.... +.-..+ .++ +.|.|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s---rVkaDi-~~~----G~IhCACW 163 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS---RVKADI-KTS----GLIHCACW 163 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc---eEEEec-cCC----ceEEEEEe
Confidence 222221111 1 11 124678999988887766655555666654221 111112 222 78999999
Q ss_pred ecCCCEEEEE--ecCcEEEEeCC
Q 004683 593 HPDQIHLLSI--HEGQIDVYEAP 613 (737)
Q Consensus 593 sp~g~~l~~~--~dg~I~iwd~~ 613 (737)
.+||+.|+++ +.=.-++||-.
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCc
Confidence 9999988875 44456889854
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.037 Score=39.14 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999999 5554
No 412
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.25 E-value=2.8 Score=45.06 Aligned_cols=205 Identities=13% Similarity=0.086 Sum_probs=112.1
Q ss_pred CCeEEEEECCCeEEEEecCCCcEEEEEcCC--CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 503 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 503 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~--~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
++.++++..+|.|.-.|..++..+.....- ...+.+-.+..+|+ ++.++.++.++.+|.++++......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C-
Confidence 446677788888888888888765333211 12222223333665 7778889989999997766554443331 0
Q ss_pred CCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCC-CCCCeEEEEEccCCCEEEEEec--CCeEEEEEcC
Q 004683 581 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS 657 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~sgs~--dg~I~vwd~~ 657 (737)
..+.....-.++..++.+.++.+.-.|..+|...-.+.... -...+..... .....++.+.. ++.+.-.|..
T Consensus 143 ----~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 ----PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ----eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEcc
Confidence 01222223334433333467888888887787765543211 0111111111 23345555555 6778888888
Q ss_pred CCeeEEEEecccccCCCCc--cCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 658 TLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~--~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
+|........+........ ...+....+. . + .-+..++.+|.+.-.+..+++.+|..+.+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v--~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-V--D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEE-E--C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 9988877543211110000 0011111111 1 1 23466677888999999999999988664
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=95.22 E-value=5 Score=42.36 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=85.4
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEE-EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEe
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 611 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~l-wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd 611 (737)
...+.++.+.|++.+++++. .|.+.. +|-.. + ....+. .+.. ..++++.+.++++.++++..|.+.+=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg-~--tW~~~~---~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQ-T--AWTPHQ---RNSS---RRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCC-C--eEEEee---CCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 45688999999887665554 555432 22211 0 011111 1111 578999999999988888777765433
Q ss_pred CCCCceeEEecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 612 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 612 ~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
...+..-.....+ .....+.++.+.|++..+++| .+|.+. .....|+.-....... +- ....+ .+.|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~~-~~~~~--~~~~~~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----EV-PSNFY--KIVFLD 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----CC-CcceE--EEEEeC
Confidence 4444332222111 013457889999988765554 567664 3444444322221100 00 11233 677665
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 004683 690 LEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~ 710 (737)
++..++ .+..|.|--|+-.
T Consensus 313 -~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 313 -PEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred -CCceEE-ECCCceEEEecCC
Confidence 455555 5578888877653
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.12 E-value=6 Score=42.74 Aligned_cols=278 Identities=14% Similarity=0.081 Sum_probs=145.9
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-------CCEEEEEeCC
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 472 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~~~l~s~sdg 472 (737)
...++.||.+|.++||+............ ... .-..+|..+..- ...||.-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~ll-------lE~------------~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLL-------LET------------QLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEE-------EEE------------ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 35899999999999999754332000111 111 133455544432 2345554456
Q ss_pred eEEEEECCC--Cc-------EEEEecCCC--CCeEEEEEcC----CC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcc
Q 004683 473 KISIFSLET--FQ-------TLATFANPP--PIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 535 (737)
Q Consensus 473 ~i~vwd~~~--~~-------~~~~~~~~~--~~v~~~~~s~----~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~ 535 (737)
.+.+|.+.. |. .+..+..|. .....+++-| .+ ++.+-+.||.+.+|+-+.-.....+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 667776621 11 112222222 1223333322 32 788999999999999654433333332 222
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---e---------------eeceeeeecccCCCCCCCCeEEEE---Eec
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWK---K---------------LCSKFLHSFQTGLVPETTIVNHIQ---FHP 594 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~---~---------------~~~~~~~~~~~~~~~~~~~v~~l~---~sp 594 (737)
...+.+.+....+++++.+..+..|....-. . ....+-.++.-| ..+..+. ++.
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS 251 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence 3457888888899999999898888653200 0 000011111222 2333333 333
Q ss_pred CCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc----cCC---CEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 595 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 595 ~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s----p~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
....+++-...++.+.+- +|......+.. ..+.....|. .++ ..++.++.++++.||.=. ++++....
T Consensus 252 ~~~~IvvLger~Lf~l~~-~G~l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l 326 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKD-NGSLRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQL 326 (418)
T ss_pred CCceEEEEecceEEEEcC-CCeEEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCC
Confidence 334455545566777766 46554443321 1112112221 122 258889999999998744 34444322
Q ss_pred ccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 668 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 668 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
. ..++.+....|.. -..+|++-+++|.+.+-=+-|.-...
T Consensus 327 ~--------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 327 P--------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred C--------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccc
Confidence 1 2334433333444 35689999999999987665543333
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.94 E-value=1.8 Score=43.57 Aligned_cols=151 Identities=19% Similarity=0.096 Sum_probs=84.2
Q ss_pred ceEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEE
Q 004683 535 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 610 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s---~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iw 610 (737)
.+.+.+++++++.++... ....++++..... ......+ ..+....|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------VRPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------ceeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688999999999877666 3345556554431 1111222 467788999998777663 44555555
Q ss_pred -eCCCCceeE-EecCCCCCCCeEEEEEccCCCEEEEEe---cCCeEEEEEcC---CCeeEEEEecccccCCCCccCceee
Q 004683 611 -EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 611 -d~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~sgs---~dg~I~vwd~~---~~~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
+..++.... ......-...|+++.+||||..++... .++.|+|=-+. .+............. .....+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~----~~~~~v 168 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP----PLLSDV 168 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc----cccCcc
Confidence 333333221 221111122899999999999887654 35778776554 231111111111000 111234
Q ss_pred EEEEEccCCCCEEEEEECCC
Q 004683 683 LVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg 702 (737)
..++|.+ ++.+++.+...+
T Consensus 169 ~~v~W~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWSD-DSTLVVLGRSAG 187 (253)
T ss_pred eeeeecC-CCEEEEEeCCCC
Confidence 5999999 666665554443
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.90 E-value=4.8 Score=40.55 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=86.9
Q ss_pred CeEEEEEcCCC-eEEEEE---CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe-CCCCcee
Q 004683 494 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 568 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs---~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd-l~~~~~~ 568 (737)
.+.+.++++++ .++... ....++++.... .....+.+ ..+..-+|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 67889999999 665544 233566655432 22222232 3677889999987777767667777764 222211
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E---ecCcEEEEeCC---CCceeE-----EecCCCCCCCeEEEEEc
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TLNHTS-----QLVPDKMDLPITYATYS 636 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~---~dg~I~iwd~~---~~~~~~-----~~~~~~h~~~v~~~~~s 636 (737)
.... +...... ..|..+.+||||..++. . .++.|.+--+. .+.+.. .... .....++.+.|.
T Consensus 101 --~~~~-v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 --EPVE-VDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS 174 (253)
T ss_pred --eeEE-ecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence 1111 1111110 27999999999998886 3 35677776543 221111 1111 125678999999
Q ss_pred cCCCEEEEEecCC
Q 004683 637 CDGKCIYVSCKSG 649 (737)
Q Consensus 637 p~~~~l~sgs~dg 649 (737)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9998887766543
No 417
>PRK10115 protease 2; Provisional
Probab=94.79 E-value=11 Score=44.11 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=98.2
Q ss_pred CeEEEEEe--CCEEEEEe--CC----eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-C-----CeEEEEe
Q 004683 455 SISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHC 519 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~s--dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-d-----g~I~vwd 519 (737)
.+..+.++ |++|+.+. +| .|++.|+.+|..+...-... -..++|++|+ .|+.... + ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35566777 77777665 23 68899998886432221111 1468999998 4444332 2 3688889
Q ss_pred cCCC--cEEEEEcCCCcceE-EEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 520 PCTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 520 ~~~~--~~~~~l~~~~~~v~-~l~~sp~g~~l~s~s~---dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
+.++ +....+........ .+..+.++++++..+. ++.+.+++....... ...+. .... .....+. +
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~ 277 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-H 277 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-e
Confidence 9887 33444543333333 3333448887665443 356888885321100 11111 1111 1222222 3
Q ss_pred cCCCEEEEEe----cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 594 PDQIHLLSIH----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 594 p~g~~l~~~~----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
..+.+.+.+. ...|...++........+..+.....+..+.++ .+.++++...+|.-+++-+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333333332 224555555421122333332223467888887 34566667777765555443
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.77 E-value=1.7 Score=47.58 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=87.0
Q ss_pred CeEEEEEcCCC-eEEEEE--CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCc
Q 004683 494 IATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL----NVLVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs--~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g----~~l~s~s~dg~I~lwdl~~~~ 566 (737)
++..++|.... .+++.- .+|.+++=| .+.+..|. .|..+.|.|-+ ..++.......|.+|.+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 56778886433 444433 344444332 23344443 48899999843 356667778899999986322
Q ss_pred eeeceeee--e--cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCC--CceeEEecCCCCCCCeEEEEEccCC
Q 004683 567 KLCSKFLH--S--FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 567 ~~~~~~~~--~--~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~--~~~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
....+.+. + +.+... --...+.|+|....|++ .....-.++++.. .+....+.. .+-|.|.||.+||
T Consensus 94 ~e~~K~l~sQtcEi~e~~p---vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFP---VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cccccceeeeeeeccCCcc---cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 11111111 0 111100 12346789999988887 4333334455543 333344433 6789999999999
Q ss_pred CEEEEEe-cCCeEEEEEcCC
Q 004683 640 KCIYVSC-KSGHVKVFDTST 658 (737)
Q Consensus 640 ~~l~sgs-~dg~I~vwd~~~ 658 (737)
+.|+++- ..=.-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 8776543 334568898554
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.74 E-value=1 Score=50.82 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=75.5
Q ss_pred CeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc--cCCCEEEEEecCCeEEEEEcC-----
Q 004683 586 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS----- 657 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~sgs~dg~I~vwd~~----- 657 (737)
.+.-+.-|.-++..++. ....+.|||.+.+.....-.- .....|..+.|. |+|+.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 45556666666666664 556899999988775443322 237889999996 799999999999999998642
Q ss_pred ----CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 658 ----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 658 ----~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+...+..+... .++.+++. +..|.+ +|.+++.+ ++.+.|++-.-
T Consensus 110 ~~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCCc
Confidence 22333443322 23344555 899999 66555443 35688877543
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.73 E-value=0.73 Score=51.93 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=71.9
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe--cCCCEEEE-EecCcEEEEe
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IHEGQIDVYE 611 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~g~~l~~-~~dg~I~iwd 611 (737)
.+.-+.-+.-++..++.+....+.|||.+.+....... + ..+ +.|..+.|. |+|+.+++ |..+.|.+|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---f-~~~----~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---F-SED----DPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---e-cCC----CceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 34444445555555555555679999999865322222 1 112 689999886 67777665 8889998885
Q ss_pred CC---------CCceeEEecCCCC-CCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 612 AP---------TLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 612 ~~---------~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
-. +..++..+....+ ..+|.+.+|.++|.++++++ +.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 32 1234444432223 36799999999998777654 678888754
No 421
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.72 E-value=4.7 Score=39.95 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=130.0
Q ss_pred eEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 495 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 495 v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
-..++-.||| .-+++...+.|--.|..+|+....--+....-..+...|||..-++-+.. .|.-.|-++.+... .
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~---f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR---F 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---e
Confidence 3466778899 88888888899999999998776655556667788899999877765544 45555665543211 1
Q ss_pred eecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 004683 574 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 574 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v 653 (737)
. ++..|.. .......|.+.|..-.++..|.---.|-. ...+.++... .....+.+|..|||..-++.-.++.|-.
T Consensus 140 ~-lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa-~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 140 P-LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPA-RNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred e-cccccCC--CcccceeeCCCccEEEeeccccceecCcc-cCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 1 3333433 67888999999988887543322222221 2223344332 3566778999999998888778888888
Q ss_pred EEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
.|..++. -.++........| .. .+--+| -+..-+|-...+.+.-+|..... |..
T Consensus 215 idp~~~~-aev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s--W~e 268 (353)
T COG4257 215 IDPFAGH-AEVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIE 268 (353)
T ss_pred cccccCC-cceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc--cee
Confidence 8887773 2333322111111 11 233345 56777777777888888887654 554
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=3.2 Score=43.93 Aligned_cols=155 Identities=9% Similarity=0.093 Sum_probs=93.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
|..|.+....+...|.+.=|-+.+.+ +.....+... ..++|.++.||+|.+.||.--.|++|.+.+....+.
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~---- 100 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS---- 100 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCch----
Confidence 34444444444445666666665422 1222222222 367999999999999999999999999988643211
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCC-CcEEEEecCCCCCeEEEEEcCCC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD 504 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 504 (737)
...-.......+..|....|+ ..-+|...+.-+-+|-+.. ...++..+.|...|.-..|+++.
T Consensus 101 ---------------~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 101 ---------------QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred ---------------hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 000000000234558888998 7777777766666666543 33455566788888888888888
Q ss_pred ---eEEEEECCCeEEEEecCCCc
Q 004683 505 ---LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 505 ---~l~sgs~dg~I~vwd~~~~~ 524 (737)
.++++-..+++.=+-++++.
T Consensus 166 ~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 166 AVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred ceEeeeccccccccccEEEeece
Confidence 33333344455445555443
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.60 E-value=8 Score=41.71 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=52.0
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC-----------------C
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----------------Q 596 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----------------g 596 (737)
..+.++..+|++++.++...=|.|.++|+.++. .++ +.+|... ..+.-+..... .
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-----vvr-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGI-----VVR-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-----hhh-hhccCcc--ceEEEEEeecccccccccccccCCCCcce
Confidence 346789999999999888888999999999843 222 2333211 11111111111 1
Q ss_pred CEEEE-E-ecCcEEEEeCCCCceeEEecC
Q 004683 597 IHLLS-I-HEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 597 ~~l~~-~-~dg~I~iwd~~~~~~~~~~~~ 623 (737)
.+|+. . .-|.|.||++++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 23444 3 779999999999888777644
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.48 E-value=1.4 Score=51.19 Aligned_cols=90 Identities=11% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcC----------CCee--EEEEe--cccccCCCCccCceeeEEEEEccC--
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTS----------TLEL--RCQIN--LTAYAQPGTISLELYPLVIAAHPL-- 690 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~----------~~~~--~~~~~--~~~~~~~g~~~~~v~~~~v~~sp~-- 690 (737)
...|..+.++|+|++|+..|..|.+ |-.+. .|+. .++.. ...+... +....+..+.|||.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~---~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS---NSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccC---CCCceEEEEEEcCCCC
Confidence 4578899999999999988876644 33332 1111 11111 1111111 22355669999994
Q ss_pred CCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 691 EPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
++..|+.-+.|+++|+||+...+..|...+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 247899999999999999988776665544
No 425
>PHA03098 kelch-like protein; Provisional
Probab=94.45 E-value=2.3 Score=48.33 Aligned_cols=186 Identities=10% Similarity=-0.036 Sum_probs=87.2
Q ss_pred CCEEEEEe-CC------eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC-----CeEEEEecCCCcEEEEE
Q 004683 463 GSHLFSAS-GG------KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKL 529 (737)
Q Consensus 463 ~~~l~s~s-dg------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~~~~~~l 529 (737)
+..++.|+ ++ .+..||..+.+....-.-...........-++ .++.|+.+ ..+..||..+++-.. .
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE-E 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee-C
Confidence 55556665 32 57788887765532211111111111122356 66677655 257788887664322 1
Q ss_pred cCCCcc-eEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE
Q 004683 530 KGHQNR-ITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 602 (737)
Q Consensus 530 ~~~~~~-v~~l~~sp~g~~l~s~s~d------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 602 (737)
.....+ ....+..-+++..+.|+.+ +.+..||..+.+-. .+..++.+.. . .+++. -+++..+.|
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~----~-~~~~~-~~~~iyv~G 444 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY----G-GCAIY-HDGKIYVIG 444 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc----C-ceEEE-ECCEEEEEC
Confidence 111011 1111122356677777632 35788998764321 1221222221 1 12222 244544443
Q ss_pred -ec--------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCe
Q 004683 603 -HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 660 (737)
Q Consensus 603 -~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~ 660 (737)
.+ ..+.+||..+++-... ........-.+++ ..+++.++.|+.+ +.|.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 21 2388999887654321 1111111111122 2367777777654 467888877654
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=7.6 Score=43.90 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=88.6
Q ss_pred CeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEe----cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEe-cCCCcEE
Q 004683 455 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHC-PCTKKTK 526 (737)
Q Consensus 455 ~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd-~~~~~~~ 526 (737)
.+-.+.|+ ...|++.. +|++.+|++. |..+... ......|..+.+..+| .+.+. +|.+.+-+ ... ...
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~-~~~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE-PKL 160 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc-chh
Confidence 67789999 77777777 9999999985 4433332 2223345556666677 44443 44444433 322 122
Q ss_pred EEEcC---CCcceEEEEEeCCCCE-EEEEeCCCc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 527 AKLKG---HQNRITCLAYSLSLNV-LVSSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 527 ~~l~~---~~~~v~~l~~sp~g~~-l~s~s~dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
.++.. ...+-.|-+..+++.. .....-+-. ..++..... . .....+...+ ..+..+.+||+.++|+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~-~q~~~~~~~~----~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---R-VQLHALSWPN----SSVVKISVSPNRRFLA 232 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---c-ccccccCCCC----ceEEEEEEcCCcceEE
Confidence 22221 1112122222222211 111111100 011111111 0 1111122333 5788999999999999
Q ss_pred E-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc
Q 004683 601 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 601 ~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 637 (737)
. ...|.|.+-+....++...+....|. ..-.++|.-
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 8 78999999998877777776543332 222566643
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.09 E-value=1.6 Score=46.85 Aligned_cols=149 Identities=9% Similarity=0.053 Sum_probs=78.3
Q ss_pred cceEEEEEeCCCCEEEEEe-----------CCC-cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 534 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s-----------~dg-~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
.....++|.++|+++++-. ..+ .|.+++-..+.-... ....+..+. .....+++.++| .+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCC----CCccceeEecCC-EEEe
Confidence 3456789999998777643 223 676665433211110 111122221 356789999998 4444
Q ss_pred EecCcEEEE-eCCCC-----c--eeE-EecCCC--CCCCeEEEEEccCCCEEEEEecC-------------------CeE
Q 004683 602 IHEGQIDVY-EAPTL-----N--HTS-QLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 651 (737)
Q Consensus 602 ~~dg~I~iw-d~~~~-----~--~~~-~~~~~~--h~~~v~~~~~sp~~~~l~sgs~d-------------------g~I 651 (737)
+ ...|..| |.... + .+. .+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 3445544 54311 1 121 122110 13447789999999876654421 345
Q ss_pred EEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC
Q 004683 652 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 701 (737)
Q Consensus 652 ~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 701 (737)
.-++..+++.. .+. .| --++..++|+| ++.++++-..+
T Consensus 167 ~r~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred EEEecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCC
Confidence 55555554422 221 12 12244899999 78888775544
No 428
>PHA03098 kelch-like protein; Provisional
Probab=93.64 E-value=3.1 Score=47.27 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCEEEEEe-C------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC--------CeEEEEecCCCcEE
Q 004683 463 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTK 526 (737)
Q Consensus 463 ~~~l~s~s-d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d--------g~I~vwd~~~~~~~ 526 (737)
+...+.|+ + ..+..||+.+++....-..........+...++ .++.|+.+ ..+.+||..+++-.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 66666666 2 358899988765432211111111111222355 55556543 23888998876533
Q ss_pred EE--EcCCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 004683 527 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 565 (737)
Q Consensus 527 ~~--l~~~~~~v~~l~~sp~g~~l~s~s~d-----g~I~lwdl~~~ 565 (737)
.. +.........+. -+++.++.|+.+ +.|.+||..+.
T Consensus 470 ~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 470 ELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred eCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 21 111111111222 266777777654 46788887763
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.98 Score=52.82 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=91.0
Q ss_pred cceEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceee---ceeeeecccCCCCCCCCeEEEEEecCCCEE-EE-EecCc
Q 004683 534 NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-IHEGQ 606 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s--~dg~I~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~-~~dg~ 606 (737)
.++..+...+|+...++.. .+-.|..||++.-..-. ..++..-..... ......++.|.|.-... ++ ..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~e-k~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFE-KPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhc-cccccccccccCCccchhhhhccccc
Confidence 4566777778876544433 33478999998632211 111110000000 01456678888875332 23 48999
Q ss_pred EEEEeCCCCce-eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEE
Q 004683 607 IDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 685 (737)
Q Consensus 607 I~iwd~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 685 (737)
|++..+..... +..+ ......++++|+|.|+.++.|-..|++.-|... ++...++....+ .....++++
T Consensus 180 l~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~------~e~yrvl~v 249 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV------EENYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc------CCCcceeEE
Confidence 99887753322 2222 236788999999999999999999999888754 444444433221 123567799
Q ss_pred EEccCCCCEEEEE
Q 004683 686 AAHPLEPNRIALG 698 (737)
Q Consensus 686 ~~sp~d~~~las~ 698 (737)
+|-. ...++++-
T Consensus 250 ~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 250 TWLS-TQEFLVVY 261 (1405)
T ss_pred EEec-ceeEEEEe
Confidence 9987 34555543
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.14 E-value=8.8 Score=37.16 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=104.8
Q ss_pred CCeEEEEECCCCcEEE-EecCCCCCeEEEEEcC-CC--eEEEE-ECCCeEEEEecCC--CcEEEEE---cC--CCcceEE
Q 004683 471 GGKISIFSLETFQTLA-TFANPPPIATYFILLP-QD--LFAFG-FDDSSILVHCPCT--KKTKAKL---KG--HQNRITC 538 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~--~l~sg-s~dg~I~vwd~~~--~~~~~~l---~~--~~~~v~~ 538 (737)
.|.|.-||..+.+..+ ++.+.. +.++.+-- ++ .++++ +..-.|.-||... .....++ +. .....+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 5777779987755433 333331 23333322 22 33333 3333455577332 2222321 11 2345666
Q ss_pred EEEeCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE--EecCcE
Q 004683 539 LAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQI 607 (737)
Q Consensus 539 l~~sp~g~~l~s~s~d---------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--~~dg~I 607 (737)
-..+|+|++.+-.-.| |.++.|-... .+..+... - .--+.++|+.+.+.+.. +.+-.|
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~~~-v---~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------QVELIWNC-V---GISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCC-------Cceeeehh-c---cCCccccccccCcEEEEEccCceEE
Confidence 7789999984422222 3344443332 01101110 0 23346888888877765 466677
Q ss_pred EEEe--CCCCce-----eEEecCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccC
Q 004683 608 DVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 678 (737)
Q Consensus 608 ~iwd--~~~~~~-----~~~~~~~~--h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~ 678 (737)
.-|| ..+|.. +..+.... .....-.++...+|.+.++.-..|+|.-.|..+|+.+..+... ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~ 254 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TP 254 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CC
Confidence 6677 555432 22221100 0122334566778888888888899999999999999988754 22
Q ss_pred ceeeEEEEEcc
Q 004683 679 ELYPLVIAAHP 689 (737)
Q Consensus 679 ~v~~~~v~~sp 689 (737)
. +++++|--
T Consensus 255 q--itsccFgG 263 (310)
T KOG4499|consen 255 Q--ITSCCFGG 263 (310)
T ss_pred c--eEEEEecC
Confidence 2 44888864
No 431
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=1.9 Score=46.32 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=65.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEE---------cCCCeeEE--EEec---ccccCCCCccCceeeEEEEEccCC--
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFD---------TSTLELRC--QINL---TAYAQPGTISLELYPLVIAAHPLE-- 691 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd---------~~~~~~~~--~~~~---~~~~~~g~~~~~v~~~~v~~sp~d-- 691 (737)
-.|..+..++.|..++-.|.+|.+.++= ++.|+.+- +..+ ..|.. +..+.+..++|||+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts----s~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS----STSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----CCceeeeeccccCCccC
Confidence 4577888899999999988898665432 23343222 1111 11111 233556799999943
Q ss_pred CCEEEEEECCCcEEEEecCCCceeeeecC-CCCCCCccC
Q 004683 692 PNRIALGLTNGRVHVIEPLESEVEWGKLP-FTDSREFST 729 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~~~w~~~~-~~~~g~~s~ 729 (737)
...|..-+.|.++|||+.......|.+++ +.++|..++
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~S 218 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVS 218 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccce
Confidence 35788888999999999999999998855 555555543
No 432
>PRK10115 protease 2; Provisional
Probab=92.87 E-value=24 Score=41.35 Aligned_cols=239 Identities=8% Similarity=0.001 Sum_probs=113.7
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
-.+..+.+||||++|+.+.+.+--.-++ +.+.|+.+|..+.... ...-..++|+ ++.|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~----------------l~v~d~~tg~~l~~~i----~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG----------------IRFRNLETGNWYPELL----DNVEPSFVWANDSWTF 186 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE----------------EEEEECCCCCCCCccc----cCcceEEEEeeCCCEE
Confidence 4467789999999888876532211111 2345555554332211 1111458888 5555
Q ss_pred EEEe-C------CeEEEEECCCC--cEEEEecCCCCCeE-EEEEcCCC-eEEEEEC---CCeEEEEecC--CCcEEEEEc
Q 004683 467 FSAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGFD---DSSILVHCPC--TKKTKAKLK 530 (737)
Q Consensus 467 ~s~s-d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~s~~~-~l~sgs~---dg~I~vwd~~--~~~~~~~l~ 530 (737)
+... + ..|+.+++.++ +....+........ .+..+.++ .++..+. ++.+.+++.. ++.....+.
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE
Confidence 4443 2 36888899887 44445554333333 33334466 4433332 3478888842 343222222
Q ss_pred CCCcceEEEEEeCCCCEEEEEeCC--Cc--EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ec
Q 004683 531 GHQNRITCLAYSLSLNVLVSSGAD--AQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE 604 (737)
Q Consensus 531 ~~~~~v~~l~~sp~g~~l~s~s~d--g~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~d 604 (737)
........+. +.. ..+...+.. .. |...++.. ...... +...... ..+..+.++ ++.|+. . .+
T Consensus 267 ~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~---l~~~~~~--~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 267 RRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRD--EQQWEE---LIPPREN--IMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred CCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCC--cccCeE---EECCCCC--CEEEEEEEE--CCEEEEEEEeC
Confidence 1122222222 323 333333322 22 33334432 111111 2222111 367778887 445554 3 45
Q ss_pred Cc--EEEEeCCCCceeEEecCCCCCCCeEEEEEc--cCCC-EEEEEec---CCeEEEEEcCCCe
Q 004683 605 GQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE 660 (737)
Q Consensus 605 g~--I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~-~l~sgs~---dg~I~vwd~~~~~ 660 (737)
|. +++++..++ .+..+... ....+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 336 g~~~l~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 336 GLTSLRQINRKTR-EVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEcCCCC-ceEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 54 566665433 33443311 12223334444 4443 4444333 4789999998875
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=92.86 E-value=6 Score=44.13 Aligned_cols=183 Identities=8% Similarity=-0.104 Sum_probs=84.0
Q ss_pred CCEEEEEe-C-----CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC--CeEEEEecCCCcEEEEEcCCC
Q 004683 463 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 463 ~~~l~s~s-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d--g~I~vwd~~~~~~~~~l~~~~ 533 (737)
+..++.|+ + ..+..||..+++....-.-...........-++ ..++|+.+ ..+..||..+++-.. +..-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCC
Confidence 44455555 3 257788887765433221111111111122356 66666653 367888876654321 11111
Q ss_pred cce-EEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEE
Q 004683 534 NRI-TCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 609 (737)
Q Consensus 534 ~~v-~~l~~sp~g~~l~s~s~dg---~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~i 609 (737)
.+. ......-+|+..+.|+.++ .+..||.++..-....+ ++... ... ++ ..-+|+..+.| |.+.+
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~---m~~~r----~~~-~~-~~~~~~IYv~G--G~~e~ 419 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS---TYYPH----YKS-CA-LVFGRRLFLVG--RNAEF 419 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC---CCCcc----ccc-eE-EEECCEEEEEC--CceEE
Confidence 111 1112233677777777653 46788887643222111 11111 111 22 22345544445 45678
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCC
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTL 659 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~ 659 (737)
||.++++-.. +.+..+...-.+++ .-+|+..+.||.+ ..|.+||..++
T Consensus 420 ydp~~~~W~~-~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTL-IDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeE-cCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8887665432 11111111111222 2367777777754 24555555544
No 434
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.3 Score=49.86 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccc--------ccHHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHH
Q 004683 140 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVF--------FDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFS 211 (737)
Q Consensus 140 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~--------~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~ 211 (737)
--|.-+.|+|..|+-.+||-.+|..|-++|.+. .++...+++|+.|+...|+.-.+.-...-...-+.-.|-
T Consensus 113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~ 192 (389)
T KOG0396|consen 113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ 192 (389)
T ss_pred hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence 456778999999999999999999999999876 357888889999998888776642100000011223344
Q ss_pred HHHHHHHHHHHhhcc
Q 004683 212 QIQRQKYLEAVDRQQ 226 (737)
Q Consensus 212 ~l~~q~~lEll~~~~ 226 (737)
+..|.|+||+..++
T Consensus 193 -lRlQefIELi~~~~ 206 (389)
T KOG0396|consen 193 -LRLQEFIELIKVDN 206 (389)
T ss_pred -HHHHHHHHHHHhcc
Confidence 89999999998863
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=19 Score=40.90 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=28.3
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 565 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~ 565 (737)
.+.+..++.||+.++++.-..+|.|.+-+.+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 356788999999999999999999999887763
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.31 E-value=2.1 Score=45.76 Aligned_cols=138 Identities=14% Similarity=0.208 Sum_probs=88.8
Q ss_pred CEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--------eEEEEECCCeEEEEecCC-CcEEEEE--c
Q 004683 464 SHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAKL--K 530 (737)
Q Consensus 464 ~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--------~l~sgs~dg~I~vwd~~~-~~~~~~l--~ 530 (737)
++++.-+ ...++-.|++.|+.+..+..|... -+.|.|+. .-++|-.+..|.-.|.+- |..+... +
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 3444433 467888899999999999877765 46777753 234566677777677653 3222222 1
Q ss_pred C--CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEE
Q 004683 531 G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 608 (737)
Q Consensus 531 ~--~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~ 608 (737)
. ......|..-. ...+++++|..|-|++||.-.- ...+...+-. ..|..+..+.+|+++++.....+.
T Consensus 558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~------rAKtalP~lG---~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK------RAKTALPGLG---DAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred hccccccccccccc-cCceEEEecCCCceeeehhhcc------hhhhcCcccc---cceeeeEeecCCcEEEEeecceEE
Confidence 1 11222333333 3348999999999999996541 1111222222 579999999999999987778888
Q ss_pred EEeCC
Q 004683 609 VYEAP 613 (737)
Q Consensus 609 iwd~~ 613 (737)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88865
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.26 E-value=13 Score=39.18 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=93.1
Q ss_pred cceEEEEEeCCCCEEEEEeCCCc------EEEEeCCCC--ce-----eeceeeeecccCCCC--CCCCeEEEEEecCCCE
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQ------LCVWDAVGW--KK-----LCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIH 598 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~------I~lwdl~~~--~~-----~~~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~ 598 (737)
+.+..+.+.|++..+++.+.+|. +..+++... .. ....++. -..+... .....-++++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCCE
Confidence 56788889876667777787777 665555431 00 0001111 0111000 0013447888888888
Q ss_pred EEEE-ec------CcEEEEeCCCCceeEEecC-------------CCCCCCeEEEEEccCCCEEEEEec-----CC--e-
Q 004683 599 LLSI-HE------GQIDVYEAPTLNHTSQLVP-------------DKMDLPITYATYSCDGKCIYVSCK-----SG--H- 650 (737)
Q Consensus 599 l~~~-~d------g~I~iwd~~~~~~~~~~~~-------------~~h~~~v~~~~~sp~~~~l~sgs~-----dg--~- 650 (737)
+++. .+ ..|+.++.. |+.+..+.. ...+..+-+++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8886 55 678888876 666555421 113567889999999996665543 22 1
Q ss_pred ------EEE--EEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE-----CCCcEEEEecCC
Q 004683 651 ------VKV--FDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-----TNGRVHVIEPLE 711 (737)
Q Consensus 651 ------I~v--wd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-----~Dg~V~iWd~~~ 711 (737)
+++ ||..+ ++....+.......... .....+..+.+-+ ++.+|+-=- ....++|+.+.-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-PGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccc-cCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEEc
Confidence 444 45444 33333332111000000 0123345888888 677666421 234566666643
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=1.8 Score=50.73 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=81.3
Q ss_pred CCeEEEEECCCCcEEE-----Eec------CCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcE-EEEEcCCCcce
Q 004683 471 GGKISIFSLETFQTLA-----TFA------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 536 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~-~~~l~~~~~~v 536 (737)
+..|..||+.+...-. -+. .......++.|.|.- ..+++..|+.|.+..+..... +..+. ....+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence 3478899987532211 111 112345688899887 788888999999887653222 22222 45678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
++++|+|.|+.++.|-..|++.-|-..-... ..+...+... ...|.+++|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e---~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEE---NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCC---CcceeEEEEecceeEEEE
Confidence 9999999999999999999998886554211 1111011111 278999999988888886
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.05 E-value=20 Score=38.71 Aligned_cols=151 Identities=8% Similarity=-0.016 Sum_probs=83.2
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEecCCCcE--EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~--~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~ 572 (737)
..+..++++ .++.+.....++-||- |.. ...-......+.++.+.+++..++++ .+|.+. |....+..-....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 345566777 6655554333334442 222 11112234568899999999877655 456553 3333321100001
Q ss_pred eeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEec-CCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
+......... ..+..+.+.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.|
T Consensus 318 f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 318 FEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred eeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 1211111110 458899999999988889888777664 3444433322 11124568899997776665555 57777
Q ss_pred EEE
Q 004683 652 KVF 654 (737)
Q Consensus 652 ~vw 654 (737)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 554
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.02 E-value=6.4 Score=42.18 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=78.9
Q ss_pred CeEEEEEcCCC-eEEEEE-----------CCC-eEEEEecCC--Cc--EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCc
Q 004683 494 IATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs-----------~dg-~I~vwd~~~--~~--~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~ 556 (737)
....++|.++| .+++-. ..+ .|.+++-.+ |+ ....+...-.....+++.++| .+ +++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeE
Confidence 34578999999 444432 223 677776432 32 223443333456889999988 44 4444443
Q ss_pred EEEEeCCCCcee--eceee-eecccCCCCCCCCeEEEEEecCCCEEEE-Eec-------------------CcEEEEeCC
Q 004683 557 LCVWDAVGWKKL--CSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAP 613 (737)
Q Consensus 557 I~lwdl~~~~~~--~~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d-------------------g~I~iwd~~ 613 (737)
.++.|....... ....+ ..+.............++|.|||.+.++ +.. |.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334455431110 11111 2122210000135778999999987665 411 345555654
Q ss_pred CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
.++. ..+.. + ......++|+|+|+++++-..+
T Consensus 173 g~~~-e~~a~-G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKL-RVVAH-G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeE-EEEec-C-cCCCccceECCCCCEEEEccCC
Confidence 4432 23321 2 3446789999999987764433
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=8.9 Score=36.48 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=97.0
Q ss_pred EEEEe-CCEEEEEe---CCeEEEEECCCCcEEEEecCCCCCeEE--EEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcC
Q 004683 458 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY--FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 531 (737)
Q Consensus 458 ~v~~s-~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~--~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~ 531 (737)
.+.+. |.++.+.+ ...|++||+.+|+.+..-.-....+.. +.-..|...+-.-.+|.-..+|.++-+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 35555 65666666 368999999999887765422222211 111122222334568889999998888776665
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEE
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 610 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iw 610 (737)
..+.=+.+ ..|+..++.++...+++.-|..+...... ++....+..- ..++.+.|- +|...|- =.+..|...
T Consensus 129 y~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~--v~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDT--VQVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceee--ecCCcceEeeCCceEEEecCHHHhhhcce--EEEEECCeec--ccccceeee-ccEEEEeeeeecceEEE
Confidence 23333443 34566677776666777777665322111 1111111100 122223332 3433332 255566666
Q ss_pred eCCCCceeEEecCC----------CCCCCeEEEEEccCC-CEEEEE
Q 004683 611 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 645 (737)
Q Consensus 611 d~~~~~~~~~~~~~----------~h~~~v~~~~~sp~~-~~l~sg 645 (737)
|..+|+.+..+... .+....+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777766554321 134567788888876 555554
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=91.90 E-value=10 Score=42.33 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=48.0
Q ss_pred CCEEEEEe-C---CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE--EEcCCCcc
Q 004683 463 GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNR 535 (737)
Q Consensus 463 ~~~l~s~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~--~l~~~~~~ 535 (737)
|+..+.|| + ..+..||..+.+....-.-........+..-+| ..+.| |.+.+||.++++-.. .+......
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence 66667776 4 357789887654433211111111112223356 55555 357789987764322 11111111
Q ss_pred eEEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q 004683 536 ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVG 564 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~d-----g~I~lwdl~~ 564 (737)
. +++ .-+|+..++|+.+ .+|..||..+
T Consensus 440 ~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 440 P-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred c-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 1 222 2366777777754 3466677665
No 443
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.83 E-value=8.8 Score=42.69 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=74.1
Q ss_pred EEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCC-CCeEEEEEccCCCEEEEEec-------------CCeEEEEE
Q 004683 590 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 655 (737)
Q Consensus 590 l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~sgs~-------------dg~I~vwd 655 (737)
+...++|.+++.+. +.+..+|+ .|+.+..+...... ..=..+..-|+|++|+.+.. ...|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888777544 88888888 57766665442210 01135677799999988772 23477778
Q ss_pred cCCCeeEEEEecccccC-----------------CCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 656 TSTLELRCQINLTAYAQ-----------------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~-----------------~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
.+|+.+..+....... .+.......+.++.+.|.++.+++|+-.-..|...|..+++-.|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8999988876543321 1122344557899999966666666665668999999999999988
Q ss_pred cCC
Q 004683 719 LPF 721 (737)
Q Consensus 719 ~~~ 721 (737)
.++
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 664
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.26 E-value=4.1 Score=45.55 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=84.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc----
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---- 422 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~---- 422 (737)
..|.|+.++.++.||.++++++........|.. ..+-..+.|...| |+++.+|..+.-|.-..-..
T Consensus 22 shp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 22 SHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred ecCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheeeccCcchhhcc
Confidence 459999999999999999999875321222221 2333456666666 66777787887786443111
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCC
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANPPPI 494 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~ 494 (737)
...+....++.++.|+....++.++ -+.|..+... .+.+-..- -..|.+-|+.++..........-.
T Consensus 92 yndqsekefss~~cdptaqnvvgtl-----cggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~a 166 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNVVGTL-----CGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLA 166 (1636)
T ss_pred ccchhhhhccceecCchhhhhhhhh-----ccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcc
Confidence 1112222233344454444333321 1233322222 12222222 456777777666554443322223
Q ss_pred eEEEEEcCCCeEEEEECCCeEEEEecCCCc
Q 004683 495 ATYFILLPQDLFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 495 v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~ 524 (737)
|..+.+-.....+.+....+|.+=|+++.+
T Consensus 167 idelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 167 IDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred hhhhhhccccceEEeeccccEEEeecccch
Confidence 333333323344455556678888877654
No 445
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.17 E-value=1.1 Score=43.91 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=53.0
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeece-eeeeccc-------CCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 612 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~-~~~~~~~-------~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~ 612 (737)
+..++.++++.+.+|.+++||+.+.+..... .+..+.. ... ..|..+.++.+|.-+++-.+|..+.||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4557889999999999999999986543322 2222222 122 6788999999998888767788999988
Q ss_pred CCCcee
Q 004683 613 PTLNHT 618 (737)
Q Consensus 613 ~~~~~~ 618 (737)
.-+.-+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 644433
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.11 E-value=24 Score=37.75 Aligned_cols=198 Identities=11% Similarity=-0.050 Sum_probs=108.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCC--CCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCC-cceEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 538 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~-~~v~~ 538 (737)
+..+..+. +|.|.-.|..++..+.....-. ..+.+-.+..+|.++.++.++.++.+|..+|+.+....... -.+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44444444 8989999998888665433221 22222223336688899999999999998898887776544 11112
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe--cCcEEEEeCCCCc
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 616 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~--dg~I~iwd~~~~~ 616 (737)
-..-.++ .+..++.++.+...|..+++.........- .. ..+..-....++..++... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 2222233 344444678888888887654333222100 00 1111111123333333333 5567777787777
Q ss_pred eeEEecCCCC--CCCe--E-EEEEcc--CCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 617 HTSQLVPDKM--DLPI--T-YATYSC--DGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 617 ~~~~~~~~~h--~~~v--~-~~~~sp--~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.......... ...+ . .+...+ .+.-++.++.++.+...+..+|+.++.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 6655321100 1111 0 111000 122346777888899999999999998875
No 447
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.72 E-value=24 Score=39.26 Aligned_cols=153 Identities=18% Similarity=0.077 Sum_probs=76.1
Q ss_pred eEEEE---ECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 505 LFAFG---FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 505 ~l~sg---s~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
+++.+ ...+...++|.. |..+..+.........+...++|.+++... +.++.+|+... ...... ++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~---l~~~~~ 189 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYD---LPGGYY 189 (477)
T ss_dssp EEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE
T ss_pred EEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeee---cCCccc
Confidence 44444 344566667743 555555443222222266778898776555 78888888752 222211 222100
Q ss_pred CCCCCeEEEEEecCCCEEEEEe--------------cCcEEEEeCCCCceeEEecCCCC---------------------
Q 004683 582 PETTIVNHIQFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM--------------------- 626 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~--------------dg~I~iwd~~~~~~~~~~~~~~h--------------------- 626 (737)
..-..+..-|+|++|+.+. ...|..+| .+|+.+..+....|
T Consensus 190 ---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 190 ---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp ----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ---ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 0123577788898887643 22466666 67776665432111
Q ss_pred ----CCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecc
Q 004683 627 ----DLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 668 (737)
Q Consensus 627 ----~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 668 (737)
=..+.++.+.+ ++.+++++-.-..|...|..+++..+.+..+
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 02478899988 5555555555568999999999999888754
No 448
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=90.71 E-value=0.22 Score=46.47 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=78.7
Q ss_pred hhheeehhhhhh---HhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh--ccccccccc--cccCCC-----Cchh
Q 004683 26 KMFFELRKHKYC---EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL--ALKDLRENE--QLSGYT-----NATS 93 (737)
Q Consensus 26 ~~~~~~~~~~~~---e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-----~~~~ 93 (737)
...|.|+|..=. +.+-=|...|+--|=.|++|+|...++ ..|++|| .++|=...+ .++... ...+
T Consensus 43 ~~QyiiLkL~~paiV~sItFGKy~K~HvCNlK~fkv~gG~~~---~~m~ell~~gLkND~~~Etf~l~~~~~~~~~~~fP 119 (199)
T PF06588_consen 43 PPQYIILKLESPAIVKSITFGKYEKPHVCNLKKFKVYGGMDE---ENMIELLHGGLKNDSNPETFNLKHKTNNGIENYFP 119 (199)
T ss_pred CCcEEEEEcCCCeEEEEEeccccccCccccceeeEEeccCCH---HHHHHHHhhhccCCCCCceEEeEEecCCcccceee
Confidence 566666664422 233335556666676788888884433 5688888 222212213 222221 1123
Q ss_pred hHHHHHHHHHHHHhhccc---------cccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhhhHHHHHH
Q 004683 94 SRAKLIDSLKLLVKENRI---------LQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHK 164 (737)
Q Consensus 94 ~r~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~ 164 (737)
.|-+.++=|..- .|. |+|.. .|. +++-++-+++...-.|++||++.+|+..||..++.+
T Consensus 120 ~rYIKIvPL~sw---GpsFNfSIWyVeL~Gi~-----dp~----~v~~~~~~~~~~re~eaiRlcLKHlRq~~y~~aFes 187 (199)
T PF06588_consen 120 CRYIKIVPLQSW---GPSFNFSIWYVELSGID-----DPD----IVQPCLQWYNKYREKEAIRLCLKHLRQRGYLEAFES 187 (199)
T ss_pred eeeeEEechhhc---CCCCceEEEEEEEeccC-----CHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHH
Confidence 333332222221 222 22444 333 344434467778889999999999999999999999
Q ss_pred HHhhcccccc
Q 004683 165 LEQETRVFFD 174 (737)
Q Consensus 165 L~~Es~i~~~ 174 (737)
||+.+++.++
T Consensus 188 Lqk~t~v~LE 197 (199)
T PF06588_consen 188 LQKQTGVQLE 197 (199)
T ss_pred HHHHcCCCCC
Confidence 9999999774
No 449
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.32 E-value=0.048 Score=57.49 Aligned_cols=239 Identities=14% Similarity=0.118 Sum_probs=131.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
........|-|.+.-++.++.+..+..||-..... ... ..+.....++|. +..
T Consensus 34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~------le~-------------------n~tg~aldm~wDkegdv 88 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI------LEL-------------------NPTGKALDMAWDKEGDV 88 (615)
T ss_pred ccccceeeEecCCCceehhhhhhHHHhhhhhccee------ccc-------------------CCchhHhhhhhccccch
Confidence 33444566777777788888888888887442111 000 133444567777 555
Q ss_pred EEEEe--CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEE
Q 004683 466 LFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 466 l~s~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~ 541 (737)
++... .+.+.+||+.+... +.+. +....-.-+.|++.+ .++.|...|.+.+++..+.+.+-....|...+.+++|
T Consensus 89 lavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 44443 79999999975432 1121 212222236788888 8999999999999998877766666558999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC---eEEEEEecCCCEEEEEecCcEEEE--eCC--C
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---VNHIQFHPDQIHLLSIHEGQIDVY--EAP--T 614 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~sp~g~~l~~~~dg~I~iw--d~~--~ 614 (737)
.+.+ +.+.++.|..+.+-...+ ...+....+..+.... +.-=.|...|..+..-..|.+++. .+. .
T Consensus 168 ~lEd-~vil~dcd~~L~v~~qeg------eta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D 240 (615)
T KOG2247|consen 168 TLED-YVILCDCDNTLSVTTQEG------ETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELD 240 (615)
T ss_pred cccc-eeeecCcHHHHHHhhhcc------ceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCC
Confidence 9977 455566666554433322 1111011110000000 111123344444444222332221 111 1
Q ss_pred CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 615 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 615 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
+..--.+.. ..+.+.++.|--||. +..|.+-|.|..-...++++.
T Consensus 241 ~pval~fq~--~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 241 EPVALQFQE--KYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELG 285 (615)
T ss_pred CccceEeee--cCCceeEEEEecccc-ccccccceeEEEEeccchHHH
Confidence 111113332 256788888877764 444555566666666666543
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.21 E-value=24 Score=36.24 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=89.3
Q ss_pred eEEEEECCCCcEEEEecCC------CCCeEEEEEcC--C----Ce-EEEEECCCeEEEEecCCCcEEEEEcCCC------
Q 004683 473 KISIFSLETFQTLATFANP------PPIATYFILLP--Q----DL-FAFGFDDSSILVHCPCTKKTKAKLKGHQ------ 533 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~--~----~~-l~sgs~dg~I~vwd~~~~~~~~~l~~~~------ 533 (737)
.|.+||+.+++.++++.-+ .+....+.+.. . ++ .++-+..+.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778999999988887522 33456666654 1 33 3344445689999999987766554321
Q ss_pred -------------cceEEEEEeC---CCCEEEEEeCCCcEEEEeCCCC-----ceeece----eeeecccCCCCCCCCeE
Q 004683 534 -------------NRITCLAYSL---SLNVLVSSGADAQLCVWDAVGW-----KKLCSK----FLHSFQTGLVPETTIVN 588 (737)
Q Consensus 534 -------------~~v~~l~~sp---~g~~l~s~s~dg~I~lwdl~~~-----~~~~~~----~~~~~~~~~~~~~~~v~ 588 (737)
..+..++.+| +|+.|.-....+. ++|.+.+. ...... .++.+ +..+ ....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec--cccC--CCCc
Confidence 2245555554 5555555543322 23333221 000000 11111 1110 2456
Q ss_pred EEEEecCCCEEEEE-ecCcEEEEeCCCC---ceeEEecCCCC-CCCeEEEEEcc--CCCEEEEE
Q 004683 589 HIQFHPDQIHLLSI-HEGQIDVYEAPTL---NHTSQLVPDKM-DLPITYATYSC--DGKCIYVS 645 (737)
Q Consensus 589 ~l~~sp~g~~l~~~-~dg~I~iwd~~~~---~~~~~~~~~~h-~~~v~~~~~sp--~~~~l~sg 645 (737)
.++++++|...++- ..+.|..|+..+. +....+..... -..+.++.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 78899999888874 8899999998751 11222222122 45678888888 65544443
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.99 E-value=24 Score=35.88 Aligned_cols=205 Identities=12% Similarity=0.098 Sum_probs=115.3
Q ss_pred eEEEEEe-CCEEEEEe--CCeEEEEECC------CC-cEEEEecC-----CCCCeEEEEEcCC-----------C--eEE
Q 004683 456 ISCFALR-GSHLFSAS--GGKISIFSLE------TF-QTLATFAN-----PPPIATYFILLPQ-----------D--LFA 507 (737)
Q Consensus 456 V~~v~~s-~~~l~s~s--dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~s~~-----------~--~l~ 507 (737)
-+.++++ +..+..+. -+...+||.. .. ..+-++.. .....+.+.|+.. + .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578888 44444443 5889999986 12 22333331 1224555666532 1 478
Q ss_pred EEECCCeEEEEecCCCcE-----EEEEc-CCCcce-EEEEEeC--CCCEEEE-EeCCCcEEEEeCCCCceee--ceeeee
Q 004683 508 FGFDDSSILVHCPCTKKT-----KAKLK-GHQNRI-TCLAYSL--SLNVLVS-SGADAQLCVWDAVGWKKLC--SKFLHS 575 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~~~-----~~~l~-~~~~~v-~~l~~sp--~g~~l~s-~s~dg~I~lwdl~~~~~~~--~~~~~~ 575 (737)
.+++||+|.-|...-+.. ...+. ...+.| ..+++.. .+.+|.. --..++|.+||-.-..... ...-..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998543222 12222 112233 3445543 3444443 3457889999865311100 000001
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-E-------------ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc----
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---- 637 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~-------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp---- 637 (737)
++.+..+ ..|..+ .++..++ . .-|.|-+||. .|..++++.....-...+.++..|
T Consensus 185 iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 185 LPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 2222211 222211 1233322 2 2357999999 688888886655566677787754
Q ss_pred --CCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 638 --DGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 638 --~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.|.+|+---.||+|..||..+|+.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 567888777799999999999988877753
No 452
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.65 E-value=8 Score=43.83 Aligned_cols=131 Identities=9% Similarity=0.083 Sum_probs=70.9
Q ss_pred EEEEcCCC-eEEEEECC----CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCc
Q 004683 497 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK 566 (737)
Q Consensus 497 ~~~~s~~~-~l~sgs~d----g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~ 566 (737)
-+.|.-|. +.+++... ..+++|.. .|+.-..-...++.-..++|-|+|..+++-..|| .|.++..+.-+
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 45565555 55555432 24666652 2332221122233344689999999999987665 35555544310
Q ss_pred eeecee-eeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 567 KLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 567 ~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
.+.. ++ .+.. ..+...+|+-....++++..+.|.+|-..+....-.... .-..+.-+.|+|.
T Consensus 285 --HGef~lr---~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~--~ip~~s~vkwhpe 347 (1243)
T COG5290 285 --HGEFDLR---VGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVER--QIPGISYVKWHPE 347 (1243)
T ss_pred --cCCcccc---CCch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEee--cCCCcceeeeccc
Confidence 0111 11 1111 356677888777777777888999998766443222111 2334555677773
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.04 E-value=20 Score=41.20 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=70.6
Q ss_pred CeEEEEEecCC--CEEEEE-ecCcEEEEeCCC-------C-------------ceeEEecCCCCCCCeEEEEEc--cCCC
Q 004683 586 IVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPT-------L-------------NHTSQLVPDKMDLPITYATYS--CDGK 640 (737)
Q Consensus 586 ~v~~l~~sp~g--~~l~~~-~dg~I~iwd~~~-------~-------------~~~~~~~~~~h~~~v~~~~~s--p~~~ 640 (737)
.|+.|....=| ..|+++ .||.|.+|.+++ . ++...+. -...+++++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcce
Confidence 46666554433 445554 889999997531 1 0111121 25678999998 7888
Q ss_pred EEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC--CC---EEEEEECCCcEEEEec
Q 004683 641 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE--PN---RIALGLTNGRVHVIEP 709 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d--~~---~las~s~Dg~V~iWd~ 709 (737)
+||+++....|.||-............ ...+.+.|. +|+|-+.+ +. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~-----s~~~~hNIP--~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVP-----SHQHSHNIP--NVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEecccccccccc-----ccccccCCC--eeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999888888887654311111100 001133444 88888743 22 7888999999999888
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.04 E-value=9 Score=40.36 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=60.1
Q ss_pred CeEEEEEecCCCEEEEEecCcEEEEeCCCCce---eEEec--CCCCCCCeEEEEEccC---CCEEEEEec-C--------
Q 004683 586 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIYVSCK-S-------- 648 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~---~~~~~--~~~h~~~v~~~~~sp~---~~~l~sgs~-d-------- 648 (737)
..+.|+|.|+|+.+++-..|.|++++ ..+.. +.... ..........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46799999999998887899999999 34443 22221 1123567899999994 344443332 1
Q ss_pred CeEEEEEcCCC--ee---EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCc
Q 004683 649 GHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 703 (737)
Q Consensus 649 g~I~vwd~~~~--~~---~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 703 (737)
..|.-|....+ .. ...+........+ .+... .++|.| |+.++++.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~--~H~g~--~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSG--NHNGG--GLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSS--SS-EE--EEEE-T-TSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCC--CCCCc--cccCCC-CCcEEEEeCCCCC
Confidence 24544555443 11 1111111110111 22223 799999 7887777765543
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=88.91 E-value=34 Score=36.08 Aligned_cols=154 Identities=6% Similarity=-0.053 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEE-EecCCCcEEEEE-cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 568 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~v-wd~~~~~~~~~l-~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~ 568 (737)
...+.++.+.|++ .++++. .|.+.. +| ..++.-... ..-...++++.+.++++.++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 4567889999988 665554 565543 22 222222222 2335678899999999877665 457664322333211
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEEEEec
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
...+. .+.... ...+..+.+.|++..++++.+|.|.. ....++.-..... ..-....+.+.|..+++.++ .+.
T Consensus 248 -W~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 248 -WSKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred -ccccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 11111 110100 03578899999988888888886653 4444444333321 11134577888876666655 456
Q ss_pred CCeEEEEE
Q 004683 648 SGHVKVFD 655 (737)
Q Consensus 648 dg~I~vwd 655 (737)
.|.|.-|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887665
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.89 E-value=0.058 Score=56.92 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=96.9
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCC
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT 614 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~ 614 (737)
-...|-|.+.-++.++.+..+..||-... ..+. ...+ +....++|..+|..+++ . ..+.+.+||+.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le----~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE----LNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-----eecc----cCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 34567887777888999999999987651 1111 1111 45668899998888776 4 779999999975
Q ss_pred CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 615 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 615 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
....+.-.+..+.... +.|++.+..++.|...|.+.|++..+.+...+. |.+. -.+++.+|.+ . ++
T Consensus 107 eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------Gkh~--RRgtq~av~l-E-d~ 172 (615)
T KOG2247|consen 107 EYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------GKHQ--RRGTQIAVTL-E-DY 172 (615)
T ss_pred hhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------cccc--cceeEEEecc-c-ce
Confidence 4322111111223333 789999999999999999999998887665554 3112 2345889988 3 57
Q ss_pred EEEEECCCcEEE
Q 004683 695 IALGLTNGRVHV 706 (737)
Q Consensus 695 las~s~Dg~V~i 706 (737)
.+.++.|..+.+
T Consensus 173 vil~dcd~~L~v 184 (615)
T KOG2247|consen 173 VILCDCDNTLSV 184 (615)
T ss_pred eeecCcHHHHHH
Confidence 777776654433
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=39 Score=36.81 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=48.3
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEe---------cCCCcEEE---EE-------c-CCCcceEEEEEeCCC---CEEE
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHC---------PCTKKTKA---KL-------K-GHQNRITCLAYSLSL---NVLV 549 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd---------~~~~~~~~---~l-------~-~~~~~v~~l~~sp~g---~~l~ 549 (737)
.|..+..++.| .++-.+.+|.+.++= ++.|+... ++ . ...-.+..++|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 45677889999 888888888665543 22343221 11 1 112245678999975 5788
Q ss_pred EEeCCCcEEEEeCCCC
Q 004683 550 SSGADAQLCVWDAVGW 565 (737)
Q Consensus 550 s~s~dg~I~lwdl~~~ 565 (737)
.-+.|+.||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8888999999999873
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.85 E-value=38 Score=36.58 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCC
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 615 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~ 615 (737)
...+..+++|.+++.+.....++-||--... ..++. .... ..+..+.+.+++..++++..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~-~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHN-RASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEec-CCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence 3445667777766666544333444432200 01111 1111 5788999999999998887777654 33344
Q ss_pred c-----eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 616 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 616 ~-----~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
. .............+.++.|.+++..+++| ..|.+.... ..|+.-...... .......+ .+.|.+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~-----~~~~~~ly--~v~f~~- 380 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGA-----DNIAANLY--SVKFFD- 380 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEcccc-----CCCCccee--EEEEcC-
Confidence 3 12222111113458899998887766555 567766553 344332221100 00022355 888877
Q ss_pred CCCEEEEEECCCcEEEE
Q 004683 691 EPNRIALGLTNGRVHVI 707 (737)
Q Consensus 691 d~~~las~s~Dg~V~iW 707 (737)
+++.+++| .+|.|.-|
T Consensus 381 ~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCceEEEe-CCcEEEEe
Confidence 45555554 77876554
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.84 E-value=16 Score=32.30 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=66.8
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCC--------cEEEEEcCCCcceEEEEEeC-----CCCEEEEEeCCCcEEEEeCCC
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~--------~~~~~l~~~~~~v~~l~~sp-----~g~~l~s~s~dg~I~lwdl~~ 564 (737)
.|.... .|++++.-|.|.|++.... ..+..+. -...|++++-.+ +...|+.|+ ...+-.||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 444444 7888888899999986633 2334443 345677776544 234555555 56888999987
Q ss_pred CceeeceeeeecccCCCCCCCCeEEEEEec----CCCEEEEEecCcEEEEeCCCCceeEE
Q 004683 565 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~~~~dg~I~iwd~~~~~~~~~ 620 (737)
......+.+. ..|.++.+.. ....+++|.+..|.-||..-.+...+
T Consensus 83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 4332222222 4577777643 23455667888888888754444433
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.79 E-value=23 Score=34.11 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=80.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e--cC---cEEEE---eCC--
Q 004683 546 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EG---QIDVY---EAP-- 613 (737)
Q Consensus 546 ~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~--dg---~I~iw---d~~-- 613 (737)
..+..+.....|.+|++..... ..+.++..- +.|..+.++..|+++++- . .. .+|+| ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~---~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC---PLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC---ceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4454446677899999984322 223323332 689999999999999983 2 22 45654 222
Q ss_pred CCceeE-EecCC-------------------CCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCee-EEEEeccccc
Q 004683 614 TLNHTS-QLVPD-------------------KMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYA 671 (737)
Q Consensus 614 ~~~~~~-~~~~~-------------------~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~ 671 (737)
...++. .+.++ +-..++.+++..| .|+++ .|+ ++++.+|.+..... ...+....+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEech
Confidence 112222 11110 0134566777777 45544 444 47889998875543 2111111110
Q ss_pred CC--CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 672 QP--GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 672 ~~--g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
.. -| .....+..+++.. .++|..+ +-.+++..+.
T Consensus 179 ~~l~~~-~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 179 RSLIDH-IDNFKPTQVAICE---GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred hhhhhe-ecCceEEEEEEEe---eEEEEec-CCEEEEEEEe
Confidence 00 11 1224455777754 5787775 4467777653
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.24 E-value=18 Score=32.05 Aligned_cols=117 Identities=7% Similarity=-0.004 Sum_probs=71.9
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCcee---eceeeeecccCCCCCCCCeEEEEEec-----CCCEEEEEecCcEEEEe
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 611 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~sp-----~g~~l~~~~dg~I~iwd 611 (737)
.|......|++++.-|.|.|++....... ....+..+.-. ..|++++-.+ +...|+.+....+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 45555567888888899999987642211 11122212222 4677776554 24667779999999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEcc----CCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
+....-+..-.. ...|.++.+.. +..++++| .+..|.-||....+..+..
T Consensus 80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhC---ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 987665433222 45577777642 33445554 4678888887776665554
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.02 E-value=16 Score=35.18 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred EEEEecCCCEEEEEecCcEEEEeCC--CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---C---eEEEE---EcC
Q 004683 589 HIQFHPDQIHLLSIHEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---G---HVKVF---DTS 657 (737)
Q Consensus 589 ~l~~sp~g~~l~~~~dg~I~iwd~~--~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g---~I~vw---d~~ 657 (737)
.++-++.+..+++...+.|.+|++. ..+++.++.. -+.|..+.++..|++|++-=++ . .+|+| +..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 4444433344444677789999987 3455666654 5789999999999999985432 2 55664 332
Q ss_pred --CCeeEE-EEecccccCCCCccC-----------ceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 658 --TLELRC-QINLTAYAQPGTISL-----------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 658 --~~~~~~-~~~~~~~~~~g~~~~-----------~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
...++. ++.+|...+...... ...+.+++..|..|++++.+ ++++.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 222222 333322211110000 01145788888667666554 568999988643
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.65 E-value=20 Score=39.28 Aligned_cols=113 Identities=14% Similarity=0.038 Sum_probs=61.4
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC-CCCCCCCeEEEEEecCC------CEEEEE--e
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI--H 603 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g------~~l~~~--~ 603 (737)
-...+.++|.|||+++++--..|.|++++..++.......+..+... .. .....|+++|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEec
Confidence 34578899999998777665569999998655322111111111111 11 678899999884 345443 1
Q ss_pred ---------cCcEEEEeCCCC-------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 604 ---------EGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 604 ---------dg~I~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
...|.-|.+... +.+..-.+......-..+.|.|||.+.++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223555554321 111111111112234478899999877765544
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=21 Score=34.16 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=91.4
Q ss_pred eEEEEECC--CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 505 LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 505 ~l~sgs~d--g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
.+.+.+.- ..|++||+.+|+.+.+-.-....+..=-...-|..+. ..-.+|.-..+|.++-+........
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~------- 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE------- 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-------
Confidence 44444433 3799999999987755432211111100111122222 2335777788888873322211111
Q ss_pred CCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCC---eEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 582 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP---ITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+.=+.+ ..|++.|..+ ....++.-|.++.....++.......+ ++.+.| -+|...|-.-.+..|-..+..
T Consensus 131 ---GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 ---GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ---Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 222333 3455555554 445666666655443333221111222 333444 356555555556677777888
Q ss_pred CCeeEEEEecccccC----CCCccCceeeEEEEEccCCCCEEEEE
Q 004683 658 TLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~----~g~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
+|+.+..+..+.... .+.+.... ..+++.|..+++++||
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvl--NGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVL--NGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccc--cceeecCcCCeEEEec
Confidence 999888776543321 12122222 4899999555677776
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.45 E-value=0.47 Score=53.91 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=68.4
Q ss_pred CCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEE-----------EecCCCEEEEEECCCcEEEee
Q 004683 348 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI-----------YSHSGDFLVALTQTATHKLWK 416 (737)
Q Consensus 348 spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~-----------fspdg~~L~s~s~dg~i~iWd 416 (737)
.++.-++-.+-+++++++-+++.. . +.+ +.+ |...+..++ .||||+.++.++.||.++.|.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra----~-~~l-~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRA----L-RSL-FRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccceeeeccCCCceeEeeechH----H-HHH-HHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344556667777888766555421 1 111 333 666555544 589999999999999999887
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe--CCeEEEEECCCCcEE
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTL 485 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s--dg~i~vwd~~~~~~~ 485 (737)
+.- .|...... ...|.+.++....-.. +|+..+..+... -.++++++ +..+++|.....+|.
T Consensus 264 iyi----~g~~~~rc-lhewkphd~~p~vC~l--c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYI----TGKIVHRC-LHEWKPHDKHPRVCWL--CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eee----eccccHhh-hhccCCCCCCCceeee--eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 552 22222211 1345554432211111 233333333333 34566666 467999998777765
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.15 E-value=21 Score=41.05 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=86.2
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEE------Eec----------------CCCCCeEEEEEcCCC---eEEEEECCCeEEE
Q 004683 463 GSHLFSASGGKISIFSLETFQTLA------TFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 517 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~------~~~----------------~~~~~v~~~~~s~~~---~l~sgs~dg~I~v 517 (737)
.++++.+..+.|.||+...-.... .+. .....|+.+....=| .|+.|..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 677888889999999985422211 110 011235555444333 7889999999999
Q ss_pred EecCC-------C----c---------EEEEEcCCCcceEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004683 518 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 518 wd~~~-------~----~---------~~~~l~~~~~~v~~l~~s--p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
|.+++ . . +-..+. -...+++++++ ...+++|+++....|.||-....... ......
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-cccccc
Confidence 96531 0 0 111122 24578899998 77888888888888888865442100 000001
Q ss_pred cccCCCCCCCCeEEEEEecCC-----C-EEEE-EecCcEEEEeC
Q 004683 576 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 612 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g-----~-~l~~-~~dg~I~iwd~ 612 (737)
.... ..|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1222 468899997754 2 4444 57898888877
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.10 E-value=43 Score=35.23 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=115.3
Q ss_pred eEEEEEe--CCEEEEEeCCeEEEEECCCCcE---EEEe----cCCCCCeEEEEEcCC----CeEE-EEECC--------C
Q 004683 456 ISCFALR--GSHLFSASGGKISIFSLETFQT---LATF----ANPPPIATYFILLPQ----DLFA-FGFDD--------S 513 (737)
Q Consensus 456 V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~s~~----~~l~-sgs~d--------g 513 (737)
.++|+|. |+++++-..|.|++++ ..+.. +..+ .........++++|+ +.|. +.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5678888 6666654489999999 44443 2233 133456789999995 4333 22211 2
Q ss_pred eEEEEecCCC--c-----E-EEEEc---CCCcceEEEEEeCCCCEEEEEeCCCc-------------EEEEeCCCCceee
Q 004683 514 SILVHCPCTK--K-----T-KAKLK---GHQNRITCLAYSLSLNVLVSSGADAQ-------------LCVWDAVGWKKLC 569 (737)
Q Consensus 514 ~I~vwd~~~~--~-----~-~~~l~---~~~~~v~~l~~sp~g~~l~s~s~dg~-------------I~lwdl~~~~~~~ 569 (737)
.|.-|....+ . . +..+. ...+....++|.|||.+.++.+..+. |.-.+... ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 4444444333 1 1 11112 13345677999999977666654332 22223221 0000
Q ss_pred cee--------eeecccCCCCCCCCeEEEEEecC-CCEEEE--EecC--cEEEEeCCCCc--------------------
Q 004683 570 SKF--------LHSFQTGLVPETTIVNHIQFHPD-QIHLLS--IHEG--QIDVYEAPTLN-------------------- 616 (737)
Q Consensus 570 ~~~--------~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~--~~dg--~I~iwd~~~~~-------------------- 616 (737)
..+ ...+-.++ .....++|+|. |.+.++ +.++ .|.+. ..|.
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcccc
Confidence 000 00011222 34668999999 777766 4443 23332 2111
Q ss_pred ---------eeEEecCCCCCCCeEEEEEcc-------CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 617 ---------HTSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 617 ---------~~~~~~~~~h~~~v~~~~~sp-------~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
++..+. +...+..+.|-. .|.++++.-..+.|....+..+..+..... +. + ....
T Consensus 236 ~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~--~--~~~~ 306 (331)
T PF07995_consen 236 APSCPGFVPPVFAYP---PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL--G--GFGG 306 (331)
T ss_dssp GSS-TTS---SEEET---TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC--T--TSSS
T ss_pred ccCCCCcCccceeec---CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc--c--cCCC
Confidence 111221 235667777753 455666666667888888775533222111 00 1 1122
Q ss_pred eeEEEEEccCCCCEEEEEECCCcEE
Q 004683 681 YPLVIAAHPLEPNRIALGLTNGRVH 705 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~Dg~V~ 705 (737)
.+..+++.| ||.++++-+.+|.|.
T Consensus 307 r~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 307 RPRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred CceEEEEcC-CCeEEEEECCCCeEe
Confidence 355999999 898888888888764
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=32 Score=41.71 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=89.1
Q ss_pred EECCCeEEEEecCCCcEEEEEcCCCcceEEEEE-eC-------CCCEEEEEeCCCcEEEEeCCCCceeece-ee---eec
Q 004683 509 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY-SL-------SLNVLVSSGADAQLCVWDAVGWKKLCSK-FL---HSF 576 (737)
Q Consensus 509 gs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~-sp-------~g~~l~s~s~dg~I~lwdl~~~~~~~~~-~~---~~~ 576 (737)
.+-|..+.+|+.+++.....+.+..+.|..+.. -| .=++++..+.--.|.++-+.-.+..... .. .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 355889999999997777777776666666544 22 2234444444445555543221110000 00 001
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC--CCC---c-ee----------------EEecCCCCCCCeEEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA--PTL---N-HT----------------SQLVPDKMDLPITYAT 634 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~--~~~---~-~~----------------~~~~~~~h~~~v~~~~ 634 (737)
.. .+ ..|.++....+|+.+.+|.||.|+=.-. ..+ + +. ..+. ..+..+|..++
T Consensus 175 ~~--dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 175 SV--DG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQIT 249 (1311)
T ss_pred ec--CC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeE
Confidence 11 11 5788999899999999999985543221 111 1 10 0111 13467899999
Q ss_pred EccCCCEEEEEecCCeEEEEEcCC
Q 004683 635 YSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 635 ~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.....+.+++-++.|+|.+|++..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998889999999999999999986
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.06 E-value=0.87 Score=51.86 Aligned_cols=162 Identities=9% Similarity=0.078 Sum_probs=92.3
Q ss_pred CCCCCeEEEEEe-CC--EEEEEe-CCeEEEEECC--CCcEEEE-----ecCCCCCeEEEEEcC---CC-eEEEEECCCeE
Q 004683 451 DPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQTLAT-----FANPPPIATYFILLP---QD-LFAFGFDDSSI 515 (737)
Q Consensus 451 ~h~~~V~~v~~s-~~--~l~s~s-dg~i~vwd~~--~~~~~~~-----~~~~~~~v~~~~~s~---~~-~l~sgs~dg~I 515 (737)
+..+.|-.++|- .+ .+. - -|...||+++ .|+.... .......+.-+.|+| +. ++..+..++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 566777777776 11 111 2 3778888875 3443222 223333445566665 44 77788888888
Q ss_pred EEEecCCCcEEEEEcCCCcceEEE-----------EEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCC
Q 004683 516 LVHCPCTKKTKAKLKGHQNRITCL-----------AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 584 (737)
Q Consensus 516 ~vwd~~~~~~~~~l~~~~~~v~~l-----------~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
++.+..+... ..+.+|...+..+ ..+|||+.++.++.||.+++|.+.-......++++ ..+.|+.+
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~~- 284 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDKH- 284 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCCC-
Confidence 8877654322 3344565544433 35899999999999999999987543222233444 22333310
Q ss_pred CCeEEEEEecC-------CCE--EEEE--ecCcEEEEeCCCCcee
Q 004683 585 TIVNHIQFHPD-------QIH--LLSI--HEGQIDVYEAPTLNHT 618 (737)
Q Consensus 585 ~~v~~l~~sp~-------g~~--l~~~--~dg~I~iwd~~~~~~~ 618 (737)
..|..+ ++.+ +.+ ++++ .+..+++|.....+|.
T Consensus 285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 122222 3332 222 3333 3457889987777665
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.93 E-value=4.1 Score=39.95 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=48.8
Q ss_pred EccCCCEEEEEecCCeEEEEEcCCCeeEEEEe-cccccCC----CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 635 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN-LTAYAQP----GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 635 ~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~~~----g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
+..++++|++-+.+|.+++||+.+++.+..-. ....... +. .....+..+..+. +|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~-~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK-SSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC-CCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 45678999999999999999999987654431 1111110 00 1123345777776 677777664 578899988
Q ss_pred CCC
Q 004683 710 LES 712 (737)
Q Consensus 710 ~~~ 712 (737)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 471
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.08 E-value=48 Score=33.85 Aligned_cols=209 Identities=12% Similarity=0.135 Sum_probs=111.4
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecC------CC-cEEEEEcC-----CCcceEEEEEeCCCC------------EE
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPC------TK-KTKAKLKG-----HQNRITCLAYSLSLN------------VL 548 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~------~~-~~~~~l~~-----~~~~v~~l~~sp~g~------------~l 548 (737)
.-+.++++|.+ .-++....+...+||.. .. ..+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34789999999 77777777899999986 12 22333321 124566777764322 36
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC--CCEEEEE--ecCcEEEEeCCCCcee--EEec
Q 004683 549 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI--HEGQIDVYEAPTLNHT--SQLV 622 (737)
Q Consensus 549 ~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~--~dg~I~iwd~~~~~~~--~~~~ 622 (737)
+.++.||+|.-|...-+..........+...... .--..+++... +.+|.+. ..++|.+||-.-.+.. ..+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 7788999999998543221000011111111110 22334666544 5777764 7899999987432221 0111
Q ss_pred CC---CC--CCCeEE------EEE---ccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEc
Q 004683 623 PD---KM--DLPITY------ATY---SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 623 ~~---~h--~~~v~~------~~~---sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
.+ .. ...|.. +.| .++++.=+.|..-|.|-+||.. |..++++... |.-+. -| .++..
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-----g~LNa-PW--G~a~A 252 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-----GRLNA-PW--GLAIA 252 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-----CcccC-Cc--eeeeC
Confidence 00 00 000111 111 1222222333445789999976 6667766422 11111 22 34433
Q ss_pred cC-----CCCEEEEEECCCcEEEEecCCCc
Q 004683 689 PL-----EPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 689 p~-----d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
|. .+.+|+---.||+|..+|..+++
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 31 35567766689999999998775
No 472
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.52 E-value=3 Score=28.75 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.1
Q ss_pred cceEEEEEeCCC---CEEEEEeCCCcEEEEeCCC
Q 004683 534 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 534 ~~v~~l~~sp~g---~~l~s~s~dg~I~lwdl~~ 564 (737)
+.+.++.|+|+. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888888889999999995
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.52 E-value=96 Score=36.91 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCCCCeEEEEEc---C--CC--eEEEEECCCeEEEEecC------CC---------cEEEEEcC---CCcceEEEEEeC-
Q 004683 490 NPPPIATYFILL---P--QD--LFAFGFDDSSILVHCPC------TK---------KTKAKLKG---HQNRITCLAYSL- 543 (737)
Q Consensus 490 ~~~~~v~~~~~s---~--~~--~l~sgs~dg~I~vwd~~------~~---------~~~~~l~~---~~~~v~~l~~sp- 543 (737)
....+|..|.|. . +. ..+..-....+.|+... .. .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 445677777776 2 11 34444445566666611 10 22333331 234667899998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc---cCCC----CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc
Q 004683 544 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ---TGLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 616 (737)
Q Consensus 544 ~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~---~~~~----~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~ 616 (737)
+.+.+|+....|...|||+..........+. .. .|+- .+......+.|.++...|+++....+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 4568999999999999999322111111111 11 1110 01134457899999899999988999999998776
Q ss_pred eeEEecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEEcCCC
Q 004683 617 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~--~~~l~sgs~dg~I~vwd~~~~ 659 (737)
....+........|..+.-+|. +..++-. ...|...++.+.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 5332222223577888888876 2222222 256777787763
No 474
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=52 Score=33.28 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=103.9
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
.+++...+..+..++|.|+.....+...-.+.. .+--.+ |.-.|++...+..|.-+.+.|+.+..
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyayg--v~vsGn~aYVadlddgfLivdvsdps-------- 159 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPS-------- 159 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccC-----CceEEE--EEecCCEEEEeeccCcEEEEECCCCC--------
Confidence 366777888888899999987432332222211 122233 34467887777766666677766432
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCc---EEEEecCCCCCeEEEEEcCCC-
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD- 504 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~- 504 (737)
+..+.-... .....-..++.||++-..+. |+-+.+-|+.+.. .+... .....+.++..+++-
T Consensus 160 ----------sP~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 160 ----------SPQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRA 226 (370)
T ss_pred ----------Cceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCee
Confidence 222222111 23333467788888777776 9999999986543 22222 222367777777776
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEE-EEeCCCCEEEEEeCCCcEEEEeCCC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l-~~sp~g~~l~s~s~dg~I~lwdl~~ 564 (737)
+++.. +.-+.+-|..+.+....+.. .+..+.++ .+.-.+++...+..+..+-+-|+..
T Consensus 227 y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 227 YLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 55544 34466667665543333321 12222222 3333566666666676777777765
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.57 E-value=34 Score=37.48 Aligned_cols=55 Identities=15% Similarity=-0.006 Sum_probs=38.0
Q ss_pred CCeEEEEEecCCCEEEEEe-cCcEEEEeCCCCce--eEEec---CCCCCCCeEEEEEccCC
Q 004683 585 TIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG 639 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~~~-dg~I~iwd~~~~~~--~~~~~---~~~h~~~v~~~~~sp~~ 639 (737)
...+.|+|.|+|+++++-. .|.|++++..++.. +..+. ..........++++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4678999999999888876 69999998655432 21111 11125668899999874
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.52 E-value=62 Score=33.94 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCC-eEEEEECCCe------EEEEecCC--C--cEE-----EEEcCCCc--------ceEEEEEeCCCCEE
Q 004683 493 PIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTK-----AKLKGHQN--------RITCLAYSLSLNVL 548 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs~dg~------I~vwd~~~--~--~~~-----~~l~~~~~--------~v~~l~~sp~g~~l 548 (737)
+.++.+.+.+++ .+++.+.+|. +..+++.. + ..+ ..+....+ ..-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 456788888655 6666677776 65555443 1 111 11111111 34478887888888
Q ss_pred EEEeCC------CcEEEEeCCCCceeeceeeee-c-cc----CCCCCCCCeEEEEEecCCCEEEEE------ecC--c--
Q 004683 549 VSSGAD------AQLCVWDAVGWKKLCSKFLHS-F-QT----GLVPETTIVNHIQFHPDQIHLLSI------HEG--Q-- 606 (737)
Q Consensus 549 ~s~s~d------g~I~lwdl~~~~~~~~~~~~~-~-~~----~~~~~~~~v~~l~~sp~g~~l~~~------~dg--~-- 606 (737)
++.-.+ ..|+.++.. +.......+.. + .. ...+.+...-+++++|+|+.|++. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877667 778888877 33322221110 1 00 011123678899999999955542 233 1
Q ss_pred -----EEE--EeCCC-CceeEE--ecCCC-----CCCCeEEEEEccCCCEEEEEe-----cCCeEEEEEcC
Q 004683 607 -----IDV--YEAPT-LNHTSQ--LVPDK-----MDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTS 657 (737)
Q Consensus 607 -----I~i--wd~~~-~~~~~~--~~~~~-----h~~~v~~~~~sp~~~~l~sgs-----~dg~I~vwd~~ 657 (737)
+++ ||..+ +..... +.... ....+..+.+-+++++|+.=- ....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 323222 22211 356788999999999877411 23455555443
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.40 E-value=7.5 Score=41.19 Aligned_cols=293 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc---ccccc
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---SLEEE 427 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~---~~g~~ 427 (737)
|+.-.--+.||+=..|.+.....+......+..- ..-+|.-..--|....++.|..||.+.+...+-... +.-..
T Consensus 80 G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal--~~ppv~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~F 157 (733)
T COG4590 80 GENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQAL--GFPPVLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREF 157 (733)
T ss_pred cceeEEEecCCccEEEEecccCCCCCCchhhhhc--CCCCcccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccC
Q ss_pred ceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCC---CcEEEEecCCCCCeEEEEEcC
Q 004683 428 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLP 502 (737)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~ 502 (737)
.....+.-.|....... |...-..++-+ ...+++.+ ...+++..-+. ++.++.+......|..+-..|
T Consensus 158 p~g~~p~aLd~qgr~le-------h~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~P 230 (733)
T COG4590 158 PPGLEPLALDEQGRLLE-------HPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTP 230 (733)
T ss_pred CCCCCccccCcccCccc-------chHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECC
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCC------cceE-EEEEeCCCCEEEEEeCCCcEEEE-eCCCCceeeceee
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------NRIT-CLAYSLSLNVLVSSGADAQLCVW-DAVGWKKLCSKFL 573 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~------~~v~-~l~~sp~g~~l~s~s~dg~I~lw-dl~~~~~~~~~~~ 573 (737)
|| .+..-+. ..+.++++.+......--... +.|+ ++..-..|..+.+++.||.|.-| |.+.+.......+
T Consensus 231 dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~ 309 (733)
T COG4590 231 DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI 309 (733)
T ss_pred CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceee
Q ss_pred eecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 004683 574 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 652 (737)
Q Consensus 574 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~ 652 (737)
+.+.-.. .++..+.-..+.+-+++ ...|++.++.....+.+-.-.. ...+.-+++||++.++++- +.|.++
T Consensus 310 R~f~l~p----a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~~~Sp~~~~Ll~e-~~gki~ 381 (733)
T COG4590 310 RNFKLAP----AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLVAMSPNQAYLLSE-DQGKIR 381 (733)
T ss_pred eccccCc----ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcceeeeCcccchheee-cCCceE
Q ss_pred EEEcCCCee
Q 004683 653 VFDTSTLEL 661 (737)
Q Consensus 653 vwd~~~~~~ 661 (737)
++.+++..+
T Consensus 382 ~~~l~Nr~P 390 (733)
T COG4590 382 LAQLENRNP 390 (733)
T ss_pred EEEecCCCC
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.16 E-value=23 Score=38.31 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=85.2
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC-------EEEEEeCCCcEEEEeCCCCc-eeeceeeeec
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVGWK-KLCSKFLHSF 576 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~-------~l~s~s~dg~I~lwdl~~~~-~~~~~~~~~~ 576 (737)
.+..|+....++-.|++-|+.+..+..|... -+.|.|..+ .-++|-.+..|.-.|.+... .+.......
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd- 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD- 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh-
Confidence 4556666778888899999999999877654 567777542 22345556666666665421 111111110
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
..+. ....+..-..+| ++++ |..|.|++||--.-+....+. .-+..|..+..+.+|+++++.|. ..+.+-|
T Consensus 559 Y~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 559 YKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred cccc----ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 0011 223333333444 5555 688999999963322222222 23678999999999999988875 5666666
Q ss_pred cC
Q 004683 656 TS 657 (737)
Q Consensus 656 ~~ 657 (737)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 479
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.04 E-value=60 Score=33.39 Aligned_cols=83 Identities=8% Similarity=-0.078 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe-----cC-------------
Q 004683 544 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-----EG------------- 605 (737)
Q Consensus 544 ~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~-----dg------------- 605 (737)
+|+.-++-+..|.|.-+|.+++.. .++..++ +....++|. |.++++|. ++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~---e~Va~vp-------G~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~ 279 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKF---QPVAFLP-------GFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDA 279 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcE---EEEEECC-------CCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhh
Confidence 678888888899999999986543 2222122 456678887 77777641 11
Q ss_pred ---cEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 606 ---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 606 ---~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
.|.+.|+++|..+..+.-.+--..+..++.-|+
T Consensus 280 ~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 280 LGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred hcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 256667777766665544333444555555554
No 480
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.56 E-value=6 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCeEEEEEccCC---CEEEEEecCCeEEEEEcCC
Q 004683 628 LPITYATYSCDG---KCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 628 ~~v~~~~~sp~~---~~l~sgs~dg~I~vwd~~~ 658 (737)
+.|.++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4777777779999999995
No 481
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.54 E-value=6.3 Score=41.14 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=67.7
Q ss_pred CccchhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc----------HHHHHHHhhcCChHHHHHHHhhhcccCCCcc
Q 004683 136 SFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----------INYFREYITSGEWDNAEKYLSAFTNMNDNTY 205 (737)
Q Consensus 136 ~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~----------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~ 205 (737)
+..+.+.+.++.+|..++..+|....+..|-+|+|...+ +.++.+++..|+-.-|++.+.+-...-...-
T Consensus 110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~ 189 (394)
T KOG2817|consen 110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS 189 (394)
T ss_pred CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence 344445555799999999999999999999999998862 7889999999999999988865321111123
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 004683 206 SAKMFSQIQRQKYLEAVDRQ 225 (737)
Q Consensus 206 ~~~~~~~l~~q~~lEll~~~ 225 (737)
+.-.|. +..+.|++++...
T Consensus 190 s~LE~~-Lh~l~fl~l~~~g 208 (394)
T KOG2817|consen 190 SSLEFK-LHSLHFLSLIRGG 208 (394)
T ss_pred ccHHHH-HHHHHHHHHHhcC
Confidence 344566 8899999998774
No 482
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.37 E-value=80 Score=38.24 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=65.0
Q ss_pred CCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc-EEEE
Q 004683 451 DPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAK 528 (737)
Q Consensus 451 ~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~-~~~~ 528 (737)
...++|..++=...+|+++....|.+|+++....+--..--+-++.......-. +|+.|.--..|.+.-....- .+..
T Consensus 1095 E~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL 1174 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSL 1174 (1366)
T ss_pred hcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEE
Confidence 467888877766778888888899999995432221111011112111212222 56666666666665544322 2222
Q ss_pred EcC--CCcceEEEEEeCCCC--EEEEEeCCCcEEEEeCC
Q 004683 529 LKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAV 563 (737)
Q Consensus 529 l~~--~~~~v~~l~~sp~g~--~l~s~s~dg~I~lwdl~ 563 (737)
+.. ..-.+.++.|--+|. .++++..|++|++|-..
T Consensus 1175 ~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1175 LSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 221 233567778877765 47788889999988554
No 483
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.76 E-value=69 Score=33.20 Aligned_cols=232 Identities=12% Similarity=-0.037 Sum_probs=112.1
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCC--eE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG--KI 474 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg--~i 474 (737)
++++|+.|+.+|...+. .... .+...+. .+...|+++... -+.|++-+|+ .+
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~-------------------~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQ-------------------PGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQL 67 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccC-------------------CCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence 44689999988876543 2210 0112211 366789999888 5666666654 49
Q ss_pred EEEECCCCcE---------------EEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCC----cEEEEE---c
Q 004683 475 SIFSLETFQT---------------LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKL---K 530 (737)
Q Consensus 475 ~vwd~~~~~~---------------~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~----~~~~~l---~ 530 (737)
+.+++..-.. ....-++..+...+.+.... .++++....+|.++..... ...+.+ .
T Consensus 68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~ 147 (302)
T smart00036 68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFP 147 (302)
T ss_pred EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccccc
Confidence 9999832211 01112444434344444332 4445555666766543221 111110 0
Q ss_pred C-CCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCC--CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecC
Q 004683 531 G-HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 605 (737)
Q Consensus 531 ~-~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg 605 (737)
. -..++..+..+++ ...+..|+..+...++++.. ... ....+........ ....++..-+++ .++.+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~---~~p~~i~~l~~~-e~Llc~~~ 222 (302)
T smart00036 148 LISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETS---LKPISVVQVPRD-EFLLCYDE 222 (302)
T ss_pred CCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccc---cCceEEEEECCC-eEEEEECc
Confidence 0 1223333333333 45677776653444555532 100 0001110000000 023333334444 44445555
Q ss_pred cEEEEeCCCC-ceeE--EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 606 QIDVYEAPTL-NHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 606 ~I~iwd~~~~-~~~~--~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.....|.. | +..+ .+. -...+.++++. ..+|++-+. ..|.|+++.+++.++.+.
T Consensus 223 ~~v~Vn~~-G~~~~r~~~l~---w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 223 FGVFVNLY-GKRRSRNPILH---WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA 279 (302)
T ss_pred EEEEEeCC-CCccccceEEE---cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence 55555653 3 2211 111 14455667766 467766654 459999999999888875
No 484
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.73 E-value=49 Score=33.97 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=74.9
Q ss_pred cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-----CEEEEE--ecCcEEEEeCCCCceeEEecCCCC--
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKM-- 626 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-----~~l~~~--~dg~I~iwd~~~~~~~~~~~~~~h-- 626 (737)
.|.+||+.+++......+. ..-....+.+..+++.... .++..+ ..+.|.|+|+.+++..+.....-.
T Consensus 35 KLv~~Dl~t~~li~~~~~p---~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFP---PDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEEEETTTTCEEEEEE-----CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEEEECCCCcEEEEEECC---hHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 5778888887654443332 1111111678888887732 344444 556899999998876555432110
Q ss_pred ---------------CCCeEEEEEcc---CCCEEEEEecCCeEEEEEcCCCeeE-----EEE-ecccccCCCCccCceee
Q 004683 627 ---------------DLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTLELR-----CQI-NLTAYAQPGTISLELYP 682 (737)
Q Consensus 627 ---------------~~~v~~~~~sp---~~~~l~sgs~dg~I~vwd~~~~~~~-----~~~-~~~~~~~~g~~~~~v~~ 682 (737)
...+.+++.+| ++++|+-+.-.+ -++|.+.+.-+. ... ........|..... .
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~--s 188 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQ--S 188 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---S--E
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCC--C
Confidence 12245555544 445555443222 112222211000 000 00000011211111 2
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 683 LVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
..++.++ +|.++.+--..+.|..|+...
T Consensus 189 ~g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 189 DGMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp CEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred ceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 3778888 788888888999999999986
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.24 E-value=23 Score=35.17 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=78.2
Q ss_pred EEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-C--CcEEEEeCCCCc--eeeceeeeecccCCCCCCCCeEE
Q 004683 515 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D--AQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNH 589 (737)
Q Consensus 515 I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-d--g~I~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~v~~ 589 (737)
-.+||+.+++....-........+-++.+||+++.+|+. + ..+++++..... +........+..+ .+-.+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-----RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-----RWYPT 122 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-----Ccccc
Confidence 457888887653322212223334467889999999876 2 357888754300 0000111111122 34446
Q ss_pred EEEecCCCEEEEE-e-cCcEEEEeCCC--CceeE-EecCC----CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 590 IQFHPDQIHLLSI-H-EGQIDVYEAPT--LNHTS-QLVPD----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 590 l~~sp~g~~l~~~-~-dg~I~iwd~~~--~~~~~-~~~~~----~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
+..-|||+.+++| . ..+...|.-.. ..... .+... ....---.+...|+|++++.+..++. |||..+.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~ 200 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNT 200 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCe
Confidence 6777899999985 3 33455665422 11111 11110 00111224556799999998886654 57888887
Q ss_pred eEEEEe
Q 004683 661 LRCQIN 666 (737)
Q Consensus 661 ~~~~~~ 666 (737)
.+..++
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 766654
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.08 E-value=6.9 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.2
Q ss_pred cCCCEEEEE--ecCcEEEEeCCCCceeEEecC
Q 004683 594 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 594 p~g~~l~~~--~dg~I~iwd~~~~~~~~~~~~ 623 (737)
|+++.++++ .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577777774 678999999999988887765
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.39 E-value=17 Score=34.09 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred eEEEEEccCC-----CCEEEEEECCCcEEEEecCCC-ceeeee
Q 004683 682 PLVIAAHPLE-----PNRIALGLTNGRVHVIEPLES-EVEWGK 718 (737)
Q Consensus 682 ~~~v~~sp~d-----~~~las~s~Dg~V~iWd~~~~-~~~w~~ 718 (737)
+.+++|||.+ +-+||+.+.+|.|.||..... ...|..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 4589999942 337999999999999999865 556755
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.28 E-value=53 Score=35.87 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
..|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34899999998899999999999999999853
No 489
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=79.24 E-value=3.7 Score=32.85 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHhhccccc
Q 004683 121 VNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFF 173 (737)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~ 173 (737)
+-+.+|+..++. .+---++.||..||+=+||+.|+..++.|+|..-
T Consensus 4 l~ne~lkk~l~t-------~eg~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 4 LVNENLKKFLST-------KEGRLINELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp ---HHHHHHHTS-------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred ccchHHHHHhcC-------chhHHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 345566666653 3344567899999999999999999999999854
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.57 E-value=98 Score=33.03 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=105.0
Q ss_pred cCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCE--EEEEe--C--
Q 004683 398 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH--LFSAS--G-- 471 (737)
Q Consensus 398 pdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~--l~s~s--d-- 471 (737)
|...+++...+++-+.+||+.... +..+ ..|.+-. -+-...+.+.|+. |+.++ +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~------lq~~-------~~Gr~NN-------VDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE------LQSL-------PVGRPNN-------VDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E------EEEE--------SS-EEE-------EEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred cccceEEEEeCCCCEEEEcCCCcE------EEee-------cCCCcce-------eeeecceecCCceEEEEEEecCcCC
Confidence 455677888888889999887432 2111 1111100 0011112222332 45555 2
Q ss_pred -CeEEEEECC--CCcEEEEecCC-------CCCeEEEEE--cC-CC--eEEEEECCCeEEEEecC---CC----cEEEEE
Q 004683 472 -GKISIFSLE--TFQTLATFANP-------PPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC---TK----KTKAKL 529 (737)
Q Consensus 472 -g~i~vwd~~--~~~~~~~~~~~-------~~~v~~~~~--s~-~~--~l~sgs~dg~I~vwd~~---~~----~~~~~l 529 (737)
.+|++|.+. ++. +..+... ...+..+++ ++ +| ++++...+|.+..|-+. ++ +.++.|
T Consensus 126 ~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 368999775 343 3333211 123445554 44 45 77788889988877664 33 356777
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe--cCC-CEEEE-E-ec
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQ-IHLLS-I-HE 604 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~g-~~l~~-~-~d 604 (737)
.. .+.+..|+.......|..+-.+.-|.-|+.+.........+......+-. ..|-.+++- +++ .||++ + .+
T Consensus 205 ~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~--aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 205 KV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV--ADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp E--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred cC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc--cCccceEEEecCCCCeEEEEEcCCC
Confidence 64 45788999999888999999998888888764322222223212111111 467777764 344 46666 4 67
Q ss_pred CcEEEEeCCC
Q 004683 605 GQIDVYEAPT 614 (737)
Q Consensus 605 g~I~iwd~~~ 614 (737)
++..+|+.+.
T Consensus 282 ~sf~Vy~r~~ 291 (381)
T PF02333_consen 282 NSFAVYDREG 291 (381)
T ss_dssp TEEEEEESST
T ss_pred CeEEEEecCC
Confidence 8899999864
No 491
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.27 E-value=82 Score=31.96 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=86.6
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecC--CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc---
Q 004683 452 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--- 524 (737)
Q Consensus 452 h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~--- 524 (737)
-.+-+..+.+++++...+. +.-+++.|+.+...-..... -.+-..++.. .| +..++..|.-+.+.|+.+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455667788878877777 78899999987544333221 1122333333 45 66666656666677776543
Q ss_pred EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEec
Q 004683 525 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 604 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~d 604 (737)
....+.........++.+ |++...+..|+-+.+.|+..... ...+.....+ ..+.++..+++..+++...
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s--Pvli~~~n~g-----~g~~sv~vsdnr~y~vvy~- 232 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS--PVLIGSYNTG-----PGTYSVSVSDNRAYLVVYD- 232 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC--CeEEEEEecC-----CceEEEEecCCeeEEEEcc-
Confidence 233343334444556665 67788888999999999986211 0111111111 3577888887766555432
Q ss_pred CcEEEEeCCC
Q 004683 605 GQIDVYEAPT 614 (737)
Q Consensus 605 g~I~iwd~~~ 614 (737)
..+.+-|..+
T Consensus 233 egvlivd~s~ 242 (370)
T COG5276 233 EGVLIVDVSG 242 (370)
T ss_pred cceEEEecCC
Confidence 3344445443
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=77.48 E-value=1.2e+02 Score=33.63 Aligned_cols=272 Identities=13% Similarity=0.089 Sum_probs=130.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
..+|..+.+...|. +-.|+.||-.+ ||..+++.++.... ....+|..+.-+ +..+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL~~----------------------fd~~~gkalql~s~-~~dk~I~al~~d~qg~L 219 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGLSY----------------------FDAGRGKALQLASP-PLDKAINALIADVQGRL 219 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcceE----------------------EccccceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence 46788888888886 45666666542 44445554443221 123556666666 7778
Q ss_pred EEEeCCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCC--CcceEEEEEeC
Q 004683 467 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL 543 (737)
Q Consensus 467 ~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~--~~~v~~l~~sp 543 (737)
..|++.-|++.+........-.. -....|..+.-..+|.+-.|+.+|..+.--.+.+-.....+.| .+.|.++..+.
T Consensus 220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence 88887778887776422211111 2233444444334446667777765543332322222222222 24556666666
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC--CCEEEE-EecCcEEEEeCCCCceeEE
Q 004683 544 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 544 ~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~-~~dg~I~iwd~~~~~~~~~ 620 (737)
+|. +-+++.+|.+++-+-.- +....+. -..| ..+...+.+|. +..+-. .+.|.+.+-+-.+|..++.
T Consensus 300 dGs-LWv~t~~giv~~~~a~w---~~ma~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s 369 (671)
T COG3292 300 DGS-LWVGTYGGIVRYLTADW---KRMAVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS 369 (671)
T ss_pred CCC-EeeeccCceEEEecchh---hheeeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence 665 55566666555433211 0001111 0111 11222222221 111111 1223344444555665555
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
...- ....|+.+++..+|+. -.|+...-+.-|+-++ +....... |-..+.+. ++.-.| +++ |-.|+
T Consensus 370 v~q~-Rg~nit~~~~d~~g~l-Wlgs~q~GLsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIGT 436 (671)
T COG3292 370 VHQL-RGMNITTTLEDSRGRL-WLGSMQNGLSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIGT 436 (671)
T ss_pred eeec-cccccchhhhccCCcE-EEEecccchhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEec
Confidence 4321 2456777777665554 3444443355566555 32222221 11133333 666677 555 77777
Q ss_pred CCCcEEE
Q 004683 700 TNGRVHV 706 (737)
Q Consensus 700 ~Dg~V~i 706 (737)
.+|.++.
T Consensus 437 s~Glvk~ 443 (671)
T COG3292 437 SGGLVKR 443 (671)
T ss_pred cCCeEec
Confidence 7776543
No 493
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.32 E-value=1.1e+02 Score=33.12 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=79.0
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec----CCCEEEEEECCCcEEEeeccCCccccc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp----dg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
+...+++||..|.++|++.........-..++.+ -..+|..++.-+ .....++.=.-..+.||.+.... |
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~---g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD---G 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC---C
Confidence 4578999999999999998653211111111111 356888887643 12222233344566777663211 1
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCC--CeEEEE---Ee---C-CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKD--SISCFA---LR---G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIA 495 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~--~V~~v~---~s---~-~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v 495 (737)
.. +.|...+......|.- ....++ |- + .++..=+ ||.+.+++-+.....+.+.. .--.
T Consensus 110 ~~-----------~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llP 177 (418)
T PF14727_consen 110 TV-----------EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLP 177 (418)
T ss_pred Cc-----------ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCC
Confidence 10 0000000000001211 111222 22 2 3455555 99999999776544444432 2222
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEec
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCP 520 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~ 520 (737)
..+.+.+.. .|++++.+..+..|..
T Consensus 178 gPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 178 GPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred cCeEEeecCCEEEEecCceeEEEecH
Confidence 356777777 8888888888888864
No 494
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.74 E-value=1.9 Score=42.20 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh-cccccc
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL-ALKDLR 80 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (737)
.|.|+||+.|+..+ +.|+. .-|-+||-|--=..-.|...+|+.-|.+=|+.|+ ...|..++++++- ...+|.
T Consensus 99 ~~~~~~A~e~y~~l--L~ddp----t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 99 TGNYKEAIEYYESL--LEDDP----TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred hhchhhHHHHHHHH--hccCc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHH
Confidence 58999999998765 44442 4466788887777788999999999999999999 7788999999876 444444
Q ss_pred c
Q 004683 81 E 81 (737)
Q Consensus 81 ~ 81 (737)
+
T Consensus 172 k 172 (289)
T KOG3060|consen 172 K 172 (289)
T ss_pred H
Confidence 4
No 495
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=2.2 Score=43.76 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCchhhHhhhhhcccc-cCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTK-LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
+|+...|-.+-++=+. +. +....+-|++|=|+|.|.+.-++..||+...+|.+.+++.-+.+-.+-++.+|
T Consensus 165 ~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~l 236 (389)
T KOG0396|consen 165 AGELEPALSWCKEHKVELK--KEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLL 236 (389)
T ss_pred hcchHHHHHHHHHHHHHHH--hccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 4555555554444333 33 33457889999999999999999999999999999999954433333333333
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.22 E-value=2e+02 Score=35.41 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCeEEE--EecCCC---c-E----------------EEEEc-CCCcceEEEEEeCCCC
Q 004683 490 NPPPIATYFILLPQDLFAFGFDDSSILV--HCPCTK---K-T----------------KAKLK-GHQNRITCLAYSLSLN 546 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~~l~sgs~dg~I~v--wd~~~~---~-~----------------~~~l~-~~~~~v~~l~~sp~g~ 546 (737)
.....|.|+....+|.++.++.||.|+- |....| + + +-.+. .+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 3345788888777776666666775542 222211 1 1 11122 4567899999988888
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 004683 547 VLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 547 ~l~s~s~dg~I~lwdl~~ 564 (737)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 888999999999999976
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.17 E-value=14 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.0
Q ss_pred cceEEEEEeCCC------CEEEEEeCCCcEEEEeCCC
Q 004683 534 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 534 ~~v~~l~~sp~g------~~l~s~s~dg~I~lwdl~~ 564 (737)
..+.+++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 3588888999999997664
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=75.41 E-value=26 Score=40.37 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=88.9
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceee
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~ 431 (737)
..+..|+.++.+.|+.-.... ...+..- .+.. ....+.++.+++.. +..|.-||++-.+--...
T Consensus 548 PTic~gtq~ssisissss~~s-~ke~~~~-~~sp-e~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~----------- 611 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDS-IKEVTSE-PPSP-EHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPS----------- 611 (925)
T ss_pred CcccccCccceeEEeeccCCc-ccceecc-CCCC-chhhhhhhhccccc--cccCccCCccccccCCCC-----------
Confidence 356678888888888765211 1111111 1111 24567777777643 455666777655432211
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCC-eEE
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFA 507 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~ 507 (737)
..||.+....+. -...+|.+.++....++++.+|.|.++...+....+... .|...|+++....+| +++
T Consensus 612 --gSwd~ep~~~~~-----~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 612 --GSWDGEPNISIP-----TGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred --CCCCCCCccccc-----cCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEE
Confidence 125554333322 245678888888777777779999999998876665554 345578999998888 666
Q ss_pred EEECCCeEEEEecCCC
Q 004683 508 FGFDDSSILVHCPCTK 523 (737)
Q Consensus 508 sgs~dg~I~vwd~~~~ 523 (737)
.++.| .++.++.++-
T Consensus 685 fasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 685 FASGD-EERLFHTETL 699 (925)
T ss_pred EcCCC-EEEEeccccc
Confidence 65544 4455555443
No 499
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.35 E-value=5.7 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.8
Q ss_pred CEEEEEECCCcEEEEecCCCceeeee
Q 004683 693 NRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
..+..++.+|.+..+|..+|+..|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999999964
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.08 E-value=33 Score=34.09 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=76.4
Q ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-C--CeEEEEecCC--CcE--EE---EEcCCCcceEEEEEe
Q 004683 474 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCT--KKT--KA---KLKGHQNRITCLAYS 542 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-d--g~I~vwd~~~--~~~--~~---~l~~~~~~v~~l~~s 542 (737)
-.+||+.+++....-...+.-+.+-++-+|| .+.+|+. + ..+++++..+ +.+ .. .+. ....-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 3478888775533222223333444677899 7777765 2 2578887654 111 11 111 12223345567
Q ss_pred CCCCEEEEEeCCCc-EEEEeCCCC--ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeE
Q 004683 543 LSLNVLVSSGADAQ-LCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 543 p~g~~l~s~s~dg~-I~lwdl~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~ 619 (737)
|||+.++.|+.+.. ..+|.-... .......+........ ...-..+...|+|+.++.+..+ -.|||..+.+.++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~--~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLP--NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCc--cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEe
Confidence 89999999887743 444544221 0000001110000000 0223367778999998887544 4467888887766
Q ss_pred Eec
Q 004683 620 QLV 622 (737)
Q Consensus 620 ~~~ 622 (737)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 664
Done!