Query 004683
Match_columns 737
No_of_seqs 792 out of 4248
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 02:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.7E-47 5.9E-52 417.7 41.3 281 382-709 104-409 (410)
2 1nr0_A Actin interacting prote 100.0 1.2E-42 4E-47 399.6 48.2 365 319-713 49-569 (611)
3 1nr0_A Actin interacting prote 100.0 1.6E-41 5.6E-46 390.0 52.2 342 345-711 24-522 (611)
4 1got_B GT-beta; complex (GTP-b 100.0 2.7E-40 9.4E-45 351.3 44.9 282 382-708 51-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 2.1E-40 7.1E-45 349.1 43.3 284 382-710 28-320 (321)
6 2ymu_A WD-40 repeat protein; u 100.0 1.1E-39 3.8E-44 372.1 49.8 326 345-708 227-577 (577)
7 1got_B GT-beta; complex (GTP-b 100.0 2.3E-39 7.9E-44 344.2 44.0 289 320-655 46-340 (340)
8 4g56_B MGC81050 protein; prote 100.0 2.8E-40 9.5E-45 353.6 37.1 320 347-713 13-345 (357)
9 2ynn_A Coatomer subunit beta'; 100.0 1.6E-39 5.5E-44 339.7 40.7 284 382-711 9-302 (304)
10 4gqb_B Methylosome protein 50; 100.0 6.8E-40 2.3E-44 348.2 37.5 287 387-712 29-332 (344)
11 3ow8_A WD repeat-containing pr 100.0 1.8E-39 6.2E-44 342.0 40.0 291 321-657 24-320 (321)
12 3frx_A Guanine nucleotide-bind 100.0 6E-39 2.1E-43 337.8 43.4 295 381-712 12-318 (319)
13 1vyh_C Platelet-activating fac 100.0 1.8E-39 6.2E-44 354.2 40.4 381 136-657 2-410 (410)
14 2pbi_B Guanine nucleotide-bind 100.0 4.7E-39 1.6E-43 343.8 42.0 282 382-708 60-354 (354)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.9E-39 2.3E-43 341.3 40.7 300 382-716 11-340 (345)
16 4ery_A WD repeat-containing pr 100.0 3.8E-38 1.3E-42 330.3 44.8 289 378-710 15-311 (312)
17 2ymu_A WD-40 repeat protein; u 100.0 9E-38 3.1E-42 356.3 49.3 331 344-713 185-540 (577)
18 3iz6_a 40S ribosomal protein R 100.0 3.1E-39 1.1E-43 348.7 34.3 292 382-713 62-377 (380)
19 2pbi_B Guanine nucleotide-bind 100.0 3.2E-38 1.1E-42 337.3 41.3 290 321-655 56-354 (354)
20 3frx_A Guanine nucleotide-bind 100.0 7.1E-38 2.4E-42 329.6 40.9 290 323-659 11-318 (319)
21 1gxr_A ESG1, transducin-like e 100.0 2E-37 6.7E-42 327.2 43.2 315 345-710 15-336 (337)
22 3iz6_a 40S ribosomal protein R 100.0 9.6E-39 3.3E-43 344.9 33.6 305 319-660 56-377 (380)
23 1r5m_A SIR4-interacting protei 100.0 1.5E-37 5.3E-42 339.0 41.4 324 342-710 48-424 (425)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-37 7.4E-42 329.7 39.3 293 345-665 22-342 (345)
25 2xzm_R RACK1; ribosome, transl 100.0 5.2E-37 1.8E-41 326.5 41.2 295 382-713 17-342 (343)
26 1erj_A Transcriptional repress 100.0 6.7E-37 2.3E-41 332.0 41.9 301 387-712 63-390 (393)
27 2hes_X YDR267CP; beta-propelle 100.0 9.1E-37 3.1E-41 322.7 41.9 290 382-711 10-328 (330)
28 2pm9_A Protein WEB1, protein t 100.0 1.8E-38 6.2E-43 346.1 28.6 332 345-712 18-415 (416)
29 1pgu_A Actin interacting prote 100.0 7E-36 2.4E-40 342.9 49.3 343 344-711 23-614 (615)
30 4aow_A Guanine nucleotide-bind 100.0 6.3E-36 2.2E-40 316.4 44.7 296 381-713 33-339 (340)
31 2xzm_R RACK1; ribosome, transl 100.0 2.6E-36 8.9E-41 321.0 41.4 298 321-660 13-342 (343)
32 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-36 1.1E-40 359.3 46.7 351 342-713 20-666 (902)
33 4g56_B MGC81050 protein; prote 100.0 4.3E-37 1.5E-41 328.9 35.1 281 345-660 48-345 (357)
34 4gqb_B Methylosome protein 50; 100.0 2.2E-36 7.6E-41 321.2 38.9 279 345-660 36-333 (344)
35 3vl1_A 26S proteasome regulato 100.0 6.2E-37 2.1E-41 334.8 35.5 321 345-711 62-419 (420)
36 4aow_A Guanine nucleotide-bind 100.0 8.7E-36 3E-40 315.4 42.8 293 322-660 31-339 (340)
37 2hes_X YDR267CP; beta-propelle 100.0 5.4E-36 1.9E-40 316.8 40.7 301 321-658 6-328 (330)
38 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.8E-35 2.7E-39 321.2 47.7 310 347-711 125-442 (445)
39 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-36 1.6E-40 373.2 42.1 343 345-718 705-1165(1249)
40 4ery_A WD repeat-containing pr 100.0 8E-35 2.7E-39 304.9 43.9 275 345-657 29-311 (312)
41 2ynn_A Coatomer subunit beta'; 100.0 2.3E-35 7.8E-40 308.2 38.9 273 344-658 18-302 (304)
42 3dm0_A Maltose-binding peripla 100.0 2.9E-35 9.9E-40 343.5 43.6 295 382-710 378-692 (694)
43 1erj_A Transcriptional repress 100.0 6.3E-35 2.1E-39 316.5 41.2 282 342-659 67-390 (393)
44 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-35 1.7E-39 364.1 45.8 322 344-715 620-1038(1249)
45 3zwl_B Eukaryotic translation 100.0 2.2E-34 7.4E-39 307.7 42.8 289 377-713 23-348 (369)
46 3gre_A Serine/threonine-protei 100.0 8.8E-36 3E-40 327.8 31.2 320 346-708 34-437 (437)
47 3dm0_A Maltose-binding peripla 100.0 2.1E-34 7.3E-39 336.1 42.1 277 347-658 390-693 (694)
48 3ei3_B DNA damage-binding prot 100.0 1.9E-34 6.4E-39 311.3 37.8 287 382-711 69-382 (383)
49 1sq9_A Antiviral protein SKI8; 100.0 2.1E-34 7.3E-39 312.0 37.0 298 382-713 12-397 (397)
50 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-36 1.6E-40 335.2 24.0 326 347-711 169-517 (524)
51 3v7d_B Cell division control p 100.0 1.9E-33 6.5E-38 311.7 44.4 304 347-709 128-461 (464)
52 3k26_A Polycomb protein EED; W 100.0 2.5E-34 8.5E-39 307.1 35.4 291 387-711 17-366 (366)
53 1gxr_A ESG1, transducin-like e 100.0 4.5E-33 1.5E-37 293.7 43.6 275 344-656 56-335 (337)
54 1r5m_A SIR4-interacting protei 100.0 5.2E-34 1.8E-38 311.0 37.4 290 387-713 44-363 (425)
55 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-34 1.8E-38 305.7 36.7 298 387-715 7-365 (372)
56 4h5i_A Guanine nucleotide-exch 100.0 1.1E-33 3.9E-38 303.2 39.0 293 388-712 14-344 (365)
57 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-33 1.5E-37 290.7 41.5 277 382-714 14-299 (313)
58 3i2n_A WD repeat-containing pr 100.0 2.9E-34 1E-38 305.6 32.7 287 382-713 14-355 (357)
59 4e54_B DNA damage-binding prot 100.0 1E-34 3.6E-39 319.3 30.0 289 387-714 118-433 (435)
60 4a11_B DNA excision repair pro 100.0 1.8E-33 6.1E-38 305.2 38.6 324 345-710 49-404 (408)
61 3dwl_C Actin-related protein 2 100.0 7.5E-35 2.6E-39 313.5 26.2 242 387-657 10-280 (377)
62 3zwl_B Eukaryotic translation 100.0 6.3E-33 2.2E-37 296.3 40.8 278 345-665 38-353 (369)
63 3odt_A Protein DOA1; ubiquitin 100.0 5.2E-33 1.8E-37 290.2 38.6 274 347-665 26-303 (313)
64 4aez_A CDC20, WD repeat-contai 100.0 3.3E-33 1.1E-37 303.8 38.5 278 349-665 101-387 (401)
65 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-33 1.4E-37 331.3 42.7 326 344-712 18-387 (814)
66 4aez_A CDC20, WD repeat-contai 100.0 4.1E-33 1.4E-37 303.0 38.7 288 382-718 87-387 (401)
67 4e54_B DNA damage-binding prot 100.0 2.9E-34 9.8E-39 315.7 29.3 287 344-662 124-434 (435)
68 3ei3_B DNA damage-binding prot 100.0 9.9E-33 3.4E-37 297.8 40.2 284 345-658 79-382 (383)
69 3vl1_A 26S proteasome regulato 100.0 2.4E-33 8.3E-38 306.2 35.4 286 389-713 57-367 (420)
70 4gga_A P55CDC, cell division c 100.0 1.1E-32 3.9E-37 301.5 40.6 279 345-665 111-402 (420)
71 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-33 1.2E-37 299.2 35.7 280 343-660 12-363 (372)
72 2pm9_A Protein WEB1, protein t 100.0 5E-34 1.7E-38 311.0 28.5 291 388-714 12-340 (416)
73 2oaj_A Protein SNI1; WD40 repe 100.0 4E-33 1.4E-37 332.5 38.5 175 387-566 16-244 (902)
74 4a11_B DNA excision repair pro 100.0 4.7E-33 1.6E-37 301.9 35.6 325 360-716 22-370 (408)
75 4gga_A P55CDC, cell division c 100.0 2.2E-32 7.4E-37 299.3 40.7 282 389-714 106-398 (420)
76 3v7d_B Cell division control p 100.0 4.5E-32 1.5E-36 300.6 43.5 282 381-717 116-427 (464)
77 3k26_A Polycomb protein EED; W 100.0 3.9E-33 1.3E-37 297.8 31.5 277 351-658 34-366 (366)
78 2pm7_B Protein transport prote 100.0 1.7E-32 5.9E-37 285.3 35.4 249 382-658 5-285 (297)
79 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-32 6.3E-37 325.7 40.5 287 382-715 9-306 (814)
80 4ggc_A P55CDC, cell division c 100.0 1E-31 3.4E-36 281.2 41.2 279 391-713 28-317 (318)
81 4ggc_A P55CDC, cell division c 100.0 8.3E-32 2.8E-36 281.9 39.5 274 345-660 31-317 (318)
82 1sq9_A Antiviral protein SKI8; 100.0 2.1E-32 7.2E-37 296.3 35.1 283 347-660 24-397 (397)
83 3gre_A Serine/threonine-protei 100.0 1.1E-32 3.8E-37 303.0 33.2 311 317-655 50-437 (437)
84 3dw8_B Serine/threonine-protei 100.0 1.6E-32 5.3E-37 302.3 34.3 306 387-710 27-445 (447)
85 3i2n_A WD repeat-containing pr 100.0 1.8E-32 6.2E-37 291.8 31.5 283 344-661 23-356 (357)
86 4h5i_A Guanine nucleotide-exch 100.0 2.1E-32 7.2E-37 293.4 31.9 289 345-659 20-344 (365)
87 2pm7_B Protein transport prote 100.0 7.9E-32 2.7E-36 280.3 34.5 250 451-718 7-291 (297)
88 3dwl_C Actin-related protein 2 100.0 4.1E-33 1.4E-37 299.9 25.5 283 342-656 14-377 (377)
89 1yfq_A Cell cycle arrest prote 100.0 7.3E-32 2.5E-36 285.6 33.5 278 387-708 10-321 (342)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.4E-31 3.2E-35 288.5 42.5 283 382-718 114-398 (445)
91 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-31 4.5E-36 294.5 34.9 278 387-720 132-423 (435)
92 3bg1_A Protein SEC13 homolog; 100.0 6.8E-32 2.3E-36 283.4 28.2 248 451-718 11-299 (316)
93 3bg1_A Protein SEC13 homolog; 100.0 7.1E-32 2.4E-36 283.3 26.8 245 382-657 9-292 (316)
94 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-31 7.1E-36 290.2 30.5 293 344-700 20-350 (588)
95 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.5E-35 279.6 35.1 251 382-660 7-289 (379)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-31 1.2E-35 287.9 30.6 288 347-662 42-346 (402)
97 1p22_A F-BOX/WD-repeat protein 100.0 7.2E-31 2.5E-35 288.6 33.2 268 347-665 139-421 (435)
98 3mmy_A MRNA export factor; mRN 100.0 1.7E-30 5.8E-35 277.3 34.6 283 382-711 35-346 (368)
99 3dw8_B Serine/threonine-protei 100.0 1.4E-30 4.8E-35 286.7 33.6 302 344-657 33-445 (447)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-31 2.6E-35 285.2 30.4 288 389-714 35-345 (402)
101 3f3f_A Nucleoporin SEH1; struc 100.0 6.4E-30 2.2E-34 270.1 35.6 250 451-714 9-340 (351)
102 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-30 1.3E-34 271.9 33.7 254 382-665 7-344 (351)
103 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-31 4.3E-36 299.3 23.5 274 349-659 223-518 (524)
104 1pgu_A Actin interacting prote 100.0 1.3E-29 4.6E-34 290.6 40.2 292 387-718 17-335 (615)
105 3jrp_A Fusion protein of prote 100.0 4.6E-30 1.6E-34 275.4 32.7 248 451-713 9-289 (379)
106 1yfq_A Cell cycle arrest prote 100.0 9.5E-30 3.3E-34 269.3 31.3 276 345-655 17-321 (342)
107 3bws_A Protein LP49; two-domai 100.0 2.6E-28 8.9E-33 267.5 41.7 280 388-711 122-432 (433)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-29 1.5E-33 275.7 35.2 300 388-716 4-396 (450)
109 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-29 6.3E-34 268.1 30.2 280 347-712 44-334 (343)
110 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-30 1.1E-34 280.8 24.6 265 387-710 14-296 (588)
111 1l0q_A Surface layer protein; 100.0 1.3E-27 4.3E-32 258.3 41.5 316 352-714 3-345 (391)
112 3mmy_A MRNA export factor; mRN 100.0 6.4E-29 2.2E-33 265.1 30.4 293 319-658 29-346 (368)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-28 3.7E-33 263.5 32.0 285 387-713 18-338 (355)
114 3vu4_A KMHSV2; beta-propeller 100.0 2.3E-28 7.8E-33 261.0 29.6 269 345-659 25-337 (355)
115 2xyi_A Probable histone-bindin 100.0 3.9E-28 1.3E-32 266.3 31.8 243 451-712 126-411 (430)
116 2xyi_A Probable histone-bindin 100.0 5.7E-28 1.9E-32 265.0 33.0 250 387-659 127-411 (430)
117 3jro_A Fusion protein of prote 100.0 1.2E-28 4.1E-33 289.6 27.7 248 451-713 7-287 (753)
118 4gq1_A NUP37; propeller, trans 100.0 5.6E-28 1.9E-32 261.7 30.8 305 388-709 15-387 (393)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-27 3.6E-32 264.6 33.0 246 387-657 101-390 (450)
120 3jro_A Fusion protein of prote 100.0 2E-28 6.7E-33 287.7 28.6 250 382-659 5-286 (753)
121 1l0q_A Surface layer protein; 100.0 3.2E-26 1.1E-30 247.2 38.7 266 401-717 3-281 (391)
122 3bws_A Protein LP49; two-domai 100.0 3.3E-26 1.1E-30 250.8 36.8 273 342-658 125-432 (433)
123 1nir_A Nitrite reductase; hemo 100.0 7.8E-26 2.7E-30 254.4 38.4 331 347-719 145-522 (543)
124 4gq1_A NUP37; propeller, trans 100.0 3.2E-27 1.1E-31 255.8 25.4 285 347-656 26-387 (393)
125 3lrv_A PRE-mRNA-splicing facto 100.0 4.5E-27 1.5E-31 249.6 25.8 236 463-718 48-299 (343)
126 2w18_A PALB2, fancn, partner a 100.0 1E-26 3.5E-31 238.3 25.9 271 354-656 57-355 (356)
127 2w18_A PALB2, fancn, partner a 100.0 1E-25 3.4E-30 231.1 31.6 236 456-709 42-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.4E-24 1.8E-28 232.0 31.6 288 346-690 69-408 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 6.5E-24 2.2E-28 249.4 34.3 320 344-712 41-460 (741)
130 1k32_A Tricorn protease; prote 99.9 2.9E-23 9.8E-28 252.9 34.8 331 343-713 56-463 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.3E-24 3.2E-28 230.1 25.8 277 388-713 62-389 (415)
132 1ri6_A Putative isomerase YBHE 99.9 4.7E-22 1.6E-26 209.8 35.1 276 354-661 8-313 (343)
133 1xfd_A DIP, dipeptidyl aminope 99.9 3E-23 1E-27 243.0 28.1 322 345-713 22-445 (723)
134 3u4y_A Uncharacterized protein 99.9 2.9E-21 9.8E-26 203.2 37.2 287 394-717 3-310 (331)
135 3vgz_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 204.1 36.2 270 388-702 40-335 (353)
136 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.7E-26 220.6 32.6 275 396-715 145-462 (543)
137 2z3z_A Dipeptidyl aminopeptida 99.9 9.5E-22 3.2E-26 229.7 32.9 313 347-713 33-437 (706)
138 2ecf_A Dipeptidyl peptidase IV 99.9 4.7E-22 1.6E-26 233.5 29.4 291 388-711 36-413 (741)
139 1k32_A Tricorn protease; prote 99.9 2.4E-21 8.2E-26 236.0 34.7 230 455-712 246-503 (1045)
140 1pby_B Quinohemoprotein amine 99.9 2.5E-21 8.5E-26 203.7 27.0 270 401-720 2-319 (337)
141 3u4y_A Uncharacterized protein 99.9 2.1E-20 7.1E-25 196.6 34.0 277 347-661 5-307 (331)
142 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4E-25 198.5 30.0 273 352-667 2-319 (337)
143 1ri6_A Putative isomerase YBHE 99.9 3E-20 1E-24 195.9 32.7 269 401-710 5-307 (343)
144 3vgz_A Uncharacterized protein 99.9 9.5E-20 3.2E-24 193.1 33.9 269 345-649 46-335 (353)
145 1xfd_A DIP, dipeptidyl aminope 99.9 4.8E-21 1.6E-25 224.3 24.4 279 389-712 17-394 (723)
146 3scy_A Hypothetical bacterial 99.9 4E-19 1.4E-23 189.5 35.8 285 348-663 10-344 (361)
147 2ojh_A Uncharacterized protein 99.9 3.8E-20 1.3E-24 190.2 25.8 252 356-649 17-293 (297)
148 3hfq_A Uncharacterized protein 99.9 3.5E-19 1.2E-23 188.8 33.7 260 436-714 23-322 (347)
149 1z68_A Fibroblast activation p 99.9 2E-20 6.7E-25 219.0 25.9 318 345-714 21-446 (719)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 7.7E-19 2.6E-23 192.0 36.5 309 388-711 36-405 (434)
151 2ojh_A Uncharacterized protein 99.9 3.9E-20 1.3E-24 190.1 23.8 231 451-702 39-293 (297)
152 3hfq_A Uncharacterized protein 99.9 4.7E-19 1.6E-23 187.8 32.4 276 359-663 14-324 (347)
153 3o4h_A Acylamino-acid-releasin 99.8 1.1E-19 3.8E-24 207.1 25.7 266 388-711 21-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 5.5E-19 1.9E-23 186.8 28.1 240 459-721 5-335 (349)
155 2z3z_A Dipeptidyl aminopeptida 99.8 2.4E-19 8.3E-24 209.2 27.0 287 390-713 27-393 (706)
156 3o4h_A Acylamino-acid-releasin 99.8 3.2E-19 1.1E-23 203.3 26.0 261 346-658 28-315 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 7.5E-18 2.6E-22 181.2 32.9 297 387-715 29-386 (388)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.3E-18 8E-23 181.9 26.4 245 393-667 4-334 (349)
159 3scy_A Hypothetical bacterial 99.8 5.2E-17 1.8E-21 173.1 35.4 278 399-714 12-342 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-17 7.7E-22 193.5 34.1 329 345-713 22-451 (740)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-16 5.4E-21 169.8 32.5 282 354-660 5-343 (365)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 9.6E-18 3.3E-22 183.3 22.3 250 452-716 35-338 (434)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.8E-16 6.1E-21 169.4 31.2 248 453-712 39-342 (365)
164 3pe7_A Oligogalacturonate lyas 99.8 2.4E-17 8.4E-22 177.2 22.5 272 346-656 42-380 (388)
165 1z68_A Fibroblast activation p 99.7 3.9E-17 1.3E-21 191.0 22.0 287 343-666 63-451 (719)
166 4a5s_A Dipeptidyl peptidase 4 99.7 2.7E-16 9.4E-21 184.2 27.9 250 388-663 16-358 (740)
167 2oiz_A Aromatic amine dehydrog 99.7 1.6E-15 5.6E-20 161.5 30.7 298 349-693 13-360 (361)
168 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-14 4.1E-19 149.2 35.2 239 451-712 27-281 (286)
169 3c5m_A Oligogalacturonate lyas 99.7 1.4E-16 4.7E-21 171.6 21.5 280 390-710 37-381 (396)
170 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-15 2.5E-19 154.4 29.6 246 453-711 23-322 (329)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-13 5.4E-18 153.8 41.7 330 349-719 165-546 (567)
172 1q7f_A NHL, brain tumor CG1071 99.7 4.1E-14 1.4E-18 145.2 33.4 242 387-659 28-281 (286)
173 3c5m_A Oligogalacturonate lyas 99.7 2E-15 6.9E-20 162.4 23.3 282 345-661 41-387 (396)
174 3azo_A Aminopeptidase; POP fam 99.7 6.4E-15 2.2E-19 170.4 27.2 283 387-714 22-372 (662)
175 3fvz_A Peptidyl-glycine alpha- 99.7 2.8E-14 9.4E-19 149.9 29.3 260 388-658 23-322 (329)
176 3no2_A Uncharacterized protein 99.7 4.3E-14 1.5E-18 144.2 29.7 252 463-730 5-271 (276)
177 3dsm_A Uncharacterized protein 99.7 4.3E-14 1.5E-18 148.4 29.2 240 454-718 44-308 (328)
178 3azo_A Aminopeptidase; POP fam 99.7 1.7E-14 5.8E-19 166.8 28.5 280 347-664 31-375 (662)
179 2dg1_A DRP35, lactonase; beta 99.6 1.1E-13 3.6E-18 145.5 30.7 272 388-702 5-301 (333)
180 2oiz_A Aromatic amine dehydrog 99.6 2.5E-13 8.6E-18 144.5 30.4 240 458-717 54-342 (361)
181 2gop_A Trilobed protease; beta 99.6 2.3E-13 7.8E-18 143.7 29.3 248 350-660 23-332 (347)
182 2z2n_A Virginiamycin B lyase; 99.6 1.4E-11 4.7E-16 126.6 41.2 282 380-713 8-297 (299)
183 2gop_A Trilobed protease; beta 99.6 7.4E-13 2.5E-17 139.7 32.0 254 388-710 14-330 (347)
184 2xdw_A Prolyl endopeptidase; a 99.6 6.7E-13 2.3E-17 154.7 34.2 278 348-660 80-416 (710)
185 2xdw_A Prolyl endopeptidase; a 99.6 4.6E-13 1.6E-17 156.1 31.8 242 451-713 122-416 (710)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.2E-13 4.2E-18 160.4 24.6 279 347-661 75-400 (695)
187 2bkl_A Prolyl endopeptidase; m 99.6 1.3E-13 4.4E-18 160.3 24.0 239 451-714 118-400 (695)
188 3dsm_A Uncharacterized protein 99.6 3.1E-12 1.1E-16 134.1 32.0 267 359-666 15-309 (328)
189 3e5z_A Putative gluconolactona 99.5 3.9E-12 1.4E-16 131.1 30.6 230 452-712 26-287 (296)
190 2dg1_A DRP35, lactonase; beta 99.5 3.1E-12 1.1E-16 134.2 30.1 263 347-649 13-301 (333)
191 3e5z_A Putative gluconolactona 99.5 5.3E-12 1.8E-16 130.1 28.8 235 387-661 26-289 (296)
192 3sjl_D Methylamine dehydrogena 99.5 1E-11 3.6E-16 130.7 31.0 281 347-667 40-372 (386)
193 2z2n_A Virginiamycin B lyase; 99.5 1.3E-10 4.5E-15 119.2 38.7 269 347-660 22-297 (299)
194 1rwi_B Serine/threonine-protei 99.5 3.5E-12 1.2E-16 129.3 25.8 235 455-713 25-266 (270)
195 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.7E-15 124.4 37.0 282 347-665 28-357 (373)
196 1qks_A Cytochrome CD1 nitrite 99.5 4.1E-11 1.4E-15 134.3 35.1 270 398-712 165-478 (567)
197 2qc5_A Streptogramin B lactona 99.5 4E-10 1.4E-14 115.6 39.0 280 380-710 13-299 (300)
198 1yr2_A Prolyl oligopeptidase; 99.5 4E-12 1.4E-16 148.8 26.6 280 347-661 114-444 (741)
199 1rwi_B Serine/threonine-protei 99.5 9.5E-12 3.2E-16 126.0 25.8 236 390-660 25-266 (270)
200 3no2_A Uncharacterized protein 99.5 1.5E-11 5.1E-16 125.3 26.8 247 350-634 4-272 (276)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7E-11 2.4E-15 122.4 31.3 235 452-711 16-299 (314)
202 2mad_H Methylamine dehydrogena 99.4 6.2E-10 2.1E-14 118.4 37.7 238 458-717 70-356 (373)
203 3sjl_D Methylamine dehydrogena 99.4 8E-11 2.7E-15 123.9 30.1 281 394-719 38-371 (386)
204 1yr2_A Prolyl oligopeptidase; 99.4 4.4E-11 1.5E-15 140.0 28.1 242 452-714 161-444 (741)
205 2qc5_A Streptogramin B lactona 99.4 2.1E-09 7.1E-14 110.2 36.8 266 347-657 27-299 (300)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.3E-10 1.1E-14 117.3 29.5 244 388-658 17-299 (314)
207 3c75_H MADH, methylamine dehyd 99.4 1.7E-10 5.9E-15 123.6 26.5 280 347-665 80-409 (426)
208 1yiq_A Quinohemoprotein alcoho 99.3 7.5E-10 2.6E-14 127.6 30.8 292 400-721 70-515 (689)
209 1xip_A Nucleoporin NUP159; bet 99.3 4.2E-10 1.4E-14 118.9 26.2 170 454-644 38-230 (388)
210 1kb0_A Quinohemoprotein alcoho 99.3 8.7E-10 3E-14 126.8 30.9 293 400-721 77-517 (677)
211 3g4e_A Regucalcin; six bladed 99.3 1.7E-09 5.7E-14 111.5 29.6 225 389-647 13-261 (297)
212 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5.2E-09 1.8E-13 111.6 34.2 304 350-709 52-376 (376)
213 3hrp_A Uncharacterized protein 99.3 2.3E-09 7.8E-14 115.7 30.2 246 454-709 131-408 (409)
214 1kb0_A Quinohemoprotein alcoho 99.3 7.9E-10 2.7E-14 127.1 28.0 280 399-710 127-566 (677)
215 1yiq_A Quinohemoprotein alcoho 99.3 1.7E-09 5.7E-14 124.7 29.5 313 350-699 69-537 (689)
216 3g4e_A Regucalcin; six bladed 99.3 3.9E-09 1.3E-13 108.7 29.5 222 454-699 13-260 (297)
217 3c75_H MADH, methylamine dehyd 99.2 3E-09 1E-13 114.0 28.2 276 398-718 82-409 (426)
218 1xip_A Nucleoporin NUP159; bet 99.2 4.5E-10 1.5E-14 118.7 21.1 188 389-601 38-230 (388)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.1E-08 3.9E-13 108.9 32.2 284 399-720 52-346 (376)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 2E-08 6.8E-13 104.9 32.2 214 456-699 51-290 (326)
221 3hrp_A Uncharacterized protein 99.2 4.5E-09 1.5E-13 113.3 27.9 239 389-656 131-408 (409)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 2.3E-08 7.9E-13 104.4 30.7 223 391-648 51-292 (326)
223 3iuj_A Prolyl endopeptidase; h 99.2 1.6E-09 5.3E-14 125.6 23.4 240 387-662 127-409 (693)
224 3dr2_A Exported gluconolactona 99.2 6.3E-09 2.2E-13 107.5 25.3 228 388-655 44-303 (305)
225 2qe8_A Uncharacterized protein 99.2 3E-09 1E-13 112.0 22.7 270 389-708 17-318 (343)
226 3iuj_A Prolyl endopeptidase; h 99.1 3.3E-09 1.1E-13 122.9 23.6 237 451-714 126-408 (693)
227 3dr2_A Exported gluconolactona 99.1 2.7E-08 9.3E-13 102.7 27.1 224 452-705 43-301 (305)
228 3hxj_A Pyrrolo-quinoline quino 99.1 5.2E-09 1.8E-13 109.0 21.1 294 353-713 32-326 (330)
229 2ece_A 462AA long hypothetical 99.1 6E-08 2.1E-12 102.6 28.4 227 463-699 95-399 (462)
230 2hz6_A Endoplasmic reticulum t 99.1 7.5E-12 2.6E-16 133.4 -1.8 224 463-719 9-248 (369)
231 1mda_H Methylamine dehydrogena 99.0 8.5E-09 2.9E-13 108.6 20.4 228 473-718 47-353 (368)
232 1mda_H Methylamine dehydrogena 99.0 5.6E-09 1.9E-13 110.0 18.3 266 354-667 35-355 (368)
233 2hz6_A Endoplasmic reticulum t 99.0 1.7E-10 5.9E-15 122.8 6.8 187 503-719 8-200 (369)
234 2ece_A 462AA long hypothetical 99.0 4E-07 1.4E-11 96.4 30.5 237 397-646 90-399 (462)
235 1kv9_A Type II quinohemoprotei 99.0 2.3E-07 7.9E-12 106.5 30.7 292 400-721 66-498 (668)
236 1fwx_A Nitrous oxide reductase 99.0 3.9E-08 1.3E-12 107.7 22.5 238 457-713 90-433 (595)
237 1kv9_A Type II quinohemoprotei 98.9 2.2E-07 7.4E-12 106.7 28.0 291 350-667 65-497 (668)
238 1npe_A Nidogen, entactin; glyc 98.9 2.4E-06 8.2E-11 86.0 32.6 198 455-666 37-246 (267)
239 2ad6_A Methanol dehydrogenase 98.9 1.4E-06 5E-11 97.8 31.4 293 400-721 62-504 (571)
240 3hxj_A Pyrrolo-quinoline quino 98.9 2.4E-08 8.4E-13 103.9 15.6 267 394-720 25-292 (330)
241 1w6s_A Methanol dehydrogenase 98.9 1.1E-06 3.9E-11 98.6 29.3 252 394-667 111-512 (599)
242 2iwa_A Glutamine cyclotransfer 98.8 9.9E-07 3.4E-11 87.8 25.0 215 483-713 10-239 (266)
243 2ad6_A Methanol dehydrogenase 98.8 1.1E-06 3.8E-11 98.7 28.5 245 400-667 115-503 (571)
244 2qe8_A Uncharacterized protein 98.8 2.1E-07 7.2E-12 97.7 21.2 213 493-713 17-280 (343)
245 4a2l_A BT_4663, two-component 98.8 1.9E-05 6.4E-10 92.9 40.1 321 348-713 139-482 (795)
246 4a2l_A BT_4663, two-component 98.8 5E-05 1.7E-09 89.2 42.7 325 349-713 224-573 (795)
247 1npe_A Nidogen, entactin; glyc 98.8 9E-06 3.1E-10 81.7 30.6 231 464-718 2-245 (267)
248 3nol_A Glutamine cyclotransfer 98.8 7E-07 2.4E-11 87.8 20.9 199 484-698 33-243 (262)
249 1w6s_A Methanol dehydrogenase 98.8 4.6E-06 1.6E-10 93.7 30.4 291 400-720 62-512 (599)
250 1flg_A Protein (quinoprotein e 98.8 7.5E-06 2.6E-10 92.0 32.1 245 460-721 114-526 (582)
251 1flg_A Protein (quinoprotein e 98.7 6.4E-06 2.2E-10 92.6 30.8 247 400-667 117-525 (582)
252 2iwa_A Glutamine cyclotransfer 98.7 7.1E-06 2.4E-10 81.6 25.5 201 389-615 21-238 (266)
253 3nok_A Glutaminyl cyclase; bet 98.7 2.3E-06 8E-11 84.0 20.9 198 483-698 44-253 (268)
254 1fwx_A Nitrous oxide reductase 98.6 1.9E-06 6.7E-11 94.4 22.1 184 503-711 100-361 (595)
255 3nok_A Glutaminyl cyclase; bet 98.6 5.1E-06 1.7E-10 81.6 22.7 183 454-646 55-253 (268)
256 3nol_A Glutamine cyclotransfer 98.6 8.3E-06 2.8E-10 80.2 23.3 184 456-648 45-245 (262)
257 3mbr_X Glutamine cyclotransfer 98.6 2.2E-05 7.4E-10 76.5 25.8 200 483-698 10-222 (243)
258 3v9f_A Two-component system se 98.6 0.00027 9.4E-09 82.7 39.2 327 349-713 267-613 (781)
259 2fp8_A Strictosidine synthase; 98.6 4.5E-05 1.5E-09 78.9 28.7 233 456-712 21-314 (322)
260 3v9f_A Two-component system se 98.5 0.00049 1.7E-08 80.5 40.7 321 354-713 176-526 (781)
261 3mbr_X Glutamine cyclotransfer 98.5 5E-05 1.7E-09 74.0 26.4 187 453-647 20-223 (243)
262 2fp8_A Strictosidine synthase; 98.4 0.00011 3.8E-09 75.9 28.3 247 389-658 19-313 (322)
263 2xbg_A YCF48-like protein; pho 98.4 0.0011 3.8E-08 68.6 35.6 276 388-709 35-320 (327)
264 3v64_C Agrin; beta propeller, 98.4 0.00059 2E-08 71.3 31.9 232 458-713 38-277 (349)
265 2p4o_A Hypothetical protein; p 98.4 0.00028 9.4E-09 72.4 28.8 223 389-649 32-279 (306)
266 1ijq_A LDL receptor, low-densi 98.4 0.00069 2.3E-08 69.8 31.6 227 465-713 3-240 (316)
267 2xtc_A F-box-like/WD repeat-co 98.3 2.9E-07 1E-11 72.6 4.2 55 141-195 4-67 (90)
268 1ijq_A LDL receptor, low-densi 98.3 0.0011 3.9E-08 68.1 32.8 203 453-666 29-246 (316)
269 2p4o_A Hypothetical protein; p 98.3 0.00053 1.8E-08 70.2 30.0 228 454-701 32-278 (306)
270 3v65_B Low-density lipoprotein 98.3 0.00056 1.9E-08 72.7 30.4 227 463-713 87-320 (386)
271 3v64_C Agrin; beta propeller, 98.3 0.0016 5.3E-08 68.1 33.1 201 454-666 73-283 (349)
272 3qqz_A Putative uncharacterize 98.3 0.0011 3.7E-08 65.4 29.1 218 487-709 21-251 (255)
273 3v65_B Low-density lipoprotein 98.2 0.001 3.5E-08 70.6 30.5 202 453-666 115-326 (386)
274 1k3i_A Galactose oxidase precu 98.2 9.8E-05 3.4E-09 84.6 23.5 286 393-700 190-530 (656)
275 3p5b_L Low density lipoprotein 98.2 0.0023 7.7E-08 68.3 32.5 205 452-666 110-328 (400)
276 1k3i_A Galactose oxidase precu 98.2 7.5E-05 2.6E-09 85.6 22.2 268 346-647 192-530 (656)
277 3p5b_L Low density lipoprotein 98.2 0.0025 8.5E-08 67.9 32.4 229 463-713 83-322 (400)
278 3qqz_A Putative uncharacterize 98.2 0.0011 3.8E-08 65.3 26.6 199 451-657 24-252 (255)
279 2xbg_A YCF48-like protein; pho 98.1 0.017 5.7E-07 59.6 36.0 189 454-655 122-319 (327)
280 2xe4_A Oligopeptidase B; hydro 98.0 0.00028 9.6E-09 82.1 21.8 194 494-708 175-395 (751)
281 4hw6_A Hypothetical protein, I 98.0 0.0016 5.4E-08 70.2 25.9 245 455-710 140-432 (433)
282 3tc9_A Hypothetical hydrolase; 98.0 0.0029 9.8E-08 68.1 28.0 244 455-710 138-429 (430)
283 3sov_A LRP-6, low-density lipo 98.0 0.0019 6.5E-08 66.4 25.2 225 465-713 6-240 (318)
284 2xe4_A Oligopeptidase B; hydro 98.0 0.0016 5.5E-08 75.6 27.2 238 390-661 175-461 (751)
285 3amr_A 3-phytase; beta-propell 97.9 0.0071 2.4E-07 61.9 26.8 193 465-666 42-272 (355)
286 3m0c_C LDL receptor, low-densi 97.9 0.014 4.8E-07 67.5 32.7 203 452-665 422-639 (791)
287 3sov_A LRP-6, low-density lipo 97.8 0.013 4.6E-07 60.0 28.4 200 455-666 36-246 (318)
288 3m0c_C LDL receptor, low-densi 97.8 0.015 5E-07 67.3 30.9 229 463-713 395-634 (791)
289 3amr_A 3-phytase; beta-propell 97.8 0.011 3.7E-07 60.5 25.7 185 505-710 42-262 (355)
290 4hw6_A Hypothetical protein, I 97.8 0.0088 3E-07 64.3 26.7 242 389-657 139-432 (433)
291 3tc9_A Hypothetical hydrolase; 97.7 0.012 4.2E-07 63.2 27.4 240 390-657 138-429 (430)
292 3s94_A LRP-6, low-density lipo 97.7 0.1 3.6E-06 58.6 36.4 331 342-712 42-424 (619)
293 3ei3_A DNA damage-binding prot 97.7 0.15 5.2E-06 61.5 38.2 327 351-711 571-999 (1158)
294 4a0p_A LRP6, LRP-6, low-densit 97.7 0.053 1.8E-06 61.1 32.1 225 464-713 7-239 (628)
295 1n7d_A LDL receptor, low-densi 97.6 0.00031 1E-08 80.7 13.7 202 454-666 406-622 (699)
296 3kya_A Putative phosphatase; s 97.6 0.04 1.4E-06 59.6 28.2 252 455-714 140-478 (496)
297 3ei3_A DNA damage-binding prot 97.5 0.31 1.1E-05 58.8 38.4 306 351-713 523-915 (1158)
298 3kya_A Putative phosphatase; s 97.5 0.076 2.6E-06 57.4 28.7 250 390-663 140-480 (496)
299 2p9w_A MAL S 1 allergenic prot 97.4 0.092 3.2E-06 53.2 26.6 202 455-660 14-267 (334)
300 4a0p_A LRP6, LRP-6, low-densit 97.4 0.19 6.5E-06 56.6 32.2 198 454-665 37-244 (628)
301 2p9w_A MAL S 1 allergenic prot 97.4 0.011 3.8E-07 60.0 19.5 162 494-658 14-215 (334)
302 3s94_A LRP-6, low-density lipo 97.3 0.055 1.9E-06 60.9 26.6 225 466-713 12-245 (619)
303 1n7d_A LDL receptor, low-densi 97.3 0.00069 2.4E-08 77.8 10.7 227 466-714 380-617 (699)
304 2xzh_A Clathrin heavy chain 1; 97.3 0.18 6.2E-06 50.6 32.6 260 361-660 49-334 (365)
305 2xzh_A Clathrin heavy chain 1; 97.2 0.21 7.3E-06 50.1 35.0 225 463-712 78-333 (365)
306 1bpo_A Protein (clathrin); cla 97.1 0.34 1.1E-05 50.7 33.8 260 361-660 48-333 (494)
307 3a9g_A Putative uncharacterize 97.1 0.29 1E-05 50.7 27.9 230 454-699 29-330 (354)
308 1uuj_A Platelet-activating fac 97.1 0.00044 1.5E-08 54.2 4.4 64 134-197 2-67 (88)
309 3sre_A PON1, serum paraoxonase 97.1 0.22 7.4E-06 51.5 26.1 199 494-710 51-297 (355)
310 1bpo_A Protein (clathrin); cla 97.1 0.39 1.3E-05 50.2 35.1 225 463-712 77-332 (494)
311 3ii7_A Kelch-like protein 7; p 97.1 0.096 3.3E-06 53.0 23.2 228 465-718 14-277 (306)
312 2vpj_A Kelch-like protein 12; 97.0 0.081 2.8E-06 53.3 22.3 183 463-660 63-280 (301)
313 3ii7_A Kelch-like protein 7; p 97.0 0.13 4.5E-06 52.0 23.3 186 463-660 56-274 (306)
314 2ism_A Putative oxidoreductase 97.0 0.44 1.5E-05 49.3 27.6 229 454-699 31-333 (352)
315 2xn4_A Kelch-like protein 2; s 96.9 0.16 5.5E-06 51.2 23.0 222 472-720 30-283 (302)
316 2vpj_A Kelch-like protein 12; 96.9 0.13 4.4E-06 51.8 21.9 222 472-719 31-284 (301)
317 3pbp_A Nucleoporin NUP82; beta 96.8 0.079 2.7E-06 55.3 19.8 167 542-718 29-218 (452)
318 3pbp_A Nucleoporin NUP82; beta 96.8 0.083 2.8E-06 55.2 19.5 151 501-654 29-208 (452)
319 2be1_A Serine/threonine-protei 96.7 0.0031 1.1E-07 64.8 7.9 201 505-716 12-236 (339)
320 3ott_A Two-component system se 96.7 1 3.6E-05 51.9 30.4 233 453-713 21-262 (758)
321 2ism_A Putative oxidoreductase 96.6 0.31 1.1E-05 50.4 23.3 104 493-601 31-151 (352)
322 4asc_A Kelch repeat and BTB do 96.6 0.68 2.3E-05 46.8 25.3 224 470-719 11-283 (315)
323 2g8s_A Glucose/sorbosone dehyd 96.6 0.77 2.6E-05 47.4 25.9 237 455-709 19-350 (353)
324 2xn4_A Kelch-like protein 2; s 96.4 0.57 2E-05 47.0 23.1 184 463-660 62-278 (302)
325 3a9g_A Putative uncharacterize 96.3 0.99 3.4E-05 46.6 24.5 146 492-644 28-214 (354)
326 1zgk_A Kelch-like ECH-associat 96.2 0.44 1.5E-05 48.1 21.2 230 463-719 25-293 (308)
327 1xi4_A Clathrin heavy chain; a 96.2 0.45 1.5E-05 57.2 22.7 189 463-665 77-296 (1630)
328 1xi4_A Clathrin heavy chain; a 96.1 0.34 1.2E-05 58.2 21.3 260 361-660 48-333 (1630)
329 2be1_A Serine/threonine-protei 96.0 0.14 4.9E-06 52.4 16.0 196 402-619 12-236 (339)
330 3das_A Putative oxidoreductase 96.0 0.37 1.2E-05 49.6 18.9 114 529-646 27-158 (347)
331 1zgk_A Kelch-like ECH-associat 95.8 0.93 3.2E-05 45.6 21.1 174 472-660 90-289 (308)
332 2uvk_A YJHT; unknown function, 95.8 0.84 2.9E-05 47.0 21.2 57 606-666 286-350 (357)
333 3sre_A PON1, serum paraoxonase 95.8 0.6 2.1E-05 48.1 19.5 181 471-666 82-308 (355)
334 2uvk_A YJHT; unknown function, 95.7 1.1 3.9E-05 46.0 21.9 90 463-554 20-128 (357)
335 3sbq_A Nitrous-oxide reductase 95.6 3.2 0.00011 44.9 24.1 188 463-659 142-409 (638)
336 1tl2_A L10, protein (tachylect 95.5 0.16 5.6E-06 48.0 12.5 147 494-651 42-203 (236)
337 2woz_A Kelch repeat and BTB do 95.5 2.5 8.4E-05 42.6 24.3 222 472-719 24-293 (318)
338 4asc_A Kelch repeat and BTB do 95.4 2.6 8.8E-05 42.4 26.3 102 463-566 99-223 (315)
339 3ott_A Two-component system se 95.3 5.4 0.00019 45.7 40.6 321 349-713 155-504 (758)
340 1cru_A Protein (soluble quinop 95.2 3 0.0001 44.6 23.4 110 534-647 27-163 (454)
341 2woz_A Kelch repeat and BTB do 95.2 2.4 8.2E-05 42.7 21.7 191 458-663 51-292 (318)
342 1cru_A Protein (soluble quinop 94.9 4 0.00014 43.7 23.2 107 492-601 26-160 (454)
343 2g8s_A Glucose/sorbosone dehyd 94.7 0.85 2.9E-05 47.1 16.9 110 535-647 19-149 (353)
344 3das_A Putative oxidoreductase 94.6 2.3 7.8E-05 43.6 19.4 152 487-644 26-218 (347)
345 1tl2_A L10, protein (tachylect 94.2 0.7 2.4E-05 43.7 13.0 143 505-657 6-162 (236)
346 2zwa_A Leucine carboxyl methyl 93.7 3.3 0.00011 47.1 20.5 196 463-662 398-639 (695)
347 3s25_A Hypothetical 7-bladed b 93.2 7.6 0.00026 38.8 23.4 170 461-660 23-218 (302)
348 3qhy_B Beta-lactamase inhibito 92.9 3.4 0.00011 41.0 16.7 222 455-712 25-247 (282)
349 3s25_A Hypothetical 7-bladed b 92.5 9.5 0.00032 38.1 28.1 158 473-660 89-257 (302)
350 2zwa_A Leucine carboxyl methyl 91.2 15 0.0005 41.7 21.6 199 502-718 396-640 (695)
351 3qhy_B Beta-lactamase inhibito 90.9 11 0.00039 37.1 17.9 182 455-659 64-247 (282)
352 3sbq_A Nitrous-oxide reductase 86.4 3.5 0.00012 44.6 10.7 125 514-647 299-454 (638)
353 3q6k_A 43.2 kDa salivary prote 85.2 9.9 0.00034 39.3 13.3 151 556-711 124-306 (381)
354 2wg3_C Hedgehog-interacting pr 82.8 21 0.00071 38.1 15.1 113 535-649 15-160 (463)
355 3q6k_A 43.2 kDa salivary prote 81.6 51 0.0017 33.9 22.4 154 472-658 123-306 (381)
356 4gq2_M Nucleoporin NUP120; bet 80.8 7.2 0.00025 46.0 11.6 42 627-668 235-276 (950)
357 2wg3_C Hedgehog-interacting pr 76.3 45 0.0015 35.4 15.2 109 585-702 14-160 (463)
358 3no0_A DNA gyrase subunit A; D 72.7 73 0.0025 31.0 17.7 193 505-711 37-246 (276)
359 3b7f_A Glycosyl hydrolase, BNR 71.8 93 0.0032 31.8 25.8 217 494-719 116-378 (394)
360 4hvt_A Ritya.17583.B, post-pro 70.4 1.4E+02 0.005 33.5 25.1 180 472-660 216-431 (711)
361 4gq2_M Nucleoporin NUP120; bet 66.8 63 0.0022 37.9 14.8 40 534-573 236-275 (950)
362 3uc1_A DNA gyrase subunit A; D 66.7 1.1E+02 0.0037 30.6 20.4 150 503-658 108-279 (327)
363 4hvt_A Ritya.17583.B, post-pro 65.9 1.8E+02 0.0061 32.8 19.1 191 500-713 137-383 (711)
364 2d68_A FOP, FGFR1OP; alpha hel 65.8 7.1 0.00024 30.2 4.2 44 122-172 5-48 (82)
365 3vtx_A MAMA; tetratricopeptide 62.5 48 0.0016 29.2 10.4 14 183-196 153-166 (184)
366 3f7f_A Nucleoporin NUP120; nuc 62.5 65 0.0022 36.1 12.8 31 637-667 229-259 (729)
367 3as5_A MAMA; tetratricopeptide 62.3 73 0.0025 27.4 11.6 66 2-74 21-86 (186)
368 2ho1_A Type 4 fimbrial biogene 57.9 88 0.003 28.9 11.9 66 2-74 50-115 (252)
369 2pl2_A Hypothetical conserved 56.2 1.2E+02 0.0041 27.7 12.3 66 2-74 18-83 (217)
370 2vq2_A PILW, putative fimbrial 55.1 67 0.0023 28.9 10.3 66 2-74 21-86 (225)
371 4g26_A Pentatricopeptide repea 55.0 13 0.00045 40.1 5.7 51 148-198 146-202 (501)
372 3zwu_A Alkaline phosphatase PH 54.4 39 0.0013 37.1 9.3 59 586-646 477-549 (592)
373 4fhn_B Nucleoporin NUP120; pro 52.5 9.5 0.00032 46.1 4.5 42 628-669 238-279 (1139)
374 2ho1_A Type 4 fimbrial biogene 51.5 1.1E+02 0.0037 28.3 11.4 37 37-74 45-81 (252)
375 2c9l_Y EB1, zebra, BZLF1 trans 50.6 7.9 0.00027 26.5 1.8 39 93-138 15-53 (63)
376 4a9v_A PHOX; hydrolase, beta-p 50.1 55 0.0019 35.6 9.4 61 585-646 476-549 (592)
377 3hym_B Cell division cycle pro 49.9 1.6E+02 0.0053 28.3 12.7 21 181-201 280-300 (330)
378 2q7f_A YRRB protein; TPR, prot 49.8 59 0.002 29.9 9.0 66 2-74 36-101 (243)
379 3elq_A Arylsulfate sulfotransf 49.1 2.9E+02 0.0098 30.0 19.0 133 585-722 207-395 (571)
380 4gyw_A UDP-N-acetylglucosamine 48.0 57 0.002 36.9 9.8 66 2-74 22-87 (723)
381 1zbp_A Hypothetical protein VP 47.6 40 0.0014 32.7 7.0 55 150-204 5-64 (273)
382 4ga2_A E3 SUMO-protein ligase 46.7 19 0.00065 31.1 4.5 66 2-74 44-109 (150)
383 2ion_A PDCD4, programmed cell 46.7 24 0.00081 31.0 5.0 62 37-112 17-78 (152)
384 1v32_A AT5G08430, hypothetical 46.0 21 0.00073 28.8 4.1 46 114-160 8-55 (101)
385 2vsy_A XCC0866; transferase, g 46.0 79 0.0027 34.3 10.4 67 1-74 1-67 (568)
386 2zux_A YESW protein; beta-prop 45.9 3.2E+02 0.011 29.5 21.1 135 474-622 231-408 (591)
387 1xnf_A Lipoprotein NLPI; TPR, 45.6 1.7E+02 0.0059 27.1 11.9 21 181-201 225-245 (275)
388 3qky_A Outer membrane assembly 44.6 1.9E+02 0.0065 26.9 12.0 69 2-74 28-99 (261)
389 2q7f_A YRRB protein; TPR, prot 44.2 1.3E+02 0.0045 27.3 10.6 66 2-74 70-135 (243)
390 3b7f_A Glycosyl hydrolase, BNR 44.1 2.7E+02 0.0092 28.2 27.2 245 463-719 22-328 (394)
391 2nsz_A Programmed cell death p 43.6 30 0.001 29.4 5.0 62 37-112 15-76 (129)
392 3hym_B Cell division cycle pro 41.9 1.7E+02 0.0059 28.0 11.5 34 40-74 67-100 (330)
393 2dgz_A Werner syndrome protein 41.3 20 0.00067 29.8 3.3 71 38-112 17-97 (113)
394 3urz_A Uncharacterized protein 40.4 1.5E+02 0.0053 26.7 10.1 70 2-74 17-98 (208)
395 2xpi_A Anaphase-promoting comp 39.7 1.4E+02 0.0048 32.1 11.3 66 2-74 386-451 (597)
396 1xnf_A Lipoprotein NLPI; TPR, 38.9 1.1E+02 0.0039 28.4 9.3 70 2-74 18-87 (275)
397 3cv0_A Peroxisome targeting si 38.6 1.6E+02 0.0054 28.2 10.6 66 2-74 34-99 (327)
398 4gco_A Protein STI-1; structur 35.9 21 0.00071 29.8 2.8 66 2-74 26-91 (126)
399 3uc1_A DNA gyrase subunit A; D 35.8 3.4E+02 0.012 27.0 24.5 209 388-613 41-278 (327)
400 3uq3_A Heat shock protein STI1 35.7 93 0.0032 28.7 8.0 66 2-74 18-89 (258)
401 3ieg_A DNAJ homolog subfamily 35.4 3.1E+02 0.011 26.4 12.8 66 2-74 133-198 (359)
402 2kck_A TPR repeat; tetratricop 35.1 54 0.0019 25.3 5.3 66 2-74 19-86 (112)
403 2y4t_A DNAJ homolog subfamily 34.6 1.9E+02 0.0064 29.6 10.8 66 2-74 39-104 (450)
404 2dba_A Smooth muscle cell asso 34.3 27 0.00091 29.2 3.4 69 2-74 41-109 (148)
405 3mkr_A Coatomer subunit epsilo 32.6 2.3E+02 0.0078 27.3 10.4 40 158-197 182-226 (291)
406 3ieg_A DNAJ homolog subfamily 32.6 3.2E+02 0.011 26.3 11.9 66 2-74 16-81 (359)
407 3cv0_A Peroxisome targeting si 32.6 1.7E+02 0.0057 28.1 9.6 34 40-74 149-182 (327)
408 2lni_A Stress-induced-phosphop 32.0 32 0.0011 27.9 3.5 66 2-74 29-94 (133)
409 1wr6_A ADP-ribosylation factor 31.9 84 0.0029 25.8 5.7 66 47-152 15-85 (111)
410 3b0b_C CENP-X, centromere prot 31.1 47 0.0016 25.6 3.7 38 118-155 6-43 (81)
411 2gw1_A Mitochondrial precursor 30.9 3E+02 0.01 28.4 11.9 65 2-74 250-314 (514)
412 4gco_A Protein STI-1; structur 29.6 48 0.0016 27.5 4.1 42 32-74 16-57 (126)
413 4fhn_B Nucleoporin NUP120; pro 29.5 1.6E+02 0.0054 35.3 10.1 34 684-718 242-275 (1139)
414 2jx3_A Protein DEK; alpha heli 28.5 89 0.0031 26.5 5.4 56 85-157 53-110 (131)
415 2b1e_A Exocyst complex compone 28.5 1E+02 0.0035 33.6 7.4 51 94-161 82-138 (564)
416 4a9v_A PHOX; hydrolase, beta-p 27.9 2.4E+02 0.0081 30.7 9.9 59 494-552 477-549 (592)
417 2xev_A YBGF; tetratricopeptide 27.9 39 0.0013 27.5 3.2 69 2-74 15-86 (129)
418 3mkr_A Coatomer subunit epsilo 27.9 1.5E+02 0.0051 28.7 8.1 82 2-107 12-93 (291)
419 1w3b_A UDP-N-acetylglucosamine 27.6 4E+02 0.014 26.3 11.8 143 3-197 149-297 (388)
420 1zi0_A DNA gyrase subunit A; b 27.3 4.5E+02 0.015 25.7 27.1 245 349-614 1-277 (307)
421 3no0_A DNA gyrase subunit A; D 27.3 4.2E+02 0.014 25.4 21.6 186 463-658 36-246 (276)
422 4i17_A Hypothetical protein; T 27.2 2.1E+02 0.007 25.9 8.7 129 2-203 20-149 (228)
423 1am7_A Lysozyme; glycosidase, 26.7 42 0.0014 29.6 3.1 35 26-60 94-128 (158)
424 2y4t_A DNAJ homolog subfamily 26.4 5.1E+02 0.017 26.0 14.8 66 2-74 156-221 (450)
425 4abn_A Tetratricopeptide repea 26.4 4.2E+02 0.014 27.6 11.9 65 2-74 115-180 (474)
426 2nxp_A Transcription initiatio 26.0 65 0.0022 28.3 4.4 83 6-88 25-113 (156)
427 2kv2_A Bloom syndrome protein; 25.6 47 0.0016 25.7 3.0 65 45-112 9-83 (85)
428 2c2l_A CHIP, carboxy terminus 24.8 3.4E+02 0.012 25.7 10.1 66 2-74 17-82 (281)
429 2e1f_A Werner syndrome ATP-dep 24.7 52 0.0018 26.6 3.2 66 43-112 15-90 (103)
430 1dul_A Signal recognition part 24.6 54 0.0019 24.3 2.9 30 121-155 33-62 (69)
431 3f7f_A Nucleoporin NUP120; nuc 23.9 1.1E+02 0.0037 34.3 6.5 37 454-490 222-259 (729)
432 2yhc_A BAMD, UPF0169 lipoprote 23.8 4E+02 0.014 24.0 13.5 187 3-205 18-218 (225)
433 3gyz_A Chaperone protein IPGC; 23.7 48 0.0016 28.8 3.1 66 2-74 49-114 (151)
434 3eiq_C Programmed cell death p 23.6 79 0.0027 32.1 5.0 63 36-112 224-286 (358)
435 1na3_A Designed protein CTPR2; 23.5 54 0.0019 24.4 3.1 66 2-74 22-87 (91)
436 3mez_B Mannose-specific lectin 23.3 3E+02 0.01 22.3 9.8 90 595-720 23-113 (113)
437 3nf1_A KLC 1, kinesin light ch 23.1 78 0.0027 30.3 4.9 69 2-74 40-121 (311)
438 3edt_B KLC 2, kinesin light ch 22.8 1.2E+02 0.0041 28.3 6.2 69 2-74 56-137 (283)
439 1elw_A TPR1-domain of HOP; HOP 22.5 52 0.0018 25.7 2.9 66 2-74 17-82 (118)
440 4eqf_A PEX5-related protein; a 22.4 3E+02 0.01 27.0 9.4 66 2-74 78-143 (365)
441 2lni_A Stress-induced-phosphop 22.4 55 0.0019 26.4 3.1 66 2-74 63-128 (133)
442 4gyw_A UDP-N-acetylglucosamine 22.3 88 0.003 35.4 5.6 62 40-110 122-183 (723)
443 1ug3_A EIF4GI, eukaryotic prot 22.2 3.9E+02 0.013 26.6 10.1 70 90-173 100-171 (339)
444 3upv_A Heat shock protein STI1 22.2 57 0.002 26.5 3.2 66 2-74 17-82 (126)
445 2zu6_B Programmed cell death p 22.1 98 0.0033 30.7 5.3 63 36-112 173-235 (307)
446 1wp5_A Topoisomerase IV; broke 22.0 5.8E+02 0.02 25.1 23.7 244 463-711 5-277 (323)
447 3ma5_A Tetratricopeptide repea 22.0 44 0.0015 26.2 2.3 51 2-58 20-70 (100)
448 1zi0_A DNA gyrase subunit A; b 21.4 5.7E+02 0.02 24.9 26.0 161 492-658 94-277 (307)
449 3fp2_A TPR repeat-containing p 20.6 4.9E+02 0.017 27.0 11.2 162 3-211 216-384 (537)
450 1suu_A DNA gyrase subunit A; t 20.6 6E+02 0.021 24.8 28.3 250 345-614 2-283 (312)
451 3zwu_A Alkaline phosphatase PH 20.2 3.6E+02 0.012 29.4 9.7 60 629-698 477-548 (592)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-47 Score=417.75 Aligned_cols=281 Identities=18% Similarity=0.216 Sum_probs=249.9
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.++|++++|+|++++|++|+.||+|++||+.++.. ...+. +|...|.+++|
T Consensus 104 l~g--h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------~~~l~--~h~~~V~~v~~ 158 (410)
T 1vyh_C 104 LSG--HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------ERTLK--GHTDSVQDISF 158 (410)
T ss_dssp EEC--CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------CEEEC--CCSSCEEEEEE
T ss_pred ecc--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------EEEEe--ccCCcEEEEEE
Confidence 455 999999999999999999999999999998774322 22222 79999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
+ +++|++|+ ||+|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|++|++||++++.++..+.+|...|.
T Consensus 159 ~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 9 88999999 9999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC--------------------CC
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QI 597 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--------------------g~ 597 (737)
++.++|++.++++|+.|+.|++||+.+++. .. ...+|. ..|.+++|+|+ |.
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 999999999999999999999999998532 22 233555 78999999996 56
Q ss_pred EEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc
Q 004683 598 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 598 ~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
++++ +.|+.|++||++++.++..+.+ |...|++++|+|+|++|++|+.||.|++||+.+++.+..+..|
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-------- 379 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-------- 379 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------
Confidence 7888 5899999999999999998875 6889999999999999999999999999999999988888643
Q ss_pred cCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 677 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 677 ~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
...+. +++|+| ++.+|++|+.||+|+||++
T Consensus 380 ~~~v~--~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 380 EHFVT--SLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEE--EEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred CCcEE--EEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 33444 999999 8999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-42 Score=399.63 Aligned_cols=365 Identities=13% Similarity=0.108 Sum_probs=282.7
Q ss_pred CcceeeccCCCCCcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec
Q 004683 319 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 398 (737)
Q Consensus 319 ~~~l~~~~gh~~~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp 398 (737)
+....++.+|.... ..+.|+|||+++|+|+.|++|+|||+... .......+.+ |.+.|.+++|+|
T Consensus 49 ~~~~~~~~~h~~~v----------~~~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~fs~ 113 (611)
T 1nr0_A 49 LTDTEIYTEHSHQT----------TVAKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISWDS 113 (611)
T ss_dssp SSCCEEECCCSSCE----------EEEEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEECT
T ss_pred cccCeEecCCCCce----------EEEEECCCCcEEEEEeCCCCEEEeECCCC---cceeeEeecc--cCCceEEEEECC
Confidence 44555566666522 22348999999999999999999998642 2222233666 899999999999
Q ss_pred CCCEEEEEECC----CcEEEeeccCCcc---------------ccccc-cee----eeeEEeecCCCeeeeeccCCCCCC
Q 004683 399 SGDFLVALTQT----ATHKLWKWQSNKQ---------------SLEEE-NVN----MESQLYQPSSKLVMTNDIAADPKD 454 (737)
Q Consensus 399 dg~~L~s~s~d----g~i~iWd~~~~~~---------------~~g~~-~~~----~~~~l~~~~~~~~~~~~~~~~h~~ 454 (737)
||++|++++.+ ++|++||...... +++.. .++ ..+++|+..++++...+. +|..
T Consensus 114 dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~ 191 (611)
T 1nr0_A 114 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTK 191 (611)
T ss_dssp TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSS
T ss_pred CCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccC
Confidence 99999999875 4788888532111 23321 222 146899998888776654 7999
Q ss_pred CeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEec-------CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC
Q 004683 455 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~ 523 (737)
.|.+++|+ |++|++|+ |++|++||+.+++....+. +|...|.+++|+|++ +|++|+.|++|++||+.++
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999 88999999 9999999999999988884 799999999999999 9999999999999999887
Q ss_pred cEEE-------------------------------------------EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEE
Q 004683 524 KTKA-------------------------------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 560 (737)
Q Consensus 524 ~~~~-------------------------------------------~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lw 560 (737)
+++. .+.+|...|.+++|+|+|++|++++.|++|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 6543 345788999999999999999999999999999
Q ss_pred eCCCCceeecee--------------------------eee--------------------------c-cc---------
Q 004683 561 DAVGWKKLCSKF--------------------------LHS--------------------------F-QT--------- 578 (737)
Q Consensus 561 dl~~~~~~~~~~--------------------------~~~--------------------------~-~~--------- 578 (737)
|+.++....... ++. + +.
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 998754321100 000 0 00
Q ss_pred --------------CCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEE
Q 004683 579 --------------GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 579 --------------~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 643 (737)
.|. ..+.+++|+|+|+++++ +.|+.|++||+.++....... ..|...|++++|||+|++|+
T Consensus 432 ~~v~~~~~~~~~~~~~~---~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp SEEEEEETTEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred ceEEEEeCCceeeeecC---CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEE
Confidence 011 45789999999999999 589999999998765422111 24789999999999999999
Q ss_pred EEecCCeEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 644 VSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 644 sgs~dg~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+++.|++|++|++.+ ++...... ..+| ...++ +++|+| |+++||+|+.|++|++|++.+++
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~-----~~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNS-----WTFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCC-----CCCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred EEcCCCCEEEEEcCCCCceeeeee-----eeec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999987 55433200 1123 34455 999999 89999999999999999998865
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-41 Score=390.02 Aligned_cols=342 Identities=14% Similarity=0.148 Sum_probs=273.4
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc--
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 422 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~-- 422 (737)
+.++|||+.+|+++ +++|++|++.. +..... +.+ |.+.|++++|||||++||+|+.|++|+|||+.+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~~----~~~~~~-~~~--h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVGS----LTDTEI-YTE--HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETTC----SSCCEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCCC----cccCeE-ecC--CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee
Confidence 44899999999988 57999999974 333332 666 999999999999999999999999999999864321
Q ss_pred -----------------ccccccee--------eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC-EEEEEe-CCe
Q 004683 423 -----------------SLEEENVN--------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGK 473 (737)
Q Consensus 423 -----------------~~g~~~~~--------~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~-~l~s~s-dg~ 473 (737)
++|..++. ..+++|| ++.....+. +|...|.+++|+ +. .|++|+ |++
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~--gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT--GQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC--CCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceec--CCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 23333322 1345666 344443333 799999999999 44 699999 999
Q ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc-------CCCcceEEEEEeCCC
Q 004683 474 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSL 545 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~-------~~~~~v~~l~~sp~g 545 (737)
|++||..+++....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. +|...|.+++|+|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 9999999999999999999999999999999 99999999999999999999988884 799999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceee-------------------------------------eecccCCCCCCCCeE
Q 004683 546 NVLVSSGADAQLCVWDAVGWKKLCSKFL-------------------------------------HSFQTGLVPETTIVN 588 (737)
Q Consensus 546 ~~l~s~s~dg~I~lwdl~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~ 588 (737)
++|++++.|++|++||+.+++....... .....+|. ..|.
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~---~~v~ 328 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN---KAIT 328 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS---SCEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC---CCEE
Confidence 9999999999999999998654322110 01234566 7899
Q ss_pred EEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecC--------------------------------------------
Q 004683 589 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP-------------------------------------------- 623 (737)
Q Consensus 589 ~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~-------------------------------------------- 623 (737)
+++|+|+|++|++ +.|+.|++||+.++.....+..
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence 9999999999998 5899999999987654332100
Q ss_pred -------------C-----------------------CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 624 -------------D-----------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 624 -------------~-----------------------~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
. .|...+.+++|+|||++|++|+.|++|++||+.++.......
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~- 487 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT- 487 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence 0 012457789999999999999999999999998875432111
Q ss_pred ccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 668 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 668 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
. +| ...+ .+++|+| |+.+||+++.|++|++|++.+
T Consensus 488 ~-----~h-~~~v--~~v~fsp-dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 488 I-----VH-PAEI--TSVAFSN-NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp E-----EC-SSCE--EEEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred c-----CC-CCce--EEEEECC-CCCEEEEEcCCCCEEEEEcCC
Confidence 1 22 3334 4999999 899999999999999999987
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.7e-40 Score=351.32 Aligned_cols=282 Identities=13% Similarity=0.167 Sum_probs=246.7
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|++++|+|+|++|++|+.||+|++||+.+.. .+.... .|...|.+++|
T Consensus 51 l~g--H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------~~~~~~--~~~~~v~~~~~ 105 (340)
T 1got_B 51 LRG--HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------KVHAIP--LRSSWVMTCAY 105 (340)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------EEEEEE--CSSSCEEEEEE
T ss_pred ecC--CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------cceEee--cCCccEEEEEE
Confidence 666 99999999999999999999999999999876432 111111 58899999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCC----cEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCc
Q 004683 462 R--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
+ ++++++|+ |+.|++||+.++ .....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+.+|..
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 9 89999999 999999999875 3566778999999999999888888999999999999999999999999999
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCC
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 613 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~ 613 (737)
.|.+++|+|+++++++|+.|+.|++||++++. ... ...+|. ..|.+++|+|++++|++ +.||.|++||++
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999999999999999999999853 233 234565 78999999999999998 589999999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
+++.+..+....+...|++++|+|+|++|++|+.||.|++||+.+++....+..| ...+. +++|+| ++.
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--------~~~v~--~~~~s~-dg~ 325 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--------DNRVS--CLGVTD-DGM 325 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE--EEEECT-TSS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--------CCcEE--EEEEcC-CCC
Confidence 9988877764444568999999999999999999999999999999988887643 34455 999999 899
Q ss_pred EEEEEECCCcEEEEe
Q 004683 694 RIALGLTNGRVHVIE 708 (737)
Q Consensus 694 ~las~s~Dg~V~iWd 708 (737)
+||+|+.||+|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999997
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=349.13 Aligned_cols=284 Identities=17% Similarity=0.206 Sum_probs=248.3
Q ss_pred cCCCCCCCCeEEEEEecC----CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE
Q 004683 382 LPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS 457 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspd----g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~ 457 (737)
+.+ |.+.|++++|+|+ +.+|++|+.|++|+||++..... .+.. ...+|...|.
T Consensus 28 ~~~--H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------~~~~--~l~gh~~~v~ 84 (321)
T 3ow8_A 28 EQA--HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------DLQW--SLEGHQLGVV 84 (321)
T ss_dssp TTS--SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------EEEE--EECCCSSCEE
T ss_pred ccc--CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------eeee--eeccCCCCEE
Confidence 445 9999999999985 67999999999999999764211 0111 1127999999
Q ss_pred EEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC
Q 004683 458 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 458 ~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~ 533 (737)
+++|+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .|++|+.|+.|++||+++++....+..|.
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 99999 88999999 9999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~ 612 (737)
..|.+++|+|+|+++++++.||.|++||+++++ .+. ...+|. .+|.+++|+|++++|+++ .|+.|++||+
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence 999999999999999999999999999999853 333 234565 789999999999999985 8999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
++++....+.+ |...|.+++|+|++++|++|+.|++|++||+.+++++..+..| ...++ +++|+| ++
T Consensus 236 ~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--------~~~v~--~v~~s~-~g 302 (321)
T 3ow8_A 236 QHANLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--------QDQVW--GVKYNG-NG 302 (321)
T ss_dssp TTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE--EEEECT-TS
T ss_pred CCcceeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--------CCcEE--EEEECC-CC
Confidence 99999888865 7899999999999999999999999999999999998888643 34455 999999 89
Q ss_pred CEEEEEECCCcEEEEecC
Q 004683 693 NRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~ 710 (737)
.+|++++.||+|+|||..
T Consensus 303 ~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCeEEEEeCC
Confidence 999999999999999963
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-39 Score=372.11 Aligned_cols=326 Identities=17% Similarity=0.232 Sum_probs=277.0
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc--
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 422 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~-- 422 (737)
..++|||+++++++.|+.|++|+.. +.+... +.+ |...|.+++|+|+|++|++++.|++|++|+......
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~~-~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~ 298 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNRN-----GQLLQT-LTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT 298 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-----SCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCC-----CCEEEE-Eec--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEE
Confidence 4488999999999999999999965 333333 566 899999999999999999999999999999754322
Q ss_pred --------------cccccceee----eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC
Q 004683 423 --------------SLEEENVNM----ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 481 (737)
Q Consensus 423 --------------~~g~~~~~~----~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~ 481 (737)
+++...... .+++|+.....+... . +|...|.+++|+ ++++++++ ||.|++||. +
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~ 374 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 374 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-T
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE-e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-C
Confidence 233333222 368999876655432 2 699999999999 88999999 899999995 5
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEE
Q 004683 482 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 560 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lw 560 (737)
++.+..+.+|...|.+++|+|++ .|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w 453 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEE
Confidence 78889999999999999999999 9999999999999995 578888999999999999999999999999999999999
Q ss_pred eCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC
Q 004683 561 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 639 (737)
Q Consensus 561 dl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 639 (737)
|... ..+. ...+|. ..|.+++|+|++++|++ +.|+.|++||. +++++..+.+ |...|++++|+|+|
T Consensus 454 ~~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 454 NRNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDG 520 (577)
T ss_dssp ETTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTS
T ss_pred ECCC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCCC
Confidence 9764 2333 233555 78999999999999998 58999999996 6888888875 68999999999999
Q ss_pred CEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEe
Q 004683 640 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd 708 (737)
++|++++.||.|++||. +++.+..+..| ...|. +++|+| |+++|+|++.||+|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h--------~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGH--------SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECC--------SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCC--------CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 99999999999999996 67777777643 34455 999999 899999999999999997
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-39 Score=344.20 Aligned_cols=289 Identities=16% Similarity=0.194 Sum_probs=245.5
Q ss_pred cceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec
Q 004683 320 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 398 (737)
Q Consensus 320 ~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp 398 (737)
.+..++.||.. +.+ +.|+|||+++++++.||+|++||... +..... ++. |...|.+++|+|
T Consensus 46 ~~~~~l~gH~~~v~~-----------~~~s~d~~~l~s~s~Dg~v~iWd~~~----~~~~~~-~~~--~~~~v~~~~~s~ 107 (340)
T 1got_B 46 RTRRTLRGHLAKIYA-----------MHWGTDSRLLLSASQDGKLIIWDSYT----TNKVHA-IPL--RSSWVMTCAYAP 107 (340)
T ss_dssp CEEEEECCCSSCEEE-----------EEECTTSSEEEEEETTTEEEEEETTT----CCEEEE-EEC--SSSCEEEEEECT
T ss_pred hhheeecCCCCceEE-----------EEECCCCCEEEEEeCCCcEEEEECCC----CCcceE-eec--CCccEEEEEECC
Confidence 34556667766 333 23789999999999999999999884 333333 555 889999999999
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI 476 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~v 476 (737)
+|++|++|+.|+.|++|++.+... . ......+. +|...|.++.|+ ++.+++++ |++|++
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~-----~------------~~~~~~~~--~h~~~v~~~~~~~~~~l~s~s~d~~i~~ 168 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREG-----N------------VRVSRELA--GHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSB-----S------------CEEEEEEE--CCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECccCCC-----c------------ceeEEEec--CCCccEEEEEECCCCcEEEEECCCcEEE
Confidence 999999999999999999874321 0 01111111 699999999999 77788888 999999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||++++.++..+.+|...|.+++|+|+++++++|+.||
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeeccc-CCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEE
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 633 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~ 633 (737)
+|++||++++.. +..+.. .+. ..|.+++|+|+|++++++ .|+.|++||+.+++.+..+.+ |...|.++
T Consensus 249 ~v~iwd~~~~~~-----~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~ 318 (340)
T 1got_B 249 TCRLFDLRADQE-----LMTYSHDNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCL 318 (340)
T ss_dssp CEEEEETTTTEE-----EEEECCTTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEE
T ss_pred cEEEEECCCCcE-----EEEEccCCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEE
Confidence 999999998532 221211 122 479999999999999984 899999999999999888865 78999999
Q ss_pred EEccCCCEEEEEecCCeEEEEE
Q 004683 634 TYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 634 ~~sp~~~~l~sgs~dg~I~vwd 655 (737)
+|+|+|.+|++|+.||.|+|||
T Consensus 319 ~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999996
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.8e-40 Score=353.63 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=226.6
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..+++.+ +.++.+.....|++.. .. ..+ |...|.+++|||||++|++||.|.. ++||..
T Consensus 13 ~g~~~~~-~~~~g~~~~~~w~~p~----~~-----p~~--H~~~V~~v~fSpDG~~las~s~d~~-~~wd~~-------- 71 (357)
T 4g56_B 13 LGTENLY-FQSNGSSKGSAWGRPV----TA-----PAC--MEVQIGAVRYRRDGALLLAASSLSS-RTWGGS-------- 71 (357)
T ss_dssp -------------------------------------C--CCSEEEEEEECSSSCEEEEEECSSS-SSCCEE--------
T ss_pred CCccceE-EecCCCccccccCCCC----CC-----ccc--ccCCEEEEEECCCCCEEEEEcCCCC-ccccCe--------
Confidence 3444444 3334456778898763 11 122 8999999999999999999998432 334311
Q ss_pred cceeeeeEEeecCCCeeeeeccC--CCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEE----EecCCCCCeEEE
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYF 498 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~--~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~----~~~~~~~~v~~~ 498 (737)
+++|+..++........ .+|...|.+++|+ .+.+++++ ||+|++||+.+++... ...+|...|.++
T Consensus 72 ------v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 72 ------IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp ------EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred ------EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 12344333322111110 1588999999999 66666677 9999999998876543 334899999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
+|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++. .+++++.||.|++||+++++......
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---- 221 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---- 221 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC----
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee----
Confidence 999999 999999999999999999999999999999999999999875 78999999999999999854322111
Q ss_pred ccCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEE
Q 004683 577 QTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKV 653 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~sgs~dg~I~v 653 (737)
...+. ..+.+++|+|++ .++++ +.|+.|++||+++++++..+.. |...|++++|+|++ ++|++|+.||+|+|
T Consensus 222 ~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 222 FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 12233 679999999985 56776 4899999999999999988865 68899999999987 68999999999999
Q ss_pred EEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
||+.+++.+..+ +| ...|+ +++|+|.++.+||+|+.||+|++|++.+..
T Consensus 297 wd~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999877654 33 33455 999999778999999999999999997654
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-39 Score=339.70 Aligned_cols=284 Identities=17% Similarity=0.278 Sum_probs=241.8
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++|++|+.||+|++||+.++ ..+..+. .|..+|.+++|
T Consensus 9 ~~~--h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---------------------~~~~~~~--~~~~~v~~~~~ 63 (304)
T 2ynn_A 9 FSN--RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---------------------VEVRSIQ--VTETPVRAGKF 63 (304)
T ss_dssp EEE--ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------------------EEEEEEE--CCSSCEEEEEE
T ss_pred ecC--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------------------ceeEEee--ccCCcEEEEEE
Confidence 555 9999999999999999999999999999987642 2222222 68899999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcce
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 536 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v 536 (737)
+ +++|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.|++|++||++++ .....+.+|...|
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 9 89999999 9999999999999999999999999999999999 9999999999999999887 4567789999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec--CCCEEEE-EecCcEEEEeC
Q 004683 537 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 537 ~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~-~~dg~I~iwd~ 612 (737)
.+++|+| ++..+++|+.|++|++||++... +...+..++. ..+..+.|+| ++.+|++ +.|+.|++||+
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence 9999999 67899999999999999998743 2222344444 6789999987 6778888 58999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
++++++.++.+ |...|.+++|+|++++|++|+.||+|++||+.+++....+..+ ...++ +++|+|.++
T Consensus 216 ~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~ 283 (304)
T 2ynn_A 216 QTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHPTGR 283 (304)
T ss_dssp TTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--------SSSEE--EEEECTTCG
T ss_pred CCCccceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--------CccEE--EEEECCCCC
Confidence 99999999876 6899999999999999999999999999999999998888643 33455 999999443
Q ss_pred C-EEEEEECCCcEEEEecCC
Q 004683 693 N-RIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 693 ~-~las~s~Dg~V~iWd~~~ 711 (737)
. ++|+|++|| +.+|++.+
T Consensus 284 ~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 284 KNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp GGCEEEEETTE-EEEEECC-
T ss_pred ceEEEEecCCc-eEEEEecc
Confidence 3 577777654 77887754
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.8e-40 Score=348.23 Aligned_cols=287 Identities=15% Similarity=0.165 Sum_probs=230.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCC-----CeeeeeccCCCCCCCeEEEEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-----KLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~-----~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|...|.+++|||||++|++++ |+++++||... .+|+... +.+.... .+...|.+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL--------------WLFKDPCAAPNEGFCSAGV---QTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE--------------EEESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee--------------eeeccccccCCcceeeeee---ccCCCEEEEEE
Confidence 677899999999999988887 78899997431 1222111 0011100 36778999999
Q ss_pred e-CCEEEEEe-CCeEEEEECCCCcEEEE----ecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc
Q 004683 462 R-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 462 s-~~~l~s~s-dg~i~vwd~~~~~~~~~----~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
+ ++.+++|+ ||+|++||+.+++.... ..+|...|++++|+|+| +|++|+.|++|++||+.+++++..+.+|..
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9 88899999 99999999998875543 34899999999999999 999999999999999999999999999999
Q ss_pred ceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecc-cCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEE
Q 004683 535 RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVY 610 (737)
Q Consensus 535 ~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iw 610 (737)
.|.+++|+|++. ++++++.|++|++||+++++.. ..+. ..+. ..+.+++|+|++ +++++ +.||.|++|
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----SQIGCSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----EECC----C---CCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred ceEEEEecCCCCCceeeecccccccccccccccee-----eeeecceee---ccceeeeecCCCCcceEEeccCCcEEEE
Confidence 999999999884 7899999999999999985432 2222 1222 578999999965 67777 489999999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
|+++++++.++.+ |...|++++|+|++ ++|++|+.|++|+|||+.++++.. +. || ...|+ +++|+|
T Consensus 243 d~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H-~~~V~--~v~~sp 309 (344)
T 4gqb_B 243 DTKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AH-RDFVR--DATWSP 309 (344)
T ss_dssp ESCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CC-SSCEE--EEEECS
T ss_pred ECCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CC-CCCEE--EEEEeC
Confidence 9999999999876 68999999999998 589999999999999999998653 33 43 33455 999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 004683 690 LEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
++..+|++|+.||+|++|++.+.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCeEEEEEcCCCeEEEEECCCC
Confidence 54567889999999999999764
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=341.96 Aligned_cols=291 Identities=18% Similarity=0.188 Sum_probs=246.1
Q ss_pred ceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC
Q 004683 321 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 321 ~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd 399 (737)
..+...+|.. +.++.|.+. ..+++..+++|+.|++|++|++.. ........+.+ |...|.+++|+|+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~-------~~~~~~~l~tgs~D~~v~vW~~~~---~~~~~~~~l~g--h~~~v~~~~~~~~ 91 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTN-------KKENSETVVTGSLDDLVKVWKWRD---ERLDLQWSLEG--HQLGVVSVDISHT 91 (321)
T ss_dssp EEEETTSSSSCEEEEEEC--------------CEEEEEETTSCEEEEEEET---TEEEEEEEECC--CSSCEEEEEECSS
T ss_pred eeeecccCCCcEEEEEEecC-------CCCCCCEEEEEcCCCCEEEEECCC---CCeeeeeeecc--CCCCEEEEEECCC
Confidence 3344557777 666665543 235688999999999999999874 12223334677 9999999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
+.++++++.|++|++||+.++. .+.... .|...+.+++|+ +++|++++ +|.|++
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~---------------------~~~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGK---------------------QIKSID--AGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTE---------------------EEEEEE--CCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCC---------------------EEEEEe--CCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999999999999877432 222111 577888999999 89999999 999999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 555 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg 555 (737)
||+.+++....+..|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEE
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~ 634 (737)
.|++||++++.. .. ...+|. ..|.+++|+|++++|++ +.|+.|++||+.+++++.++.. |...|.+++
T Consensus 229 ~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~~v~~v~ 297 (321)
T 3ow8_A 229 YIKIYDVQHANL-----AG-TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWGVK 297 (321)
T ss_dssp CEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEE
T ss_pred eEEEEECCCcce-----eE-EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCCcEEEEE
Confidence 999999998432 33 234566 78999999999999998 5899999999999999999865 689999999
Q ss_pred EccCCCEEEEEecCCeEEEEEcC
Q 004683 635 YSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 635 ~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
|+|++++|++++.||.|++||..
T Consensus 298 ~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 298 YNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999964
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-39 Score=337.75 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=245.5
Q ss_pred ecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 381 LLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 381 ~l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
++.| |.+.|.+++|+|++ ++|++|+.|++|++|++..... ..+..+..+. +|...|.++
T Consensus 12 ~l~g--H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~----------------~~~~~~~~~~--~h~~~v~~~ 71 (319)
T 3frx_A 12 TLEG--HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ----------------KFGVPVRSFK--GHSHIVQDC 71 (319)
T ss_dssp EECC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT----------------EEEEEEEEEE--CCSSCEEEE
T ss_pred EEcc--ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc----------------cccccceEEe--CCcccEEEE
Confidence 3666 99999999999965 8999999999999999763221 0011122222 799999999
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcc
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 535 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~ 535 (737)
+|+ ++++++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||++ +.++..+.+|...
T Consensus 72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~ 150 (319)
T 3frx_A 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150 (319)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCc
Confidence 999 89999999 9999999999999999999999999999999999 99999999999999986 5678889999999
Q ss_pred eEEEEEeCC------CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEE
Q 004683 536 ITCLAYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 608 (737)
Q Consensus 536 v~~l~~sp~------g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~ 608 (737)
|.++.|+|. +..+++++.|+.|++||+++.. ... ...+|. ..|.+++|+|+|++|++ +.||.|+
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhe-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 999999985 4589999999999999999843 222 234566 79999999999999998 5899999
Q ss_pred EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEc
Q 004683 609 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
+||+.+++++..+.. ...|.+++|+|++.++++++.+ .+++|++..+.....+..+...... .....+.+++|+
T Consensus 222 iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s 295 (319)
T 3frx_A 222 LWNLAAKKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWS 295 (319)
T ss_dssp EEETTTTEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG--GGCCCEEEEEEC
T ss_pred EEECCCCcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc--CcCcceeEEEEC
Confidence 999999999888864 5689999999999999988754 5999999998877766533111111 111234599999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 004683 689 PLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
| |+++|++|+.||.|+||++.++
T Consensus 296 p-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 296 A-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-TSSEEEEEETTSCEEEEEEEEC
T ss_pred C-CCCEEEEeecCceEEEEEEeec
Confidence 9 8999999999999999999764
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=354.23 Aligned_cols=381 Identities=18% Similarity=0.238 Sum_probs=246.6
Q ss_pred CccchhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc--HHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHHHH
Q 004683 136 SFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQI 213 (737)
Q Consensus 136 ~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l 213 (737)
-+...+++|++|+|+|||+|+||.+++.+|++|.++.++ ...+...++++.|+.++++-..+..+.
T Consensus 2 ~~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~------------ 69 (410)
T 1vyh_C 2 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE------------ 69 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHH------------
Confidence 345689999999999999999999999999999998875 456667788888888877543331100
Q ss_pred HHHHHHHHHhhcccCcchHHHhhhHHHHHHHhhccCcccccccCCCCCChHHHHHHHHHhhccccceeccccCCCCCccc
Q 004683 214 QRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETI 293 (737)
Q Consensus 214 ~~q~~lEll~~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~ 293 (737)
.+.-+ ..+.+.. ..+ + . +...-....+
T Consensus 70 --~~~~~-------------------------------~~~~~~~--~~~-----~-~-----~~~~~~~~~~------- 96 (410)
T 1vyh_C 70 --SKLNE-------------------------------AKEEFTS--GGP-----L-G-----QKRDPKEWIP------- 96 (410)
T ss_dssp --------------------------------------------------------------------CCCCC-------
T ss_pred --HHHHH-------------------------------HHHHHhc--cCC-----c-c-----ccCCcccccc-------
Confidence 00000 0000000 000 0 0 0000000000
Q ss_pred cccCCccccccccccccccCCCCCCCcceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccC
Q 004683 294 SLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN 372 (737)
Q Consensus 294 s~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~ 372 (737)
.......+.||.. +.+ +.|+|++.++++|+.|++|++||+..
T Consensus 97 ------------------------~~~~~~~l~gh~~~V~~-----------~~~~p~~~~l~s~s~Dg~i~vwd~~~-- 139 (410)
T 1vyh_C 97 ------------------------RPPEKYALSGHRSPVTR-----------VIFHPVFSVMVSASEDATIKVWDYET-- 139 (410)
T ss_dssp ------------------------CSSCSCEEECCSSCEEE-----------EEECSSSSEEEEEESSSCEEEEETTT--
T ss_pred ------------------------CCCceEeecccCCcEEE-----------EEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 0111233445554 333 33789999999999999999999984
Q ss_pred CCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCC
Q 004683 373 EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP 452 (737)
Q Consensus 373 ~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h 452 (737)
+.+... +.+ |.+.|.+++|+|+|++|++|+.|++|++||+.+. .++..+. +|
T Consensus 140 --~~~~~~-l~~--h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~---------------------~~~~~~~--~h 191 (410)
T 1vyh_C 140 --GDFERT-LKG--HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF---------------------ECIRTMH--GH 191 (410)
T ss_dssp --CCCCEE-ECC--CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---------------------CEEECCC--CC
T ss_pred --CcEEEE-Eec--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------------ceeEEEc--CC
Confidence 444443 666 9999999999999999999999999999987642 2222222 79
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE
Q 004683 453 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~ 528 (737)
...|.+++|+ ++++++|+ |++|++||+.++.++..+.+|...|.++.++|++ .+++|+.|+.|++||+.++++...
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 9999999999 88999999 9999999999999999999999999999999999 999999999999999999999999
Q ss_pred EcCCCcceEEEEEeCC--------------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 529 LKGHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~--------------------g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
+.+|...|.+++|+|+ |.++++|+.|+.|++||++++. .+. ...+|. ..|.
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-----~~~-~~~~h~---~~v~ 342 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-----CLM-TLVGHD---NWVR 342 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-----EEE-EEECCS---SCEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-----eEE-EEECCC---CcEE
Confidence 9999999999999996 6789999999999999999853 333 234566 7899
Q ss_pred EEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 589 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 589 ~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+++|+|+|++|++ +.|+.|++||+.+++++..+.. |...|++++|+|++.+|++|+.||+|++|+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999998 5899999999999999988865 68899999999999999999999999999863
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-39 Score=343.75 Aligned_cols=282 Identities=14% Similarity=0.179 Sum_probs=243.8
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |.+.|++++|+|+|++|+|||.||+|++||..+... ..... .|...|.+++|
T Consensus 60 l~g--H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------~~~~~--~~~~~v~~~~~ 114 (354)
T 2pbi_B 60 LKG--HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------EHAVT--MPCTWVMACAY 114 (354)
T ss_dssp EEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEE--CSSSCCCEEEE
T ss_pred ecC--CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------ceEEe--cCCCCEEEEEE
Confidence 666 999999999999999999999999999998764221 11111 47788999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCC------cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC
Q 004683 462 R--GSHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 531 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~ 531 (737)
+ |.++++|+ |+.+++|++... .....+.+|...|.+++|+|++ .|++|+.|++|++||+++++++..+.+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 9 99999999 999999998643 3456677899999999999999 999999999999999999999999999
Q ss_pred CCcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEE
Q 004683 532 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 608 (737)
Q Consensus 532 ~~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~ 608 (737)
|...|.+++|+| +|+++++|+.||.|++||++++. .+. ...+|. ..|.+++|+|++.++++ +.|+.|+
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 999999999987 57899999999999999999853 333 234565 78999999999999998 5899999
Q ss_pred EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEc
Q 004683 609 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
+||+++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+..| ...+. +++|+
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--------~~~v~--~l~~s 335 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--------ENRVS--TLRVS 335 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--------SSCEE--EEEEC
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--------CCcEE--EEEEC
Confidence 999999888877765444568999999999999999999999999999999888777533 33455 99999
Q ss_pred cCCCCEEEEEECCCcEEEEe
Q 004683 689 PLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd 708 (737)
| ++.+||+|+.||+|+||+
T Consensus 336 p-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 P-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp T-TSSCEEEEETTSEEEEEC
T ss_pred C-CCCEEEEEcCCCCEEecC
Confidence 9 899999999999999996
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=341.26 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=237.8
Q ss_pred cCCCCCCC-CeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~-~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
+++ |.+ .|++++|+|+|++||+|+.|++|+||++.+... ........+|...|.+++
T Consensus 11 ~~~--h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--------------------~~~~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 11 VPA--HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--------------------ICKSVLSEGHQRTVRKVA 68 (345)
T ss_dssp ECC--STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--------------------EEEEEECSSCSSCEEEEE
T ss_pred ecC--CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--------------------eeeeeeccccCCcEEEEE
Confidence 666 777 999999999999999999999999999764311 000111126999999999
Q ss_pred Ee--CCEEEEEe-CCeEEEEECCCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc---EEEEEcC
Q 004683 461 LR--GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG 531 (737)
Q Consensus 461 ~s--~~~l~s~s-dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~---~~~~l~~ 531 (737)
|+ +++|++|+ |++|++||+.++ +++..+.+|...|.+++|+|++ +|++|+.|+.|++||+.++. ++..+.+
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99 89999999 999999999876 4677889999999999999999 99999999999999998763 4667888
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEE
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 610 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iw 610 (737)
|...|.+++|+|+++++++++.|+.|++||.+++... ... ...+|. ..|.+++|+|+|++|++ +.|++|++|
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 9999999999999999999999999999999874322 222 234666 79999999999999998 589999999
Q ss_pred eCCCC---------------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee----EEEEeccccc
Q 004683 611 EAPTL---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYA 671 (737)
Q Consensus 611 d~~~~---------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~----~~~~~~~~~~ 671 (737)
|.... .++..+.+ .|...|.+++|+|++..|++++.|+.|++|+...+.. ...+..+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~--~ 298 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH--L 298 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE--E
T ss_pred ccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee--e
Confidence 96321 23334433 3688999999999999999999999999999876531 1111111 1
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
..+| ...|+ +++|+|+++.+||+|+.||+|++|++.+++...
T Consensus 299 ~~~h-~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 299 HQAH-SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTSS-SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cccc-cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1233 33455 999999434699999999999999999877543
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-38 Score=330.29 Aligned_cols=289 Identities=19% Similarity=0.237 Sum_probs=246.6
Q ss_pred eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE
Q 004683 378 RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS 457 (737)
Q Consensus 378 ~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~ 457 (737)
....+.+ |...|.+++|+|+|++|++|+.||.|++|+..++. ....+. +|...|.
T Consensus 15 ~~~~~~g--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------~~~~~~--~h~~~v~ 69 (312)
T 4ery_A 15 LKFTLAG--HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------FEKTIS--GHKLGIS 69 (312)
T ss_dssp EEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------EEEEEC--CCSSCEE
T ss_pred eEEEEcc--cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------cchhhc--cCCCceE
Confidence 3444676 99999999999999999999999999999876322 222222 6999999
Q ss_pred EEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC
Q 004683 458 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 458 ~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~ 533 (737)
+++|+ +++|++++ ||.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++.+..+..|.
T Consensus 70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 99999 88999999 9999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~ 612 (737)
.+|.+++|+|+++++++++.||.|++||+++++. +..+...+. ..+..++|+|+++++++ +.|+.|++||+
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999999999999999999999998532 332333443 67999999999999998 58999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
++++++..+.++..........++ +++.+|++|+.||.|++||+.+++.+..+..| ...+ .+++|+| +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--------~~~v--~~~~~~p-~ 290 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--------TDVV--ISTACHP-T 290 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--------SSCE--EEEEECS-S
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--------CCcE--EEEeecC-c
Confidence 999998888764322223333444 68899999999999999999999998888643 3334 4999999 7
Q ss_pred CCEEEEEE--CCCcEEEEecC
Q 004683 692 PNRIALGL--TNGRVHVIEPL 710 (737)
Q Consensus 692 ~~~las~s--~Dg~V~iWd~~ 710 (737)
+.++++++ .||+|++|+..
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999997 69999999874
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9e-38 Score=356.35 Aligned_cols=331 Identities=17% Similarity=0.224 Sum_probs=276.1
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc-
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ- 422 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~- 422 (737)
...++|+|+.+++++.|+.|++|+.. +.+... +.+ |...|.+++|+|+|++|++++.|++|++|+......
T Consensus 185 ~~~~~~~~~~l~~~~~d~~v~~w~~~-----~~~~~~-~~~--~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~ 256 (577)
T 2ymu_A 185 GVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQT-LTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 256 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT-----SCEEEE-EEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred eeeecCCCCEEEEEcCCCEEEEEeCC-----CcEEEE-Eec--CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE
Confidence 34588999999999999999999965 333332 555 899999999999999999999999999999654322
Q ss_pred ---------------cccccceee----eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECC
Q 004683 423 ---------------SLEEENVNM----ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 480 (737)
Q Consensus 423 ---------------~~g~~~~~~----~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~ 480 (737)
++|...... .+++|+... .....+. +|...|.+++|+ ++.+++++ ||.|++||..
T Consensus 257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 233333222 358899654 4444433 799999999999 88999999 9999999976
Q ss_pred CCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 004683 481 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 559 (737)
Q Consensus 481 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~l 559 (737)
+..+..+.+|...|.+++|+|++ .+++|+.|+.|++||. +++.+..+.+|...|.+++|+|+|+++++++.|+.|++
T Consensus 334 -~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 334 -GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp -SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred -CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 55677888999999999999999 9999999999999995 57888899999999999999999999999999999999
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccC
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~ 638 (737)
||... ..+. ...+|. ..|++++|+|++++|++ +.|+.|++||. +++.+..+.+ |...|++++|+|+
T Consensus 412 ~~~~~------~~~~-~~~~~~---~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd 478 (577)
T 2ymu_A 412 WNRNG------QLLQ-TLTGHS---SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD 478 (577)
T ss_dssp ECTTC------CEEE-EEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred EeCCC------CEEE-EecCCC---CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC--CCCCEEEEEEcCC
Confidence 99754 2333 234555 78999999999999998 58999999997 5677777765 6889999999999
Q ss_pred CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 639 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 639 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+++|++++.|+.|++||. +++.+..+..| ...+. +++|+| ++++||+++.||.|++||. +++
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h--------~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTGH--------SSSVR--GVAFSP-DGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEECC--------SSCEE--EEEECT-TSSCEEEEETTSEEEEECT-TSC
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeCC--------CCCEE--EEEEcC-CCCEEEEEECcCEEEEEeC-CCC
Confidence 999999999999999995 67777777643 33454 999999 8999999999999999996 444
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-39 Score=348.69 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=244.9
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.| |.+.|++++|+|+|++|++|+.|++|+|||+.++. ....+. .|...|.+++|
T Consensus 62 l~g--H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------~~~~~~--~h~~~v~~~~~ 116 (380)
T 3iz6_a 62 LQG--HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------KTHAIK--LHCPWVMECAF 116 (380)
T ss_dssp ECC--CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------EEEEEE--CCCTTCCCCEE
T ss_pred ccc--cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------cceEEe--cCCCCEEEEEE
Confidence 777 99999999999999999999999999999876422 222222 68999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCc-------EEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEE
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l 529 (737)
+ |+++++|+ |+.|++||+.+.. ....+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++.+..+
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 9 89999999 9999999986532 345677999999999999986 7999999999999999999998887
Q ss_pred -----cCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-
Q 004683 530 -----KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 602 (737)
Q Consensus 530 -----~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~- 602 (737)
.+|...|.+++|++ +++++++|+.|++|++||++.. ...+. ...+|. ..|.+++|+|++++|+++
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----~~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----SRAVR-TYHGHE---GDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT----CCCCE-EECCCS---SCCCEEEECTTSSEEEEEC
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC----CcceE-EECCcC---CCeEEEEEecCCCeEEEEc
Confidence 67899999999987 8899999999999999999852 12333 345666 789999999999999985
Q ss_pred ecCcEEEEeCCCCceeEEecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCcc
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 677 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~ 677 (737)
.|++|++||++++..+..+.... +...|++++|+|+|++|++|+.||.|++||+.+++....+... ..+| .
T Consensus 269 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~h-~ 344 (380)
T 3iz6_a 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL---QNSH-E 344 (380)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS---CSSC-C
T ss_pred CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc---cCCC-C
Confidence 89999999999999888775432 1235899999999999999999999999999999887766321 1133 3
Q ss_pred CceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 678 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 678 ~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
..+. +++|+| ++.+|++|+.||+|+||++...+
T Consensus 345 ~~v~--~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRIS--CLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCC--EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CceE--EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 4455 999999 89999999999999999997654
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-38 Score=337.25 Aligned_cols=290 Identities=14% Similarity=0.124 Sum_probs=242.4
Q ss_pred ceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC
Q 004683 321 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 321 ~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd 399 (737)
...++.||.. +.+ +.|+|||+++++|+.|++|++||... +..... +.. |...|.+++|+|+
T Consensus 56 ~~~~l~gH~~~V~~-----------~~~s~d~~~l~s~s~Dg~v~vWd~~~----~~~~~~-~~~--~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 56 TRRTLKGHGNKVLC-----------MDWCKDKRRIVSSSQDGKVIVWDSFT----TNKEHA-VTM--PCTWVMACAYAPS 117 (354)
T ss_dssp EEEEEECCSSCEEE-----------EEECTTSSEEEEEETTSEEEEEETTT----CCEEEE-EEC--SSSCCCEEEECTT
T ss_pred EEEEecCCCCeEEE-----------EEECCCCCEEEEEeCCCeEEEEECCC----CCcceE-Eec--CCCCEEEEEECCC
Confidence 4455667776 433 33789999999999999999999874 333332 444 7889999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
|.+|++|+.|+.+++|++..... .+.. ....... +|...|.+++|+ +..+++++ |++|++
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~-~~~~--------------~~~~~~~--~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKN-ENMA--------------AKKKSVA--MHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTT-CCSG--------------GGCEEEE--ECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCEEEEeeCCCCEEEEEEecccc-cccc--------------ccceeee--ccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 99999999999999999764321 0000 0000011 599999999999 77999999 999999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcC--CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 553 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~--~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~ 553 (737)
||+.+++.+..+.+|...|.+++|+| ++ .|++|+.||.|++||+++++++..+.+|...|.+++|+|++.++++++.
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 99999999999999999999999987 46 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeceeeeeccc-CCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeE
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 631 (737)
|++|++||++.... +..+.. .+. ..+.+++|+|+|.+++++ .|+.|++||+.+++.+..+.+ |...|+
T Consensus 261 D~~v~lwd~~~~~~-----~~~~~~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~--h~~~v~ 330 (354)
T 2pbi_B 261 DATCRLYDLRADRE-----VAIYSKESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG--HENRVS 330 (354)
T ss_dssp TSCEEEEETTTTEE-----EEEECCTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC--CSSCEE
T ss_pred CCeEEEEECCCCcE-----EEEEcCCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC--CCCcEE
Confidence 99999999998532 221111 112 478999999999999985 899999999999998888865 789999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEE
Q 004683 632 YATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
+++|+|+|++|++|+.||+|+||+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999996
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.1e-38 Score=329.57 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=239.5
Q ss_pred eeccCCCC-CcceeeeCCCCccccccCCC-CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCC
Q 004683 323 DASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 400 (737)
Q Consensus 323 ~~~~gh~~-~~s~l~~~~~~~~~~~~spd-g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg 400 (737)
.++.||.. +.++. ++|+ ++++++|+.|++|++|++.............+.+ |...|.+++|+|+|
T Consensus 11 ~~l~gH~~~V~~l~-----------~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~dg 77 (319)
T 3frx_A 11 GTLEGHNGWVTSLA-----------TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--HSHIVQDCTLTADG 77 (319)
T ss_dssp EEECCCSSCEEEEE-----------ECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--CSSCEEEEEECTTS
T ss_pred EEEccccceEEEEE-----------ccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC--CcccEEEEEECCCC
Confidence 45567776 44432 5665 4899999999999999987421111111223666 99999999999999
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEE
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 477 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vw 477 (737)
++|++|+.|++|++||+.++ +.+..+. +|...|.+++|+ +.++++|+ |++|++|
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~---------------------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATG---------------------ETYQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp SEEEEEETTSEEEEEETTTT---------------------EEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCEEEEEECCCC---------------------CeeEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999987643 2222222 799999999999 88999999 9999999
Q ss_pred ECCCCcEEEEecCCCCCeEEEEEcC------CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEE
Q 004683 478 SLETFQTLATFANPPPIATYFILLP------QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 550 (737)
Q Consensus 478 d~~~~~~~~~~~~~~~~v~~~~~s~------~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s 550 (737)
|+. +.++..+.+|...|.++.|+| ++ .+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++
T Consensus 135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence 996 677888899999999999998 45 7999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCC------
Q 004683 551 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------ 624 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~------ 624 (737)
++.||.|++||+.+++ .+..+. .+ ..|.+++|+|++.+++++.++.+++|++..+..+..+...
T Consensus 214 ~~~dg~i~iwd~~~~~-----~~~~~~-~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 214 AGKDGEIMLWNLAAKK-----AMYTLS-AQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp EETTCEEEEEETTTTE-----EEEEEE-CC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred EeCCCeEEEEECCCCc-----EEEEec-CC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccccc
Confidence 9999999999999853 333232 22 5799999999999999988888999999887777666432
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 625 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 625 ~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
.+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 13567899999999999999999999999998764
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-37 Score=327.22 Aligned_cols=315 Identities=14% Similarity=0.161 Sum_probs=260.7
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..++|||+.++++..++.+..|.... ...... ..+ |...|.+++|+|+|++|++++ ||.|++|++.....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~--h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~-- 84 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR---HARQIN--TLN--HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN-- 84 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS---EEEEEE--EEC--CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--
T ss_pred EEECCCCCEEEeecCCCcEeccccCC---ccccce--ecc--CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--
Confidence 44899999999999888877775542 122222 234 899999999999999999999 99999999875322
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc--EEEEecCCCCCeEEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI 499 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~ 499 (737)
... .......+|...|.+++|+ ++++++++ ||.|++||+.+++ ....+..|...|.+++
T Consensus 85 ---~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 85 ---KSP-------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp ---CSC-------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred ---eee-------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 000 0000111588999999999 88999999 9999999999887 6667789999999999
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
|+|++ .+++++.||.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++. +..+.
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~- 222 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----LQQHD- 222 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE-
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----Eeeec-
Confidence 99999 999999999999999999999999999999999999999999999999999999999998543 22222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 579 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+. ..+.+++|+|++++++++ .++.|++||+++++.. .+. .|...|.+++|+|++++|++++.||.|++||+.
T Consensus 223 -~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 223 -FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -CC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 22 689999999999999985 7899999999887764 333 368899999999999999999999999999999
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+++....... ...+ .+++|+| ++.+|++++.||.|++|++.
T Consensus 296 ~~~~~~~~~~---------~~~v--~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 296 YGASIFQSKE---------SSSV--LSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TCCEEEEEEC---------SSCE--EEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred CCeEEEEecC---------CCcE--EEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 9987755421 3334 4999999 89999999999999999973
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.6e-39 Score=344.89 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=246.1
Q ss_pred CcceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEe
Q 004683 319 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 397 (737)
Q Consensus 319 ~~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fs 397 (737)
..+.+++.||.. +.+ +.|+|+|+++++|+.|++|++||... +.+... +.+ |...|.+++|+
T Consensus 56 ~~~~~~l~gH~~~V~~-----------~~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~~-~~~--h~~~v~~~~~s 117 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYS-----------LDWTPEKNWIVSASQDGRLIVWNALT----SQKTHA-IKL--HCPWVMECAFA 117 (380)
T ss_dssp CEEEEEECCCSSCEEE-----------EEECTTSSCEEEEETTSEEEEEETTT----TEEEEE-EEC--CCTTCCCCEEC
T ss_pred eEEeecccccccEEEE-----------EEEcCCCCEEEEEeCCCeEEEEECCC----CccceE-Eec--CCCCEEEEEEC
Confidence 344566677776 433 33789999999999999999999874 444333 555 89999999999
Q ss_pred cCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCe
Q 004683 398 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGK 473 (737)
Q Consensus 398 pdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~ 473 (737)
|+|++|++|+.|+++++|++.......+... +.. ...+|.+.|.++.|+ +..|++|+ |++
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~--------------~~~--~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMP--------------VSR--VLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCCCSST--------------TCC--BCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred CCCCEEEEeeCCCcEEEEECCCCccccCCcc--------------cee--eccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 9999999999999999999875322111100 011 112799999999998 45799999 999
Q ss_pred EEEEECCCCcEEEEe-----cCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecC-CCcEEEEEcCCCcceEEEEEeCCC
Q 004683 474 ISIFSLETFQTLATF-----ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSL 545 (737)
Q Consensus 474 i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~-~~~~~~~l~~~~~~v~~l~~sp~g 545 (737)
|++||+.+++.+..+ .+|...|.+++|++ ++ .+++|+.|+.|++||++ ++..+..+.+|...|.+++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999998887 57889999999987 66 99999999999999998 557788999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeec-ccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecC
Q 004683 546 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 546 ~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~ 623 (737)
+++++|+.||+|++||++++........... ...+. ..|.+++|+|+|++++++ .||.|++||+.+++.+..+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 9999999999999999998644322111100 01111 358999999999999996 899999999999888776632
Q ss_pred --CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 624 --DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 624 --~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
..|...|++++|+|+|++|++|+.||+|++|++...+
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 3478999999999999999999999999999998654
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=339.00 Aligned_cols=324 Identities=17% Similarity=0.177 Sum_probs=262.7
Q ss_pred ccccccCCCCC-EEEEEecCCeEEEeec----CccCCCC---ceeeee--cCC----CCCCCCeEEEEEecCCCEEEEEE
Q 004683 342 SRESTSLPDAD-SAVCAKSLEKSVNLKL----QLINEPS---ECRTLL--LPD----NSFGGRVVRLIYSHSGDFLVALT 407 (737)
Q Consensus 342 ~~~~~~spdg~-~la~~s~dg~v~iW~~----~~~~~~~---~~~~~~--l~~----~~h~~~V~~v~fspdg~~L~s~s 407 (737)
...+.++|+|+ ++|+++.|+.|++|++ ......- ....+. +.+ .+|.+.|.+++|+|+|++|++|+
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 34455899999 9999999999999999 6421000 111111 111 12577999999999999999999
Q ss_pred CCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcE
Q 004683 408 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 484 (737)
Q Consensus 408 ~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~ 484 (737)
.||.|++|+... . ....+. +|...|.+++|+ +++|++++ ||.|++||+.+++.
T Consensus 128 ~dg~i~i~~~~~------~----------------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 128 ENGELRLWNKTG------A----------------LLNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp TTSCEEEEETTS------C----------------EEEEEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCCeEEEEeCCC------C----------------eeeecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 999999998321 1 111111 699999999999 88999999 99999999999999
Q ss_pred EEEecCCCCC---------------eEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEE
Q 004683 485 LATFANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 549 (737)
Q Consensus 485 ~~~~~~~~~~---------------v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~ 549 (737)
+..+..+... +.+++|+|++.+++++.|+.|++||+.+++.+..+..|...|.+++|+|++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9999877776 8999999988888999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCC
Q 004683 550 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 628 (737)
Q Consensus 550 s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~ 628 (737)
+++.||.|++||+++++ .+.. ..+|. ..|.+++|+|++ .+++ +.|+.|++||+++++.+..+.. |..
T Consensus 264 ~~~~d~~i~i~d~~~~~-----~~~~-~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~ 331 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGN-----SQNC-FYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGV 331 (425)
T ss_dssp EEETTSCEEEECSSSBS-----CSEE-ECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTC
T ss_pred EEcCCCEEEEEECCCCc-----cceE-ecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCc
Confidence 99999999999999843 3332 23454 789999999999 7776 5899999999999999888865 578
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCCCe--------------------eEEEEecccccCCCCccCceeeEEEEEc
Q 004683 629 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~--------------------~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
.|.+++|+|++++|++++.||.|++||+.+++ .+..+..+ ... ..+.+++|+
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~v~~~~~s 403 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-------QDN-DYIFDLSWN 403 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-------TCC-CCEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-------ccC-CceEEEEcc
Confidence 99999999999999999999999999999887 66666432 222 134499999
Q ss_pred cCCCCEEEEEECCCcEEEEecC
Q 004683 689 PLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~ 710 (737)
| ++.+|++++.||.|++|++.
T Consensus 404 ~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 C-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp T-TSSEEEEEESSSCCEEEECC
T ss_pred C-CCceEEEEecCceEEEEeec
Confidence 9 89999999999999999985
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=329.68 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=230.8
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.|+|||+++|+|+.|++|+||++... ...+......+ |...|.+++|+|+|++|++|+.|+++++|+......
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-- 95 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEG--HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-- 95 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSS--CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccc--cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--
Confidence 448999999999999999999998742 11223332355 999999999999999999999999999998763211
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC---cEEEEecCCCCCeEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYF 498 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~~ 498 (737)
.++..+. +|...|.+++|+ +++|++|+ |++|++||+.++ .++..+.+|...|.++
T Consensus 96 -----------------~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 96 -----------------ECVTTLE--GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -----------------EEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -----------------EEEEEcc--CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 1122222 799999999999 89999999 999999999875 3466778999999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCc--EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--------
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------- 567 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~--~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~-------- 567 (737)
+|+|++ +|++|+.|+.|++||.+++. +...+.+|...|.+++|+|+|++|++++.|++|++||......
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence 999999 99999999999999998875 4578899999999999999999999999999999999743211
Q ss_pred --eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCc----eeEE---ecCCCCCCCeEEEEEcc
Q 004683 568 --LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN----HTSQ---LVPDKMDLPITYATYSC 637 (737)
Q Consensus 568 --~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~----~~~~---~~~~~h~~~v~~~~~sp 637 (737)
....++.++...|. ..|.+++|+|++..+++ +.|+.|++|+...+. +... .....|...|++++|+|
T Consensus 237 ~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp --CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred cCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 01122332333355 78999999999999998 599999999987543 1111 11234789999999999
Q ss_pred CC-CEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 638 DG-KCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 638 ~~-~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
++ .+|++|+.||+|++|++.+++....+
T Consensus 314 ~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 314 KEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSTTEEEEEETTSCEEEEEECC-------
T ss_pred CCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 87 59999999999999999988765443
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.2e-37 Score=326.45 Aligned_cols=295 Identities=16% Similarity=0.187 Sum_probs=233.9
Q ss_pred cCCCCCCCCeEEEEE-----ec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCC
Q 004683 382 LPDNSFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 455 (737)
Q Consensus 382 l~~~~h~~~V~~v~f-----sp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~ 455 (737)
+.| |.+.|++++| ++ ++++|++|+.|++|++||+..... .+ ..+.....+. +|...
T Consensus 17 l~g--H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~-~~-------------~~~~~~~~l~--~h~~~ 78 (343)
T 2xzm_R 17 LEG--HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NG-------------YFGIPHKALT--GHNHF 78 (343)
T ss_dssp EEC--CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC-SS-------------BSEEEEEEEC--CCSSC
T ss_pred ecc--chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc-cc-------------ccccccchhc--cCCCc
Confidence 666 9999999999 77 999999999999999999875322 00 0111222222 79999
Q ss_pred eEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc-
Q 004683 456 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK- 530 (737)
Q Consensus 456 V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~- 530 (737)
|.+++|+ +.++++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.. .......
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~ 157 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAE 157 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCT
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cceeeeec
Confidence 9999999 88999999 9999999999999999999999999999999999 999999999999999984 4444343
Q ss_pred --CCCcceEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 531 --GHQNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 531 --~~~~~v~~l~~sp~g----------~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
+|...|.+++|+|++ .++++++.||.|++||... .... ...+|. ..|.+++|+|+|++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKY 227 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCE
Confidence 688999999999987 7899999999999999543 2222 234565 78999999999999
Q ss_pred EEE-EecCcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEE--EEecccc----
Q 004683 599 LLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAY---- 670 (737)
Q Consensus 599 l~~-~~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~~~---- 670 (737)
|++ +.|+.|++||+.+ ..+...+. +...|.+++|+|++.++++| .|+.|++|++.+++... .+.....
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EEEEcCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 998 5899999999944 44444442 25679999999999988755 57889999998876544 3321100
Q ss_pred cCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 671 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
...|| ... +.+++|+| ++.+|++|+.||+|++|++.+++
T Consensus 304 ~~~~~-~~~--v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 304 GQKGK-NPQ--CTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp TBCCS-CCC--EEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhcCC-CCc--eEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence 01132 223 45999999 89999999999999999987653
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.7e-37 Score=332.05 Aligned_cols=301 Identities=13% Similarity=0.125 Sum_probs=237.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeE---EeecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ---LYQPSSKLVMTNDIAADPKDSISCFALR- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~---l~~~~~~~~~~~~~~~~h~~~V~~v~~s- 462 (737)
|.+.|.+++|||||++|++|+ ++++++|++.++.. ...+... ..+.. .........+...|.+++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-----~~~l~~~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-----VARLSDDSAANKDPE---NLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-----EEEECC--------------------CCCCBEEEEEECT
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-----EEEecCccccccccc---cccccccCCCceeEEEEEECC
Confidence 899999999999999999876 68999999875432 1111000 00000 00000001244569999999
Q ss_pred -CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 463 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 463 -~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
|++|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++++++...+. +...+.++
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999 9999999999999999999999999999999999 99999999999999999999888776 56789999
Q ss_pred EEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeee-ecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-
Q 004683 540 AYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL- 615 (737)
Q Consensus 540 ~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~- 615 (737)
+|+| +++++++|+.|+.|++||++++......... ....+|. ..|.+++|+|+|++|++ +.|+.|++||+++.
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999 8999999999999999999986433221110 0113565 78999999999999998 58999999999753
Q ss_pred -----------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEE
Q 004683 616 -----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 684 (737)
Q Consensus 616 -----------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 684 (737)
.+...+.+ |...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..| ...+. +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--------~~~v~--~ 357 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--------RNSVI--S 357 (393)
T ss_dssp -----------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE--E
T ss_pred CcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--------CCCEE--E
Confidence 23444543 6889999999999999999999999999999999988887643 33455 8
Q ss_pred EEEccC-----CCCEEEEEECCCcEEEEecCCC
Q 004683 685 IAAHPL-----EPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 685 v~~sp~-----d~~~las~s~Dg~V~iWd~~~~ 712 (737)
++|+|. ++.+||+|+.||+|+||++...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 888752 5789999999999999998654
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=322.74 Aligned_cols=290 Identities=16% Similarity=0.126 Sum_probs=223.8
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|++++|+|+ +|++|+.|++|++|++..+.. .....+...+|...|.+++|
T Consensus 10 ~~~--h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------~~~~~~~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 10 LKL--YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------TLIDVLDETAHKKAIRSVAW 66 (330)
T ss_dssp EEC--CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------EEEEEECTTCCCSCEEEEEE
T ss_pred ecc--CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------EEEEEEecCCccCCEEEEEE
Confidence 566 9999999999998 999999999999999764211 11111111249999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCC-------CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC----CcEE
Q 004683 462 R--GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTK 526 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~----~~~~ 526 (737)
+ +++|++|+ |++|++||+.. .+.+..+.+|...|.+++|+|++ +|++|+.|++|++||++. .+++
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9 88999999 99999999853 45677888999999999999999 999999999999999943 2567
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC--CCEEEE-Ee
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IH 603 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~-~~ 603 (737)
..+.+|...|.+++|+|++.+|++++.|++|++||..++.. .++. ...+|. ..|.+++|+|+ +..+++ +.
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEET
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeC
Confidence 88899999999999999999999999999999999876421 2333 345666 79999999999 677887 58
Q ss_pred cCcEEEEeCCCC--------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCee--EEEEecccccCC
Q 004683 604 EGQIDVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQINLTAYAQP 673 (737)
Q Consensus 604 dg~I~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~~~~~~ 673 (737)
|++|++||+.++ .+...+.. .|...|.+++|++++ +|++++.||.|++|+..+++. ..... .
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~ 291 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------L 291 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------C
T ss_pred CCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------c
Confidence 999999998654 23333332 378899999999765 899999999999999988742 22211 1
Q ss_pred CCccCceeeEEEEEccC-CCCEEEEEECCCcEEEEecCC
Q 004683 674 GTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~V~iWd~~~ 711 (737)
+|....++ +++|+|. ++.+||+|+.||+|+||++.+
T Consensus 292 ~h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33222444 9999994 478999999999999999865
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=346.14 Aligned_cols=332 Identities=11% Similarity=0.065 Sum_probs=262.5
Q ss_pred cccCCCCC-EEEEE----------ecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 004683 345 STSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 413 (737)
Q Consensus 345 ~~~spdg~-~la~~----------s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~ 413 (737)
..|+|+|+ +++++ +.|+.|++|++...... .... ... |...|.+++|+|+|++|++|+.||.|+
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~~~~--~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPIA--SLQ--VDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-SCSC--CCC--CSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-cEEE--EEe--cCCceEEEEECCCCCeEEEEccCCeEE
Confidence 44999997 89999 88999999999853211 1111 112 889999999999999999999999999
Q ss_pred EeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCc------
Q 004683 414 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ------ 483 (737)
Q Consensus 414 iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~------ 483 (737)
+|++..... .......+. +|...|.+++|+ +++|++++ ||.|++||+.+++
T Consensus 93 vw~~~~~~~-----------------~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 93 LYSTNEANN-----------------AINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp EECCSSTTS-----------------CCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred Eeecccccc-----------------cccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 999874211 011222222 699999999999 57899999 9999999999876
Q ss_pred EEEE---ecCCCCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCCcEEEEEcCC------CcceEEEEEeCCC-CEEEEE
Q 004683 484 TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLVSS 551 (737)
Q Consensus 484 ~~~~---~~~~~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~------~~~v~~l~~sp~g-~~l~s~ 551 (737)
.... +..|...|.+++|+|+ + .+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 3333 3578899999999999 5 9999999999999999999999988876 7899999999997 689999
Q ss_pred eCCC---cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec-CCCEEEE-EecCcEEEEeCCCCceeEEecCCCC
Q 004683 552 GADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 552 s~dg---~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h 626 (737)
+.|+ .|++||++++. .++..+..+|. ..|.+++|+| ++++|++ +.|+.|++||+++++++..+.. |
T Consensus 234 ~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~ 304 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNAN----TPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--R 304 (416)
T ss_dssp ECCSSSCCCCEEETTSTT----SCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--S
T ss_pred ECCCCCceEEEEeCCCCC----CCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--C
Confidence 9998 99999999742 23332222565 7899999999 8899988 5899999999999999988875 6
Q ss_pred CCCeEEEEEccCC-CEEEEEecCCeEEEEEcCCCeeEEEEec---------ccccCCCC------------------ccC
Q 004683 627 DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------ISL 678 (737)
Q Consensus 627 ~~~v~~~~~sp~~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~---------~~~~~~g~------------------~~~ 678 (737)
...|.+++|+|++ .+|++++.||.|++|++.++........ ..+...+. +..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 8899999999999 8999999999999999987754322110 00000000 122
Q ss_pred ceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 679 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 679 ~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.+ .+++|+| +|++||+++.||.|+||++.++
T Consensus 385 ~~--~~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PS--PAAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CS--CCCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred Cc--cceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 23 3899999 8999999999999999999864
No 29
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7e-36 Score=342.91 Aligned_cols=343 Identities=11% Similarity=0.089 Sum_probs=278.2
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCC-eEEEEEec--CCCEEEEEECCCcEEEeeccCC
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~-V~~v~fsp--dg~~L~s~s~dg~i~iWd~~~~ 420 (737)
...++|||+++++++ ++.|++|++.....+...... +.+ |... |.+++|+| +|++|++|+.||+|++|++.++
T Consensus 23 ~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~~~--h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 23 HLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ-FTG--HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE-ECT--TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred EEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE-Eec--CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 345899999999998 889999999852111033333 666 9999 99999999 9999999999999999999643
Q ss_pred --------cc-----------------ccccccee--------eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC-
Q 004683 421 --------KQ-----------------SLEEENVN--------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS- 464 (737)
Q Consensus 421 --------~~-----------------~~g~~~~~--------~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~- 464 (737)
.. ++|..... ..+.+|+ ++.....+. +|...|.+++|+ ++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSRPM 174 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSSSC
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCCCc
Confidence 11 23332221 2345666 455555444 799999999999 54
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCC---CeEEEEEcCC-C-eEEEEECCCeEEEEecCCCcEEEEE-c---CCCc
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GHQN 534 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~~~~~l-~---~~~~ 534 (737)
.+++++ |+.|++||+.+++.+..+.+|.. .|.+++|+|+ + .+++++.|+.|++||+.+++.+..+ . +|..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 799999 99999999999999999999999 9999999999 8 9999999999999999999999999 6 8999
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee----------------------------------------ee
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------------------------LH 574 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~----------------------------------------~~ 574 (737)
.|.+++|+ +++++++++.|+.|++||+++++...... +.
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence 99999999 99999999999999999998643211000 00
Q ss_pred --------------------------------------------------------------------------------
Q 004683 575 -------------------------------------------------------------------------------- 574 (737)
Q Consensus 575 -------------------------------------------------------------------------------- 574 (737)
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence
Q ss_pred --------------------------------------------------------------------ecccCCCCCCCC
Q 004683 575 --------------------------------------------------------------------SFQTGLVPETTI 586 (737)
Q Consensus 575 --------------------------------------------------------------------~~~~~~~~~~~~ 586 (737)
....+| ...
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~---~~~ 490 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL---RAK 490 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC---SSC
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCc---cCc
Confidence 000112 267
Q ss_pred eEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc----------CCCEEEEEecCCeEEEEE
Q 004683 587 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 587 v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp----------~~~~l~sgs~dg~I~vwd 655 (737)
|.+++|+|+|++|+++ .||.|++||+.+++++..+.. .|...|++++|+| ++++|++|+.||.|++||
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 8999999999999984 899999999999999887754 2689999999999 999999999999999999
Q ss_pred cCCC-eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 656 TSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 656 ~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+.++ +.+..+.. | ...+. +++|+| ++. |++++.||.|++|++..
T Consensus 570 ~~~~~~~~~~~~~-------h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 570 VKRPMKIIKALNA-------H-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSCTTCCEEETTS-------S-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCceechhhhc-------C-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9998 66666543 2 33455 999999 788 99999999999999875
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.3e-36 Score=316.43 Aligned_cols=296 Identities=16% Similarity=0.201 Sum_probs=242.4
Q ss_pred ecCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 381 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 381 ~l~~~~h~~~V~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
+|.| |.+.|++++|+|+ +++|+|||.|++|+|||+..... ..+.....+. +|...|.++
T Consensus 33 tL~G--H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------~~~~~~~~l~--~h~~~V~~~ 92 (340)
T 4aow_A 33 TLKG--HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------NYGIPQRALR--GHSHFVSDV 92 (340)
T ss_dssp EECC--CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------CSEEEEEEEC--CCSSCEEEE
T ss_pred EECC--ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------ccceeeEEEe--CCCCCEEEE
Confidence 4777 9999999999998 68999999999999999875432 1111222222 799999999
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE-EEEcCCCc
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN 534 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~-~~l~~~~~ 534 (737)
+|+ +++|++++ |+.|++|+...+........+...+..+.+++++ .+++|+.|+.+++||+...... ....+|..
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 89999999 9999999999999888888888899999999999 9999999999999998765543 34567899
Q ss_pred ceEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEe
Q 004683 535 RITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 611 (737)
Q Consensus 535 ~v~~l~~sp~g--~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd 611 (737)
.+.+++|++++ ..+++++.|+.|++||+++++ .+. ...+|. ..|.+++|+|++++|++ +.|+.|++||
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999998865 578899999999999999843 333 334566 78999999999999998 5899999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc--CCCCccCceeeEEEEEcc
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--QPGTISLELYPLVIAAHP 689 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~v~~sp 689 (737)
+++++++..+.. ...|.+++|+|++.++ +++.|+.|++||+.++.....+...... ..+| ... +++++|+|
T Consensus 244 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~--v~~l~~s~ 316 (340)
T 4aow_A 244 LNEGKHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQ--CTSLAWSA 316 (340)
T ss_dssp TTTTEEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCC--EEEEEECT
T ss_pred eccCceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCC--EEEEEECC
Confidence 999999888864 5689999999988655 5567999999999999888777543221 1122 223 45999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCc
Q 004683 690 LEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++++||+|+.||.|+|||+.+|.
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999999876
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-36 Score=321.03 Aligned_cols=298 Identities=15% Similarity=0.198 Sum_probs=235.1
Q ss_pred ceeeccCCCC-CcceeeeCCCCccccccCC-CCCEEEEEecCCeEEEeecCccCCCC--ceeeeecCCCCCCCCeEEEEE
Q 004683 321 PLDASSGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPS--ECRTLLLPDNSFGGRVVRLIY 396 (737)
Q Consensus 321 ~l~~~~gh~~-~~s~l~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~--~~~~~~l~~~~h~~~V~~v~f 396 (737)
..+++.||.. +.++.|.... .+| ||+++++|+.|++|++|++......+ ......+.+ |...|.+++|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~------~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--h~~~V~~~~~ 84 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQ------KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--HNHFVSDLAL 84 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCS------STTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--CSSCEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEe------ecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--CCCceEEEEE
Confidence 3456678887 5555442210 134 89999999999999999987532111 111223666 9999999999
Q ss_pred ecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCe
Q 004683 397 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK 473 (737)
Q Consensus 397 spdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~ 473 (737)
+|++.++++|+.|++|++||+.++. .+..+. +|...|.+++|+ +++|++++ |++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~~~~---------------------~~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~~ 141 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLRTGT---------------------TYKRFV--GHQSEVYSVAFSPDNRQILSAGAERE 141 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETTSSC---------------------EEEEEE--CCCSCEEEEEECSSTTEEEEEETTSC
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCc---------------------EEEEEc--CCCCcEEEEEECCCCCEEEEEcCCCE
Confidence 9999999999999999999877432 222222 699999999999 88999999 999
Q ss_pred EEEEECCCCcEEEEec---CCCCCeEEEEEcCCC-----------eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEE
Q 004683 474 ISIFSLETFQTLATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 539 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-----------~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l 539 (737)
|++||+. +....... +|...|.+++|+|++ .+++++.|+.|++|| .+++....+.+|...|.++
T Consensus 142 i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 142 IKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219 (343)
T ss_dssp EEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE
T ss_pred EEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE
Confidence 9999997 44444443 788899999999873 699999999999999 4567778899999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeE
Q 004683 540 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~ 619 (737)
+|+|+|++|++|+.||.|++||+.... .....+..+ ..|.+++|+|++.+++++.|+.|++||+.+++...
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~-----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLT----YPQREFDAG-----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCS----SCSEEEECS-----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCc----ccceeecCC-----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence 999999999999999999999995421 122212222 57999999999999888899999999998776543
Q ss_pred --EecC---------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 620 --QLVP---------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 620 --~~~~---------~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
.+.. ..|...|.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 3321 1367889999999999999999999999999987653
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=359.28 Aligned_cols=351 Identities=11% Similarity=0.057 Sum_probs=253.6
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
...+.|+|+|+++|+|+.||+|++|+... ..+... +. |...|.+++|+| |++|++++.|++|++||+.++.
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~~-~~---~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVIK-LE---DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTT----CEEEEE-CS---SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEEE-cC---CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 33455899999999999999999999873 333322 32 788999999999 8899999999999999998755
Q ss_pred c----------------ccccccee----eeeEEeecCCCeeeee---------ccCCCCCCCeEEEEEe---CCEEEEE
Q 004683 422 Q----------------SLEEENVN----MESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHLFSA 469 (737)
Q Consensus 422 ~----------------~~g~~~~~----~~~~l~~~~~~~~~~~---------~~~~~h~~~V~~v~~s---~~~l~s~ 469 (737)
. ++|..... ..+++||..++.+... ....+|.+.|.+++|+ +..+++|
T Consensus 91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 3 22332222 1468999998876421 1224699999999999 3578888
Q ss_pred e-CCeEEEEECCCCcEEEEecCC------------------CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE-
Q 004683 470 S-GGKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK- 528 (737)
Q Consensus 470 s-dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~- 528 (737)
+ ||.| +||+.+++.+..+..| ...|.+++|+|+| +|++|+.||.|++||+++++++..
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 8 8999 9999999999888766 4679999999999 999999999999999988776543
Q ss_pred -Ec---C-------------CCcceEEEEEe----C--------------------------------------------
Q 004683 529 -LK---G-------------HQNRITCLAYS----L-------------------------------------------- 543 (737)
Q Consensus 529 -l~---~-------------~~~~v~~l~~s----p-------------------------------------------- 543 (737)
+. . |...|.+++|+ |
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 21 1 12345555553 2
Q ss_pred --------------------------------------------------------------------------------
Q 004683 544 -------------------------------------------------------------------------------- 543 (737)
Q Consensus 544 -------------------------------------------------------------------------------- 543 (737)
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~ 409 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA 409 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence
Q ss_pred ------------------------------------CCCEEEEEeCCCcEEEEeCCCCceeeceeee-----ecccCCCC
Q 004683 544 ------------------------------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVP 582 (737)
Q Consensus 544 ------------------------------------~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~-----~~~~~~~~ 582 (737)
+++.+++|+.|++|++||+.++.......+. .+..+|.
T Consensus 410 s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~- 488 (902)
T 2oaj_A 410 ASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE- 488 (902)
T ss_dssp EEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS-
T ss_pred EEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC-
Confidence 2223333333333333333332110000000 0001343
Q ss_pred CCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCc---------------------------------------------
Q 004683 583 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--------------------------------------------- 616 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~--------------------------------------------- 616 (737)
..|.+++|+|+|++||+ +.||+|+|||+.+++
T Consensus 489 --~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 489 --LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp --CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred --CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 68999999999999999 589999999997652
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEc-----cCC
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH-----PLE 691 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s-----p~d 691 (737)
++..+.+ |...|++++||||| +||+|+.|++|++||+.++..+.......+ ..|| ... |.+++|+ | |
T Consensus 567 ~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~-~~gh-~~~--V~sv~Fs~~~~~~-D 638 (902)
T 2oaj_A 567 PSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREI-SGAQ-SAC--VTCIEFVIMEYGD-D 638 (902)
T ss_dssp EEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGT-CSSC-CCC--EEEEEEEEEECTT-S
T ss_pred eeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHh-cccc-ccc--eEEEEEEEEecCC-C
Confidence 2445543 78999999999999 999999999999999998877653221110 0133 333 4599999 8 6
Q ss_pred C---CEEEEEECCCcEEEEec---CCCc
Q 004683 692 P---NRIALGLTNGRVHVIEP---LESE 713 (737)
Q Consensus 692 ~---~~las~s~Dg~V~iWd~---~~~~ 713 (737)
+ .+|++|+.||+|++||+ .+++
T Consensus 639 g~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 639 GYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred CCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 4 79999999999999999 5654
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.3e-37 Score=328.85 Aligned_cols=281 Identities=10% Similarity=0.052 Sum_probs=222.7
Q ss_pred cccCCCCCEEEEEec------CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeecc
Q 004683 345 STSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 418 (737)
Q Consensus 345 ~~~spdg~~la~~s~------dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~ 418 (737)
+.|+|||++||+++. |+.+++|+............. ..+ |...|.+++|+|++. +++++.||+|+|||+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~--~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQ--TEAGVTDVAWVSEKG-ILVASDSGAVELWEIL 123 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEE--CSSCEEEEEEETTTE-EEEEETTSCEEEC---
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCC--CCCCEEEEEEcCCCC-EEEEECCCEEEEeecc
Confidence 448999999999998 678999987653222222111 222 889999999999986 5678899999999987
Q ss_pred CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe
Q 004683 419 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 495 (737)
Q Consensus 419 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v 495 (737)
++.. ... ......+|...|.+++|+ +++|++|+ ||+|++||+.+++.+..+.+|...|
T Consensus 124 ~~~~-----~~~--------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 124 EKES-----LLV--------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp ----------CC--------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ccce-----eEE--------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 5332 000 000111699999999999 88999999 9999999999999999999999999
Q ss_pred EEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc--CCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 496 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 496 ~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~--~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
.+++|+|++ .+++++.|+.|++||+++++....+. .|...+.+++|+|+ +.++++|+.|+.|++||+++++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---- 260 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---- 260 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----
Confidence 999999988 78999999999999999988766543 46778999999997 5689999999999999999843
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc-CCCEEEEEec
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCK 647 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~ 647 (737)
.+. ...+|. ..|++++|+|++ ++|++ +.|++|+|||+++++++..+ .|...|++++|+| ++++|++|+.
T Consensus 261 -~~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 261 -SAQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp -GCE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEET
T ss_pred -EeE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC
Confidence 333 234555 789999999998 56777 58999999999999887665 4789999999998 8999999999
Q ss_pred CCeEEEEEcCCCe
Q 004683 648 SGHVKVFDTSTLE 660 (737)
Q Consensus 648 dg~I~vwd~~~~~ 660 (737)
||+|++|++.+..
T Consensus 333 Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 DHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEECC---
T ss_pred CCeEEEEECCCCC
Confidence 9999999997643
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=321.18 Aligned_cols=279 Identities=15% Similarity=0.110 Sum_probs=221.6
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCc-------cCC-CCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEee
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQL-------INE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 416 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~-------~~~-~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd 416 (737)
+.|+|||+++++++ |+++++||... ... .+.+... + .|...|.+++|+|++ .|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-V---QTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-E---EESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-e---ccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 34999999999887 77888887321 000 0111111 1 156789999999996 588999999999999
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCC
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 493 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~ 493 (737)
+.+++. .... .....+|.+.|.+++|+ |++|++|+ ||+|++||+.+++.+..+.+|..
T Consensus 110 ~~~~~~-----~~~~--------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 110 LDENET-----LIVS--------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ECTTSS-----CEEE--------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ccCCCc-----eeEe--------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 875432 1111 00111699999999999 89999999 99999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc--CCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCcee
Q 004683 494 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKL 568 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~--~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~ 568 (737)
.|.+++|+|++ .+++|+.|++|++||+++++....+. .|...+.+++|+|+ ++++++|+.||.|++||+++++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-- 248 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-- 248 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--
Confidence 99999999998 78999999999999999999888774 35567999999994 5789999999999999999843
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCC-CEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCC-EEEEE
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS 645 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sg 645 (737)
++.+ ..+|. ..|++++|+|++ ++|++ +.|++|+|||+++++++. +. +|...|++++|+|+++ +|++|
T Consensus 249 ---~~~~-~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 ---CVLS-SAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp ---CCEE-EECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEE
T ss_pred ---EEEE-EcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEE
Confidence 3442 34566 789999999998 56777 589999999999887654 43 4799999999999886 67799
Q ss_pred ecCCeEEEEEcCCCe
Q 004683 646 CKSGHVKVFDTSTLE 660 (737)
Q Consensus 646 s~dg~I~vwd~~~~~ 660 (737)
+.||+|++|++.+..
T Consensus 319 s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEEECCC--
T ss_pred cCCCeEEEEECCCCC
Confidence 999999999998754
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-37 Score=334.76 Aligned_cols=321 Identities=10% Similarity=0.033 Sum_probs=253.5
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
..|+|+|+++++++.|+.+++|+.... ..... +.+ | ..+....|+|+|++|++|+.||.|++||+.+.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~----~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---- 129 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIR----DGSKM-LKR--A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---- 129 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSE----ETTTT-SCS--C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----
T ss_pred eeeeecCCeEEEEEcCCcEEEEEeccc----ceeeE-Eec--C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----
Confidence 348999999999999999999998852 22221 333 3 45556688999999999999999999986632
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
.....+. +|...|.+++|+ +++|++|+ ||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 130 -----------------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 130 -----------------LQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp -----------------EEEEETT--SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred -----------------ceeeecc--cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 2222222 699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEcC---CCcceEEE---------------------EEeCCCCEEEEEeCCCc
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCL---------------------AYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~---~~~~v~~l---------------------~~sp~g~~l~s~s~dg~ 556 (737)
|++ .|++|+.|+.|++||+++++.+..+.. |...+.++ +|+|+++++++++.||.
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 270 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV 270 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe
Confidence 999 999999999999999999999988875 33445544 45789999999999999
Q ss_pred EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCcEEEEeCCCCce-eEEecCCCCCCCeEEE
Q 004683 557 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYA 633 (737)
Q Consensus 557 I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~~ 633 (737)
|++||++++. .+..+..+|. ..|.+++|+|++. ++++ +.||.|++||+++++. +..+..+ |...|.++
T Consensus 271 i~i~d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~ 341 (420)
T 3vl1_A 271 ITVHNVFSKE-----QTIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNV 341 (420)
T ss_dssp EEEEETTTCC-----EEEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEE
T ss_pred EEEEECCCCc-----eeEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEE
Confidence 9999999853 3333445565 7899999999998 8888 5889999999998754 6666553 57788888
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe---cccccCCCCccCceeeEEEEEccCCCC---EEEEEECCCcEEEE
Q 004683 634 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN---LTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVI 707 (737)
Q Consensus 634 ~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~v~~sp~d~~---~las~s~Dg~V~iW 707 (737)
.+ +++++|++++.||.|++|++........+. .... ..++ ...+. +++|+| ++. .+++++.+|.+.+|
T Consensus 342 ~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 342 YF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF-LVSN-DDAVS--QFCYVS-DDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE-ECCS-SCCCC--EEEEEC-CSSSSCEEEEEETTTEEEEE
T ss_pred Ee-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccE-EccC-CcceE--EEEEcc-CCCCcceEEEEcCCceEEEE
Confidence 55 678899999999999999998743221111 0000 1122 33344 999999 777 67777789999999
Q ss_pred ecCC
Q 004683 708 EPLE 711 (737)
Q Consensus 708 d~~~ 711 (737)
++.+
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9865
No 36
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.7e-36 Score=315.37 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=239.1
Q ss_pred eeeccCCCC-CcceeeeCCCCccccccCCC-CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC
Q 004683 322 LDASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 322 l~~~~gh~~-~~s~l~~~~~~~~~~~~spd-g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd 399 (737)
..++.||.. |.++. |+|+ +++|++|+.|++|++||+.............+.+ |...|.+++|+|+
T Consensus 31 ~~tL~GH~~~V~~v~-----------~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--h~~~V~~~~~s~d 97 (340)
T 4aow_A 31 RGTLKGHNGWVTQIA-----------TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSD 97 (340)
T ss_dssp EEEECCCSSCEEEEE-----------ECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--CSSCEEEEEECTT
T ss_pred EEEECCccCCEEEEE-----------EeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--CCCCEEEEEECCC
Confidence 346778887 44432 6676 6899999999999999998643222222333666 9999999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
|++|++++.|+.|++|+...... ..... .+...+..+.++ ++++++++ |+.+++
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTT---------------------TRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEcccccceEEeecccce---------------------eeeec--CCCCceeEEEEeecCccceeecCCCeEEE
Confidence 99999999999999998764321 11111 467778888888 88999999 999999
Q ss_pred EECCCCcEEE-EecCCCCCeEEEEEcCCC---eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe
Q 004683 477 FSLETFQTLA-TFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 477 wd~~~~~~~~-~~~~~~~~v~~~~~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s 552 (737)
||+....... ...+|...+.+++|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+
T Consensus 155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 9997654433 345889999999999876 788999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC-------CC
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DK 625 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~-------~~ 625 (737)
.||.|++||+++.. .+..+. ++ ..|.+++|+|++.+++++.|+.|++||++++..+..+.. ..
T Consensus 235 ~Dg~i~iwd~~~~~-----~~~~~~-~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 235 KDGQAMLWDLNEGK-----HLYTLD-GG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304 (340)
T ss_dssp TTCEEEEEETTTTE-----EEEEEE-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred CCCeEEEEEeccCc-----eeeeec-CC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence 99999999999843 333222 23 579999999999888888999999999998877766543 24
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 626 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 626 h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 68899999999999999999999999999999985
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=316.77 Aligned_cols=301 Identities=12% Similarity=0.093 Sum_probs=223.3
Q ss_pred ceeeccCCCC-CcceeeeCCCCccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC
Q 004683 321 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 399 (737)
Q Consensus 321 ~l~~~~gh~~-~~s~l~~~~~~~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd 399 (737)
.++++.+|.. +.++. ++|+ ++|+|+.|++|++|++... ...+... +...+|...|.+++|+|+
T Consensus 6 ~~~~~~~h~~~v~~~~-----------~s~~--~las~~~D~~i~lw~~~~~--~~~~~~~-~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFD-----------FSQG--ILATGSTDRKIKLVSVKYD--DFTLIDV-LDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EEEEEECCSSCEEEEE-----------EETT--EEEEEESSSCEEEEECSSS--CCEEEEE-ECTTCCCSCEEEEEECTT
T ss_pred cceeeccCCCceeeec-----------cCCC--EEEEEcCCCEEEEEEecCC--CeEEEEE-EecCCccCCEEEEEECCC
Confidence 3455566666 44432 5555 8999999999999999742 1122222 322238999999999999
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~v 476 (737)
|++|++|+.|++|++|++..... ......+...+. +|...|.+++|+ +++|++|+ |++|++
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~~--~h~~~V~~v~~sp~g~~las~s~D~~v~i 133 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESAD--------------RTFEMDLLAIIE--GHENEVKGVAWSNDGYYLATCSRDKSVWI 133 (330)
T ss_dssp SSEEEEEETTSCEEEEEC---------------------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcC--------------ccccceeEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 99999999999999999753211 001112222222 799999999999 89999999 999999
Q ss_pred EECCC----CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC--cEEEEEcCCCcceEEEEEeCC--CCE
Q 004683 477 FSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNV 547 (737)
Q Consensus 477 wd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~--~~~~~l~~~~~~v~~l~~sp~--g~~ 547 (737)
||+.. .+++..+.+|...|.+++|+|++ .|++|+.|++|++||..++ +++..+.+|...|.+++|+|+ +..
T Consensus 134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 99943 25677888999999999999999 9999999999999998876 678889999999999999998 778
Q ss_pred EEEEeCCCcEEEEeCCCCce---eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCc--eeEEe
Q 004683 548 LVSSGADAQLCVWDAVGWKK---LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQL 621 (737)
Q Consensus 548 l~s~s~dg~I~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~--~~~~~ 621 (737)
+++++.|++|++||++.+.. ........+...|. ..|.+++|++++ .+++ +.||.|++||..++. .....
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 99999999999999875311 00122232333365 789999999876 5555 799999999998774 33333
Q ss_pred cCCCCCC-CeEEEEEcc--CCCEEEEEecCCeEEEEEcCC
Q 004683 622 VPDKMDL-PITYATYSC--DGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 622 ~~~~h~~-~v~~~~~sp--~~~~l~sgs~dg~I~vwd~~~ 658 (737)
. ..|.. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 290 ~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 A-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp S-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred c-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2 23565 899999999 789999999999999999865
No 38
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.8e-35 Score=321.17 Aligned_cols=310 Identities=18% Similarity=0.226 Sum_probs=260.4
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+.++|+++++|+.||+|++||+.. +.+... +.+ |.+.|++++|+ +.++++|+.||+|++||+.++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~~-~~~--h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~------ 189 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVT----GKCLRT-LVG--HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG------ 189 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT----CCEEEE-CCC--CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT------
T ss_pred EEEcCCEEEEEECCCcEEEEECCC----CcEEEE-EcC--CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC------
Confidence 456789999999999999999984 455443 666 99999999998 569999999999999987642
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 504 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~- 504 (737)
..+..+. +|...|.+++|+++.+++|+ ||+|++||+.+++.+..+.+|...|.++++ ++
T Consensus 190 ---------------~~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 190 ---------------ECIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp ---------------EEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred ---------------cEEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 2222222 69999999999988899999 999999999999999999999999999999 67
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 584 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
.+++|+.||.|++||+++++++..+.+|...|.+++| ++.++++++.||.|++||+++++. +.. ..+|.
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~~-~~~~~--- 319 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----IHT-LTGHQ--- 319 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----EEE-ECCCC---
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----EEE-EcCCc---
Confidence 9999999999999999999999999999999999999 789999999999999999998543 332 23454
Q ss_pred CCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 585 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
..+.++.++ ++++++ +.||.|++||+++++++..+... .|...|++++|+ ++++++|+.||.|++||+.+++.+
T Consensus 320 ~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 320 SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 577777764 568887 58999999999999999888653 268899999995 689999999999999999999988
Q ss_pred EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCc----EEEEecCC
Q 004683 663 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLE 711 (737)
Q Consensus 663 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~----V~iWd~~~ 711 (737)
..+.... .+.+...++ +++|+| ++.++|+|+.||+ |.|||+..
T Consensus 396 ~~~~~~~---~~~~~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 396 RNLVTLE---SGGSGGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEECT---TGGGTCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eeeeccc---cCCCCceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 8773210 011233444 999999 8999999999998 99999965
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-36 Score=373.21 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=286.3
Q ss_pred cccCC--CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 345 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 345 ~~~sp--dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
..|+| ++..+++++.|+.|++||+.. +.+... +.+ |.+.|.+++|+|+|++|++++.||+|++||+.+...
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~~-~~~--h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRNT-MFG--HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTS----SSEEEE-ECC--CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCC----cchhhe-ecC--CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 44667 566899999999999999984 555544 566 999999999999999999999999999999876532
Q ss_pred ------------------------------ccccccee---eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004683 423 ------------------------------SLEEENVN---MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 467 (737)
Q Consensus 423 ------------------------------~~g~~~~~---~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 467 (737)
++|..... ..+.+|+..++........ +|...|.+++|+ +++++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEE
Confidence 11221111 1357899988877665443 589999999999 88999
Q ss_pred EEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC------------------------
Q 004683 468 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------------ 521 (737)
Q Consensus 468 s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~------------------------ 521 (737)
+++ ||.|++||+.++..+..+.+|...|.+++|+|++ .+++++.||.|++||+.
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999 9999999999999999999999999999999999 99999999998888743
Q ss_pred -------------------------------------------------------CCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 522 -------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 522 -------------------------------------------------------~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
+++....+.+|...|.+++|+|+|+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence 2334455667889999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCC
Q 004683 547 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 547 ~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h 626 (737)
++++++.||.|++||+.+++.. . ..+|. ..|.+++|+|++..++++.||.|++||+.+++.+..+.+ |
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~ 1084 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--H 1084 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--C
T ss_pred EEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--c
Confidence 9999999999999999985432 2 22444 789999999988776668999999999999999888865 6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEE
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 706 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i 706 (737)
...|++++|+|+++++++++.||+|++||+.+++....+..| ...+. +++|+| ++.+||+|+.||.|++
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h--------~~~v~--~~~~s~-dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH--------NGCVR--CSAFSL-DGILLATGDDNGEIRI 1153 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC--------SSCEE--EEEECS-SSSEEEEEETTSCCCE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC--------CCcEE--EEEECC-CCCEEEEEeCCCEEEE
Confidence 889999999999999999999999999999999877766532 33444 999999 8999999999999999
Q ss_pred EecCCCceeeee
Q 004683 707 IEPLESEVEWGK 718 (737)
Q Consensus 707 Wd~~~~~~~w~~ 718 (737)
||+.+++.....
T Consensus 1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp EESSSSCCCCCC
T ss_pred EECCCCceEEEe
Confidence 999998765543
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8e-35 Score=304.93 Aligned_cols=275 Identities=12% Similarity=0.126 Sum_probs=230.8
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.++|+|+++++++.|+.|++|+... +.+... +.+ |...|.+++|+|+|++|++|+.|++|++||+.++.
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--- 98 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYD----GKFEKT-ISG--HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--- 98 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCC----cccchh-hcc--CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---
Confidence 34889999999999999999999874 444443 566 89999999999999999999999999999876432
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 501 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 501 (737)
++..+. +|...|.+++|+ ++++++|+ ||.|++||+.+++.+..+..|...|.+++|+
T Consensus 99 ------------------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 99 ------------------CLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp ------------------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred ------------------EEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 222222 699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCeEEEEecCCCcEEEEEc-CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC
Q 004683 502 PQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 502 ~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~-~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
|++ .+++|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.|+.|++||+++++. +.. ..+
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~-~~~ 232 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-----LKT-YTG 232 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----EEE-ECS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EEE-EEe
Confidence 999 99999999999999999998887764 4567899999999999999999999999999998543 332 223
Q ss_pred CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEEc
Q 004683 580 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDT 656 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs--~dg~I~vwd~ 656 (737)
|......+......+++.++++ +.||.|++||+.+++.+..+.+ |...|.+++|+|+++++++++ .|++|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 3211122333334467888888 5899999999999999988865 688999999999999999987 6999999986
Q ss_pred C
Q 004683 657 S 657 (737)
Q Consensus 657 ~ 657 (737)
.
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-35 Score=308.17 Aligned_cols=273 Identities=13% Similarity=0.150 Sum_probs=227.5
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
.+.|+|||+++++++.||+|++||+.. +.+... +.+ |..+|.+++|+|++++|++|+.|++|++||+.++.
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~~-~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-- 88 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYET----QVEVRS-IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-- 88 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT----TEEEEE-EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC----CceeEE-eec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--
Confidence 345899999999999999999999984 444333 555 89999999999999999999999999999876432
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC-cEEEEecCCCCCeEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI 499 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 499 (737)
.+..+. +|...|.+++|+ ++++++|+ ||+|++||+.++ .....+.+|...|.+++
T Consensus 89 -------------------~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 89 -------------------KVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp -------------------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred -------------------EEEEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 222222 799999999999 88999999 999999999887 45567889999999999
Q ss_pred EcC-CC-eEEEEECCCeEEEEecCCCcEEEEEc-CCCcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 500 LLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 500 ~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l~-~~~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
|+| ++ .|++|+.|+.|++||+.++.....+. +|...+..+.|+| ++.++++++.|++|++||+++++ .+.
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~ 222 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA 222 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----EEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----cce
Confidence 999 45 99999999999999998877655554 4668899999987 77899999999999999999843 344
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCC--EEEEEecCCeE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHV 651 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~sgs~dg~I 651 (737)
...+|. ..|.+++|+|++.+|++ +.||.|++||+.+++++..+.. |...+.+++|+|++. ++++|+.|| +
T Consensus 223 -~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~asg~~~g-~ 295 (304)
T 2ynn_A 223 -TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNG-F 295 (304)
T ss_dssp -EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEEECTTCGGGCEEEEETTE-E
T ss_pred -eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEEECCCCCceEEEEecCCc-e
Confidence 234566 78999999999999998 5899999999999999998865 578899999999875 577776555 6
Q ss_pred EEEEcCC
Q 004683 652 KVFDTST 658 (737)
Q Consensus 652 ~vwd~~~ 658 (737)
.+|++..
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 6777764
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-35 Score=343.49 Aligned_cols=295 Identities=15% Similarity=0.196 Sum_probs=240.6
Q ss_pred cCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
+.+ |.+.|++++|+|++ ++|+|||.|++|++|++...... .+.....+. +|...|.+++
T Consensus 378 l~~--H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~v~ 437 (694)
T 3dm0_A 378 MRA--HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLT--GHSHFVEDVV 437 (694)
T ss_dssp EEC--CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEE--CCSSCEEEEE
T ss_pred ccc--CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceec--CCCCcEEEEE
Confidence 556 99999999999875 79999999999999998753220 111111122 7999999999
Q ss_pred Ee--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE---cCCC
Q 004683 461 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQ 533 (737)
Q Consensus 461 ~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l---~~~~ 533 (737)
|+ +++|++|+ ||+|++||+.++.....+.+|...|.+++|+|++ .|++|+.|++|++||.......... .+|.
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 99 89999999 9999999999999999999999999999999999 9999999999999998755433322 4688
Q ss_pred cceEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEE
Q 004683 534 NRITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 610 (737)
Q Consensus 534 ~~v~~l~~sp~g--~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iw 610 (737)
..|.+++|+|++ ..+++++.|++|++||++++. ... ...+|. ..|.+++|+|+|++|++ +.||.|++|
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLW 588 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 899999999987 689999999999999999843 223 344666 78999999999999998 589999999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc---------CCCCccCcee
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELY 681 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~---------~~g~~~~~v~ 681 (737)
|+++++.+..+.. ...|.+++|+|++.++++++ ++.|++||+.+++.+..+..+... +..+....++
T Consensus 589 d~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 589 DLAEGKKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp ETTTTEEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred ECCCCceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999998877643 56799999999999888776 566999999999988877533111 0011122345
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 682 PLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+++++|+| ++.+|++|+.||+|+||++.
T Consensus 665 ~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred eeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 67999999 89999999999999999985
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-35 Score=316.51 Aligned_cols=282 Identities=14% Similarity=0.133 Sum_probs=228.8
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCC----------------CCCCCeEEEEEecCCCEEEE
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN----------------SFGGRVVRLIYSHSGDFLVA 405 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~----------------~h~~~V~~v~fspdg~~L~s 405 (737)
...+.|+|||+++|+|+ ++++++|++.. +..... +.++ .+...|.+++|+|+|++|++
T Consensus 67 V~~v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC-NKTTQVYRVSD----GSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEEC-BSCEEEEETTT----CCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEEecC----CCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 33455899999999976 78999999874 333322 3220 12335999999999999999
Q ss_pred EECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC
Q 004683 406 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF 482 (737)
Q Consensus 406 ~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~ 482 (737)
|+.|++|++||+.+. ..+..+. +|...|.+++|+ +++|++++ |++|++||+.++
T Consensus 141 ~~~d~~i~iwd~~~~---------------------~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 141 GAEDRLIRIWDIENR---------------------KIVMILQ--GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp EETTSCEEEEETTTT---------------------EEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeEEEEECCCC---------------------cEEEEEc--cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 999999999987642 2222222 799999999999 88999999 999999999999
Q ss_pred cEEEEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCCcEEEEE-------cCCCcceEEEEEeCCCCEEEEEeC
Q 004683 483 QTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGA 553 (737)
Q Consensus 483 ~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l-------~~~~~~v~~l~~sp~g~~l~s~s~ 553 (737)
+....+. +...+.+++|+| ++ ++++|+.|+.|++||++++..+..+ .+|...|.+++|+|+|+++++++.
T Consensus 198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 8887775 456799999999 77 9999999999999999999888776 578999999999999999999999
Q ss_pred CCcEEEEeCCCCceee-------ceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCC
Q 004683 554 DAQLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 625 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~-------~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~ 625 (737)
|+.|++||+++..... ..... ...+|. ..|.+++|+|++.+|++ +.|+.|++||..+++++..+.+
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-- 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-- 350 (393)
T ss_dssp TSEEEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC--
Confidence 9999999998643211 11122 234565 78999999999999998 5899999999999999988865
Q ss_pred CCCCeEEEEEcc------CCCEEEEEecCCeEEEEEcCCC
Q 004683 626 MDLPITYATYSC------DGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 626 h~~~v~~~~~sp------~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
|...|.+++|++ ++++|++|+.||+|+||++...
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 788999999986 6889999999999999997643
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.9e-35 Score=364.14 Aligned_cols=322 Identities=11% Similarity=0.128 Sum_probs=266.2
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...++|||+++++|+.||+|++|++.+ +.+... +.+ |.+.|.+++|+|+|++|++|+.||+|++||+.++
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~-~~~--h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--- 689 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAET----GEKLLD-IKA--HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--- 689 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC----CCEEEE-ecc--CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---
Confidence 345899999999999999999999984 444433 666 9999999999999999999999999999987643
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
.++.... +|...|.+++|+ +.++++|+ ||.|++||+.+++.+..+.+|...|.++
T Consensus 690 ------------------~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 690 ------------------KLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp ------------------CEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred ------------------ceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 2222222 699999999998 44788888 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEE------------------------------------------------
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------------------------------ 529 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l------------------------------------------------ 529 (737)
+|+|++ .+++|+.||.|++||+.+++....+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999999 9999999999999998876544332
Q ss_pred -------cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-
Q 004683 530 -------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 601 (737)
Q Consensus 530 -------~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~- 601 (737)
.+|...|.+++|+|+++++++++.||.|++||+.++. .+. ...+|. ..|.+++|+|+|+++++
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVA-DCRGHL---SWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEE
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eee-ecCCCc---cceEEEEECCCCCEEEEE
Confidence 1577889999999999999999999999999999843 333 234566 78999999999999998
Q ss_pred EecCcEEEEeCCCCce-----------------------------eEEecCC------CCCCCeEEEEEccCCCEEEEEe
Q 004683 602 IHEGQIDVYEAPTLNH-----------------------------TSQLVPD------KMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 602 ~~dg~I~iwd~~~~~~-----------------------------~~~~~~~------~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+.||.|++||+.+... +...... .+...+.+++|+|+++++++|+
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc
Confidence 5899999999653110 0000000 0256799999999999999999
Q ss_pred cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCcee
Q 004683 647 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 647 ~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
.||.|++|++.+++....+..| ...+. +++|+| ++.+|++++.||.|++|++.+++..
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h--------~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGH--------KKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCC--------SSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCceeeecccC--------CCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999999887776533 34455 899999 8999999999999999999987654
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=307.72 Aligned_cols=289 Identities=15% Similarity=0.163 Sum_probs=245.8
Q ss_pred eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe
Q 004683 377 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 456 (737)
Q Consensus 377 ~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V 456 (737)
.....+.+ |.+.|.+++|+|+|++|++|+.||.|++||+.++ ..+..+. +|...|
T Consensus 23 ~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------------~~~~~~~--~h~~~v 77 (369)
T 3zwl_B 23 MKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---------------------ERLGTLD--GHTGTI 77 (369)
T ss_dssp EEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---------------------CEEEEEC--CCSSCE
T ss_pred cccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---------------------hhhhhhh--hcCCcE
Confidence 34445676 9999999999999999999999999999987643 2222222 699999
Q ss_pred EEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC-----CeEEEEecCCCc---
Q 004683 457 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK--- 524 (737)
Q Consensus 457 ~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~~--- 524 (737)
.+++|+ +++|++++ ||.|++||+.+++.+..+. +...|.+++|+|++ .+++++.+ +.|++||+.++.
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 999999 88999999 9999999999999999887 78899999999999 99999999 999999987653
Q ss_pred --------EEEEEcCCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 525 --------TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 525 --------~~~~l~~~~~--~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
....+..|.. .+.+++|+|+++++++++.||.|++||+++.. ..+. ....|. ..|.+++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~ 228 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSP 228 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECT
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECC
Confidence 3344555665 89999999999999999999999999998731 2223 233444 7899999999
Q ss_pred CCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC--------------eEEEEEcCCC
Q 004683 595 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTL 659 (737)
Q Consensus 595 ~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg--------------~I~vwd~~~~ 659 (737)
++++|++ +.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||..++
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9999998 589999999999999988886 478899999999999999999988 8999999999
Q ss_pred eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 660 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 660 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+.+..+..| ...+. +++|+| ++.+|++++.||.|+||++..+.
T Consensus 306 ~~~~~~~~~--------~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 306 EEIGRVQGH--------FGPLN--TVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp CEEEEEECC--------SSCEE--EEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred cchhheecc--------cCcEE--EEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 998888643 33444 999999 89999999999999999998754
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-36 Score=327.75 Aligned_cols=320 Identities=10% Similarity=0.091 Sum_probs=248.1
Q ss_pred ccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccc
Q 004683 346 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 346 ~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+|+|+++.+++++ .|+.. +.+......+ |.+.|.+++|+| +|++|++|+.||+|++||+.....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-----g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-- 98 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-----GKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-- 98 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-----CCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT--
T ss_pred hcCCccccccccc------ccccc-----ceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc--
Confidence 4889999888776 48754 3444432366 999999999999 999999999999999999874111
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECC---CCcEEEEecC--------
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFAN-------- 490 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~---~~~~~~~~~~-------- 490 (737)
+... ..... . +|...|.+++|+ +++|++|+ ||.|++||+. +++....+.+
T Consensus 99 ~~~~-----------~~~~~--~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 99 GEVY-----------SSSLT--Y---DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp TCCC-----------SCSEE--E---ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred Cccc-----------ceeee--c---cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence 0000 00000 0 489999999999 88999999 9999999994 5554443321
Q ss_pred ----CCCCeEEEE--EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC--CCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 491 ----PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 491 ----~~~~v~~~~--~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~--~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
+...+.++. +++++ .+++|+.|+.|++||+++++++..+.+ |...|.+++|+|+++++++|+.||.|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 456677777 56888 999999999999999999999999988 889999999999999999999999999999
Q ss_pred CCCCceeeceeeeecccCCCCCCCCeEEEEEec----CCCEEEEE-ecCcEEEEeCCCCceeEEecCCC-----------
Q 004683 562 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----------- 625 (737)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~----------- 625 (737)
++++ ..+..+...|. ..|.+++|+| ++.+++++ .||.|++||+++++++..+..+.
T Consensus 243 ~~~~-----~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 243 IRFN-----VLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TTTT-----EEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred cCCc-----cEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 9984 34443332444 6899996665 57788885 88999999999999888776431
Q ss_pred -------------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc---------------------
Q 004683 626 -------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--------------------- 671 (737)
Q Consensus 626 -------------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--------------------- 671 (737)
|...|++++|+ ++++|++|+.||.|++||+.+++....+..+...
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 56678999999 7899999999999999999999887777643100
Q ss_pred ---------CCCCccCceeeEEEEEccC-CCCEEEEEECCCcEEEEe
Q 004683 672 ---------QPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 672 ---------~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~V~iWd 708 (737)
..+| ...| .+++|++. ++.+|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~h-~~~I--~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYH-HDII--NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------------CCCE--EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCccccc-ccce--eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0012 3334 48999983 277999999999999995
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-34 Score=336.14 Aligned_cols=277 Identities=18% Similarity=0.230 Sum_probs=227.5
Q ss_pred cCCC-CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccccc
Q 004683 347 SLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 425 (737)
Q Consensus 347 ~spd-g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g 425 (737)
++|+ ++++++|+.|++|++|++.............+.+ |...|.+++|+|+|++|++|+.||+|+|||+.++
T Consensus 390 ~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----- 462 (694)
T 3dm0_A 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----- 462 (694)
T ss_dssp CCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----
T ss_pred ecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC--CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----
Confidence 4555 5789999999999999987532111122223666 9999999999999999999999999999987642
Q ss_pred ccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEe---cCCCCCeEEEE
Q 004683 426 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF---ANPPPIATYFI 499 (737)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~ 499 (737)
.....+. +|...|.+++|+ +++|++|+ |++|++||.......... .+|...|.+++
T Consensus 463 ----------------~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 463 ----------------VSTRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp ----------------EEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred ----------------cceeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence 2222222 799999999999 88999999 999999998654433332 36888999999
Q ss_pred EcCCC---eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 500 LLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 500 ~s~~~---~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
|+|++ .+++|+.|++|++||++++++...+.+|.+.|++++|+|+|+++++++.||.|++||+++++ .+..+
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-----~~~~~ 599 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-----KLYSL 599 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-----EEECC
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eEEEe
Confidence 99986 69999999999999999999999999999999999999999999999999999999999854 33322
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCC-----------------CCCCeEEEEEccCC
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYSCDG 639 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~-----------------h~~~v~~~~~sp~~ 639 (737)
. .+ ..|.+++|+|++.+++++.++.|++||++++..+..+..+. +...+++++|||+|
T Consensus 600 ~-~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 600 E-AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp B-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred c-CC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 2 22 57999999999999999888999999999998887764321 11247899999999
Q ss_pred CEEEEEecCCeEEEEEcCC
Q 004683 640 KCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd~~~ 658 (737)
++|++|+.||+|+||++..
T Consensus 675 ~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CEEEEEcCCCeEEEEeccC
Confidence 9999999999999999853
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-34 Score=311.30 Aligned_cols=287 Identities=16% Similarity=0.226 Sum_probs=230.3
Q ss_pred cCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg-~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
+.+ |...|.+++|+|+| ++|++|+.||+|++||+.+... .......+|...|.+++
T Consensus 69 ~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 69 ASP--FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK---------------------TSFIQGMGPGDAITGMK 125 (383)
T ss_dssp ECC--CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------EEEECCCSTTCBEEEEE
T ss_pred ccC--CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------ceeeecCCcCCceeEEE
Confidence 555 99999999999999 9999999999999999874322 11111125999999999
Q ss_pred Ee---CCEEEEEe-CCeEEEEECCCCcEEEEecCC---CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 461 LR---GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 461 ~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
|+ +++|++++ |+.|++||+.+ ..+..+..+ ...|.+++|+|++ .|++|+.|+.|++||+ +++.+..+.+|
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h 203 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH 203 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC
Confidence 98 47899999 99999999985 556666544 4789999999999 9999999999999999 57888999999
Q ss_pred CcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec-CCCEEEE-EecCcEEE
Q 004683 533 QNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDV 609 (737)
Q Consensus 533 ~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~-~~dg~I~i 609 (737)
...|.+++|+|+++ ++++++.|+.|++||+++.... ...+..+ +|. ..|.+++|+| ++++|++ +.|+.|++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~--~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM--PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE--ECS---SCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe--cCC---CceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 99999999999999 9999999999999999873211 1222322 344 7899999999 9999998 58999999
Q ss_pred EeCCCCceeEEecCCC-----CC----------CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCC
Q 004683 610 YEAPTLNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 674 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~-----h~----------~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g 674 (737)
||+++++....+..+. |. ..+..++|+|++++ +|+.||.|++||+.+++.+..+..+ +
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~-----~ 350 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP-----N 350 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT-----T
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC-----C
Confidence 9999888766665321 11 34445666777766 7778999999999999998888643 1
Q ss_pred CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 675 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 675 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+...+. +++|+| ++.+|++|+ ||.|+|||+.+
T Consensus 351 -~~~~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 -AAGIIS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -BCSCCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred -CCceEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 133333 779999 899999997 99999999975
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-34 Score=312.00 Aligned_cols=298 Identities=9% Similarity=0.052 Sum_probs=239.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+| ++|++|+.||+|++|++....... . ......+. +|...|.+++|
T Consensus 12 ~~~--h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~-----~----------~~~~~~~~--~h~~~v~~~~~ 70 (397)
T 1sq9_A 12 GKA--HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-----P----------KDKSYSHF--VHKSGLHHVDV 70 (397)
T ss_dssp SSC--SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-----G----------GGGEEEEE--CCTTCEEEEEE
T ss_pred hhh--hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc-----C----------CCcceEEe--cCCCcEEEEEE
Confidence 566 999999999999 799999999999999987543100 0 00111111 69999999999
Q ss_pred e-C--------CEEEEEe-CCeEEEEECCCCcE-----EEEecCC-----CCCeEEEEEc----CCC-e-EEEEECCCeE
Q 004683 462 R-G--------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSI 515 (737)
Q Consensus 462 s-~--------~~l~s~s-dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~-~-l~sgs~dg~I 515 (737)
+ . ++|++++ ||.|++||+.+++. ...+..| ...|.+++|+ |++ . |++|+.||.|
T Consensus 71 ~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 150 (397)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE
Confidence 9 6 6889988 99999999998887 8888888 5899999999 999 8 9999999999
Q ss_pred EEEecCC------CcEEE-----EE-------cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 516 LVHCPCT------KKTKA-----KL-------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 516 ~vwd~~~------~~~~~-----~l-------~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
++||+.+ ++.+. .+ ..|...|.+++|+|++ .+++++.||.|++||+++++ .+..+.
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~ 224 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLYNFE 224 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEEEEE
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----eeEEEe
Confidence 9999988 66555 66 4488999999999999 99999999999999999843 333222
Q ss_pred c--CC---CCCCCCeEEEEEecCCCEEEE-Eec---CcEEEEeCCCCceeEEecCCC-----------CCCCeEEEEEcc
Q 004683 578 T--GL---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSC 637 (737)
Q Consensus 578 ~--~~---~~~~~~v~~l~~sp~g~~l~~-~~d---g~I~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~sp 637 (737)
. +| . ..|.+++|+|++++|++ +.| +.|++||+++++++..+.... |...|.+++|+|
T Consensus 225 ~~~~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 225 SQHSMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp CCC---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred ccccccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC
Confidence 2 14 4 78999999999999998 478 999999999999988886521 688999999999
Q ss_pred CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCC--------------ccCceeeEEEEEccCCC----------C
Q 004683 638 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------N 693 (737)
Q Consensus 638 ~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~v~~sp~d~----------~ 693 (737)
++++|++++.||.|++||+.+++.+..+..+... .+| +... +.+++|+| ++ .
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~--v~~~~~~~-~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPG--VFDVKFLK-KGWRSGMGADLNE 377 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCC--EEEEEEEC-TTTSBSTTCTTSC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCc--eeEEEecc-ccccccccccccc
Confidence 9999999999999999999999998888721100 011 0333 45999999 66 7
Q ss_pred EEEEEECCCcEEEEecCCCc
Q 004683 694 RIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 694 ~las~s~Dg~V~iWd~~~~~ 713 (737)
+|++++.||.|++|++.+++
T Consensus 378 ~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 378 SLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEETTTEEEEEEEEC--
T ss_pred eEEEecCCCcEEEEEcCCCC
Confidence 99999999999999998763
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-36 Score=335.16 Aligned_cols=326 Identities=10% Similarity=0.000 Sum_probs=223.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC------CCEEEEEECCCcEEEeeccCC
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd------g~~L~s~s~dg~i~iWd~~~~ 420 (737)
.+|+++.+++++.|++|+||++........ ....+.+ |.+.|++++|+|+ +.+||+++.||+|++||+..+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE-EEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 467888889999999999999875321100 1122444 7889999999997 579999999999999998754
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCc-EEEEecCCCCCeEE
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 497 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~ 497 (737)
....+.. ..... ....+ .+|...|.+++|+ ++.|++|+ ||+|++||+.++. ....+.+|...|.+
T Consensus 246 ~~~~~~~--------~~~~~--p~~~l--~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 246 ATDVHVF--------KMCEK--PSLTL--SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SSSSSEE--------ECCCS--CSEEE--CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred ccccccc--------eeecC--ceEEE--EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 3200000 00000 00111 1699999999999 77999999 9999999998764 45668899999999
Q ss_pred E--EEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004683 498 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 498 ~--~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~--~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
+ +|+|++ .|++|+.|++|++||++++++...+.+|.. .|.+++|+|++..+++++.|++|++||++++.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----
Confidence 9 578886 789999999999999998887777766653 58899999999999999999999999999843
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC---CCCCCeEEEEEccCCCEEEEEec
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
.+.++ .+|. ..|++++|+|+|++|++ +.|++|++||+..+ .+...... .+...+.+++|+|+++.+ ....
T Consensus 389 ~~~~l-~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~ 462 (524)
T 2j04_B 389 AVHPL-VSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS 462 (524)
T ss_dssp CCEEE-EECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred cceee-ecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence 22322 3566 79999999999999998 58999999998653 22221110 112257899999999855 2222
Q ss_pred CCeEEEEEcC-CCeeEEEEecccccCCCCccCceeeEEEEEccCCC---CEEEEEECCCcEEEEecCC
Q 004683 648 SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 648 dg~I~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~V~iWd~~~ 711 (737)
.+.+|+.. ++.....+.+| ...|+ +|+|+| ++ ..+|+|+.||.|+||++.-
T Consensus 463 --~~~~~~~~~~g~~~~~l~gh--------~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 --SYEVYPLTVNDVSKAKIDAH--------GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --CCCCCC-------------C--------CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred --CceecccccCCcceeeecCC--------CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 23344332 35555555432 34455 999999 64 4999999999999999864
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-33 Score=311.66 Aligned_cols=304 Identities=13% Similarity=0.173 Sum_probs=247.9
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..++++++++|+.||+|++||+.. +.+... +.+ |.+.|.+++|+|++ +|++|+.||+|++||+.++
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~~-~~~--h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~------ 193 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSIN----KKFLLQ-LSG--HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG------ 193 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT----TEEEEE-ECC--CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT------
T ss_pred EEECCCEEEEEcCCCcEEEEECCC----CcEEEE-EeC--CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC------
Confidence 334678999999999999999984 444443 666 99999999999998 8999999999999987642
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCeEEEEECCCCcE-----------------
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT----------------- 484 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~i~vwd~~~~~~----------------- 484 (737)
..+..+. +|...|.+++|+ ++++++|+ ||+|++||+.++..
T Consensus 194 ---------------~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 194 ---------------CCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp ---------------EEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred ---------------cEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 2222222 699999999997 57899999 99999999987652
Q ss_pred ------EEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcE
Q 004683 485 ------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 485 ------~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I 557 (737)
+..+.+|...|.++ ++++ .+++|+.|+.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 334 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 55677888888876 5678 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
++||+++++ .+.. ..+|. ..|.+++|+ +.++++ +.||.|++||+.++....... +...+..++|+
T Consensus 335 ~vwd~~~~~-----~~~~-~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~ 400 (464)
T 3v7d_B 335 RIWDLENGE-----LMYT-LQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFY 400 (464)
T ss_dssp EEEETTTTE-----EEEE-ECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEE
T ss_pred EEEECCCCc-----EEEE-EeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEE
Confidence 999999853 3442 33555 789999997 467887 689999999999888766653 46678889999
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 637 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 637 p~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
|+++++++|+ ||.|++||+.+++.+..+.. +| ...+ .+++|++ ..++++++.||.+.+|-+
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v--~~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQI--WSVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEE--EEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcE--EEEEecC--CEEEEEEEeCCeEEEEEe
Confidence 9999999998 89999999999998765322 11 3334 4899974 467777778887666543
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-34 Score=307.10 Aligned_cols=291 Identities=14% Similarity=0.154 Sum_probs=232.5
Q ss_pred CCCCeEEEEEecC----CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe
Q 004683 387 FGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 462 (737)
Q Consensus 387 h~~~V~~v~fspd----g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s 462 (737)
|.+.|.+++|+|+ ...+++++.++.|++|++.++.. ...+ .......|...|.+++|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----~~~~-------------~~~~~~~~~~~v~~~~~~ 78 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----IRLL-------------QSYVDADADENFYTCAWT 78 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----EEEE-------------EEEECSCTTCCEEEEEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----EEee-------------eeccccCCCCcEEEEEec
Confidence 9999999999984 45677777778999999874322 1111 111111378899999999
Q ss_pred -C-----CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCCcEEEEE---c
Q 004683 463 -G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL---K 530 (737)
Q Consensus 463 -~-----~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l---~ 530 (737)
. .+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++|+.||.|++||+++++.+..+ .
T Consensus 79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred cCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 3 4788888 99999999999999999999999999999999 77 9999999999999999999999888 6
Q ss_pred CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeecee----------------------eeecccCCCCCCCCeE
Q 004683 531 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------LHSFQTGLVPETTIVN 588 (737)
Q Consensus 531 ~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~----------------------~~~~~~~~~~~~~~v~ 588 (737)
+|...|.+++|+|+++++++++.||.|++||+++++...... ......+|. ..|.
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 235 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVD 235 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCCC
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceEE
Confidence 899999999999999999999999999999999753221100 000112244 7899
Q ss_pred EEEEecCCCEEEEE-ecCcEEEEeCCCCce--------------eEEecCCCCCCCeEEEEEccC--CCEEEEEecCCeE
Q 004683 589 HIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHV 651 (737)
Q Consensus 589 ~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~--------------~~~~~~~~h~~~v~~~~~sp~--~~~l~sgs~dg~I 651 (737)
+++|+ +++++++ .|+.|++||+.++.. +..+.. |...|++++|+|+ +++|++|+.||.|
T Consensus 236 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 236 CVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp EEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 99999 6788874 899999999987644 555544 6788999999999 9999999999999
Q ss_pred EEEEcCCCeeEE----EEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 652 KVFDTSTLELRC----QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 652 ~vwd~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
++||+.+++... .+..+ + +... +.+++|+| ++.+|++++.||.|++||+.+
T Consensus 312 ~vwd~~~~~~~~~~~~~~~~~-----~-~~~~--v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 312 YVWDLEVEDPHKAKCTTLTHH-----K-CGAA--IRQTSFSR-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCSSSGGGCEEEEECCT-----T-CCSC--EEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred EEEECCCCCCccccceEEccc-----c-cCCc--eEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence 999999986432 44322 1 1233 45999999 899999999999999999853
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.5e-33 Score=293.72 Aligned_cols=275 Identities=12% Similarity=0.063 Sum_probs=233.6
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
...++|+|+++++++ ||.|++|++...............+ |...|.+++|+|++++|++++.|+.|++|++.+...
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~- 131 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP- 131 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-
Confidence 345889999999999 9999999998643222333322224 899999999999999999999999999999774321
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 500 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 500 (737)
....... +|...|.+++|+ ++++++++ ||.|++||+.+++.+..+.+|...|.+++|
T Consensus 132 ------------------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 191 (337)
T 1gxr_A 132 ------------------RIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp ------------------EEEEEEE--CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ------------------ceeeecc--cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence 0111111 588999999999 88999999 899999999999999999999999999999
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
+|++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++. .. ...
T Consensus 192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~--~~~ 263 (337)
T 1gxr_A 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQ--LHL 263 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EE--ECC
T ss_pred CCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EE--EcC
Confidence 9999 99999999999999999998888775 778899999999999999999999999999998532 12 234
Q ss_pred CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 580 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
|. ..|.+++|+|+++++++ +.||.|++||+.+++.+.... |...+.+++|+|++++|++++.||.|++|++
T Consensus 264 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred Cc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 44 78999999999999998 589999999999998875543 5788999999999999999999999999996
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-34 Score=311.04 Aligned_cols=290 Identities=11% Similarity=0.136 Sum_probs=238.8
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCcEEEeec----cCCcccccccceeeeeEEeecCCCeeeeecc-----CCCCCCCe
Q 004683 387 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNMESQLYQPSSKLVMTNDI-----AADPKDSI 456 (737)
Q Consensus 387 h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~----~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~-----~~~h~~~V 456 (737)
|.+.|.+++|+|+|+ +|++|+.||.|++|++ .++.. +|+........... ..+|...|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK------------YWKLTIIAELRHPFALSASSGKTTNQV 111 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------------------CEEEEEEEEEECCCCCC------CBCE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc------------cccccccccccccccccccccCCCCce
Confidence 779999999999999 9999999999999998 54321 01111000010000 01378899
Q ss_pred EEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 457 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 457 ~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
.+++|+ +++|++++ ||.|++|| .+++.+..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..+
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 999999 88999999 99999999 6788999999999999999999999 9999999999999999999999999887
Q ss_pred Ccc---------------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 533 QNR---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 533 ~~~---------------v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
... +.+++|+|++ .+++++.||.|++||++++. .+. ...+|. ..|.+++|+|+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----PTG-KLIGHH---GPISVLEFNDTNK 260 (425)
T ss_dssp ---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----CSE-EECCCS---SCEEEEEEETTTT
T ss_pred ccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----eee-eeccCC---CceEEEEECCCCC
Confidence 776 9999999985 58889999999999999843 233 223454 7899999999999
Q ss_pred EEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc
Q 004683 598 HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 598 ~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
+++++ .|+.|++||+++++.+..+.. |...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------- 329 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-------- 329 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--------
T ss_pred EEEEEcCCCEEEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--------
Confidence 99984 799999999999998888854 68899999999999 9999999999999999999988887643
Q ss_pred cCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 677 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 677 ~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
...+ .+++|+| ++.+|++++.||.|++|++.+++
T Consensus 330 ~~~i--~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 330 GVPI--FAGRISQ-DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TCCE--EEEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred CccE--EEEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence 3334 4999999 89999999999999999998776
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-34 Score=305.69 Aligned_cols=298 Identities=10% Similarity=0.092 Sum_probs=236.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.++|.+++|+|+|++|++++.|+.|++|++.+... .....+. +|...|.+++|+ ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~--~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELK--EHNGQVTGVDWAPDSN 65 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEE--CCSSCEEEEEEETTTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------Eeeeeec--CCCCcccEEEEeCCCC
Confidence 789999999999999999999999999999764310 0112122 699999999999 88
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEe--cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE---E-EEEcCCCcce
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---K-AKLKGHQNRI 536 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~---~-~~l~~~~~~v 536 (737)
+|++++ ||.|++||+.+++....+ ..|...|.+++|+|++ .+++|+.|+.|++||++++.. . ....+|...|
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 999999 999999999888755544 5788999999999999 999999999999999988762 3 3336689999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-------------eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E
Q 004683 537 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 602 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~ 602 (737)
.+++|+|+++++++++.||.|++||++.... .....+.. ..+|. ..|.+++|+|++++|++ +
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSC---GWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe-cCCCC---CeEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999999752110 01223332 23454 78999999999999998 5
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC--Cee--EEEEec-----------
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LEL--RCQINL----------- 667 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~--~~~--~~~~~~----------- 667 (737)
.|+.|++||+++++++..+.. |...|.+++|+|++.++++| .|+.|++|++.+ ++. ...+..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 899999999999999988875 57899999999999988888 899999999988 531 111100
Q ss_pred -----------c--------cccCCCCccCceeeEEEEEccCCC---CEEEEEECCCcEEEEecCCCcee
Q 004683 668 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 668 -----------~--------~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~V~iWd~~~~~~~ 715 (737)
. .....|| ...+. +++|+|.++ .+|++|+.||.|++|++.+++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 0111244 33444 999886477 99999999999999999876543
No 56
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-33 Score=303.23 Aligned_cols=293 Identities=12% Similarity=0.108 Sum_probs=217.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCC-------cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg-------~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
..+|++++|+|||++|++||.+. .|++|++............ ........+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------------ILSEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------------EEEEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------------eeeEEEccCCCCceEEEE
Confidence 46899999999999999998643 5999998754320000000 000111126888999999
Q ss_pred EeCCEEEEE-----------e-CCeEEEEECCCCcEE----EEe-----cCCCCCeEEEEEcCCC-eEEEE--ECCCeEE
Q 004683 461 LRGSHLFSA-----------S-GGKISIFSLETFQTL----ATF-----ANPPPIATYFILLPQD-LFAFG--FDDSSIL 516 (737)
Q Consensus 461 ~s~~~l~s~-----------s-dg~i~vwd~~~~~~~----~~~-----~~~~~~v~~~~~s~~~-~l~sg--s~dg~I~ 516 (737)
++++.+++| + |+.+++|++.+.... ... ..+...+.+++|+||| +++++ +.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 987777765 3 568999998654321 111 1344568899999999 76544 4789999
Q ss_pred EEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC
Q 004683 517 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g 596 (737)
+||+.+++++..+. |...|.+++|+|+|+++++++.+ .+++|+..++... ......+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~----~~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI----ARKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE----EEECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcce----eeeecCCCC---CCEEEEEEcCCC
Confidence 99999999998886 77889999999999999999855 5666666654322 122334455 689999999999
Q ss_pred CEEEE-EecC----cEEEEeCCCCcee--EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccc
Q 004683 597 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 669 (737)
Q Consensus 597 ~~l~~-~~dg----~I~iwd~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 669 (737)
+.+++ +.++ .+++|++...... .......|...|++++|||||++||+|+.|++|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 99998 4555 5888998765432 1112224688999999999999999999999999999999998877531
Q ss_pred ccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 670 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 670 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
|| ...|+ +++|+| |+.+|||||.|++|+||++...
T Consensus 310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 33 33455 999999 8999999999999999999643
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=290.70 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=235.0
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++| |++++|++|+.||.|++||+.+.. ...... .|...|.+++|
T Consensus 14 l~~--h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------~~~~~~--~~~~~v~~~~~ 67 (313)
T 3odt_A 14 LKG--HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------LGTVVY--TGQGFLNSVCY 67 (313)
T ss_dssp ECC--CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------EEEEEE--ECSSCEEEEEE
T ss_pred hhC--CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------EEEEee--cCCccEEEEEE
Confidence 666 9999999999 999999999999999999976421 111111 58899999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCC---cEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc
Q 004683 462 R--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
+ ++++++++ ||.|++|++... +....+.+|...|.+++| ++ .+++++.|+.|++|| .++....+..|..
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 9 88999999 999999998654 567788899999999999 56 999999999999999 6788888999999
Q ss_pred ceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeC
Q 004683 535 RITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 612 (737)
Q Consensus 535 ~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~ 612 (737)
.+.++.|.| +++.+++++.||.|++||... ....+...|. ..+.+++|+|++. +++ +.||.|++||+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDM 212 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEET
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEEC
Confidence 999999988 999999999999999999442 2332333354 7899999999999 555 69999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
++++++..+.. |...|++++|+|++ .+++++.||.|++||+.+++....+..+ ...+. +++|+| ++
T Consensus 213 ~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~~~i~--~~~~~~-~~ 278 (313)
T 3odt_A 213 HTGDVLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------AISIW--SVDCMS-NG 278 (313)
T ss_dssp TTCCEEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--------SSCEE--EEEECT-TS
T ss_pred Cchhhhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--------CceEE--EEEEcc-CC
Confidence 99999988865 68899999999999 5889999999999999999988888643 33444 999999 67
Q ss_pred CEEEEEECCCcEEEEecCCCce
Q 004683 693 NRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~~~~~ 714 (737)
. +++++.||.|++|++.+++.
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGC
T ss_pred C-EEEEeCCCcEEEEeCCCCce
Confidence 7 66799999999999987654
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=305.64 Aligned_cols=287 Identities=14% Similarity=0.126 Sum_probs=228.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEE-EEEC---CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS 457 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~-s~s~---dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~ 457 (737)
+.+ |...|.+++|+|+|..++ +|+. |++|++|++.++.. ...... +|...|.
T Consensus 14 ~~~--h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~---------------------~~~~~~-~~~~~v~ 69 (357)
T 3i2n_A 14 QKG--FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL---------------------KLLREI-EKAKPIK 69 (357)
T ss_dssp EEE--CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE---------------------EEEEEE-EESSCEE
T ss_pred ccC--CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc---------------------cceeee-cccCcEE
Confidence 455 999999999999997665 5554 89999999774322 111000 4889999
Q ss_pred EEEEe-C----CEEEEEe-CCeEEEEECCCCc-EEEEecCCCCCeEEEEE------cCCC-eEEEEECCCeEEEEecCCC
Q 004683 458 CFALR-G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 458 ~v~~s-~----~~l~s~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------s~~~-~l~sgs~dg~I~vwd~~~~ 523 (737)
+++|+ . +++++|+ ||.|++||+.+++ .+..+.+|...|.++.| +|++ .|++|+.||.|++||+.++
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 99999 4 8899999 9999999999988 88899999999999955 6788 9999999999999999988
Q ss_pred c-EEEEEcCCCc----ceEEEE----EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 524 K-TKAKLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 524 ~-~~~~l~~~~~----~v~~l~----~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
. .+..+..|.+ .+.+++ |+|+++++++++.||.|++||+++++. .. ...|. ..|.+++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~---~~v~~~~~~~ 219 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RW--ETNIK---NGVCSLEFDR 219 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EE--EEECS---SCEEEEEESC
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----ee--ecCCC---CceEEEEcCC
Confidence 7 6777766554 788988 688999999999999999999998543 22 12333 6899999999
Q ss_pred ---CCCEEEE-EecCcEEEEeCCCCceeEEec---CCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCee-----
Q 004683 595 ---DQIHLLS-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL----- 661 (737)
Q Consensus 595 ---~g~~l~~-~~dg~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~~~----- 661 (737)
++.++++ +.||.|++||+++++....+. ...|...|++++|+|+++ ++++|+.||.|++||+.++..
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 8999998 589999999998776654443 113689999999999998 899999999999999986542
Q ss_pred --------------EEEEecccccCCCCccCceeeEEEEEccCCCCEEE-EEECCCcEEEEecCCCc
Q 004683 662 --------------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 713 (737)
Q Consensus 662 --------------~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~Dg~V~iWd~~~~~ 713 (737)
+..+. +| ...+. +++|+| ++.+|+ +++.||.|+||++.+.+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVT-------LS-TQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEE-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCccccccccceeeccc-------cC-CCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 33333 22 33444 999999 788887 89999999999998754
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-34 Score=319.26 Aligned_cols=289 Identities=16% Similarity=0.203 Sum_probs=222.6
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004683 387 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 462 (737)
Q Consensus 387 h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 462 (737)
|...|+|++|+| ++.+||+|+.||+|+|||+..... .... ...+|.+.|++++|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------~~~~--~~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------PTFI--KGIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------------------CEEE--CCCSSSCCCCEEEECSSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------------------eeEE--EccCCCCCEEEEEEeCCC
Confidence 788999999999 567899999999999999764321 0111 112699999999998
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
+++|++|+ ||+|++||+.++....... .+...+.+++|+|++ +|++|+.||.|++||+++ +.+..+.+|...|.+
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEe
Confidence 67999999 9999999998655433333 334467899999999 999999999999999864 567778899999999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCc
Q 004683 539 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 616 (737)
Q Consensus 539 l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~ 616 (737)
++|+|++. ++++++.|+.|++||+++..... .+. ...+|. ..|++++|+|+|.+|++ +.||.|++||+.++.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 99999876 78899999999999998743221 111 234555 78999999999999998 589999999999988
Q ss_pred eeEEecCCCC----CCCeEEEEEccCCCEEEEEe------------cCCeEEEEEcCCCeeEEEEecccccCCCCccCce
Q 004683 617 HTSQLVPDKM----DLPITYATYSCDGKCIYVSC------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 617 ~~~~~~~~~h----~~~v~~~~~sp~~~~l~sgs------------~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v 680 (737)
....+..+.+ ...+....|+|++.++++++ .++.|++||..+++.+..+.. + +...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~------~-~~~~v 402 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD------P-ESSGI 402 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC------S-SCCCC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC------C-CCCcE
Confidence 8777654322 12344567788777777664 346799999999998887642 2 23334
Q ss_pred eeEEE-EEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 681 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 681 ~~~~v-~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
. ++ +|+| ++.+||+|+ |++|+||++.+++.
T Consensus 403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp C--CEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 4 55 7999 899999876 78999999998864
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=305.21 Aligned_cols=324 Identities=10% Similarity=0.067 Sum_probs=223.2
Q ss_pred cccCC-CCCEEEEEecCCeEEEeecCccCCCCceeeee---cC---CCCCCCCeEEEEEec-CCCEEEEEECCCcEEEee
Q 004683 345 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL---LP---DNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 416 (737)
Q Consensus 345 ~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~---l~---~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd 416 (737)
+.++| +|+++++++.||.|++|++............. .. ..+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 33888 99999999999999999998643222211100 00 023899999999999 788999999999999998
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCeEEEEECCCCcEEEEecC
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFAN 490 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~i~vwd~~~~~~~~~~~~ 490 (737)
+.+.. ..... .+...+.+++|+ +.++++++ +|.|++||+.+++.+..+.+
T Consensus 129 ~~~~~---------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 129 TNTLQ---------------------TADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp TTTTE---------------------EEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred CCCCc---------------------cceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 77432 22221 267788899998 34888888 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCc-EEEEE---------------cCCCcceEEEEEeCCCCEEEEEe
Q 004683 491 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 491 ~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~-~~~~l---------------~~~~~~v~~l~~sp~g~~l~s~s 552 (737)
|...|.+++|+|++ .+++|+.||.|++||++++. ++..+ .+|...|.+++|+|+++++++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999999999999 48999999999999998765 34444 56889999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEE
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 632 (737)
.||.|++||+.+++............... .........+.+.+++++.++.|++||+.+++++..+.+ |...|++
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~ 339 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKK---GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDC 339 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSS---CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEE
T ss_pred CCCeEEEEECCCCccceeccccccccccc---cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEE
Confidence 99999999999854322111110011111 122233333445555567999999999999999998865 6899999
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
++|+|++++|++|+.||.|++||+.+++.+...... .. ...++|.....+.+++.|+.+++|+..
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCc
Confidence 999999999999999999999999999876654321 11 233444345567778899999999865
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-35 Score=313.49 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=193.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.++|.+++|+|+|++|++|+.|++|++|++.+... .....+. +|...|.+++|+ ++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~~~--~h~~~v~~~~~s~~~~ 68 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHARTFS--DHDKIVTCVDWAPKSN 68 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCCBC--CCSSCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEEEe--cCCceEEEEEEeCCCC
Confidence 567999999999999999999999999998764210 1112122 699999999999 88
Q ss_pred EEEEEe-CCeEEEEECCCCc---EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc---EEEEEcC-CCcc
Q 004683 465 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR 535 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~---~~~~l~~-~~~~ 535 (737)
+|++++ ||+|++||+.+++ ....+.+|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 999999 9999999999877 677788999999999999999 99999999999999999887 4677887 9999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-------------eceeeeecccCCCCCCCCeEEEEEecCCCEEEE-
Q 004683 536 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 601 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~- 601 (737)
|.+++|+|+++++++++.|+.|++||++..... ....+..+ +|. ..|.+++|+|+|++|++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSG---GWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCS---SSEEEEEECTTSSCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCC---ceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999643211 12333333 565 78999999999999998
Q ss_pred EecCcEEEEeCCCCce----eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 602 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 602 ~~dg~I~iwd~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
+.|+.|++||+.+++. +..+.. |...|.+++|+|++++|++|+.++.+ +|+..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eCCCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 5899999999999887 666654 68899999999999999999877766 66654
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=296.33 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=235.8
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.++|+|+++++++.||.|++|++.. +..... +.+ |...|.+++|+|++++|++++.||+|++||+.++.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~-~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--- 107 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLN----GERLGT-LDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ--- 107 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCC----chhhhh-hhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Confidence 44889999999999999999999884 444443 666 89999999999999999999999999999876432
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-----CeEEEEECCCCc-----------EE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ-----------TL 485 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-----g~i~vwd~~~~~-----------~~ 485 (737)
.+... .+...|.+++|+ ++++++++ + |.|++||+.++. ..
T Consensus 108 ------------------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 108 ------------------CVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp ------------------EEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred ------------------EEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 22222 277889999999 88999988 7 999999987653 34
Q ss_pred EEecCCCC--CeEEEEEcCCC-eEEEEECCCeEEEEecCC-CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 486 ATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 486 ~~~~~~~~--~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~-~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
..+..|.. .+.+++|+|++ .+++|+.||.|++||+++ ++.+..+..|...|.+++|+|+++++++++.||.|++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 45556666 89999999999 999999999999999998 788899999999999999999999999999999999999
Q ss_pred CCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC--------------cEEEEeCCCCceeEEecCCCC
Q 004683 562 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg--------------~I~iwd~~~~~~~~~~~~~~h 626 (737)
++++.. +..+. +. ..+..++|+|++++++++ .++ .+++||..+++.+..+.. |
T Consensus 247 ~~~~~~-----~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~ 314 (369)
T 3zwl_B 247 VSTLQV-----LKKYE--TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--H 314 (369)
T ss_dssp TTTCCE-----EEEEE--CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--C
T ss_pred CCCCce-----eeeec--CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--c
Confidence 998543 33222 22 689999999999999984 566 799999999999988865 6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
...|++++|+|++++|++++.||.|++|++.++.....+
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 889999999999999999999999999999877654433
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=290.19 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=229.7
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+ |+++++++++.||.|++|++.. +.+... +.+ |...|.+++|+|++++|++++.||.|++|++...
T Consensus 26 ~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~------ 91 (313)
T 3odt_A 26 A-VDDSKVASVSRDGTVRLWSKDD----QWLGTV-VYT--GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT------ 91 (313)
T ss_dssp E-EETTEEEEEETTSEEEEEEESS----SEEEEE-EEE--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC------
T ss_pred e-cCCCEEEEEEcCCcEEEEECCC----CEEEEE-eec--CCccEEEEEECCCCCEEEEecCCCeEEEEEeeec------
Confidence 5 7889999999999999999974 444333 444 8999999999999999999999999999997642
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC-CC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD 504 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 504 (737)
..+....... +|...|.+++|+++++++++ ||.|++|| .++....+..|...+.++.|+| ++
T Consensus 92 ------------~~~~~~~~~~--~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 92 ------------SGEDPLYTLI--GHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp ------------TTSCC-CEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred ------------CCCCcccchh--hcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 2222222222 69999999999988999999 99999999 6888888999999999999988 77
Q ss_pred -eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 505 -LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 505 -~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
.+++++.|+.|++|| .++....+.. |...+.+++|+|++. +++++.||.|++||+++++ .+.. ..+|.
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-----~~~~-~~~~~- 225 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-----VLRT-YEGHE- 225 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-----EEEE-EECCS-
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-----hhhh-hhcCC-
Confidence 999999999999999 4567777877 899999999999998 9999999999999999853 3332 23455
Q ss_pred CCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeE
Q 004683 583 ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
..|.+++|+|++.+++++.||.|++||+++++++..+.. |...|.+++|+|+++ +++++.||.|++||+.+++..
T Consensus 226 --~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 --SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp --SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred --ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 789999999999644447999999999999999988865 578999999999998 567899999999999988766
Q ss_pred EEE
Q 004683 663 CQI 665 (737)
Q Consensus 663 ~~~ 665 (737)
...
T Consensus 301 ~~~ 303 (313)
T 3odt_A 301 SED 303 (313)
T ss_dssp C--
T ss_pred ehh
Confidence 544
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-33 Score=303.76 Aligned_cols=278 Identities=14% Similarity=0.190 Sum_probs=228.9
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
+++..+++++.|+.|++|++.. +.+....... |...|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 101 ~s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------- 166 (401)
T 4aez_A 101 WSNLNVVAVALERNVYVWNADS----GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------- 166 (401)
T ss_dssp ECTTSEEEEEETTEEEEEETTT----CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------
T ss_pred ecCCCEEEEECCCeEEEeeCCC----CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--------
Confidence 3456688999999999999985 4444432222 7899999999999999999999999999987642
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECC-CCcEEEEecCCCCCeEEEEEcCCC-e
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-L 505 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~-~ 505 (737)
..+..+. +|...|.+++|+++++++++ ||.|++||+. .+..+..+.+|...|.+++|+|++ .
T Consensus 167 -------------~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 167 -------------TKLRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231 (401)
T ss_dssp -------------CEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred -------------eEEEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE
Confidence 2222222 69999999999988999999 9999999998 567788889999999999999999 9
Q ss_pred EEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC-EEEEEe--CCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 506 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 506 l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~-~l~s~s--~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. .+++++ .|+.|++||+.++.. +..+.. .
T Consensus 232 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~~~~~~--~- 303 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----VNTVDA--G- 303 (401)
T ss_dssp EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----EEEEEC--S-
T ss_pred EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----EEEEeC--C-
Confidence 99999999999999999999999999999999999999764 566654 799999999998543 332322 2
Q ss_pred CCCCeEEEEEecCCCEEEE--E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 583 ETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~--~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
..|.+++|+|+++++++ + .||.|++||+.++..........|...|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 --~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 --SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp --SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred --CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 68999999999999998 3 689999999998776655443457899999999999999999999999999999999
Q ss_pred eeEEEE
Q 004683 660 ELRCQI 665 (737)
Q Consensus 660 ~~~~~~ 665 (737)
+.+...
T Consensus 382 ~~~~~~ 387 (401)
T 4aez_A 382 DHVKRP 387 (401)
T ss_dssp ------
T ss_pred cccccc
Confidence 876654
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-33 Score=331.34 Aligned_cols=326 Identities=13% Similarity=0.129 Sum_probs=258.8
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
.+.|+|||+++|+++.||.|++||+.. +..... +.+ |...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~~-~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--- 87 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYET----QVEVRS-IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--- 87 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT----TEEEEE-EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCC----CceEEE-Eec--CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence 345899999999999999999999884 444333 555 8999999999999999999999999999987643
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC-cEEEEecCCCCCeEEEE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI 499 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 499 (737)
..+..+. +|...|.+++|+ ++++++++ ||.|++||+.++ .....+.+|...|.+++
T Consensus 88 ------------------~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 88 ------------------EKVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp ------------------CEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred ------------------cEEEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 2222222 699999999999 88999999 899999999887 67788889999999999
Q ss_pred EcC-CC-eEEEEECCCeEEEEecCCCcEEEEEcCCC-cceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004683 500 LLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 500 ~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~-~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
|+| ++ .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+.++. .+.
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~ 222 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA 222 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEE
Confidence 999 77 99999999999999999888777776554 8899999999 99999999999999999998843 333
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCE-EEEEecCCeEE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVK 652 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~sgs~dg~I~ 652 (737)
. ..+|. ..|.+++|+|++.++++ +.||.|++||+.+++.+..+.. +...+.+++|+|++.. +++++.++.+.
T Consensus 223 ~-~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 223 T-LEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp E-EECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred E-EcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 2 23454 68999999999999998 4799999999999999888865 5789999999999873 24444577788
Q ss_pred EEEcCCCeeEEEEecccc-c-----------------------CCCC---------ccCceeeEEEEEccCCCCEEEEEE
Q 004683 653 VFDTSTLELRCQINLTAY-A-----------------------QPGT---------ISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 653 vwd~~~~~~~~~~~~~~~-~-----------------------~~g~---------~~~~v~~~~v~~sp~d~~~las~s 699 (737)
+|++..+.....+.+... . ..+. ......+.+++|+| ++.++++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~ 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec
Confidence 999876543332221100 0 0000 01112245899999 788888887
Q ss_pred CCCcEEEEecCCC
Q 004683 700 TNGRVHVIEPLES 712 (737)
Q Consensus 700 ~Dg~V~iWd~~~~ 712 (737)
||.+.+|++...
T Consensus 376 -~~~~~i~~~~~~ 387 (814)
T 3mkq_A 376 -DGEYVIYTALAW 387 (814)
T ss_dssp -TTEEEEEETTTT
T ss_pred -CCEEEEEECccc
Confidence 888999997643
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-33 Score=303.02 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=231.3
Q ss_pred cCCCCCCCCe--EEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 382 LPDNSFGGRV--VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 382 l~~~~h~~~V--~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
.++ |...+ .+++|++ ..+++++.|++|++|++.++.. ...... .|...|.++
T Consensus 87 ~~~--~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------~~~~~~-~~~~~v~~v 140 (401)
T 4aez_A 87 APG--IIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------SALAET-DESTYVASV 140 (401)
T ss_dssp CTT--CCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------EEEEEC-CTTCCEEEE
T ss_pred CCC--CcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------eEeeec-CCCCCEEEE
Confidence 444 55554 4455554 5688999999999998764322 111111 388999999
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC-CCcEEEEEcCCCc
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQN 534 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~-~~~~~~~l~~~~~ 534 (737)
+|+ +++|++|+ ||.|++||+.+++.+..+.+|...|.+++| ++ .+++|+.||.|++||++ .+..+..+.+|..
T Consensus 141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 999 88999999 999999999999999999999999999999 45 99999999999999998 5677888999999
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-EE---ecCcEEEE
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI---HEGQIDVY 610 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~~---~dg~I~iw 610 (737)
.|.+++|+|+++++++++.||.|++||++++. .+.. ..+|. ..|.+++|+|++..++ ++ .|+.|++|
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~-~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFT-KTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEE-ECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEE-ecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 99999999999999999999999999999843 3332 23454 7899999999875544 44 48999999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEc
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s--gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
|+.+++++..+. +...|.+++|+|+++++++ |+.||.|++||+.+++........ +| ...+. +++|+
T Consensus 290 d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s 358 (401)
T 4aez_A 290 NAATGARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALS 358 (401)
T ss_dssp ETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEEC
T ss_pred ECCCCCEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEEC
Confidence 999999988885 3678999999999999998 448999999999997766554322 22 33444 99999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 689 PLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
| ++.+|++++.||.|++|++.+++.....
T Consensus 359 ~-dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 359 P-DGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp T-TSSEEEEECTTSEEEEEECCC-------
T ss_pred C-CCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9 8999999999999999999998866544
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-34 Score=315.75 Aligned_cols=287 Identities=12% Similarity=0.115 Sum_probs=215.9
Q ss_pred ccccCC-CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCc
Q 004683 344 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 344 ~~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
.+.|+| ++.+||+|+.||+|+|||+... .......+.+ |.+.|.+++|+| ++.+|++||.||+|++||+.+..
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTFIKGIG--AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCC---SCCEEECCCS--SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCC---CceeEEEccC--CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 344777 5678999999999999999852 2222222444 999999999998 78999999999999999976421
Q ss_pred ccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 422 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 422 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
. ........+...+.+++|+ +++|++|+ ||.|++||+. ++.+..+.+|...|.++
T Consensus 199 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 199 L---------------------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp E---------------------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred e---------------------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 1 1111111345667889999 88999999 9999999986 56677888999999999
Q ss_pred EEcCCC--eEEEEECCCeEEEEecCCCcEEEE---EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 499 ILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 499 ~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~---l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
+|+|++ .+++|+.|+.|++||+++++.... ..+|...|++++|+|+|++|++++.||.|++||+.++........
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 999998 788999999999999988664433 356899999999999999999999999999999998654332211
Q ss_pred eecccCCCCCCCCeEEEEEecCCCEEEEE-------------ecCcEEEEeCCCCceeEEecCCCCCCCeEEE-EEccCC
Q 004683 574 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCDG 639 (737)
Q Consensus 574 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~-~~sp~~ 639 (737)
+....... ..+....|+|++..++++ .++.|++||..+++.+..+.. +|...|.++ +|+|+|
T Consensus 337 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 337 HPHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMG 412 (435)
T ss_dssp CCCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTS
T ss_pred cccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCC
Confidence 10000000 123345566666655543 235799999999999888765 367788887 699999
Q ss_pred CEEEEEecCCeEEEEEcCCCeeE
Q 004683 640 KCIYVSCKSGHVKVFDTSTLELR 662 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd~~~~~~~ 662 (737)
++|++|+ |+.|+||++++++..
T Consensus 413 ~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 413 DTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SCEEEEC-SSEEEECCCC-----
T ss_pred CEEEEEc-CCcEEEEECCcCeee
Confidence 9999876 789999999998753
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.9e-33 Score=297.78 Aligned_cols=284 Identities=12% Similarity=0.106 Sum_probs=224.6
Q ss_pred cccCCCC-CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcc
Q 004683 345 STSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 345 ~~~spdg-~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
+.|+|+| +++++|+.|+.|++|++... .......+.+ |...|.+++|+| ++.+|++++.|++|++||+.+...
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQ---NKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTST---TCEEEECCCS--TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCc---ccceeeecCC--cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 3488998 99999999999999999852 2222222334 999999999999 789999999999999999773211
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 499 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 499 (737)
.......+|...|.+++|+ ++++++++ ||.|++||+ +++.+..+.+|...|.+++
T Consensus 154 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 154 ---------------------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp ---------------------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred ---------------------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 1111111466889999999 89999999 999999999 5888999999999999999
Q ss_pred EcCCC--eEEEEECCCeEEEEecCC----CcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004683 500 LLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 500 ~s~~~--~l~sgs~dg~I~vwd~~~----~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~ 572 (737)
|+|++ .+++|+.|+.|++||+++ +.++..+ +|...|.+++|+| +++++++++.|+.|++||++++.......
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99999 799999999999999997 6677767 5999999999999 99999999999999999999865432211
Q ss_pred eee-cccCCCC-------CCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE
Q 004683 573 LHS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 573 ~~~-~~~~~~~-------~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 644 (737)
... ....|.. +...+..++|+|+|++ .++.|+.|++||+.+++++..+..+.|...+..++|+|++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 110 0011110 0023444666666665 224789999999999999999987656788888899999999999
Q ss_pred EecCCeEEEEEcCC
Q 004683 645 SCKSGHVKVFDTST 658 (737)
Q Consensus 645 gs~dg~I~vwd~~~ 658 (737)
|+ ||.|++||+++
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999875
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-33 Score=306.25 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=229.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
..+.+++|+|+|++|++++.|+.|++|++.+... .... ..| ..+....|+ +++|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---------------------~~~~--~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---------------------SKML--KRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET---------------------TTTS--CSC-CEEEEEEECSSSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce---------------------eeEE--ecC-CceEEEEEecCCCEE
Confidence 3456899999999999999999999999764321 0000 023 334444566 8899
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
++|+ ||.|++||+.+++....+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999 9999999999999988889999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC------------------CCCCeEEEEEecCCCEEEE-EecC
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLS-IHEG 605 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~l~~sp~g~~l~~-~~dg 605 (737)
++++++++.||.|++||+++++....... ...+.. +...+.+++|+|+++++++ +.||
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNR---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECB---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeec---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999998644322111 111110 0134455556789999998 4899
Q ss_pred cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCee-EEEEecccccCCCCccCceeeE
Q 004683 606 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
.|++||+++++.+..+.. .|...|++++|+|+++ +|++|+.||.|++||+.+++. +..+.. |+...+.
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~v~-- 339 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------NEGTPIN-- 339 (420)
T ss_dssp CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-------STTSCEE--
T ss_pred eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-------cCCCCce--
Confidence 999999999988877754 4688999999999998 999999999999999998754 555543 2244444
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++.| | ++.+|++++.||.|++|++..++
T Consensus 340 ~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 340 NVYF-A-AGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEE-E-TTEEEEEETTTEEEEEEEECCTT
T ss_pred EEEe-C-CCCEEEEecCCccEEEEeccCCC
Confidence 6644 5 57899999999999999998743
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-32 Score=301.53 Aligned_cols=279 Identities=16% Similarity=0.202 Sum_probs=229.2
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
++||++ +.||+|. |++|+|||..+ +.+... +..++|...|++|+|+|+|++|++|+.||+|+|||+.++
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~t----g~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---- 179 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---- 179 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCC----CCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----
Confidence 458875 4677665 99999999984 555543 333348899999999999999999999999999987643
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEEEcC
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLP 502 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~ 502 (737)
..+.... +|...+.++++++..+++|+ |+.+++||... ...+..+.+|...+..+.|+|
T Consensus 180 -----------------~~~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 180 -----------------KRLRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp -----------------EEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -----------------cEEEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 2333222 79999999999999999999 99999999876 456678889999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCc----EEEEEcCCCcceEEEEEeCCCC-EEEE--EeCCCcEEEEeCCCCceeeceeee
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLN-VLVS--SGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~----~~~~l~~~~~~v~~l~~sp~g~-~l~s--~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
++ .+++++.|+.|++|+..+++ .+.....|...|.+++|+|++. .+++ |+.|++|++||+.++.. +.
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----~~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LS 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----EE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----ce
Confidence 99 99999999999999998765 3466778999999999999654 5554 45799999999998543 33
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEEE---ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~~---~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
.+. .+ ..+.++.|+|+++.++++ .|+.|+|||+.+++++.++.+ |...|++++|+|+|++|++|+.||+|
T Consensus 316 ~~~-~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 316 AVD-AH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp EEE-CS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred eec-cc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 222 22 579999999999998873 589999999999999999975 78999999999999999999999999
Q ss_pred EEEEcCCCeeEEEE
Q 004683 652 KVFDTSTLELRCQI 665 (737)
Q Consensus 652 ~vwd~~~~~~~~~~ 665 (737)
+|||+....+....
T Consensus 389 riWdv~~~~~~~~~ 402 (420)
T 4gga_A 389 RLWRCFELDPARRR 402 (420)
T ss_dssp EEECCSCSSCC---
T ss_pred EEEECCCCCccchh
Confidence 99999876554443
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-33 Score=299.19 Aligned_cols=280 Identities=10% Similarity=0.057 Sum_probs=230.5
Q ss_pred cccccCCCCCEEEEEecCCeEEEeecCccCCCCc--eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 343 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~--~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
..+.++|+|+++++++.|+.|++|++.. +. +.. .+.+ |...|.+++|+|+|++|++++.||+|++||+.+.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~----~~~~~~~-~~~~--h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVH-ELKE--HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEET----TEEEEEE-EEEC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC----CcEEeee-eecC--CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 3345899999999999999999999984 32 332 2555 8999999999999999999999999999997643
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcE---EEEe-cCCCC
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LATF-ANPPP 493 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~---~~~~-~~~~~ 493 (737)
. .........|...|.+++|+ ++++++++ ||.|++||+.++.. ...+ .+|..
T Consensus 85 ~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 85 T---------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp E---------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred e---------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 2 11111112588999999999 88999999 99999999988762 3333 57889
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEec------------------CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 554 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~------------------~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d 554 (737)
.|.+++|+|++ .+++|+.||.|++||+ .+++.+..+.+|...|.+++|+|+++++++++.|
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 99999999999 9999999999999995 4678889999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCC--Cce--e------------
Q 004683 555 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNH--T------------ 618 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~--~~~--~------------ 618 (737)
|.|++||+++++. +..+ ..|. ..|.+++|+|++.+++++.|+.|++|++.+ +.. +
T Consensus 224 ~~i~i~d~~~~~~-----~~~~-~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 224 STVCLADADKKMA-----VATL-ASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp TEEEEEEGGGTTE-----EEEE-ECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred CEEEEEECCCCce-----eEEE-ccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 9999999988543 3322 2444 689999999999999989999999999987 421 0
Q ss_pred ------------------------EEecCCCCCCCeEEEEEc-cCC---CEEEEEecCCeEEEEEcCCCe
Q 004683 619 ------------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 619 ------------------------~~~~~~~h~~~v~~~~~s-p~~---~~l~sgs~dg~I~vwd~~~~~ 660 (737)
..+. ..|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1121 2478999999976 677 999999999999999998754
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=310.96 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=236.2
Q ss_pred CCCeEEEEEecCCC-EEEEE----------ECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe
Q 004683 388 GGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 456 (737)
Q Consensus 388 ~~~V~~v~fspdg~-~L~s~----------s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V 456 (737)
...|.+++|+|+|+ +|++| +.|++|++|++.+... . ..... ..|...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----~-------------~~~~~---~~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----E-------------KPIAS---LQVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----C-------------SCSCC---CCCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----C-------------cEEEE---EecCCce
Confidence 45788999999997 99999 8899999999875321 0 01111 1488999
Q ss_pred EEEEEe--CCEEEEEe-CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCCc---
Q 004683 457 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--- 524 (737)
Q Consensus 457 ~~v~~s--~~~l~s~s-dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~--- 524 (737)
.+++|+ +++|++++ ||.|++||+.+ .+.+..+.+|...|.+++|+|+ + .+++|+.|+.|++||+.+++
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999 88999998 99999999987 4588888999999999999998 6 99999999999999999876
Q ss_pred ---EEE---EEcCCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-
Q 004683 525 ---TKA---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 596 (737)
Q Consensus 525 ---~~~---~l~~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g- 596 (737)
... .+.+|...|.+++|+|+ +.++++++.||.|++||+++++............+|. ..|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKNS 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSCT
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCCC
Confidence 332 23668999999999999 7899999999999999999854322211110011113 689999999997
Q ss_pred CEEEEE-ecC---cEEEEeCCCC-ceeEEecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecccc
Q 004683 597 IHLLSI-HEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 597 ~~l~~~-~dg---~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 670 (737)
.+++++ .|+ .|++||++++ .++..+.. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..|
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS--
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC--
Confidence 577774 777 9999999986 55555541 3688999999999 9999999999999999999999998888743
Q ss_pred cCCCCccCceeeEEEEEccCCC-CEEEEEECCCcEEEEecCCCce
Q 004683 671 AQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~-~~las~s~Dg~V~iWd~~~~~~ 714 (737)
...+. +++|+| ++ .+|++++.||.|++|++.+...
T Consensus 305 ------~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 305 ------GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ------SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ------CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 33455 899999 66 8999999999999999988753
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=332.51 Aligned_cols=175 Identities=12% Similarity=0.119 Sum_probs=150.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc----------------cccccceee----eeEEeecCCCeeeee
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEEENVNM----ESQLYQPSSKLVMTN 446 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~----------------~~g~~~~~~----~~~l~~~~~~~~~~~ 446 (737)
|.+.|.+++|+|+|++||+|+.||+|+||+...... + |..+.+. .+++||..++.++..
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 899999999999999999999999999999876443 2 3322222 469999999988776
Q ss_pred ccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEE-----------EEecCCCCCeEEEEEcCCC--eEEEEE
Q 004683 447 DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-----------ATFANPPPIATYFILLPQD--LFAFGF 510 (737)
Q Consensus 447 ~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~--~l~sgs 510 (737)
+. |...|++++|+ ++++++|+ ||+|++||+.+++.. ..+.+|.+.|.+++|+|++ .+++|+
T Consensus 95 ~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 95 VF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred Ec---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 64 66899999999 89999999 999999999988764 2235788999999999975 899999
Q ss_pred CCCeEEEEecCCCcEEEEEcCC------------------CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 004683 511 DDSSILVHCPCTKKTKAKLKGH------------------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 566 (737)
Q Consensus 511 ~dg~I~vwd~~~~~~~~~l~~~------------------~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~ 566 (737)
.||.| +||+++++++..+..| ...|.+++|+|+|++|++++.||.|++||+++++
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999 9999999999888765 4779999999999999999999999999997654
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=301.90 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=244.3
Q ss_pred CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeec
Q 004683 360 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 438 (737)
Q Consensus 360 dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~ 438 (737)
++.+++|++.. ...... +.+ |.+.|.+++|+| +|++|++|+.||+|++|++.+... ......
T Consensus 22 ~~~~~v~~~~~----~~~~~~-~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~----- 84 (408)
T 4a11_B 22 ESTRRVLGLEL----NKDRDV-ERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-----QSYYTC----- 84 (408)
T ss_dssp HHHHHHHTEEE----CTTEEE-CCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSS-----SSCEEE-----
T ss_pred cCcceeecccc----Ccceee-eec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcc-----cceEec-----
Confidence 45567888774 333333 555 999999999999 999999999999999999886433 111100
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC---CC-eEEEEE
Q 004683 439 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP---QD-LFAFGF 510 (737)
Q Consensus 439 ~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~-~l~sgs 510 (737)
............+|...|.+++|+ ++++++++ ||.|++||+.+++....+. +...+.++.++| ++ .+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 85 KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE
T ss_pred cccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc
Confidence 000000000112599999999998 56899999 9999999999999888876 667889999988 44 899999
Q ss_pred CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeece----------eeeecccC
Q 004683 511 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSK----------FLHSFQTG 579 (737)
Q Consensus 511 ~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~----------~~~~~~~~ 579 (737)
.|+.|++||+++++.+..+.+|...|.+++|+|+++ .+++++.||.|++||++++...... .......+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 999999999999999999999999999999999998 5899999999999999874311000 00001134
Q ss_pred CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 580 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 580 ~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h---~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
|. ..|.+++|+|+++++++ +.||.|++||+.+++.......... ...+........+..+++++.|+.|++||
T Consensus 244 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 244 HN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 44 78999999999999998 5899999999998877654433211 11222222234456677778899999999
Q ss_pred cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 656 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
+.+++.+..+..| ...+. +++|+| ++.+|++|+.||.|++|++.++++.-
T Consensus 321 ~~~~~~~~~~~~~--------~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 321 VYSGEQITMLKGH--------YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTTCCEEEEECCC--------SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC-----
T ss_pred CcCCcceeeeccC--------CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCccC
Confidence 9999999888643 33455 999999 89999999999999999999887543
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-32 Score=299.28 Aligned_cols=282 Identities=14% Similarity=0.150 Sum_probs=232.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
-.+..++||+++ .|++| .|++|+|||..+ |.+...+...+|...|++++|+ |++|
T Consensus 106 ~y~~~l~wS~~n-~lAvg-ld~tV~lWd~~t---------------------g~~~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVA-LDNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp TTCBCEEECTTS-EEEEE-ETTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred ccceeEEECCCC-EEEEE-eCCEEEEEECCC---------------------CCEEEEEEecCCCCcEEEEEECCCCCEE
Confidence 356789999865 56655 589999888664 3333333333688999999999 8999
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeC
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL 543 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp 543 (737)
++|+ ||+|++||+.+++.+..+.+|...+.++++ ++ .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 9999 999999999999999999999999998877 45 9999999999999998864 45678899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-E--ecCcEEEEeCCCCceeE
Q 004683 544 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-I--HEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 544 ~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~--~dg~I~iwd~~~~~~~~ 619 (737)
+++++++++.|+.|++||..+++... ..+. ....|. ..|.+++|+|.+. .+++ + .|+.|++||+.++.+..
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred CCCeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 99999999999999999998754322 1222 233444 7899999999875 4444 2 68999999999999988
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
.+.. ...+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+| ...|. +++|+| |+.+|||
T Consensus 316 ~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--------~~~V~--~l~~sp-dg~~l~S 381 (420)
T 4gga_A 316 AVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--------TSRVL--SLTMSP-DGATVAS 381 (420)
T ss_dssp EEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--------SSCEE--EEEECT-TSSCEEE
T ss_pred eecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--------CCCEE--EEEEcC-CCCEEEE
Confidence 8864 56799999999999988765 7899999999999999988643 34455 999999 8999999
Q ss_pred EECCCcEEEEecCCCce
Q 004683 698 GLTNGRVHVIEPLESEV 714 (737)
Q Consensus 698 ~s~Dg~V~iWd~~~~~~ 714 (737)
|+.||+|+|||+.+..+
T Consensus 382 ~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 382 AAADETLRLWRCFELDP 398 (420)
T ss_dssp EETTTEEEEECCSCSSC
T ss_pred EecCCeEEEEECCCCCc
Confidence 99999999999977543
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-32 Score=300.58 Aligned_cols=282 Identities=12% Similarity=0.157 Sum_probs=236.2
Q ss_pred ecCCCCCCCCe-EEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 381 LLPDNSFGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 381 ~l~~~~h~~~V-~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
.+.+ |...| .++.| ++++|++|+.||+|++||+.++ ..+..+. +|.+.|.++
T Consensus 116 ~l~~--h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---------------------~~~~~~~--~h~~~V~~l 168 (464)
T 3v7d_B 116 TLRG--HMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---------------------KFLLQLS--GHDGGVWAL 168 (464)
T ss_dssp EEEC--CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---------------------EEEEEEC--CCSSCEEEE
T ss_pred EEcC--CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---------------------cEEEEEe--CCCcCEEEE
Confidence 3666 87775 55555 6789999999999999987642 2222222 699999999
Q ss_pred EEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEc--CCC-eEEEEECCCeEEEEecCCCc----------
Q 004683 460 ALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKK---------- 524 (737)
Q Consensus 460 ~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s--~~~-~l~sgs~dg~I~vwd~~~~~---------- 524 (737)
+|+ +.++++|+ ||+|++||+.+++.+..+.+|...|.+++|+ +++ .+++|+.|+.|++||+.++.
T Consensus 169 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 169 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp EECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred EEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 999 66999999 9999999999999999999999999999998 577 99999999999999998765
Q ss_pred -------------EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEE
Q 004683 525 -------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 591 (737)
Q Consensus 525 -------------~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 591 (737)
.+..+.+|...+.++ +++++++++++.||.|++||+++++ .+. ...+|. ..|.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~ 317 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-----CLY-ILSGHT---DRIYSTI 317 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCEEEEE
Confidence 255678888888887 6778999999999999999999843 333 234555 7899999
Q ss_pred EecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccc
Q 004683 592 FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 592 ~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 670 (737)
|+|+++++++ +.||.|++||+++++++..+.+ |...|.+++|+ ++++++|+.||.|++||+.++........
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--- 390 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--- 390 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---
Confidence 9999999998 5899999999999999998865 68899999997 58999999999999999999876655531
Q ss_pred cCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeee
Q 004683 671 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~ 717 (737)
...+. .++|+| ++.++++|+ ||.|++||+.+++....
T Consensus 391 ------~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 391 ------TNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp ------TTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred ------CCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 33344 788999 789999998 89999999999987654
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-33 Score=297.80 Aligned_cols=277 Identities=11% Similarity=0.096 Sum_probs=220.8
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC----CCEEEEEECCCcEEEeeccCCcccccc
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd----g~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
...+++++.++.|++|++..............+ .|...|.+++|+|+ |++|++|+.||+|++||+.+.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------ 105 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA--DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------ 105 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECS--CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeecccc--CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------
Confidence 455677777889999999853211222222222 27789999999999 679999999999999987642
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEe---cCCCCCeEEEE
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF---ANPPPIATYFI 499 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~ 499 (737)
..+..+. +|...|.+++|+ +++|++++ ||.|++||+.+++.+..+ .+|...|.+++
T Consensus 106 ---------------~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 106 ---------------QCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ---------------CEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ---------------eEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 2222222 699999999998 68999999 999999999999999988 68999999999
Q ss_pred EcCCC-eEEEEECCCeEEEEecCCCcEEEEE----------------------------cCCCcceEEEEEeCCCCEEEE
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----------------------------KGHQNRITCLAYSLSLNVLVS 550 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l----------------------------~~~~~~v~~l~~sp~g~~l~s 550 (737)
|+|++ .+++|+.||.|++||+++++....+ .+|...|.+++|+ ++++++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 246 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS 246 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence 99999 9999999999999999977544333 3389999999999 779999
Q ss_pred EeCCCcEEEEeCCCCceee---------ceeeeecccCCCCCCCCeEEEEEecC--CCEEEEE-ecCcEEEEeCCCCcee
Q 004683 551 SGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQIDVYEAPTLNHT 618 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~~~~~---------~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~-~dg~I~iwd~~~~~~~ 618 (737)
++.|+.|++||+.+..... ...+. ...+|. ..|.+++|+|+ +++|+++ .||.|++||+.++++.
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 9999999999998753210 01122 233444 68999999999 9999985 8899999999987643
Q ss_pred ----EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 619 ----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 619 ----~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
..+..+.|...|++++|+|++++|++++.||.|++||+.+
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3666544579999999999999999999999999999863
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-32 Score=285.28 Aligned_cols=249 Identities=13% Similarity=0.163 Sum_probs=203.3
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++||+|+.|++|+||++.... +.++..+. +|.++|.+++|
T Consensus 5 ~~~--h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------~~~~~~l~--gH~~~V~~v~~ 61 (297)
T 2pm7_B 5 ANA--HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------HKLIDTLT--GHEGPVWRVDW 61 (297)
T ss_dssp CCS--CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------BCCCEEEC--CCSSCEEEEEE
T ss_pred ccC--CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------cEEEEEEc--cccCCeEEEEe
Confidence 455 99999999999999999999999999999976321 11112222 79999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCCCc--EEEEE
Q 004683 462 R----GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKL 529 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~~~--~~~~l 529 (737)
+ +++|++|+ ||+|++||+.+++ .+..+.+|...|.+++|+|+ + .|++|+.|+.|++||++++. ....+
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee
Confidence 6 68999999 9999999998874 56677889999999999998 7 99999999999999998763 24567
Q ss_pred cCCCcceEEEEEeCC-------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC
Q 004683 530 KGHQNRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~-------------g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g 596 (737)
.+|...|.+++|+|+ +++|++|+.|++|++||++++.... .... ...+|. ..|.+++|+|++
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~ 216 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTV 216 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCC
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCC
Confidence 889999999999997 5799999999999999998743211 1222 345676 799999999995
Q ss_pred ---CEEEE-EecCcEEEEeCCCCc---eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 597 ---IHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 597 ---~~l~~-~~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.+|++ +.|++|++||+++.. ....+....|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 78887 589999999997643 122332234678999999999999999999999999999863
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-32 Score=325.68 Aligned_cols=287 Identities=16% Similarity=0.263 Sum_probs=245.7
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++|++|+.||+|+|||+.++ ..+..+. +|...|.+++|
T Consensus 9 ~~~--h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---------------------~~~~~~~--~~~~~v~~~~~ 63 (814)
T 3mkq_A 9 FSN--RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---------------------VEVRSIQ--VTETPVRAGKF 63 (814)
T ss_dssp EEE--ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------------------EEEEEEE--CCSSCEEEEEE
T ss_pred eec--CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---------------------ceEEEEe--cCCCcEEEEEE
Confidence 555 8999999999999999999999999999987632 2222222 69999999999
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcce
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 536 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v 536 (737)
+ +++|++++ ||.|++||+.+++.+..+.+|...|++++|+|++ .|++|+.||.|++||+.++ .....+.+|...|
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 9 89999999 8999999999999999999999999999999999 9999999999999999987 6778888999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec--CCCEEEEE-ecCcEEEEeC
Q 004683 537 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEA 612 (737)
Q Consensus 537 ~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~-~dg~I~iwd~ 612 (737)
.+++|+| ++..+++++.||.|++||+.++. ....+..++. ..+.+++|+| ++.+++++ .||.|++||+
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCT---TCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCC---CCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999 88999999999999999998743 2232334443 6799999999 89999985 8899999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
.+++++..+.. |...|.+++|+|+++++++++.||.|++||+.+++....+..+ ...+. +++|+| ++
T Consensus 216 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--------~~~v~--~~~~~~-~~ 282 (814)
T 3mkq_A 216 QTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHP-TG 282 (814)
T ss_dssp TTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--------SSSEE--EEEECT-TC
T ss_pred CCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--------CCcEE--EEEEcc-CC
Confidence 99999888865 6889999999999999999999999999999999988887643 33444 999999 55
Q ss_pred C--EEEEEECCCcEEEEecCCCcee
Q 004683 693 N--RIALGLTNGRVHVIEPLESEVE 715 (737)
Q Consensus 693 ~--~las~s~Dg~V~iWd~~~~~~~ 715 (737)
. +++++ .|+.+.+|++..+.+.
T Consensus 283 ~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 283 RKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp GGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred CceEEEEE-eCCCEEEEEcCCCCce
Confidence 5 35555 5677999998765433
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=281.24 Aligned_cols=279 Identities=14% Similarity=0.165 Sum_probs=227.6
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEE
Q 004683 391 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 468 (737)
Q Consensus 391 V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s 468 (737)
..+|+||+++ .||+| .|++|+|||+.+ ++++..+...+|...|.+++|+ ++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~t---------------------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCC---------------------CCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 5789999987 55554 599999888663 3333333333688999999999 899999
Q ss_pred Ee-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEEeCCC
Q 004683 469 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL 545 (737)
Q Consensus 469 ~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~sp~g 545 (737)
|+ ||+|++||+.+++.+..+.+|...+.++.+ ++ .+++|+.++.+++|+..++ ..+..+.+|...+.++.+++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99 999999999999999999999988876554 56 8999999999999998765 4567788999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-E--E-ecCcEEEEeCCCCceeEEe
Q 004683 546 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S--I-HEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 546 ~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~--~-~dg~I~iwd~~~~~~~~~~ 621 (737)
+++++++.||.|++||+++++....... ....+. ..|.+++++|++..++ + + .++.|++||..........
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQ--TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSE--EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CEEEEEecCcceeEEECCCCccccccee--eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999988543222111 122333 6899999999875444 2 2 6789999999988877665
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
. +...+..++|+|++..+++++ .|+.|++||+.+++++..+.+| ...|+ +++|+| ++.+||||+
T Consensus 238 ~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--------~~~V~--~l~~sp-dg~~l~S~s 303 (318)
T 4ggc_A 238 D---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--------TSRVL--SLTMSP-DGATVASAA 303 (318)
T ss_dssp E---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--------SSCEE--EEEECT-TSSCEEEEE
T ss_pred c---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--------CCCEE--EEEEcC-CCCEEEEEe
Confidence 4 467899999999999887654 7999999999999999988643 44455 999999 899999999
Q ss_pred CCCcEEEEecCCCc
Q 004683 700 TNGRVHVIEPLESE 713 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~ 713 (737)
.||+|+|||+.+.+
T Consensus 304 ~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 304 ADETLRLWRCFELD 317 (318)
T ss_dssp TTTEEEEECCSCCC
T ss_pred cCCeEEEEECCCCC
Confidence 99999999997654
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=281.87 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=224.6
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
+.||+++ .||+| .|++|+|||+.+ +.+... +..++|...|.+++|+|+|++|++|+.||+|++|++.++
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~t----g~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---- 99 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---- 99 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCC----CCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----
Confidence 4489886 66665 599999999984 555543 444448999999999999999999999999999987643
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCC-cEEEEecCCCCCeEEEEEcC
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 502 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~ 502 (737)
+++.... +|...+.++.+.+..+++++ ++.+++|+..++ ..+..+.+|...+.++.+++
T Consensus 100 -----------------~~~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 100 -----------------KRLRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp -----------------EEEEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -----------------eeEEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 2222222 68888988887799999999 899999998775 55677889999999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcE----EEEEcCCCcceEEEEEeCCCCEE---EEEeCCCcEEEEeCCCCceeeceeee
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL---VSSGADAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~----~~~l~~~~~~v~~l~~sp~g~~l---~s~s~dg~I~lwdl~~~~~~~~~~~~ 574 (737)
++ .+++++.|+.|++||+++++. ......+.+.|.+++++|++..+ ++++.++.|++||...... ..
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LS 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cc
Confidence 99 999999999999999987653 34556688899999999976533 4567789999999988432 22
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE-E--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~-~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
... +. ..+..+.|+|++..+++ + .|+.|++||+++++++.++.+ |...|++++|+|+|++|++|+.||+|
T Consensus 236 -~~~-~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 236 -AVD-AH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp -EEE-CS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -ccc-ce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 111 22 67999999999998876 3 689999999999999999975 78999999999999999999999999
Q ss_pred EEEEcCCCe
Q 004683 652 KVFDTSTLE 660 (737)
Q Consensus 652 ~vwd~~~~~ 660 (737)
+|||+....
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999997653
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-32 Score=296.28 Aligned_cols=283 Identities=12% Similarity=0.146 Sum_probs=228.9
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCC--CceeeeecCCCCCCCCeEEEEEecC----C---CEEEEEECCCcEEEeec
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDNSFGGRVVRLIYSHS----G---DFLVALTQTATHKLWKW 417 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~--~~~~~~~l~~~~h~~~V~~v~fspd----g---~~L~s~s~dg~i~iWd~ 417 (737)
++| +++++++.||+|++|++...... ..+.. .+.+ |...|.+++|+|+ | ++|++++.||.|++|++
T Consensus 24 ~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~--h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~ 98 (397)
T 1sq9_A 24 ACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY-SHFV--HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 98 (397)
T ss_dssp ECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE-EEEC--CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred ecC--CeEEEEcCCCEEEEEECCCcccccCCCcce-EEec--CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence 455 78999999999999999853100 01222 2445 8999999999999 9 99999999999999998
Q ss_pred cCCcccccccceeeeeEEeecCCCeeeeeccCCCC-----CCCeEEEEEe------CCE-EEEEe-CCeEEEEECCC---
Q 004683 418 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-GGKISIFSLET--- 481 (737)
Q Consensus 418 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h-----~~~V~~v~~s------~~~-l~s~s-dg~i~vwd~~~--- 481 (737)
.+... .. ......+. .| ...|.+++|+ +++ |++++ ||.|++||+.+
T Consensus 99 ~~~~~-----~~-----------~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 99 TREDE-----TK-----------KVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EECTT-----TC-----------CEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCCcc-----cc-----------cccceeec--ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 74321 00 00011111 45 5899999997 778 99998 99999999988
Q ss_pred ---CcEEE-----Ee-------cCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcC---C---CcceEEEE
Q 004683 482 ---FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---H---QNRITCLA 540 (737)
Q Consensus 482 ---~~~~~-----~~-------~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~---~---~~~v~~l~ 540 (737)
++.+. .+ ..|...|.+++|+|++.+++|+.|+.|++||+++++.+..+.. | ...|.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 66665 66 4588899999999988888999999999999999999999998 8 99999999
Q ss_pred EeCCCCEEEEEeCC---CcEEEEeCCCCceeeceeeeecccC------------CCCCCCCeEEEEEecCCCEEEE-Eec
Q 004683 541 YSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG------------LVPETTIVNHIQFHPDQIHLLS-IHE 604 (737)
Q Consensus 541 ~sp~g~~l~s~s~d---g~I~lwdl~~~~~~~~~~~~~~~~~------------~~~~~~~v~~l~~sp~g~~l~~-~~d 604 (737)
|+|+++++++++.| |.|++||+++++. +..+... |. ..|.+++|+|++++|++ +.|
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGER-----IGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCE-----EEEECBC--------CCBSBS---SCEEEEEECSSSSEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcc-----cceeccCcccccccccccccC---CcEEEEEECCCCCEEEEEeCC
Confidence 99999999999999 9999999998543 3322220 44 78999999999999998 589
Q ss_pred CcEEEEeCCCCceeEEecCC----CC---------------CCCeEEEEEccCC----------CEEEEEecCCeEEEEE
Q 004683 605 GQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG----------KCIYVSCKSGHVKVFD 655 (737)
Q Consensus 605 g~I~iwd~~~~~~~~~~~~~----~h---------------~~~v~~~~~sp~~----------~~l~sgs~dg~I~vwd 655 (737)
|.|++||+++++++..+... .| ...|++++|+|++ ++|++|+.||.|++|+
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 99999999999999888711 24 7899999999998 7999999999999999
Q ss_pred cCCCe
Q 004683 656 TSTLE 660 (737)
Q Consensus 656 ~~~~~ 660 (737)
+.+|+
T Consensus 393 ~~~g~ 397 (397)
T 1sq9_A 393 EAGGK 397 (397)
T ss_dssp EEC--
T ss_pred cCCCC
Confidence 98864
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=303.01 Aligned_cols=311 Identities=13% Similarity=0.101 Sum_probs=234.7
Q ss_pred CCCcceeec-cCCCC-CcceeeeCCCCccccccCC-CCCEEEEEecCCeEEEeecCccCCCCcee-eeecCCCCCCCCeE
Q 004683 317 QEGRPLDAS-SGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVV 392 (737)
Q Consensus 317 ~~~~~l~~~-~gh~~-~~s~l~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iW~~~~~~~~~~~~-~~~l~~~~h~~~V~ 392 (737)
..+..+.++ .+|.. +.+ +.++| +|+++++|+.||+|++||+.......... ...+ + |...|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~-----------~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~--h~~~v~ 115 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITS-----------SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D--CSSTVT 115 (437)
T ss_dssp CCCCEEEEECTTTTSCEEE-----------EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E--CSSCEE
T ss_pred ccceEEeeeccCCCCceEE-----------EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-c--CCCCEE
Confidence 345555555 55544 333 33778 99999999999999999987521111111 1111 2 899999
Q ss_pred EEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCC--CCCCCeEEEEEe----CCEE
Q 004683 393 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR----GSHL 466 (737)
Q Consensus 393 ~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~h~~~V~~v~~s----~~~l 466 (737)
+++|+|++++|++|+.||+|++||+.... .|....... +..+...... ++...+.++.+. +.++
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQ--QESEVKFLN--------CECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEE--ETTEEEEEE--------EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEecccc--CCceeeccc--------cceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 99999999999999999999999985210 111111110 0011111111 266788888854 7789
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecC--CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc-CCCcceEEEEE
Q 004683 467 FSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAY 541 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~-~~~~~v~~l~~ 541 (737)
++|+ ||.|++||+.+++.+..+.+ |...|++++|+|++ .|++|+.||.|++||+++++++..+. .|...|.+++|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 9999 99999999999999999987 88999999999999 99999999999999999999999886 78889999966
Q ss_pred eC----CCCEEEEEeCCCcEEEEeCCCCceeeceeee-------ec-----------ccC--CCCCCCCeEEEEEecCCC
Q 004683 542 SL----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-------SF-----------QTG--LVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 542 sp----~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~-------~~-----------~~~--~~~~~~~v~~l~~sp~g~ 597 (737)
+| ++.++++++.||.|++||+++++......-. .+ ..+ |. ..|.+++|+ +++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~ 341 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDK 341 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-Cce
Confidence 54 6789999999999999999986543221100 00 011 33 679999999 778
Q ss_pred EEEEE-ecCcEEEEeCCCCceeEEecCC-----------------------------------CCCCCeEEEEEccC--C
Q 004683 598 HLLSI-HEGQIDVYEAPTLNHTSQLVPD-----------------------------------KMDLPITYATYSCD--G 639 (737)
Q Consensus 598 ~l~~~-~dg~I~iwd~~~~~~~~~~~~~-----------------------------------~h~~~v~~~~~sp~--~ 639 (737)
+|+++ .|+.|++||+.+++....+.++ .|...|++++|+++ +
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~ 421 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET 421 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence 88885 8999999999998887776642 17889999999988 7
Q ss_pred CEEEEEecCCeEEEEE
Q 004683 640 KCIYVSCKSGHVKVFD 655 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd 655 (737)
.+|++|+.||.|+||+
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 8999999999999995
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=302.31 Aligned_cols=306 Identities=10% Similarity=0.085 Sum_probs=223.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCC------------C
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK------------D 454 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~------------~ 454 (737)
|.+.|.+++|+|+|++||+|+.||.|+||++.+...........+ .+...+. +|. .
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~----------~~~~~~~--~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY----------NVYSTFQ--SHEPEFDYLKSLEIEE 94 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCE----------EEEEEEE--CCCCEEEGGGTEEECC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccce----------eEecccc--cccccccccccccccC
Confidence 678999999999999999999999999999885432000000000 0111111 576 8
Q ss_pred CeEEEEEe--C--CEEEEEe-CCeEEEEECCCCcEE---------------------------------------EE-ec
Q 004683 455 SISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT-FA 489 (737)
Q Consensus 455 ~V~~v~~s--~--~~l~s~s-dg~i~vwd~~~~~~~---------------------------------------~~-~~ 489 (737)
.|.+++|+ + ..+++++ ||+|++||+.++... +. ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999 4 6899999 999999999764432 13 35
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC-CcEEEE-------EcCCCcceEEEEEeCCC-CEEEEEeCCCcEEE
Q 004683 490 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAK-------LKGHQNRITCLAYSLSL-NVLVSSGADAQLCV 559 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~-~~~~~~-------l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~l 559 (737)
+|...|.+++|+|++ .|++| .|+.|++||+++ ++.... +.+|...|.+++|+|++ +++++++.||.|++
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 899999999999999 99998 799999999984 444442 55799999999999998 99999999999999
Q ss_pred EeCCCCceeeceeeeecccCCCC---------CCCCeEEEEEecCCCEEEEEecCcEEEEeCCC-CceeEEecCCCCCC-
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMDL- 628 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~-~~~~~~~~~~~h~~- 628 (737)
||++++..... .+. ...+|.. +...|.+++|+|+|++|+++.++.|++||+++ ++++..+..+....
T Consensus 254 wd~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 254 CDMRASALCDR-HSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EETTTCSSSCT-TCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EECcCCccccc-eee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccc
Confidence 99998542110 022 2223320 00289999999999999996559999999997 88887776532100
Q ss_pred ------------CeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc-------------CCC---------
Q 004683 629 ------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------QPG--------- 674 (737)
Q Consensus 629 ------------~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-------------~~g--------- 674 (737)
.+..++|+|++++|++|+.||.|++||+.+++.+.. ..+... ..+
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccccccc
Confidence 134599999999999999999999999999987632 211100 000
Q ss_pred -CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 675 -TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 675 -~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
..+....+.+++||| ++.+||+++.++ +++|...
T Consensus 411 ~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred cccccCCceeEEEECC-CCCEEEEEecce-eeeeccc
Confidence 001111245899999 899999998775 8888643
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=291.78 Aligned_cols=283 Identities=12% Similarity=0.128 Sum_probs=221.5
Q ss_pred ccccCCCCCEEE-EEec---CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC---CCEEEEEECCCcEEEee
Q 004683 344 ESTSLPDADSAV-CAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWK 416 (737)
Q Consensus 344 ~~~~spdg~~la-~~s~---dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd---g~~L~s~s~dg~i~iWd 416 (737)
.+.|+|+|..++ +++. |+.|++|++.. +.+......+ |...|.+++|+|+ |.+|++|+.||.|++||
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 344889986555 5555 89999999985 4443322223 8999999999999 79999999999999999
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE------e--CCEEEEEe-CCeEEEEECCCCc-EEE
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TLA 486 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~------s--~~~l~s~s-dg~i~vwd~~~~~-~~~ 486 (737)
+.+... .+..+. +|...|.+++| + +++|++++ ||.|++||+.+++ .+.
T Consensus 97 ~~~~~~--------------------~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 97 LEAPEM--------------------PVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TTSCSS--------------------CSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCc--------------------cEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 875321 111111 69999999965 4 77999999 9999999999887 777
Q ss_pred EecCCCC----CeEEEE----EcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeC---CCCEEEEEeCC
Q 004683 487 TFANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGAD 554 (737)
Q Consensus 487 ~~~~~~~----~v~~~~----~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp---~g~~l~s~s~d 554 (737)
.+..|.+ .+.+++ |+|++ .+++|+.||.|++||+++++.... ..|...|.+++|+| ++.++++++.|
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 7766554 788888 67899 999999999999999999887554 55889999999999 99999999999
Q ss_pred CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCcEEEEeCCCCc----------------
Q 004683 555 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN---------------- 616 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~I~iwd~~~~~---------------- 616 (737)
|.|++||++++......... ...+|. ..|.+++|+|++. ++++ +.||.|++||++++.
T Consensus 234 g~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp TEEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred CeEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 99999999874332221111 122555 7999999999998 6777 589999999997543
Q ss_pred ---eeEEecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEEcCCCee
Q 004683 617 ---HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 617 ---~~~~~~~~~h~~~v~~~~~sp~~~~l~-sgs~dg~I~vwd~~~~~~ 661 (737)
.+..+.. |...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 310 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 310 SVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 4445544 688999999999999998 899999999999987654
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-32 Score=293.37 Aligned_cols=289 Identities=11% Similarity=0.067 Sum_probs=213.5
Q ss_pred cccCCCCCEEEEEecCC-------eEEEeecCccCCCC-----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----
Q 004683 345 STSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---- 408 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg-------~v~iW~~~~~~~~~-----~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~---- 408 (737)
+.|+|||+.||+|+.+. .|++|++....... ......+.+ |.+.|.+++++ ++.+++|+.
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~--~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED--NDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT--TSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC--CCCceEEEEeC--CCEEEEEECCCcc
Confidence 44899999999998643 59999987532111 112234565 88888888764 556777654
Q ss_pred -------CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCeEEE
Q 004683 409 -------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISI 476 (737)
Q Consensus 409 -------dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~i~v 476 (737)
|+++++|++..... .. ..+. .........+...+.+++|+ |+++++++ |++|++
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~-----~~----~~~~-----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVND-----QL----EFLT-----SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTT-----EE----EEEE-----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEecCCCcEEEEEecCCCc-----eE----EEee-----eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 45566666543211 00 0000 00111112466779999999 88876544 799999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE--EcCCCcceEEEEEeCCCCEEEEEeC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGA 553 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~--l~~~~~~v~~l~~sp~g~~l~s~s~ 553 (737)
||+.+++.+..+. |...|.+++|+|+| ++++++. +.+.+|+..++..+.. ..+|...|.+++|+|+++.+++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999988885 66789999999999 8888885 4566777677766543 4568889999999999999999998
Q ss_pred CC----cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCC
Q 004683 554 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 628 (737)
Q Consensus 554 dg----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~ 628 (737)
|+ .+++||+......... .. ...+|. ..|++++|+|+|++|++ +.|++|+|||+++++++.++.. .|..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~ 313 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLR-SK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF 313 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEE-EE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred CCcceeEEeecccccceeccee-ee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence 87 5888998764322211 12 233455 68999999999999998 5899999999999999988743 4799
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 629 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
.|++++|||||++|++||.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999654
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.9e-32 Score=280.30 Aligned_cols=250 Identities=11% Similarity=0.070 Sum_probs=204.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCC--CcEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~ 522 (737)
+|...|.+++|+ |++|++|+ |++|++||+.+ ++.+..+.+|...|.+++|+++ + .|++|+.|++|++||+++
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 799999999999 99999999 99999999974 4678899999999999999864 7 999999999999999998
Q ss_pred Cc--EEEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC---
Q 004683 523 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 595 (737)
Q Consensus 523 ~~--~~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--- 595 (737)
++ .+..+.+|...|.+++|+|+ |.++++++.|+.|++||++++.... .. ...+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~-~~~~h~---~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 159 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---ee-eeeccc---CccceEeecCCccc
Confidence 74 56678889999999999997 8999999999999999998742111 11 234565 78999999997
Q ss_pred ----------CCEEEE-EecCcEEEEeCCCCc----eeEEecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEEcC
Q 004683 596 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 596 ----------g~~l~~-~~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~sp~~---~~l~sgs~dg~I~vwd~~ 657 (737)
+++|++ +.|+.|++||++++. ....+.+ |...|.+++|+|++ .+|++|+.|++|++||+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 468888 589999999998765 4455644 78999999999984 899999999999999998
Q ss_pred CCee--EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 658 TLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 658 ~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
++.. ...... ..+| ...++ +++|+| ++.+||+++.||+|+||+.... ..|..
T Consensus 238 ~~~~~~~~~~~~----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~~ 291 (297)
T 2pm7_B 238 NEQGPWKKTLLK----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWEP 291 (297)
T ss_dssp STTSCCEEEESS----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEEE
T ss_pred CCCCccceeeee----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEEe
Confidence 7531 111110 0122 33344 999999 8999999999999999998643 34543
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-33 Score=299.91 Aligned_cols=283 Identities=12% Similarity=0.031 Sum_probs=215.3
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCC-ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~-~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
...+.++|||+++++++.|+.|++|++... . .+.. .+.+ |...|.+++|+|+|++|++++.|++|++||+.+.
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~~-~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHAR-TFSD--HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETT---EEEECC-CBCC--CSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCC---ceEEEE-EEec--CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 344559999999999999999999999841 1 3333 2666 9999999999999999999999999999998753
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc---EEEEecC-CCC
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPP 493 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~---~~~~~~~-~~~ 493 (737)
.. -..... ..+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+.+ |..
T Consensus 88 ~~------------------~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 88 GT------------------WKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp -C------------------CCCEEE--CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred Cc------------------eeeeeE--ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 20 001111 11699999999999 88999999 9999999999877 4677777 999
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecC------------------CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 554 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~------------------~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d 554 (737)
.|.+++|+|++ .|++|+.|+.|++||+. .++++..+ +|...|.+++|+|+++++++++.|
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 99999999999 99999999999999985 34566667 899999999999999999999999
Q ss_pred CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc--ee--------------
Q 004683 555 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN--HT-------------- 618 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~--~~-------------- 618 (737)
|.|++||+.++.... ..+. ...+|. ..|.+++|+|+|++|+++.++.+.+|+..... ..
T Consensus 227 ~~i~iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTH 301 (377)
T ss_dssp TEEC-CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSS
T ss_pred CcEEEEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccc
Confidence 999999999854311 1123 233455 68999999999999999877777788875221 00
Q ss_pred --------------------EEec--------------CCCCCCCeEEEEEccC-CC---EEEEEecCCeEEEEEc
Q 004683 619 --------------------SQLV--------------PDKMDLPITYATYSCD-GK---CIYVSCKSGHVKVFDT 656 (737)
Q Consensus 619 --------------------~~~~--------------~~~h~~~v~~~~~sp~-~~---~l~sgs~dg~I~vwd~ 656 (737)
..+. ...|...|+++++.+. +. .+++|+.||.|++||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 302 TGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 0127889999997653 33 6999999999999985
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.3e-32 Score=285.58 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=228.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.+.|.+++|+|+|++|++++.||.|++|++..... . ....... +|...|.+++|+ ++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~-------------~~~~~~~--~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----N-------------VDLLQSL--RYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----E-------------EEEEEEE--ECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----c-------------ccceeee--ecCCceEEEEECCCCC
Confidence 999999999999999999999999999999874321 0 0001111 589999999999 88
Q ss_pred -EEEEEe-CCeEEEEEC-CCCcEEEEecC--CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC---------CcEEEEE
Q 004683 465 -HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKL 529 (737)
Q Consensus 465 -~l~s~s-dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~---------~~~~~~l 529 (737)
++++|+ ||.|++||+ .+++. ..+.+ |...|.+++|+| + .+++++.|+.|++||+++ ++++..+
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred cEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE
Confidence 899999 999999999 87755 67778 999999999999 8 999999999999999987 6666666
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEEec-CCCEEEE-EecCc
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQ 606 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~-~~dg~ 606 (737)
. |...|.+++|+|++ +++++.|+.|++||+++ +... .......+. ..+.+++|+| +++++++ +.||.
T Consensus 148 ~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp S-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETTSE
T ss_pred e-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecCCc
Confidence 6 88999999999987 99999999999999987 4321 111223344 6899999999 9999998 58999
Q ss_pred EEEEeCCCC------ceeEEecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCC
Q 004683 607 IDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 607 I~iwd~~~~------~~~~~~~~~~-------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
|++|+++.. +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------- 290 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------- 290 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-------
Confidence 999999876 6777776532 24499999999999999999999999999999999888765
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCc-EEEEe
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 708 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~-V~iWd 708 (737)
+|+...+. +++ | ++.+|++|+.||+ .+.|.
T Consensus 291 ~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 33234454 777 8 8999999999998 55555
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.4e-31 Score=288.50 Aligned_cols=283 Identities=18% Similarity=0.220 Sum_probs=235.9
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.. +++++|++|++|+.||+|++||+.++ ..+..+. +|...|.+++|
T Consensus 114 l~~--h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~---------------------~~~~~~~--~h~~~v~~~~~ 167 (445)
T 2ovr_B 114 LKG--HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---------------------KCLRTLV--GHTGGVWSSQM 167 (445)
T ss_dssp EEC--STTSCEE-EEEEETTEEEEEETTSCEEEEETTTC---------------------CEEEECC--CCSSCEEEEEE
T ss_pred ecc--cCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCC---------------------cEEEEEc--CCCCCEEEEEe
Confidence 555 8877644 35667999999999999999987643 2222222 69999999999
Q ss_pred eCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 462 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 462 s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
+++++++|+ ||+|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.+..+.+|...|.+++
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 246 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEE
Confidence 988999999 999999999999999999999999999999522 899999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeE
Q 004683 541 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 541 ~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~ 619 (737)
| +++.+++++.||.|++||+++++ .+..+ .+|. ..|.+++| ++.++++ +.|+.|++||+++++++.
T Consensus 247 ~--~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~-~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 247 Y--DGRRVVSGAYDFMVKVWDPETET-----CLHTL-QGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp E--CSSCEEEEETTSCEEEEEGGGTE-----EEEEE-CCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred E--CCCEEEEEcCCCEEEEEECCCCc-----EeEEe-cCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 9 78899999999999999998843 33322 3555 68999999 7888888 589999999999999998
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+.. |...+.++.+ +++++++|+.||.|++||+.+++.+..+..+. + +...+ .+++|++ .+|++|+
T Consensus 314 ~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~-~~~~v--~~~~~~~---~~l~s~~ 379 (445)
T 2ovr_B 314 TLTG--HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----K-HQSAV--TCLQFNK---NFVITSS 379 (445)
T ss_dssp EECC--CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT----S-CSSCE--EEEEECS---SEEEEEE
T ss_pred EEcC--CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC----C-CCCCE--EEEEECC---CEEEEEe
Confidence 8865 6778887776 46799999999999999999999888876421 1 13334 4888864 7999999
Q ss_pred CCCcEEEEecCCCceeeee
Q 004683 700 TNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~~~w~~ 718 (737)
.||.|++||+.+++.....
T Consensus 380 ~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp TTSEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCceeeee
Confidence 9999999999998765544
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-31 Score=294.51 Aligned_cols=278 Identities=15% Similarity=0.183 Sum_probs=224.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 466 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 466 (737)
|...|.+++| +|++|++|+.||+|++||+.++ .....+. +|...|.+++|.++++
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---------------------~~~~~~~--~h~~~v~~l~~~~~~l 186 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---------------------ECKRILT--GHTGSVLCLQYDERVI 186 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---------------------CEEEEEC--CCSSCEEEEECCSSEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---------------------eEEEEEc--CCCCcEEEEEECCCEE
Confidence 6788998887 8999999999999999987642 2222222 6999999999999999
Q ss_pred EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEE---EEEcCCCcceEEEEEe
Q 004683 467 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS 542 (737)
Q Consensus 467 ~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~---~~l~~~~~~v~~l~~s 542 (737)
++|+ ||+|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999 999999999999999999999999999999632 9999999999999999987655 677889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEe
Q 004683 543 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 621 (737)
Q Consensus 543 p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~ 621 (737)
+++++++|+.||.|++||+++++. +.. ..+|. ..|.+++++ +.++++ +.||.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~-----~~~-~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEF-----VRT-LNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCE-----EEE-EECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcE-----EEE-EcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 688999999999999999998533 332 23455 689999884 578887 58999999999999999988
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe---------eEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 622 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 622 ~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~---------~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
.+ |...|.+++| ++.+|++|+.||.|++||+.++. .+..+..| ...+. +++| ++
T Consensus 333 ~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--------~~~v~--~l~~---~~ 395 (435)
T 1p22_A 333 EG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--------SGRVF--RLQF---DE 395 (435)
T ss_dssp CC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--------SSCCC--CEEE---CS
T ss_pred eC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--------CCCeE--EEEe---CC
Confidence 65 6889999998 78999999999999999997765 56665432 34455 7888 45
Q ss_pred CEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 693 NRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
.+|++|+.||+|++||+.++......++
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SCEEECCSSSEEEEEC------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence 7899999999999999988765544443
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.8e-32 Score=283.44 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~ 522 (737)
+|.+.|.+++|+ |++|++|+ |++|++||+.++. .+..+.+|...|.+++|+|+ + .|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 699999999999 99999999 9999999998774 46778899999999999863 7 999999999999999998
Q ss_pred C--cEEEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC---
Q 004683 523 K--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 595 (737)
Q Consensus 523 ~--~~~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--- 595 (737)
+ .....+.+|...|.+++|+|+ +.++++++.|+.|++||++.... ........+|. ..|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 7 466778899999999999998 78999999999999999987421 11122345666 68999999997
Q ss_pred --------------CCEEEE-EecCcEEEEeCCCC---ceeEEecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEE
Q 004683 596 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 653 (737)
Q Consensus 596 --------------g~~l~~-~~dg~I~iwd~~~~---~~~~~~~~~~h~~~v~~~~~sp~~----~~l~sgs~dg~I~v 653 (737)
+++|++ +.|+.|++||++.. +++..+. .|...|.+++|+|++ ++|++|+.||+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 367787 58999999999755 3455554 478999999999986 89999999999999
Q ss_pred EEcCCCe----eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 654 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 654 wd~~~~~----~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
|++.+.. ....+.. | ...++ +++|+| ++.+||+|+.||+|+||+..... .|..
T Consensus 243 w~~~~~~~~~~~~~~~~~-------~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~g-~~~~ 299 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHK-------F-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVDG-QWVC 299 (316)
T ss_dssp EECSSTTCCCCBCCEEEE-------C-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTTS-CEEE
T ss_pred EEccCccccchhhhhhhc-------C-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCCC-cEEE
Confidence 9998631 1112221 1 33455 999999 89999999999999999986432 3443
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.1e-32 Score=283.31 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=196.6
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|++++|+|+|++|++|+.|++|+|||+.++.. .++..+. +|...|.+++|
T Consensus 9 ~~~--H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------~~~~~l~--gH~~~V~~v~~ 65 (316)
T 3bg1_A 9 DTS--HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------ILIADLR--GHEGPVWQVAW 65 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------EEEEEEE--CCSSCEEEEEE
T ss_pred ccc--ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------EEEEEEc--CCCccEEEEEe
Confidence 555 999999999999999999999999999999764211 0111122 79999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCCC--cEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCCCcE---EEE
Q 004683 462 R----GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAK 528 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~~~~---~~~ 528 (737)
+ +++|++|+ |++|++||+.++ .....+.+|...|.+++|+|+ + .|++|+.|+.|++||++++.. ...
T Consensus 66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp CCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee
Confidence 6 68999999 999999999887 466778899999999999998 7 999999999999999987632 344
Q ss_pred EcCCCcceEEEEEeCC-----------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEE
Q 004683 529 LKGHQNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 591 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~-----------------g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 591 (737)
+.+|...|.+++|+|+ ++++++|+.|+.|++||++.... ...+. ...+|. ..|.+++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~ 219 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVA 219 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEE
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEE
Confidence 5679999999999997 47899999999999999975311 11233 344666 7899999
Q ss_pred EecCC----CEEEE-EecCcEEEEeCCCC---c-eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 592 FHPDQ----IHLLS-IHEGQIDVYEAPTL---N-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 592 ~sp~g----~~l~~-~~dg~I~iwd~~~~---~-~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
|+|++ .+|++ +.|++|++||+.+. . ....+. .|...|.+++|+|++++|++++.||+|++|+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99986 77888 58999999998762 1 112232 257899999999999999999999999999976
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=290.25 Aligned_cols=293 Identities=10% Similarity=0.038 Sum_probs=222.2
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
.+.|+|||+++|+++.|++|+ +... ..+ +.+ |...|++|+|+|+| .++++.+|+.+..
T Consensus 20 sv~~SpDG~~iASas~D~TV~--d~~~----~~~----l~g--h~~~v~~V~FsPdg-------~~~~~~~~~~~~~--- 77 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIG--QPKY----AKD----INC--NSKNLFHVKEFPLE-------FENKLDFELAQQN--- 77 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEE--EECC----CSC----CSS--BGGGTEEEEEECCC-------CCCTTTTSCCCSS---
T ss_pred EEEECCCCCEEEEEcCCceee--cccc----cce----ecC--CCccEEEEEECCCC-------CcceEEEEeCCCc---
Confidence 345999999999999999999 5332 222 345 99999999999999 4566555543211
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCC-----Ce
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-----IA 495 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~-----~v 495 (737)
.. ... .|...|.+++|+ |.+||+++ ||.|++||..+ ++..+. |.. .|
T Consensus 78 ------------------~~---~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 78 ------------------GL---LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ------------------CS---STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred ------------------eE---eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 10 011 368899999999 99999999 99999999654 666666 665 49
Q ss_pred EEEEEcCCC-eEEEEECCCeEEEEecCCCc-------EEEEE----cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 004683 496 TYFILLPQD-LFAFGFDDSSILVHCPCTKK-------TKAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 563 (737)
Q Consensus 496 ~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~-------~~~~l----~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~ 563 (737)
.+++||||| +||+|+.||+|++||+.++. .+.++ .+|...|.+++|+|+| +++++.|++|++||+.
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence 999999999 99999999999999999885 36776 6788899999999999 8889999999999998
Q ss_pred CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEE--ccCCCE
Q 004683 564 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKC 641 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~ 641 (737)
++... ...+++..+|. ..|.+++|+ |..++++.+++|++||+.+++...... +|...|.+++| +|++..
T Consensus 211 ~~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 211 ASSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp SSSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEE
T ss_pred CCccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCE
Confidence 74311 11222334555 689999999 688888778999999998777633332 37899999999 999999
Q ss_pred EEEEecCCeEEEEEcCCCeeEEEEeccc------------ccCCC----CccCceeeEEEEEccCCCCEEEEEEC
Q 004683 642 IYVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPG----TISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 642 l~sgs~dg~I~vwd~~~~~~~~~~~~~~------------~~~~g----~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
++++++||+ ++|.... +. +.+.. +...| .-.+...+.+++|+| ||+.+|+++.
T Consensus 282 La~a~edG~-klw~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 282 LLMSNKTSY-KVLLEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EEECSSCEE-EEEESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEEcCCCC-EEEeecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence 999999999 9999862 11 21110 00001 001123355999999 8999999873
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=279.60 Aligned_cols=251 Identities=14% Similarity=0.165 Sum_probs=208.7
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++|++|+.||+|++|++... ++.....+. +|...|.+++|
T Consensus 7 ~~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~--~h~~~v~~~~~ 63 (379)
T 3jrp_A 7 ANA--HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLT--GHEGPVWRVDW 63 (379)
T ss_dssp EEE--CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------EEEEEEEEC--CCSSCEEEEEE
T ss_pred ecC--CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------cceeeeEec--CCCCcEEEEEe
Confidence 445 9999999999999999999999999999997632 112222222 69999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCCCc--EEEEE
Q 004683 462 R----GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKL 529 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~~~--~~~~l 529 (737)
+ +++|++++ ||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.|+.|++||+.++. ....+
T Consensus 64 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 64 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp CCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe
Confidence 7 68999999 9999999999987 77788899999999999999 8 99999999999999998873 44567
Q ss_pred cCCCcceEEEEEeC-------------CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC-
Q 004683 530 KGHQNRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD- 595 (737)
Q Consensus 530 ~~~~~~v~~l~~sp-------------~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~- 595 (737)
.+|...|.+++|+| ++.++++++.||.|++||++++.... .... ...+|. ..|.+++|+|+
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~ 218 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTV 218 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCC
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCC
Confidence 78999999999999 69999999999999999998753221 1222 234565 78999999999
Q ss_pred --CCEEEE-EecCcEEEEeCCCCc---eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 596 --QIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 596 --g~~l~~-~~dg~I~iwd~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
+.++++ +.||.|++||++++. .........|...|++++|+|++++|++++.||.|++|++..+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 888888 589999999998864 22333333468899999999999999999999999999998543
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-31 Score=287.85 Aligned_cols=288 Identities=13% Similarity=0.075 Sum_probs=227.9
Q ss_pred cCCCCCEEE-EEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccc
Q 004683 347 SLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 347 ~spdg~~la-~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
++|+...++ +++.||.|++|++........... .+.+ |.+.|.+++|+| ++++|++|+.||+|++|++..+..
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-~~~~--h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~-- 116 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-LVCG--HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL-- 116 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-CBCC--CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC--
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-eEec--CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC--
Confidence 566655444 478899999999864210101111 2455 999999999999 999999999999999999885422
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C-CEEEEEe-CCeEEEEECCCCcEEEEe--cCCCCCeEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYF 498 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~-~~l~s~s-dg~i~vwd~~~~~~~~~~--~~~~~~v~~~ 498 (737)
... ....+..+. +|...|.+++|+ + ++|++++ ||.|++||+.+++.+..+ .+|...|.++
T Consensus 117 ---~~~---------~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 117 ---VLP---------LREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp ---SSC---------BCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred ---ccc---------cCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 000 001111111 699999999999 4 6999999 999999999999999999 7899999999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEE-cCCCcc-eEEEEEeCCCCEEEEE---eCCCcEEEEeCCCCceeecee
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCSKF 572 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l-~~~~~~-v~~l~~sp~g~~l~s~---s~dg~I~lwdl~~~~~~~~~~ 572 (737)
+|+|++ .|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|+++++++| +.|+.|++||++++.. +
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~ 258 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----P 258 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----C
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----C
Confidence 999999 9999999999999999999999988 778776 8999999999999999 7899999999987432 1
Q ss_pred eeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCce-eEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
+......+. ..+.+++|+|+++++++ + .||.|++||+.+++. +..+....|...|.+++|+|++.++++ .++
T Consensus 259 ~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 259 LSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred ceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 221222333 67999999999999975 5 699999999998874 445444345789999999999998875 567
Q ss_pred eEEEEEcCCCeeE
Q 004683 650 HVKVFDTSTLELR 662 (737)
Q Consensus 650 ~I~vwd~~~~~~~ 662 (737)
.+++|++.++...
T Consensus 334 ~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 334 IARFYKLHERKCE 346 (402)
T ss_dssp EEEEEEEETTEEE
T ss_pred eEEEEEcCCCcEE
Confidence 9999999987643
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.2e-31 Score=288.57 Aligned_cols=268 Identities=18% Similarity=0.254 Sum_probs=220.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+.+||+.+++|+.||+|++||+.+ +.+... +.+ |.+.|.+++| ++++|++|+.||+|++||+.++
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~~~--h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~------ 203 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-LTG--HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG------ 203 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSS----CCEEEE-ECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC------
T ss_pred EEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-EcC--CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC------
Confidence 556899999999999999999984 555544 666 9999999999 8899999999999999987643
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEE---EEecCCCCCeEEEEEcC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILLP 502 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~ 502 (737)
..+..+. +|...|.+++|+++.+++|+ ||.|++||+.++... ..+.+|...|.+++|
T Consensus 204 ---------------~~~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 204 ---------------EMLNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp ---------------CEEEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred ---------------cEEEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 2222222 69999999999988999999 999999999987655 667799999999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
++ .+++|+.||.|++||+++++.+..+.+|...|.+++++ ++++++|+.||.|++||++++. .+.. ..+|.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-----~~~~-~~~h~ 336 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-----CLRV-LEGHE 336 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-----EEEE-ECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-----EEEE-EeCCc
Confidence 67 99999999999999999999999999999999999994 6899999999999999999853 3332 33555
Q ss_pred CCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCc---------eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 582 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
..|.+++| ++.++++ +.||.|++||+.++. ++..+.. |...|.+++| ++++|++|+.||.|
T Consensus 337 ---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 ---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp ---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred ---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 78999998 6788888 589999999987655 6777754 7889999999 78899999999999
Q ss_pred EEEEcCCCeeEEEE
Q 004683 652 KVFDTSTLELRCQI 665 (737)
Q Consensus 652 ~vwd~~~~~~~~~~ 665 (737)
++||+.+.......
T Consensus 408 ~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 408 LIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEC----------
T ss_pred EEEECCCCCCcccC
Confidence 99999987655443
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-30 Score=277.34 Aligned_cols=283 Identities=13% Similarity=0.096 Sum_probs=224.9
Q ss_pred cCCCCCCCCeEEEEEecC---CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEE
Q 004683 382 LPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 458 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspd---g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~ 458 (737)
+.+ |.+.|.+++|+|+ |++|++|+.||.|++|++.+... ....... +|...|.+
T Consensus 35 ~~~--h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~--~h~~~v~~ 91 (368)
T 3mmy_A 35 TSS--PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------TIPKAQQ--MHTGPVLD 91 (368)
T ss_dssp SSC--CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------EEEEEEE--ECSSCEEE
T ss_pred ccC--CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------eeEEEec--cccCCEEE
Confidence 555 9999999999999 69999999999999999874111 0101111 59999999
Q ss_pred EEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEE--cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC
Q 004683 459 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 459 v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
++|+ +++|++++ ||.|++||+.+++.+. +.+|...|.+++| +|++ .+++|+.||.|++||+++++.+..+..+
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999 88999999 9999999999888766 5579999999999 8999 9999999999999999999998888865
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE----EEE-EecCcE
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQI 607 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~----l~~-~~dg~I 607 (737)
. .+.++.+.+ ..+++++.++.+++||++..... .......+. ..+.++++.+++.. +++ +.||.|
T Consensus 171 ~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 171 E-RCYCADVIY--PMAVVATAERGLIVYQLENQPSE----FRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp S-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEE----EEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred C-CceEEEecC--CeeEEEeCCCcEEEEEeccccch----hhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 4 566666664 58889999999999999874321 121222222 45667777666543 666 689999
Q ss_pred EEEeCCCC---ceeEEecCCCCCC------------CeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccC
Q 004683 608 DVYEAPTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 672 (737)
Q Consensus 608 ~iwd~~~~---~~~~~~~~~~h~~------------~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~ 672 (737)
++||++.. ..+..+.. |.. .|++++|+|++++|++|+.||.|++||+.+++.+..+..|
T Consensus 241 ~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---- 314 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL---- 314 (368)
T ss_dssp EEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----
T ss_pred EEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC----
Confidence 99999887 45556654 333 7999999999999999999999999999999988887643
Q ss_pred CCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 673 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 673 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
...+. +++|+| ++.+|++|+.|+..+.|++-.
T Consensus 315 ----~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 ----DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp ----SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred ----CCCce--EEEECC-CCCeEEEEecccccccccccC
Confidence 33454 999999 899999999998666655443
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=286.67 Aligned_cols=302 Identities=10% Similarity=0.072 Sum_probs=219.3
Q ss_pred ccccCCCCCEEEEEecCCeEEEeecCccCC-----CCce-eeeecCCCCCC------------CCeEEEEEecCC--CEE
Q 004683 344 ESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--DFL 403 (737)
Q Consensus 344 ~~~~spdg~~la~~s~dg~v~iW~~~~~~~-----~~~~-~~~~l~~~~h~------------~~V~~v~fspdg--~~L 403 (737)
.+.|+|+|+++|+|+.||.|++|++..... .... ....+.+ |. ..|.+++|+|++ .+|
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l 110 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS--HEPEFDYLKSLEIEEKINKIRWLPQKNAAQF 110 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC--CCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc--ccccccccccccccCceEEEEEcCCCCcceE
Confidence 445999999999999999999999985320 0111 1223556 87 889999999998 899
Q ss_pred EEEECCCcEEEeeccCCccc---------cccc-----ceee-----eeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 404 VALTQTATHKLWKWQSNKQS---------LEEE-----NVNM-----ESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 404 ~s~s~dg~i~iWd~~~~~~~---------~g~~-----~~~~-----~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
++++.|++|++|++...... .|.. ...+ .+.-|.... .... ....+|...|.+++|+
T Consensus 111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEECTT
T ss_pred EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEcCC
Confidence 99999999999998753220 0000 0000 000000000 0011 1122699999999999
Q ss_pred CCEEEEEeCCeEEEEECCC-CcEEEE-------ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcE----EEE
Q 004683 463 GSHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAK 528 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~-~~~~~~-------~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~----~~~ 528 (737)
+++|++|.||.|++||+.+ ++.... +.+|...|.+++|+|++ .|++|+.||.|++||+++++. +..
T Consensus 189 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 189 YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 8899998899999999984 444442 45899999999999997 999999999999999999886 788
Q ss_pred EcCCCc------------ceEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCC------------
Q 004683 529 LKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPE------------ 583 (737)
Q Consensus 529 l~~~~~------------~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~------------ 583 (737)
+.+|.. .|.+++|+|+|+++++++. +.|++||++. +.. +.. ..+|...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-----VET-YQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----SCC-EESCGGGTTTHHHHHHTSG
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----cce-eeccccccccccccccccc
Confidence 888876 8999999999999999998 9999999986 332 221 1222200
Q ss_pred CCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEec------------------------------CCCCCCCeEE
Q 004683 584 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV------------------------------PDKMDLPITY 632 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~------------------------------~~~h~~~v~~ 632 (737)
...+..++|+|++++|+++ .||.|++||+.+++.+.... ...+...|.+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 0013459999999999985 89999999999887653111 0123567899
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcC
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
++|+|++++|++++.++ +++|..+
T Consensus 422 ~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEECSSSSEEEEECSSC-EEEEECC
T ss_pred EEECCCCCEEEEEecce-eeeeccc
Confidence 99999999999998776 8888643
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=7.5e-31 Score=285.23 Aligned_cols=288 Identities=11% Similarity=0.031 Sum_probs=229.3
Q ss_pred CCeEEEEEecCCCEEE-EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---CC
Q 004683 389 GRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 464 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~-s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~ 464 (737)
.....++++|+...++ +++.||.|+||++..... .. ..... ..+|.+.|.+++|+ ++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----~~-------------~~~~~--~~~h~~~V~~~~~~p~~~~ 95 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----VD-------------KNVPL--VCGHTAPVLDIAWCPHNDN 95 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----CC-------------TTCCC--BCCCSSCEEEEEECTTCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----CC-------------CCCce--EecCCCCEEEEEeCCCCCC
Confidence 3455789999876544 478899999999864211 00 00011 12699999999998 78
Q ss_pred EEEEEe-CCeEEEEECCCC-------cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEE--cCC
Q 004683 465 HLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGH 532 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l--~~~ 532 (737)
+|++|+ ||+|++||+.++ +.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+.+++.+..+ .+|
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 999999 999999999987 6788899999999999999997 8999999999999999999999999 789
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE----ecCcEE
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQID 608 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~----~dg~I~ 608 (737)
...|.+++|+|+++++++++.||.|++||+++++ .+..+..+|.. ..+.+++|+|++++++++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 9999999999999999999999999999999853 33333244542 348999999999999986 689999
Q ss_pred EEeCCCCce-eEEecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEEcCCCee-EEEEecccccCCCCccCceeeEEE
Q 004683 609 VYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVI 685 (737)
Q Consensus 609 iwd~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s-gs~dg~I~vwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v 685 (737)
+||++++.. +..... .+...+.+++|+|++++|++ |+.||.|++||+.+++. ...+..+. +...+. ++
T Consensus 249 iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~------~~~~v~--~~ 319 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS------SKESQR--GM 319 (402)
T ss_dssp EEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC------CSSCCS--EE
T ss_pred EEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc------cCCccc--ce
Confidence 999988764 333332 35778999999999999974 55799999999999874 44444321 123344 99
Q ss_pred EEccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 686 AAHPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 686 ~~sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
+|+| ++.++++ .++.+++|++.+++.
T Consensus 320 ~~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 320 GYMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEec-cccccee--cceeEEEEEcCCCcE
Confidence 9999 7887765 567999999988754
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=6.4e-30 Score=270.05 Aligned_cols=250 Identities=14% Similarity=0.110 Sum_probs=205.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC----cEEEEecCCCCCeEEEEEcC--CC-eEEEEECCCeEEEEec
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP 520 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~-~l~sgs~dg~I~vwd~ 520 (737)
+|.+.|.+++|+ +++|++|+ ||.|++||+.++ +....+.+|...|.+++|+| ++ +|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 799999999999 88999999 999999999876 46777889999999999999 58 9999999999999999
Q ss_pred CCC---------cEEEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceee----e---ecccCCCC
Q 004683 521 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFL----H---SFQTGLVP 582 (737)
Q Consensus 521 ~~~---------~~~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~----~---~~~~~~~~ 582 (737)
.++ +.+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++....... . .....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL- 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence 887 567888899999999999999 99999999999999999988653322111 1 0112344
Q ss_pred CCCCeEEEEEecC---CCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEE
Q 004683 583 ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF 654 (737)
Q Consensus 583 ~~~~v~~l~~sp~---g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~----~~l~sgs~dg~I~vw 654 (737)
..+.+++|+|+ +..+++ +.++.+.+|+...+..........|...|++++|+|++ ++|++|+.||.|++|
T Consensus 168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 78999999997 888888 58888888888777653333333478999999999998 899999999999999
Q ss_pred EcCCCe----------------------------------------------eEEEEecccccCCCCccCceeeEEEEEc
Q 004683 655 DTSTLE----------------------------------------------LRCQINLTAYAQPGTISLELYPLVIAAH 688 (737)
Q Consensus 655 d~~~~~----------------------------------------------~~~~~~~~~~~~~g~~~~~v~~~~v~~s 688 (737)
|+.++. .+..+. +| ...+ .+++|+
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v--~~~~~s 315 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEV--WSVSWN 315 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEEC-------TT-SSCE--EEEEEC
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccE--EEEEEc
Confidence 998752 222222 22 3334 499999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCce
Q 004683 689 PLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
| ++.+|++|+.||.|+||++.+++.
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred C-CCCEEEEecCCCcEEEEecCcCcc
Confidence 9 899999999999999999998763
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.7e-30 Score=271.89 Aligned_cols=254 Identities=13% Similarity=0.134 Sum_probs=209.1
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++|++|+.||+|++|++..... . ..+...+. +|...|.+++|
T Consensus 7 ~~g--H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~------------~~~~~~~~--~~~~~v~~~~~ 65 (351)
T 3f3f_A 7 DSG--HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----N------------WELSDSWR--AHDSSIVAIDW 65 (351)
T ss_dssp ECC--CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----C------------EEEEEEEE--CCSSCEEEEEE
T ss_pred Ccc--cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----c------------ceecceec--cCCCcEEEEEE
Confidence 455 999999999999999999999999999999874321 0 01111111 69999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCCC---------cEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCCCc
Q 004683 462 R----GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~~~ 524 (737)
+ +++|++++ ||.|++||+.++ +.+..+.+|...|.+++|+|+ + .+++++.||.|++||+++++
T Consensus 66 ~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 66 ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred cCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 8 67999999 999999999887 567888899999999999999 8 99999999999999998876
Q ss_pred EEEEEc-------------CCCcceEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 525 TKAKLK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 525 ~~~~l~-------------~~~~~v~~l~~sp~---g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
.+..+. +|...+.+++|+|+ +..+++++.|+.+.+|+...+... .+. ...+|. ..|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-~~~~h~---~~i~ 218 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH---VAA-KLPGHK---SLIR 218 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE---EEE-ECCCCC---SCEE
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee---eee-ecCCCC---ccee
Confidence 543322 57789999999997 899999999999988887764321 223 233555 7999
Q ss_pred EEEEecCC----CEEEE-EecCcEEEEeCCCC----------------------------------------------ce
Q 004683 589 HIQFHPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NH 617 (737)
Q Consensus 589 ~l~~sp~g----~~l~~-~~dg~I~iwd~~~~----------------------------------------------~~ 617 (737)
+++|+|++ ++|++ +.||.|++||++++ +.
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 99999998 78888 58999999999764 44
Q ss_pred eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 618 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
+..+.+ |...|++++|+|++++|++|+.||.|++|++.+++....+
T Consensus 299 ~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDD--HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECT--TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEec--ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 455543 7889999999999999999999999999999998766554
No 103
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.3e-31 Score=299.32 Aligned_cols=274 Identities=13% Similarity=0.050 Sum_probs=204.2
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCC-ce-----eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPS-EC-----RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~-~~-----~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
+++.+||+++.||+|++|++....... .+ ....+.+ |...|.+++|+|++ .|++|+.||+|++||+.++..
T Consensus 223 ~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~--h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~ 299 (524)
T 2j04_B 223 HLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL--ADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV 299 (524)
T ss_dssp SSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC--TTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS
T ss_pred CCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc--CCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC
Confidence 447899999999999999997532110 00 0113555 89999999999875 799999999999999874211
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE--EEe--C-CEEEEEe-CCeEEEEECCCCcEEEEecCCCC--C
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPP--I 494 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v--~~s--~-~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~--~ 494 (737)
....+ .+|...|.++ +|+ + .+|++|+ |++|++||+.++++...+.+|.. .
T Consensus 300 --------------------~~~~~--~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 300 --------------------PSFYD--QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp --------------------CSEEE--ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred --------------------ceEEe--ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 00001 1699999999 456 5 7899999 99999999998887777766653 5
Q ss_pred eEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 495 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 495 v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+... .+
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~------~~ 431 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR------LL 431 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS------TT
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh------hc
Confidence 7899999999 9999999999999999999988889999999999999999999999999999999998752 12
Q ss_pred eeccc---CCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCC-CCceeEEecCCCCCCCeEEEEEccCC---CEEEEEe
Q 004683 574 HSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG---KCIYVSC 646 (737)
Q Consensus 574 ~~~~~---~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~sgs 646 (737)
..... .+. ...+.+++|+|+|..+.... .+.+|+.. ++.++..+.+ |...|.+++|+|++ .++++|+
T Consensus 432 ~~~~~~~~~~~--~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 432 HGIKNSSATQK--SLRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp TCC------CC--CCEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred cccccCcccee--eeEEEEeccCCCCCeEEccC--CceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhc
Confidence 21110 111 03578999999998553322 23344332 4566666654 68999999999995 4999999
Q ss_pred cCCeEEEEEcCCC
Q 004683 647 KSGHVKVFDTSTL 659 (737)
Q Consensus 647 ~dg~I~vwd~~~~ 659 (737)
.||.|+||++...
T Consensus 506 ~~g~vrlw~l~~~ 518 (524)
T 2j04_B 506 SAGLLTLEYLSLE 518 (524)
T ss_dssp TTSEEEEEECSCC
T ss_pred cCceEEEEEcccc
Confidence 9999999998743
No 104
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=1.3e-29 Score=290.56 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=240.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCC-eEEEEEe---
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR--- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~-V~~v~~s--- 462 (737)
|.+.|.+++|||+|++|++++ ++.|++|++.++..+. .....+. +|... |.+++|+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-----------------~~~~~~~--~h~~~~v~~~~~sp~~ 76 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-----------------PPVVQFT--GHGSSVVTTVKFSPIK 76 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-----------------CSEEEEC--TTTTSCEEEEEECSST
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-----------------ccceEEe--cCCCceEEEEEECcCC
Confidence 889999999999999999998 7899999877431000 1111122 69999 9999998
Q ss_pred -CCEEEEEe-CCeEEEEECCCC--------cEEEEecCCCCCeEEEEEcCCC-eEEEEECC----CeEEEEecCCCcEEE
Q 004683 463 -GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKA 527 (737)
Q Consensus 463 -~~~l~s~s-dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d----g~I~vwd~~~~~~~~ 527 (737)
+++|++++ ||.|++||+.++ +....+..|...|.+++|+|++ .+++++.+ +.|++|| +++.+.
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~ 154 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG 154 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence 57999999 999999999755 6777888999999999999999 99999987 6888888 577889
Q ss_pred EEcCCCcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCC---CeEEEEEecC-CCEEEE-
Q 004683 528 KLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QIHLLS- 601 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~-g~~l~~- 601 (737)
.+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++ .+.. ..+|. . .|.+++|+|+ ++++++
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~-~~~~~---~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSAS-DRTHH---KQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEE-ECSSS---CTTCCEEEEEECSTTCCEEEEE
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeee-ecccC---CCCceEEEEEECCCCCCEEEEE
Confidence 9999999999999999998 89999999999999998843 3332 33454 5 8999999999 999998
Q ss_pred EecCcEEEEeCCCCceeEEecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCc
Q 004683 602 IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 679 (737)
Q Consensus 602 ~~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~ 679 (737)
+.|+.|++||+++++.+..+... .|...|.+++|+ +++++++++.||.|++||+.+++.+..+..+. . ...
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~--~~~ 298 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----Q--QLG 298 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----T--CGG
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----C--ccc
Confidence 58999999999999998887321 368999999999 99999999999999999999999888876431 0 111
Q ss_pred eeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 680 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 680 v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
..+.++.|. ++.++++++.||.|++||+.+++.....
T Consensus 299 ~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 299 NQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp GCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred CceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 224477774 5789999999999999999886654433
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-30 Score=275.36 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=205.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECC--CCcEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~ 522 (737)
+|...|.+++|+ +++|++|+ ||.|++||+. +++.+..+.+|...|++++|+++ + .|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 799999999999 88999999 9999999998 66778889999999999999987 7 999999999999999999
Q ss_pred Cc--EEEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec----
Q 004683 523 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 594 (737)
Q Consensus 523 ~~--~~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---- 594 (737)
++ .+..+.+|...|.+++|+|+ +.++++++.|+.|++||+++....... ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE----EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE----EecCCC---CceEEEEEcCcccc
Confidence 87 77888889999999999999 999999999999999999885322211 223454 7899999999
Q ss_pred ---------CCCEEEE-EecCcEEEEeCCCCc----eeEEecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEEcC
Q 004683 595 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 595 ---------~g~~l~~-~~dg~I~iwd~~~~~----~~~~~~~~~h~~~v~~~~~sp~---~~~l~sgs~dg~I~vwd~~ 657 (737)
++.++++ +.|+.|++||++++. +...+. .|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6888888 589999999998765 334443 37899999999999 8999999999999999999
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++......... ...+| ... +.+++|+| ++.+|++++.||.|++|++..+.
T Consensus 240 ~~~~~~~~~~~--~~~~~-~~~--v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 240 NEQGPWKKTLL--KEEKF-PDV--LWRASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp STTSCCEEEES--SSSCC-SSC--EEEEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCccceeeee--ccccC-CCc--EEEEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 87522111111 00111 333 44999999 89999999999999999998543
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9.5e-30 Score=269.27 Aligned_cols=276 Identities=11% Similarity=0.014 Sum_probs=220.3
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEeec-cCCcc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSNKQ 422 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~-~~~~~ 422 (737)
+.|+|+|+++++++.|+.|++|++........... +.+ |...|.+++|+|+++ +|++|+.||.|++|++ .+...
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SLR--YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--EEE--CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee--eee--cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 34889999999999999999999985310011222 234 899999999999999 9999999999999997 64211
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCC--CCCCeEEEEEe-CCEEEEEe-CCeEEEEECCC---------CcEEEEec
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLATFA 489 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~--h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~---------~~~~~~~~ 489 (737)
..+. + |...|.+++|+ ++++++++ |+.|++||+.+ ++.+..+.
T Consensus 93 ----------------------~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 93 ----------------------QALT--NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp ----------------------EECB--SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred ----------------------Eecc--ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 1111 5 99999999999 99999999 99999999987 66666665
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCC-Cc--EEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC
Q 004683 490 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW 565 (737)
Q Consensus 490 ~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~-~~--~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~ 565 (737)
|...|.+++|+|++ +++++.|+.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++||++..
T Consensus 149 -~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 88899999999887 99999999999999998 54 3344556888999999999 9999999999999999999874
Q ss_pred --ceeeceeeeecccCCC------CCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEc
Q 004683 566 --KKLCSKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 636 (737)
Q Consensus 566 --~~~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 636 (737)
... ...... ...|. .+...|.+++|+|++++|++ +.||.|++||+.+++.+..+..+ |...|.+++
T Consensus 227 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~-- 301 (342)
T 1yfq_A 227 GDDYN-SSKRFA-FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA-- 301 (342)
T ss_dssp CCSTT-CTTCEE-EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE--
T ss_pred Ccccc-ccccee-eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cCCCceEec--
Confidence 000 011121 12221 00148999999999999998 58999999999999998888652 288999999
Q ss_pred cCCCEEEEEecCCe-EEEEE
Q 004683 637 CDGKCIYVSCKSGH-VKVFD 655 (737)
Q Consensus 637 p~~~~l~sgs~dg~-I~vwd 655 (737)
|++++|++|+.||. .+.|.
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSS
T ss_pred CCCCeEEEEecCCccccccc
Confidence 99999999999998 55554
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.6e-28 Score=267.54 Aligned_cols=280 Identities=16% Similarity=0.125 Sum_probs=225.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
...+.+++|+|++.++++++.+++|++||+.++.. ... ...+ .. .+|...|.+++|+ +.+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~-------~~~~----~~--~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----VRL-------SPPE----KY--KKKLGFVETISIPEHNEL 183 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE-----EEE-------CCCH----HH--HTTCCEEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----eee-------cCcc----cc--cccCCceeEEEEcCCCEE
Confidence 34577999999888888888899999998774332 100 0000 01 1688999999998 778
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eE-EEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEe
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 542 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l-~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s 542 (737)
+++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence 88888 8999999999999999999999999999999999 66 45558999999999999988888754 559999999
Q ss_pred CCCCEEEEEe--------CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeC
Q 004683 543 LSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 612 (737)
Q Consensus 543 p~g~~l~s~s--------~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~ 612 (737)
|+|+.+++++ .||.|++||+.+++.... + .+. ..+.+++|+|+++.+++ + .++.|++||+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----~--~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-----I--GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----E--EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-----c--cCC---CCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 9999999888 588999999998543221 1 111 56889999999987655 4 7899999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec---------------CCeEEEEEcCCCeeEEEEecccccCCCCcc
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---------------SGHVKVFDTSTLELRCQINLTAYAQPGTIS 677 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~---------------dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~ 677 (737)
.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. .
T Consensus 333 ~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~ 400 (433)
T 3bws_A 333 KEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------G 400 (433)
T ss_dssp TTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------S
T ss_pred CCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------C
Confidence 9998887774 3677999999999999998876 57999999999998887753 1
Q ss_pred CceeeEEEEEccCCCCEEEEEEC-CCcEEEEecCC
Q 004683 678 LELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 711 (737)
Q Consensus 678 ~~v~~~~v~~sp~d~~~las~s~-Dg~V~iWd~~~ 711 (737)
.. +.+++|+| ++++|++++. |+.|++|++..
T Consensus 401 ~~--~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQ--PTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SS--EEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred CC--CceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 22 45999999 8889888775 99999999863
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-29 Score=275.71 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=227.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCC--------------------------
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-------------------------- 441 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~-------------------------- 441 (737)
..++.+++|+|+|++|+++ .++.|++||+.++... ... ..|.....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW--EFA-----GKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE--EEE-----EEEECCC---------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc--eee-----eecCCccccccccccccchhhccccccccccccc
Confidence 3578999999999966555 5789999999866510 011 01110000
Q ss_pred ---------------eeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCeEEEEECC--CCcEEEEec--CCCCCeEEE
Q 004683 442 ---------------LVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYF 498 (737)
Q Consensus 442 ---------------~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~ 498 (737)
.........+|.+.|.+++|+ +++| ++++ ||.|++||+. +++.+..+. .|...|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 000000011467789999999 7885 7887 9999999999 888888886 667899999
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEE----EEcCCCcceEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~----~l~~~~~~v~~l~~sp~---g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
+|+|++ .|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ ++++++++.|+.|++||++++.
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---- 231 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---- 231 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----
Confidence 999999 99999999999999998876543 67789999999999999 9999999999999999998743
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCC-----------------------CC
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KM 626 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~-----------------------~h 626 (737)
.+..+..+|. ..|.+++|+ ++++|++ +.|+.|++||+.+++++..+... ..
T Consensus 232 -~~~~~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 -IVDKWLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp -CEEEECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred -eeeeeecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 3333345666 789999999 9999998 58999999999999988877521 12
Q ss_pred CCCeEEEEEccCCCEEEEEe-cCCeEEEEEc--CCC---eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 627 DLPITYATYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~--~~~---~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
...|.+++|+|++++|++++ .|+.|++|++ .++ +.+..+..+ .. +.+++|+| ++.++++++.
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---------~~--v~~~~~~~-~~~~v~~~~~ 374 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---------YN--VISLSAHN-DEFQVTLDNK 374 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---------SC--EEEEEEET-TEEEEEECCT
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---------Cc--eEEEEecC-CcEEEEEecc
Confidence 46799999999999999999 8999999999 555 555555421 22 45999999 5544444443
Q ss_pred ------CCcEEEEecCCCceee
Q 004683 701 ------NGRVHVIEPLESEVEW 716 (737)
Q Consensus 701 ------Dg~V~iWd~~~~~~~w 716 (737)
+..|.+|.+......|
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEE
T ss_pred cCCCCCCcceEEEEEEcCCCeE
Confidence 4568999886554445
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=268.06 Aligned_cols=280 Identities=9% Similarity=0.017 Sum_probs=215.2
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+++|+..+++|+.||+|++||+.. +.+... + ....|.++.|+|+ +++++.|++|++|+..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~----~~~~~~-~----~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~-------- 103 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD----SKTITT-I----TTPNPRTGGEHPA---IISRGPCNRLLLLYPG-------- 103 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS----SSCEEE-E----EEECCCTTCCCCS---EEEECSTTEEEEEETT--------
T ss_pred hcCCCCEEEEECCCCcEEEEECCC----CcEEEE-E----ecCCceeeeeCCc---eEEecCCCeEEEEEcc--------
Confidence 668899999999999999999985 333222 2 1356888889998 8999999999999854
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCCcEEEEec-CCCCCeEEEEEcC--C
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLP--Q 503 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~ 503 (737)
+.+.+||..+++.+..+. +|...|.+++|+| +
T Consensus 104 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 ---------------------------------------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138 (343)
T ss_dssp ---------------------------------------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---
T ss_pred ---------------------------------------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC
Confidence 345678887777666665 7778899999999 9
Q ss_pred C-eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC
Q 004683 504 D-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 581 (737)
Q Consensus 504 ~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~ 581 (737)
+ ++++|+.||.|++||+++++....... |...+.+++|+|+|.++++|+.||.|++||+++++.. ...+..+|.
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~h~ 214 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVDEE 214 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCCTT
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEeccCC
Confidence 9 999999999999999999998776644 5568999999999999999999999999999985421 022333366
Q ss_pred CCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCC-CCCCCe--EEEEEccCCCEEEEEec-CCeEEEEEcC
Q 004683 582 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDTS 657 (737)
Q Consensus 582 ~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~-~h~~~v--~~~~~sp~~~~l~sgs~-dg~I~vwd~~ 657 (737)
.+|.+++|+|+|.+|+++.++.|++||+++++.+..+... .|...+ .+++|+|+|++|++++. |+.|++|++.
T Consensus 215 ---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 215 ---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp ---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 7999999999999999976789999999988776554321 012233 46999999999999998 9999999997
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEcc--CCCCEEEEEECCCcEEEEecCCC
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp--~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+........ .+ ..++|+| .+...+++++.||.+.++-....
T Consensus 292 ~~~~~~~~~------------~~--~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 292 KKTKNWTKD------------EE--SALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp TTTCSEEEE------------EE--EECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred ccccceEec------------Cc--eeEecCccccccceeEEEecCCceEEEEecCC
Confidence 765443321 12 2555655 24568888888998888765443
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=280.83 Aligned_cols=265 Identities=12% Similarity=0.111 Sum_probs=205.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 465 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 465 (737)
-...|.+++|||||+++||+|.|++|+ |... +..+ .+|...|.+++|+ ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~---------------------~~~l-----~gh~~~v~~V~FsPdg- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKY---------------------AKDI-----NCNSKNLFHVKEFPLE- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECC---------------------CSCC-----SSBGGGTEEEEEECCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccc---------------------ccee-----cCCCccEEEEEECCCC-
Confidence 367899999999999999999999997 5331 1111 1699999999998 22
Q ss_pred EEEEeCCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc-----ceEE
Q 004683 466 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC 538 (737)
Q Consensus 466 l~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~-----~v~~ 538 (737)
.+..|++.+++....+. .|...|.+++|+|+| .||+++.||.|++||..+ ++..+. |.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 44445554444333343 567889999999999 999999999999999544 666677 665 4999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeec--eeeeec---ccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCC
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 613 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~--~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~ 613 (737)
++|+|||++|++|+.||+|++||+.++..... ..+.++ ..+|. ..|.+++|+|+| .++++.|+.|++||+.
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 99999999999999999999999998532000 022323 35566 799999999999 5555799999999998
Q ss_pred CCce---eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE--c
Q 004683 614 TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H 688 (737)
Q Consensus 614 ~~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~--s 688 (737)
.+.. ..++.. .|...|.+++|+ |+.|++++ +++|++||+.+++...... || ...++ .++| +
T Consensus 211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~~s 276 (588)
T 2j04_A 211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLNHE 276 (588)
T ss_dssp SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEETTC
T ss_pred CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEeeeC
Confidence 7773 245533 367899999999 68999987 6999999999988743322 32 44566 8999 9
Q ss_pred cCCCCEEEEEECCCcEEEEecC
Q 004683 689 PLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~ 710 (737)
| |+..+++++.||+ ++|...
T Consensus 277 ~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 K-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-SCEEEEECSSCEE-EEEESS
T ss_pred C-CCCEEEEEcCCCC-EEEeec
Confidence 9 8899999999999 999985
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.3e-27 Score=258.32 Aligned_cols=316 Identities=11% Similarity=0.064 Sum_probs=235.7
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEeeccCCccccccccee
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 430 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L-~s~s~dg~i~iWd~~~~~~~~g~~~~~ 430 (737)
..+++++.|+.|++||+.. +.+... +.+ | ..+.+++|+|+|+++ ++++.|++|++||+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----~~~~~~-~~~--~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---------- 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----NKVTAT-IPV--G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------- 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEE-EEC--S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----------
T ss_pred EEEEEcCCCCEEEEEECCC----CeEEEE-eec--C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC----------
Confidence 4578889999999999984 455443 444 3 569999999999987 56668999999887632
Q ss_pred eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-e
Q 004683 431 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 505 (737)
Q Consensus 431 ~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 505 (737)
+++.... +...+.+++|+ ++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus 65 -----------~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 65 -----------NVIATVP---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK 129 (391)
T ss_dssp -----------EEEEEEE---CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred -----------eEEEEEE---CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE
Confidence 2222222 33489999999 77775555 699999999999988888755 468999999999 6
Q ss_pred E-EEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCC
Q 004683 506 F-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 506 l-~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 583 (737)
+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++. ...+. .+
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~-~~--- 199 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----IDTVK-VE--- 199 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEE-CS---
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-----EEEEe-cC---
Confidence 6 68888999999999999998888765 457999999999987 5777889999999998543 22222 22
Q ss_pred CCCeEEEEEecCCCEEEEE----ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEE-EEEecCCeEEEEEcCC
Q 004683 584 TTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST 658 (737)
Q Consensus 584 ~~~v~~l~~sp~g~~l~~~----~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~sgs~dg~I~vwd~~~ 658 (737)
..+.+++|+|+|++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++++ ++++.|+.|++||+.+
T Consensus 200 -~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 578999999999988874 478999999999998888765 3458899999999988 5678899999999999
Q ss_pred CeeEEEEecccccCC-C------CccCceeeEEEEEccCC-----C--CEEEEEECCCcEEEEecCCCce
Q 004683 659 LELRCQINLTAYAQP-G------TISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~-g------~~~~~v~~~~v~~sp~d-----~--~~las~s~Dg~V~iWd~~~~~~ 714 (737)
++.+..+..+..... | +......+....+++.. . -.+...+.|..+++|++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 999888764321100 0 00000111122222211 1 3466677789999999987753
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=265.09 Aligned_cols=293 Identities=11% Similarity=0.126 Sum_probs=222.5
Q ss_pred CcceeeccCCCC-CcceeeeCCCCccccccCCC---CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEE
Q 004683 319 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 394 (737)
Q Consensus 319 ~~~l~~~~gh~~-~~s~l~~~~~~~~~~~~spd---g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v 394 (737)
..+++.+.+|.. +.+ +.|+|+ |+++++++.||.|++|++.. .+......+.+ |...|.++
T Consensus 29 ~~~~~~~~~h~~~v~~-----------~~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~--h~~~v~~~ 92 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGC-----------LSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQM--HTGPVLDV 92 (368)
T ss_dssp TCCEECSSCCSSCEEE-----------EEECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEEEEEE--CSSCEEEE
T ss_pred cceeEeccCCCCceEE-----------EEEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEEEecc--ccCCEEEE
Confidence 445555566665 333 236677 69999999999999999985 24444333555 89999999
Q ss_pred EEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE--e--CCEEEEEe
Q 004683 395 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS 470 (737)
Q Consensus 395 ~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~--s--~~~l~s~s 470 (737)
+|+|+|++|++++.||+|++||+.+.. ..... +|...|.+++| + ++++++++
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------------~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~ 148 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQ---------------------AIQIA---QHDAPVKTIHWIKAPNYSCVMTGS 148 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTE---------------------EEEEE---ECSSCEEEEEEEECSSCEEEEEEE
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCC---------------------ceeec---cccCceEEEEEEeCCCCCEEEEcc
Confidence 999999999999999999999877432 22211 48999999999 6 77899999
Q ss_pred -CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE--cCCCcceEEEEEeCCCCE
Q 004683 471 -GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 471 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~~~~~v~~l~~sp~g~~ 547 (737)
||.|++||+.+++.+..+..+. .+.++.+.++ .+++++.++.+.+|+++........ ..+...+.++.+.+++..
T Consensus 149 ~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 149 WDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp TTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence 9999999999999998888765 4556665533 7888889999999999876544332 224456667777665544
Q ss_pred ----EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCC---------CCCCeEEEEEecCCCEEEE-EecCcEEEEeCC
Q 004683 548 ----LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 613 (737)
Q Consensus 548 ----l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~ 613 (737)
+++++.||.|++||++..... ..+. ...+|.. +...|.+++|+|++++|++ +.||.|++||+.
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINPPNPA--KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSCSCHH--HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCeEEEecCCCcEEEEecCCCCcc--ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 999999999999999874220 1111 1122220 0026999999999999998 589999999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
+++++..+.. |...|.+++|+|+|++|++|+.|+..+.|++..
T Consensus 304 ~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 304 ARTKLKTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp TTEEEEECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CCcEEEEecC--CCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9999988864 688999999999999999999998665555443
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-28 Score=263.45 Aligned_cols=285 Identities=9% Similarity=0.013 Sum_probs=207.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
|.+.|.+++|||||++|++|+.++ ++||++.+.. ..... +...+..+++. ++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------------------~~~~~----~~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------------------HIMSQ----EMRHLSKVRMLHRTN 71 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE---------------------EEEEE----ECSCCCEEEECTTSS
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc---------------------eeeee----ecCCeEEEEEcCCCC
Confidence 899999999999999999888765 7799866321 11111 11235566666 66
Q ss_pred EEE-EEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCC-cEEEEEcCCCcceEEEEE
Q 004683 465 HLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 541 (737)
Q Consensus 465 ~l~-s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~-~~~~~l~~~~~~v~~l~~ 541 (737)
.++ +++ |++|++||+.+++.+..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. +...+++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 664 455 7899999999999998886 56689999998876 2223 3789999999988 66555543 4455667
Q ss_pred eCCCCEEEE--EeCCCcEEEEeCCCCceee----------cee-eeecccCCCCCCCCeEEEEEecCCCEEEE-EecCc-
Q 004683 542 SLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ- 606 (737)
Q Consensus 542 sp~g~~l~s--~s~dg~I~lwdl~~~~~~~----------~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~- 606 (737)
++ ..+++ |+.||.|++||+.++.... ..+ +. ...+|. ..|.+++|+|+|++|++ +.|++
T Consensus 146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp ET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCSE
T ss_pred Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCCE
Confidence 77 56666 5789999999998743100 011 33 345676 79999999999999999 58998
Q ss_pred EEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEE--EEecc---cc-----------
Q 004683 607 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLT---AY----------- 670 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~---~~----------- 670 (737)
|++||+++++++..+....|...|.+++|+|+|++|++++.|++|++||+..+.... .+... .+
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 999999999999998733368999999999999999999999999999998653211 11000 00
Q ss_pred cCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 671 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.+.+. ... ...++|+| ++.++++++.||.+++|++..++
T Consensus 300 ~~~~~-~~~--~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 300 LSVDK-HVR--GCKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCT-TCC--CCEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred eccCC-CCC--ceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 00010 111 23789999 89999999999999999987643
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.3e-28 Score=260.97 Aligned_cols=269 Identities=10% Similarity=0.080 Sum_probs=202.7
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEE-EEECCCcEEEeeccCCccc
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~-s~s~dg~i~iWd~~~~~~~ 423 (737)
+.|+|||+++|+|+.++ +++|+... ...... . +...+..+++++++++++ +++.|++|++||..++
T Consensus 25 v~fs~dg~~la~g~~~~-~~iw~~~~----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--- 91 (355)
T 3vu4_A 25 YEFNQDQSCLILSTLKS-FEIYNVHP----VAHIMS-Q----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--- 91 (355)
T ss_dssp EEECTTSSEEEEECSSE-EEEEEETT----EEEEEE-E----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT---
T ss_pred EEECCCCCEEEEEcCCE-EEEEecCC----cceeee-e----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC---
Confidence 34889999999988765 78999874 333322 1 223588999999998884 5667899999887632
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCeEEEEECCCC-cEEEEecCCCCCeEEEEEcC
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLP 502 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~ 502 (737)
..+..+ .+...|.+++|+.+.++++.++.|++||+.++ +.+..+.. ....+++++
T Consensus 92 ------------------~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 92 ------------------QDVSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN 147 (355)
T ss_dssp ------------------EEEEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET
T ss_pred ------------------cEEEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc
Confidence 222222 26678999999966777778999999999987 66555544 344556677
Q ss_pred CC-eEEE-EECCCeEEEEecCCCc----------------EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCc-EEEEeCC
Q 004683 503 QD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAV 563 (737)
Q Consensus 503 ~~-~l~s-gs~dg~I~vwd~~~~~----------------~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~-I~lwdl~ 563 (737)
. ..++ |+.||.|++||+.++. ++..+.+|...|.+++|+|+|+++++|+.|++ |++||++
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 6 3333 7899999999999865 26788999999999999999999999999998 9999999
Q ss_pred CCceeeceeeeecccC-CCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCcee--EEec-----------------
Q 004683 564 GWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT--SQLV----------------- 622 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~--~~~~----------------- 622 (737)
+++ .+..+..+ |. ..|.+++|+|+|++|++ +.|+.|++||++.+... ..+.
T Consensus 227 ~~~-----~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 227 DGV-----LVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp TCC-----EEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred CCc-----EEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 853 34444434 65 79999999999999998 58999999999765311 1110
Q ss_pred --CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 623 --PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 623 --~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
..........++|+++++.|++++.||.+++|++..+
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011223467899999999999999999999998654
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.9e-28 Score=266.30 Aligned_cols=243 Identities=15% Similarity=0.163 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCeEEEEECCC----------CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCe
Q 004683 451 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 514 (737)
Q Consensus 451 ~h~~~V~~v~~s---~~~l~s~s-dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~ 514 (737)
.|.+.|++++|+ +.++++++ +|.|++||+.+ ......+.+|...|.+++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 599999999999 35788888 89999999976 67788889999999999999998 8999999999
Q ss_pred EEEEecCCCcE-------EEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC
Q 004683 515 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 515 I~vwd~~~~~~-------~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
|++||+.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||++++.. ...+.. ...|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~~-~~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSHT-VDAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSEE-EECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--CcceeE-eecCC---CC
Confidence 99999987422 456778999999999999 778999999999999999997421 122332 23455 78
Q ss_pred eEEEEEecCCC-EEEE-EecCcEEEEeCCC-CceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCC---
Q 004683 587 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 659 (737)
Q Consensus 587 v~~l~~sp~g~-~l~~-~~dg~I~iwd~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~--- 659 (737)
|++++|+|++. .+++ +.||.|++||+++ +.++..+.. |...|++++|+|+++ ++++++.||.|+|||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999997 5666 5899999999997 566777765 688999999999985 7899999999999999872
Q ss_pred -----------eeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEECCCcEEEEecCCC
Q 004683 660 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 660 -----------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~V~iWd~~~~ 712 (737)
+.+..+. || ...+. +++|+| ++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------GH-TAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcC-------CC-CCCce--EEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 3333332 22 33344 999999 666 9999999999999999754
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.7e-28 Score=265.03 Aligned_cols=250 Identities=14% Similarity=0.176 Sum_probs=200.0
Q ss_pred CCCCeEEEEEecC-CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fspd-g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
|.+.|++++|+|+ +.+|++++.||.|++|++......... .........+. +|...|.+++|+ +
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~-----------~~~~~~~~~~~--~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP-----------SGECQPDLRLR--GHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT-----------TCCCCCSEEEE--CCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc-----------cccCCCcEEec--CCCCCeEEEEeCCCC
Confidence 8999999999997 789999999999999998753210000 00011111111 699999999999 5
Q ss_pred C-EEEEEe-CCeEEEEECCCCcE-------EEEecCCCCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCC---cEEEEE
Q 004683 464 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL 529 (737)
Q Consensus 464 ~-~l~s~s-dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~---~~~~~l 529 (737)
. +|++|+ ||.|++||+.++.. ...+.+|...|.+++|+|+ + .|++++.||.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 899999 99999999987322 4567799999999999995 5 9999999999999999987 567778
Q ss_pred cCCCcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC-EEEE-EecCc
Q 004683 530 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 606 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~-~~dg~ 606 (737)
..|...|++++|+|++. ++++|+.||.|++||+++.. .++. ...+|. ..|.+++|+|+++ ++++ +.|+.
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence 88999999999999987 68999999999999998732 2333 233455 7899999999995 4666 58999
Q ss_pred EEEEeCCC--------------CceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCC
Q 004683 607 IDVYEAPT--------------LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 607 I~iwd~~~--------------~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~ 659 (737)
|++||+.. ...+..+. .|...|++++|+|+++ ++++++.||.|+||++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999976 24444443 4688999999999999 8999999999999999764
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=289.58 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=205.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECC--CCcEEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCC
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 522 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~ 522 (737)
+|.+.|++++|+ ++++++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .+++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 799999999999 88999999 9999999997 56778888999999999999988 8 999999999999999999
Q ss_pred Cc--EEEEEcCCCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec----
Q 004683 523 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 594 (737)
Q Consensus 523 ~~--~~~~l~~~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---- 594 (737)
++ .+..+.+|...|.+++|+|+ ++.+++|+.||.|++||++++...... ...+|. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~----~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE----EEECCS---SCEEEEEECCCC--
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee----EeecCC---CceEEEEecCcccc
Confidence 87 67788889999999999999 999999999999999999885322211 233455 7899999999
Q ss_pred ---------CCCEEEE-EecCcEEEEeCCCC----ceeEEecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEEcC
Q 004683 595 ---------DQIHLLS-IHEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 595 ---------~g~~l~~-~~dg~I~iwd~~~~----~~~~~~~~~~h~~~v~~~~~sp~---~~~l~sgs~dg~I~vwd~~ 657 (737)
++..+++ +.||.|++||++++ .+...+. .|...|++++|+|+ ++++++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 4788888 58999999999877 3444554 37899999999999 9999999999999999999
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+++........ ...+ +...+. +++|+| ++.++++|+.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~~--~~~~-~~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEK-FPDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSC-CSSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCC-CCCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532211110 1112 233344 999999 89999999999999999998654
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.6e-28 Score=261.74 Aligned_cols=305 Identities=8% Similarity=0.010 Sum_probs=197.9
Q ss_pred CCCeEEEEE---ecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeee------ccCCCCCCCeEE
Q 004683 388 GGRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN------DIAADPKDSISC 458 (737)
Q Consensus 388 ~~~V~~v~f---spdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~------~~~~~h~~~V~~ 458 (737)
.....++.| +|++..+++++.|+.|.+|+................+..|.......... .....|...+..
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 345667777 45555567777789999998764333111111111112222211110000 001134444444
Q ss_pred EEEe--CCEEEEEe-CCeEEEEECCCCcEEE-----EecCCCCCeEEEEEcC--------CC-eEEEEECCCeEEEEecC
Q 004683 459 FALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 459 v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~s~--------~~-~l~sgs~dg~I~vwd~~ 521 (737)
..++ +.++++++ |++|++||+.++.... .+.+|.+.|.+++|+| |+ +||+|+.|++|++||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 4445 67899999 9999999998876543 3569999999999998 78 99999999999999999
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeee-------------------ecccCCC
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLH-------------------SFQTGLV 581 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~-------------------~~~~~~~ 581 (737)
++.++..+.+|...|.+++|+|++. ++++++.|++|++||++++......... ....+|.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 9888888888999999999999874 7999999999999999875432110000 0112344
Q ss_pred CCCCCeEEEEEe-cCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCC------------------eEEEEEcc--CC
Q 004683 582 PETTIVNHIQFH-PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP------------------ITYATYSC--DG 639 (737)
Q Consensus 582 ~~~~~v~~l~~s-p~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~------------------v~~~~~sp--~~ 639 (737)
..+.++.|+ |+|+.++++ .|+.+++||+.++.....+.. |... .....|+| ++
T Consensus 255 ---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 255 ---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp ---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred ---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 678899987 799999984 899999999987765544432 1222 22334443 44
Q ss_pred CEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 640 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 640 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
.++++|+.||.|++||+.+++....+..+ ...|. +++||| ||++||++++|| +.+|.+
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--------~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQL--------GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEEC--------SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCC--------CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 57788999999999999999887766533 33455 999999 899999998776 666654
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=264.55 Aligned_cols=246 Identities=12% Similarity=0.060 Sum_probs=192.5
Q ss_pred CCCCeEEEEEecCCCEE-EEEECCCcEEEeecc--CCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004683 387 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 462 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L-~s~s~dg~i~iWd~~--~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s- 462 (737)
|.+.|.+++|+|+|++| ++|+.||+|++|++. ++.. +..+....|...|.+++|+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------LKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------EEEEEEEECSSCEEEEEECT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------eeeeecccCCCCceEEEEcC
Confidence 66689999999999996 888899999999976 3221 1111111377899999999
Q ss_pred -CCEEEEEe-CCeEEEEECCCCcEEE----EecCCCCCeEEEEEcCC---C-eEEEEECCCeEEEEecCCCcEEEE-EcC
Q 004683 463 -GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LKG 531 (737)
Q Consensus 463 -~~~l~s~s-dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~ 531 (737)
+++|++|+ +|.|++|++.+++... .+.+|...|.+++|+|+ + +|++|+.|+.|++||+.+++.+.. +.+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 88999999 8999999998876544 67789999999999999 8 999999999999999999998877 568
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc-----CC-----------CCCCCCeEEEEEecC
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-----GL-----------VPETTIVNHIQFHPD 595 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~-----~~-----------~~~~~~v~~l~~sp~ 595 (737)
|...|.+++|+ ++++|++++.|+.|++||+++++............ .| ......|.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 99999999999999999999876543322110000 00 001157899999999
Q ss_pred CCEEEE-E-ecCcEEEEeC--CCC---ceeEEecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEEcC
Q 004683 596 QIHLLS-I-HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS 657 (737)
Q Consensus 596 g~~l~~-~-~dg~I~iwd~--~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~------dg~I~vwd~~ 657 (737)
++++++ + .++.|++|++ .++ ..+..+.. + ..|.+++|+|++.++++++. +..|.+|.+.
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999998 4 6899999999 555 56666654 3 78999999996544444443 4557888764
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=287.74 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=205.6
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 382 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 382 l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
+.+ |.+.|.+++|+|+|++|++|+.||+|+||++.+. ++.....+. +|.+.|.+++|
T Consensus 5 l~g--H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------~~~~~~~l~--~h~~~V~~l~~ 61 (753)
T 3jro_A 5 ANA--HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLT--GHEGPVWRVDW 61 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-------------------EEEEEEEEC--CCSSCEEEEEE
T ss_pred ccc--CcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-------------------CCccceecc--CCcCceEEEEe
Confidence 455 9999999999999999999999999999997632 111222222 69999999999
Q ss_pred e----CCEEEEEe-CCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCC--C-eEEEEECCCeEEEEecCCCc--EEEEE
Q 004683 462 R----GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKL 529 (737)
Q Consensus 462 s----~~~l~s~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~-~l~sgs~dg~I~vwd~~~~~--~~~~l 529 (737)
+ ++++++|+ ||.|++||+.+++ .+..+.+|...|.+++|+|+ + .+++|+.||.|++||++++. ....+
T Consensus 62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 7 67999999 9999999999887 77788899999999999999 8 99999999999999998873 34566
Q ss_pred cCCCcceEEEEEeC-------------CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC-
Q 004683 530 KGHQNRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD- 595 (737)
Q Consensus 530 ~~~~~~v~~l~~sp-------------~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~- 595 (737)
.+|...|.+++|+| ++..+++|+.||.|++||++++.... .... ...+|. ..|.+++|+|+
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~ 216 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTV 216 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCC
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCC
Confidence 78999999999999 58999999999999999998753221 2222 234565 79999999999
Q ss_pred --CCEEEE-EecCcEEEEeCCCCcee---EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 596 --QIHLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 596 --g~~l~~-~~dg~I~iwd~~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
+.++++ +.||.|++||+.++... .......|...|++++|+|+|+++++|+.||.|++|++.++
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 889988 58999999999876421 11222346889999999999999999999999999999853
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.2e-26 Score=247.22 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=212.4
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCeEEE
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 476 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~i~v 476 (737)
..+++++.|++|++||+.++ +++.... +...+.+++|+ ++++ ++++ |+.|++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---------------------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 58 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---------------------KVTATIP---VGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---------------------EEEEEEE---CSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEEEcCCCCEEEEEECCCC---------------------eEEEEee---cCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence 35778888999999887642 2222222 33458999999 7766 5665 899999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE-EEEeC
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGA 553 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l-~s~s~ 553 (737)
||+.+++.+..+..+. .+.+++|+|++ .++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+|+.+ ++++.
T Consensus 59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC
Confidence 9999999998887665 89999999999 665 5556799999999999988888754 568999999999987 67888
Q ss_pred CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCCCCCCeE
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 631 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~ 631 (737)
|+.|++||+.+++. +..+.. + ..+.+++|+|+|+.+++ + .++.|++||+++++.+..+.. ...+.
T Consensus 137 ~~~v~~~d~~~~~~-----~~~~~~-~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~ 203 (391)
T 1l0q_A 137 DKTVSVINTVTKAV-----INTVSV-G----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPS 203 (391)
T ss_dssp TTEEEEEETTTTEE-----EEEEEC-C----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEE
T ss_pred CCEEEEEECCCCcE-----EEEEec-C----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCcc
Confidence 99999999998543 332222 2 46799999999998854 4 678999999999988877753 56789
Q ss_pred EEEEccCCCEEEEEe---cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE-EEEECCCcEEEE
Q 004683 632 YATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVI 707 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs---~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l-as~s~Dg~V~iW 707 (737)
+++|+|+++++++++ .++.|++||+.+++.+..+..+ . . +.+++|+| +++++ ++++.|+.|++|
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~-~--~~~~~~s~-dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------P-D--PAGIAVTP-DGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------S-S--EEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--------C-C--ccEEEEcc-CCCEEEEEcCCCCEEEEE
Confidence 999999999999888 6899999999999988877532 2 2 34899999 77766 677899999999
Q ss_pred ecCCCceeee
Q 004683 708 EPLESEVEWG 717 (737)
Q Consensus 708 d~~~~~~~w~ 717 (737)
|+.+++....
T Consensus 272 d~~~~~~~~~ 281 (391)
T 1l0q_A 272 DTATNTITAT 281 (391)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCcEEEE
Confidence 9998876543
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.3e-26 Score=250.77 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=218.3
Q ss_pred ccccccCCCCCEEEEEecCCeEEEeecCccCCCCceeee----ecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeec
Q 004683 342 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 417 (737)
Q Consensus 342 ~~~~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~----~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~ 417 (737)
.....++|++..+++++.++.|++||+.. +..... .+.+ |...|.+++|+|+|+++++++.|+.|++||+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKK--KLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHT--TCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccc--cCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 33455889888888888899999999984 444332 1334 8899999999999999999999999999987
Q ss_pred cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE-EEe-CCeEEEEECCCCcEEEEecCCCC
Q 004683 418 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPP 493 (737)
Q Consensus 418 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~-s~s-dg~i~vwd~~~~~~~~~~~~~~~ 493 (737)
.+.. .+.... .|...+.+++|+ ++.++ +++ ++.|++||+.+++.+..+..+ .
T Consensus 199 ~~~~---------------------~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~ 254 (433)
T 3bws_A 199 KTLA---------------------YKATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G 254 (433)
T ss_dssp TTCC---------------------EEEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S
T ss_pred CCce---------------------EEEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C
Confidence 6422 222111 478899999999 77664 554 899999999999988887664 4
Q ss_pred CeEEEEEcCCC-eEEEEE--------CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 004683 494 IATYFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAV 563 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs--------~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l-~s~s~dg~I~lwdl~ 563 (737)
.+.+++|+|++ .+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 58999999999 888887 58899999999998777663 56688999999999755 666889999999999
Q ss_pred CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e---------------cCcEEEEeCCCCceeEEecCCCCC
Q 004683 564 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~---------------dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
+++. +..+.. . ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. .
T Consensus 334 ~~~~-----~~~~~~--~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~ 400 (433)
T 3bws_A 334 EKKV-----QKSIPV--F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---G 400 (433)
T ss_dssp TTEE-----EEEEEC--S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---S
T ss_pred CCcE-----EEEecC--C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---C
Confidence 8543 232322 2 578999999999988874 3 46999999999998888864 4
Q ss_pred CCeEEEEEccCCCEEEEEec-CCeEEEEEcCC
Q 004683 628 LPITYATYSCDGKCIYVSCK-SGHVKVFDTST 658 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~ 658 (737)
..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999998775 99999999864
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.8e-26 Score=254.42 Aligned_cols=331 Identities=10% Similarity=0.059 Sum_probs=243.5
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
++|++..+++++.|++|.+||... +.+... ++. +|. +.+++|||||++|++++.|++|.+||+..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~-i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~------- 209 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWA------- 209 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTT----CCEEEE-EEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTS-------
T ss_pred cCCCCEEEEEEcCCCeEEEEECCC----ceEEEE-Eec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcC-------
Confidence 778999999999999999999884 555544 442 133 89999999999999999999999998721
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCeEEEEECCCCcEEEEecCC-------
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP------- 491 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~------- 491 (737)
.++.++..+. +...+..++|+ |+++++++ +++|.+||..+++++..+..+
T Consensus 210 ------------~t~~~~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 210 ------------KEPTKVAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp ------------SSCEEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred ------------CCCcEEEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc
Confidence 1222222222 34557888886 56888887 799999999999999888642
Q ss_pred ----CCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEE--EEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 004683 492 ----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDA 562 (737)
Q Consensus 492 ----~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~--~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl 562 (737)
...+.++.++|++ .+++...++.|.+||+.+++.+. .+. +...+.++.|+|+|+++++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence 2378899999988 77788889999999998765433 343 556788999999999876554 5899999999
Q ss_pred CCCceeeceeeeecccCCCCCCCCeEEEEEecC-CCEEEEE--ecCcEEEEeCCC-------CceeEEecCCCCCCCeEE
Q 004683 563 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~--~dg~I~iwd~~~-------~~~~~~~~~~~h~~~v~~ 632 (737)
.+++.... +..+..++.+....+ ++|+ |..++++ .|++|.+||+.+ +++++++.. |...+..
T Consensus 354 ~tg~l~~~-----i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~~~~ 425 (543)
T 1nir_A 354 KDRRLSAL-----VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLF 425 (543)
T ss_dssp TTTEEEEE-----EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCC
T ss_pred CCCeEEEe-----eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCCceE
Confidence 99654332 222211111333333 5787 5555555 479999999988 889999976 4667788
Q ss_pred EEEccCCCEEEEEe-------cCCeEEEEEcCCCeeE-EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE-----
Q 004683 633 ATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL----- 699 (737)
Q Consensus 633 ~~~sp~~~~l~sgs-------~dg~I~vwd~~~~~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s----- 699 (737)
+.++|+|++|++++ .+++|.|||+.+++.. ..+...... |-..+...+..+.|+| +|+.+.++.
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--DLGEGAKRVVQPEYNK-RGDEVWFSVWNGKN 502 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--CCCSSCCEEEEEEECS-SSSEEEEEEECCTT
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc--ccCCCCCceEeccCCC-CCCEEEEEeecCCC
Confidence 99999999999987 3789999999999876 444211100 0002223456999999 788877652
Q ss_pred CCCcEEEEecCCCceeeeec
Q 004683 700 TNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 700 ~Dg~V~iWd~~~~~~~w~~~ 719 (737)
.|+.|.|||..+++.+-...
T Consensus 503 ~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCceEEEeec
Confidence 47999999999999876554
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.2e-27 Score=255.79 Aligned_cols=285 Identities=10% Similarity=0.039 Sum_probs=189.3
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCC----ceeeeecCC------------------CCCCCCeEEEEEecCCCEEE
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPD------------------NSFGGRVVRLIYSHSGDFLV 404 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~----~~~~~~l~~------------------~~h~~~V~~v~fspdg~~L~ 404 (737)
.+|++..++.++.++.|.+|+........ .......-. ..|...+....+++++.+|+
T Consensus 26 ~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 26 QSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp TSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 34555556666778899999865321110 001000000 11333334444556677899
Q ss_pred EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----------CCEEEEEe-CCe
Q 004683 405 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GGK 473 (737)
Q Consensus 405 s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----------~~~l~s~s-dg~ 473 (737)
+++.|++|++||...+.. .. ...+. ...+|.+.|++++|+ +++|++|+ |++
T Consensus 106 s~~~d~~v~lw~~~~~~~-----~~-----------~~~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETI-----IT-----------QHVLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEETTSCEEEEEEETTEE-----EE-----------EEEEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred EEeCCCcEEEEECCCCcc-----ce-----------eeeec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 999999999999775322 00 00111 122799999999995 56899999 999
Q ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEE-----------------------
Q 004683 474 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----------------------- 528 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~----------------------- 528 (737)
|++||+.++..+..+.+|...|.+++|+|++ +|++|+.|++|++||+++++....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999999988888888999999999999988 799999999999999988764332
Q ss_pred --EcCCCcceEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-------------cccCCCCCCCCeEEEEE
Q 004683 529 --LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQF 592 (737)
Q Consensus 529 --l~~~~~~v~~l~~s-p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~l~~ 592 (737)
..+|...+.++.|+ |+++.+++++.|+++++||+..+.......... ....+ .......+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 323 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGACP 323 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCEE
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEEE
Confidence 23577788899987 799999999999999999998743221110000 00001 12223344
Q ss_pred ec-CCCE-EEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 593 HP-DQIH-LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 593 sp-~g~~-l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
+| .+.. ++++ .||.|++||+.++.+...... |..+|.+++|||||++||+++++| +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 44 3444 4455 789999999999988877655 578999999999999999998776 555554
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-27 Score=249.63 Aligned_cols=236 Identities=12% Similarity=0.092 Sum_probs=188.1
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecC---------CCcEEEEEc-C
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC---------TKKTKAKLK-G 531 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~---------~~~~~~~l~-~ 531 (737)
+.++++|+ ||+|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+. +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 77899999 9999999999999888876 345677778887 9999999999999655 555455544 5
Q ss_pred CCcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEE
Q 004683 532 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 608 (737)
Q Consensus 532 ~~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~ 608 (737)
|...|.+++|+| +++++++++.||+|++||+++++. +......+. ..+.+++|+|+|.+++++ .||.|+
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVHSAKSD---VEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEECCCSS---CCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEecCCC---CceEEEEECCCCCEEEEEcCCCEEE
Confidence 778899999999 999999999999999999998543 221222333 579999999999999985 899999
Q ss_pred EEeCCCCcee-EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 609 VYEAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 609 iwd~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
+||+++++.+ ..+.. .|...|++++|+|+|.+|++++ |+.|++||+.+++....+.... +| ...+...+++|
T Consensus 196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----~~-~~~~~~~~~~~ 268 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----IP-EFKTGTVTYDI 268 (343)
T ss_dssp EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----C------CCEEEEE
T ss_pred EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----cc-cccccceEEEE
Confidence 9999999887 66654 3789999999999999999999 5599999999987655443210 00 11122136999
Q ss_pred ccCCCCEEEEEEC-CCcEEEEecCCCceeeee
Q 004683 688 HPLEPNRIALGLT-NGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 688 sp~d~~~las~s~-Dg~V~iWd~~~~~~~w~~ 718 (737)
+| ++.+|++++. |+.|+||++......|..
T Consensus 269 ~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 269 DD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CC-CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 99 8999999998 999999999888777765
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1e-26 Score=238.35 Aligned_cols=271 Identities=11% Similarity=0.020 Sum_probs=181.3
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC--CcEEEeeccCCcccccccceee
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQSNKQSLEEENVNM 431 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d--g~i~iWd~~~~~~~~g~~~~~~ 431 (737)
++++ ....|++|+.... ..--..+++.+ |..+|..+.|+||-.-|++..-- ..-.++.+
T Consensus 57 ~~~~-~~~~v~lw~~~~~--~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sl-------------- 117 (356)
T 2w18_A 57 IITA-CEDVVSLWKALDA--WQWEKLYTWHF--AEVPVLQIVPVPDVYNLVCVALGNLEIREIRAL-------------- 117 (356)
T ss_dssp EEEE-ESSEEEEEEESSS--SBEEEEEEEEC--CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEE--------------
T ss_pred EEEe-ccceEEEcccCCC--ccceeeEEEec--cCceeEEEEEcCcccceeeeeeccccccceEEE--------------
Confidence 4444 4678999998852 11112223554 77778888888765433333221 01111111
Q ss_pred eeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe---CCeEEEEEC-CCCcEEEEecCCCCCeEEEEEcC---C
Q 004683 432 ESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---Q 503 (737)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s---dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~s~---~ 503 (737)
.+.+......+.+...+|...|.. +. ++.+.+++ |+.|++|++ .+|+.+..+.+|...++.++|++ +
T Consensus 118 ---a~spd~~~~~~~l~s~g~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 118 ---FCSSDDESEKQVLLKSGNIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp ---CC------CCEEEEEEEEEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ---EECCCccccccEEEeCCCeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 111111111111111123333332 24 55566643 899999999 55888888899999999999999 6
Q ss_pred C-eEEEEECCCeEEEEecCCCcEEEEEcCCC---cceEEEEEeCCCCEE------------EEEeCCCcEEEEeCCCCce
Q 004683 504 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 504 ~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~---~~v~~l~~sp~g~~l------------~s~s~dg~I~lwdl~~~~~ 567 (737)
+ .|++|+.|++|++||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..++..
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 6 99999999999999999999999998754 367788999999876 5678899999999998654
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCC-eEEEEEccCCCEEEEE
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVS 645 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~sg 645 (737)
.....+. ++.+|. ..+.+..+ ++..++++ .|++|+|||+.+++++.++.+ |... +.+++|||||++|++|
T Consensus 273 l~v~~~~-~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 273 VGVMLYC-LPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp EEEEEEC-CCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEE
T ss_pred EEEEEee-ccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEE
Confidence 4322222 245665 34443333 47788884 899999999999999999975 4444 4568999999999999
Q ss_pred ecCCeEEEEEc
Q 004683 646 CKSGHVKVFDT 656 (737)
Q Consensus 646 s~dg~I~vwd~ 656 (737)
+.|++|+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999995
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1e-25 Score=231.07 Aligned_cols=236 Identities=11% Similarity=0.088 Sum_probs=175.8
Q ss_pred eEEEEEe--CC---EEEEEeCCeEEEEECCCC---cEEEEecCCCC-------------------------CeEEEEEcC
Q 004683 456 ISCFALR--GS---HLFSASGGKISIFSLETF---QTLATFANPPP-------------------------IATYFILLP 502 (737)
Q Consensus 456 V~~v~~s--~~---~l~s~sdg~i~vwd~~~~---~~~~~~~~~~~-------------------------~v~~~~~s~ 502 (737)
+.++-|- |- -+++++...|++|+..++ +.+.++.+|.. .|.+++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 4556665 22 477777999999999988 78888877764 356777778
Q ss_pred C----C-eEEEEEC--------------------CCeEEEEec-CCCcEEEEEcCCCcceEEEEEeC---CCCEEEEEeC
Q 004683 503 Q----D-LFAFGFD--------------------DSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA 553 (737)
Q Consensus 503 ~----~-~l~sgs~--------------------dg~I~vwd~-~~~~~~~~l~~~~~~v~~l~~sp---~g~~l~s~s~ 553 (737)
+ + .+++++. |+.|++|++ .+|+.+..+.+|...+..++|+| ++..|++++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 8 6 6666553 778888888 44777777778888888888888 6789999999
Q ss_pred CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE------------E-EecCcEEEEeCCCCceeEE
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~------------~-~~dg~I~iwd~~~~~~~~~ 620 (737)
|++|++||+++++ .++++..++. +...+.+++|+|+|++++ + +.|++|++||..+++.+..
T Consensus 202 D~TIkIWDl~TGk-----~l~tL~g~~~-~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 202 MNNIVIWNLKTGQ-----LLKKMHIDDS-YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp TSEEEEEETTTCC-----EEEEEECCC----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCc-----EEEEEcCCCc-ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 9999999999954 3443433321 114678889999998874 3 3678999999999988766
Q ss_pred ec---CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 621 LV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 621 ~~---~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
+. +.+|...+.+..++ +.++++|+.|++|+|||+.+++.+..+.+| +...+. .++|+| |+++|++
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH-------~~~vvs--~vafSP-DG~~LaS 343 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV-------SDQHWS--FVKWSG-TDSHLLA 343 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC---------CCCC--EEEECS-SSSEEEE
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC-------CCCeEE--EEEECC-CCCEEEE
Confidence 52 23455555544444 889999999999999999999999998633 333232 689999 8999999
Q ss_pred EECCCcEEEEec
Q 004683 698 GLTNGRVHVIEP 709 (737)
Q Consensus 698 ~s~Dg~V~iWd~ 709 (737)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.4e-24 Score=231.96 Aligned_cols=288 Identities=10% Similarity=-0.018 Sum_probs=213.6
Q ss_pred ccCCCCC-EEEEEe----cCC----eEEEeec--CccCCCCcee-eeecCCCCCCCCeEEEEEec--------------C
Q 004683 346 TSLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECR-TLLLPDNSFGGRVVRLIYSH--------------S 399 (737)
Q Consensus 346 ~~spdg~-~la~~s----~dg----~v~iW~~--~~~~~~~~~~-~~~l~~~~h~~~V~~v~fsp--------------d 399 (737)
.|.+.|. .+++|+ .+| ++++||+ .. +.+. ...+.+ |...+..+++++ .
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP----GTVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST----TCEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC----CCEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3677775 555775 467 8999999 64 3332 233555 788888888875 2
Q ss_pred CCEEEEEECC------CcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-
Q 004683 400 GDFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 470 (737)
Q Consensus 400 g~~L~s~s~d------g~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s- 470 (737)
+..++.++.+ ++|++||+..... ..+. +|...|.+++|+ |++|++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------~~l~--~~~~~v~~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------FVVH--RSPQPLMSPAWSPDGSKLAYVTF 198 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------EEEE--EESSCEEEEEECTTSSEEEEEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------EEEe--CCCCcceeeEEcCCCCEEEEEEe
Confidence 6677777764 6888888653211 1111 478899999999 88999988
Q ss_pred CC---eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCC--eEEEEecCCCcEEEEEcCCCcceEEEEEeC
Q 004683 471 GG---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSL 543 (737)
Q Consensus 471 dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp 543 (737)
++ .|++||+.+++.. .+..|...+.+++|+||| .|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC
Confidence 64 9999999998875 466778889999999999 777 666665 499999998876 56777888999999999
Q ss_pred CCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec---CcEEEEeCCCCc
Q 004683 544 SLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE---GQIDVYEAPTLN 616 (737)
Q Consensus 544 ~g~~l~s~s~-dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d---g~I~iwd~~~~~ 616 (737)
||+.|++++. ++ .|++||+.+++. ..+. .+. ..+.+++|+|+|++|+++ .+ ..|++||+.+++
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~~------~~l~-~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGAP------QRIT-WEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCC------EECC-CSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCCE------EEEe-cCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 9999998886 44 677889887432 1121 222 578899999999999874 33 589999999887
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
.. .+.. + ..+.+++|+|+|++|++++.++ .|++||+.++. ...+..+ .+.+. +++|+|.
T Consensus 347 ~~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~--------~~~v~--~~~~~~~ 408 (415)
T 2hqs_A 347 VQ-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPAT--------DGQVK--FPAWSPY 408 (415)
T ss_dssp EE-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCS--------SSEEE--EEEECCC
T ss_pred EE-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCC--------CCCCc--CCccccc
Confidence 64 3433 2 3799999999999999888876 89999998544 4555432 33454 9999993
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=6.5e-24 Score=249.42 Aligned_cols=320 Identities=11% Similarity=0.080 Sum_probs=226.7
Q ss_pred ccccCCCCCEEEEEec-CC-----eEEEeecCccCCCCceeeeecCCCCCC----------------------CCeEEEE
Q 004683 344 ESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRLI 395 (737)
Q Consensus 344 ~~~~spdg~~la~~s~-dg-----~v~iW~~~~~~~~~~~~~~~l~~~~h~----------------------~~V~~v~ 395 (737)
...|+|||+++++++. |+ +|++||+.+ +..... +..+.+. ..|.+++
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEE-ECGGGTC--------------------CCEESCCCE
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEc-cchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 3459999999999998 88 899999985 444433 2221122 3488999
Q ss_pred EecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCe
Q 004683 396 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGK 473 (737)
Q Consensus 396 fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~ 473 (737)
|||||++|++++. +.|.+||+.++..+ .... +. .|...+.+++|+ |++|++++++.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~------------------~~~~-l~--~~~~~~~~~~~SPDG~~la~~~~~~ 173 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKA------------------AVRQ-LT--HGEGFATDAKLSPKGGFVSFIRGRN 173 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTT------------------SCCB-CC--CSSSCEEEEEECTTSSEEEEEETTE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcc------------------eEEE-cc--cCCcccccccCCCCCCEEEEEeCCc
Confidence 9999999999987 89988887643100 1111 11 467789999999 89999999889
Q ss_pred EEEEECCCCcEEEEecCCCCC----------------eEEEEEcCCC-eEEEEECCC-----------------------
Q 004683 474 ISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS----------------------- 513 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~s~~~-~l~sgs~dg----------------------- 513 (737)
|++||+.+++.......+... +.+++|+||| .|++++.|+
T Consensus 174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 999999988776655444332 4779999999 888887765
Q ss_pred ----------eEEEEecCC-CcEEEEEc--CCCcceEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCceeeceeeee
Q 004683 514 ----------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 514 ----------~I~vwd~~~-~~~~~~l~--~~~~~v~~l~~sp~g~~l~s~s~-----dg~I~lwdl~~~~~~~~~~~~~ 575 (737)
.|++||+.+ ++...... .|...+.+++| |||+.|++++. +..|++||+.+++....
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~----- 327 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL----- 327 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE-----
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE-----
Confidence 889999998 87655443 37788999999 99999987764 56799999998653221
Q ss_pred cccCCCCC-CCCeEEEEEecCCCEEEEE-ecCcEEEEeCC-CCceeEEecCCCCCCCeEEE-EEccCCCEEEE-EecCC-
Q 004683 576 FQTGLVPE-TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYV-SCKSG- 649 (737)
Q Consensus 576 ~~~~~~~~-~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s-gs~dg- 649 (737)
...+... ...+..++|+|+|++++++ .+|.++||.+. ++. ...+.. +...+.++ .|+|+|+.|+. ++.++
T Consensus 328 -~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 328 -AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp -EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred -EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 1111100 0135688999999977775 67777777654 344 555544 46678887 59999997764 55555
Q ss_pred -eEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC----CcEEEEecCCC
Q 004683 650 -HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLES 712 (737)
Q Consensus 650 -~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~V~iWd~~~~ 712 (737)
.++||++.. +.....+.. ...+. .++|+| |+++|+....+ +.+.+|+...+
T Consensus 404 ~~~~l~~~~~~g~~~~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 404 RESQIYAVPLQGGQPQRLSK---------APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TCBEEEEEETTCCCCEECCC---------SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCCeeeccc---------CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 899999864 544444432 22344 899999 78887765443 46889987554
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.9e-23 Score=252.93 Aligned_cols=331 Identities=13% Similarity=0.069 Sum_probs=237.9
Q ss_pred cccccCCCCCEEEEEecC----C--eEEEeecCccCCCCceeeeecCCCCCCCCe-------EEEEEecCCCEEEEEECC
Q 004683 343 RESTSLPDADSAVCAKSL----E--KSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT 409 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~d----g--~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V-------~~v~fspdg~~L~s~s~d 409 (737)
....|||||++||+++.+ + .|.+|++.+ +.... +.+ |...+ ..++|||||+.+++++.+
T Consensus 56 ~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~----g~~~~--lt~--~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~ 127 (1045)
T 1k32_A 56 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN----GEIKR--ITY--FSGKSTGRRMFTDVAGFDPDGNLIISTDAM 127 (1045)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT----TEEEE--CCC--CCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred cCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC----CCeEE--ccc--CCCcccccccccccccCCCCCEEEEEECCc
Confidence 345599999999998754 3 688999874 44433 555 77777 999999999977777654
Q ss_pred ------CcEEEeeccCCcc---ccccc---------ce----------------eeeeEEeecC-CCeeeeeccCCCCCC
Q 004683 410 ------ATHKLWKWQSNKQ---SLEEE---------NV----------------NMESQLYQPS-SKLVMTNDIAADPKD 454 (737)
Q Consensus 410 ------g~i~iWd~~~~~~---~~g~~---------~~----------------~~~~~l~~~~-~~~~~~~~~~~~h~~ 454 (737)
..|.+|++.++.. ..+.. .. .....+|... .+..... .+|..
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~ 204 (1045)
T 1k32_A 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMST 204 (1045)
T ss_dssp SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSS
T ss_pred CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCC
Confidence 3577777765442 11100 00 0012344321 2333332 26999
Q ss_pred CeEEEEEe-CCEEEEEe-CCeEEEEECCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 455 SISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 455 ~V~~v~~s-~~~l~s~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
.+.++.|+ +.++++++ ++.+.+|.+.. +.....+..|. .+...+|+|+| .++++. ++.|++||+..+. +..+.
T Consensus 205 ~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~ 281 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIE 281 (1045)
T ss_dssp CCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECC
T ss_pred cccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeec
Confidence 99999999 64455555 78888997653 44555665555 45677999999 888874 8999999995544 44555
Q ss_pred C-----------CCcceEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCC-CeEEEEEecCCC
Q 004683 531 G-----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQI 597 (737)
Q Consensus 531 ~-----------~~~~v~~l~~s-p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~g~ 597 (737)
+ |...+.+++|+ |+|+.+++++ ++.|.+|++.++.. .. +. .+. . .+..++|+ +|+
T Consensus 282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-----~~-~~-~~~---~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-----LK-VP-EPL---RIRYVRRGGD-TKV 349 (1045)
T ss_dssp CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-----EE-CS-CCS---CEEEEEECSS-SEE
T ss_pred cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-----EE-cc-CCC---cceEEeeeEc-CCC
Confidence 4 33468999999 9999999888 88999999987432 11 22 222 4 78999999 999
Q ss_pred EEEE-EecCcEE-EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCC
Q 004683 598 HLLS-IHEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 675 (737)
Q Consensus 598 ~l~~-~~dg~I~-iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~ 675 (737)
.++. +.++.+. +||+.+++.. .+. .|...+..++|||||++|++++.++.|++||+.+++.......+
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~------- 419 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR------- 419 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-------
T ss_pred eEEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-------
Confidence 8887 4667788 8999877654 343 35788999999999999999999999999999999877766432
Q ss_pred ccCceeeEEEEEccCCCCEEEEEECCC----------cEEEEecCCCc
Q 004683 676 ISLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESE 713 (737)
Q Consensus 676 ~~~~v~~~~v~~sp~d~~~las~s~Dg----------~V~iWd~~~~~ 713 (737)
...+. +++|+| |+++|++++.++ .|++||+.+++
T Consensus 420 -~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 420 -EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp -SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred -CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 33344 899999 899998887654 89999998875
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=9.3e-24 Score=230.09 Aligned_cols=277 Identities=12% Similarity=0.039 Sum_probs=202.2
Q ss_pred CCCeEEEEEecCCC-EEEEEE----CCC----cEEEeec--cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe
Q 004683 388 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 456 (737)
Q Consensus 388 ~~~V~~v~fspdg~-~L~s~s----~dg----~i~iWd~--~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V 456 (737)
...|....|++.|. ++++|+ .|| ++++||+ .+++. .... .+. +|...+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~-----~~~~--------------~~~--~~~~~~ 120 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV-----LAQN--------------SYK--VNKQWL 120 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE-----EEEE--------------EEE--ECGGGH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE-----Eeee--------------EEE--cChhHH
Confidence 45788889999885 555776 467 8888887 54322 1000 000 243333
Q ss_pred EEEEEe----------------CCEEEEEe-C------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC
Q 004683 457 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD 512 (737)
Q Consensus 457 ~~v~~s----------------~~~l~s~s-d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d 512 (737)
..++++ +..++.++ + +.|++||+. +...+.+.+|...+.+++|+|+| .|++++.+
T Consensus 121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence 333322 44555555 3 699999997 55567777888999999999999 99999987
Q ss_pred C---eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEE-EEeCCCc--EEEEeCCCCceeeceeeeecccCCCCCCCC
Q 004683 513 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 513 g---~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~-s~s~dg~--I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
+ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++. |++||+.+++. ..+. .|. ..
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~~l~-~~~---~~ 268 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------RQVT-DGR---SN 268 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------EECC-CCS---SC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------EeCc-CCC---Cc
Confidence 5 9999999998875 4666888999999999999888 6666655 99999988432 2122 333 67
Q ss_pred eEEEEEecCCCEEEEE-e-cC--cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEEcCCC
Q 004683 587 VNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 659 (737)
Q Consensus 587 v~~l~~sp~g~~l~~~-~-dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d---g~I~vwd~~~~ 659 (737)
+.+++|+|+|++|+++ . ++ .|++||+.+++.. .+.. +...+.+++|+|+|++|++++.+ +.|++||+.++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9999999999998874 3 34 6888899887643 3332 45678899999999999988764 58999999998
Q ss_pred eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC---cEEEEecCCCc
Q 004683 660 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE 713 (737)
Q Consensus 660 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg---~V~iWd~~~~~ 713 (737)
+.. .+.. + . .+.+++|+| |+.+|++++.++ .|++||+..+.
T Consensus 346 ~~~-~l~~-------~-~---~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 346 GVQ-VLSS-------T-F---LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEE-ECCC-------S-S---SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CEE-EecC-------C-C---CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 763 3321 1 1 344899999 899999888777 79999997543
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=4.7e-22 Score=209.80 Aligned_cols=276 Identities=13% Similarity=0.163 Sum_probs=190.3
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC-CcEEEeeccCCcccccccceeee
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNME 432 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d-g~i~iWd~~~~~~~~g~~~~~~~ 432 (737)
+++++.|+.|++|+++. .+......... |...+.+++|+|+|++|++++.+ +.|.+|++...
T Consensus 8 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNH---EGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEGGGTEEEEEEECT---TSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEeCCCCCeEEEEEECC---CCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 34447899999999864 23222211112 67789999999999999999886 89999997621
Q ss_pred eEEeecCCCee--eeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECC---CCcEEEEecCCCCCeEEEEEcCC
Q 004683 433 SQLYQPSSKLV--MTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE---TFQTLATFANPPPIATYFILLPQ 503 (737)
Q Consensus 433 ~~l~~~~~~~~--~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~ 503 (737)
++.. +.... .+ ..+.+++|+ ++++++++ ++.|.+||+. +++....+..+ ..+.+++|+|+
T Consensus 71 -------~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d 139 (343)
T 1ri6_A 71 -------DGALTFAAESA--LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPD 139 (343)
T ss_dssp -------TCCEEEEEEEE--CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTT
T ss_pred -------CCceeeccccc--cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCC
Confidence 1111 11111 12 367889999 77776665 7899999994 34455555443 35889999999
Q ss_pred C-eEEEEE-CCCeEEEEecCC-CcEEE----EEcC-CCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCC--Cceeecee
Q 004683 504 D-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSKF 572 (737)
Q Consensus 504 ~-~l~sgs-~dg~I~vwd~~~-~~~~~----~l~~-~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~--~~~~~~~~ 572 (737)
+ .+++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|+|+++++++ .++.|.+||+.. +.......
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 9 777777 899999999987 65432 2222 345788999999999776555 789999999954 33222222
Q ss_pred eeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCC--CC--ceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~--~~--~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+..+..++. +...+..++|+|+|+++++ + .++.|.+||+. ++ +.+..+.. ...+.+++|+|+|++|++++
T Consensus 220 ~~~~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 220 LDMMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EECSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEEC
T ss_pred ccccCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEec
Confidence 222222211 0146778999999998886 4 67999999998 33 34444433 23388999999999998887
Q ss_pred -cCCeEEEEE--cCCCee
Q 004683 647 -KSGHVKVFD--TSTLEL 661 (737)
Q Consensus 647 -~dg~I~vwd--~~~~~~ 661 (737)
.++.|.+|+ ..+++.
T Consensus 296 ~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTCEEEEEEEETTTTEE
T ss_pred CCCCeEEEEEEcCCCcee
Confidence 579999995 456654
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3e-23 Score=243.03 Aligned_cols=322 Identities=13% Similarity=0.071 Sum_probs=217.6
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCC---CeEEEEEecCCCEEEEEECC---------CcE
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------ATH 412 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~---~V~~v~fspdg~~L~s~s~d---------g~i 412 (737)
..|+|||+++++ +.||+|++||+.+ +.+... +.+ |.. .|.+++|||||++|++++.+ +.+
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~-~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVET----NTSTVL-IEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEE-ECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEE-ecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 349999997776 7899999999985 444443 444 443 49999999999999999875 455
Q ss_pred EEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecC
Q 004683 413 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN 490 (737)
Q Consensus 413 ~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~ 490 (737)
.+||+. ++.........+|...+.+++|| |+.|++++++.|++||+.+++..+....
T Consensus 94 ~~~d~~---------------------~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 94 VLSKIP---------------------HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEESS---------------------SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred EEEECC---------------------CCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence 566554 44332211112455668899999 8899999999999999999888776665
Q ss_pred CCCCe------------------EEEEEcCCC-eEEEEECCC----------------------------------eEEE
Q 004683 491 PPPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SILV 517 (737)
Q Consensus 491 ~~~~v------------------~~~~~s~~~-~l~sgs~dg----------------------------------~I~v 517 (737)
+...+ .+++|+||| .|++++.|+ .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 44333 789999999 888887553 7999
Q ss_pred EecCCCcEEEEEcCC------CcceEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeeceeeeecccCCCCCCCCe
Q 004683 518 HCPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 587 (737)
Q Consensus 518 wd~~~~~~~~~l~~~------~~~v~~l~~sp~g~~l~s~s~----dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v 587 (737)
||+.+++....+..+ ...+.+++|+|||+++++.+. +..|++||+.+++.... +...+. ..+
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~-----~~~~~~---~~~ 304 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK-----HEDESE---AWL 304 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE-----EEEECS---SCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE-----EEeccC---CEE
Confidence 999988865666654 567899999999998877653 35799999988643221 111111 222
Q ss_pred ----EEEEEecCCCEEEE--E-ecC------cEEEEe-CCCCc--eeEEecCCCCCCCeEE-EEEccCCCEEEEEecC--
Q 004683 588 ----NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLN--HTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-- 648 (737)
Q Consensus 588 ----~~l~~sp~g~~l~~--~-~dg------~I~iwd-~~~~~--~~~~~~~~~h~~~v~~-~~~sp~~~~l~sgs~d-- 648 (737)
..++|+|+|+.|+. + .++ .|++|| ..++. +...+.. +...+.. ++|||||+.|+..+.+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~ 382 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDL 382 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence 37899999997764 3 455 577888 44444 1444432 2344554 6999999999866554
Q ss_pred -CeEEEEEcCCCe--eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC-CC--cEEEEecCCCc
Q 004683 649 -GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLESE 713 (737)
Q Consensus 649 -g~I~vwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg--~V~iWd~~~~~ 713 (737)
+.+++|++.... ....+... .++ ...+. .++|+| |+++|+.... .+ .+.+++..++.
T Consensus 383 ~~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 383 PRRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp TTCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred CcceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCCC
Confidence 789999987532 22222110 001 22244 899999 7887776433 22 33445554444
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.9e-21 Score=203.23 Aligned_cols=287 Identities=12% Similarity=0.042 Sum_probs=199.1
Q ss_pred EEEecCCCE-EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004683 394 LIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 470 (737)
Q Consensus 394 v~fspdg~~-L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 470 (737)
..|.+++.+ +++++.+++|.+||..++ ++..... .+...+ +++|+ |+++++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~---------------------~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL---------------------EILNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC---------------------CEEEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc---------------------ceeeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 356666665 666777899998886643 2222211 244555 89999 77666665
Q ss_pred --CCeEEEEECCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEECCC---eEEEEecCCCcEEEEEcCCCcceEEEEEeC
Q 004683 471 --GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSL 543 (737)
Q Consensus 471 --dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg---~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp 543 (737)
++.|.+||+.+++. ...+..+.....+++|+|+| +++++..++ .|.+||+.+++.+..+.. .....+++|+|
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 68999999999987 77776666666559999999 787555553 899999999998887764 34568999999
Q ss_pred CCCEEEE-EeCCCc-EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCce--
Q 004683 544 SLNVLVS-SGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-- 617 (737)
Q Consensus 544 ~g~~l~s-~s~dg~-I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~-- 617 (737)
+|+++++ ...++. |.+|++.............+..+ ..+..++|+|+|+++++ + .++.|.+||+.+++.
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9986554 455688 99999986332211111212222 46889999999997776 4 578999999999888
Q ss_pred -eEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCee--EEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 618 -TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 618 -~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
+..+.. ...+.+++|+|+|+++++++ .++.|.+||..+++. +..+....... +..... ...++|+| |++
T Consensus 213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~sp-dg~ 285 (331)
T 3u4y_A 213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID-PRPLFG--ANQMALNK-TET 285 (331)
T ss_dssp EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC-CGGGTT--CCCEEECT-TSS
T ss_pred eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC-CCCccc--ccceEECC-CCC
Confidence 777654 46678899999999877665 478899999999987 33332210000 100111 13689999 788
Q ss_pred EEEEEE-CCCcEEEEecCCCceeee
Q 004683 694 RIALGL-TNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 694 ~las~s-~Dg~V~iWd~~~~~~~w~ 717 (737)
+|++++ .++.|.+||+......+.
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EEEEecCCCCcEEEEEecCCcccce
Confidence 775554 567999999988765543
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.6e-21 Score=204.09 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=204.0
Q ss_pred CCCeEEEEEecCCCEEEEEEC-------CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~-------dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
...+..++|+|+|+++++++. ++.|.+||..+ ++...... ....+..++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---------------------~~~~~~~~---~~~~~~~~~ 95 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---------------------LEVTQAIH---NDLKPFGAT 95 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---------------------CCEEEEEE---ESSCCCSEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---------------------CeEEEEEe---cCCCcceEE
Confidence 457889999999999988885 45677776553 33222221 223456788
Q ss_pred Ee--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCC---------eEEEEEcCCC-eEEEEE--CCCeEEEEecCCCc
Q 004683 461 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTKK 524 (737)
Q Consensus 461 ~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~s~~~-~l~sgs--~dg~I~vwd~~~~~ 524 (737)
|+ |+++++++ ++.|.+||..+++.+..+..+... +.+++|+|++ .+++++ .++.|.+||..+++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 88 77665555 699999999999998888754422 6889999999 666665 47899999999999
Q ss_pred EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--
Q 004683 525 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 602 (737)
Q Consensus 525 ~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-- 602 (737)
.+..+..+...+.+++|+|+|+.+++++.++.|.+||+.+++........ ..++. ..+..++|+|+|++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITDS 250 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEES
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEeC
Confidence 98888766666889999999999999999999999999986543322211 11222 467889999999988774
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEecccccCCCCccCcee
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 681 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 681 (737)
.++.|.+||..+++.+..+.... ..+++|+|+|+++++++ .++.|.+||..+++.+..+... ..
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~ 315 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-----------TH 315 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-----------SE
T ss_pred CCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-----------CC
Confidence 45899999999999888776421 25699999999776655 6899999999999988877531 13
Q ss_pred eEEEEEccCCCCEEEEEECCC
Q 004683 682 PLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg 702 (737)
+.+++|+| |+++++++..++
T Consensus 316 ~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 316 PNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECT-TSCEEEEEEECC
T ss_pred CCeEEEcC-CCCEEEEEEccc
Confidence 45899999 788666665553
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.1e-21 Score=220.60 Aligned_cols=275 Identities=11% Similarity=0.070 Sum_probs=210.7
Q ss_pred EecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CC
Q 004683 396 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG 472 (737)
Q Consensus 396 fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg 472 (737)
|+|++..+++++.|++|.+||..++ +++..+.. ++. +.+++|+ |+++++++ |+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~---------------------~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d~ 200 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK---------------------KIVKVIDT-GYA--VHISRMSASGRYLLVIGRDA 200 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC---------------------CEEEEEEC-STT--EEEEEECTTSCEEEEEETTS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc---------------------eEEEEEec-Ccc--cceEEECCCCCEEEEECCCC
Confidence 8899999999999999998886632 22222221 233 8899999 89999999 99
Q ss_pred eEEEEEC--CCCcEEEEecCCCCCeEEEEEcC----CC-eEEEEE-CCCeEEEEecCCCcEEEEEcCC----------C-
Q 004683 473 KISIFSL--ETFQTLATFANPPPIATYFILLP----QD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH----------Q- 533 (737)
Q Consensus 473 ~i~vwd~--~~~~~~~~~~~~~~~v~~~~~s~----~~-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~----------~- 533 (737)
+|.+||+ .+++.+..+.. ...+..++|+| +| ++++++ .+++|.+||..+++++..+..+ .
T Consensus 201 ~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 201 RIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp EEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred eEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccC
Confidence 9999999 88988888874 45678999999 99 888777 4899999999999998887642 2
Q ss_pred cceEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEE
Q 004683 534 NRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY 610 (737)
Q Consensus 534 ~~v~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iw 610 (737)
..+.++.++|++.. +++...++.|.+||+.+.+... +..+..+ ..+..++|+|+|+++++ + .+++|.+|
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---~~~i~~~-----~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAA-----PFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---EEEEECC-----SSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---eEEeccC-----cCccCceECCCCCEEEEEecCCCeEEEE
Confidence 26889999997765 5666778999999998754322 1122222 46788999999998876 4 57899999
Q ss_pred eCCCCceeEEecCC--CCCCCeEEEEEccC-CCEEEEEe-cCCeEEEEEcCC-------CeeEEEEecccccCCCCccCc
Q 004683 611 EAPTLNHTSQLVPD--KMDLPITYATYSCD-GKCIYVSC-KSGHVKVFDTST-------LELRCQINLTAYAQPGTISLE 679 (737)
Q Consensus 611 d~~~~~~~~~~~~~--~h~~~v~~~~~sp~-~~~l~sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~~~g~~~~~ 679 (737)
|..+++++..+... .|.+....+ ++|+ +..+++++ .|++|.+||+.+ ++.+..+..+ ...
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--------g~~ 422 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--------GGG 422 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--------CSC
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--------CCC
Confidence 99999998887642 133333333 4677 56666665 589999999998 8888888754 222
Q ss_pred eeeEEEEEccCCCCEEEEEE-------CCCcEEEEecCCCcee
Q 004683 680 LYPLVIAAHPLEPNRIALGL-------TNGRVHVIEPLESEVE 715 (737)
Q Consensus 680 v~~~~v~~sp~d~~~las~s-------~Dg~V~iWd~~~~~~~ 715 (737)
.. .+++|| ++++|++++ .+++|.|||+.+++..
T Consensus 423 ~~--~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 423 SL--FIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CC--CEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred ce--EEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 33 799999 899999987 2779999999988755
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=9.5e-22 Score=229.66 Aligned_cols=313 Identities=13% Similarity=0.080 Sum_probs=215.5
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCce--eeeecCC--------------CCCCCCeEEEEEecCCCEEEEEECCC
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPD--------------NSFGGRVVRLIYSHSGDFLVALTQTA 410 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~--~~~~l~~--------------~~h~~~V~~v~fspdg~~L~s~s~dg 410 (737)
|+ |+.+++++.++ | +||+.++ .. ..+ +.. ..+...|.+++|||| ++++.+. ++
T Consensus 33 w~--g~~~~~~~~~~-i-~~d~~tg----~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 33 WM--GDNYVFIEGDD-L-VFNKANG----KSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp EE--TTEEEEEETTE-E-EEEC-----------CEE-EEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred Cc--CCeEEEEeCCc-E-EEECCCC----cEeeEEe-echhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 66 67778888787 8 9999853 22 221 110 001257999999999 6666554 58
Q ss_pred cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCC-----Cc
Q 004683 411 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----FQ 483 (737)
Q Consensus 411 ~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~-----~~ 483 (737)
++++||+.++ ...... .+...+.+++|+ |++|+++.++.|++||+.+ ++
T Consensus 102 ~i~~~d~~~~---------------------~~~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 102 GLVGFDMLAR---------------------KVTYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp EEEEEETTTT---------------------EEEEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCC
T ss_pred EEEEEECCCC---------------------ceEEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCC
Confidence 9988886632 222211 355667889999 8899997799999999998 77
Q ss_pred EEEEecCCCCC--------------eEEEEEcCCC-eEEEEE---------------------------------CCCeE
Q 004683 484 TLATFANPPPI--------------ATYFILLPQD-LFAFGF---------------------------------DDSSI 515 (737)
Q Consensus 484 ~~~~~~~~~~~--------------v~~~~~s~~~-~l~sgs---------------------------------~dg~I 515 (737)
..+....+... +.+++|+||| .|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 66554444333 4789999999 888887 44689
Q ss_pred EEEecCCCcEEEEEc--CCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeecccCCCCCCCCeE
Q 004683 516 LVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 588 (737)
Q Consensus 516 ~vwd~~~~~~~~~l~--~~~~~v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~ 588 (737)
++||+.+++...... .|...+.+++|+|||+.+++++.++ .|++||+.+++... .+. ...+......+.
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~--~~~~~~~~~~~~ 313 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLF--VETDKHYVEPLH 313 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEE--EEECSSCCCCCS
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEE--EccCCCeECccC
Confidence 999999887655442 4667899999999999999988776 89999999862211 111 111110001246
Q ss_pred EEEEec--CCCEEEEE-ecCcEEEEeCC-CCceeEEecCCCCCCCeEE-EEEccCCCEEEEEec-CC----eEEEEEcCC
Q 004683 589 HIQFHP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCK-SG----HVKVFDTST 658 (737)
Q Consensus 589 ~l~~sp--~g~~l~~~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~-~~~sp~~~~l~sgs~-dg----~I~vwd~~~ 658 (737)
.++|+| +|++++++ .++.++||++. ++..+..+.. +...+.+ ++|+|+|+.|+.++. ++ .|+.||..+
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 789999 99988875 77888888876 5666666654 4566776 799999998876554 44 677888887
Q ss_pred CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC----CcEEEEecCCCc
Q 004683 659 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 713 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~V~iWd~~~~~ 713 (737)
++. ..+.. ...+. +++|+| |+++++.+..+ +.|++||+.+++
T Consensus 392 ~~~-~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 392 GKT-KDLTP---------ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCC-EESCC---------SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCc-eeccC---------CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 763 33321 22344 899999 78887766433 569999998876
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=4.7e-22 Score=233.54 Aligned_cols=291 Identities=10% Similarity=0.071 Sum_probs=205.4
Q ss_pred CCCeEEEEEecCCCEEEEEEC-CC-----cEEEeeccCCcccccccceeeeeEEeecC------------CCeeeeeccC
Q 004683 388 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLEEENVNMESQLYQPS------------SKLVMTNDIA 449 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~-dg-----~i~iWd~~~~~~~~g~~~~~~~~~l~~~~------------~~~~~~~~~~ 449 (737)
...|.+++|||||++|++++. |+ +|.+||+.++.. . .+.... ...... ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-----R-----LLVDSKVVLPGTETLSDEEKARRE-RQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-----E-----EEECGGGTC-------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-----e-----Eccchhhcccccccccchhhhhhh-hhh
Confidence 467999999999999999998 88 899998875432 0 011100 000000 000
Q ss_pred CCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc
Q 004683 450 ADPKDSISCFALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 450 ~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~ 524 (737)
......|.+++|+ |++|++++++.|++||+.++. ....+..+...+.+++|+||| .|++++ ++.|++||+.+++
T Consensus 105 ~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 105 IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp --CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 0001347789999 889999999999999999873 445566777889999999999 888887 5699999999887
Q ss_pred EEEEEcCCCcc----------------eEEEEEeCCCCEEEEEeCCC---------------------------------
Q 004683 525 TKAKLKGHQNR----------------ITCLAYSLSLNVLVSSGADA--------------------------------- 555 (737)
Q Consensus 525 ~~~~l~~~~~~----------------v~~l~~sp~g~~l~s~s~dg--------------------------------- 555 (737)
.......+... +.+++|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 76554443332 47899999999999988765
Q ss_pred cEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e-----cCcEEEEeCCCCceeEEecCCCCCC
Q 004683 556 QLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-----EGQIDVYEAPTLNHTSQLVPDKMDL 628 (737)
Q Consensus 556 ~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~-----dg~I~iwd~~~~~~~~~~~~~~h~~ 628 (737)
.|++||+.+ ++... +. ....+. ..+..++| |||++|+++ . +..|++||+.+++....+..+. ..
T Consensus 264 ~l~~~d~~~~~~~~~---~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~ 334 (741)
T 2ecf_A 264 KLGVISPAEQAQTQW---ID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PT 334 (741)
T ss_dssp EEEEECSSTTCCCEE---EC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SS
T ss_pred EEEEEECCCCCceEE---ec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CC
Confidence 788999887 64321 11 111233 67899999 999999873 3 4679999999998776654321 22
Q ss_pred ---CeEEEEEccCCCEEEEEecCCeEEEEEcC-CCeeEEEEecccccCCCCccCceeeEEE-EEccCCCCEEE-EEECCC
Q 004683 629 ---PITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG 702 (737)
Q Consensus 629 ---~v~~~~~sp~~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~la-s~s~Dg 702 (737)
.+.+++|+|||+++++++.||.++||.+. ++. ...+..+ ...+. .+ .|+| +++.|+ +++.++
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--------~~~v~--~~~~~s~-dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--------NWSVD--ELLAVDE-KAGLAYFRAGIES 402 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--------SSCEE--EEEEEET-TTTEEEEEECSSC
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--------ceEEE--eEeEEeC-CCCEEEEEEeCCC
Confidence 45689999999999999999988888775 344 4444321 22233 55 5999 777665 555555
Q ss_pred --cEEEEecCC
Q 004683 703 --RVHVIEPLE 711 (737)
Q Consensus 703 --~V~iWd~~~ 711 (737)
.++||++..
T Consensus 403 ~~~~~l~~~~~ 413 (741)
T 2ecf_A 403 ARESQIYAVPL 413 (741)
T ss_dssp TTCBEEEEEET
T ss_pred CceEEEEEEEc
Confidence 899999864
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.4e-21 Score=235.99 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=182.5
Q ss_pred CeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEecC-----------CCCCeEEEEEc-CCC-eEEEEECCCeEEEEe
Q 004683 455 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----------PPPIATYFILL-PQD-LFAFGFDDSSILVHC 519 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s-~~~-~l~sgs~dg~I~vwd 519 (737)
.+..++|+ |++++++.++.|++||+... .+..+.+ |...+.+++|+ ||| .+++++ ++.|++|+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 45667888 88888888999999999544 3445554 23468899999 999 888887 88999999
Q ss_pred cCCCcEEEEEcCCCc-ceEEEEEeCCCCEEEEEeCCCcEE-EEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 520 PCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLC-VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 520 ~~~~~~~~~l~~~~~-~v~~l~~sp~g~~l~s~s~dg~I~-lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
+.++... .+..|.. .+.+++|+ +|+.+++++.++.+. +||+.++.. ..+. ++. ..+..++|+|+|+
T Consensus 324 ~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~------~~l~-~~~---~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 324 VSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA------EKFE-ENL---GNVFAMGVDRNGK 391 (1045)
T ss_dssp TTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE------EECC-CCC---CSEEEEEECTTSS
T ss_pred CCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc------eEec-CCc---cceeeeEECCCCC
Confidence 9887654 4666777 89999999 999999999888888 999987432 2233 444 6799999999999
Q ss_pred EEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC----------eEEEEEcCCCeeEEEEe
Q 004683 598 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----------HVKVFDTSTLELRCQIN 666 (737)
Q Consensus 598 ~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg----------~I~vwd~~~~~~~~~~~ 666 (737)
+|++ +.++.|++||+.+++....... |...+.+++|||||++|++++.++ .|++||+.+++ ...+.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~--~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~ 468 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERS--REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT 468 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred EEEEECCCCeEEEEECCCCceEEeccC--CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence 9998 5788999999999987766644 577889999999999999887654 89999999987 44443
Q ss_pred cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 667 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 667 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.+ ... +..++|+| ||++|++++.++...+|+....
T Consensus 469 ~~--------~~~--~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 469 TE--------NSH--DYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp CS--------SSB--EEEEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred CC--------Ccc--cCCceEcC-CCCEEEEEecccCCcCcchhcc
Confidence 22 222 34799999 8999999999999899987543
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.5e-21 Score=203.69 Aligned_cols=270 Identities=12% Similarity=0.034 Sum_probs=198.9
Q ss_pred CEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCC-CeEEEEEe--CCEEEEEe--CCeEE
Q 004683 401 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFSAS--GGKIS 475 (737)
Q Consensus 401 ~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~-~V~~v~~s--~~~l~s~s--dg~i~ 475 (737)
+++++++.+++|.+||..++ +.+..... ++.. .+.+++|+ |++++.++ ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~---------------------~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM---------------------AVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT---------------------EEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCC---------------------cEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 47899999999999887632 22222211 1222 46788999 66665544 68999
Q ss_pred EEECCCCcEEEEecCCC-----CCeEEEEEcCCC-eEEEEE------------CCCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 476 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 476 vwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~-~l~sgs------------~dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
+||+.+++.+..+.... ..+.+++|+|+| .+++++ .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999887776321 256689999999 888776 579999999999988877764 45678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecC----------
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG---------- 605 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg---------- 605 (737)
+++|+|+|++++++ ++.|++||+.+++.. ..+..+... . .+.|+|+|+.++++ .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~~~--~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQSWE--A---ETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTTTT--T---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeeccccC--C---CceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 689999999985432 222222210 1 23778988876552 222
Q ss_pred -------------cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccC
Q 004683 606 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 672 (737)
Q Consensus 606 -------------~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~ 672 (737)
.|.+||+.+++.. .+....+...+.+++|+|+|++++++ ++.|++||+.+++.+..+...
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---- 279 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---- 279 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC----
Confidence 4789999998875 33222345678899999999999988 799999999999888776531
Q ss_pred CCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 673 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 673 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
..+ .+++|+| ++++|++++.++.|++||+.+++.......
T Consensus 280 -----~~~--~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 -----HSY--YSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -----SCC--CEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -----Cce--eeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 223 3899999 889888888999999999999987765543
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.1e-20 Score=196.64 Aligned_cols=277 Identities=9% Similarity=0.030 Sum_probs=190.7
Q ss_pred cCCCCCE-EEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccc
Q 004683 347 SLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 424 (737)
Q Consensus 347 ~spdg~~-la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~ 424 (737)
|.+++.. +++.+.++.|.+||... +..... +.. +...+ +++|+|+|+++++++. ++.|.+||..++..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-- 74 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDT----LEILNQ-ITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-- 74 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTT----CCEEEE-EEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcc----cceeee-EEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--
Confidence 3444444 67788899999999984 444333 222 45566 9999999998777776 88998888764321
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-C--eEEEEECCCCcEEEEecCCCCCeEEE
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATYF 498 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~ 498 (737)
. ..... .+..+..+++|+ |++++++. + + .|.+||+.+++.+..+..+ ....++
T Consensus 75 ---~---------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 75 ---K---------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp ---E---------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred ---e---------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 0 11111 244455458999 88888555 3 3 8999999999988887654 356899
Q ss_pred EEcCCC-eEE-EEECCCe-EEEEecCCCcEE----EEEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeec
Q 004683 499 ILLPQD-LFA-FGFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 499 ~~s~~~-~l~-sgs~dg~-I~vwd~~~~~~~----~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~~~~ 570 (737)
+|+|+| .++ ++..++. |.+|++.....+ .........+..++|+|+|+++++++ .++.|++||+.+++..
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-- 211 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-- 211 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC--
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc--
Confidence 999999 555 4455578 999998754332 11112345689999999999665554 6889999999885531
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCce--eEEecCC--CCC---CCeEEEEEccCCCE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGKC 641 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~~--~~~~~~~--~h~---~~v~~~~~sp~~~~ 641 (737)
..+..+..+ ..+..++|+|+|++++++ .++.|.+||..+++. +..+... .+. .....++|+|||++
T Consensus 212 ~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 212 TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 113323333 467889999999988764 567899999998877 4433221 011 22356899999998
Q ss_pred EEEEec-CCeEEEEEcCCCee
Q 004683 642 IYVSCK-SGHVKVFDTSTLEL 661 (737)
Q Consensus 642 l~sgs~-dg~I~vwd~~~~~~ 661 (737)
|++++. ++.|.+||+.+...
T Consensus 287 l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEETTTTEEEEEETTSCEE
T ss_pred EEEecCCCCcEEEEEecCCcc
Confidence 876555 57999999987653
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.2e-20 Score=198.54 Aligned_cols=273 Identities=11% Similarity=0.076 Sum_probs=200.3
Q ss_pred CEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCC-CeEEEEEecCCCEEEEE-ECCCcEEEeeccCCcccccccce
Q 004683 352 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 352 ~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~-~V~~v~fspdg~~L~s~-s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
+++++++.++.|.+||... +..... +.. ++.. .+.+++|+|+|++++.+ +.++.|.+||+.++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~------- 68 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----MAVDKV-ITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET------- 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----TEEEEE-EEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-------
T ss_pred cEEEEcCCCCeEEEEECCC----CcEEEE-EEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-------
Confidence 4789999999999999884 333332 221 0222 48899999999876554 4578999988764321
Q ss_pred eeeeEEeecCCCeeeeeccCCC---CCCCeEEEEEe--CCEEEEEe-------------CCeEEEEECCCCcEEEEecCC
Q 004683 430 NMESQLYQPSSKLVMTNDIAAD---PKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANP 491 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~---h~~~V~~v~~s--~~~l~s~s-------------dg~i~vwd~~~~~~~~~~~~~ 491 (737)
+....... |...+.+++|+ |+++++++ ++.|.+||+.+++.+..+..
T Consensus 69 --------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 69 --------------LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp --------------EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred --------------EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 11111000 11245678899 77888774 58999999999988877764
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC---------------
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--------------- 555 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg--------------- 555 (737)
...+.+++|+|++ .++++ ++.|.+||+.+++....+..+.. ...+.|+|+|+.++..+.++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 3457788999999 78777 68999999999988877765431 11237899998765544332
Q ss_pred ---------cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCC
Q 004683 556 ---------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 556 ---------~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h 626 (737)
.|.+||+.+++.. .... ..+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+..
T Consensus 211 ~~~~~~~~~~v~~~d~~~~~~~-~~~~----~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLETGEMA-MREV----RIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCCEE-EEEE----EECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccceEEEeCCCCCce-Eeec----CCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---
Confidence 4689999986543 1111 1222 468899999999999888 79999999999988877754
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 279 ~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 35678999999999999999999999999999998888764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3e-20 Score=195.87 Aligned_cols=269 Identities=12% Similarity=0.096 Sum_probs=184.9
Q ss_pred CEEEEE-ECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-CeEE
Q 004683 401 DFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKIS 475 (737)
Q Consensus 401 ~~L~s~-s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g~i~ 475 (737)
++++++ +.|+.|.+|++... |.. ..+... .+...+.+++|+ |+++++++ + +.|.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~----~~~--------------~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHE----GAL--------------TLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTT----SCE--------------EEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCeEEEEEECCC----CcE--------------EEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEE
Confidence 344444 67999999997521 100 011111 366678889999 88888888 4 9999
Q ss_pred EEECC--CCc--EEEEecCCCCCeEEEEEcCCC-eEEEEEC-CCeEEEEecC---CCcEEEEEcCCCcceEEEEEeCCCC
Q 004683 476 IFSLE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLN 546 (737)
Q Consensus 476 vwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg~I~vwd~~---~~~~~~~l~~~~~~v~~l~~sp~g~ 546 (737)
+|++. +++ .+..+..+. .+.+++|+|++ .+++++. ++.|.+||+. +++.+..+..+ ..+.+++|+|+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNR 141 (343)
T ss_dssp EEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSS
T ss_pred EEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCC
Confidence 99997 554 334454444 77899999999 7766664 8899999994 34445555543 4588999999999
Q ss_pred EEEEEe-CCCcEEEEeCCC-Cceeece--eeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCC--Cce-
Q 004683 547 VLVSSG-ADAQLCVWDAVG-WKKLCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH- 617 (737)
Q Consensus 547 ~l~s~s-~dg~I~lwdl~~-~~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~--~~~- 617 (737)
++++++ .++.|++||+.+ +...... ... ...+ ..+..++|+|+|+++++ + .++.|.+||+.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-TVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-CSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccc-cCCC-----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 888887 899999999987 4322211 111 1112 46889999999998776 4 678999999953 432
Q ss_pred -eEEecC--C--CCCCCeEEEEEccCCCEEEE-EecCCeEEEEEcC--CC--eeEEEEecccccCCCCccCceeeEEEEE
Q 004683 618 -TSQLVP--D--KMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTS--TL--ELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 618 -~~~~~~--~--~h~~~v~~~~~sp~~~~l~s-gs~dg~I~vwd~~--~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
...+.. . .....+.+++|+|+|++|++ +..++.|++|++. ++ +.+..+... . . +.+++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--------~-~--~~~~~~ 284 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--------T-Q--PRGFNV 284 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--------S-S--CCCEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--------C-c--cceEEE
Confidence 222221 1 11346778999999998875 4478999999998 33 333333221 1 2 348999
Q ss_pred ccCCCCEEEEEE-CCCcEEEEecC
Q 004683 688 HPLEPNRIALGL-TNGRVHVIEPL 710 (737)
Q Consensus 688 sp~d~~~las~s-~Dg~V~iWd~~ 710 (737)
+| ++++|++++ .++.|.+|++.
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEE
T ss_pred CC-CCCEEEEecCCCCeEEEEEEc
Confidence 99 788888777 68999999554
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=9.5e-20 Score=193.13 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=196.8
Q ss_pred cccCCCCCEEEEEec-------CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEee
Q 004683 345 STSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 416 (737)
Q Consensus 345 ~~~spdg~~la~~s~-------dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~i~iWd 416 (737)
..++|||+.+++++. ++.|.+||..+ +..... ++ ....+..++|+|+|++++.++. ++.|.+||
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQA-IH---NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEE-EE---ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEE-Ee---cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 448999999988874 56799999885 333322 22 2345788999999996665554 78998888
Q ss_pred ccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEEEEecCC
Q 004683 417 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP 491 (737)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~ 491 (737)
..++.. ... +....+.... ......+.+++|+ |+++++++ ++.|.+||..+++.+..+..+
T Consensus 118 ~~~~~~-----~~~-----~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKTGEV-----KGR-----LVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp TTTCCE-----EEE-----EESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred CCCCee-----EEE-----EecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 764322 111 1100000000 0011236789999 77666655 688999999999999888766
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcC----CCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCCC
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 565 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~----~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~~ 565 (737)
...+.+++|+|++ .+++++.++.|.+||..+++.+..+.. +...+.+++|+|+|+.+++++. ++.|.+||+.++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 6668899999999 999999999999999999998877754 4566888999999998777665 489999999885
Q ss_pred ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEE
Q 004683 566 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 643 (737)
+.... +..+ ....++|+|+|+++++ + .++.|.+||..+++.+..+.. ...+.+++|+|+|++|+
T Consensus 264 ~~~~~-----~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 264 NILAK-----VAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLY 329 (353)
T ss_dssp CEEEE-----EECS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEE
T ss_pred cEEEE-----EEcC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEE
Confidence 43322 2222 1246999999997776 4 679999999999998888764 45689999999999888
Q ss_pred EEecCC
Q 004683 644 VSCKSG 649 (737)
Q Consensus 644 sgs~dg 649 (737)
++..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 777664
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=4.8e-21 Score=224.27 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=195.7
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCC---CeEEEEEe--C
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G 463 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~---~V~~v~~s--~ 463 (737)
..+.+++|||||+++++ +.||+|++||+.++.. ..... +|.. .|.+++|| |
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------~~~~~--~~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------TVLIE--GKKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------EEEEC--TTTTTTTTCSEEEECTTS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------EEEec--cccccccccceEEECCCC
Confidence 44788999999997766 7899999998774322 11111 2333 48999999 8
Q ss_pred CEEEEEe-C---------CeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE
Q 004683 464 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 464 ~~l~s~s-d---------g~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l 529 (737)
++|++++ + +.+++||+.+++. ..+. +|...+.+++|+||| .|+.++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 8999887 3 6889999998876 3343 344458899999999 9998885 79999999998877666
Q ss_pred cCCCcce------------------EEEEEeCCCCEEEEEeCCC----------------------------------cE
Q 004683 530 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL 557 (737)
Q Consensus 530 ~~~~~~v------------------~~l~~sp~g~~l~s~s~dg----------------------------------~I 557 (737)
..+...+ .+++|+|||+.|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999987653 78
Q ss_pred EEEeCCCCceeeceeeeecccC-----CCCCCCCeEEEEEecCCCEEEEE-e----cCcEEEEeCCCCceeEEecCCCCC
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTG-----LVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~sp~g~~l~~~-~----dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
++||+.+++. ...+..+ +. ..+..++|+|||+++++. . +..|++||+.++++...+... +.
T Consensus 231 ~~~d~~~~~~-----~~~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~ 301 (723)
T 1xfd_A 231 HVIGLNGPTH-----DLEMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SE 301 (723)
T ss_dssp EEEESSSSCC-----CEECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CS
T ss_pred EEEECCCCce-----eEEeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cC
Confidence 9999987542 1112111 12 578999999999988763 2 257999999998876655331 23
Q ss_pred CCe----EEEEEccCCCEEEE--EecCC------eEEEEE-cCCCee--EEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 628 LPI----TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 628 ~~v----~~~~~sp~~~~l~s--gs~dg------~I~vwd-~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
..+ ..++|||||+.|+. +..++ .|++|| ..+++. ...+.. | ...+. ..++|+| |+
T Consensus 302 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~--~~~~~-~~~~~sp-dg 371 (723)
T 1xfd_A 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------G--DWDVT-KILAYDE-KG 371 (723)
T ss_dssp SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------S--SSCEE-EEEEEET-TT
T ss_pred CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------C--CeEEE-eeeEEcC-CC
Confidence 333 37899999997775 45566 577777 344441 222221 1 11122 2368999 78
Q ss_pred CEEEEEECC---CcEEEEecCCC
Q 004683 693 NRIALGLTN---GRVHVIEPLES 712 (737)
Q Consensus 693 ~~las~s~D---g~V~iWd~~~~ 712 (737)
+.|+..+.+ +.++||++...
T Consensus 372 ~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp TEEEEEESSSCTTCCEEEEECSS
T ss_pred CEEEEEEcCCCCcceEEEEEeCC
Confidence 888766555 78999998653
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=4e-19 Score=189.48 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=188.3
Q ss_pred CCCCCEEEEEe----cCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEeeccC
Q 004683 348 LPDADSAVCAK----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 419 (737)
Q Consensus 348 spdg~~la~~s----~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d----g~i~iWd~~~ 419 (737)
.+....++.|+ .++.|.+|.++.. .+........ +...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 34445566664 4568999988642 3443332211 45678889999999999999986 7999998653
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe--CCeEEEEECCCCcEEEE------ecC-
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT------FAN- 490 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s--dg~i~vwd~~~~~~~~~------~~~- 490 (737)
.++.+........+......+++.++++++++ ++.|.+|++.....+.. ..+
T Consensus 85 -------------------~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 85 -------------------EKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp -------------------TTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred -------------------CCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 22222111110124455667777777777776 78999999975432211 111
Q ss_pred -------CCCCeEEEEEcCCC-eEEEEE-CCCeEEEEecCCCc-------E------EEEEcCCCcceEEEEEeCCCCEE
Q 004683 491 -------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK-------T------KAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 491 -------~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~~~-------~------~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
+...+.+++|+|+| .+++++ .++.|.+|++.... . ......+...+..++|+|+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 12345789999999 666555 47899999887543 1 11122345567899999999988
Q ss_pred EEEe-CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e--cCcEEEEeCC--CCc--eeEE
Q 004683 549 VSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H--EGQIDVYEAP--TLN--HTSQ 620 (737)
Q Consensus 549 ~s~s-~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~--dg~I~iwd~~--~~~--~~~~ 620 (737)
++++ .++.|.+||+.++.......+..... +. ..+..++|+|+|++|+++ . ++.|.+|++. +++ .+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~-~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVAADTV-NA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEESCSS-CC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEecCCC-CC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 7777 68999999998754322222221121 21 457899999999998774 3 5789999985 454 3333
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEE--cCCCeeEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFD--TSTLELRC 663 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd--~~~~~~~~ 663 (737)
+.. ...+.+++|+|+|++|++++ .++.|.+|+ ..++++..
T Consensus 302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 432 45678999999999998887 578999965 45676544
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.8e-20 Score=190.21 Aligned_cols=252 Identities=9% Similarity=-0.029 Sum_probs=179.6
Q ss_pred EEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccC-CcccccccceeeeeE
Q 004683 356 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQ 434 (737)
Q Consensus 356 ~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~-~~~~~g~~~~~~~~~ 434 (737)
.++.|++|++||+.. +.... +.. |...|.+++|+|+|++|++++ ++.|.+||+.+ +..
T Consensus 17 ~~~~~~~i~~~d~~~----~~~~~--~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~------------ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT----RKMRV--VWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP------------ 75 (297)
T ss_dssp -CCCCEEEEEEETTT----TEEEE--EEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC------------
T ss_pred CCCcceeEEEEeCCC----Cceee--ecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc------------
Confidence 345788999999884 44443 223 788999999999999999987 78999988764 322
Q ss_pred EeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C----CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 004683 435 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 506 (737)
Q Consensus 435 l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l 506 (737)
..... ..+...+.+++|+ ++++++++ + ..|..|+..++. ...+..+. .+.+++|+|++ .+
T Consensus 76 ---------~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l 143 (297)
T 2ojh_A 76 ---------EKVDT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSF 143 (297)
T ss_dssp ---------EECCC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEE
T ss_pred ---------eEecc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEE
Confidence 11111 1234678889999 88888887 3 345555555554 34444433 48899999999 66
Q ss_pred E-EEECCCeEEEEec--CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeecccCCCC
Q 004683 507 A-FGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 582 (737)
Q Consensus 507 ~-sgs~dg~I~vwd~--~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~ 582 (737)
+ +++.++.+.+|++ .++ ....+..+...+.+++|+|+|+.+++++ .++.+++|++.... ..+..+. .+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~-~~~- 216 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERIT-DSA- 216 (297)
T ss_dssp EEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECC-CCS-
T ss_pred EEEECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEe-cCC-
Confidence 5 7888999999985 344 3456666888999999999999888766 58999999886311 1222222 233
Q ss_pred CCCCeEEEEEecCCCEEEE-Eec-----------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 583 ETTIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 583 ~~~~v~~l~~sp~g~~l~~-~~d-----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
..+.+++|+|+|++|++ +.+ +.|++||+.+++.........|...+.+++|+|++++|++++.+.
T Consensus 217 --~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 --YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred --cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57889999999999887 443 569999998876643332223567889999999999999887654
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=3.5e-19 Score=188.80 Aligned_cols=260 Identities=14% Similarity=0.138 Sum_probs=172.0
Q ss_pred eecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe----CCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCCC-eE
Q 004683 436 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LF 506 (737)
Q Consensus 436 ~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s----dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~-~l 506 (737)
||..++.+...... .+...+..++|+ |+ +++++ ++.|++|++.+++ .+..+..+...+..++|+|+| .+
T Consensus 23 ~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l 100 (347)
T 3hfq_A 23 LDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLV 100 (347)
T ss_dssp EETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEE
T ss_pred EcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEE
Confidence 44555544331111 244667789999 55 55544 3799999997765 344444566778899999999 88
Q ss_pred EEEE-CCCeEEEEecC-CCc--EEEEEcC---------CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeecee
Q 004683 507 AFGF-DDSSILVHCPC-TKK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKF 572 (737)
Q Consensus 507 ~sgs-~dg~I~vwd~~-~~~--~~~~l~~---------~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~-~~~~~~~~~ 572 (737)
++++ .++.|.+|++. ++. .+..+.. +...+.+++|+|+|+.+++...++.|++||+. ++.......
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee
Confidence 8877 67899999996 333 2333321 12248899999999966666678899999998 433221111
Q ss_pred eeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCC--Cce--eEEecCCCC----CCCeEEEEEccCCCEE
Q 004683 573 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCI 642 (737)
Q Consensus 573 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~--~~~--~~~~~~~~h----~~~v~~~~~sp~~~~l 642 (737)
.. ...+ ..+..++|+|+|+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|
T Consensus 181 ~~-~~~g-----~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 181 LT-MEAG-----FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EE-CCTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EE-cCCC-----CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 11 1122 46788999999997776 4 678999999874 443 222222111 1458899999999988
Q ss_pred E-EEecCCeEEEEEcCC-C--eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC-CcEEEE--ecCCCce
Q 004683 643 Y-VSCKSGHVKVFDTST-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVI--EPLESEV 714 (737)
Q Consensus 643 ~-sgs~dg~I~vwd~~~-~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~V~iW--d~~~~~~ 714 (737)
+ ++..++.|.+|++.. + +.+..+..+ . ..+.+++|+| |+++|++++.+ +.|.+| |..+++.
T Consensus 255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--------~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTADGHLTLIQQISTE--------G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEETTTEEEEEEECGGGCEEEEEEEECS--------S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeEEEecC--------C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 5 555689999999973 2 333333221 1 1234899999 88888877754 899999 4455553
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=2e-20 Score=219.02 Aligned_cols=318 Identities=10% Similarity=0.053 Sum_probs=212.4
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCC---CeEEEEEecCCCEEEEEEC---------CCcE
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TATH 412 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~---~V~~v~fspdg~~L~s~s~---------dg~i 412 (737)
..|+|||++++ .+.|++|++|++.+ +.+..+ +.+ |.. .|.+++|||||++|++++. +++|
T Consensus 21 ~~~s~dg~~~~-~~~d~~i~~~~~~~----g~~~~~-~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 21 PNWISGQEYLH-QSADNNIVLYNIET----GQSYTI-LSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CEESSSSEEEE-ECTTSCEEEEESSS----CCEEEE-ECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cEECCCCeEEE-EcCCCCEEEEEcCC----CcEEEE-Ecc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 34999996555 45699999999984 555554 332 322 4899999999999999887 5777
Q ss_pred EEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEec-
Q 004683 413 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA- 489 (737)
Q Consensus 413 ~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~- 489 (737)
++||+.+ ++.+... .....+.+++|| |+.|+++.++.|++||+.+++..+...
T Consensus 93 ~~~d~~~---------------------g~~~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 93 YIYDLSN---------------------GEFVRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEETTT---------------------TEECCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred EEEECCC---------------------Cccccce---ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence 7776653 3331000 122457889999 889999999999999999887755332
Q ss_pred CCCCCe-----------------EEEEEcCCC-eEEEEECCC----------------------------------eEEE
Q 004683 490 NPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SILV 517 (737)
Q Consensus 490 ~~~~~v-----------------~~~~~s~~~-~l~sgs~dg----------------------------------~I~v 517 (737)
++...| .+++|+||| .|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 332222 489999999 888887652 7889
Q ss_pred EecCCCcEE---E-----EEcCCCcceEEEEEeCCCCEEEEEeCCC----cEEEEe----CCCCceeeceeeeecc----
Q 004683 518 HCPCTKKTK---A-----KLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWD----AVGWKKLCSKFLHSFQ---- 577 (737)
Q Consensus 518 wd~~~~~~~---~-----~l~~~~~~v~~l~~sp~g~~l~s~s~dg----~I~lwd----l~~~~~~~~~~~~~~~---- 577 (737)
||+.+++.. . .+.+|...+.+++|+||++.+++....+ .|.+|| +.+++. .. +.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-----~~-~~~~~~ 302 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-----PK-TQEHIE 302 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-----CG-GGEEEE
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-----EE-EEeccc
Confidence 999987642 1 1335788899999999987777644332 488899 766432 22 22
Q ss_pred cCCCCCCCCeE-----EEEEecCCCEEEE--E-ecC--cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEec
Q 004683 578 TGLVPETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 578 ~~~~~~~~~v~-----~l~~sp~g~~l~~--~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
.++. ..+. .++|+|+|+.++. + .+| .|++||+.+++ ...+.. +...+..+.++ +++.|+..+.
T Consensus 303 ~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 303 ESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp ECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEEES
T ss_pred ccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEEEe
Confidence 3443 4455 7899999986654 3 344 68888887766 344433 35568888888 8887776665
Q ss_pred C-----CeEEEEEcCC--Cee-EEEEecccccCCCCccCceeeEEEEEccCCCCEEE-EEECC--CcEEEEecCCCce
Q 004683 648 S-----GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV 714 (737)
Q Consensus 648 d-----g~I~vwd~~~--~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~D--g~V~iWd~~~~~~ 714 (737)
+ +.+++|.+.. +.. ...+... ..++ ...+ ..+.|+| ++++++ +++.+ ..+.+|++.+++.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~--~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQY--YTASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCB--EEEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCc---cCCC-CCce--EEEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 4 7888888764 421 2222210 0011 1223 3789999 666655 44444 4788999988763
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=7.7e-19 Score=191.96 Aligned_cols=309 Identities=12% Similarity=0.078 Sum_probs=196.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc--ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~--~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
...+..+++++++.++++++.|+ +++|+....... .+.... .+........+ .+...|.+++|+ |
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN----KIVDKVQGLLV------PMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT----CEEECCCCEEE------CCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc----cccccCccccc------cCCCcccEEEEcCCC
Confidence 45689999999999999999888 889876421110 000000 00111111111 367789999999 8
Q ss_pred CEEE----EEe-CCeEEEEECCCC--------c---EEEEecCCCCCeEEEEEcCC-C-eEEEEECCCeEEEEecCCCcE
Q 004683 464 SHLF----SAS-GGKISIFSLETF--------Q---TLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKT 525 (737)
Q Consensus 464 ~~l~----s~s-dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~-~l~sgs~dg~I~vwd~~~~~~ 525 (737)
++|+ +|+ |+.|++||+.++ + ....+.+|...|.+++|+|+ + .|++|+.||+|++||++++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 8888 677 899999998765 2 24556679999999999998 5 999999999999999999877
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-cccCCCCCCCCeEEEEEecCCCEEEE-E-
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-I- 602 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~-~- 602 (737)
+....+|...|.+++|+|+|++|++|+.||.|++||++. .......... ....|. ..|.+++|++++.++++ +
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEE
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCc---eeEEEEEEecCceEEEEEcc
Confidence 777777899999999999999999999999999999983 2221111110 011122 47999999999988876 3
Q ss_pred ecC------cEEEEeCCCCc-----eeEEecCC-----CCCCCeEEEEEccCCCEEEEEec-CCeEEEEEcCCCe---eE
Q 004683 603 HEG------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE---LR 662 (737)
Q Consensus 603 ~dg------~I~iwd~~~~~-----~~~~~~~~-----~h~~~v~~~~~sp~~~~l~sgs~-dg~I~vwd~~~~~---~~ 662 (737)
.+| .+++|++++.. ....+... ....+...+.+-++.+++++++. .+.|.|....... ..
T Consensus 261 ~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~ 340 (434)
T 2oit_A 261 ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWES 340 (434)
T ss_dssp TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEE
T ss_pred CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEE
Confidence 443 38999997642 11222111 11222223333377777766554 4557777654321 11
Q ss_pred EEEecc--cccCCCCccCceeeEEEEE--ccCC------------CCEEEEEECCCcEEEEecCC
Q 004683 663 CQINLT--AYAQPGTISLELYPLVIAA--HPLE------------PNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 663 ~~~~~~--~~~~~g~~~~~v~~~~v~~--sp~d------------~~~las~s~Dg~V~iWd~~~ 711 (737)
..+.-. ...+....+....++.+++ +..+ -..|.+-+.||.+..|.+-+
T Consensus 341 ~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 341 WLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred EeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111100 0001100111222223332 2211 24788889999999999866
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.9e-20 Score=190.09 Aligned_cols=231 Identities=11% Similarity=0.016 Sum_probs=170.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEeCCeEEEEECCC-CcEEEEecCC-CCCeEEEEEcCCC-eEEEEEC--C--CeEEEEecC
Q 004683 451 DPKDSISCFALR--GSHLFSASGGKISIFSLET-FQTLATFANP-PPIATYFILLPQD-LFAFGFD--D--SSILVHCPC 521 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~-~l~sgs~--d--g~I~vwd~~ 521 (737)
.|...|.+++|+ |+++++++++.|++||+.+ ++.......+ ...+.+++|+|++ .+++++. + ..|..|+..
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence 378889999999 8899998899999999999 8877766665 3678899999999 8888883 3 355555666
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
++. ...+..+ ..+..++|+|+++.++ +++.++.+++|+++... .....+. .+. ..+.+++|+|+|+.++
T Consensus 119 ~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~-~~~---~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 119 GGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----GVETRLT-HGE---GRNDGPDYSPDGRWIY 188 (297)
T ss_dssp CCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----CCEEECC-CSS---SCEEEEEECTTSSEEE
T ss_pred CCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC----CcceEcc-cCC---CccccceECCCCCEEE
Confidence 555 3444433 3488999999999877 77789999999864311 1112122 222 5799999999999888
Q ss_pred E-E-ecCcEEEEeCC-CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----------CeEEEEEcCCCeeEEEEe
Q 004683 601 S-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 601 ~-~-~dg~I~iwd~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----------g~I~vwd~~~~~~~~~~~ 666 (737)
+ + .++.+.+|++. .+..+..+.. +...+.+++|+|+|++|++++.+ +.|++||+.+++......
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 6 4 47889999876 4555555543 46778999999999999988765 569999999887644432
Q ss_pred cccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 667 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 667 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
.. +| ...+. +++|+| ++++|++++.+.
T Consensus 267 ~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LF-----GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EE-----ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred cC-----CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 22344 789999 788888777653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.7e-19 Score=187.82 Aligned_cols=276 Identities=11% Similarity=0.040 Sum_probs=183.4
Q ss_pred cCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEeeccCCcccccccceeeeeEE
Q 004683 359 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQL 435 (737)
Q Consensus 359 ~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~---dg~i~iWd~~~~~~~~g~~~~~~~~~l 435 (737)
.++.+.+|.++.. .+......... +...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 14 ~~~~i~v~~~d~~--tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTT--AKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETT--TTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCC--CCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 3566888887642 34444332222 456788899999999 666654 58999998753211
Q ss_pred eecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECC-CC--cEEEEecC---------CCCCeEEEE
Q 004683 436 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE-TF--QTLATFAN---------PPPIATYFI 499 (737)
Q Consensus 436 ~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~-~~--~~~~~~~~---------~~~~v~~~~ 499 (737)
..+.... .+...+..++|+ |++|++++ ++.|.+|++. ++ ..+..+.. +...+.+++
T Consensus 76 ------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 76 ------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp ------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred ------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 0111100 255667889999 88888877 6899999996 33 23333322 122488999
Q ss_pred EcCCC-eEEEEECCCeEEEEecC-CCcEEE--EEcC-CCcceEEEEEeCCCCEEEE-EeCCCcEEEEeCCC--Cceeece
Q 004683 500 LLPQD-LFAFGFDDSSILVHCPC-TKKTKA--KLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSK 571 (737)
Q Consensus 500 ~s~~~-~l~sgs~dg~I~vwd~~-~~~~~~--~l~~-~~~~v~~l~~sp~g~~l~s-~s~dg~I~lwdl~~--~~~~~~~ 571 (737)
|+|+| .++++..++.|.+|++. +++... .+.. ....+..++|+|||+++++ +..++.|.+|++.. +......
T Consensus 148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 99999 88888888999999998 554332 2222 2336788999999996665 45688999999874 3322212
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEeCCC-C--ceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd~~~-~--~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.+.....+.. ....+..++|+|+|++|++ + .++.|.+|++.. + +.+..+.. +...+.+++|+|||++|++++
T Consensus 228 ~~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 228 IVKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEE
T ss_pred eeeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEE
Confidence 2221121100 0135889999999998865 3 578999999973 2 34444433 355688999999999998877
Q ss_pred cC-CeEEEE--EcCCCeeEE
Q 004683 647 KS-GHVKVF--DTSTLELRC 663 (737)
Q Consensus 647 ~d-g~I~vw--d~~~~~~~~ 663 (737)
.+ +.|.+| |..+|++..
T Consensus 305 ~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTTEEEEEEECTTTCCEEE
T ss_pred cCCCcEEEEEEeCCCCeEEe
Confidence 65 899999 556677553
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.1e-19 Score=207.11 Aligned_cols=266 Identities=9% Similarity=0.009 Sum_probs=186.2
Q ss_pred CCCeEEEEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 465 (737)
..+|++++|||||++||+++. ||+++||++.+ +...+... ++...+.+++|+ ++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~---------------------g~~~~lt~--~~~~~~~~~~~spd~~ 77 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG---------------------GETVKLNR--EPINSVLDPHYGVGRV 77 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET---------------------TEEEECCS--SCCSEECEECTTCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcC---------------------CCcEeeec--ccccccccccCCCCeE
Confidence 567999999999999999987 99999998642 22222111 233678899999 755
Q ss_pred EEEEeC----CeEEEEECCC---CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 466 LFSASG----GKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 466 l~s~sd----g~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
+++++. ....+|.+.. +... .+.... .+...+|+|++ .+++.+.++.+.+||+.+++.......+ .
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~-- 152 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G-- 152 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--
Confidence 555442 4455554432 3332 333222 34466888887 4444445555669999988766555433 3
Q ss_pred EEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC--cEEE
Q 004683 537 TCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDV 609 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~d----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg--~I~i 609 (737)
.+++|+|||+++++++.+ +.|++||+.+++. ..+ ..+. ..+..++|||||+.|+++ .++ .|++
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~------~~l-~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL------RVF-DSGE---GSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC------EEE-CCSS---CEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc------eEe-ecCC---CccccceECCCCCEEEEccCCCeeEEEE
Confidence 789999999999988877 7899999988542 112 2333 578999999999999974 667 8999
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEE--------EccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCcee
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 681 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~--------~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 681 (737)
||+.+++.. .+.. +...+.+++ |+|||.++++++.||++++|++ |+..... ...+.
T Consensus 223 ~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v~ 286 (582)
T 3o4h_A 223 VDPRDGSVE-DLEL--PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNHG 286 (582)
T ss_dssp ECTTTCCEE-ECCC--SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEEE
T ss_pred EcCCCCcEE-EccC--CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCceE
Confidence 999988876 4433 455566666 9999999999999999999999 6544311 22243
Q ss_pred eEEEEEccCCCCEEEEEECCC---cEEEEecCC
Q 004683 682 PLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 711 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg---~V~iWd~~~ 711 (737)
+++|+ ++.++++++.+. .+.+|+...
T Consensus 287 --~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 --RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 78888 578888887774 466776643
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=5.5e-19 Score=186.77 Aligned_cols=240 Identities=15% Similarity=0.035 Sum_probs=179.6
Q ss_pred EEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCC-CCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCC
Q 004683 459 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGH 532 (737)
Q Consensus 459 v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~ 532 (737)
++++ +.++++++ ++.|++||+.+++.+..+..+. ..+..++|+|++ .++ ++..++.|.+||+.+++.+..+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 3455 55677777 8999999999999888887543 256789999999 554 5557899999999999888777532
Q ss_pred C------cceEEEEEeCCCCEEEEEeCC------------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec
Q 004683 533 Q------NRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 594 (737)
Q Consensus 533 ~------~~v~~l~~sp~g~~l~s~s~d------------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 594 (737)
. ..+.+++|+|+|+++++++.+ +.|.+||+.+++... .+.... .. ..+.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~-~~----~~~~~~~~s~ 157 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVRTFP-MP----RQVYLMRAAD 157 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSEEEE-CC----SSCCCEEECT
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--eeeecc-CC----CcccceeECC
Confidence 2 237889999999999998865 899999998743221 111111 11 4588899999
Q ss_pred CCCEEEEEecCcEEEEeCCCCceeEEecCCC-------------------------------------------------
Q 004683 595 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK------------------------------------------------- 625 (737)
Q Consensus 595 ~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~------------------------------------------------- 625 (737)
+|+ ++++ ++.|++||..+++.+..+....
T Consensus 158 dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 158 DGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp TSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred CCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 999 5553 3459999999988777664321
Q ss_pred -----------------CCCCeEEEEEcc-CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 626 -----------------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 626 -----------------h~~~v~~~~~sp-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
+...+.+++|+| ++++++++ ++.|++||+.+++.+..+.. ..... +++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~ 302 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYY--CVAF 302 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--EEEE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCcc--ceEE
Confidence 011355678889 99999988 88999999999998777653 12233 8999
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
+| ++++|++++.++.|++||+.+++.......+
T Consensus 303 s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 303 DK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99 7888888888999999999998876655433
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2.4e-19 Score=209.23 Aligned_cols=287 Identities=12% Similarity=0.091 Sum_probs=193.4
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc-eeeeeEEeecCCC-------eeeeeccCCCCCCCeEEEEE
Q 004683 390 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN-VNMESQLYQPSSK-------LVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 390 ~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~-~~~~~~l~~~~~~-------~~~~~~~~~~h~~~V~~v~~ 461 (737)
.+..+.|+ |..+++++.|+ | +||+.++. .. . .+.+.... .-.+ ..+...|.+++|
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~-----~~~~----~l~~~~~~~~~l~~~~~~~----~~~~~~v~~~~~ 89 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGK-----SAQT----TRFSAADLNALMPEGCKFQ----TTDAFPSFRTLD 89 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC------------C----EEEEHHHHHTTC---------------CCCEEEEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCc-----EeeE----EeechhHhhhhccchhccc----cccccCceeEEE
Confidence 45668888 66778888888 8 99987432 20 0 01111000 0000 012367999999
Q ss_pred e-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCC-----CcEEEEEcCCCc
Q 004683 462 R-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKGHQN 534 (737)
Q Consensus 462 s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~-----~~~~~~l~~~~~ 534 (737)
+ ++.++.+.++.|++||+.+++.... ..+...+.+++|+||| .|+++ .++.|++||+.+ ++.......+..
T Consensus 90 spd~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 90 AGRGLVVLFTQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TTTTEEEEEETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CCCCeEEEEECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 9 8777777899999999998866544 4556678889999999 88885 689999999998 876654444333
Q ss_pred c--------------eEEEEEeCCCCEEEEEe---------------------------------CCCcEEEEeCCCCce
Q 004683 535 R--------------ITCLAYSLSLNVLVSSG---------------------------------ADAQLCVWDAVGWKK 567 (737)
Q Consensus 535 ~--------------v~~l~~sp~g~~l~s~s---------------------------------~dg~I~lwdl~~~~~ 567 (737)
. +.+++|+|||++|++++ .+..|++||+.+++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 2 48899999999999987 446799999998543
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecC-----cEEEEeCCCCceeEEecCCCCC---CCeEEEEEcc-
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSC- 637 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg-----~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~~sp- 637 (737)
.. +. ....+. ..+.+++|+|||+.|++ +.++ .|++||+.+++....+....+. ..+.+++|+|
T Consensus 248 ~~---~~-~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~ 320 (706)
T 2z3z_A 248 VY---LQ-TGEPKE---KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG 320 (706)
T ss_dssp EE---CC-CCSCTT---CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred Ee---ec-cCCCCc---eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence 21 11 112233 57899999999998887 4554 8999999998444333221112 2346789999
Q ss_pred -CCCEEEEEecCCeEEEEEcC-CCeeEEEEecccccCCCCccCceeeEE-EEEccCCCCEEEEEE-CCC----cEEEEec
Q 004683 638 -DGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLV-IAAHPLEPNRIALGL-TNG----RVHVIEP 709 (737)
Q Consensus 638 -~~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~-v~~sp~d~~~las~s-~Dg----~V~iWd~ 709 (737)
||+++++++.||.++||.+. ++.....+..+ ...+ .. ++|+| +++.|+.++ .++ .|..|++
T Consensus 321 ~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--------~~~v--~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 321 SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--------EWEV--TNFAGFDP-KGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp CSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--------SSCE--EEEEEECT-TSSEEEEEESSSCTTCBEEEEEET
T ss_pred CCCEEEEEEccCCccEEEEEECCCCEEEecCCC--------CeEE--EeeeEEcC-CCCEEEEEecCCCCceEEEEEEEc
Confidence 99999999999999999876 56655555421 2223 24 79999 777665554 444 6677777
Q ss_pred CCCc
Q 004683 710 LESE 713 (737)
Q Consensus 710 ~~~~ 713 (737)
.+++
T Consensus 390 ~~~~ 393 (706)
T 2z3z_A 390 KGGK 393 (706)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 6654
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=3.2e-19 Score=203.28 Aligned_cols=261 Identities=11% Similarity=0.018 Sum_probs=186.2
Q ss_pred ccCCCCCEEEEEec-CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEeeccCCc
Q 004683 346 TSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNK 421 (737)
Q Consensus 346 ~~spdg~~la~~s~-dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~---dg~i~iWd~~~~~ 421 (737)
.++|||+.||+++. ||+++||+++ .+...++ .. .+...|..++|||| +.+++++. +....+|.+..
T Consensus 28 ~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~l--t~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~-- 97 (582)
T 3o4h_A 28 QGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKL--NR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT-- 97 (582)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEE----TTEEEEC--CS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET--
T ss_pred ecCCCCCeEEEEEccCCceeEEEEc----CCCcEee--ec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec--
Confidence 38899999999987 9999999985 4555553 23 03368999999999 77777765 45667765432
Q ss_pred ccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC--EEEEEeCCeEEEEECCCCcEEEEecCCCCCeEE
Q 004683 422 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKISIFSLETFQTLATFANPPPIATY 497 (737)
Q Consensus 422 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~--~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~ 497 (737)
|+ ..+.. .. . ....+...+|+ |+ .+++++++.+.+||+.+++.......+. .+
T Consensus 98 --------------~~-~g~~~-~l-~---~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~ 154 (582)
T 3o4h_A 98 --------------SR-PGEEQ-RL-E---AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FG 154 (582)
T ss_dssp --------------TS-TTCCE-EC-T---TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CE
T ss_pred --------------cC-CCccc-cc-c---CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ce
Confidence 11 11111 11 1 11223344555 43 3444446666699999887666554433 78
Q ss_pred EEEcCCC-eEEEEECC----CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeec
Q 004683 498 FILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCS 570 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~d----g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg--~I~lwdl~~~~~~~~ 570 (737)
++|+||| .+++++.+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++..
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-- 231 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-- 231 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--
Confidence 9999999 88887777 78999999988765 6777888999999999999999888888 8999999985432
Q ss_pred eeeeecccCCCCCCCCeEEEE--------EecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 641 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~--------~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 641 (737)
...++. ..+..++ |+|||..+++ +.++.+++|++ ++.... ....+.+++|+ ++++
T Consensus 232 -----~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 232 -----DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RGKL 295 (582)
T ss_dssp -----ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TTEE
T ss_pred -----EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CCEE
Confidence 122333 3455555 9999976666 48899999999 665441 24678899999 9999
Q ss_pred EEEEecCC---eEEEEEcCC
Q 004683 642 IYVSCKSG---HVKVFDTST 658 (737)
Q Consensus 642 l~sgs~dg---~I~vwd~~~ 658 (737)
+++++.+. .+++|+..+
T Consensus 296 l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCCCCCeEEEEcCCC
Confidence 99888774 477777654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=7.5e-18 Score=181.23 Aligned_cols=297 Identities=12% Similarity=0.031 Sum_probs=191.2
Q ss_pred CCCCeEE-----EEEecCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 387 FGGRVVR-----LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 387 h~~~V~~-----v~fspdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
|...+.. .+|||||++|+.++. ++...|| +|+..++....... ++...+..++
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~-------------------~~d~~~g~~~~lt~--~~~~~~~~~~ 87 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY-------------------LLDLNTQVATQLTE--GRGDNTFGGF 87 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-------------------EEETTTCEEEECCC--SSCBCSSSCE
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEE-------------------EEeCCCCceEEeee--CCCCCccceE
Confidence 4545555 899999999999998 7754444 34555555544332 3444455678
Q ss_pred Ee--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEE--EcCCC-eEEEE----------------------ECC
Q 004683 461 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------FDD 512 (737)
Q Consensus 461 ~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~s~~~-~l~sg----------------------s~d 512 (737)
|+ |+.|+.++ ++.|++||+.+++....+..+...+.... ++|++ .++.. ..+
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 99 88999988 78999999999988777776666554444 48999 66532 234
Q ss_pred CeEEEEecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCC------CcEEEEeCCCCceeeceeeeecccCCCCCCC
Q 004683 513 SSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 513 g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~d------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
..|++||+.+++... +..+...+..++|+| +|+.++.++.+ ..|.++|..++. ...+...... .
T Consensus 168 ~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~~~~~--~ 238 (388)
T 3pe7_A 168 CRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------MRKVKTHAEG--E 238 (388)
T ss_dssp EEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------CEESCCCCTT--E
T ss_pred ceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------eEEeeeCCCC--c
Confidence 689999999987544 444667789999999 99998887763 378888887632 1212222210 2
Q ss_pred CeEEEEEecCCCEEEE-E-ecC----cEEEEeCCCCceeEEecCCCCC---CCeEEEEEccCCCEEEEE---------ec
Q 004683 586 IVNHIQFHPDQIHLLS-I-HEG----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS---------CK 647 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~-~-~dg----~I~iwd~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~sg---------s~ 647 (737)
.+..++|+|+|+.|+. + .++ .|++||+.+++.........+. .....++|+|||+.|+.. ..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 4778999999998765 4 222 3999999988753322111100 001123799999988754 45
Q ss_pred CCeEEEEEcCCCeeEEEEecccccCC-CCccCceeeEEEEEccCCCCEEEEEE-CCCcEEEEecCCCcee
Q 004683 648 SGHVKVFDTSTLELRCQINLTAYAQP-GTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVE 715 (737)
Q Consensus 648 dg~I~vwd~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~iWd~~~~~~~ 715 (737)
+..|++||+.+++... +..+..... -.......+.+++|+| |++.|+.++ .+|...||.+.-.+..
T Consensus 319 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHR-VARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp CCEEEEEETTTTEEEE-EEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred CCEEEEEeccCCceEE-eccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEECChhc
Confidence 6789999999987643 332210000 0000001234789999 788777655 5777888877554433
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.3e-18 Score=181.92 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=176.9
Q ss_pred EEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-
Q 004683 393 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA- 469 (737)
Q Consensus 393 ~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~- 469 (737)
.+++++++.++++++.+++|.+||..++ +.+..... +....+..++|+ |++++.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---------------------~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---------------------TVYKSCVM-PDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---------------------EEEEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---------------------cEEEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence 4578889999999999999999887642 22221110 122246788999 6665544
Q ss_pred e-CCeEEEEECCCCcEEEEecCCC------CCeEEEEEcCCC-eEEEEECC------------CeEEEEecCCCcE---E
Q 004683 470 S-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKT---K 526 (737)
Q Consensus 470 s-dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~s~~~-~l~sgs~d------------g~I~vwd~~~~~~---~ 526 (737)
. ++.|.+||+.+++....+..+. ..+.+++|+|+| .+++++.+ +.|.+||+.+++. +
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 4 7999999999998887776332 236789999999 88888765 8999999988543 3
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-----------------------------cc
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------------------FQ 577 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~-----------------------------~~ 577 (737)
..+. +...+.+++|+|+|+ +++++ +.|.+||+.+++......... +.
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 3444 334688999999999 55554 349999998865433211110 00
Q ss_pred cC---------------------CC---------CCCCCeEEEEEec-CCCEEEEEecCcEEEEeCCCCceeEEecCCCC
Q 004683 578 TG---------------------LV---------PETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 626 (737)
Q Consensus 578 ~~---------------------~~---------~~~~~v~~l~~sp-~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h 626 (737)
.. .. +....+..++|+| +|++++++ ++.|.+||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--- 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--- 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---
Confidence 00 00 0001456778889 99999888 89999999999998877754
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
...+.+++|+|+|++|++++.++.|++||..+++.+..+..
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34577999999999999888899999999999998888764
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=5.2e-17 Score=173.05 Aligned_cols=278 Identities=13% Similarity=0.097 Sum_probs=179.6
Q ss_pred CCCEEEEEEC----CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C
Q 004683 399 SGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 471 (737)
Q Consensus 399 dg~~L~s~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d 471 (737)
...+++.|+. ++.|.+|.+ |..++.+...... +...+..++|+ |++|++++ +
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~-------------------d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~ 70 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRF-------------------NEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEF 70 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEE-------------------ETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECC
T ss_pred CceEEEEEeccCCCCCCEEEEEE-------------------eCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEcc
Confidence 3345556643 567888864 4444443332221 45566778999 88888888 4
Q ss_pred ----CeEEEEECCC--CcE--EEEecCCCCCeEEEEEcCCC-eEEEEE-CCCeEEEEecCCCcEEEE------EcC----
Q 004683 472 ----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK------LKG---- 531 (737)
Q Consensus 472 ----g~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~~~~~~~------l~~---- 531 (737)
+.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|++.....+.. ..+
T Consensus 71 ~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~ 148 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD 148 (361)
T ss_dssp SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence 7999998865 433 3334445556777787 67 666555 688999999975432211 111
Q ss_pred ----CCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCce------eece---eeeecccCCCCCCCCeEEEEEecCCC
Q 004683 532 ----HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK---FLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 532 ----~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~~~~------~~~~---~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
+...+.+++|+|+|+++++++ .++.|.+|++..... .... .......+ ..+..++|+|+|+
T Consensus 149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~spdg~ 223 (361)
T 3scy_A 149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-----SGPRHLIFNSDGK 223 (361)
T ss_dssp TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-----CCEEEEEECTTSS
T ss_pred ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC-----CCCeEEEEcCCCC
Confidence 123458899999999776655 478999999876331 1100 11112222 4678999999999
Q ss_pred EEEE-E-ecCcEEEEeCCCCce--eEEecC-CCCCCCeEEEEEccCCCEEEEEecC--CeEEEEEcC--CCeeEEEEecc
Q 004683 598 HLLS-I-HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTS--TLELRCQINLT 668 (737)
Q Consensus 598 ~l~~-~-~dg~I~iwd~~~~~~--~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~d--g~I~vwd~~--~~~~~~~~~~~ 668 (737)
++++ + .++.|.+||+.++.. +..+.. ..+.....+++|+|||++|++++.+ +.|.+|++. +++........
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 8887 4 578999999987754 232322 1234557899999999999776654 899999996 45532221111
Q ss_pred cccCCCCccCceeeEEEEEccCCCCEEEEEE-CCCcEEEEecC--CCce
Q 004683 669 AYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPL--ESEV 714 (737)
Q Consensus 669 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~iWd~~--~~~~ 714 (737)
. ...+.+++|+| |+++|++++ .++.|.+|++. +++.
T Consensus 304 --------~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 304 --------T-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp --------C-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred --------C-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 1 12234899999 889888877 67899996554 5543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.3e-17 Score=193.45 Aligned_cols=329 Identities=9% Similarity=0.070 Sum_probs=207.7
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCC-----CeEEEEEecCCCEEEEEECCCcEEEeeccC
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQTATHKLWKWQS 419 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~-----~V~~v~fspdg~~L~s~s~dg~i~iWd~~~ 419 (737)
+.|+|||++++++ |++|++|++.+ +.+..+ +.+ |.. ....++|||||++|++++.++++ |...
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~r~~- 89 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEY----GNSSVF-LEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQ--WRHS- 89 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTT----CCEEEE-ECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEEC--SSSC-
T ss_pred cEECCCCcEEEEc--CCcEEEEECCC----CceEEE-Eec--hhhhhhcccccceEECCCCCEEEEEECCeee--EEEc-
Confidence 3499999999886 99999999984 555554 555 432 23458999999999999876443 2100
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEec-CCCCCe-
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NPPPIA- 495 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v- 495 (737)
......+||..++.+.... .|...+..++|| |+.||.+.++.|++|++.+++..+... ++...+
T Consensus 90 ---------~~~~~~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 90 ---------YTASYDIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp ---------EEEEEEEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred ---------cceEEEEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCcccee
Confidence 0011235666666654422 467789999999 899999999999999999887654322 332222
Q ss_pred ----------------EEEEEcCCC-eEEEEECCC------------------------------------eEEEEecCC
Q 004683 496 ----------------TYFILLPQD-LFAFGFDDS------------------------------------SILVHCPCT 522 (737)
Q Consensus 496 ----------------~~~~~s~~~-~l~sgs~dg------------------------------------~I~vwd~~~ 522 (737)
..+.||||| .||.++.|. .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 348999999 888775321 588899988
Q ss_pred ---Cc--EEEEEc------CCCcceEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCc----eeeceeeeecccCCCCC
Q 004683 523 ---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFLHSFQTGLVPE 583 (737)
Q Consensus 523 ---~~--~~~~l~------~~~~~v~~l~~sp~g~~l~s~s~----dg~I~lwdl~~~~----~~~~~~~~~~~~~~~~~ 583 (737)
++ ....+. +|...+..++|+|||+.++.... +..|++||+.+++ +.....+ +..++.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l--~~~~~~-- 313 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH--IEMSTT-- 313 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE--EEECSS--
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe--eeccCC--
Confidence 73 233343 37788999999999997665543 2369999998865 2211111 112232
Q ss_pred CCCe-----EEEEEecCCCEEE-E-E-ec--CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 004683 584 TTIV-----NHIQFHPDQIHLL-S-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----- 648 (737)
Q Consensus 584 ~~~v-----~~l~~sp~g~~l~-~-~-~d--g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d----- 648 (737)
..+ ..++|+|||+.++ . + .+ ..|++||..++... .+.. ....+..+. ++|++.|+..+..
T Consensus 314 -~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~--g~~~v~~~~-~~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 314 -GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK--GTWEVIGIE-ALTSDYLYYISNEYKGMP 388 (740)
T ss_dssp -SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC--SSSCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred -ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc--CCEEEEEEE-EEeCCEEEEEEecCCCCC
Confidence 233 3788999999877 4 4 33 36899999776654 3332 144566554 2556666544332
Q ss_pred C--eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC---CcEEEEecCCCc
Q 004683 649 G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESE 713 (737)
Q Consensus 649 g--~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D---g~V~iWd~~~~~ 713 (737)
+ .|+..++.++.....+.... .+. .... ..+.|+| ++.+++..... ..+.+++..+++
T Consensus 389 ~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~--~~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 389 GGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQY--YSVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp TCBEEEEEETTEEEEEEESSTTT---STT-TBCB--EEEEECT-TSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred ceeEEEEEECCCCCcceeecccc---CCC-CCce--EEEEECC-CCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 45555555444332332110 010 1223 3899999 77776644433 367777776654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.6e-16 Score=169.75 Aligned_cols=282 Identities=7% Similarity=0.022 Sum_probs=179.6
Q ss_pred EEEEecC--CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeecc-CCccccccccee
Q 004683 354 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN 430 (737)
Q Consensus 354 la~~s~d--g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~-~~~~~~g~~~~~ 430 (737)
+++|+.. +.|.+|+++.. .+..........++...+..++|+|||++|++++.+ .|.+|++. ++
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~--~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---------- 71 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDE--KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---------- 71 (365)
T ss_dssp EEEEESSSSCEEEEEEEETT--TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT----------
T ss_pred EEEEEccCCCcEEEEEEECC--CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC----------
Confidence 4455543 46877776532 343332211000024568899999999999999888 89999875 22
Q ss_pred eeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE--EEEE--------------eCCeEEEEECC-CCcEEEEec--
Q 004683 431 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA-- 489 (737)
Q Consensus 431 ~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~--l~s~--------------sdg~i~vwd~~-~~~~~~~~~-- 489 (737)
.+........+ +.+.+++|+ |++ ++++ .+|.+.+|++. +++....+.
T Consensus 72 -----------~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~ 139 (365)
T 1jof_A 72 -----------EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp -----------EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred -----------CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence 11110000001 123446777 553 4443 36889999997 466554443
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEEC-CCeEEEEecC-CCcEE--EEEc--CCCcceEEEEEeCCCCEEEEEeC-CCcEEE
Q 004683 490 --NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV 559 (737)
Q Consensus 490 --~~~~~v~~~~~s~~~-~l~sgs~-dg~I~vwd~~-~~~~~--~~l~--~~~~~v~~l~~sp~g~~l~s~s~-dg~I~l 559 (737)
.+...+.+++|+|+| ++++++. ++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 245678999999999 7777664 6799999998 77653 3333 23567899999999999888775 689999
Q ss_pred EeCC--CCceee-ceeeeecccCCCCCCC------CeEEEE-EecCCCEEEEE--ecC-----cEEEEeCC-CCceeEEe
Q 004683 560 WDAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQL 621 (737)
Q Consensus 560 wdl~--~~~~~~-~~~~~~~~~~~~~~~~------~v~~l~-~sp~g~~l~~~--~dg-----~I~iwd~~-~~~~~~~~ 621 (737)
|++. +++... ...+..++.+...+.. .+..++ |+|+|++|+++ .++ .|.+|++. +++.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 9875 333211 1112222222110001 488999 99999998874 233 89999996 56654311
Q ss_pred c-CCCCCCCeEEEEEcc---CCCEEEEEecC-CeEEEEEcCCCe
Q 004683 622 V-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 660 (737)
Q Consensus 622 ~-~~~h~~~v~~~~~sp---~~~~l~sgs~d-g~I~vwd~~~~~ 660 (737)
. ...+...+..++|+| ||++|++++.+ +.|.+|++....
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 0 111234566789999 89999998875 899999998763
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=9.6e-18 Score=183.28 Aligned_cols=250 Identities=13% Similarity=0.119 Sum_probs=169.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCC----------cEEEEe-----cCCCCCeEEEEEcCCC-eEE----E
Q 004683 452 PKDSISCFALR--GSHLFSAS-GGKISIFSLETF----------QTLATF-----ANPPPIATYFILLPQD-LFA----F 508 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~----------~~~~~~-----~~~~~~v~~~~~s~~~-~l~----s 508 (737)
+...++.++++ +.++++++ ++ +++|+.... ..+... ..+...|.+++|+|++ +|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34457788888 78888888 55 899875311 111111 1345679999999999 888 7
Q ss_pred EECCCeEEEEecCCC--------c---EEEEEcCCCcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeec
Q 004683 509 GFDDSSILVHCPCTK--------K---TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 509 gs~dg~I~vwd~~~~--------~---~~~~l~~~~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~ 576 (737)
|+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.++++++.||+|++||++++.. +. .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~-~ 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VC-A 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EE-E
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----ee-e
Confidence 888999999998754 1 24566779999999999997 88999999999999999998522 21 1
Q ss_pred ccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCC-----CCCCeEEEEEccCCCEEEE-EecCC
Q 004683 577 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYV-SCKSG 649 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~l~s-gs~dg 649 (737)
..+|. ..|.+++|+|+|++|++ +.||.|++||.+ ++....+..+. |...|.+++|++++.++++ ++.||
T Consensus 188 ~~~~~---~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 188 TLPST---VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EECGG---GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred ccCCC---CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 22344 68999999999999998 589999999998 66655554321 2347999999999888865 33443
Q ss_pred ------eEEEEEcCCCe-----eEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE-CCCcEEEEecCCCceee
Q 004683 650 ------HVKVFDTSTLE-----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEW 716 (737)
Q Consensus 650 ------~I~vwd~~~~~-----~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~V~iWd~~~~~~~w 716 (737)
.+++|++.+.+ ....+....+...+.... .+ .+.+.+ +.+++++++ ..+.|.|.........|
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~--~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~ 338 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH-HY--YLSYIE-EWDLVLAASAASTEVSILARQSDQINW 338 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC-CE--EEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCE
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc-ce--eeehhc-cCCEEEEecCCCCceeEEEecCCCCcc
Confidence 38999998652 112222211211121122 11 344556 556555444 45567777765433345
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.8e-16 Score=169.36 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=166.6
Q ss_pred CCCeEEEEEe--CCEEEEEeCCeEEEEECC-CCcEEEEecC-CCCCeEEEEEcCCC-e-E-EEEE-------------CC
Q 004683 453 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L-F-AFGF-------------DD 512 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~sdg~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~-~-l-~sgs-------------~d 512 (737)
...+..++|+ |++|++++.+.|.+|++. +++....... ..+.+.+++|+|+| . + ++++ .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3467789999 888888883499999997 7776543321 11235568999999 5 3 3442 68
Q ss_pred CeEEEEecC-CCcEEEEEc----CCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCC-CCceeeceeeeecccCCCCCCC
Q 004683 513 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 513 g~I~vwd~~-~~~~~~~l~----~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~-~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
+.+.+|++. +++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++......+. ... +. .
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~-~g---~ 193 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APD-PG---D 193 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS-TT---C
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC-CC---C
Confidence 999999997 466554443 24567999999999998887764 6799999998 55432111111 111 12 4
Q ss_pred CeEEEEEecCCCEEEEE--ecCcEEEEeCC--CCcee---EEecC-C----CCCC------CeEEEE-EccCCCEEEEEe
Q 004683 586 IVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLVP-D----KMDL------PITYAT-YSCDGKCIYVSC 646 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~--~dg~I~iwd~~--~~~~~---~~~~~-~----~h~~------~v~~~~-~sp~~~~l~sgs 646 (737)
.+..++|+|+|++++++ .++.|.+|++. +++.. ..+.. . .+.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 68899999999998874 46899999765 56542 12221 1 1111 488999 999999988766
Q ss_pred cC-C-----eEEEEEcC-CCeeEEEEecccccCCCCccCceeeEEEEEccC--CCCEEEEEECC-CcEEEEecCCC
Q 004683 647 KS-G-----HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 712 (737)
Q Consensus 647 ~d-g-----~I~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~D-g~V~iWd~~~~ 712 (737)
.+ + .|.+|++. +++......... .+ ..... .++|+|. |+++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 43 2 89999996 676543211000 00 11122 6889995 48888888764 89999999765
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=2.4e-17 Score=177.20 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=176.2
Q ss_pred ccCCCCCEEEEEec-CCe--EEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 346 TSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 346 ~~spdg~~la~~s~-dg~--v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.|+|||+++++++. ++. |.+|++.+ +...++ ..+ |...+..++|||||++|+.++.++.+.+||+.++..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~l-t~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNT----QVATQL-TEG--RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----CEEEEC-CCS--SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCC----CceEEe-eeC--CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 49999999999998 664 77778763 555554 333 555566788999999999999999999998775322
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE--e--CCEEEEE----------------------e-CCeEE
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKIS 475 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~--s--~~~l~s~----------------------s-dg~i~ 475 (737)
. .++. .+...+....| + +.+++.. . ++.|+
T Consensus 115 -----~-----~~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 115 -----N-----VVYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp -----E-----EEEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred -----e-----eeee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 0 1111 23333433333 4 5666532 2 46899
Q ss_pred EEECCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEECC------CeEEEEecCCCcEEEEEcCCC--cceEEEEEeCCC
Q 004683 476 IFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSL 545 (737)
Q Consensus 476 vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~d------g~I~vwd~~~~~~~~~l~~~~--~~v~~l~~sp~g 545 (737)
+||+.+++.... ..+...+..+.|+| || .|+.++.+ ..|.++|..++.. ..+..+. ..+..++|+|||
T Consensus 172 ~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 172 RVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS
T ss_pred EEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC
Confidence 999998865444 34556789999999 99 77776653 3788888876554 3444343 357889999999
Q ss_pred CEEEEEeCC-C----cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE----------ecCcEEEE
Q 004683 546 NVLVSSGAD-A----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVY 610 (737)
Q Consensus 546 ~~l~s~s~d-g----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~----------~dg~I~iw 610 (737)
+.|+..+.+ + .|++||+.+++... +.... ++.........++|+|+|+.|+.. .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQ---LTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEE---EEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEE---EEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 977665432 2 39999999865322 21111 100000001123799999988852 24589999
Q ss_pred eCCCCceeEEecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCeEEEEEc
Q 004683 611 EAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFDT 656 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~l~sgs~-dg~I~vwd~ 656 (737)
|+.+++.. .+.. +.. .+.+++|+|||+.|+.++. +|...||.+
T Consensus 326 d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 326 NMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 99887653 3332 122 4778999999998886654 566656544
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.9e-17 Score=191.00 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=190.2
Q ss_pred cccccCCCCCEEEEEec---------CCeEEEeecCccCCCCce---eeeecCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 004683 343 RESTSLPDADSAVCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 410 (737)
Q Consensus 343 ~~~~~spdg~~la~~s~---------dg~v~iW~~~~~~~~~~~---~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg 410 (737)
....+||||++|++++. ++++++||+.+ +.+ .. + ...+..++|||||++|++++ ++
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~--l-----~~~~~~~~~SPDG~~la~~~-~~ 130 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNE--L-----PRPIQYLCWSPVGSKLAYVY-QN 130 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECCSSC--C-----CSSBCCEEECSSTTCEEEEE-TT
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----Ccccccee--c-----CcccccceECCCCCEEEEEE-CC
Confidence 34559999999999987 78999999985 443 22 2 34688999999999999886 78
Q ss_pred cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCC---------eEEEEEe--CCEEEEEe-CC------
Q 004683 411 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS---------ISCFALR--GSHLFSAS-GG------ 472 (737)
Q Consensus 411 ~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~---------V~~v~~s--~~~l~s~s-dg------ 472 (737)
.|++|++.++.. . .+. .+.....+.. ++... ..+++|+ |++|++++ |.
T Consensus 131 ~i~~~~~~~g~~-----~-~l~---~~~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~ 196 (719)
T 1z68_A 131 NIYLKQRPGDPP-----F-QIT---FNGRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI 196 (719)
T ss_dssp EEEEESSTTSCC-----E-ECC---CCCBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE
T ss_pred eEEEEeCCCCCc-----E-EEe---cCCCcCCeEc-----ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE
Confidence 999998875432 0 000 0000000000 22222 2479999 88999887 42
Q ss_pred ----------------------------eEEEEECCCCcEE---E-----EecCCCCCeEEEEEcCCC-eEEEEECC---
Q 004683 473 ----------------------------KISIFSLETFQTL---A-----TFANPPPIATYFILLPQD-LFAFGFDD--- 512 (737)
Q Consensus 473 ----------------------------~i~vwd~~~~~~~---~-----~~~~~~~~v~~~~~s~~~-~l~sgs~d--- 512 (737)
.|++||+.+++.. . .+.+|...+.+++|+||+ .+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 197 AYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN 276 (719)
T ss_dssp EEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred EeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence 7889999988753 1 123577789999999999 76664433
Q ss_pred -CeEEEEe----cCCCcEEEEE----cCCCcceE-----EEEEeCCCCEEEE--EeCCC--cEEEEeCCCCceeeceeee
Q 004683 513 -SSILVHC----PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 513 -g~I~vwd----~~~~~~~~~l----~~~~~~v~-----~l~~sp~g~~l~s--~s~dg--~I~lwdl~~~~~~~~~~~~ 574 (737)
..|.+|| +.++++...+ .+|...+. .+.|+|||+.++. +..+| .|.+||+.++. ..
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------~~ 350 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------AI 350 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------CE
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------eE
Confidence 2588999 8777665444 35666666 8899999996554 44555 57777877643 12
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEE-Eec-----CcEEEEeCCC--Cc-eeEEecC--CCCCCCeEEEEEccCCCEEE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d-----g~I~iwd~~~--~~-~~~~~~~--~~h~~~v~~~~~sp~~~~l~ 643 (737)
.+..+ . ..+..+.++ +++.++. +.+ +.+++|.+.. +. ....+.. ..+...+..+.|+|++++++
T Consensus 351 ~lt~~-~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 351 QITSG-K---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp ECSCS-S---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred ecccC-c---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 12222 2 457787878 8887776 543 7788887653 32 1233321 11356788999999998777
Q ss_pred E-EecC--CeEEEEEcCCCeeEEEEe
Q 004683 644 V-SCKS--GHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 644 s-gs~d--g~I~vwd~~~~~~~~~~~ 666 (737)
. ++.+ ..+++||+.+++....+.
T Consensus 426 ~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 426 LVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EEcCCCCCCeEEEEECCCCCEEEEee
Confidence 4 3333 578999998888665554
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.7e-16 Score=184.22 Aligned_cols=250 Identities=12% Similarity=0.134 Sum_probs=165.5
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
.....+++|+|||++++++ |++|++||+.++.. . .+....+. ..+......++|| |++
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----~-----~~~~~~~~--------~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----S-----VFLENSTF--------DEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----E-----EEECTTTT--------TTCCSCCCEEEECTTSSE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCce-----E-----EEEechhh--------hhhcccccceEECCCCCE
Confidence 3456789999999988886 89999998775432 0 01110000 0111223457889 888
Q ss_pred EEEEe-C---------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE-cCCC
Q 004683 466 LFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQ 533 (737)
Q Consensus 466 l~s~s-d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l-~~~~ 533 (737)
|+.++ + +.+.+||+.+++.. .+..+...+...+||||| .||.+. ++.|++||+.+++..+.- .++.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence 88887 4 67789999988754 466777889999999999 888875 789999999888755421 2232
Q ss_pred cce-----------------EEEEEeCCCCEEEEEeCCC------------------------------------cEEEE
Q 004683 534 NRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCVW 560 (737)
Q Consensus 534 ~~v-----------------~~l~~sp~g~~l~s~s~dg------------------------------------~I~lw 560 (737)
..+ ..+.|||||+.|+.++.|. .|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 222 3589999999999876432 47778
Q ss_pred eCCC---Cceeeceeeeecc---cCCCCCCCCeEEEEEecCCCEEEE-Ee----cCcEEEEeCCCCc----ee--EEecC
Q 004683 561 DAVG---WKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN----HT--SQLVP 623 (737)
Q Consensus 561 dl~~---~~~~~~~~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~-~~----dg~I~iwd~~~~~----~~--~~~~~ 623 (737)
|+.+ ++......+. .+ .++. ..+..++|+|||+.++. .. +..|++||+.+++ +. ..+..
T Consensus 234 d~~~~~~~~~~~~~~l~-~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQIT-APASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp ETTSCCSSSCCCEEEEC-CCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred ECCCCCCCCcceEEEec-CCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 8876 5211111111 00 0233 57899999999997665 32 2369999999887 22 12211
Q ss_pred CCCCCCeE-----EEEEccCCCEEE-EEecC---CeEEEEEcCCCeeEE
Q 004683 624 DKMDLPIT-----YATYSCDGKCIY-VSCKS---GHVKVFDTSTLELRC 663 (737)
Q Consensus 624 ~~h~~~v~-----~~~~sp~~~~l~-sgs~d---g~I~vwd~~~~~~~~ 663 (737)
..+...+. .++|+|||+.++ ..+.+ ..|++||+.+++...
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 12344443 788999999877 66543 468889998876543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=1.6e-15 Score=161.45 Aligned_cols=298 Identities=14% Similarity=0.105 Sum_probs=197.5
Q ss_pred CCCCEEEEEe------cCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcE
Q 004683 349 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 412 (737)
Q Consensus 349 pdg~~la~~s------~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~----------dg~i 412 (737)
|+++++.+.. .|+.|.+||... ++.... ++. +..+ .++|||||+++++++. +++|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t----~~~~~~-i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN----GKFLGM-VPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT----CCEEEE-EEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC----CeEEEE-ecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 5667666653 378999999874 333332 443 3333 8999999999999873 5678
Q ss_pred EEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEEEE
Q 004683 413 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT 487 (737)
Q Consensus 413 ~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~~~ 487 (737)
.+||..+.+. ...+. ...+. ..+......++++ |++|+++. ++.|.+||+.+++.+..
T Consensus 84 ~v~d~~t~~~-----~~~i~-----~~~~~-------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 84 EVWDADKLTF-----EKEIS-----LPPKR-------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTCCE-----EEEEE-----ECTTB-------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEECcCCcE-----EEEEE-----cCccc-------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 8887653221 11110 00000 0123445678898 88888876 47899999999988887
Q ss_pred -ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-CcEEEEE------cCCCcceEEEEEeCCCCEEEEEeCCCcE
Q 004683 488 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKL------KGHQNRITCLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 488 -~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~-~~~~~~l------~~~~~~v~~l~~sp~g~~l~s~s~dg~I 557 (737)
+... ....+.+.|++ .+++.+.||.+.+|+... ++..... .....++ .+.+++++..++..+.++.|
T Consensus 147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 5432 22335678877 788889999999999865 5544221 1122222 33446778888888889999
Q ss_pred EEEeCCCCceeeceeee--e---cccCCCCCCCCeEEEEEecCCCEEEEE-e-----------cCcEEEEeCCCCceeEE
Q 004683 558 CVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~--~---~~~~~~~~~~~v~~l~~sp~g~~l~~~-~-----------dg~I~iwd~~~~~~~~~ 620 (737)
.++|+............ . ...+..+ .....++++|+++.++++ . .+.|.+||+.+++.+.+
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCceecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 99999754321111111 0 0000000 112237899998888774 3 24799999999999999
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC--eeEEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
+..+ . +.+++|+|||++|++++. +.|.+||..++ +.+..+... | ..+..++++| +|.
T Consensus 302 i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 302 IPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C-----SSEEEEEECC-CSC
T ss_pred EecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C-----CCcEEEEecC-CCC
Confidence 8763 3 899999999999999887 99999999999 888876422 2 2244789999 553
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=1.2e-14 Score=149.24 Aligned_cols=239 Identities=10% Similarity=0.062 Sum_probs=175.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecC------CCCCeEEEEE-cCCC-eEEEEEC-CCeEEEE
Q 004683 451 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 518 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~-s~~~-~l~sgs~-dg~I~vw 518 (737)
++-..+.+++++ ++++++.. ++.|.+||.. ++.+..+.. +...+..+++ .+++ .+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678899998 77777766 8999999987 666666642 3356889999 4677 5554433 8899999
Q ss_pred ecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc-CCCCCCCCeEEEEEecCC
Q 004683 519 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 519 d~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g 596 (737)
| .+++.+..+.. +...+.+++++|+|+.+++...++.|.+||.... .+..+.. .+. ..+..++++|+|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------EEEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777776643 3457899999999998888778899999997642 1221211 222 468899999999
Q ss_pred CEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEEcCCCeeEEEEecccccCCC
Q 004683 597 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 674 (737)
Q Consensus 597 ~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg-~I~vwd~~~~~~~~~~~~~~~~~~g 674 (737)
+.+++. .++.|++||. +++.+..+....+...+.+++++++|+++++...++ .|.+|+. +++.+..+..+
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------ 247 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------ 247 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence 877765 6889999998 566666665433346789999999999888888776 9999995 46666665432
Q ss_pred CccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 675 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 675 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.....+.+++++| ++.++++ +.|++|++|++...
T Consensus 248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112345899999 7887777 57999999998653
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.4e-16 Score=171.57 Aligned_cols=280 Identities=11% Similarity=0.034 Sum_probs=179.3
Q ss_pred CeEEEEEecCCCEEEEEECC-C--cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 390 RVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 390 ~V~~v~fspdg~~L~s~s~d-g--~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
.+..++|||||++|+.++.. + .|.+|+ ..++....... ++......+.|+ |+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d---------------------~~~~~~~~l~~--~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLN---------------------LETQQAVQLTE--GKGDNTFGGFISTDER 93 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEE---------------------TTTTEEEECCC--SSCBCTTTCEECTTSS
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEE---------------------CCCCcEEEeec--CCCCccccceECCCCC
Confidence 37789999999998887653 3 454444 34444332211 122222236788 88
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEE-------------------EEEcCCC-eEEEE-----ECCCeEEEE
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILVH 518 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~-~l~sg-----s~dg~I~vw 518 (737)
+|+.++ ++.|++||+.+++.......+...... +.|+|++ .++.+ ..+..|++|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 898888 789999999988876666545443222 3567777 54433 456789999
Q ss_pred ecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCC------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEE
Q 004683 519 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 591 (737)
Q Consensus 519 d~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~d------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 591 (737)
|+.+++..... .+...+..+.|+| +++.++..+.+ ..|.+||+.++.. ..+...... ..+..++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~~~~~~--~~~~~~~ 244 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV------RKIKEHAEG--ESCTHEF 244 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC------EESSCCCTT--EEEEEEE
T ss_pred ECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce------eEeeccCCC--ccccceE
Confidence 99988765544 4667789999999 88877776643 3688889876321 112221100 3578899
Q ss_pred EecCCCEEEE-Eec-----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc-CCCEEEEEe----------------cC
Q 004683 592 FHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------KS 648 (737)
Q Consensus 592 ~sp~g~~l~~-~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs----------------~d 648 (737)
|+|+|+.|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999998776 433 3499999988875443322 1 133 89999 999888755 34
Q ss_pred CeEEEEEcCCCeeEEEEecccccC---CCCccCceeeEEEEEccCCCCEEEEEEC-CCcEEEEecC
Q 004683 649 GHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPL 710 (737)
Q Consensus 649 g~I~vwd~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~V~iWd~~ 710 (737)
+.|++||+.+++... +..+.... .+ ........++|+| |++.|+.++. ++...||.+.
T Consensus 320 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQK-LCKHSTSWDVLDG--DRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCCE-EEECCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceEE-ccCCCCccccccc--cccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 789999999887543 33221000 00 0000123678999 7888777664 5665666543
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=7.2e-15 Score=154.43 Aligned_cols=246 Identities=14% Similarity=0.092 Sum_probs=180.2
Q ss_pred CCCeEEEEEe--CCEEEEEe-C------------------------CeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC
Q 004683 453 KDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQD 504 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~ 504 (737)
-..+.+++++ |+++++.. + ++|.+||..+++.+..+. ++......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999 77777776 5 379999999999887765 445678899999999
Q ss_pred -eEEEEECCCeEEEEecCCCc-EEEEE---------cCCCcceEEEEEeC-CCCEEEEEe-CCCcEEEEeCCCCceeece
Q 004683 505 -LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 505 -~l~sgs~dg~I~vwd~~~~~-~~~~l---------~~~~~~v~~l~~sp-~g~~l~s~s-~dg~I~lwdl~~~~~~~~~ 571 (737)
.+++...++.|++||..... .+..+ .++-.....++++| ++.++++.+ .++.|++||... ......
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEEe
Confidence 88888889999999986542 45555 23445689999999 888888886 699999999543 221111
Q ss_pred eeeecc----cCCCCCCCCeEEEEEecC-CCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE-
Q 004683 572 FLHSFQ----TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV- 644 (737)
Q Consensus 572 ~~~~~~----~~~~~~~~~v~~l~~sp~-g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s- 644 (737)
...... .++. ..+..++++|+ +..+++. .++.|++||..+++.+..+....+...+.+++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 182 GEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp CEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred ccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 000000 0111 34889999999 5555554 77899999998899988886555677889999999 433333
Q ss_pred ------EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 645 ------SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 645 ------gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
.+.+..|++|+..+++.+..+... .+ ....+.+++++| ++.++++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 334568999999999988877421 01 112355899999 788899999999999999864
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.6e-13 Score=153.83 Aligned_cols=330 Identities=11% Similarity=0.062 Sum_probs=219.7
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
|.+..+++...+++|.++|..+ ++.... ++ ....+..+.|||||+++++++.|+.|.+||+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t----~~v~~~-i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~-------- 228 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST----YEIKTV-LD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-------- 228 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT----CCEEEE-EE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS--------
T ss_pred CCceEEEEeCCCCeEEEEECCC----CeEEEE-Ee---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence 4556777888899999999884 443332 33 2346789999999999999999999999987410
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCeEEEEECCCCcEEEEecCC---------
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP--------- 491 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~--------- 491 (737)
++..+.... .......++|+ |+++++++ +++|.++|..+.+.+..+...
T Consensus 229 -----------t~~~v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 229 -----------EPTTVAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp -----------SCCEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred -----------CCcEeEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 111111111 12234567776 67888877 699999999999998877521
Q ss_pred --CCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEE--EEEcCCCcceEEEEEeCCCCEEEEEe-CCCcEEEEeCCC
Q 004683 492 --PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG 564 (737)
Q Consensus 492 --~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~--~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I~lwdl~~ 564 (737)
...+..+..++++ .++....+|.|.++|..+.+.. ..+. .......+.|+|+|+++++++ .++.|.++|+.+
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2267888999987 6666677799999998775432 2222 334577889999999987665 578999999998
Q ss_pred CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-EE--ecCcEEEEeCCC-------CceeEEecCCCCCCCeEEEE
Q 004683 565 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~~--~dg~I~iwd~~~-------~~~~~~~~~~~h~~~v~~~~ 634 (737)
++......+- +..++.+.-.. -++|++..+. ++ .++.|.++|..+ .+.++++... ...-..+.
T Consensus 374 ~kl~~~i~vg----g~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~ 446 (567)
T 1qks_A 374 GKLVAIEDTG----GQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIK 446 (567)
T ss_dssp TEEEEEEECS----SSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEE
T ss_pred CcEEEEEecc----CcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEE
Confidence 6543332220 21111122222 2688855444 45 568999999987 6677777653 22223467
Q ss_pred EccCCCEEEEEec-------CCeEEEEEcCCC-----eeE-EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE--
Q 004683 635 YSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-- 699 (737)
Q Consensus 635 ~sp~~~~l~sgs~-------dg~I~vwd~~~~-----~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-- 699 (737)
.+|+++++++... .++|.|+|+.+. ... ..+........+ .....+..+.|+| +|+.+..+.
T Consensus 447 ~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~G~~~~~s~~~ 523 (567)
T 1qks_A 447 THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNK-DGTEVWFSVWN 523 (567)
T ss_dssp CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECT-TSSEEEEEEEC
T ss_pred eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC--CCCcceEeeeECC-CCCEEEEEeec
Confidence 8999999998763 369999999877 211 233210000001 1123455899999 677655442
Q ss_pred ---CCCcEEEEecCCCceeeeec
Q 004683 700 ---TNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 700 ---~Dg~V~iWd~~~~~~~w~~~ 719 (737)
.++.|.|+|..+.+.+-...
T Consensus 524 ~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 524 GKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCcEEEEECCCceEEEEeC
Confidence 37999999999998765554
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=4.1e-14 Score=145.19 Aligned_cols=242 Identities=10% Similarity=0.089 Sum_probs=175.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe---C
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s---~ 463 (737)
|-..+.+++++|+|.++++.+.++.|.+|+.... ... .+.. .+ ...++...+.++++. +
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~------~~~-----~~~~-~~------~~~~~~~~p~~i~~~~~~g 89 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR------FKF-----QFGE-CG------KRDSQLLYPNRVAVVRNSG 89 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC------EEE-----EECC-BS------SSTTCBSSEEEEEEETTTT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCc------EEE-----Eecc-cC------CCcccccCceEEEEEcCCC
Confidence 5677999999999998888888999999986521 110 1110 00 001345678899994 5
Q ss_pred CEEEEEe--CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc--CCCcceE
Q 004683 464 SHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT 537 (737)
Q Consensus 464 ~~l~s~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~--~~~~~v~ 537 (737)
+++++.. ++.|.+|| .+++.+..+. .+...+.+++++|+| .+++...++.|.+||.. ++.+..+. .+...+.
T Consensus 90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 5555553 78999999 5677777775 344578999999999 77777778999999964 56666664 3445689
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc-cCCCCCCCCeEEEEEecCCCEEEEE-ecC-cEEEEeCCC
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPT 614 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~~-~dg-~I~iwd~~~ 614 (737)
+++++|+|+.+++.+.++.|++||.... .+..+. .++. ..+..++++|+|+.+++. .++ .|.+||. +
T Consensus 168 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 9999999998888788999999998652 222122 1222 468899999999888875 555 9999996 5
Q ss_pred CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 615 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 615 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
++.+..+........+.+++++|+|+++++ +.|++|++|+....
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 777777655333445889999999987776 57999999998654
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=2e-15 Score=162.37 Aligned_cols=282 Identities=9% Similarity=0.001 Sum_probs=173.2
Q ss_pred cccCCCCCEEEEEecC---CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCc
Q 004683 345 STSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 421 (737)
Q Consensus 345 ~~~spdg~~la~~s~d---g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~ 421 (737)
..++|||++++..+.. ..+.+|++.+ +....+ ..+ +......+.|||||++|+.++.++.|.+|++.++.
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~----~~~~~l-~~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET----QQAVQL-TEG--KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT----TEEEEC-CCS--SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCC----CcEEEe-ecC--CCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 3499999999888654 3577888774 444443 222 22223348899999999999999999999877543
Q ss_pred ccccccceeeeeEEeecCCCeeee--eccCCCCCCCeE-----EEEEe--CCEEEEE-----e-CCeEEEEECCCCcEEE
Q 004683 422 QSLEEENVNMESQLYQPSSKLVMT--NDIAADPKDSIS-----CFALR--GSHLFSA-----S-GGKISIFSLETFQTLA 486 (737)
Q Consensus 422 ~~~g~~~~~~~~~l~~~~~~~~~~--~~~~~~h~~~V~-----~v~~s--~~~l~s~-----s-dg~i~vwd~~~~~~~~ 486 (737)
. . .+.....+.... .+.. ....... .+.|+ ++.++.+ . +..|++||+.+++...
T Consensus 114 ~-----~-----~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 114 E-----Q-----VIYTVDEEWKGYGTWVAN-SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp E-----E-----EEEECCTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred c-----E-----EEEecccccCCCCCEEEe-ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 2 0 111111000000 0000 0000000 01233 4433332 2 5689999999887655
Q ss_pred EecCCCCCeEEEEEcC-CC-eEEEEECC------CeEEEEecCCCcEEEEEcCC--CcceEEEEEeCCCCEEEEEeCC--
Q 004683 487 TFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGAD-- 554 (737)
Q Consensus 487 ~~~~~~~~v~~~~~s~-~~-~l~sgs~d------g~I~vwd~~~~~~~~~l~~~--~~~v~~l~~sp~g~~l~s~s~d-- 554 (737)
.. .+...+..+.|+| ++ .|+..+.+ ..|.+||+.+++... +..+ ...+..++|+|+|+.|+.++.+
T Consensus 183 ~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 183 IH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred ec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCC
Confidence 54 4566788999999 77 67766543 368899987665433 3323 2357889999999988777654
Q ss_pred ---CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEec-CCCEEEEE-----------------ecCcEEEEeCC
Q 004683 555 ---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-----------------HEGQIDVYEAP 613 (737)
Q Consensus 555 ---g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~-----------------~dg~I~iwd~~ 613 (737)
+.|++||+.+++... +. .. .... +.|+| +|++++++ .++.|++||+.
T Consensus 261 ~~~~~l~~~d~~~g~~~~---l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEE---VM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TCCEEEEEECTTTCCEEE---EE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CccceEEEEECCCCCeEE---ee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 449999998754211 11 11 1223 89999 99988763 23689999998
Q ss_pred CCceeEEecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCe--EEEEEcCCCee
Q 004683 614 TLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLEL 661 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~l~sgs~-dg~--I~vwd~~~~~~ 661 (737)
+++.. .+... .. .+..++|+|||+.|+.++. ++. |+++++.+++.
T Consensus 329 ~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 329 AKSAQ-KLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTBCC-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cCceE-EccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 87653 33221 22 2567899999998887665 444 55555566543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=6.4e-15 Score=170.38 Aligned_cols=283 Identities=11% Similarity=0.000 Sum_probs=183.4
Q ss_pred CCCCeEEEEEecCCCEEEEE--ECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-------
Q 004683 387 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------- 457 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~--s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~------- 457 (737)
|...|..++|++++-++++. +.++...||....+ +.... +. .+...+.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~-l~--~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------------------GAEES-AL--PAPWNVRNRVFEYS 78 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------------------SCEEE-SS--CTTCCBCCCGGGTC
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------------------CCcce-eC--CCCccccccccccC
Confidence 78899999999987777777 45788999975321 11111 01 1222222
Q ss_pred --EEEEe----CCE-EEEEe--CCeEEEEECC--CCcEEEEecC-----CCCCeEEEEEcCCC-eEEEEECC--------
Q 004683 458 --CFALR----GSH-LFSAS--GGKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD-------- 512 (737)
Q Consensus 458 --~v~~s----~~~-l~s~s--dg~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~-~l~sgs~d-------- 512 (737)
...|+ |+. |+.++ +..|+++++. +......+.. |...+.+++|+||| .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 33333 777 77666 4667777765 2033455554 56678899999999 88888876
Q ss_pred --CeEEEEecCC------CcEEEEEc-CCCcceEEEEEeCCCCEEEEEeCCC--------cEEEEeCC-CCceeeceeee
Q 004683 513 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADA--------QLCVWDAV-GWKKLCSKFLH 574 (737)
Q Consensus 513 --g~I~vwd~~~------~~~~~~l~-~~~~~v~~l~~sp~g~~l~s~s~dg--------~I~lwdl~-~~~~~~~~~~~ 574 (737)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|++||+. ++... ...
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~ 234 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR 234 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence 5899999988 554 4455 5567788899999999999887553 79999998 44211 112
Q ss_pred ecccCCCCCCCCeEEEEEecCCCEEEEE-ecC--cEEEEeCCCCceeEEecCCCCCCC--------eEEEEEccCCCEEE
Q 004683 575 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLP--------ITYATYSCDGKCIY 643 (737)
Q Consensus 575 ~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg--~I~iwd~~~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~l~ 643 (737)
.+..++. ..+..++|+|||++++++ .++ .|++||+.+++....... +... +.+++|+|++++++
T Consensus 235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEE
Confidence 2333333 578999999999966665 556 678888767765433321 1111 56789999999999
Q ss_pred EEecCCeEEEE--EcCCCeeEEEEecccccCCCCccCceeeEEE-EEccCCCCEEEEEECCC--cEEEEecCCCce
Q 004683 644 VSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 714 (737)
Q Consensus 644 sgs~dg~I~vw--d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~las~s~Dg--~V~iWd~~~~~~ 714 (737)
+++. +.++|| |..+++ ...+..+ ...+. .+ ++++ +.-++++++.+. .|.+|++.+++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~--------~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGP--------WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSS--------CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCC--------CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 9998 999999 656665 4444321 22233 44 4443 333444555554 455556666653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.8e-14 Score=149.95 Aligned_cols=260 Identities=11% Similarity=0.001 Sum_probs=182.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc---cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE---ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 462 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~---~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 462 (737)
-+.|.+++++|+|+.+++.+.++.+.+++.......... ....-.+.+||..++.+..... .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 467999999999999988888866555444322210000 0011134678887777765332 1345678899999
Q ss_pred CCEEEEEe-CCeEEEEECCCCc-EEEEe---------cCCCCCeEEEEEcC-CC-eEEEEE-CCCeEEEEecCCCcEEEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~s~-~~-~l~sgs-~dg~I~vwd~~~~~~~~~ 528 (737)
|+++++.. ++.|++||..... .+..+ .++......++++| ++ .+++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77777766 7999999986442 45555 23444688999999 67 666665 689999999 56777777
Q ss_pred EcCC----------CcceEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecc-cCCCCCCCCeEEEEEecCC
Q 004683 529 LKGH----------QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ 596 (737)
Q Consensus 529 l~~~----------~~~v~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g 596 (737)
+... -.....++++|+ +.++++...++.|++||..+++... .+. ..+. ..+..++++| +
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-----~~~~~~~~---~~~~~~~~~p-g 251 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-----EIKHASFG---RNVFAISYIP-G 251 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----EECCTTTT---TCEEEEEEET-T
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-----EEeccccC---CCcceeeecC-C
Confidence 6432 234889999998 7777777788999999998654322 221 1222 5688999999 4
Q ss_pred CEEEE-E-------ecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 597 IHLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 597 ~~l~~-~-------~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
..+++ + .+..|++||..+++.+..+.. ..+...+.+++++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333 2 234899999999999888742 13467799999999998888888899999999764
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=4.3e-14 Score=144.22 Aligned_cols=252 Identities=9% Similarity=-0.000 Sum_probs=191.8
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC-CcceEE
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 538 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~-~~~v~~ 538 (737)
++.|++++ ++.|++||.++|+.+.++..+. ..+.++.++|+| .++ +.++.|..||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 56788888 8999999999999999998765 478899999999 666 45788999998 89999888764 357889
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCc
Q 004683 539 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 616 (737)
Q Consensus 539 l~~sp~g~~l~s~s~-dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~ 616 (737)
+.+.++|+++++.+. ++.|..+|.. ++......+..-...+. .....+++.++|+++++. .++.|..||.. |+
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 999999999999887 7788888864 44333322221001111 245567889999999985 78999999997 99
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
.+.++.. ...+.++.+.++|+.+++++.++.|..+|..+|+.+..+..... .+ ..-..+..++..+ ++.+++
T Consensus 157 ~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~--~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 157 LLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EG--VQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp EEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BS--CCCSEEEEEEECT-TSCEEE
T ss_pred EEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CC--ccccccccceEcC-CCCEEE
Confidence 9888865 24566788889999999999899999999999999999864211 01 0123356888888 788888
Q ss_pred EEECC--------CcEEEEec-CCCceeeeecCCCCCCCccCC
Q 004683 697 LGLTN--------GRVHVIEP-LESEVEWGKLPFTDSREFSTT 730 (737)
Q Consensus 697 s~s~D--------g~V~iWd~-~~~~~~w~~~~~~~~g~~s~~ 730 (737)
+.... +..+++++ .+++..|......+-|.+|.+
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 87421 24467777 578889999888888887765
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=4.3e-14 Score=148.39 Aligned_cols=240 Identities=10% Similarity=0.042 Sum_probs=173.8
Q ss_pred CCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 454 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 454 ~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
.....+++. ++.+++.. ++.|.+||..+++.+.++.. ......+++++++ .+++...++.|.+||..+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 456778888 55555555 79999999999999888853 4567899999989 55555489999999999998877765
Q ss_pred CCC-----cceEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-
Q 004683 531 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 602 (737)
Q Consensus 531 ~~~-----~~v~~l~~sp~g~~l~s~s--~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~- 602 (737)
... .....+++ . +..++++. .++.|.+||+.+++... ++..+ .....++++|+|++++++
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~-----~i~~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD-----ELTIG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE-----EEECS-----SCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE-----EEEcC-----CCccceEEcCCCCEEEEEC
Confidence 432 14556777 3 44555554 48899999999854332 23333 345688999999977774
Q ss_pred ec----------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccC
Q 004683 603 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 672 (737)
Q Consensus 603 ~d----------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~ 672 (737)
.+ +.|.++|..+++....+... .......++|+|+++.++++.. .|++||..+++..... +..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 33 78999999999887776532 1346889999999999988765 8999999988753211 111
Q ss_pred CCCccCceeeEEEEEccCCCCEEEEE----ECCCcEEEEecCCCceeeee
Q 004683 673 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 673 ~g~~~~~v~~~~v~~sp~d~~~las~----s~Dg~V~iWd~~~~~~~w~~ 718 (737)
.+ .-.+.+++++|.++.++++. ..++.|.+|++. ++..+..
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 00 12245899999667777777 678999999998 8777665
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.7e-14 Score=166.82 Aligned_cols=280 Identities=9% Similarity=-0.039 Sum_probs=176.5
Q ss_pred cCCCCCEEEEE--ecCCeEEEeecCccCCCCceeeeecCCCCCCCCeE---------EEEEe--cCCCE-EEEEEC-CCc
Q 004683 347 SLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-TAT 411 (737)
Q Consensus 347 ~spdg~~la~~--s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~---------~v~fs--pdg~~-L~s~s~-dg~ 411 (737)
+++++.+++.. +.++...||.... .+.... +.. |...|. ...|+ |||++ |+.++. +..
T Consensus 31 ~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~--l~~--~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 31 AVGDEVWWVAPRPAEAGRATLVRRRA---DGAEES--ALP--APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp EETTEEEEEEEETTTTTEEEEEEECT---TSCEEE--SSC--TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred EcCCeEEEEecCcccCCcEEEEEECC---CCCcce--eCC--CCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 56666566666 4578899998643 344333 333 445555 56666 99998 776654 344
Q ss_pred EEEeeccCCcccccccceeeeeEEeecCC-CeeeeeccCC---CCCCCeEEEEEe--CCEEEEEe-C----------CeE
Q 004683 412 HKLWKWQSNKQSLEEENVNMESQLYQPSS-KLVMTNDIAA---DPKDSISCFALR--GSHLFSAS-G----------GKI 474 (737)
Q Consensus 412 i~iWd~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~~~~~---~h~~~V~~v~~s--~~~l~s~s-d----------g~i 474 (737)
|.+|+... .+ +.... +... .|...+.+++|+ |+.|++++ + ..|
T Consensus 104 l~~~~~~~-------------------~g~~~~~~-l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 104 LYAFEPDA-------------------PGGAVPRP-LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp EEEECTTS-------------------TTCCCCEE-CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred EEEEcCCC-------------------CCCCCCEe-ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 44443320 01 11111 1100 156678899999 88888887 5 589
Q ss_pred EEEECCC------CcEEEEec-CCCCCeEEEEEcCCC-eEEEEECC--------CeEEEEecC-CC---cEEEEEcCCCc
Q 004683 475 SIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKGHQN 534 (737)
Q Consensus 475 ~vwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~d--------g~I~vwd~~-~~---~~~~~l~~~~~ 534 (737)
++||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999987 554 4555 556678889999999 88877755 379999999 57 44444455678
Q ss_pred ceEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeeceeeeecccCCCCCC-----CCeEEEEEecCCCEEEEEecCcE
Q 004683 535 RITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPET-----TIVNHIQFHPDQIHLLSIHEGQI 607 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~sp~g~~l~~~~dg~I 607 (737)
.+..++|+|||+++++++.++ .|.+||+.+++.. . +..++.... ..+..++|+|+++.++++.++.+
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-----~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~ 316 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-----Q-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAA 316 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-----E-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSC
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-----e-cccccccccCccccccCceEeEeCCCEEEEEEEcCcc
Confidence 899999999999888888888 5666676554321 1 222221000 01567899999998888533888
Q ss_pred EEE--eCCCCceeEEecCCCCCCCeEEEEEccCCCE--EEEEecCC--eEEEEEcCCCeeEEE
Q 004683 608 DVY--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG--HVKVFDTSTLELRCQ 664 (737)
Q Consensus 608 ~iw--d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l~sgs~dg--~I~vwd~~~~~~~~~ 664 (737)
+|| |+.+++ +..+.. +...+..+ ++++++. +++++.+. .|++||+.+++....
T Consensus 317 ~l~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 317 VLGILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 888 665555 555544 35556655 1444443 33444443 567778778875443
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=1.1e-13 Score=145.48 Aligned_cols=272 Identities=11% Similarity=0.042 Sum_probs=183.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
...|.+++|+|++..++..+.++.++.|.-. .|. .+. .+...+.+++|+ |++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--------~~~--~~~~~~~~~~~~~~g~l 58 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAE----------------PWL--------EIS--KKGLQLEGLNFDRQGQL 58 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEE--------EEE--SSCCCEEEEEECTTSCE
T ss_pred ccccceeeecCCccceeEEeecccCcccccc----------------eeE--------EEe--ccCccccCcEECCCCCE
Confidence 3457888999998877777778888877311 011 111 355667899999 776
Q ss_pred EEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC----CeEEEEecCCCcEEEEEc--CCCcceE
Q 004683 466 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT 537 (737)
Q Consensus 466 l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d----g~I~vwd~~~~~~~~~l~--~~~~~v~ 537 (737)
++++. ++.|.+||..+++.......+...+.+++++|+| .++++..+ +.|.+||..++.....+. .+...+.
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 66776 7999999999887665554566789999999999 76666666 689999998877654443 2345789
Q ss_pred EEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEE
Q 004683 538 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV 609 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~i 609 (737)
+++++|+|+.+++... .+.|..||..+++.. . +.... ..+..++|+|+|+.++++ .++.|.+
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~---~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---P---IIQNI----SVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---E---EEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE---E---eecCC----CcccceEECCCCCEEEEEeCCCCeEEE
Confidence 9999999988776654 355666666543221 1 11111 357889999999877653 5789999
Q ss_pred EeCCC-CceeEEe------cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceee
Q 004683 610 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 682 (737)
Q Consensus 610 wd~~~-~~~~~~~------~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 682 (737)
||..+ +..+..+ .... ...+..++++++|++.++...++.|.+||. +++.+..+..... ..|+ ...+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCBC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccCc
Confidence 99964 3332211 1111 246788999999998888888899999998 4666666542200 0010 0124
Q ss_pred EEEEEccCCCCEEEEEECCC
Q 004683 683 LVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 683 ~~v~~sp~d~~~las~s~Dg 702 (737)
.+++|+| |+..|+.++.++
T Consensus 283 ~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 283 THPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CEEEECT-TSCEEEEEEECG
T ss_pred ceEEECC-CCCEEEEEeCcc
Confidence 4899999 666665555443
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=2.5e-13 Score=144.49 Aligned_cols=240 Identities=10% Similarity=-0.012 Sum_probs=164.7
Q ss_pred EEEEe--CCEEEEEe-----------CCeEEEEECCCCcEEEEecCC------CCCeEEEEEcCCC-eEEEEEC--CCeE
Q 004683 458 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD-LFAFGFD--DSSI 515 (737)
Q Consensus 458 ~v~~s--~~~l~s~s-----------dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~l~sgs~--dg~I 515 (737)
.++|+ |+++++++ ++.|.+||..+++.+..+... ......++++||| +++++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 78999 88887774 467999999999988887632 2345688999999 8877764 5799
Q ss_pred EEEecCCCcEEEE-EcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEE
Q 004683 516 LVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQF 592 (737)
Q Consensus 516 ~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 592 (737)
.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|+... ++.............. .....+.+
T Consensus 134 ~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK----DDPIFIAP 207 (361)
T ss_dssp EEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT----TSCBCSCC
T ss_pred EEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC----CCceEEEe
Confidence 9999999988877 542 2 22335677765 6788889999999999865 3222110000011111 11223445
Q ss_pred ecCCCEEEE-EecCcEEEEeCCCCce--eEEecCCC----C----CCCeEEEEEccCCCEEEEEec-----------CCe
Q 004683 593 HPDQIHLLS-IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSCDGKCIYVSCK-----------SGH 650 (737)
Q Consensus 593 sp~g~~l~~-~~dg~I~iwd~~~~~~--~~~~~~~~----h----~~~v~~~~~sp~~~~l~sgs~-----------dg~ 650 (737)
+|++..++. +.++.|.++|+..... ...+.... + ......++|+|+++.++++.. .+.
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 677766665 5778999999875432 22221100 0 011123789999988887654 358
Q ss_pred EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC--ceeee
Q 004683 651 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES--EVEWG 717 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~--~~~w~ 717 (737)
|.+||+.+++.+..+..+ . +.+++|+| |+++|++++. ++|.+||..++ +..-.
T Consensus 288 v~viD~~t~~~v~~i~~~---------~---p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGR---------D---ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp EEEEETTTTEEEEEEECT---------T---CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred EEEEECCCCcEEEEEecC---------C---eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 999999999999988642 2 34899999 8899988876 99999999998 65433
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=2.3e-13 Score=143.67 Aligned_cols=248 Identities=12% Similarity=0.084 Sum_probs=163.1
Q ss_pred CCCEEEEEe---------cCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEeec
Q 004683 350 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKW 417 (737)
Q Consensus 350 dg~~la~~s---------~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~d---g~i~iWd~ 417 (737)
||+.++... .++.|.+|++.+ +....+ ..+..++|||||++|+.++.+ +...||
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~-- 88 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIW-- 88 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEE--
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEE--
Confidence 888888753 256688888874 333332 357899999999999988764 343344
Q ss_pred cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-----------------------
Q 004683 418 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----------------------- 471 (737)
Q Consensus 418 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d----------------------- 471 (737)
+|+..++....... +.. +.+++|+ |+.|+.++ +
T Consensus 89 -----------------~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 89 -----------------VADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp -----------------EEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred -----------------EEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 24444444433222 223 8899999 78887776 3
Q ss_pred ----CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECC---------CeEEEEecCCCcEEEEEcCCCcceEE
Q 004683 472 ----GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRITC 538 (737)
Q Consensus 472 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~d---------g~I~vwd~~~~~~~~~l~~~~~~v~~ 538 (737)
..|++||+.+++.+..+.. . .+..++|+|+|.++++..+ ..|.++| +++. ..+..+ ..+..
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~ 221 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYA 221 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEE
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceee
Confidence 5799999998877455544 3 7889999999933344433 1455555 5554 334334 45554
Q ss_pred EEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEE-EEEecCCCEEEE-EecCcEE
Q 004683 539 LAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-IHEGQID 608 (737)
Q Consensus 539 l~~sp~g~~l~s~s~d--------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~~-~~dg~I~ 608 (737)
+ +|+|+.++.++.+ ..|.+|| +++ ... +..++. ..+.. +.|+ +| .+++ +.++.++
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~-l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMG-ILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEE-SSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEe-ccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 4 9999998887754 3688888 422 111 333433 56776 8999 88 6666 4788999
Q ss_pred EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE-EEEEcCCCe
Q 004683 609 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV-KVFDTSTLE 660 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I-~vwd~~~~~ 660 (737)
|| +.+++..... . +...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 287 l~-~~~g~~~~~~-~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 287 LY-IWDGEIKPIA-K--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EE-EESSSEEEEE-C--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EE-EcCCceEEEe-c--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 99 8766654333 2 267799999999 677777777654 677766 54
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.4e-11 Score=126.62 Aligned_cols=282 Identities=9% Similarity=0.035 Sum_probs=190.0
Q ss_pred eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 380 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 380 ~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
+.++. +...+.+++++++|+.+++...++.|.+|+.. +.. ..... ..+...+.++
T Consensus 8 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------------------~~~~~-~~~~~~~~~i 62 (299)
T 2z2n_A 8 LNLTN--QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------------------TEYPL-PTPDAKVMCL 62 (299)
T ss_dssp EECCS--SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------------------EEEEC-SSTTCCEEEE
T ss_pred EcCCC--cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------------------EEecC-CcccCceeeE
Confidence 33444 56789999999999977766667889888754 211 11000 0234678899
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE-EcCC
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGH 532 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~ 532 (737)
+++ |.++++.. ++.|..||.. ++. ..+. .....+.++++.+++ .+++...++.|..||. +++.... ....
T Consensus 63 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 63 TISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred EECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 998 67666666 7899999986 443 3332 345578899999999 6666667889999998 5554432 2334
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEe
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 611 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd 611 (737)
...+.+++++++|+..++...++.|..||. +++... .. ... .. ..+..++++++|...++. .++.|.+||
T Consensus 140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK-IPT-PA---SGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE-CSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee-CCC-CC---CcceeEEECCCCCEEEEccCCceEEEEC
Confidence 567899999999988887777889999998 543211 11 111 11 468899999999876665 578999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
. +++... +....+...+.+++++++|++.++...++.|.+||. +++. ..+... ++ .. .+.++++ + +
T Consensus 211 ~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-----~~-~~--~~~~i~~-~-~ 276 (299)
T 2z2n_A 211 T-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-----IK-SA--EPHGICF-D-G 276 (299)
T ss_dssp T-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-----SS-SC--CEEEEEE-C-S
T ss_pred C-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-----CC-CC--ccceEEe-c-C
Confidence 9 666433 322223567899999999997777667899999998 4543 233211 11 12 2447888 7 7
Q ss_pred CCEEEEEECCCcEEEEecCCCc
Q 004683 692 PNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+.++++.+ .+.|..+++.+++
T Consensus 277 g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 277 ETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp SCEEEEET-TTEEEEEEEC---
T ss_pred CCEEEEec-CCcEEEEEcCccc
Confidence 77776654 5678778876643
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=7.4e-13 Score=139.71 Aligned_cols=254 Identities=8% Similarity=0.021 Sum_probs=168.6
Q ss_pred CCCeEEEEEecCCCEEEEEEC---------CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 458 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~---------dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~ 458 (737)
...+..+++ ||++++.... ++.|.+| +..++..... ..+.+
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~---------------------d~~~~~~~~l-------~~~~~ 63 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIE---------------------NLKNNARRFI-------ENATM 63 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEE---------------------ETTTCCEEEE-------ESCEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEE---------------------eCCCCceEEc-------ccCCC
Confidence 345777888 9998877532 3344444 4444443221 35778
Q ss_pred EEEe--CCEEEEEe-C---C--eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC-----------------
Q 004683 459 FALR--GSHLFSAS-G---G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----------------- 512 (737)
Q Consensus 459 v~~s--~~~l~s~s-d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d----------------- 512 (737)
++|+ |++|+.++ + + .|.+||+.+++.......+. +..++|+||| .|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 9999 88888877 3 3 38888998887665554433 8999999999 77777632
Q ss_pred ----------CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC-------cEEEEeCCCCceeeceeeee
Q 004683 513 ----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 513 ----------g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-------~I~lwdl~~~~~~~~~~~~~ 575 (737)
..|++||+.+++.+..+.. . .+..++|+|+| .+++++.++ ...+|.+.+++. ..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~--- 212 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EK--- 212 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EE---
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EE---
Confidence 5799999998887455554 3 78899999999 777776542 334444434321 11
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-Eec--------CcEEEEeCCCCceeEEecCCCCCCCeEE-EEEccCCCEEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS 645 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d--------g~I~iwd~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~l~sg 645 (737)
+..+ ..+..+ +|+|+.|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+ |+ +++++
T Consensus 213 l~~~-----~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 213 MFEK-----VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EEEE-----ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET-TE-EEEEE
T ss_pred eccC-----cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc-Cc-EEEEE
Confidence 1111 123343 999998876 432 3688888 55543 3332 34667886 8999 88 88999
Q ss_pred ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcE-EEEecC
Q 004683 646 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 710 (737)
Q Consensus 646 s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V-~iWd~~ 710 (737)
+.++.+++| +.+++....+. + ... +.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~-------~--~~~--v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAK-------G--RHW--IMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSEEEEEC-------S--SSE--EEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCceEEEec-------C--CCe--EEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999 88666543332 1 223 34889988 577777777765 778776
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=6.7e-13 Score=154.69 Aligned_cols=278 Identities=11% Similarity=0.029 Sum_probs=181.9
Q ss_pred CCCCCEEEEEecCCe---EEEeecCccCCCCceeeeecCC----CCCCCCeEEEEEecCCCEEEEEECCC-----cEEEe
Q 004683 348 LPDADSAVCAKSLEK---SVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTA-----THKLW 415 (737)
Q Consensus 348 spdg~~la~~s~dg~---v~iW~~~~~~~~~~~~~~~l~~----~~h~~~V~~v~fspdg~~L~s~s~dg-----~i~iW 415 (737)
+|||++++....++. -.+|..... .+....+ +.. .+|...+..++|||||++||.++.++ +|++|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l-ld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVF-LDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEE-ECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEE-ECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887765432 145654421 1222221 111 12455789999999999999887643 67777
Q ss_pred eccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCe----------------EEE
Q 004683 416 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISI 476 (737)
Q Consensus 416 d~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~----------------i~v 476 (737)
|+.+ ++...... ....+..++|+ |+.|+.++ ++. |++
T Consensus 157 d~~t---------------------g~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 157 KVDG---------------------AKELPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp ETTT---------------------TEEEEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred ECCC---------------------CCCCcccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 6653 33322111 11125578999 78888877 554 999
Q ss_pred EECCCCcE--EEEec--CCCCCeEEEEEcCCC-eEEEEEC-----CCeEEEEecCC------Cc-EEEEEcCCCcceEEE
Q 004683 477 FSLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCL 539 (737)
Q Consensus 477 wd~~~~~~--~~~~~--~~~~~v~~~~~s~~~-~l~sgs~-----dg~I~vwd~~~------~~-~~~~l~~~~~~v~~l 539 (737)
|++.++.. ...+. .+...+..+.|+||| +|+.++. +..|++||+.+ +. ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 99988762 23333 345567899999999 7776654 56899999986 43 35556666665555
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC--cEEEEeC
Q 004683 540 AYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA 612 (737)
Q Consensus 540 ~~sp~g~~l~s~s~dg----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg--~I~iwd~ 612 (737)
.|+|+|+.++..+.++ .|.+||+.++... ....+..++.. ..+..++|++++..+++. .++ .|++||+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 5889999887776543 5999999874211 11212222210 257789999777666664 666 5777888
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEE-e---cCCeEEEEEcCCCe
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-C---KSGHVKVFDTSTLE 660 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s---~dg~I~vwd~~~~~ 660 (737)
.+++.+..+.. +...+.+++++|+++.++.. + ..++|+.||+.+++
T Consensus 367 ~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 367 ATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 77887777754 36778899999998766643 2 24799999999887
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=4.6e-13 Score=156.09 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=167.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CC----eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCe-------
Q 004683 451 DPKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 514 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s--dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~------- 514 (737)
+|...+..++|| |++|+.+. +| .|++||+.+++.......+. .+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 355568899999 88888776 23 89999999998776432221 25678999999 8888887765
Q ss_pred ---------EEEEecCCCcE--EEEEcC--CCcceEEEEEeCCCCEEEEEeC-----CCcEEEEeCCC------Cceeec
Q 004683 515 ---------ILVHCPCTKKT--KAKLKG--HQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 570 (737)
Q Consensus 515 ---------I~vwd~~~~~~--~~~l~~--~~~~v~~l~~sp~g~~l~s~s~-----dg~I~lwdl~~------~~~~~~ 570 (737)
|++|++.+++. ...+.. |...+..+.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 99999988762 233332 4556889999999999888765 56899999875 311
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEE-Ee----cCcEEEEeCCCCc--eeEEecCCCCCCCeEEEEEccCCCEEE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~----dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~ 643 (737)
....+..+. ..+.. .|+|+|+.|+. +. .+.|.+||+.++. ....+..+.....+.+++|++++.+++
T Consensus 278 -~~~~l~~~~----~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWVKLIDNF----EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCEEEECSS----SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceEEeeCCC----CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 122122222 23433 58899988876 43 2369999998764 234444432123688899998888888
Q ss_pred EEecCCe--EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE-EEE---CCCcEEEEecCCCc
Q 004683 644 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 713 (737)
Q Consensus 644 sgs~dg~--I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~V~iWd~~~~~ 713 (737)
+...|+. |++|++.+|+....+..+ .. .+..++++| ++..++ +.+ ..++|+.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--------~~--~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--------VG--SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--------SS--EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--------Cc--eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 666787778766666432 22 244788999 666544 333 34789999998876
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=1.2e-13 Score=160.43 Aligned_cols=279 Identities=9% Similarity=-0.059 Sum_probs=175.8
Q ss_pred cCCCCCEEEEEecCCe---EEEeecCccCCCCceeeeecCC----CCCCCCeEEEEEecCCCEEEEEE-----CCCcEEE
Q 004683 347 SLPDADSAVCAKSLEK---SVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALT-----QTATHKL 414 (737)
Q Consensus 347 ~spdg~~la~~s~dg~---v~iW~~~~~~~~~~~~~~~l~~----~~h~~~V~~v~fspdg~~L~s~s-----~dg~i~i 414 (737)
.+|||++++....++. -.+|..... .+....+ +.. .+|...+..++|||||++||.+. .+.+|++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l-~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVL-LDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEE-ECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEE-EchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 5589999998877653 456655421 2222332 211 23666799999999999998443 3467888
Q ss_pred eeccCCcccccccceeeeeEEeecCCCeee-eeccCCCCCCCeEEEEEe--CCEEEEEe-CCe-------------EEEE
Q 004683 415 WKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS-GGK-------------ISIF 477 (737)
Q Consensus 415 Wd~~~~~~~~g~~~~~~~~~l~~~~~~~~~-~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~-------------i~vw 477 (737)
||+.++.. + .... .. .....++|+ |+.|+.++ +.. |++|
T Consensus 152 ~dl~tg~~---------------------~~~~~~--~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 152 IDVDSGEW---------------------SKVDVI--EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp EETTTCCB---------------------CSSCCB--SC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred EECCCCCC---------------------cCCccc--Cc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 88764332 1 0000 01 112578899 78888887 655 9999
Q ss_pred ECCCCcE--EEEec--CCCCCeEEEEEcCCC-eEEEEECCC----eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 478 SLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 478 d~~~~~~--~~~~~--~~~~~v~~~~~s~~~-~l~sgs~dg----~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
++.++.. ...+. .+...+..+.|+||| .|+.++.++ .|++|+..++... .+..+...+....+ ++|.++
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEE
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEE
Confidence 9988762 23333 455678899999999 777766555 7778876666543 34445555666666 566644
Q ss_pred EEEe---CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCC-CCceeEEecC
Q 004683 549 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVP 623 (737)
Q Consensus 549 ~s~s---~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~-~~~~~~~~~~ 623 (737)
+++. .++.|.+||+.++.... ...+...+.. ..+..++++ ++..+++ ..++..+||.+. +++....+..
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 359 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARAS---WKEIVPEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL 359 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGG---CEEEECCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred EEECCCCCCCEEEEEeCCCCCccC---CeEEecCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence 4433 25789999997743110 1112222211 467888888 5555555 477776666543 4555555543
Q ss_pred CCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEEcCCCee
Q 004683 624 DKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 661 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs----~dg~I~vwd~~~~~~ 661 (737)
+ ....+..++++|+++.++... ..++|++||+.+++.
T Consensus 360 ~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 360 P-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp S-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2 256677888999998776332 347899999998874
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.3e-13 Score=160.32 Aligned_cols=239 Identities=9% Similarity=-0.007 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe------CCeEEEEECCCCcEEEEecCCCCCe--EEEEEcCCC-eEEEEECCCe-----
Q 004683 451 DPKDSISCFALR--GSHLFSAS------GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDDSS----- 514 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s------dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~s~~~-~l~sgs~dg~----- 514 (737)
+|...+.+++|| |++|+.+. +.+|++||+.+++.+. ..+...+ ..++|+||| .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 466678899999 88888443 2589999999988641 1111122 578999999 8888888776
Q ss_pred --------EEEEecCCCc----EEEEEcCCCcceEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCceeeceeeeeccc
Q 004683 515 --------ILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 515 --------I~vwd~~~~~----~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg----~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
|++|++.++. .+.....+...+.++.|+|||++++.++.++ .|++||..++. ...+..
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~ 269 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVK 269 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeec
Confidence 9999999876 2333334556788999999999998887666 67777665432 121222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEE-Ee----cCcEEEEeCCCCce--eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 004683 579 GLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 651 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~~-~~----dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I 651 (737)
.. ..+....+ ++|. ++. +. ++.|.+||+.++.. ...+..+.....+.+++|+ ++.++++...|+..
T Consensus 270 ~~----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 270 GV----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp CS----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred CC----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 22 34555556 6666 554 42 47899999987653 2344332224567888888 77888899999988
Q ss_pred EEEEcC-CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE-EEE---CCCcEEEEecCCCce
Q 004683 652 KVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 714 (737)
Q Consensus 652 ~vwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~V~iWd~~~~~~ 714 (737)
+||.+. +++....+..+ ... .+..++++| ++..++ +.+ ..++|++||+.+++.
T Consensus 343 ~l~~~~~~g~~~~~l~~~-------~~~--~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLP-------GVG--AASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEETTCCEEEECCCS-------SSS--EECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEeCCCCeeEEecCC-------CCe--EEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888665 35544444321 122 233778889 676655 332 347899999988764
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=3.1e-12 Score=134.12 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=178.8
Q ss_pred cCCeEEEeecCccCCCCceeeeec---CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEE
Q 004683 359 SLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 435 (737)
Q Consensus 359 ~dg~v~iW~~~~~~~~~~~~~~~l---~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l 435 (737)
.+++|.+||..+ ++.....+ .+.........+++. +++..++...++.|.+||..+
T Consensus 15 ~~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t---------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT---------------- 73 (328)
T ss_dssp CCBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT----------------
T ss_pred CCceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc----------------
Confidence 378999999884 33332211 011123456788874 344555555678898877653
Q ss_pred eecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe--CCeEEEEECCCCcEEEEecCCC-----CCeEEEEEcCCCeEE
Q 004683 436 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDLFA 507 (737)
Q Consensus 436 ~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~l~ 507 (737)
++.+.... .......++++ +..++++. ++.|.+||..+++....+.... .....+++ .++.++
T Consensus 74 -----~~~~~~i~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 74 -----FKEVGRIT---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp -----CCEEEEEE---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred -----cEEEEEcC---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence 33332221 34567889996 33555444 7999999999999887776332 13446667 344444
Q ss_pred EEE--CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCCceeeceeeee
Q 004683 508 FGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 508 sgs--~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d----------g~I~lwdl~~~~~~~~~~~~~ 575 (737)
++. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.+||..+++.... +.
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--~~- 220 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--FK- 220 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--EE-
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE--Ee-
Confidence 444 4889999999999988877643 345788999999877766554 7899999988543221 11
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc-CCCEEEEE----ecCCe
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVS----CKSGH 650 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~sg----s~dg~ 650 (737)
+..+ ..+..++++|+++.++++.. .|.+||..+++...............+++++| ++.+.++. ..++.
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 1212 35789999999999888644 99999998887642111111146788999999 55555555 56899
Q ss_pred EEEEEcCCCeeEEEEe
Q 004683 651 VKVFDTSTLELRCQIN 666 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~ 666 (737)
|.+||.. ++.+..+.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 88888775
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=3.9e-12 Score=131.08 Aligned_cols=230 Identities=11% Similarity=-0.044 Sum_probs=161.9
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 452 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 452 h~~~V~~v~~s--~~-~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
+.....+++|+ |+ +++++. ++.|..||..++ ...+..+...+.+++++++| .+++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 55667899999 76 666666 899999999877 66777777889999999999 7766666789999999888765
Q ss_pred EEEcCC----CcceEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeceeeeecccCCCCCCC
Q 004683 527 AKLKGH----QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 527 ~~l~~~----~~~v~~l~~sp~g~~l~s~s~-----------------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
...... ...+..++++|+|+++++.+. .+.|..+|.. +.. ..+.. +. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~------~~~~~-~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL------SAPIR-DR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE------EEEEC-CC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE------EEeec-CC---C
Confidence 443221 234678999999998887321 2455555554 221 11111 22 4
Q ss_pred CeEEEEEecCCCEEEEE-ecCcEEEEeCC-CCce---eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 586 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~-~dg~I~iwd~~-~~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
.+..++|+|+|+.+++. .++.|++||+. ++.. ...+ . .+...+.+++++++|++.++. ++.|.+|+.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 67899999999988554 67899999986 5554 3344 2 245667789999999876666 8899999987 67
Q ss_pred eEEEEecccccCCCCccCceeeEEEEE-ccCCCCEEEEEECCCcEEEEecCCC
Q 004683 661 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~v~~~~v~~-sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
.+..+..+ .. +.+++| +| ++..|.+++.++ +.-++..+.
T Consensus 248 ~~~~~~~~--------~~---~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTP--------QT---TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEECS--------SC---CCEEEEEST-TSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEEECC--------CC---ceeEEEECC-CCCEEEEEcCCe-EEEEEcccc
Confidence 66666532 22 348888 57 788888887763 444444443
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=3.1e-12 Score=134.18 Aligned_cols=263 Identities=10% Similarity=0.040 Sum_probs=174.1
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
++|++..++..+.++.++.|. ...... +.+ +...+.+++|+|+|+.++++..++.|.+||..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~--~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~------ 76 (333)
T 2dg1_A 13 YSGKSNSAVPIISESELQTIT------AEPWLE--ISK--KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK------ 76 (333)
T ss_dssp SCGGGGCSSCCCCGGGSCEEE------CEEEEE--EES--SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC------
T ss_pred ecCCccceeEEeecccCcccc------cceeEE--Eec--cCccccCcEECCCCCEEEEECCCCEEEEEeCCCC------
Confidence 556665566556777888883 122222 333 5667899999999997778888899988876532
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C----CeEEEEECCCCcEEEEec--CCCCCeEE
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIATY 497 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d----g~i~vwd~~~~~~~~~~~--~~~~~v~~ 497 (737)
.+..... .+...+.+++++ |+++++.. + +.|.+||..++.....+. .+...+.+
T Consensus 77 ---------------~~~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 77 ---------------EIKRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp ---------------CEEEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred ---------------cEEEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 2111111 245679999998 66666665 4 589999998876654443 34457899
Q ss_pred EEEcCCC-eEEEEEC------CCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEE-EeCCCcEEEEeCCC-Ccee
Q 004683 498 FILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG-WKKL 568 (737)
Q Consensus 498 ~~~s~~~-~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s-~s~dg~I~lwdl~~-~~~~ 568 (737)
++++|+| .+++... .+.|..+|..+++..... .....+..++|+|+|+.++. .+.++.|.+||+.+ +...
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 9999999 5555443 356777777665544332 23345789999999986654 45678999999964 2211
Q ss_pred ec---eeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCC----CCCCeEEEEEccCCC
Q 004683 569 CS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGK 640 (737)
Q Consensus 569 ~~---~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~ 640 (737)
.. ...... .++ ..+..++++++|+..++. .++.|.+||. +++.+..+..+. +...+.+++|+||++
T Consensus 219 ~~~~~~~~~~~-~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 219 QPFGATIPYYF-TGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp EEEEEEEEEEC-CSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred ccccceEEEec-CCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence 10 111111 111 357889999999877775 5789999998 566666664321 112588999999988
Q ss_pred EEEEEecCC
Q 004683 641 CIYVSCKSG 649 (737)
Q Consensus 641 ~l~sgs~dg 649 (737)
.|+.++.++
T Consensus 293 ~L~v~~~~g 301 (333)
T 2dg1_A 293 QLIICSNDI 301 (333)
T ss_dssp EEEEEEECG
T ss_pred EEEEEeCcc
Confidence 777666553
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=5.3e-12 Score=130.10 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=165.4
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004683 387 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 463 (737)
Q Consensus 387 h~~~V~~v~fspdg~-~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 463 (737)
+.....+++|+|+|+ .++++..++.|..|+..++ . ..+. .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence 356678999999998 6777777899988876531 1 0111 355678899998 7
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEecCC----CCCeEEEEEcCCC-eEEE----EE-------------CCCeEEEEec
Q 004683 464 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAF----GF-------------DDSSILVHCP 520 (737)
Q Consensus 464 ~~l~s~s-dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~~~-~l~s----gs-------------~dg~I~vwd~ 520 (737)
+++++.. ++.|.+||..+++........ ...+..++++|+| .+++ |+ ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 7666665 689999999888765443221 2345679999999 6666 32 1346777776
Q ss_pred CCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCce-eeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 521 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 521 ~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~-~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
. ++. ..+..+......++|+|+|+.+++.+.++.|.+||+. ++.. ..... + ..+. ..+..++++++|+.
T Consensus 161 ~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~---~-~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH---F-TVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE---E-CCSS---SCCCSEEEBTTSCE
T ss_pred C-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE---e-eCCC---CCCCeEEECCCCCE
Confidence 5 443 3444556678999999999999777778999999997 3332 11111 1 1222 45678999999987
Q ss_pred EEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEEcCCCee
Q 004683 599 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLEL 661 (737)
Q Consensus 599 l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~sgs~dg~I~vwd~~~~~~ 661 (737)
.++. ++.|.+||.. ++.+..+..+ .. +++++| +|+++.|++++.+ .+.-++..+.++
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 7767 8899999986 7777777652 34 889999 5899999988875 455666666654
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=1e-11 Score=130.66 Aligned_cols=281 Identities=13% Similarity=0.087 Sum_probs=186.2
Q ss_pred cCCCCCEEEEEec-----CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCc
Q 004683 347 SLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 411 (737)
Q Consensus 347 ~spdg~~la~~s~-----dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s----------~dg~ 411 (737)
..|||+.+..... ++.|.+.|..+ .+.... ++. -..+ . +++||||++++.++ .++.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~-I~v--G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGM-IDG--GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEE-EEE--CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC----CeEEEE-EEC--CCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 6799999988865 67899999874 333322 221 1233 4 99999999888776 3567
Q ss_pred EEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCC-----CCCCeEEEEEe--CCEEEEEe---CCeEEEEECCC
Q 004683 412 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSLET 481 (737)
Q Consensus 412 i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~-----h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~ 481 (737)
|.+||..+ .+.+....... .......++++ |++++++. ++.|.++|+.+
T Consensus 111 VsviD~~t---------------------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 111 VEVFDPVT---------------------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp EEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEECCC---------------------CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence 87777654 22222211100 11234468888 88877765 47999999999
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-CcEEEEEcCC----CcceE-EEEEe-CCCCEEEEEe
Q 004683 482 FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVSSG 552 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~-~~~~~~l~~~----~~~v~-~l~~s-p~g~~l~s~s 552 (737)
++.+.++.... |..+.|.+ .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+
T Consensus 170 ~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs 244 (386)
T 3sjl_D 170 KAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PT 244 (386)
T ss_dssp TEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EB
T ss_pred CcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-Ee
Confidence 99999886432 22233544 777888899999999876 5553322211 12222 24564 6775444 66
Q ss_pred CCCcEEEEeCCCCceeeceeee-----ecccCCCCCCCCeEEEEEecCCCEEEEE-e----------cCcEEEEeCCCCc
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLN 616 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~----------dg~I~iwd~~~~~ 616 (737)
.+|.|++.|+.+........+. .+..+..+ .....++++|+++.+++. . .+.|.++|+.+++
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 6899999999764321111111 00111111 334467889999888874 2 2579999999999
Q ss_pred eeEEecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEEcCCCeeEEEEec
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs-~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+.++.. ...+.++.+++|++ .|+++. .++.|.++|..+++.+.++..
T Consensus 323 v~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 323 RLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 9999865 45688999999997 676654 589999999999999998864
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1.3e-10 Score=119.17 Aligned_cols=269 Identities=7% Similarity=-0.015 Sum_probs=184.7
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
+.|+|...++...++.|..|+.. +....+.++. +...+.+++++++|..+++...++.|..|+.... .
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---- 89 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-I---- 89 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E----
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-E----
Confidence 67899988777778899999976 2233333333 4578999999999998777766888888875411 0
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEE-ecCCCCCeEEEEEcC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP 502 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~ 502 (737)
..+.. ......+.++++. |+++++.. ++.|.+||. +++.... .......+..+++.+
T Consensus 90 -------~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 90 -------KEYTL-----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS 150 (299)
T ss_dssp -------EEEEC-----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred -------EEEeC-----------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence 01110 0134568889998 66666665 789999998 5554433 223455789999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEE-EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
+| ..++...++.|..||. +++.... +......+.+++++++|+..++...++.|..||. ++.... +. ... .
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~~-~ 223 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK-IPT-P 223 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE-CSS-T
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE-CCC-C
Confidence 99 6666666789999998 6665443 3334556889999999997777667889999999 543211 11 121 2
Q ss_pred CCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 581 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
. ..+.+++++++|+..++. .++.|..||. ++. +..+....+...+.++++ ++|.+.++.+ .+.+..++..++
T Consensus 224 ~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 224 N---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp T---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred C---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 2 578899999999876665 6789999998 454 334432223567899999 8888777655 577878887765
Q ss_pred e
Q 004683 660 E 660 (737)
Q Consensus 660 ~ 660 (737)
+
T Consensus 297 ~ 297 (299)
T 2z2n_A 297 N 297 (299)
T ss_dssp -
T ss_pred c
Confidence 4
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=3.5e-12 Score=129.29 Aligned_cols=235 Identities=12% Similarity=0.034 Sum_probs=162.1
Q ss_pred CeEEEEEe--CCEEE-EEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEE
Q 004683 455 SISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 455 ~V~~v~~s--~~~l~-s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l 529 (737)
...+++++ |++++ +.. ++.|.+||..++........+...+.+++++++| .+++.. ++.|.+||..++... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 67889998 66555 434 7899999976554322222333567889999999 555544 889999998765433 33
Q ss_pred c-CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcE
Q 004683 530 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 607 (737)
Q Consensus 530 ~-~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I 607 (737)
. .....+.+++++++|+.+++...++.|.+||..+... .. ...... ..+..++++|+|+.+++. .++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----TV-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-----EE-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-----Ee-eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 2 2335789999999999888777788999997655221 11 111111 357789999999866665 57899
Q ss_pred EEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 608 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 608 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
.+||............ +...+.+++++++|.+.++...++.|.+|+..+..... ... .+...+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 9999976654432221 23678999999999877777778999999987654332 111 11122458999
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+| ++.++++...++.|++++....+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 78899999999999999997755
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=1.1e-10 Score=124.36 Aligned_cols=282 Identities=9% Similarity=0.003 Sum_probs=183.6
Q ss_pred cCCCCCEEEEEec--CC---eEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCc
Q 004683 347 SLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 411 (737)
Q Consensus 347 ~spdg~~la~~s~--dg---~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s----------~dg~ 411 (737)
..|+++++.+... .+ +|.++|... ++.... ++. ...+ .++|||||++++.+. .+++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~~-i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILGH-VNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCC----CeEEEE-ecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 4578887777653 33 789999874 333332 432 1223 999999999999886 3577
Q ss_pred EEEeeccCCcccccccceeeeeEEeecC-CCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEE
Q 004683 412 HKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL 485 (737)
Q Consensus 412 i~iWd~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~ 485 (737)
|.+||..+... ...+ ... .+.. .+......++|+ |++|++++ ++.|.++| .+++.+
T Consensus 99 v~viD~~t~~~-----~~~i-----~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 99 VEVFDPVTFLP-----IADI-----ELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred EEEEECCCCcE-----EEEE-----ECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 88887653221 1110 000 0000 011234478888 88888776 37899999 999988
Q ss_pred EE-ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEc-----CCCcce-EEEEEeCCCCEEEEEeCCCc
Q 004683 486 AT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRI-TCLAYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 486 ~~-~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~-----~~~~~v-~~l~~sp~g~~l~s~s~dg~ 556 (737)
.. +.... |+.+.|++ .+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+..+.
T Consensus 161 ~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 161 DQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred eEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 87 64321 34566776 6677788999999999 887663322 111221 23456776666555567889
Q ss_pred EEEEeCCCCceeeceeeeec-----ccCCCCCCCCeEEEEEecCCCEEEEE-e----------cCcEEEEeCCCCceeEE
Q 004683 557 LCVWDAVGWKKLCSKFLHSF-----QTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 557 I~lwdl~~~~~~~~~~~~~~-----~~~~~~~~~~v~~l~~sp~g~~l~~~-~----------dg~I~iwd~~~~~~~~~ 620 (737)
+.+.|+.+........+... ..+..+ .....++++|+++.+++. . ++.|.++|..+++.+.+
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 99999976422111111100 001011 334558899999888774 2 25799999999999998
Q ss_pred ecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEEcCCCeeEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~-~l~sgs-~dg~I~vwd~~~~~~~~~~ 665 (737)
+.. .....+++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 314 i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 314 ISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 864 34688999999999 777777 4899999999999988774
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=4.1e-11 Score=134.25 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=187.8
Q ss_pred cCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeE
Q 004683 398 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 474 (737)
Q Consensus 398 pdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i 474 (737)
|.+.++++...+++|.++|..+ ++++.... ....+..+.|+ |+++++++ ++.|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t---------------------~~v~~~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V 220 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST---------------------YEIKTVLD---TGYAVHISRLSASGRYLFVIGRDGKV 220 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT---------------------CCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CCceEEEEeCCCCeEEEEECCC---------------------CeEEEEEe---CCCCccceEECCCCCEEEEEcCCCeE
Confidence 4556677777789998887653 33332222 23456689999 88999888 8999
Q ss_pred EEEECC--CCcEEEEecCCCCCeEEEEEc----CCC-eEEEE-ECCCeEEEEecCCCcEEEEEcCC-----------Ccc
Q 004683 475 SIFSLE--TFQTLATFANPPPIATYFILL----PQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGH-----------QNR 535 (737)
Q Consensus 475 ~vwd~~--~~~~~~~~~~~~~~v~~~~~s----~~~-~l~sg-s~dg~I~vwd~~~~~~~~~l~~~-----------~~~ 535 (737)
.+||+. +++.+..+.... ....++|+ ||| +++++ ..++.|.++|..+.+.+..+... ...
T Consensus 221 ~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 221 NMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp EEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred EEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 999996 788888876533 45789999 699 65554 45689999999999988776421 125
Q ss_pred eEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeC
Q 004683 536 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA 612 (737)
Q Consensus 536 v~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~ 612 (737)
+..+..++++..++ ....+|.|.++|........ +..+..+ .....+.|+|+|++++++ .++.|.++|+
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~---v~~i~~~-----~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK---TTEISAE-----RFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE---EEEEECC-----SSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce---eeeeecc-----ccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 77888888866544 44556999999988643211 2223233 357789999999998874 6789999999
Q ss_pred CCCceeEEecC-C--CCCCCeEEEEEccCCCEEE-EEe-cCCeEEEEEcCC-------CeeEEEEecccccCCCCccCce
Q 004683 613 PTLNHTSQLVP-D--KMDLPITYATYSCDGKCIY-VSC-KSGHVKVFDTST-------LELRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 613 ~~~~~~~~~~~-~--~h~~~v~~~~~sp~~~~l~-sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~~~g~~~~~v 680 (737)
.+++.+..+.. . .|.+.-..+ ++|++..++ ++. .++.|.++|..+ .+.+..+... | .+.
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-----g--~g~- 442 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-----G--GGS- 442 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----C--SCC-
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-----C--CCC-
Confidence 99988776654 2 232222222 578755554 443 468999999988 6677776532 1 121
Q ss_pred eeEEEEEccCCCCEEEEEEC-------CCcEEEEecCCC
Q 004683 681 YPLVIAAHPLEPNRIALGLT-------NGRVHVIEPLES 712 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s~-------Dg~V~iWd~~~~ 712 (737)
..+..|| +++++.+... .++|.|+|+.+.
T Consensus 443 --~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 443 --LFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp --CCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred --EEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 2477899 7888877653 359999999876
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=4e-10 Score=115.58 Aligned_cols=280 Identities=8% Similarity=-0.005 Sum_probs=187.3
Q ss_pred eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEE
Q 004683 380 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 459 (737)
Q Consensus 380 ~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v 459 (737)
+.++. ....+.+++++++|+..++...++.|.+|+.. +.. ..... ..+...+.++
T Consensus 13 ~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------------------~~~~~-~~~~~~~~~i 67 (300)
T 2qc5_A 13 FNLSI--PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------------------KEFEV-PTPDAKVMCL 67 (300)
T ss_dssp EECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------EEEEC-SSTTCCEEEE
T ss_pred EecCC--CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------------------EEEEC-CCCCCcceeE
Confidence 33444 45688999999999977777678899888754 211 11001 0234568889
Q ss_pred EEe--CCEEEEEe-CCeEEEEECCCCcEEEE-ecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE-EcCCC
Q 004683 460 ALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQ 533 (737)
Q Consensus 460 ~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~~ 533 (737)
++. |+++++.. ++.|..||.. ++.... .......+.++++.++| .+++...++.|..+|.. ++.... +....
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~ 145 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKG 145 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCC
Confidence 998 66666655 6899999988 655322 22344678899999999 66666667899999987 655432 33345
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 612 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~ 612 (737)
..+.+++++++|+..++...++.|..||. ++.... +. .. ... ..+..++++++|...++. ..+.|.+||.
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP-LP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE-CS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee-CC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 67899999999997776666788999998 432211 11 11 111 468899999999877775 5678999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 692 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 692 (737)
++........ .....+.+++++++|++.++...++.|..|+. +++.. .+... .+ .. .+.+++..+ ++
T Consensus 217 -~g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~----~~--~~--~~~~i~~~~-~g 283 (300)
T 2qc5_A 217 -TGEISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ----TE--NA--EPHGITFGK-DG 283 (300)
T ss_dssp -TCCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC----ST--TC--CCCCEEECT-TS
T ss_pred -CCcEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC----cc--CC--ccceeEeCC-CC
Confidence 5554433222 23567899999999997777767799999998 45433 22211 01 12 234788898 67
Q ss_pred CEEEEEECCCcEEEEecC
Q 004683 693 NRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 693 ~~las~s~Dg~V~iWd~~ 710 (737)
.++++.. . .|..+++.
T Consensus 284 ~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 284 SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CEEEECS-S-EEEEEEEC
T ss_pred CEEEEcc-C-ceEEeCCC
Confidence 7666554 4 67777653
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=4e-12 Score=148.76 Aligned_cols=280 Identities=13% Similarity=0.020 Sum_probs=171.3
Q ss_pred cCCCCCEEEEEecCCe---EEEeecCccC-CCCceeeeecC----CCCCCCCeEEEEEecCCCEEEEEECC-----CcEE
Q 004683 347 SLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQT-----ATHK 413 (737)
Q Consensus 347 ~spdg~~la~~s~dg~---v~iW~~~~~~-~~~~~~~~~l~----~~~h~~~V~~v~fspdg~~L~s~s~d-----g~i~ 413 (737)
.+|||++++....++. -.+|...... ..+....+ +. ..+|...+..++|||||++||.++.+ .+|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-ld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVL-LDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEE-ECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEE-ECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 4599999998876655 5677654210 00122221 11 11244578899999999999988764 3477
Q ss_pred EeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CC--------------eEEEE
Q 004683 414 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISIF 477 (737)
Q Consensus 414 iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg--------------~i~vw 477 (737)
+||+.++ +.+.... +...+..++|+ ++.|+.++ ++ .|++|
T Consensus 193 v~dl~tg---------------------~~~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 193 FVGVADG---------------------KPLADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp EEETTTC---------------------CEEEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred EEECCCC---------------------CCCCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence 7776543 2222110 11112356777 65666665 43 38999
Q ss_pred ECCCCcE--EEEecC--CCCCeEEEEEcCCC-eEEEEECCC-----eEEEEecCCC--cEEEEEcCCCcceEEEEEeCCC
Q 004683 478 SLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL 545 (737)
Q Consensus 478 d~~~~~~--~~~~~~--~~~~v~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~--~~~~~l~~~~~~v~~l~~sp~g 545 (737)
++.++.. ...+.. +...+..+.|+||| .|+..+.++ .|++||+.++ ++...+..+...+... ++|+|
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg 327 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG 327 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence 9987652 233333 33458899999999 777666543 8999999877 4144455455555554 35899
Q ss_pred CEEEEEeCC----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCC-CCceeE
Q 004683 546 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS 619 (737)
Q Consensus 546 ~~l~s~s~d----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~-~~~~~~ 619 (737)
+.|+..+.+ +.|.+||+.++. .....+..++. ..+..++++ ++..+++ ..++..+||.+. ++....
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 988887764 459999988732 01122233333 456677777 4445555 477766555443 455556
Q ss_pred EecCCCCCCCeEEEEEccCCCEEEEE-e---cCCeEEEEEcCCCee
Q 004683 620 QLVPDKMDLPITYATYSCDGKCIYVS-C---KSGHVKVFDTSTLEL 661 (737)
Q Consensus 620 ~~~~~~h~~~v~~~~~sp~~~~l~sg-s---~dg~I~vwd~~~~~~ 661 (737)
.+..+ ....+..++++|+++.++.. + ..++|++||+.+++.
T Consensus 400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 65432 25678899999998766532 2 348999999998873
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=9.5e-12 Score=126.04 Aligned_cols=236 Identities=9% Similarity=-0.018 Sum_probs=163.1
Q ss_pred CeEEEEEecCCCEEE-EEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 390 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 390 ~V~~v~fspdg~~L~-s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
...+++++|+|+.++ +.+.++.|.+|+..+... ..+ . ..+...+.+++++ |+++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~-----------~-~~~~~~p~~i~~~~~g~l~ 81 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVL-----------P-FNGLYQPQGLAVDGAGTVY 81 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EEC-----------C-CCSCCSCCCEEECTTCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceE-----------e-eCCcCCcceeEECCCCCEE
Confidence 788999999999766 446788998887543211 000 0 0233456788898 5644
Q ss_pred EEEeCCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC
Q 004683 467 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 544 (737)
Q Consensus 467 ~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~ 544 (737)
++..++.|.+||..+... ..+. .....+..++++++| .+++...++.|.+|+..+.............+.+++++++
T Consensus 82 v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 82 VTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp EEETTTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred EEcCCCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence 444488999999876543 3333 333578899999999 7777677889999987655443322223346788999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecC
Q 004683 545 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 545 g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~ 623 (737)
|+.+++...++.|.+||..+.... . ...... ..+..++++++|..+++. .++.|.+||....... ....
T Consensus 161 g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~ 230 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF 230 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCC
T ss_pred CCEEEEECCCCEEEEEecCCCceE-----e-ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eecc
Confidence 997777777889999998874321 1 111111 468899999999766665 5789999998654432 2221
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCe
Q 004683 624 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~ 660 (737)
.+...+.+++++++|+++++...++.|++++....+
T Consensus 231 -~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 -TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 224678999999999988888899999999987654
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=1.5e-11 Score=125.29 Aligned_cols=247 Identities=11% Similarity=0.001 Sum_probs=170.8
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCC-CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 428 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~-~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~ 428 (737)
.++.+++++.++.|.+||..+ ++..-. ++. +. ..+.+++++|+|++++ +.++.|..||. +++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t----G~~~w~-~~~--~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~------ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT----KEIVWE-YPL--EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE------ 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT----TEEEEE-EEC--CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE------
T ss_pred CCcEEEeeCCCCEEEEEECCC----CeEEEE-eCC--CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE------
Confidence 468899999999999999864 443322 433 33 4789999999999888 45778888876 3222
Q ss_pred eeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecC------CCCCeEEE
Q 004683 429 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN------PPPIATYF 498 (737)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~------~~~~v~~~ 498 (737)
+|.... +....+.++.+. |+++++.+ ++.|..+|. +|+.+..+.. +......+
T Consensus 68 ------~W~~~~----------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 68 ------LWNIAA----------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp ------EEEEEC----------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCC
T ss_pred ------EEEEcC----------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCc
Confidence 455332 123457778887 88888766 467777775 6888777652 11234456
Q ss_pred EEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc
Q 004683 499 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 577 (737)
Q Consensus 499 ~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~ 577 (737)
++.++| ++++.+.++.|..||.. |+.+.++... ..+.++...++|+.+++++.++.|..+|..+++......-..+.
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~ 208 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE 208 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB
T ss_pred eECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC
Confidence 788999 99999999999999988 9999888754 45667788999999999988889999999986654332211111
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEecC---------cEEEEeC-CCCceeEEecCCCCCCCeEEEE
Q 004683 578 TGLVPETTIVNHIQFHPDQIHLLSIHEG---------QIDVYEA-PTLNHTSQLVPDKMDLPITYAT 634 (737)
Q Consensus 578 ~~~~~~~~~v~~l~~sp~g~~l~~~~dg---------~I~iwd~-~~~~~~~~~~~~~h~~~v~~~~ 634 (737)
.... ..+..++..++|..++++.+| ..+++.+ .+++.+-++.....-+.+.++|
T Consensus 209 ~~~l---~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 209 GVQL---FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp SCCC---SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred Cccc---cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1111 347889999999988886433 3345555 4677777776544445555543
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=7e-11 Score=122.43 Aligned_cols=235 Identities=12% Similarity=0.056 Sum_probs=161.5
Q ss_pred CCCCeEEEEEe--CCEEEE-------Ee-CCeEEEEECCCCcEEEEec----CCCCCeEEEEEcCC-CeEEEEECCCeEE
Q 004683 452 PKDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSIL 516 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s-------~s-dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~-~~l~sgs~dg~I~ 516 (737)
.-....+++|+ |+++++ +. ++.|.+||..+++...... ++...+.+++++++ +.+.+++..+.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 34456789998 666666 34 8999999988877643322 24467889999999 6555555555899
Q ss_pred EEecCCCcEEEE-EcC----CCcceEEEEEeCCCCEEEEEeCC---------------CcEEEEeCCCCceeeceeeeec
Q 004683 517 VHCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 517 vwd~~~~~~~~~-l~~----~~~~v~~l~~sp~g~~l~s~s~d---------------g~I~lwdl~~~~~~~~~~~~~~ 576 (737)
+||.. ++.... ... ....+.+++++++|+..++...+ +.|..||.. ++... +
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~---~--- 167 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ---V--- 167 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE---E---
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE---e---
Confidence 99988 765433 221 12357899999999888777655 567777765 32211 1
Q ss_pred ccCCCCCCCCeEEEEEe----cCCCEEEEE--ecCcEEEEeCC-CCce-----eEEecCCCCC-CCeEEEEEccCCCEEE
Q 004683 577 QTGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIY 643 (737)
Q Consensus 577 ~~~~~~~~~~v~~l~~s----p~g~~l~~~--~dg~I~iwd~~-~~~~-----~~~~~~~~h~-~~v~~~~~sp~~~~l~ 643 (737)
... . .....++++ |+|+.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|++.+
T Consensus 168 ~~~-~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 168 DTA-F---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp EEE-E---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEE
T ss_pred ccC-C---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEE
Confidence 111 1 356789999 999766653 57899999986 4432 22222 122 5678999999999888
Q ss_pred EEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEECCCcEEEEecCC
Q 004683 644 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 644 sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~V~iWd~~~ 711 (737)
+...++.|.+||..+++....+..+ . ..+.+++++| ++. ++++...++.|..|++..
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~~~~--------~--~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRIRCP--------F--EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEEECS--------S--SCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCEEEEEcCCCCcEeEEEeCC--------C--CCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 8888899999999878766655421 1 2245899999 788 555555678999999875
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=6.2e-10 Score=118.44 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=160.0
Q ss_pred EEEEe--CCEEEEEe-----------CCeEEEEECCCCcEEEEecCC-------CCCeEEEEEcCCC-eEEEEEC--CCe
Q 004683 458 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 514 (737)
Q Consensus 458 ~v~~s--~~~l~s~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~-~l~sgs~--dg~ 514 (737)
.++++ |++++++. ++.|.+||..+.+.+..+... ......+.|+||| +++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 78898 88877764 467999999998888776532 1234578999999 8887764 578
Q ss_pred EEEEecCCCcEEEE-EcCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC-eEEEE
Q 004683 515 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQ 591 (737)
Q Consensus 515 I~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~ 591 (737)
|.++| .+++.+.. +.. .. ++.+.|++ +.+++.+.||.+.++|. ++.............+. .+ .....
T Consensus 150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~----~p~~~~~~ 219 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA----QNLLTQPA 219 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC----cceeecce
Confidence 99999 99988877 542 22 24455655 45667778999999999 65433211100011111 12 23355
Q ss_pred EecCCCEE-EEEecCcEEEEeCCCCc--eeEEecCCC--------CCCCeEEEEEccCCCEEEEEec----------CCe
Q 004683 592 FHPDQIHL-LSIHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGH 650 (737)
Q Consensus 592 ~sp~g~~l-~~~~dg~I~iwd~~~~~--~~~~~~~~~--------h~~~v~~~~~sp~~~~l~sgs~----------dg~ 650 (737)
+.+++..+ +++..+.+.+.|+.++. .+..+.... .......+.++|+++.++++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 67766544 44677899999997553 222221100 0122444789999998887653 358
Q ss_pred EEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEE-CCCcEEEEecCCCceeee
Q 004683 651 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWG 717 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~V~iWd~~~~~~~w~ 717 (737)
|.++|..+++.+..+.. ... +.+++|+| |++ .++++. .++.|.+||..+++..-.
T Consensus 300 V~VID~~t~~vv~~i~~---------g~~--p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISL---------GHD--VDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEECCCCEEEEEEEC---------CCC--cCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999999888853 122 33899999 788 677776 589999999999886544
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=8e-11 Score=123.92 Aligned_cols=281 Identities=12% Similarity=-0.007 Sum_probs=185.1
Q ss_pred EEEecCCCEEEEEEC-----CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 394 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 394 v~fspdg~~L~s~s~-----dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
....|+++.++.... ++.|.+.|.. +++++..... ...+ . ++++ |+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---------------------t~~v~~~I~v--G~~P-~-va~spDG~~l 92 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---------------------AGRVIGMIDG--GFLP-N-PVVADDGSFI 92 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT---------------------TTEEEEEEEE--CSSC-E-EEECTTSSCE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC---------------------CCeEEEEEEC--CCCC-c-EEECCCCCEE
Confidence 455789998888765 4566665544 4444433321 1223 3 8888 7766
Q ss_pred EEEe-----------CCeEEEEECCCCcEEEEecCCC-------CCeEEEEEcCCC-eEEEEEC--CCeEEEEecCCCcE
Q 004683 467 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 525 (737)
Q Consensus 467 ~s~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~-~l~sgs~--dg~I~vwd~~~~~~ 525 (737)
++++ ++.|.+||..+++.+..+.-.. .....++++||| +++++.. ++.|.++|+.+++.
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 5553 4689999999999988875221 234578999999 7777764 68999999999999
Q ss_pred EEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeE-EEEEe-cCCCEEEEE
Q 004683 526 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVN-HIQFH-PDQIHLLSI 602 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s-p~g~~l~~~ 602 (737)
+.++.... . ...+....+.+++.+.||.+.+.++.+ +....... . ...... .++. ...|. ++|++++++
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence 88885321 1 223333456777888899998888876 33211110 1 111100 1222 24664 788877778
Q ss_pred ecCcEEEEeCCCCc--eeEEec--------CCCCCCCeEEEEEccCCCEEEEEec----------CCeEEEEEcCCCeeE
Q 004683 603 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR 662 (737)
Q Consensus 603 ~dg~I~iwd~~~~~--~~~~~~--------~~~h~~~v~~~~~sp~~~~l~sgs~----------dg~I~vwd~~~~~~~ 662 (737)
.+|.|++.|+.++. .+..+. ..........++++++++.++.... .+.|.+.|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 88999999997654 232221 0001122335777999998887643 257999999999999
Q ss_pred EEEecccccCCCCccCceeeEEEEEccCCCC-EEEE-EECCCcEEEEecCCCceeeeec
Q 004683 663 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIAL-GLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 663 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las-~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
..+.. ....+ .++++| |++ +|.+ ...++.|.++|..+++..-...
T Consensus 325 ~~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 325 AKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 98864 22344 899999 665 5555 4568999999999998665553
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=4.4e-11 Score=139.96 Aligned_cols=242 Identities=10% Similarity=0.016 Sum_probs=154.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C-C----eEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCC----------
Q 004683 452 PKDSISCFALR--GSHLFSAS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS---------- 513 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s-d-g----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg---------- 513 (737)
|...+..++|| |++|+.+. + | +|++||+.+++.+.... +...+..++|+||..|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 44568889999 88888776 2 3 69999999998765421 11123578899997444444443
Q ss_pred ----eEEEEecCCCcE--EEEEcC--CCcceEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeecccCC
Q 004683 514 ----SILVHCPCTKKT--KAKLKG--HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 514 ----~I~vwd~~~~~~--~~~l~~--~~~~v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
.|++|++.++.. ...+.. +...+.++.|+|||++++..+.++ .|++||+.++.. .....+....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCC
Confidence 399999987752 233333 334588999999999988877554 799999987421 1022222222
Q ss_pred CCCCCCeEEEEEecCCCEEEE-Ee----cCcEEEEeCCCC-ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 581 VPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~-~~----dg~I~iwd~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
..+... ++|+|+.|+. +. ++.|.+||+.++ .....+..+ +...+.+++|+ ++.++++...|+..+||
T Consensus 317 ----~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 317 ----KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 234444 3588988876 43 346999999875 233444432 34556678887 66778888899987777
Q ss_pred EcC-CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE-EEE---CCCcEEEEecCCCce
Q 004683 655 DTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 714 (737)
Q Consensus 655 d~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~V~iWd~~~~~~ 714 (737)
.+. +++....+... ....+..++++| ++..++ +.+ ..++|++||+.+++.
T Consensus 390 ~~~~~g~~~~~l~~~---------~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLP---------GIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTSCEEEECBCS---------SSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeCCCCceeeccCC---------CCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 654 45544444321 112344889999 666444 333 347899999988763
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=2.1e-09 Score=110.19 Aligned_cols=266 Identities=12% Similarity=0.065 Sum_probs=180.8
Q ss_pred cCCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 347 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 347 ~spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
..++|...++...++.|.+|+.. +....+.++. +...+.+++++++|...++...++.|..||.. +.
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~----- 93 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG----- 93 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-----
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-----
Confidence 67889988887788999999876 2233333443 45789999999999977776667888887754 11
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEE-ecCCCCCeEEEEEcC
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP 502 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~ 502 (737)
...... ......+.++++. |+++++.. ++.|..+|.. ++.... +......+.++++.+
T Consensus 94 ----------------~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 94 ----------------FTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp ----------------EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT
T ss_pred ----------------eEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC
Confidence 111001 0133568889988 66666665 7899999987 655432 233456788999999
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEE-EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~-l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
++ ..++...++.|..+|. +++.... ...+...+.+++++++|+..++....+.|.+||... .... .. ... .
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~---~~-~~~-~ 228 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EISE---YD-IPT-P 228 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEEE---EE-CSS-T
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cEEE---EE-CCC-C
Confidence 99 6666666789999998 5654432 223445688999999998777766677899999843 2111 11 121 1
Q ss_pred CCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 581 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
. ..+.+++++++|+..++. .++.|..||. ++... .+........+.+++++++|++.++.. . .|..++..
T Consensus 229 ~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 229 N---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp T---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred C---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 2 568899999999866665 5689999998 45443 332222345688999999998666554 4 77777653
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=3.3e-10 Score=117.30 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=162.1
Q ss_pred CCCeEEEEEecCCCEEEE-------EECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE
Q 004683 388 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 460 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s-------~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~ 460 (737)
-....+++|+++|..+++ ++.++.|.+|+..++.. ..+... . ..++...+.+++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----------~~~~~~--~------~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------TVICKP--E------VNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------EEEECC--E------ETTEECCEEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----------EEEEec--c------cCCCCCCCceEE
Confidence 345789999999987777 56788898887653321 001100 0 002445688999
Q ss_pred Ee-C-CEEEEEe-CCeEEEEECCCCcEEEE-ecC----CCCCeEEEEEcCCC-eEEEEECC---------------CeEE
Q 004683 461 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FAN----PPPIATYFILLPQD-LFAFGFDD---------------SSIL 516 (737)
Q Consensus 461 ~s-~-~~l~s~s-dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~-~l~sgs~d---------------g~I~ 516 (737)
++ . ..+..+. ++.|.+||.. ++.... ... ....+.+++++++| .+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 98 5 6666665 6689999998 765433 221 12347899999999 65555544 5788
Q ss_pred EEecCCCcEEEEEcCCCcceEEEEEe----CCCCEEEEE-eCCCcEEEEeCC-CCceeeceeeeecccCCCCCCCCeEEE
Q 004683 517 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI 590 (737)
Q Consensus 517 vwd~~~~~~~~~l~~~~~~v~~l~~s----p~g~~l~s~-s~dg~I~lwdl~-~~~~~~~~~~~~~~~~~~~~~~~v~~l 590 (737)
.||.. ++...... +......++++ |+++.++.+ ..++.|.+||+. ++..........+..... ..+..+
T Consensus 157 ~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~i 231 (314)
T 1pjx_A 157 CFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGM 231 (314)
T ss_dssp EECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEE
T ss_pred EECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC---CCCCce
Confidence 88876 55443332 33456889999 999765555 567899999986 332211112221221110 246789
Q ss_pred EEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEEcCC
Q 004683 591 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTST 658 (737)
Q Consensus 591 ~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s-gs~dg~I~vwd~~~ 658 (737)
+++++|+..++. .++.|.+||..+++.+..+.. +...+.+++|+|+|+.|++ ...++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888775 678999999987777666644 3577999999999995554 45568999999875
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=1.7e-10 Score=123.62 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=184.7
Q ss_pred cCCCCCEEEEEecC-----CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCc
Q 004683 347 SLPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 411 (737)
Q Consensus 347 ~spdg~~la~~s~d-----g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s----------~dg~ 411 (737)
..|+++.+...... +.|.++|..+ .+.... ++- -..+ .+++||||++|+.+. .++.
T Consensus 80 p~~~~~~vyV~n~~~~~~~~~VsVID~~t----~~vv~~-I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 80 PAPDARRVYIQDPAHFAAITQQFVIDGST----GRILGM-TDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCCCTTEEEEEECTTTCSSEEEEEEETTT----TEEEEE-EEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCEEEEECCCcCCCCCeEEEEECCC----CEEEEE-EEC--CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 34677766666553 6899999885 333322 221 1234 899999999888876 3567
Q ss_pred EEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCC--C---CCCCeEEEEEe--CCEEEEEe---CCeEEEEECCC
Q 004683 412 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLET 481 (737)
Q Consensus 412 i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~---h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~ 481 (737)
|.++|..+ ++.+...... . .......++++ |++++++. ++.|.+.|+.+
T Consensus 151 VsviD~~t---------------------~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 151 VEVFDPVT---------------------FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp EEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEECCC---------------------CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 77776653 3322221110 0 01233467888 88888876 47899999999
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEE----cCCCcce-EEEEEeCCCCEEEEEeCC
Q 004683 482 FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGAD 554 (737)
Q Consensus 482 ~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l----~~~~~~v-~~l~~sp~g~~l~s~s~d 554 (737)
++.+..+.-.. +....|++ .+++.+.||.+.+.+..+++..... .....++ ..+.+.+++..++..+..
T Consensus 210 ~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~ 285 (426)
T 3c75_H 210 KTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT 285 (426)
T ss_dssp TEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT
T ss_pred CeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC
Confidence 99998886422 23445555 6667778888888888666554321 1111121 235679999888888888
Q ss_pred CcEEEEeCCCCceeeceeeee-----cccCCCCCCCCeEEEEEecCCCEEEEE-e----------cCcEEEEeCCCCcee
Q 004683 555 AQLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHT 618 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~~~-~----------dg~I~iwd~~~~~~~ 618 (737)
+.|.+.|+.+........... +..+..+ .....++++|+++.+++. . ++.|.++|..+++.+
T Consensus 286 g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv 363 (426)
T 3c75_H 286 GKIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI 363 (426)
T ss_dssp SEEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CcEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence 999999997643211111110 0011000 222347899999887764 2 357999999999999
Q ss_pred EEecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEEcCCCeeEEEE
Q 004683 619 SQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 619 ~~~~~~~h~~~v~~~~~sp~~~-~l~sgs-~dg~I~vwd~~~~~~~~~~ 665 (737)
.++.. .....++.|+|||+ .+++.. .++.|.|+|..+++.+.++
T Consensus 364 ~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 364 NKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 98865 33588999999999 888887 5899999999999999887
No 208
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=7.5e-10 Score=127.59 Aligned_cols=292 Identities=12% Similarity=0.053 Sum_probs=184.5
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCC-CCCe-EEEEEeCCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSI-SCFALRGSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h-~~~V-~~v~~s~~~l~s~s-dg~i~v 476 (737)
+..++.++.++.|.-+|..+++. +|............ .. ...+ ..+++.+..+++++ |+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence 55677788888999998876544 56644321110000 00 0011 12334467777777 999999
Q ss_pred EECCCCcEEEEecCC--CCCeEEEEEcC---CCeEEEEE------CCCeEEEEecCCCcEEEEEcCCC------------
Q 004683 477 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------ 533 (737)
Q Consensus 477 wd~~~~~~~~~~~~~--~~~v~~~~~s~---~~~l~sgs------~dg~I~vwd~~~~~~~~~l~~~~------------ 533 (737)
+|..+|+.+..+... ......+..+| ++.+++++ .++.|+.||..+|+.+..+....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999998887642 11111111122 45444443 36899999999999887764210
Q ss_pred -------------------cceEEEEEeCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeceeeee
Q 004683 534 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 534 -------------------~~v~~l~~sp~g~~l~s~s~dg~-------------------I~lwdl~~~~~~~~~~~~~ 575 (737)
.....++++|++..++.++.++. |..||.++++........
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~- 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT- 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence 01125788998899999887763 999999998655432221
Q ss_pred cccCCCC----CCCCeEEEEEecCCC---EEEE-EecCcEEEEeCCCCceeEEecCCCC---------------------
Q 004683 576 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM--------------------- 626 (737)
Q Consensus 576 ~~~~~~~----~~~~v~~l~~sp~g~---~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h--------------------- 626 (737)
.|.. ...++.......+|+ .++. +.+|.++++|..+|+++........
T Consensus 295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1100 001222223334564 5555 5889999999999998744322110
Q ss_pred ----------------CCCeEEEEEccCCCEEEEEec-------------------------------------------
Q 004683 627 ----------------DLPITYATYSCDGKCIYVSCK------------------------------------------- 647 (737)
Q Consensus 627 ----------------~~~v~~~~~sp~~~~l~sgs~------------------------------------------- 647 (737)
...-..++|+|+..+++++..
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 001123788998888887632
Q ss_pred --CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 648 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 648 --dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
+|.|+.||+.+|+.+..+.... ... .-.+.. .+.++++|+.||.|+.||..+++.+|....+
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~---------~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVT---------IFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESS---------SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceeEEEEECCCCCeEeEccCCC---------Ccc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 3789999999999998876431 111 123334 5679999999999999999999999988543
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=4.2e-10 Score=118.90 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=129.0
Q ss_pred CCeEEEEEe--CCEEEEEeCCeEEEEECCCCc-----------EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEe
Q 004683 454 DSISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 519 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd 519 (737)
..++.++++ .+++++|+...+++|++.+.. ..... .+.. |+.++| ++ .|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368889999 788888885577779875432 11222 3555 999999 77 88888 889999999
Q ss_pred cCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 520 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 520 ~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
+.+.........|...+.++.+.+.. +++++.||.|.+||+.++... .+. ..|++++|||+| ..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eE
Confidence 98776666666677888888776543 888999999999999975431 111 579999999999 44
Q ss_pred EEEecCcEEEEeCCCCce--eEEecC-------CCCCCCeEEEEEccCCCEEEE
Q 004683 600 LSIHEGQIDVYEAPTLNH--TSQLVP-------DKMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 600 ~~~~dg~I~iwd~~~~~~--~~~~~~-------~~h~~~v~~~~~sp~~~~l~s 644 (737)
+++.||++++|+...+.. ..++.. ..|...|.+++|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446999999999877765 555521 125788999999999999986
No 210
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.31 E-value=8.7e-10 Score=126.81 Aligned_cols=293 Identities=10% Similarity=0.027 Sum_probs=187.6
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 478 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd 478 (737)
+..++.++.++.|.-+|..+++. +|..+...................+++.+..++.++ |+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 44577777788888888875543 566543321100000000000113344566777777 99999999
Q ss_pred CCCCcEEEEecCC-C----CCeEE-EEEcCCCeEEEEEC------CCeEEEEecCCCcEEEEEcCCCcc-----------
Q 004683 479 LETFQTLATFANP-P----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR----------- 535 (737)
Q Consensus 479 ~~~~~~~~~~~~~-~----~~v~~-~~~s~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~~~----------- 535 (737)
..+|+.+..+..+ . ..+.+ ..+ .++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 9999999888754 2 11211 111 1345555543 689999999999998777532111
Q ss_pred ---------------------eEEEEEeCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeceeeee
Q 004683 536 ---------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 575 (737)
Q Consensus 536 ---------------------v~~l~~sp~g~~l~s~s~dg-------------------~I~lwdl~~~~~~~~~~~~~ 575 (737)
...++++|++..++.++.++ .|..+|.++++........
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~- 302 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET- 302 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-
Confidence 13578899999998887664 4999999997654432221
Q ss_pred cccCCC----CCCCCeEEEEEecCC---CEEEE-EecCcEEEEeCCCCceeEEecCCCCC---------CCe--------
Q 004683 576 FQTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD---------LPI-------- 630 (737)
Q Consensus 576 ~~~~~~----~~~~~v~~l~~sp~g---~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~---------~~v-------- 630 (737)
.|. ........+....+| ..+++ +.+|.++++|..+|+.+..+...... ..+
T Consensus 303 ---~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 303 ---PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp ---TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred ---CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 110 000223333444577 55666 58899999999999988766432100 001
Q ss_pred ----------------EEEEEccCCCEEEEEecC-------------------------------------------CeE
Q 004683 631 ----------------TYATYSCDGKCIYVSCKS-------------------------------------------GHV 651 (737)
Q Consensus 631 ----------------~~~~~sp~~~~l~sgs~d-------------------------------------------g~I 651 (737)
..++++|++.++++...+ |.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 157889998888876432 789
Q ss_pred EEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 652 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 652 ~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
..||+.+++.+..+... ...+ ...+.. ++.++++++.||.+++||..+++..|....+
T Consensus 460 ~A~D~~tG~~~W~~~~~---------~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVEHV---------SPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEeCCCCcEEeecCCC---------CCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 99999999999887632 1122 233444 5678888999999999999999999988654
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=1.7e-09 Score=111.48 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=147.0
Q ss_pred CCeEEEEEecCCCE-EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004683 389 GRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 465 (737)
Q Consensus 389 ~~V~~v~fspdg~~-L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 465 (737)
.-..+..|+|++.. +++...++.|..|+..++.. ..| .....+.+++++ |+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~--------------~~~~~~~~i~~~~dG~- 66 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRV--------------TMDAPVSSVALRQSGG- 66 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEE--------------ECSSCEEEEEEBTTSS-
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEE--------------eCCCceEEEEECCCCC-
Confidence 34568999996554 44445578888887653211 111 134678899999 66
Q ss_pred EEEEeCCeEEEEECCCCcEEEEecC----CCCCeEEEEEcCCC-eEEEEEC-----------CCeEEEEecCCCcEEEEE
Q 004683 466 LFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 466 l~s~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~-~l~sgs~-----------dg~I~vwd~~~~~~~~~l 529 (737)
++.+.++.|.+||..+++....... ....+..++++|+| .+++... .+.|..++.. ++... +
T Consensus 67 l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 67 YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 5555577899999988765443322 12357889999999 5444322 1345555543 33333 3
Q ss_pred cCCCcceEEEEEeCCCCEEE-EEeCCCcEEEEeC--CCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC
Q 004683 530 KGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 605 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~-s~s~dg~I~lwdl--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg 605 (737)
..+....+.++|+|+++.++ +.+.++.|.+||+ .++.....+.+..+... . ..+..++++++|++.++. ..+
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-E---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-G---CEEEEEEEBTTSCEEEEEETTT
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-C---CCCCeeEECCCCCEEEEEcCCC
Confidence 22344568999999998765 4555788999987 34433222222222211 1 467889999999877775 567
Q ss_pred cEEEEeCCCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 004683 606 QIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 647 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~ 647 (737)
.|.+||..+++.+..+..+ ...+++++|+ |+++.|++++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 8999999989988888652 4679999998 88887776554
No 212
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=5.2e-09 Score=111.58 Aligned_cols=304 Identities=10% Similarity=-0.015 Sum_probs=184.9
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCcee-eeecCCCC---C--CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCccc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 423 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~-~~~l~~~~---h--~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~ 423 (737)
++..+.+++.++.|..+|..+ ++.. ...+.... + ...+.+ ....++..++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE-
T ss_pred ECCEEEEEcCCCeEEEEEccC----CceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE-
Confidence 567788888889999999874 3322 22232100 0 122322 2223456788888999999888775433
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCe-----EE
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TY 497 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v-----~~ 497 (737)
+|....+. .........+..++.++ ++.|..+|..+|+.+..+....... ..
T Consensus 126 -----------~W~~~~~~-----------~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 126 -----------AWQTKVAG-----------EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp -----------EEEEECSS-----------CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred -----------EEEEeCCC-----------ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 35432211 11111223366777777 8999999999999888776432211 11
Q ss_pred EEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcc-------eEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCcee
Q 004683 498 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-------ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKL 568 (737)
Q Consensus 498 ~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~-------v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~ 568 (737)
.... ++.+++++.++.+..+|..+|+.+......... +..+...| .+..++.++.++.+..+|..+++..
T Consensus 184 ~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 184 PTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp CEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred cEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 1222 347778888999999999999987766432100 00011111 2467788888999999999986543
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
..... .....+... ++..++++.++.|..+|..+++.+....... ...+..... .+..|++++.+
T Consensus 263 w~~~~-----------~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 263 WKREL-----------GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp EEECC-----------CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred eeccC-----------CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence 32211 223344443 3344444678999999999999877664211 222222332 35688899999
Q ss_pred CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 649 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 649 g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
|.|+++|..+|+.+...... ...+.. .... .+..|..++.+|.|..|+.
T Consensus 328 g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 99999999999988877542 111111 1111 2357888889999999873
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=2.3e-09 Score=115.69 Aligned_cols=246 Identities=9% Similarity=-0.045 Sum_probs=161.0
Q ss_pred CCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCC--eEEEEecCCCcEEE
Q 004683 454 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA 527 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg--~I~vwd~~~~~~~~ 527 (737)
.....++|+ ++++++.. ++.|++||..++......... .... ++|++++ .++++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467889998 55455544 689999999887766555443 2333 8999999 888888766 89999987765544
Q ss_pred EE----cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E
Q 004683 528 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 602 (737)
Q Consensus 528 ~l----~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~ 602 (737)
.+ ......+.+++++|++..|+++..++.|+.||..++......... ..+... ..+...++|+|++..|++ .
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--~~g~~~-~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--LSGSLG-TNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--CCSCCC-CSSCCEEEEETTTTEEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--ccCCCC-CCccccEEEeCCCCEEEEEe
Confidence 44 224466788999995555666777889999999874321110000 111110 011239999996555554 3
Q ss_pred -ecCcEEEEeCCCCceeEEecCCC-------------CCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEec
Q 004683 603 -HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 603 -~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.++.|+.|+.... +..+.+.. .-.....++++|+|+++++-+ .++.|+.|++.++...... .
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~-g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-G 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE-E
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe-C
Confidence 6789999998533 22332211 024578999999999888877 8899999998888754333 2
Q ss_pred ccccCCCCcc------CceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 668 TAYAQPGTIS------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 668 ~~~~~~g~~~------~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
+... .|..+ .-..+..++++| ++.++++-..++.|+.+.+
T Consensus 363 ~~~~-~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDV-ASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTC-BSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCC-CCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 2000 01000 012366999999 6888888888889988775
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=7.9e-10 Score=127.14 Aligned_cols=280 Identities=11% Similarity=0.073 Sum_probs=183.0
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCC-eeeeeccCCCCCCCeE-EEEEeCCEEEEEe------
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------ 470 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~-~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s------ 470 (737)
++..++.++.|+.+..+|..+++. +|....+ ... ....+. .....+..++.++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKE------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYG 187 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCE------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccC
Confidence 456788889999999999876544 4654332 100 001111 1112345555543
Q ss_pred -CCeEEEEECCCCcEEEEecCCCCC--------------------------------eEEEEEcCCC-eEEEEECCC---
Q 004683 471 -GGKISIFSLETFQTLATFANPPPI--------------------------------ATYFILLPQD-LFAFGFDDS--- 513 (737)
Q Consensus 471 -dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~s~~~-~l~sgs~dg--- 513 (737)
+|.|+.+|..+|+.+..+...... ...++++|++ .++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW 267 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence 589999999999999887632211 1356788888 888777664
Q ss_pred ----------------eEEEEecCCCcEEEEEcC--CC-------cceEEEEEeCCC---CEEEEEeCCCcEEEEeCCCC
Q 004683 514 ----------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGW 565 (737)
Q Consensus 514 ----------------~I~vwd~~~~~~~~~l~~--~~-------~~v~~l~~sp~g---~~l~s~s~dg~I~lwdl~~~ 565 (737)
.|..+|..+|+.+..++. |. .....+....+| ..++.++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877754 21 122233344477 67899999999999999998
Q ss_pred ceeeceeeeecc-------cC------------CC----C---CCCCeEEEEEecCCCEEEEE-ec--------------
Q 004683 566 KKLCSKFLHSFQ-------TG------------LV----P---ETTIVNHIQFHPDQIHLLSI-HE-------------- 604 (737)
Q Consensus 566 ~~~~~~~~~~~~-------~~------------~~----~---~~~~v~~l~~sp~g~~l~~~-~d-------------- 604 (737)
+.+....+.... .+ +. + +...-..++++|++..+++. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 765433321000 00 00 0 00011257899998888763 31
Q ss_pred -----------------------------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 605 -----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 605 -----------------------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
|.|..||+.+++.+-++.. ..++.+..++.++..+++++.||.+++||
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 7799999999998877753 33455566778888999999999999999
Q ss_pred cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEEC----------------CCcEEEEecC
Q 004683 656 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLT----------------NGRVHVIEPL 710 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~----------------Dg~V~iWd~~ 710 (737)
..+|+.+..+... ..+...-+.|.+ +|+ ++++.+. .+.+.+|.+.
T Consensus 505 ~~tG~~lw~~~~~---------~~~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 505 AATGEKLWEAPTG---------TGVVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCCceeeeeeCC---------CCcccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 9999999998742 112233566767 565 4444333 3678888876
No 215
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=1.7e-09 Score=124.74 Aligned_cols=313 Identities=11% Similarity=0.049 Sum_probs=191.0
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCC-----CC-CCe-EEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~-----h~-~~V-~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.+..+++++.++.|.-+|..++ ...-.+...... .. ..+ ..+++ ++..++.++.|+.+..+|..+++.
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDG---RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEECCCC---ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE
Confidence 3566777777888888887642 222222111100 00 001 11222 356788888999999999876544
Q ss_pred cccccceeeeeEEeecCCC-eeeeeccCCCCCCCeE-EEEEeCCEEEEEe-------CCeEEEEECCCCcEEEEecCC--
Q 004683 423 SLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANP-- 491 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~-~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-------dg~i~vwd~~~~~~~~~~~~~-- 491 (737)
+|..... .. .....+. +....+..++.++ +|.|+.||..+|+.+..+...
T Consensus 144 ------------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 204 (689)
T 1yiq_A 144 ------------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204 (689)
T ss_dssp ------------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred ------------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence 4654332 00 0001111 1112344454443 579999999999998877521
Q ss_pred C-----------------------------CCeEEEEEcCCC-eEEEEECCCe-------------------EEEEecCC
Q 004683 492 P-----------------------------PIATYFILLPQD-LFAFGFDDSS-------------------ILVHCPCT 522 (737)
Q Consensus 492 ~-----------------------------~~v~~~~~s~~~-~l~sgs~dg~-------------------I~vwd~~~ 522 (737)
. .....++++|++ .++.++.++. |..+|.++
T Consensus 205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 0 011257888888 8888887764 99999999
Q ss_pred CcEEEEEcC--CC-------cceEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCceeeceeeeec--------------
Q 004683 523 KKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF-------------- 576 (737)
Q Consensus 523 ~~~~~~l~~--~~-------~~v~~l~~sp~g~---~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~-------------- 576 (737)
|+.+..++. |. .++.......+|+ .++.++.+|.++++|.++++.+....+...
T Consensus 285 G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi 364 (689)
T 1yiq_A 285 GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPI 364 (689)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEE
T ss_pred CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcc
Confidence 999887764 21 1222223333665 788899999999999999876532221100
Q ss_pred ---------ccCCC----C---CCCCeEEEEEecCCCEEEEE-e------------------------------------
Q 004683 577 ---------QTGLV----P---ETTIVNHIQFHPDQIHLLSI-H------------------------------------ 603 (737)
Q Consensus 577 ---------~~~~~----~---~~~~v~~l~~sp~g~~l~~~-~------------------------------------ 603 (737)
..+.. + +...-..++++|+...+++. .
T Consensus 365 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 444 (689)
T 1yiq_A 365 LDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAE 444 (689)
T ss_dssp ECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHH
T ss_pred cchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccc
Confidence 00000 0 00112247889988777763 2
Q ss_pred ---------cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCC
Q 004683 604 ---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 674 (737)
Q Consensus 604 ---------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g 674 (737)
+|.|..||+.+++.+-++.. ...+....++..+.++++|+.||.++.||.++|+.+..+...
T Consensus 445 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~------ 515 (689)
T 1yiq_A 445 GLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA------ 515 (689)
T ss_dssp HHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS------
T ss_pred cCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC------
Confidence 37799999999998877754 233344466778889999999999999999999999988642
Q ss_pred CccCceeeEEEEEccCCCC-EEEEEE
Q 004683 675 TISLELYPLVIAAHPLEPN-RIALGL 699 (737)
Q Consensus 675 ~~~~~v~~~~v~~sp~d~~-~las~s 699 (737)
..+...-+.|.. +|+ |+++.+
T Consensus 516 ---~~~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 516 ---SGVMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp ---SCCCSCCEEEEE-TTEEEEEEEE
T ss_pred ---CCcccCceEEEE-CCEEEEEEEe
Confidence 112223466766 565 445443
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=3.9e-09 Score=108.69 Aligned_cols=222 Identities=12% Similarity=0.019 Sum_probs=145.3
Q ss_pred CCeEEEEEe--CCEE-EEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE
Q 004683 454 DSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 454 ~~V~~v~~s--~~~l-~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~ 528 (737)
.-..+..|+ ++.+ ++.. ++.|..||..+++. ..+. ....+.+++++++| ++++ . ++.|.+||..+++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 345577888 4444 4444 78999999987765 3332 34678999999999 5544 3 57899999988765433
Q ss_pred EcC----CCcceEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC
Q 004683 529 LKG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 595 (737)
Q Consensus 529 l~~----~~~~v~~l~~sp~g~~l~s~s~d---------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 595 (737)
... ....++.++++|+|++.++...+ ..-.+|.+...... .. +.... .....++|+|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~---~~~~~----~~pngi~~spd 159 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--KK---YFDQV----DISNGLDWSLD 159 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--EE---EEEEE----SBEEEEEECTT
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE--EE---Eeecc----ccccceEEcCC
Confidence 321 12457899999999976654322 23345544431111 11 11111 35678999999
Q ss_pred CCEEEEE--ecCcEEEEeC--CCCcee--EEec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecc
Q 004683 596 QIHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 668 (737)
Q Consensus 596 g~~l~~~--~dg~I~iwd~--~~~~~~--~~~~-~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 668 (737)
++.++++ .++.|.+||+ .++... ..+. ...+...+..++++++|++.++...++.|.+||..+++.+..+...
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 9987764 5788999987 455432 1121 1112356789999999998888888899999999999988877532
Q ss_pred cccCCCCccCceeeEEEEEc-cCCCCEEEEEE
Q 004683 669 AYAQPGTISLELYPLVIAAH-PLEPNRIALGL 699 (737)
Q Consensus 669 ~~~~~g~~~~~v~~~~v~~s-p~d~~~las~s 699 (737)
. ..+++++|. | +++.|..++
T Consensus 240 --------~--~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 240 --------V--DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --------S--SBEEEEEEESG-GGCEEEEEE
T ss_pred --------C--CCceEEEEeCC-CCCEEEEEc
Confidence 1 235599998 7 555544333
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=3e-09 Score=114.00 Aligned_cols=276 Identities=15% Similarity=0.045 Sum_probs=177.3
Q ss_pred cCCCEEEEEECC-----CcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004683 398 HSGDFLVALTQT-----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 470 (737)
Q Consensus 398 pdg~~L~s~s~d-----g~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 470 (737)
|++++++.+... ++|.+.| ..+++++.....+ ..+ .++++ |++++++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID---------------------~~t~~vv~~I~vG--~~P--gia~SpDgk~lyVan 136 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVID---------------------GSTGRILGMTDGG--FLP--HPVAAEDGSFFAQAS 136 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEE---------------------TTTTEEEEEEEEC--SSC--EEEECTTSSCEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEE---------------------CCCCEEEEEEECC--CCC--ceEECCCCCEEEEEe
Confidence 577766666552 4665555 4444444433322 233 78899 77665553
Q ss_pred -----------CCeEEEEECCCCcEEEEecCC-------CCCeEEEEEcCCC-eEEEEEC--CCeEEEEecCCCcEEEEE
Q 004683 471 -----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 471 -----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~-~l~sgs~--dg~I~vwd~~~~~~~~~l 529 (737)
++.|.++|..+++.+..+.-. ......+.++||| +++++.. ++.|.+.|+.+++.+..+
T Consensus 137 ~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 137 TVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 468999999999998887521 1234578999999 8887764 578999999999988887
Q ss_pred cCCCcceEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcE
Q 004683 530 KGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 607 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I 607 (737)
..... ....|++ +.+++.+.||.+.+.+..+++...... ..+..+.. .....+.+++++..++. +..+.|
T Consensus 217 ~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~---p~~~~~~~~~dg~~~~~~s~~g~V 288 (426)
T 3c75_H 217 DVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE---LLINHPAFSLRSGRLVWPTYTGKI 288 (426)
T ss_dssp ECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS---CBCSCCEECTTTCEEEEEBTTSEE
T ss_pred EcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC---ceeeEeeecCCCCEEEEEeCCCcE
Confidence 64221 2333433 556667778888877875433221100 11111111 11124567898877665 567899
Q ss_pred EEEeCCCCcee--EEecCC--C------CCCCeEEEEEccCCCEEEEEec----------CCeEEEEEcCCCeeEEEEec
Q 004683 608 DVYEAPTLNHT--SQLVPD--K------MDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 608 ~iwd~~~~~~~--~~~~~~--~------h~~~v~~~~~sp~~~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+.|....... ..+... . .......++++|+++.+++... ++.|.+.|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111100 0 0111223689999988777643 35799999999999998864
Q ss_pred ccccCCCCccCceeeEEEEEccCCCC-EEEEEE-CCCcEEEEecCCCceeeee
Q 004683 668 TAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 668 ~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~V~iWd~~~~~~~w~~ 718 (737)
. . .+.+++|+| |++ +++++. .++.|.|+|..+.+..-..
T Consensus 369 g---------~--~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 G---------H--EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp E---------E--EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred C---------C--CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 2 1 244899999 787 777777 5899999999998866443
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=4.5e-10 Score=118.68 Aligned_cols=188 Identities=12% Similarity=0.002 Sum_probs=134.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 468 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s 468 (737)
.++..+++++...++++|+.+ .+.+|++...... .. .... +.+.. ... .+.. |+.++|.+++|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~-~~-~~~~-----~~~~~-~~~-----~lp~-V~~l~fd~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH-IT-SDST-----PLTFK-WEK-----EIPD-VIFVCFHGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH-HH-SSSC-----CCCCS-EEE-----ECTT-EEEEEEETTEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh-hc-cccc-----cccce-EEe-----eCCC-eeEEEECCCEEEE
Confidence 378999999999999999987 4556987643210 00 0000 00000 111 2556 9999998888888
Q ss_pred EeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE
Q 004683 469 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 548 (737)
Q Consensus 469 ~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l 548 (737)
+.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| +
T Consensus 103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 88999999999887666666677777887776654 48888999999999999887654 44689999999999 7
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeee---eccc--CCCCCCCCeEEEEEecCCCEEEE
Q 004683 549 VSSGADAQLCVWDAVGWKKLCSKFLH---SFQT--GLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 549 ~s~s~dg~I~lwdl~~~~~~~~~~~~---~~~~--~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
+.|..||++++|+....+......+. .+.. +|. ..|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 78999999999998875431111111 0111 233 78999999999999987
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=1.1e-08 Score=108.93 Aligned_cols=284 Identities=9% Similarity=0.015 Sum_probs=174.8
Q ss_pred CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-CCeEEE
Q 004683 399 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 476 (737)
Q Consensus 399 dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-dg~i~v 476 (737)
++..+++++.++.|..+|..+++. +|....+..... . ......+. .+...+..++.++ ++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGW-F-SKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---C-C-SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------------eeeecCcccccc-c-cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 356788888889999888775443 454332211000 0 00022332 3333477777777 899999
Q ss_pred EECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcce-----EEEEEeCCCCEEEEE
Q 004683 477 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 551 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v-----~~l~~sp~g~~l~s~ 551 (737)
+|..+|+.+................ ++.+++++.++.|..+|..+|+.+.......... ...... +..++++
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g 194 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG 194 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence 9999999887776443222122222 3478888899999999999999887765422111 112222 4567888
Q ss_pred eCCCcEEEEeCCCCceeeceeeeecccCCCCCCCC---e-EEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCC
Q 004683 552 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD 627 (737)
Q Consensus 552 s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~---v-~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~ 627 (737)
+.++.|..+|..+++........ .+.+... ... + ...... ++..++.+.++.+..+|..+++.+.....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---- 267 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL---- 267 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC----
T ss_pred cCCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC----
Confidence 88999999999987654433222 0000000 000 0 011111 34334445789999999999998766642
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 707 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW 707 (737)
.....+.. ++..++.++.++.|+.+|..+|+.+...... + ..... .... .+..|..++.+|.|.++
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEEE
Confidence 23444433 4678888889999999999999988776521 0 11111 1222 23578888899999999
Q ss_pred ecCCCceeeeecC
Q 004683 708 EPLESEVEWGKLP 720 (737)
Q Consensus 708 d~~~~~~~w~~~~ 720 (737)
|..+++..|....
T Consensus 334 d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 334 NVEDGRFVAQQKV 346 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999998754
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=2e-08 Score=104.86 Aligned_cols=214 Identities=11% Similarity=0.032 Sum_probs=140.1
Q ss_pred eEEEEEe--CC-EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEc
Q 004683 456 ISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 456 V~~v~~s--~~-~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~ 530 (737)
..+.+|+ ++ ++++.. ++.|..||..+++.. .+. ....+.+++++++| .+++ +. ..|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEee
Confidence 4567787 34 444544 789999999877543 333 24578999999999 5554 44 459999998887543322
Q ss_pred C----CCcceEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 531 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 531 ~----~~~~v~~l~~sp~g~~l~s~s~------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
. ....+++++++|+|++.++... .+.|..+| +++.. . +..+. .....++|+|+|+.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~---~~~~~----~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---K---LFADI----SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---E---EEEEE----SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---E---eeCCC----cccCCeEEcCCCCEEE
Confidence 1 1246889999999997665542 24565566 33211 1 11111 3567899999998876
Q ss_pred EE--ecCcEEEEeCC--CC-ce-----eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccc
Q 004683 601 SI--HEGQIDVYEAP--TL-NH-----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 670 (737)
Q Consensus 601 ~~--~dg~I~iwd~~--~~-~~-----~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 670 (737)
.+ .++.|.+||+. ++ .. ...+. .....+.+++++++|.+.++...++.|.+|+. +++.+..+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~-- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP-- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--
Confidence 64 46899999986 55 32 22221 12455788999999998877777789999998 56666665432
Q ss_pred cCCCCccCceeeEEEEEc-cCCCCEEEEEE
Q 004683 671 AQPGTISLELYPLVIAAH-PLEPNRIALGL 699 (737)
Q Consensus 671 ~~~g~~~~~v~~~~v~~s-p~d~~~las~s 699 (737)
.. .+.+++|+ | ++..|..++
T Consensus 270 ------~~--~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 270 ------GK--QTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp ------CS--BEEEEEEEST-TSCEEEEEE
T ss_pred ------CC--CcEEEEEecC-CCCEEEEEe
Confidence 21 24589998 7 666554443
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=4.5e-09 Score=113.34 Aligned_cols=239 Identities=10% Similarity=-0.021 Sum_probs=156.1
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
.....++|+|+|+.+++...++.|++||..++ .+..... ...... ++|+ ++.+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---------------------~~~~~~~---~~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---------------------KVTTVHP---GFKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---------------------EEEEEEE---TCCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---------------------EEEEeec---cCCCCc-eeEecCCCcE
Confidence 46889999999997777766788988876532 2221111 112223 7888 7777
Q ss_pred EEEe-CC--eEEEEECCCCcEEEEe----cCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEE----EcCCCc
Q 004683 467 FSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK----LKGHQN 534 (737)
Q Consensus 467 ~s~s-dg--~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~----l~~~~~ 534 (737)
+++. ++ .|.+|+..++.....+ ......+.+++++|++ .|+++..++.|+.||..++..... ..++..
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 7777 44 8999998766554444 2244567889999955 655577788999999987764322 222222
Q ss_pred ce--EEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeec-ccCCCC------CCCCeEEEEEecCCCEEEE-E-
Q 004683 535 RI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVP------ETTIVNHIQFHPDQIHLLS-I- 602 (737)
Q Consensus 535 ~v--~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~-~~~~~~------~~~~v~~l~~sp~g~~l~~-~- 602 (737)
.- ..++|+|+ +.++++...++.|+.||...... ...... ..+... .-.....++++|+|+++++ .
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 38999995 65666666788999999875210 000000 000000 0035789999999996666 4
Q ss_pred ecCcEEEEeCCCCceeEEecCCC-------------CCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
.++.|+.||+.++... ++.+.. .-.....++++++|.++++-..++.|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 5789999998777643 332210 0245889999999888888888889988775
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=2.3e-08 Score=104.35 Aligned_cols=223 Identities=11% Similarity=-0.064 Sum_probs=142.4
Q ss_pred eEEEEEecCCCE-EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEE
Q 004683 391 VVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFS 468 (737)
Q Consensus 391 V~~v~fspdg~~-L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s 468 (737)
..+.+|+|++.. +++...++.|..|+..+ +..... .....+.+++|+ +..++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~---------------------~~~~~~----~~~~~v~~i~~~~dg~l~v 105 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS---------------------GRKTVH----ALPFMGSALAKISDSKQLI 105 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT---------------------TEEEEE----ECSSCEEEEEEEETTEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC---------------------CcEEEE----ECCCcceEEEEeCCCeEEE
Confidence 467899998554 44555577887777553 221111 133568899998 443444
Q ss_pred EeCCeEEEEECCCCcEEEEecC---C-CCCeEEEEEcCCC-eEEEEEC------CCeEEEEecCCCcEEEEEcCCCcceE
Q 004683 469 ASGGKISIFSLETFQTLATFAN---P-PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRIT 537 (737)
Q Consensus 469 ~sdg~i~vwd~~~~~~~~~~~~---~-~~~v~~~~~s~~~-~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~~~v~ 537 (737)
+.+..|.+||..+++....... . ...+..++++|+| .+++... .+.|..++ +++... +..+.....
T Consensus 106 ~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~ 182 (326)
T 2ghs_A 106 ASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPN 182 (326)
T ss_dssp EETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEE
T ss_pred EECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccC
Confidence 4555599999988876443321 1 2357899999999 5544332 24666666 455433 322334577
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEEeCC--CC-ceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeC
Q 004683 538 CLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 612 (737)
Q Consensus 538 ~l~~sp~g~~l~s~-s~dg~I~lwdl~--~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~ 612 (737)
.++|+|+|+.++.+ +.++.|.+||+. ++ .......+..+. ... ..+..++++++|.+.++. .++.|.+||.
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIK---GGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSS---SEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCC---CCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 89999999876555 457899999986 44 221111222121 111 456789999999877765 5688999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEc-cCCCEEEEEecC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 648 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~d 648 (737)
+++.+..+.. +...+++++|+ ++++.|++++..
T Consensus 259 -~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 259 -DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 6777777654 24569999998 888877655443
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.6e-09 Score=125.65 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=151.6
Q ss_pred CCCCeEEEEEecCCCEEEEEEC-----CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE
Q 004683 387 FGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 461 (737)
Q Consensus 387 h~~~V~~v~fspdg~~L~s~s~-----dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~ 461 (737)
|...+..++|||||++||.+.+ ..+|++||+.+ |+.+.... +......++|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~---~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------KQPLETPL---KDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------CSEEEEEE---EEEESCCCEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------CCCCcccc---CCceeccEEE
Confidence 5668899999999999886543 23566666553 33322111 0001234667
Q ss_pred e-CCEEEEEe-CC-------------eEEEEECCCCcE--EEEec--C-CCCCeEEEEEcCCC-eEE-EEEC---CCeEE
Q 004683 462 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFA--N-PPPIATYFILLPQD-LFA-FGFD---DSSIL 516 (737)
Q Consensus 462 s-~~~l~s~s-dg-------------~i~vwd~~~~~~--~~~~~--~-~~~~v~~~~~s~~~-~l~-sgs~---dg~I~ 516 (737)
+ |+.|+.++ +. .|++|++.++.. ...+. . +...+..+.|+||| +|+ +.+. +..|+
T Consensus 183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 7 77777776 53 499999987642 33333 3 44557889999999 554 3332 24899
Q ss_pred EEecCCCc-EEEEEcCCCcceEEEEEeCCCCEEEEEeC-C---CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEE
Q 004683 517 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGA-D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 591 (737)
Q Consensus 517 vwd~~~~~-~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-d---g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 591 (737)
++|+.++. ....+..+....... ++++|..++..+. + +.|..+|+.++.... .+.+.. +. ..+. .
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~---~~~l~~-~~---~~~~--~ 332 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH---WRDLIP-ER---QQVL--T 332 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEEC-CC---SSCE--E
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---cEEEec-CC---CCEE--E
Confidence 99998763 344555555555554 6666766655443 3 579999998743211 111222 22 2343 8
Q ss_pred EecCCCEEEEE--ecC--cEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEEcCCCeeE
Q 004683 592 FHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 662 (737)
Q Consensus 592 ~sp~g~~l~~~--~dg--~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d----g~I~vwd~~~~~~~ 662 (737)
|+++++.|+.+ .++ .|++||+..+ ....+... ....+..+.++++++.++....+ ++|+.||+.+++..
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 99999988873 444 6899999744 44455332 24567778888888877665544 89999999888643
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=6.3e-09 Score=107.51 Aligned_cols=228 Identities=8% Similarity=-0.007 Sum_probs=149.3
Q ss_pred CCCeEEEEEecCCCE-EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 388 GGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 388 ~~~V~~v~fspdg~~-L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
........|+|+|+. +++...++.|..|+... .. ..+. .+...+..++++ |+
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~-----------~~~~-------------~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV-----------DVLL-------------DATAFTNGNAVDAQQR 98 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE-----------EEEE-------------ESCSCEEEEEECTTSC
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE-----------EEEe-------------CCCCccceeeECCCCC
Confidence 456788999999994 45555678888886421 00 0111 245568889999 66
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEec---C-CCCCeEEEEEcCCC-eEEE----EEC-------------CCeEEEEecC
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFA---N-PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCPC 521 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~---~-~~~~v~~~~~s~~~-~l~s----gs~-------------dg~I~vwd~~ 521 (737)
++++.. ++.|.+|+.. ++...... + ....+..++++++| ..++ |.. .+.|..||..
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 555444 5789999986 55432221 1 11346679999999 6665 332 2568888887
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 595 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 595 (737)
+++..... .....+.++|+|+++.++.+... +.|.+||+..+.......+... .. ..+..++++++
T Consensus 178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~---~~---~~pdgi~~d~~ 249 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV---PD---GLPDGFCVDRG 249 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC---SS---SCCCSEEECTT
T ss_pred CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC---CC---CCCCeEEECCC
Confidence 77654433 33457889999999988777665 6899999876431111111111 11 34567899999
Q ss_pred CCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 596 QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 596 g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
|++.+++ .+.|.+|+. .++.+..+..+ ..+.+++|+|+++.|+.++.++ ++.++
T Consensus 250 G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 250 GWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 9955545 445999998 57777777542 2588999999999888887754 43333
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=3e-09 Score=112.04 Aligned_cols=270 Identities=8% Similarity=-0.054 Sum_probs=169.3
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004683 389 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 465 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~--dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 465 (737)
..+..++++|+|+.+++... ++.++||.+.+ |... .+. -|.. ...++-..+..++++ ...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-----g~~~-~~p--~~~~---------~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-----DGLI-PFP--PQSG---------NAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-----TEEE-ESC--CCCS---------SCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-----CCee-cCC--Cccc---------CcccceeEeeEEEEcCCCc
Confidence 57899999999998888643 34356666542 1100 000 0000 011366789999999 444
Q ss_pred EEEEe-------CCeEEEEECCCCcEEEEecCC------CCCeEEEEEcCCC-e-EEEEE---CCCeEEEEecCCCcEEE
Q 004683 466 LFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD-L-FAFGF---DDSSILVHCPCTKKTKA 527 (737)
Q Consensus 466 l~s~s-------dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~-l~sgs---~dg~I~vwd~~~~~~~~ 527 (737)
|..+. ++.|.+||+.+++.++.+..+ ...+..+++++++ . +++.. .++.|.+||+.+++...
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 44433 378999999999877776532 2346789999865 4 45544 57899999999888777
Q ss_pred EEcCCCcceE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec-
Q 004683 528 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 604 (737)
Q Consensus 528 ~l~~~~~~v~-~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d- 604 (737)
.+.+|..... ...+.++|..+.+.+.++.++.|. ..+..++|+|+|+.|+++ ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 7765432111 134455676666666777664442 235689999999988875 33
Q ss_pred CcEEEEeCC---CCc-----eeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc
Q 004683 605 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 676 (737)
Q Consensus 605 g~I~iwd~~---~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~ 676 (737)
..++.++.. .+. ....+...++......++++++|.+.++...++.|.+||..+++.......
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--------- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--------- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence 356665532 111 000000001123456799999999999999999999999866764333221
Q ss_pred cCceeeEEEEEccCCCCEEEEEECCCcEEEEe
Q 004683 677 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 708 (737)
Q Consensus 677 ~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd 708 (737)
....++.++++.+ ++.++++.+..+.+.+|.
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 1123466999999 788888877665554443
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=3.3e-09 Score=122.94 Aligned_cols=237 Identities=15% Similarity=0.140 Sum_probs=151.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C----CeEEEEECCCCcEEEE-ecCCCCCeEEEEEcCCC-eEEEEECCC-------
Q 004683 451 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDS------- 513 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s--d----g~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~-~l~sgs~dg------- 513 (737)
+|...+..++|| |+++|.+. . .+|++||+.+|+.+.. +... ....++|+ |+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence 456678889999 88887543 2 4799999999986553 2111 12467899 99 888887774
Q ss_pred ------eEEEEecCCCcE--EEEEc--C-CCcceEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeeceeeeeccc
Q 004683 514 ------SILVHCPCTKKT--KAKLK--G-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQT 578 (737)
Q Consensus 514 ------~I~vwd~~~~~~--~~~l~--~-~~~~v~~l~~sp~g~~l~s~s~----dg~I~lwdl~~~~~~~~~~~~~~~~ 578 (737)
.|++|++.++.. ...+. . |...+.++.|+|||++++.... ++.|+++|+.++.. ....+..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~~l~~ 278 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLLTVQG 278 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCEEEEC
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceEEEeC
Confidence 499999987642 33333 2 4445788999999998765443 24899999977421 1121222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEE-E-e---cCcEEEEeCCCCce--eEEecCCCCCCCeEEEEEccCCCEEEEEecC-C-
Q 004683 579 GLVPETTIVNHIQFHPDQIHLLS-I-H---EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G- 649 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~~-~-~---dg~I~iwd~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-g- 649 (737)
. . ...... ++++|..|+. + . .+.|..+|+.++.. ...+.++ ...+. .|++++++|+....+ +
T Consensus 279 ~-~---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 279 D-L---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp S-S---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTE
T ss_pred C-C---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCe
Confidence 2 1 233344 6777776665 4 2 36799999987654 3445442 33344 889999888766554 3
Q ss_pred -eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC----CcEEEEecCCCce
Q 004683 650 -HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 714 (737)
Q Consensus 650 -~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~V~iWd~~~~~~ 714 (737)
.|++|++.++. ...+... ....+..+.++| ++..++....+ ++|..||+.+++.
T Consensus 350 ~~l~~~d~~g~~-~~~l~~p---------~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 350 ARVEQFDYEGKR-VREVALP---------GLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEECTTSCE-EEEECCS---------SSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred eEEEEEECCCCe-eEEeecC---------CCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 68999988654 3343321 112234677788 55544443333 7899999987753
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=2.7e-08 Score=102.68 Aligned_cols=224 Identities=11% Similarity=-0.034 Sum_probs=146.2
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE
Q 004683 452 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 452 h~~~V~~v~~s--~~-~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
.........|+ |+ ++++.. ++.|..|+. +++ ...+..+...+..++++++| .+++...++.|..|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44567788998 77 455555 789999998 454 34555566678999999999 66555556899999986 5543
Q ss_pred EEEcCC----CcceEEEEEeCCCCEEEE----EeC-------------CCcEEEEeCCCCceeeceeeeecccCCCCCCC
Q 004683 527 AKLKGH----QNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 585 (737)
Q Consensus 527 ~~l~~~----~~~v~~l~~sp~g~~l~s----~s~-------------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 585 (737)
...... ...++.++++|+|++.++ |.. .+.|..||..+++... +. .. .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~~----~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-DL----D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-EE----S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-cC----C
Confidence 222111 134678999999998886 332 2467778876543211 11 11 4
Q ss_pred CeEEEEEecCCCEEEEE-ec------CcEEEEeCCCCcee--EEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEc
Q 004683 586 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~-~d------g~I~iwd~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~ 656 (737)
....++|+|+++.|+++ .. +.|++|++..+... ..+... .......++++++|++.++ +.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 56789999999987764 33 68999998754311 112111 1344567899999995444 444 4999998
Q ss_pred CCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEE
Q 004683 657 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 705 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~ 705 (737)
.++.+..+... . . +.+++|+| +++.|..++.++..+
T Consensus 266 -~g~~~~~~~~~--------~-~--~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-T--ASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECS--------S-C--CCEEEECT-TSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECC--------C-c--eeEEEEeC-CCCEEEEEcCCeEEE
Confidence 56666666532 2 2 34889998 777777777764333
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=5.2e-09 Score=109.03 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=182.7
Q ss_pred EEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeee
Q 004683 353 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 432 (737)
Q Consensus 353 ~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~ 432 (737)
.+..++.++.+..|| .. +..... ... +...+.++...++|. +..++.+ +..+|.. + ..
T Consensus 32 ~l~v~t~~~~l~~~d-~~----g~~~~~-~~~--~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~-g-----~~----- 89 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TD----GSVKWF-FKS--GEIIECRPSIGKDGT-IYFGSDK--VYAINPD-G-----TE----- 89 (330)
T ss_dssp CEECSSTTTTTEEEC-TT----SCEEES-SCG--GGEEEECCEETTTTE-ECCSSCE--EEEECCC-G-----GG-----
T ss_pred eEEEEcCCCEEEEEC-CC----CcEEEE-Eec--CCCcccceEEecCCc-EEEecCc--EEEECCC-C-----cE-----
Confidence 456666778888888 43 332211 211 234456777777776 4444444 6666632 1 11
Q ss_pred eEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEEC
Q 004683 433 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD 511 (737)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~ 511 (737)
+|.... ...........+..+..++ ++.+..+|.. ++.......+...+.++...+++.+..++.
T Consensus 90 --~~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~ 155 (330)
T 3hxj_A 90 --KWRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN 155 (330)
T ss_dssp --GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred --EEEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence 122111 1111122233366677777 8999999998 887777765555666777777776777888
Q ss_pred CCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEE
Q 004683 512 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 591 (737)
Q Consensus 512 dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 591 (737)
++.|..+|.. ++....+......+.++...+++...+ ++ +.|..+| .+++.... ..... ..+.++.
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~-----~~~~~----~~~~~~~ 221 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN-----FYAGY----WTVTRPA 221 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE-----ECCSS----CCCSCCE
T ss_pred CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE-----EccCC----cceeceE
Confidence 8999999998 887777665556677788888887554 44 8899999 55432211 11111 4577888
Q ss_pred EecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc
Q 004683 592 FHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 671 (737)
Q Consensus 592 ~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 671 (737)
..++|...+++.++.|..+|. +++.+..+... ...+.++.+.+++ .|..++.+|.|+.+|. +++....+...
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--- 293 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--- 293 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS---
T ss_pred ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC---
Confidence 899988777777888999985 56666555432 2333445555555 5667788889999996 67777665432
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
...+. ++...+ ++. |..++.+|.+++......+
T Consensus 294 -----~~~~~--~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 -----SWIIA--TPVIDE-NGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp -----SCCCS--CCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred -----Ccccc--ceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence 22233 556656 554 5668899999998776543
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=6e-08 Score=102.61 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=145.0
Q ss_pred CCEEEEEe--CCeEEEEECCCC----cEEEEec-------CCCCCeEEEEEcCCC-eEEEEECC------CeEEEEecCC
Q 004683 463 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT 522 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~s~~~-~l~sgs~d------g~I~vwd~~~ 522 (737)
+++|+..+ ++.|.++|+.+. +..++++ .....-..+.++|+| ++ ++..+ +.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V-s~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI-SALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE-EEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEE-EcCCCcCCCCCCeEEEEECCC
Confidence 66777766 799999999765 6666663 111234567889999 55 33333 7899999999
Q ss_pred CcEEEEEcCCC---cceEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeceeeeecccCC
Q 004683 523 KKTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGL 580 (737)
Q Consensus 523 ~~~~~~l~~~~---~~v~~l~~sp~g~~l~s~s-------------------~dg~I~lwdl~~~~~~~~~~~~~~~~~~ 580 (737)
++.+..+.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++. ++++..+.
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-----~~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-----IHSLTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-----EEEEESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-----eeEEecCC
Confidence 99999886322 2234688899999888875 368999999998532 33333321
Q ss_pred CCCCCCeEEEEE--ecCCCEEEE-Ee------cCcEEEEeCCCCce--eEEe--cCC---C-----------CCCCeEEE
Q 004683 581 VPETTIVNHIQF--HPDQIHLLS-IH------EGQIDVYEAPTLNH--TSQL--VPD---K-----------MDLPITYA 633 (737)
Q Consensus 581 ~~~~~~v~~l~~--sp~g~~l~~-~~------dg~I~iwd~~~~~~--~~~~--~~~---~-----------h~~~v~~~ 633 (737)
.. .....+.| +|+++++.+ +. +++|.+|....+.. .+.+ ... . .......+
T Consensus 249 ~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 10 23455656 999998887 33 45787766554421 1111 100 0 02457789
Q ss_pred EEccCCCEEEEEec-CCeEEEEEcCC---CeeEEEEeccccc-----CCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 634 TYSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 634 ~~sp~~~~l~sgs~-dg~I~vwd~~~---~~~~~~~~~~~~~-----~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
.+||||++|+++.. .+.|.+||+.. .+++..+...... +.|. .....+..++++| ||++|.++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 99999999998776 58999999863 3455544321000 0000 0001245799999 888888887
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=7.5e-12 Score=133.37 Aligned_cols=224 Identities=15% Similarity=0.061 Sum_probs=130.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCc-ceE-E
Q 004683 463 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 538 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~-~v~-~ 538 (737)
++.+++++ ||.|+.||..+|+.+..+.. +.+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 67788888 89999999999999988876 345455556677 777888999999999999987766654321 111 1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCce
Q 004683 539 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 617 (737)
Q Consensus 539 l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~ 617 (737)
..+. ++..+++++.|+.|+.||..+++.... +..+ . ...++|++..+++ +.++.|+.||.++|+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-----~~~~-----~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-----LSSA-----F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-----ecCC-----C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 345678888899999999998654322 1111 1 2344567777776 5889999999999987
Q ss_pred eEEecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 618 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
+..+.... ....+++++. ..+++++.||.|+.||..+|+.++.... ...+. ....+++ ++..
T Consensus 153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---------~~pv~-~~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---------ASPVV-AFYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---------SSCEE-EEEECTT-SSCE
T ss_pred EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---------CCceE-EEEEecC-CceE
Confidence 66553211 1222333332 5677888999999999999999888753 12222 1344555 5543
Q ss_pred E----EEEECCCcEEEEecCCCc----eeeeec
Q 004683 695 I----ALGLTNGRVHVIEPLESE----VEWGKL 719 (737)
Q Consensus 695 l----as~s~Dg~V~iWd~~~~~----~~w~~~ 719 (737)
. +.+ ++.++.+|..+++ ..|...
T Consensus 218 ~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 218 KVMHINVA--VETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp EECCEEEE--HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eccceeec--ccceeeeehhcCCcccceeeeec
Confidence 2 122 4567788887777 777664
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=8.5e-09 Score=108.61 Aligned_cols=228 Identities=9% Similarity=-0.088 Sum_probs=145.1
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEE----------CCCeEEEEecCCCcEEEEEcCC-------Cc
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 534 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs----------~dg~I~vwd~~~~~~~~~l~~~-------~~ 534 (737)
+|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999999744445 79999999 777665 3679999999999999888532 12
Q ss_pred ceEEEEEeCCCCEEEEEeC--CCcEEE--EeCCCCceeeceeee----ecccCCC-----CCCCCeEEEE----------
Q 004683 535 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLH----SFQTGLV-----PETTIVNHIQ---------- 591 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~--dg~I~l--wdl~~~~~~~~~~~~----~~~~~~~-----~~~~~v~~l~---------- 591 (737)
....++++|||++++++.. +..|.+ +|+.+ ....++. ..+.+.. ...+.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 3568999999999998875 456888 88865 1111100 0000000 0000000000
Q ss_pred ----------------EecCCCEEE-EEecCcEEEEeCCCCc--eeEEecCCC-----C---CCCeEEEEEccCCCEEEE
Q 004683 592 ----------------FHPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYV 644 (737)
Q Consensus 592 ----------------~sp~g~~l~-~~~dg~I~iwd~~~~~--~~~~~~~~~-----h---~~~v~~~~~sp~~~~l~s 644 (737)
.++++..++ ++. +.|.+.|..+.. .+..+.... + ......++++||++.+++
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 033333322 344 677777775432 222221100 0 011112689999998887
Q ss_pred Eec---------CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEE-CCCcEEEEecCCCc
Q 004683 645 SCK---------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE 713 (737)
Q Consensus 645 gs~---------dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~V~iWd~~~~~ 713 (737)
+.. ++.+.++|+.+++.+..+... . .+.+++|+| |++ ++++.. .++.|.++|+.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------~--~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------H--DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------E--EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECC---------C--CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 643 235669999999988887642 1 244899999 676 677777 69999999999987
Q ss_pred eeeee
Q 004683 714 VEWGK 718 (737)
Q Consensus 714 ~~w~~ 718 (737)
..-..
T Consensus 349 vv~~I 353 (368)
T 1mda_H 349 DQSSV 353 (368)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55433
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=5.6e-09 Score=109.99 Aligned_cols=266 Identities=8% Similarity=-0.025 Sum_probs=164.1
Q ss_pred EEEEecCC----eEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCcEEEeeccC
Q 004683 354 AVCAKSLE----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQS 419 (737)
Q Consensus 354 la~~s~dg----~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s----------~dg~i~iWd~~~ 419 (737)
.++...++ +|.++|..+ .+.... ++. -..+ .++|||||++++.+. .+++|.+||..+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t----~~v~~~-i~v--G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGC----GVTLGH-SLG--AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTT----TEEEEE-EEE--CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred EEECCccCCccceEEEEECCC----CeEEEE-EeC--CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 34444444 788999885 333332 222 1234 799999999998886 367788777664
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCC-----CCCeEEEEEe--CCEEEEEe---CCeEEE--EECCCCcEEEE
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLAT 487 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h-----~~~V~~v~~s--~~~l~s~s---dg~i~v--wd~~~~~~~~~ 487 (737)
. +.+......+. ......++++ |++++++. +..|.+ +|+.+ +..
T Consensus 106 ~---------------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 106 F---------------------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp C---------------------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred C---------------------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 3 22222211000 1223467888 88888776 357888 99876 445
Q ss_pred ecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-----CcEEEE----EcCCCcceEEEEEeCCCCEEEEEeCCCc
Q 004683 488 FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-----KKTKAK----LKGHQNRITCLAYSLSLNVLVSSGADAQ 556 (737)
Q Consensus 488 ~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~-----~~~~~~----l~~~~~~v~~l~~sp~g~~l~s~s~dg~ 556 (737)
+.... |..+.|++ .+++.+.|+.+.+.|+.+ ++.... +.....+. . .+++..++..+. +.
T Consensus 162 i~v~~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~ 232 (368)
T 1mda_H 162 TKSAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS 232 (368)
T ss_dssp EECSS----CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC
T ss_pred EECCC----ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE
Confidence 53211 12234555 556667788888888876 332210 11112333 3 666777776677 99
Q ss_pred EEEEeCCCCceeeceeeeecc------cCCCCCCCCeEEEEEecCCCEEEEE-e-c--------CcEEEEeCCCCceeEE
Q 004683 557 LCVWDAVGWKKLCSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQ 620 (737)
Q Consensus 557 I~lwdl~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~g~~l~~~-~-d--------g~I~iwd~~~~~~~~~ 620 (737)
|.+.|+.+........+. +. .+..+ .....++++|+++.++++ . . +.+.++|+.+++.+.+
T Consensus 233 V~viD~~~~~~~v~~~~~-~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAID-GNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp CEEEECCSSCCEEECCCC-SSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred EEEEECCCCcceEEEEEE-ecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 999998753211111111 00 01000 122237899999888864 3 2 3677999999999888
Q ss_pred ecCCCCCCCeEEEEEccCCCE-EEEEe-cCCeEEEEEcCCCeeEEEEec
Q 004683 621 LVPDKMDLPITYATYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~-l~sgs-~dg~I~vwd~~~~~~~~~~~~ 667 (737)
+.. .....+++|+|||+. +++.. .++.|.++|+.+++.+..+..
T Consensus 310 i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 310 ISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp CEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEC---CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 865 335889999999984 55555 589999999999999988863
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=122.80 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=108.4
Q ss_pred CC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccC-C
Q 004683 503 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-L 580 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~-~ 580 (737)
++ .+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++........ .... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Cccccc
Confidence 45 899999999999999999999988875 45555556667878888889999999999876543221111 0000 0
Q ss_pred CCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 581 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
. .++ +..+ ..+++ +.++.|+.||..+|+.+..+..+ . ...++|++..+++++.|+.|+.||..+|
T Consensus 85 ~---sp~----~~~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 85 A---SPC----RSSD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp T---CSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred c---Cce----EecC-CEEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 0 111 1123 34554 68899999999999988776542 1 2345678899999999999999999999
Q ss_pred eeEEEEecccccCCCCccCceeeEEEEEccCCC---CEEEEEECCCcEEEEecCCCceeeeec
Q 004683 660 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 660 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
+.++.+....+ . ..++.+ +. ..+++++.||.|+.||..+++..|...
T Consensus 151 ~~~W~~~~~~~----------~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 151 ELRWNATYFDY----------A--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SCCCEEEEEEE----------C--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CEEEeEecccc----------c--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 98877653211 1 122222 21 456778899999999999999999864
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=4e-07 Score=96.39 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=146.2
Q ss_pred e--cCCCEEEEEEC-CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-C
Q 004683 397 S--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-G 471 (737)
Q Consensus 397 s--pdg~~L~s~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-d 471 (737)
+ +++++|+..+. +++|.|.|+.+... .-+.. ++.++ .++.. . .....-..+..+ +..++++. +
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~-----k~ie~--~~~~~--~--~g~s~Ph~~~~~pdGi~Vs~~g~ 157 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPR-EPKII-----KVIEP--EEVKK--V--SGYSRLHTVHCGPDAIYISALGN 157 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTT-SCEEE-----EEECH--HHHHH--H--HCEEEEEEEEECSSCEEEEEEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCC-Cceee-----eeech--hhccc--c--cCCCcccceeECCCeEEEEcCCC
Confidence 7 88888877665 78999999864321 00000 00100 00000 0 001122344455 33555544 4
Q ss_pred ------CeEEEEECCCCcEEEEecCC--C-CCeEEEEEcCCC-eEEEEE-------------------CCCeEEEEecCC
Q 004683 472 ------GKISIFSLETFQTLATFANP--P-PIATYFILLPQD-LFAFGF-------------------DDSSILVHCPCT 522 (737)
Q Consensus 472 ------g~i~vwd~~~~~~~~~~~~~--~-~~v~~~~~s~~~-~l~sgs-------------------~dg~I~vwd~~~ 522 (737)
|.|.+.|..+++.+.++... . .--..+.|+|++ .+++.. .+.+|.+||+.+
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 68999999999999998722 2 122357889999 777764 368999999999
Q ss_pred CcEEEEEcCC-C-cceEEEEE--eCCCCEEEEEe------CCCcEEEEeCCCCceeeceeeeecccC----C--------
Q 004683 523 KKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTG----L-------- 580 (737)
Q Consensus 523 ~~~~~~l~~~-~-~~v~~l~~--sp~g~~l~s~s------~dg~I~lwdl~~~~~~~~~~~~~~~~~----~-------- 580 (737)
++.+.++... . .....+.| +|+++++.+++ .+++|.+|....+.......+. +... .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSCCGGGGGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCcccccccccccccc
Confidence 9888877642 1 23455656 99999987777 4568887766554322222211 1110 0
Q ss_pred CCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCC---CceeEEecCCCC------------CCCeEEEEEccCCCEEE
Q 004683 581 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT---LNHTSQLVPDKM------------DLPITYATYSCDGKCIY 643 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~---~~~~~~~~~~~h------------~~~v~~~~~sp~~~~l~ 643 (737)
......+..+.+||||++|.++ ..+.|.+||+.. .+.+..+...+. .+....++++|||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 0000357789999999999986 568999999852 345555543211 11357899999999999
Q ss_pred EEe
Q 004683 644 VSC 646 (737)
Q Consensus 644 sgs 646 (737)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=2.3e-07 Score=106.48 Aligned_cols=292 Identities=12% Similarity=0.066 Sum_probs=180.0
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCe-EEEEEeCCEEEEEe-CCeEEEE
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 477 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V-~~v~~s~~~l~s~s-dg~i~vw 477 (737)
+..++.++.++.|.-+|..+++. +|..+.......... .....+ ..+++.+..++.++ |+.|..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~~~dg~l~al 132 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKART-SCCDAVNRGVALWGDKVYVGTLDGRLIAL 132 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGGG-CTTCSCCCCCEEEBTEEEEECTTSEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCcccccc-ccccCCccceEEECCEEEEEcCCCEEEEE
Confidence 44577777888888888876544 566543221100000 000011 12344566677777 9999999
Q ss_pred ECCCCcEEEEecCCC----CCeEE-EEEcCCCeEEEEEC------CCeEEEEecCCCcEEEEEcCCC-------------
Q 004683 478 SLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ------------- 533 (737)
Q Consensus 478 d~~~~~~~~~~~~~~----~~v~~-~~~s~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~------------- 533 (737)
|..+|+.+..+.... ..+.+ ..+ .++.++++.. +|.|..+|..+|+.+..+....
T Consensus 133 D~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp ETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred ECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 999999998876421 11111 111 1445555543 5899999999999987774210
Q ss_pred ------------------cceEEEEEeCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeceeeeec
Q 004683 534 ------------------NRITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF 576 (737)
Q Consensus 534 ------------------~~v~~l~~sp~g~~l~s~s~dg-------------------~I~lwdl~~~~~~~~~~~~~~ 576 (737)
.....++++|++..++.++.++ .|..+|.++++........
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-- 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-- 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred cccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC--
Confidence 0112468888888888888776 3999999997655433221
Q ss_pred ccCCCC----CCCCeEEEEEecCCC---EEEE-EecCcEEEEeCCCCceeEEecCCCC----------CC----------
Q 004683 577 QTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------DL---------- 628 (737)
Q Consensus 577 ~~~~~~----~~~~v~~l~~sp~g~---~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h----------~~---------- 628 (737)
.|.. ...++....+..+|+ .+++ +.+|.++++|..+|+.+........ ..
T Consensus 290 --~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 290 --PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp --TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred --CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 1110 002233333344665 4555 5889999999999998744322110 00
Q ss_pred --------------CeEEEEEccCCCEEEEEe------------------------------------cCCeEEEEEcCC
Q 004683 629 --------------PITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTST 658 (737)
Q Consensus 629 --------------~v~~~~~sp~~~~l~sgs------------------------------------~dg~I~vwd~~~ 658 (737)
.-..++++|+...+++.. .+|.|+.||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 011267888777666421 238899999999
Q ss_pred CeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 659 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 659 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
|+.+.+..... ... ...... .+.++++++.||.|+.||..+++..|....+
T Consensus 448 G~~~W~~~~~~---------~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 448 QKAAWKVPYPT---------HWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEEEEEESS---------SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcEEEEccCCC---------CCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99998876421 111 122223 4678888999999999999999999988654
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.98 E-value=3.9e-08 Score=107.69 Aligned_cols=238 Identities=10% Similarity=0.048 Sum_probs=161.6
Q ss_pred EEEEEe-----CCEEEEEe--CCeEEEEECCCCcEEEEecC-CCCCeEEEEE-c-CCC-eEEEEE---------------
Q 004683 457 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFIL-L-PQD-LFAFGF--------------- 510 (737)
Q Consensus 457 ~~v~~s-----~~~l~s~s--dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~-s-~~~-~l~sgs--------------- 510 (737)
..+++. |++++.+. ++.|.+.|+.+.++.+.+.- .......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 455563 67777766 57899999999998886652 2345778887 5 899 877774
Q ss_pred ---CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC--------------------------------
Q 004683 511 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 555 (737)
Q Consensus 511 ---~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg-------------------------------- 555 (737)
.++.+.++|..+.+.+.++.--. ....++++|+|+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 24579999999998887776322 456788999999999888553
Q ss_pred ------cEEEEeCCCCceeecee-eeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCc----------
Q 004683 556 ------QLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---------- 616 (737)
Q Consensus 556 ------~I~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~---------- 616 (737)
.|.+.|.++.+ ... +..++.+ ....++.++|||++++++ .+.+|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~---~~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEA---SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp CSEEETTEEEEECSGGG---CCSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CeeEECcEEEEeCcccC---CceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35666666511 011 2223333 356689999999999985 67899999998653
Q ss_pred --eeEEecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEEcCC----------CeeEEEEecccccCCCCccCceeeE
Q 004683 617 --HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 617 --~~~~~~~~~h~~~v~~~~~sp~~~~l~-sgs~dg~I~vwd~~~----------~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
.+..... ......++|+|+| +++ +..-|++|.+||+.+ .+.+.++..+ + ..||. ....
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-y-qpGh~---~~~~ 391 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-Y-QPGHL---KTVM 391 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-S-CEEEE---EETT
T ss_pred cceEEEcCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-c-ccccc---eecc
Confidence 3333332 5668899999999 555 556689999999987 5566666543 1 11210 1111
Q ss_pred EEEEccCCCCEEEEEEC---CCc----------EEEEecCCCc
Q 004683 684 VIAAHPLEPNRIALGLT---NGR----------VHVIEPLESE 713 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~---Dg~----------V~iWd~~~~~ 713 (737)
+...+| ||++|+++.. |.. -.++|+..++
T Consensus 392 g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 392 GETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 345678 8999888753 332 1788986554
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=2.2e-07 Score=106.72 Aligned_cols=291 Identities=14% Similarity=0.099 Sum_probs=177.1
Q ss_pred CCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCC-----CC-CCe-EEEEEecCCCEEEEEECCCcEEEeeccCCcc
Q 004683 350 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 422 (737)
Q Consensus 350 dg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~-----h~-~~V-~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~ 422 (737)
.+..+++++.++.|.-+|..++ ...-.+...... +. ..+ ..+++ ++..++.++.|+.|..+|..+++.
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASG---KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEECCCCeEEEEECCCC---hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 4556677777888887777642 222122111100 00 001 11222 355688888899999998876544
Q ss_pred cccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-------CCeEEEEECCCCcEEEEecCC--C
Q 004683 423 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANP--P 492 (737)
Q Consensus 423 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-------dg~i~vwd~~~~~~~~~~~~~--~ 492 (737)
+|....+... ....+. .....+..++.+. +|.|+.+|..+|+.+..+... .
T Consensus 140 ------------~W~~~~~~~~-------~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 200 (668)
T 1kv9_A 140 ------------IWSQQTTDPA-------KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD 200 (668)
T ss_dssp ------------EEEEECSCTT-------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred ------------eeeeccCCCC-------CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC
Confidence 4654332100 000111 1112344555543 389999999999999887521 1
Q ss_pred -C----------------------------CeEEEEEcCCC-eEEEEECCC-------------------eEEEEecCCC
Q 004683 493 -P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTK 523 (737)
Q Consensus 493 -~----------------------------~v~~~~~s~~~-~l~sgs~dg-------------------~I~vwd~~~~ 523 (737)
. ....+++.|++ .++.++.++ .|..+|..+|
T Consensus 201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 0 11246788877 888887766 3999999999
Q ss_pred cEEEEEcC--CC-------cceEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCceeeceeeee------cc--cCC---
Q 004683 524 KTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS------FQ--TGL--- 580 (737)
Q Consensus 524 ~~~~~l~~--~~-------~~v~~l~~sp~g~---~l~s~s~dg~I~lwdl~~~~~~~~~~~~~------~~--~~~--- 580 (737)
+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+++.+....... +. .+.
T Consensus 281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 281 KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 99877764 22 2333333444675 68889999999999999987653221110 00 000
Q ss_pred ------C-------C---CCCCeEEEEEecCCCEEEEE-------------------------------------ecCcE
Q 004683 581 ------V-------P---ETTIVNHIQFHPDQIHLLSI-------------------------------------HEGQI 607 (737)
Q Consensus 581 ------~-------~---~~~~v~~l~~sp~g~~l~~~-------------------------------------~dg~I 607 (737)
. + +...-..++++|+...+++. .+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 0 0 00011236788877666541 13779
Q ss_pred EEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 608 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 608 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
..||+.+++.+-+... ........+...+.++++|+.||.+++||..+|+.+..+..
T Consensus 441 ~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 9999999998776643 22334445556788999999999999999999999998864
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=2.4e-06 Score=86.01 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=129.3
Q ss_pred CeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEE
Q 004683 455 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAK 528 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~ 528 (737)
.+..++|+ ++.|+.+. ++.|.+++...+.....+.........+++++++ .++ +....+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46688888 56666665 6899999997655443343333567899999976 444 445567999999875433222
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 603 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~---dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~ 603 (737)
..........++++|++..+..+.. .+.|..+++..... ..+ ..... .....++++|++..|+++ .
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~---~~~~~---~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RIL---AQDNL---GLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEE---ECTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEE---EECCC---CCCcEEEEcCCCCEEEEEECC
Confidence 3222246789999997666655554 36888888865211 111 11111 457899999988777764 5
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEe
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~ 666 (737)
.+.|.++|............ .....+++.. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 67999999975443333322 2345667654 45555444 56899999999999888875
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=1.4e-06 Score=97.76 Aligned_cols=293 Identities=11% Similarity=0.050 Sum_probs=175.3
Q ss_pred CCEEEEEEC-CCcEEEeec-cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCeEEE
Q 004683 400 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 476 (737)
Q Consensus 400 g~~L~s~s~-dg~i~iWd~-~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~i~v 476 (737)
+..++.++. ++.|.-+|. .+++. +|..............+....-..+++.+..++.++ |+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence 445666666 788888887 65443 465433211000000000000012344566777777 899999
Q ss_pred EECCCCcEEEEecCCC----CCeE-EEEEcCCCeEEEEEC------CCeEEEEecCCCcEEEEEcCCCcc----------
Q 004683 477 FSLETFQTLATFANPP----PIAT-YFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR---------- 535 (737)
Q Consensus 477 wd~~~~~~~~~~~~~~----~~v~-~~~~s~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~~~~~---------- 535 (737)
+|..+|+.+....... ..+. +... .++.+++++. ++.|..+|..+|+.+..+......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 9999999988765322 0111 1111 1445555554 789999999999988776532110
Q ss_pred ----------------------------eEEEEEeCCCCEEEEEeCC----------------CcEEEEeCCCCceeece
Q 004683 536 ----------------------------ITCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 536 ----------------------------v~~l~~sp~g~~l~s~s~d----------------g~I~lwdl~~~~~~~~~ 571 (737)
...+++.++...++.++.+ +.|..+|.++++.....
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~ 288 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence 0235677776777766642 25999999997654432
Q ss_pred eeeecccCCCC----CCCCeEEEEEecCCC---EEEEE-ecCcEEEEeCCCCceeEEecCCCC-----------CCCe--
Q 004683 572 FLHSFQTGLVP----ETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI-- 630 (737)
Q Consensus 572 ~~~~~~~~~~~----~~~~v~~l~~sp~g~---~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h-----------~~~v-- 630 (737)
... .|.. ......-+...++|+ .++.+ .+|.++++|..+|+.+..+..... ..++
T Consensus 289 ~~~----~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~ 364 (571)
T 2ad6_A 289 QKT----PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRD 364 (571)
T ss_dssp ESS----TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEEC
T ss_pred cCC----CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecc
Confidence 221 1100 001112233335774 44444 789999999999998776543210 0111
Q ss_pred ------------------------EEEEEccCCCEEEEEe-------------------------------------cCC
Q 004683 631 ------------------------TYATYSCDGKCIYVSC-------------------------------------KSG 649 (737)
Q Consensus 631 ------------------------~~~~~sp~~~~l~sgs-------------------------------------~dg 649 (737)
..++++|+...+++.+ .+|
T Consensus 365 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g 444 (571)
T 2ad6_A 365 PEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMG 444 (571)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCE
T ss_pred cccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCC
Confidence 2467888877777654 347
Q ss_pred eEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 650 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 650 ~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
.|+.||..+++.+.++... .... +..... .+..+..++.||.|+.||..+++.+|.....
T Consensus 445 ~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 445 QIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 8999999999998887532 1111 111112 3567777899999999999999999988653
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.87 E-value=2.4e-08 Score=103.88 Aligned_cols=267 Identities=12% Similarity=0.083 Sum_probs=167.8
Q ss_pred EEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCC
Q 004683 394 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 472 (737)
Q Consensus 394 v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg 472 (737)
..+..+|. +..++.++.|..|| .++.. +|.... +...+.++... +..+..++++
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~ 79 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK 79 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc
Confidence 44445665 56666778887777 43322 333221 22234556665 6667777745
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s 552 (737)
+..+|. +++.+..+...........+. ++.+.+++.++.|..+|.. ++...........+.++...+++. +..++
T Consensus 80 -l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 80 -VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp -EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred -EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence 888886 665544433222222233333 4477888889999999988 777766665555567777777776 55677
Q ss_pred CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEE
Q 004683 553 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 632 (737)
Q Consensus 553 ~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~ 632 (737)
.++.|..+|.. ++...... .. . ..+.++...++|...+++ +.|..+| .+++....+.. ....+.+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~-----~~-~---~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~ 219 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFK-----TN-D---AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYA--GYWTVTR 219 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEE-----CS-S---CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECC--SSCCCSC
T ss_pred CCCEEEEECCC-CCEeEEEe-----cC-C---CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEcc--CCcceec
Confidence 88999999988 44322211 11 1 356677787888766555 8999999 67777666643 2456778
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
+...++|. |..++.++.|..++. +++....+... ..... .+...+ + ..|..++.+|.|..+|. ++
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~-~-g~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN-T-DTIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT-T-SCEEEECTTCEEEEECT-TS
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC-C-CeEEEecCCCCEEEECC-CC
Confidence 88888875 555667888888874 56666655432 11111 344444 3 45667788889999996 77
Q ss_pred ceeeeecC
Q 004683 713 EVEWGKLP 720 (737)
Q Consensus 713 ~~~w~~~~ 720 (737)
+..|....
T Consensus 285 ~~~~~~~~ 292 (330)
T 3hxj_A 285 TEKWNFET 292 (330)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEEc
Confidence 77787643
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=1.1e-06 Score=98.64 Aligned_cols=252 Identities=13% Similarity=0.157 Sum_probs=153.5
Q ss_pred EEEecCCCE----EEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEE
Q 004683 394 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS 468 (737)
Q Consensus 394 v~fspdg~~----L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s 468 (737)
++++|.+.. ++.++.|+.+..+|..+++. +|....+... ....+. .....+..+++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~-------~~~~~~ssP~v~~g~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIK-------VGSTLTIAPYVVKDKVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCC-------ccceeecCCEEECCEEEE
Confidence 556554444 78888899998888775543 4654322100 000111 11123444554
Q ss_pred Ee-------CCeEEEEECCCCcEEEEecCCCCC-------------------------------------e-EEEEEcCC
Q 004683 469 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ 503 (737)
Q Consensus 469 ~s-------dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~s~~ 503 (737)
++ +|.|+.+|..+|+.+..+...... + ..+++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 43 589999999999998877632211 0 13456666
Q ss_pred C-eEEEEECC----------------CeEEEEecCCCcEEEEEcCCCcc---------eEEEEEe-CCC---CEEEEEeC
Q 004683 504 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQNR---------ITCLAYS-LSL---NVLVSSGA 553 (737)
Q Consensus 504 ~-~l~sgs~d----------------g~I~vwd~~~~~~~~~l~~~~~~---------v~~l~~s-p~g---~~l~s~s~ 553 (737)
. .++.++.+ +.|..+|.++|+.+..++..... ..-+... .+| ..++.++.
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~ 331 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR 331 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC
Confidence 6 77777655 38999999999998777642211 1112222 567 46777889
Q ss_pred CCcEEEEeCCCCceeeceeeee-------c--ccCC-------------C-----C---CCCCeEEEEEecCCCEEEEE-
Q 004683 554 DAQLCVWDAVGWKKLCSKFLHS-------F--QTGL-------------V-----P---ETTIVNHIQFHPDQIHLLSI- 602 (737)
Q Consensus 554 dg~I~lwdl~~~~~~~~~~~~~-------~--~~~~-------------~-----~---~~~~v~~l~~sp~g~~l~~~- 602 (737)
+|.++++|.++++.+....+.. + ..+. . + +...-..++++|+...+++.
T Consensus 332 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 332 NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEec
Confidence 9999999999987654433210 0 0000 0 0 00011246677766555431
Q ss_pred ---------------------------------------ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEE
Q 004683 603 ---------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 603 ---------------------------------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 643 (737)
..|.|.-||+.+++.+-+... ..+..+-.+...+..++
T Consensus 412 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf 488 (599)
T 1w6s_A 412 NHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVF 488 (599)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEE
T ss_pred cccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEE
Confidence 236788999999988766642 11222222334677888
Q ss_pred EEecCCeEEEEEcCCCeeEEEEec
Q 004683 644 VSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 644 sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.++.||.++.||.++|+.+.++..
T Consensus 489 ~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 489 YGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCeEEEEECCCCCEEEEeeC
Confidence 899999999999999999998864
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=9.9e-07 Score=87.79 Aligned_cols=215 Identities=13% Similarity=-0.016 Sum_probs=141.2
Q ss_pred cEEEEecCCC--CCeEEEEEcCCC-eEEEEEC--CCeEEEEecCCCcEEEEEcCCC-cceEEEEEeCCCCEEE-EEeCCC
Q 004683 483 QTLATFANPP--PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLV-SSGADA 555 (737)
Q Consensus 483 ~~~~~~~~~~--~~v~~~~~s~~~-~l~sgs~--dg~I~vwd~~~~~~~~~l~~~~-~~v~~l~~sp~g~~l~-s~s~dg 555 (737)
+.+.++. |. .....++|++++ .+++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..+. +.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4455553 33 235789999988 4444443 5799999999999988875322 122345554 44554 444578
Q ss_pred cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCC---CCCeE
Q 004683 556 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM---DLPIT 631 (737)
Q Consensus 556 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h---~~~v~ 631 (737)
.+.++|..+.+. +.+++.+ .+ . ...++++|+.++++ .++.|.++|..+.+.+..+..... -..+.
T Consensus 87 ~v~viD~~t~~v-----~~~i~~g-~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 87 IGFIYDRRTLSN-----IKNFTHQ-MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEEETTTTEE-----EEEEECC-SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCCCcE-----EEEEECC-CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 999999998543 3333333 11 1 23366788777775 678999999999998888764321 12467
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc----CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEE
Q 004683 632 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 707 (737)
Q Consensus 632 ~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iW 707 (737)
.+.|. +|...+....++.|.+.|..+++.+..+...... ..++ ........++|+|....+++++...+.|.+-
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 6754444546789999999999999998753110 0011 1112345999999444577777788899998
Q ss_pred ecCCCc
Q 004683 708 EPLESE 713 (737)
Q Consensus 708 d~~~~~ 713 (737)
++....
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 887643
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=1.1e-06 Score=98.70 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=151.6
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-------C
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G 471 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-------d 471 (737)
+..++.++.|+.+..+|..+++. +|....+... ....+. +....+..++.++ +
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~-------~~~~~~~~P~v~~g~v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPK-------VGSTLTQAPFVAKDTVLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCC-------ccceeccCCEEECCEEEEEecCCccCCC
Confidence 55678888899999888875543 4553322100 000111 1112344444443 5
Q ss_pred CeEEEEECCCCcEEEEecCCCCC-------------------------------------e-EEEEEcCCC-eEEEEECC
Q 004683 472 GKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD 512 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~s~~~-~l~sgs~d 512 (737)
+.|+.+|..+|+.+..+...... + ..+++.++. .++.++.+
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 89999999999998877532110 0 135666766 66665532
Q ss_pred ----------------CeEEEEecCCCcEEEEEcCC--C--------cceEEEEEeCCCC---EEEEEeCCCcEEEEeCC
Q 004683 513 ----------------SSILVHCPCTKKTKAKLKGH--Q--------NRITCLAYSLSLN---VLVSSGADAQLCVWDAV 563 (737)
Q Consensus 513 ----------------g~I~vwd~~~~~~~~~l~~~--~--------~~v~~l~~sp~g~---~l~s~s~dg~I~lwdl~ 563 (737)
+.|..+|..+|+.+..++.. . .++ -+...++|+ .++.++.+|.++++|..
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 334 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence 36999999999988777532 1 122 122234674 57788899999999999
Q ss_pred CCceeeceeeee-c--------ccCC------------------CC---CCCCeEEEEEecCCCEEEEE-e---------
Q 004683 564 GWKKLCSKFLHS-F--------QTGL------------------VP---ETTIVNHIQFHPDQIHLLSI-H--------- 603 (737)
Q Consensus 564 ~~~~~~~~~~~~-~--------~~~~------------------~~---~~~~v~~l~~sp~g~~l~~~-~--------- 603 (737)
+++.+....+.. . ..+. .+ +...-..++++|+...+++. .
T Consensus 335 tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 414 (571)
T 2ad6_A 335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF 414 (571)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccc
Confidence 987654332210 0 0000 00 00001346788887777652 2
Q ss_pred ----------------------------cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 604 ----------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 604 ----------------------------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
+|.|..||..+++.+-++.. ...+.+..+...+..++.++.||.|+.||
T Consensus 415 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 36899999999998877653 22233333344567888899999999999
Q ss_pred cCCCeeEEEEec
Q 004683 656 TSTLELRCQINL 667 (737)
Q Consensus 656 ~~~~~~~~~~~~ 667 (737)
..+|+.+.++..
T Consensus 492 ~~tG~~lw~~~~ 503 (571)
T 2ad6_A 492 NKDGKELWNFKM 503 (571)
T ss_dssp TTTCCEEEEEEC
T ss_pred CCCCCEEEEEeC
Confidence 999999998864
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.83 E-value=2.1e-07 Score=97.74 Aligned_cols=213 Identities=12% Similarity=0.024 Sum_probs=128.9
Q ss_pred CCeEEEEEcCCC-eEEEEE--CCCeEEEEecCCCcEEEEEc-------CCCcceEEEEEeCCCCEEEEEeC-----CCcE
Q 004683 493 PIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGA-----DAQL 557 (737)
Q Consensus 493 ~~v~~~~~s~~~-~l~sgs--~dg~I~vwd~~~~~~~~~l~-------~~~~~v~~l~~sp~g~~l~s~s~-----dg~I 557 (737)
..+..++++++| .+++.. .++.+++|.+.+++. ..+. .+-..+..++++++|++.++... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 578899999999 777653 234244554445543 3221 24467899999999986665543 5789
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE-E-E---ecCcEEEEeCCCCceeEEecCCC-------
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-I---HEGQIDVYEAPTLNHTSQLVPDK------- 625 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~-~---~dg~I~iwd~~~~~~~~~~~~~~------- 625 (737)
.+||+.+++......+..-...+. ..+..++++|++..++ + . .++.|.+||..+++....+..+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~---~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSN---SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTT---CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEEECCCCeEEEEEECChhhcccc---cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 999999865332222110001111 3568999998755554 4 2 46789999998887665542210
Q ss_pred --------------------CCCCeEEEEEccCCCEEEEEecCC-eEEEEEcC---CCeeEEEEecccccCCCCccCcee
Q 004683 626 --------------------MDLPITYATYSCDGKCIYVSCKSG-HVKVFDTS---TLELRCQINLTAYAQPGTISLELY 681 (737)
Q Consensus 626 --------------------h~~~v~~~~~sp~~~~l~sgs~dg-~I~vwd~~---~~~~~~~~~~~~~~~~g~~~~~v~ 681 (737)
....+..++|+|+|+.|+.+..++ .++.++.. .+.....-....+...|+ .. .
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g--~ 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE-KP--I 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-CC--S
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc-CC--C
Confidence 012368899999999998887765 55555432 111000000000000011 11 1
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 682 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 682 ~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+..+++++ ++.++++...++.|.+|+..+++
T Consensus 250 pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 250 CDGISIDK-DHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CSCEEECT-TCCEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEECC-CCCEEEEccCCCeEEEEECCCCC
Confidence 23689999 78999999899999999995554
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=1.9e-05 Score=92.89 Aligned_cols=321 Identities=10% Similarity=0.078 Sum_probs=193.3
Q ss_pred CCCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCC-eEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 348 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 348 spdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~-V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
.++|...+ ++. +.+..|+... +.+..+.. +. .... |.++...++|...+ ++.++.+..|+..+..
T Consensus 139 d~~g~lwi-~t~-~gl~~~~~~~----~~~~~~~~-~~-~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~----- 204 (795)
T 4a2l_A 139 ISPEQLLI-STP-EGLIMFDIKE----SKFIDDSF-ST-AMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKT----- 204 (795)
T ss_dssp EETTEEEE-EET-TEEEEEETTT----TEEECSSS-CH-HHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCC-----
T ss_pred CCCCCEEE-EEC-CceEEEECCC----CEEEeccC-CC-CCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCe-----
Confidence 34555444 333 5578888653 33333211 10 0123 88999988887554 5655457777654321
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecC-------CCCCeEE
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN-------PPPIATY 497 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~-------~~~~v~~ 497 (737)
+..... ..+...|.++... ...+..|. ++-+.+||..+++....... ....|.+
T Consensus 205 ----------------~~~~~~-~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 267 (795)
T 4a2l_A 205 ----------------FEKVIP-ILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRS 267 (795)
T ss_dssp ----------------EEECC-----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEE
T ss_pred ----------------EEEecC-CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEE
Confidence 111100 0134568888877 55555555 55699999887654433222 1356899
Q ss_pred EEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcC-------CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 498 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 498 ~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~-------~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
+...++|.+..|+.+ -|.+||..++........ ....|.++...++|. +..|+.++.|..|+..+....
T Consensus 268 i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-- 343 (795)
T 4a2l_A 268 LAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-- 343 (795)
T ss_dssp EEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE--
T ss_pred EEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce--
Confidence 999888855556665 688999887764433211 235799999999886 556777788999987653211
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCC------CCCCCeEEEEEccCCCEEEE
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------KMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~l~s 644 (737)
...............|.++...++|...+.+.++.|..||..++......... -....|.+++..++|+.|..
T Consensus 344 -~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi 422 (795)
T 4a2l_A 344 -NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI 422 (795)
T ss_dssp -EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE
T ss_pred -EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE
Confidence 11100000000115799999999998777777778999998776543322110 12467899999889986677
Q ss_pred EecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 645 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 645 gs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
|+.++-|..||..+++... +.... .+-....++ ++...+ ++.+.+.. . +.+.+|+..+++
T Consensus 423 gt~~~Gl~~~d~~~~~~~~-~~~~~---~~l~~~~v~--~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVEN-FNQRN---SQLVNENVY--AILPDG-EGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp EETTTEEEEEETTTCCEEE-ECTTT---SCCSCSCEE--EEEECS-SSCEEEEE-S-SCEEEEETTTTE
T ss_pred EeCcCceeEEeCCCCcEEE-eecCC---CCcCCCeeE--EEEECC-CCCEEEEe-c-CceeEEeCCCCe
Confidence 7777789999999887443 22110 001122344 788777 56655544 4 458889987764
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.80 E-value=5e-05 Score=89.21 Aligned_cols=325 Identities=9% Similarity=0.010 Sum_probs=195.7
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecC----CCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~----~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
++|. +..++.++.+..|+... +.+..+... .......|.++...++|...+ |+.+ -|.+|+..+...
T Consensus 224 ~~g~-lwigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~-- 294 (795)
T 4a2l_A 224 SPTR-IWVATEGAGLFLINPKT----KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSF-- 294 (795)
T ss_dssp ETTE-EEEEEBSSCEEEEETTT----TEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEE--
T ss_pred CCCC-EEEEECCCCeEEEeCCC----CeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeE--
Confidence 3444 44455555588888763 444443221 011246799999999998544 4554 577776543211
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecC-------CCCCe
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN-------PPPIA 495 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~-------~~~~v 495 (737)
..+...... ...-....|.++... ...+..|+ ++-|..|+..++... .+.. ....|
T Consensus 295 ---------~~~~~~~~~-----~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V 359 (795)
T 4a2l_A 295 ---------ASYSSNPVE-----NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVV 359 (795)
T ss_dssp ---------EEECCCTTS-----TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSE
T ss_pred ---------EEEecCCCC-----CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCee
Confidence 011100000 000134679999888 44555666 688899987655432 2221 23468
Q ss_pred EEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcC--------CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 004683 496 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 496 ~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~--------~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
.++...++|.|..|+.++-|..||..+++....... ....|.++...++|+.+..|+.++.|..||..++..
T Consensus 360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 999988888677788888899999887765433211 235789999999998677788878899999887542
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC----CCCCCCeEEEEEccCCCEEE
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~l~ 643 (737)
....... ..... ..|.++...++|...+++. +.+.+||..+++....... .-....|.++...++|.+.+
T Consensus 440 ~~~~~~~--~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 440 ENFNQRN--SQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp EEECTTT--SCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred EEeecCC--CCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 2110000 00111 5799999999988777665 6799999877654322111 01246789999999888666
Q ss_pred EEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 644 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 644 sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.+. +-|..|+..+++. .+... ....+-... .+.++...+ ++.+.++. .. .|..|+..+++
T Consensus 514 gt~--~Gl~~~~~~~~~~--~~~~~-~~~~~l~~~--~i~~i~~d~-~g~lWigT-~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 514 GGE--EGLSVFKQEGLDI--QKASI-LPVSNVTKL--FTNCIYEAS-NGIIWVGT-RE-GFYCFNEKDKQ 573 (795)
T ss_dssp EES--SCEEEEEEETTEE--EECCC-SCSCGGGGS--CEEEEEECT-TSCEEEEE-SS-CEEEEETTTTE
T ss_pred EeC--CceEEEeCCCCeE--EEecC-CCCCCCCCC--eeEEEEECC-CCCEEEEe-CC-CceeECCCCCc
Confidence 554 4588999888765 33210 000111122 344888877 66655543 44 58888887654
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=9e-06 Score=81.74 Aligned_cols=231 Identities=15% Similarity=0.059 Sum_probs=143.0
Q ss_pred CEEEEEeCCeEEEEECCCCcE-----EEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCCCcce
Q 004683 464 SHLFSASGGKISIFSLETFQT-----LATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 464 ~~l~s~sdg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
.+|+.+..+.|+.+++..... ...+......+..++|++++ .|+ +...++.|..++..++.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 456666656888888875432 11122222356789999976 444 44557899999998765444443333567
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e--cCcEEEEe
Q 004683 537 TCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE 611 (737)
Q Consensus 537 ~~l~~sp~g~~l~s-~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~--dg~I~iwd 611 (737)
..++++|++..++. ....+.|.++++..... ..+ ...+. .....++++|++..|..+ . .+.|..++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~--~~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVL--FDTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEE--ECSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEE--EECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 89999997655554 44567899999875221 111 11111 357899999976665543 2 46898888
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccC
Q 004683 612 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 690 (737)
Q Consensus 612 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 690 (737)
+. +.....+... .......++++|++..|+.+. ..+.|.+++..+......+.. + . .+..++..
T Consensus 153 ~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~---~P~gi~~d-- 217 (267)
T 1npe_A 153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--Q---YPFAVTSY-- 217 (267)
T ss_dssp TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--C---SEEEEEEE--
T ss_pred cC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--C---CceEEEEe--
Confidence 85 3333333211 245688999999877666544 568999999986544333221 1 1 12355543
Q ss_pred CCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 691 EPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 691 d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
++.++++...++.|.+++..+++..-..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 3455555556789999999988755443
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.76 E-value=7e-07 Score=87.77 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=126.7
Q ss_pred EEEEecCCCCC--eEEEEEcCCC-eEEEEECCC--eEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEe-CCCcE
Q 004683 484 TLATFANPPPI--ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL 557 (737)
Q Consensus 484 ~~~~~~~~~~~--v~~~~~s~~~-~l~sgs~dg--~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s-~dg~I 557 (737)
.++++ .|+.. ...+.|+ ++ .+.+.+.+| .|+.+|+.+++.+..+... .........+++..+.... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 44555 34433 4788888 67 666666665 8999999999998887643 2333333333455555544 58899
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCC---CCeEEE
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 633 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~~ 633 (737)
.+||..+.+.... +..+. ....++++++.|+.+ .++.|.++|..+.+.+.++...... ..++.+
T Consensus 110 ~v~D~~t~~~~~t-----i~~~~-------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 110 FVWNIRNLRQVRS-----FNYDG-------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEETTTCCEEEE-----EECSS-------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEECccCcEEEE-----EECCC-------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 9999998554333 32221 112344677777775 5678999999999988887653222 334567
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCC--CccCceeeEEEEEccCCCCEEEEE
Q 004683 634 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 634 ~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
.|. +|+..+..-.++.|.+.|..+|+.+..+......+.. ..........++|+|....+++||
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 776 6765555546889999999999999999865332210 001112245999999434444444
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.76 E-value=4.6e-06 Score=93.67 Aligned_cols=291 Identities=12% Similarity=0.036 Sum_probs=172.2
Q ss_pred CCEEEEEEC-CCcEEEeec-cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE--eCCE----EEEEe-
Q 004683 400 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSH----LFSAS- 470 (737)
Q Consensus 400 g~~L~s~s~-dg~i~iWd~-~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~--s~~~----l~s~s- 470 (737)
+..++.++. ++.|.-+|. .+++. +|....+.................+++ .+.. ++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 445666776 788888887 65443 565443321100000000000112445 4333 66666
Q ss_pred CCeEEEEECCCCcEEEEecCCCC----CeE-EEEEcCCCeEEEEE------CCCeEEEEecCCCcEEEEEcCCCcc----
Q 004683 471 GGKISIFSLETFQTLATFANPPP----IAT-YFILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR---- 535 (737)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~----~v~-~~~~s~~~~l~sgs------~dg~I~vwd~~~~~~~~~l~~~~~~---- 535 (737)
|+.+..+|..+|+.+........ .+. ...+ .++.+++++ .++.|+.+|..+|+.+..+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 99999999999999887653220 111 1111 145555555 3799999999999988776532111
Q ss_pred ---------------------------------e-EEEEEeCCCCEEEEEeCCC----------------cEEEEeCCCC
Q 004683 536 ---------------------------------I-TCLAYSLSLNVLVSSGADA----------------QLCVWDAVGW 565 (737)
Q Consensus 536 ---------------------------------v-~~l~~sp~g~~l~s~s~dg----------------~I~lwdl~~~ 565 (737)
+ ..+++.++...++.++.++ .|..+|.+++
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 1356677777888777653 7999999997
Q ss_pred ceeeceeeeecccCCC-----CCCCCeEEEEEe-cCC---CEEEE-EecCcEEEEeCCCCceeEEecCCC----------
Q 004683 566 KKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------- 625 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~-----~~~~~v~~l~~s-p~g---~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~---------- 625 (737)
+........ .|. ....++ -+... .+| ..++. +.+|.++++|..+|+.+.......
T Consensus 289 ~~~W~~q~~----~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 289 EAKFGYQKT----PHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp CEEEEEESS----TTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ceeeEeecC----CCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 664432221 110 000112 12222 567 34554 488999999999999876654211
Q ss_pred -CCCC--------------------------eEEEEEccCCCEEEEEe--------------------------------
Q 004683 626 -MDLP--------------------------ITYATYSCDGKCIYVSC-------------------------------- 646 (737)
Q Consensus 626 -h~~~--------------------------v~~~~~sp~~~~l~sgs-------------------------------- 646 (737)
...+ -..++++|+..++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0011 12456777766665531
Q ss_pred -------cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeec
Q 004683 647 -------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 647 -------~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
.+|.|..||+.+|+.+.+..... ....-.++ . .+.++..++.||.++.||..+++.+|...
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCC---------CccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 34789999999999988875310 11100111 1 35677789999999999999999999885
Q ss_pred C
Q 004683 720 P 720 (737)
Q Consensus 720 ~ 720 (737)
.
T Consensus 512 l 512 (599)
T 1w6s_A 512 I 512 (599)
T ss_dssp C
T ss_pred C
Confidence 4
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=7.5e-06 Score=92.03 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=151.7
Q ss_pred EEeCCEEEEEe-CCeEEEEECCCCcEEEEecCCCC----CeE-EEEEcC---CC--eEEEEEC------CCeEEEEecCC
Q 004683 460 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IAT-YFILLP---QD--LFAFGFD------DSSILVHCPCT 522 (737)
Q Consensus 460 ~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~----~v~-~~~~s~---~~--~l~sgs~------dg~I~vwd~~~ 522 (737)
++.+..++.++ ++.|..+|..+|+.+........ .+. ...+.. ++ .+++++. ++.|.-+|..+
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34566677777 99999999999999887753321 111 111111 23 5666553 78999999999
Q ss_pred CcEEEEEcCCCcce-----------------------------------------EEEEEeCCCCEEEEEeC--------
Q 004683 523 KKTKAKLKGHQNRI-----------------------------------------TCLAYSLSLNVLVSSGA-------- 553 (737)
Q Consensus 523 ~~~~~~l~~~~~~v-----------------------------------------~~l~~sp~g~~l~s~s~-------- 553 (737)
|+.+-........+ ..++++|+...++.++.
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 99876553211000 13566777777777663
Q ss_pred ------------C----CcEEEEeCCCCceeeceeeeecccCCC-----CCCCCeEEEEEe-cCCC---EEEE-EecCcE
Q 004683 554 ------------D----AQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLS-IHEGQI 607 (737)
Q Consensus 554 ------------d----g~I~lwdl~~~~~~~~~~~~~~~~~~~-----~~~~~v~~l~~s-p~g~---~l~~-~~dg~I 607 (737)
| +.|..+|..+++........ .|. ....++. +... .+|+ .++. +.+|.+
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l 348 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT----PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFF 348 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS----TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC----CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceE
Confidence 2 57999999997765432221 110 0001221 2222 4674 4555 488999
Q ss_pred EEEeCCCCceeEEecCCCCC-----------CC--------------------------------eEEEEEccCCCEEEE
Q 004683 608 DVYEAPTLNHTSQLVPDKMD-----------LP--------------------------------ITYATYSCDGKCIYV 644 (737)
Q Consensus 608 ~iwd~~~~~~~~~~~~~~h~-----------~~--------------------------------v~~~~~sp~~~~l~s 644 (737)
+++|..+|+.+..+...... .+ -..++++|+...+++
T Consensus 349 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv 428 (582)
T 1flg_A 349 YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYV 428 (582)
T ss_dssp EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEE
T ss_pred EEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEE
Confidence 99999999987665432100 00 013466776555554
Q ss_pred Ee---------------------------------cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 645 SC---------------------------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 645 gs---------------------------------~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
.. .+|.|+.||+.+|+.+.+..... ..+...++. .
T Consensus 429 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~t---a 496 (582)
T 1flg_A 429 PANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLAT---A 496 (582)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEEE---T
T ss_pred echhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceEe---C
Confidence 33 25889999999999988876421 111001121 3
Q ss_pred CCEEEEEECCCcEEEEecCCCceeeeecCC
Q 004683 692 PNRIALGLTNGRVHVIEPLESEVEWGKLPF 721 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~~~w~~~~~ 721 (737)
+.+++.|+.||.++.||..+++.+|....+
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 567888999999999999999999988653
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.74 E-value=6.4e-06 Score=92.60 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=148.2
Q ss_pred CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeC----C-EEEEEe----
Q 004683 400 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS---- 470 (737)
Q Consensus 400 g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~----~-~l~s~s---- 470 (737)
+..++.++.|+.+..+|..+++. +|....+...... .....++. ..+ + .+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~~--~~~~sP~v---~~~~~~G~~~v~vg~~~~e 179 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAGY--TMTGAPTI---VKDGKTGKVLLIHGSSGDE 179 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGTC--BCCSCCEE---EECTTTCCEEEEECCBCGG
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcCc--ccccCCEE---eCCCcCCcEEEEEeccccc
Confidence 45678888899998888876544 4553322100000 00111111 112 1 555543
Q ss_pred ---CCeEEEEECCCCcEEEEecCCCCCe-----------------------------------------EEEEEcCCC-e
Q 004683 471 ---GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD-L 505 (737)
Q Consensus 471 ---dg~i~vwd~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~s~~~-~ 505 (737)
+|.|+.+|..+|+.+.........+ ..+++.|+. .
T Consensus 180 ~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~ 259 (582)
T 1flg_A 180 FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT 259 (582)
T ss_dssp GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE
T ss_pred cCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCE
Confidence 5899999999999887654321000 134566766 6
Q ss_pred EEEEEC--------------------C----CeEEEEecCCCcEEEEEcC--CC--------cceEEEEEe-CCCC---E
Q 004683 506 FAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN---V 547 (737)
Q Consensus 506 l~sgs~--------------------d----g~I~vwd~~~~~~~~~l~~--~~--------~~v~~l~~s-p~g~---~ 547 (737)
++.+.. | +.|..+|..+|+.+..++. |. .++. +... .+|+ .
T Consensus 260 vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~ 338 (582)
T 1flg_A 260 IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKA 338 (582)
T ss_dssp EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence 666653 2 5899999999999877753 21 1111 1222 5674 6
Q ss_pred EEEEeCCCcEEEEeCCCCceeeceeeee-c--------ccC-------CC-----------------C---CCCCeEEEE
Q 004683 548 LVSSGADAQLCVWDAVGWKKLCSKFLHS-F--------QTG-------LV-----------------P---ETTIVNHIQ 591 (737)
Q Consensus 548 l~s~s~dg~I~lwdl~~~~~~~~~~~~~-~--------~~~-------~~-----------------~---~~~~v~~l~ 591 (737)
++.++.+|.++++|..+++.+....... . ..+ .. + +...-..++
T Consensus 339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 418 (582)
T 1flg_A 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA 418 (582)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence 8889999999999999987654332210 0 000 00 0 000012456
Q ss_pred EecCCCEEEE-E---------------------------------ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEcc
Q 004683 592 FHPDQIHLLS-I---------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 637 (737)
Q Consensus 592 ~sp~g~~l~~-~---------------------------------~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp 637 (737)
++|+...+++ . .+|.|.-||+.+++.+-+.... .++..-....
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~t 495 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLAT 495 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEE
T ss_pred ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEe
Confidence 6776555444 2 1478999999999987666432 2222222233
Q ss_pred CCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 638 DGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 638 ~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+..++.|+.||.++.||.++|+.+.++..
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 577888899999999999999999999875
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=7.1e-06 Score=81.60 Aligned_cols=201 Identities=12% Similarity=0.042 Sum_probs=131.0
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~--dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 466 (737)
.....++|+|||...++.+. ++.|.+.|.. +++.+.......+ .....+++.++.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~---------------------tg~v~~~i~l~~~-~fgeGi~~~g~~l 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQ---------------------TGKVENIHKMDDS-YFGEGLTLLNEKL 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETT---------------------TCCEEEEEECCTT-CCEEEEEEETTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECC---------------------CCCEEEEEecCCC-cceEEEEEeCCEE
Confidence 34689999999755444443 5678776655 3443333221112 2223566666666
Q ss_pred EEEe--CCeEEEEECCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCC-----cceE
Q 004683 467 FSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT 537 (737)
Q Consensus 467 ~s~s--dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~-----~~v~ 537 (737)
+.+. ++.+.++|..+++.+.++... ... ..+++|| .++++..++.|.++|..+.+.+..+.-.. ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 6666 799999999999999988633 222 3355678 66666678899999999988887775321 2367
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc----CCCCCCCCeEEEEEecCCCEEEE-E-ecCcEEEEe
Q 004683 538 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYE 611 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~~sp~g~~l~~-~-~dg~I~iwd 611 (737)
.+.|. +|...+....++.|.+.|..+++......+..+.. ...+.......++++|+++.+++ + ..+.+.+.+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 77555555567899999999976654433321100 00000135689999999987776 5 567888888
Q ss_pred CCCC
Q 004683 612 APTL 615 (737)
Q Consensus 612 ~~~~ 615 (737)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7543
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.66 E-value=2.3e-06 Score=84.01 Aligned_cols=198 Identities=11% Similarity=-0.013 Sum_probs=127.5
Q ss_pred cEEEEecCCCC--CeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEEEEcCCCcceE--EEEEeCCCCEEEEEeCCCcE
Q 004683 483 QTLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT--CLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 483 ~~~~~~~~~~~--~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~--~l~~sp~g~~l~s~s~dg~I 557 (737)
+.+.++ .|+. -...+.|+ ++ .+.+.+.+|.|+++|+.+++.+..+ - ..... .+++.. ++..+..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 344555 3332 34678887 35 7777778889999999999987776 2 22333 344442 2444445568899
Q ss_pred EEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCC---CCeEEE
Q 004683 558 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 633 (737)
Q Consensus 558 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~~ 633 (737)
.+||..+.+.... +... ..-..+ +++++.|+++ .++.|+++|..+.+.+.++....+. ..++.+
T Consensus 119 ~V~D~~Tl~~~~t-----i~~~-----~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 119 FTWSGMPPQRERT-----TRYS-----GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEETTTTEEEEE-----EECS-----SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEECCcCcEEEE-----EeCC-----CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 9999999554433 3322 111233 3568888876 5889999999999988887653222 245667
Q ss_pred EEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCC---CccCceeeEEEEEccCCCCEEEEE
Q 004683 634 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG---TISLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 634 ~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g---~~~~~v~~~~v~~sp~d~~~las~ 698 (737)
.|. +|+..+....++.|.+.|..+|+.+..+......+.. ..........++|+|..+.+++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 776 7765544446789999999999999999865321100 001112245999999555666666
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.65 E-value=1.9e-06 Score=94.37 Aligned_cols=184 Identities=15% Similarity=0.066 Sum_probs=128.0
Q ss_pred CC-eEEEEE-CCCeEEEEecCCCcEEEEEcC-CCcceEEEEE-e-CCCCEEEEEe------------------CCCcEEE
Q 004683 503 QD-LFAFGF-DDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSG------------------ADAQLCV 559 (737)
Q Consensus 503 ~~-~l~sgs-~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~-s-p~g~~l~s~s------------------~dg~I~l 559 (737)
|| ++++.. .++.|.+.|+.+.++...+.- ....+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 77 555554 456899999999998885532 2345788888 5 9999998885 2457899
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecC---------------------------------
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG--------------------------------- 605 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg--------------------------------- 605 (737)
+|..+.+. ..++.-+ +....++++|+|+++++ +.+.
T Consensus 180 ID~~t~~v-----~~qI~Vg-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 180 VDADKWEV-----AWQVLVS-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EETTTTEE-----EEEEEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EECCCCeE-----EEEEEeC-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 99998433 3333332 23456789999999887 4221
Q ss_pred -----cEEEEeCCC--Cce-eEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCe------------eEEE
Q 004683 606 -----QIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE------------LRCQ 664 (737)
Q Consensus 606 -----~I~iwd~~~--~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~------------~~~~ 664 (737)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 377777776 444 444432 34566899999999888765 57899999999653 1222
Q ss_pred EecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 665 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 665 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
+. .| ..+..++|+| +|...++.--|+.|.+|++.+
T Consensus 327 v~------vG-----~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PE------LG-----LGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CB------CC-----SCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred cC------CC-----CCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 21 12 2255899999 786666777899999999977
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=5.1e-06 Score=81.61 Aligned_cols=183 Identities=10% Similarity=0.074 Sum_probs=123.7
Q ss_pred CCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeE--EEEEcCCCeEEEEECCCeEEEEecCCCcEEEEE
Q 004683 454 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 454 ~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l 529 (737)
.-...+.|+ +.++.+.+ +|.|+++|+++++.++.+ -. .... .+++..+...++...++.+.+||..+.+.+.++
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 445788999 55555555 789999999999988887 22 2332 345543333344556889999999999999988
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEE
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 608 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~ 608 (737)
..... -..+ +++++.|+.+..++.|.++|..+.+......+..-.... ..++.+.|. +|+..+.. .++.|.
T Consensus 133 ~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v----~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV----ELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc----ccccccEEe-CCEEEEEECCCCeEE
Confidence 74322 2333 456888888877899999999986554443332111111 245667777 67655445 678999
Q ss_pred EEeCCCCceeEEecCC-----------CCCCCeEEEEEccCCCEEEEEe
Q 004683 609 VYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~l~sgs 646 (737)
+.|.++++.+..+... ......++++|+|+++.|++.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999998877532 1134678999999776555544
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=8.3e-06 Score=80.16 Aligned_cols=184 Identities=12% Similarity=0.035 Sum_probs=124.1
Q ss_pred eEEEEEe-CCEEEEEe-CC--eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEE
Q 004683 456 ISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKL 529 (737)
Q Consensus 456 V~~v~~s-~~~l~s~s-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l 529 (737)
...+.|+ +.++.+++ +| .|+++|+.+++.+..+..... .......+++ .|. +.-.++.+.+||..+.+.+.++
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 4788899 65556666 55 899999999999998864432 2222223344 443 3446889999999999999988
Q ss_pred cCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEE
Q 004683 530 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 608 (737)
Q Consensus 530 ~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~ 608 (737)
.... ....++++++.++.+..++.|.++|..+.+......+. ..+... ..++.+.|. +|+..+.. .++.|.
T Consensus 124 ~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 124 NYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp ECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred ECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence 7432 22334467777777766788999999986554433332 111110 234557776 67655445 678999
Q ss_pred EEeCCCCceeEEecCCC----------CCCCeEEEEEccCCCEEEEEecC
Q 004683 609 VYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
+.|.++++.+..+...+ .....+.++|+|+++.|++.+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99999999988875421 12456899999988877776643
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.60 E-value=2.2e-05 Score=76.51 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=126.1
Q ss_pred cEEEEecCCCC--CeEEEEEcCCC-eEEEEECC--CeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEE-EEEeCCCc
Q 004683 483 QTLATFANPPP--IATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQ 556 (737)
Q Consensus 483 ~~~~~~~~~~~--~v~~~~~s~~~-~l~sgs~d--g~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l-~s~s~dg~ 556 (737)
+.+..+ .|+. -...+.|++ + .+.+.+.+ ..|+.+|+.+++.+....... ........+.+..+ +..-.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCE
Confidence 344555 4443 466888886 6 55555554 489999999999988776432 22222223334444 44456889
Q ss_pred EEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCceeEEecCCCCC---CCeEE
Q 004683 557 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 632 (737)
Q Consensus 557 I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~~~~~~~~~h~---~~v~~ 632 (737)
+.+||..+.+... ++..+. .-..+ ++++..|+++ .++.|.++|..+.+.+.++....+. ..++.
T Consensus 87 v~v~D~~tl~~~~-----ti~~~~-----~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 87 GFVYDLATLTPRA-----RFRYPG-----EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEETTTTEEEE-----EEECSS-----CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCcCcEEE-----EEeCCC-----CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 9999999854433 333221 11233 4567767665 6788999999999988887653222 34556
Q ss_pred EEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCc---cCceeeEEEEEccCCCCEEEEE
Q 004683 633 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI---SLELYPLVIAAHPLEPNRIALG 698 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~v~~sp~d~~~las~ 698 (737)
+.|. +|+..+....+..|.+.|..+|+.+..+......+.... ........++|+|..+.+++||
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6765 666554454678999999999999999986643322100 1111245999999444455555
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=0.00027 Score=82.71 Aligned_cols=327 Identities=11% Similarity=0.006 Sum_probs=190.4
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeec-----------CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeec
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 417 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l-----------~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~ 417 (737)
++|. +..|+..+.+.+++... ..+..+.. +.......|.++...++|. |-.|+.++-|..++.
T Consensus 267 ~~g~-lWigt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 267 KDNK-LWIATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp TTSE-EEEEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred CCCC-EEEEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 4454 55566656788888764 22222111 0111356799999999998 456676677777775
Q ss_pred cCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEe---cCCC
Q 004683 418 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF---ANPP 492 (737)
Q Consensus 418 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~---~~~~ 492 (737)
..... ..+...... .....-....|.++... ...|..|. ++-|..||..++...... ....
T Consensus 341 ~~~~~-----------~~~~~~~~~---~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 341 APPTF-----------HTWSYSPTQ---MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp SCCSC-----------EEEC----C---CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred CCCcc-----------eeeccCccc---cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 53221 111100000 00000134568888888 44555666 677899998754332111 1234
Q ss_pred CCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEc--CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004683 493 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 493 ~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~--~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~ 570 (737)
..|.++...++|.|.+|+.++-+..+|..+++...... .....|.++...++|.. ..|+. +.|..||..++....
T Consensus 407 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~- 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIH- 483 (781)
T ss_dssp SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCE-
T ss_pred cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEe-
Confidence 57888888877766667877789999988775433221 13467899988888864 44555 568899987643211
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCC--CCCCCeEEEEEccCCCEEEEEecC
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKS 648 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~sgs~d 648 (737)
....... ......|.++...++|...+++.++.+..||..+++.. .+... -....|.++...++|.+.++.. +
T Consensus 484 --~~~~~~~-~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 484 --HYDTSNS-QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp --EECTTTS-SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-T
T ss_pred --cccCccc-ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-C
Confidence 1101100 00015789999999998877776566888998766543 33211 1245789999988888665544 6
Q ss_pred CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 649 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 649 g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
|.|..||..+++. ..+.... |-....+. ++...+ +|.+.++ +.+| |..+++.+.+
T Consensus 559 Glv~~~d~~~~~~-~~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 559 GLVCFPSARNFDY-QVFQRKE----GLPNTHIR--AISEDK-NGNIWAS-TNTG-ISCYITSKKC 613 (781)
T ss_dssp EEEEESCTTTCCC-EEECGGG----TCSCCCCC--EEEECS-SSCEEEE-CSSC-EEEEETTTTE
T ss_pred CceEEECCCCCcE-EEccccC----CCCCceEE--EEEECC-CCCEEEE-cCCc-eEEEECCCCc
Confidence 7658899887763 3332211 21122344 777777 6665554 3444 7777776543
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=4.5e-05 Score=78.93 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=143.8
Q ss_pred eEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecC--------------------CCCCeEEEEEcC-CCeEEEEEC
Q 004683 456 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--------------------PPPIATYFILLP-QDLFAFGFD 511 (737)
Q Consensus 456 V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~s~-~~~l~sgs~ 511 (737)
..+++|. +++++++. ++.|..||..++... .+.. ....+..+++.+ ++.|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4457777 66566666 899999998765433 2221 013578899998 566666666
Q ss_pred CCeEEEEecCCCcEEEEEcC-----CCcceEEEEEeC-CCCEEEEEeC-----------------CCcEEEEeCCCCcee
Q 004683 512 DSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKL 568 (737)
Q Consensus 512 dg~I~vwd~~~~~~~~~l~~-----~~~~v~~l~~sp-~g~~l~s~s~-----------------dg~I~lwdl~~~~~~ 568 (737)
.+.|..+|..++.. ..+.. .......+++.+ +|+..++... ++.|..||..++...
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688899776543 22211 113468899999 9987766432 367888888764321
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCCc--eeEEecCCCCCCCeEEEEEccCCCEEEE
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s 644 (737)
. + ...- .....++++|+|+.|+++ ..+.|.+|++.... ....+.. ..+ ...+++.++|++.++
T Consensus 179 ~---~---~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 L---L---LKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp E---E---EEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEE
T ss_pred E---e---ccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEE
Confidence 1 1 1110 245679999999877664 56889999987421 1122211 123 788999999987766
Q ss_pred Eec----------CCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 645 SCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 645 gs~----------dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
... .+.|..+|.. ++.+..+.... |..- ..+.++++ . ++.++++...++.|..+++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~~--~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFAG--EHFEQIQE-H-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTTT--SCCCEEEE-E-TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCcc--ccceEEEE-e-CCEEEEeecCCCceEEEecccc
Confidence 544 4678888864 77666664321 1101 12335555 3 5667777667889999988643
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=0.00049 Score=80.53 Aligned_cols=321 Identities=12% Similarity=0.021 Sum_probs=186.1
Q ss_pred EEEEecCCeEEEeecCccCCCCceeeeecCC----CCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccce
Q 004683 354 AVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 429 (737)
Q Consensus 354 la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~----~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~ 429 (737)
+..++.++.+..|+... +.+..+.... ......|.++...++|.+.+ |+.+ -+.+||..+...
T Consensus 176 lwigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~------- 242 (781)
T 3v9f_A 176 LYIGHVEGGLSILSLND----KSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF------- 242 (781)
T ss_dssp EEEEETTTEEEEEETTT----TEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE-------
T ss_pred EEEEecCCCeEEEcCCC----CceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE-------
Confidence 44456565677787663 3333321100 00135799999999998655 4444 577777543211
Q ss_pred eeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCeEEEEECCCCcEEEEec--------------CCCC
Q 004683 430 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--------------NPPP 493 (737)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~~~~~~~--------------~~~~ 493 (737)
..+........ .-....|.++... ...+..|. .+-|.++|..++....... ....
T Consensus 243 ----~~~~~~~~~~~-----~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 243 ----TNFHNNPGNIH-----GALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp ----EC----------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred ----EEEEcCCCccc-----cccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence 00100000000 0134568888887 66666777 4788999987765332111 1235
Q ss_pred CeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEc--------C-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 004683 494 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--------G-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 494 ~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~--------~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~ 564 (737)
.|.++...++|.|..|+.++-|..++..++....... . ....|.++...++|. +..|+.++.|..||..+
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 6889988888877778878889999987654332210 0 235688998888876 45567677799999876
Q ss_pred CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEE
Q 004683 565 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIY 643 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~ 643 (737)
+.... ...-..... ..|.++...++|...+.+.++.|..+|..+++.. .+.. ......|.++...++|.+.+
T Consensus 393 ~~~~~---~~~~~~~~~---~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 393 RVAIY---NKENRELLS---NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEEEC---C-----CCC---SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred CeEEE---ccCCCCCCC---cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE
Confidence 32111 100001111 5799999998888777666678999998776543 3321 11256789998888887554
Q ss_pred EEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 644 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 644 sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
|+. +-|..||..+++........ ..+... ..+.++...+ ++.+.+ |+.++.|..|+..+++
T Consensus 466 -gt~-~Gl~~~~~~~~~~~~~~~~~---~~~~~~--~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKVIHHYDTS---NSQLLE--NFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp -EET-TEEEEEESSSSSCCEEECTT---TSSCSC--SCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred -EEC-CceEEEeCCCCeEEecccCc---cccccc--ceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 444 56899998887654332111 000001 2344788777 566544 4454457778876654
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.54 E-value=5e-05 Score=73.97 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=124.8
Q ss_pred CCCeEEEEEe-CCEEEEEe-C--CeEEEEECCCCcEEEEecCCCCCe-EEEEEcCCCeEEEEECCCeEEEEecCCCcEEE
Q 004683 453 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 453 ~~~V~~v~~s-~~~l~s~s-d--g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
..-...+.|+ +.++.+.+ + +.|+++|+.+++.++.+.-..... -.+++..+......-.++.+.+||..+.+.+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3457789999 55555555 4 489999999999999886433221 23444322244445678899999999999999
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCc
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 606 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~ 606 (737)
++..... -..+ .+++..++++..++.|.++|..+.+......+..-.... ..++.+.+. +|+..+.. .+..
T Consensus 100 ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 100 RFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCe
Confidence 8874332 2333 456777777777889999999986554433332101111 245566665 66655445 6789
Q ss_pred EEEEeCCCCceeEEecCC-----------CCCCCeEEEEEccCCCEEEEEec
Q 004683 607 IDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 607 I~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
|.+.|.++++.+..+... ......++++++|+++.|++.+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998877532 11346789999998777766654
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=0.00011 Score=75.93 Aligned_cols=247 Identities=11% Similarity=0.001 Sum_probs=146.3
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCC-------CCCCCeEEEEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-------DPKDSISCFAL 461 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~-------~h~~~V~~v~~ 461 (737)
....+++|+++|+++.++..++.|..|+..+... ..|.............+ .....+..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 3457789999999778888889998887653211 11111000000000000 01134678888
Q ss_pred e--CCEEEEEe-CCeEEEEECCCCcEEEEecC-----CCCCeEEEEEcC-CC-eEEEEEC-----------------CCe
Q 004683 462 R--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------DSS 514 (737)
Q Consensus 462 s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~-~l~sgs~-----------------dg~ 514 (737)
. +..|+.+. .+.|..+|..++.. ..+.. .......+++.+ +| ..++-.. ++.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 7 45666665 55688888776542 22211 113467899999 88 4444322 367
Q ss_pred EEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 515 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 515 I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
|..||..+++....... -...+.++++|+|+.++.+ +..+.|..|++.+........+. . .+ + ...+++.
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~--~~--g-P~gi~~d 237 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV---K--IP--N-PGNIKRN 237 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE---E--CS--S-EEEEEEC
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE---e--CC--C-CCCeEEC
Confidence 99999877764332221 2345679999999866555 55689999998752110111111 1 11 3 6789999
Q ss_pred cCCCEEEEE-e----------cCcEEEEeCCCCceeEEecCCCC--CCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 594 PDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 594 p~g~~l~~~-~----------dg~I~iwd~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
++|++.++. . .+.|..+|. .++.+..+....- ...++++++ .++.+.++...++.|.++++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999877764 3 467889987 4777766654211 234666766 4566555656678888888764
No 263
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.0011 Score=68.59 Aligned_cols=276 Identities=9% Similarity=0.081 Sum_probs=152.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 466 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 466 (737)
...+.+|.|.+++..++ ++..|.|. ...+.+.. |....... ......+.++.+. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~t-------------W~~~~~~~------~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQT-------------WEPRTLVL------DHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSS-------------CEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCC-------------CeECCCCC------CCCCccEEEEEecCCeEE
Confidence 45799999988888777 55667652 22221111 33211000 0124467888888 5555
Q ss_pred EEEeCCeEEEEECCCCcEEEEec---CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE-EEcCCCcceEEEEE
Q 004683 467 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAY 541 (737)
Q Consensus 467 ~s~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~-~l~~~~~~v~~l~~ 541 (737)
+++..+.|.. ..+.|+.-.... .+...+..+.+.+++ .++++ .++.|..- .+.|+.-. ........+..+++
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5544775544 333344433332 233457778877777 55544 46654332 22343322 22345567899999
Q ss_pred eCCCCEEEEEeCCCcEEEEeC--CCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeE
Q 004683 542 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 619 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~ 619 (737)
.|++.+++++...+..+-+|- .++ ..+. .... ..+..+++.+++..++++.+|.+++.+...++.-.
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG~tW-----~~~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQTAW-----EPHN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTCSSC-----EEEE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cCCCcEEEEECCCcEEEEeCCCCCce-----eECC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 999888776654443444443 222 1121 1112 57889999999988877888888877533243322
Q ss_pred EecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEE
Q 004683 620 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 697 (737)
Q Consensus 620 ~~~~~--~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 697 (737)
.+... .+...+.++.+.+++..++++. +|.| .+....|+.-..+.... +. ...++ ++.|.+ ++ .+++
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~-~~~~~--~v~~~~-~~-~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KV-PSNFY--KILFFS-PD-QGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TS-SSCCC--EEEEEE-TT-EEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CC-CCCeE--EEEEEC-CC-ceEE
Confidence 22211 1234588999998887766654 6766 34455554333322100 00 12344 777765 44 5666
Q ss_pred EECCCcEEEEec
Q 004683 698 GLTNGRVHVIEP 709 (737)
Q Consensus 698 ~s~Dg~V~iWd~ 709 (737)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 678897766653
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.00059 Score=71.35 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=143.9
Q ss_pred EEEEe-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCCCc
Q 004683 458 CFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 458 ~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
|.+.. ..+|+.+....|+..++........... ...+..++|++.+ .|+ +-...+.|..+++.++.....+.....
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 116 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence 43433 4556666666788888876554444433 3457799999766 444 545678999999887654444433334
Q ss_pred ceEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-CcEEEE
Q 004683 535 RITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVY 610 (737)
Q Consensus 535 ~v~~l~~sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d-g~I~iw 610 (737)
....+++.+.+..| ++-...+.|.+.++..... .. +..... .....++++|.+..|+.+ .. +.|..+
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~---l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV---LLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EE---EEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 56789999855544 5555578899999876321 11 111111 467899999977666653 44 789999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
++.. .....+... .......++++|++..|+.+ +..+.|..+++........+.. ....+.++++.
T Consensus 188 ~~dG-~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~giav~- 254 (349)
T 3v64_C 188 SMDG-SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----------GLPHPFAITVF- 254 (349)
T ss_dssp ETTS-CSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSSEEEEEEE-
T ss_pred eCCC-CCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC----------CCCCceEEEEE-
Confidence 9853 333333221 24567899999877666654 4567899999875443322221 01123466663
Q ss_pred CCCCEEEEEECCCcEEEEecCCCc
Q 004683 690 LEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++.++.+-...+.|...+..+++
T Consensus 255 -~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 255 -EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCEEEEecCCCCeEEEEEccCCC
Confidence 45666666677888888865554
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00028 Score=72.37 Aligned_cols=223 Identities=11% Similarity=-0.030 Sum_probs=134.5
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 389 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 389 ~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
.....++|+|+|+.+++-..++.|..|+.... .. ..|. ....+..+++. |+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~------~~-----~~~~--------------~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN------QQ-----IHAT--------------VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC------EE-----EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc------eE-----EEEe--------------CCCCceeEEEcCCCcEE
Confidence 45788999999996666657888887775421 10 1111 22357788998 6655
Q ss_pred EEEe-CC--eEEEEECCCCcEEEEecC-CCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcE-EEEEc---------C
Q 004683 467 FSAS-GG--KISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 531 (737)
Q Consensus 467 ~s~s-dg--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~-~~~l~---------~ 531 (737)
++.. .. .|..+|..+++....... .......++..+++ .+++...++.|+.+|..+++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 5543 22 477778777775443322 22233455555655 444444688999999876532 21111 1
Q ss_pred CCcceEEEEEeCCCCEEEEE-eCCCcEEEEeCCC-CceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEE
Q 004683 532 HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 608 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~ 608 (737)
.-...+.+ +|+++.++.+ +..+.|..||+.. +.......+. .. .....++++++|++.++. ..+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---cc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 7888766554 4567899999875 2211111111 11 235578999999876663 678999
Q ss_pred EEeCCCCceeE--EecCCCCCCCeEEEEEc---cCCCEEEEEecCC
Q 004683 609 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 649 (737)
Q Consensus 609 iwd~~~~~~~~--~~~~~~h~~~v~~~~~s---p~~~~l~sgs~dg 649 (737)
++|.. ++... .+.. .....++++|. |+++.|++++..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99975 65532 2322 13568999998 8988877766543
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.00069 Score=69.78 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=139.9
Q ss_pred EEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCC----CcEEEEEcCCCcceEE
Q 004683 465 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT----KKTKAKLKGHQNRITC 538 (737)
Q Consensus 465 ~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~----~~~~~~l~~~~~~v~~ 538 (737)
+|+.+....|+..|+.+.+....+. ....+..++|++.+ .|+ +-..++.|..+++.+ ......+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4556666789999998776655544 34467799999876 444 445568999999876 2222223322245678
Q ss_pred EEEeCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-CcEEEEeCCC
Q 004683 539 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 614 (737)
Q Consensus 539 l~~sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d-g~I~iwd~~~ 614 (737)
+++++.+..+ ++-...+.|.++|+..... .. +..... .....++++|.+..|+.+ .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~---~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KT---LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE---EE---EEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCce---EE---EEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 9999755544 5556678999999876321 11 111111 467899999977666553 33 689999885
Q ss_pred CceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 615 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 615 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
|.....+... .-.....++++|++..|+.+. ..+.|..+|+............ .....+.++++. ++.
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~--------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEE--TTE
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC--------CccCCcEEEEEE--CCE
Confidence 4444333221 245688999999777666554 5679999998754332222110 011123466664 356
Q ss_pred EEEEEECCCcEEEEecCCCc
Q 004683 694 RIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 694 ~las~s~Dg~V~iWd~~~~~ 713 (737)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 66666677889888876654
No 267
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.35 E-value=2.9e-07 Score=72.60 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhcccccc--------HHHHHHHhhcC-ChHHHHHHHh
Q 004683 141 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--------INYFREYITSG-EWDNAEKYLS 195 (737)
Q Consensus 141 ~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~--------~~~~~~~i~~G-~w~~~~~~l~ 195 (737)
.++||++||++||+|.||.+||.+|+.||+|... +..|.+.|++| +|.+++..++
T Consensus 4 tsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~ 67 (90)
T 2xtc_A 4 TSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 67 (90)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999998762 67888888888 6666666554
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.35 E-value=0.0011 Score=68.10 Aligned_cols=203 Identities=7% Similarity=-0.060 Sum_probs=127.1
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCCC-e-EEEEECCCeEEEEecCC
Q 004683 453 KDSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCT 522 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~-l~sgs~dg~I~vwd~~~ 522 (737)
...+..++|+ ++.++.+. ++.|..+++.+ ......+.........+++.+.+ . .++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3457789998 55666555 68999999875 22222233222345688898755 4 44555678999999875
Q ss_pred CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 523 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 523 ~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~d--g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
......+...-.....++++|.+..++.+... +.|...++..... .. +..... .....++++|++..|+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~---~~~~~~---~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EE---EECSSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EE---EEECCC---CCceEEEEeccCCEEE
Confidence 54433333334567899999976666555543 6788888875211 11 111111 4678999999887777
Q ss_pred EE--ecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 601 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 601 ~~--~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.+ ..+.|..+|+.. .....+.. ........++++. .+.++++-...+.|..++..+|+....+.
T Consensus 180 ~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 64 567899999964 33333321 1123456788885 45555566667899999988887665553
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.34 E-value=0.00053 Score=70.24 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=134.0
Q ss_pred CCeEEEEEe--CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-CC-eEEEEecCCCcEEE
Q 004683 454 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS-SILVHCPCTKKTKA 527 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-dg-~I~vwd~~~~~~~~ 527 (737)
.....++|+ ++++++.. ++.|..||... +....+. .......+++.++| .+++... ++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 557789998 66555554 78999999875 3433333 23467899999999 5554433 22 57778877777543
Q ss_pred EEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec--ee-eee-cccCCCCCCCCeEEEEEecCCCEEEEE
Q 004683 528 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 602 (737)
Q Consensus 528 ~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~--~~-~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~~ 602 (737)
.... .......++..+++..+++...++.|..+|..++..... .. +.. ...... .....+ +|+++.|+++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 3221 122334555555555455554688999999875321000 00 000 001111 234455 8888877764
Q ss_pred --ecCcEEEEeCCC-Cce--eEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCcc
Q 004683 603 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 677 (737)
Q Consensus 603 --~dg~I~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~ 677 (737)
..+.|..||+.. +.. ...+.. ......++++++|++.++....+.|.+++.. ++........ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~ 252 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q 252 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence 568899999864 321 112211 1245678999999887777778899999975 6543221111 1
Q ss_pred CceeeEEEEEc---cCCCCEEEEEECC
Q 004683 678 LELYPLVIAAH---PLEPNRIALGLTN 701 (737)
Q Consensus 678 ~~v~~~~v~~s---p~d~~~las~s~D 701 (737)
....+.+++|. | ++..|..++..
T Consensus 253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred ccCCceEEEEecccC-CCCEEEEECCC
Confidence 11235689998 7 66655555443
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00056 Score=72.66 Aligned_cols=227 Identities=12% Similarity=0.008 Sum_probs=142.7
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~-l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
..+|+.+....|+..++..+........ ...+..++|++.+ . +++-...+.|..+++..+.....+.........++
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 4566666667888888876655444433 3457799999766 4 44555678999999887654444443334567889
Q ss_pred EeCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-CcEEEEeCCCCc
Q 004683 541 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN 616 (737)
Q Consensus 541 ~sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d-g~I~iwd~~~~~ 616 (737)
+.+.+..| ++-...+.|.+.++..... .. +..... .....++++|.+..|+.+ .. +.|..+++...
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~---l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~- 235 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHR---KV---LLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 235 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSC---EE---EECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCce---EE---eecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-
Confidence 99855554 5555567888888875221 11 111111 467899999987776654 34 78999998543
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 695 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 695 (737)
....+... .......++|+|++..|+.+ +..+.|..+++........+.. ....+.++++. ++.++
T Consensus 236 ~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------~~~~P~giav~--~~~ly 302 (386)
T 3v65_B 236 GRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----------GLPHPFAITVF--EDSLY 302 (386)
T ss_dssp SCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS----------SCSSEEEEEEE--TTEEE
T ss_pred CcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC----------CCCCceEEEEE--CCEEE
Confidence 33333221 24567899999876666554 4568899999875443322221 11124466663 45667
Q ss_pred EEEECCCcEEEEecCCCc
Q 004683 696 ALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 696 as~s~Dg~V~iWd~~~~~ 713 (737)
.+....+.|..++..+++
T Consensus 303 ~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EeeCCCCeEEEEECCCCc
Confidence 777677888888865554
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.30 E-value=0.0016 Score=68.11 Aligned_cols=201 Identities=8% Similarity=-0.051 Sum_probs=129.5
Q ss_pred CCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEE
Q 004683 454 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
..+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ .+++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 447789998 55665555 6899999998665444443333345688898765 44555567799999987654433
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEe-CC-CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 603 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s-~d-g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~ 603 (737)
.+...-.....++++|.+..+.... .. +.|..+++.... ...+..... .....++++|++..|..+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCcceEEEeCCCCEEEEEECC
Confidence 3433345678999999666555444 44 778888887621 111111111 467899999987777764 5
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.+.|..+|+.... ...+... ......++++ ..+...++-...+.|..++..+|+....+.
T Consensus 224 ~~~I~~~~~dG~~-~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSH-RKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCS-CEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCc-eEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999986433 2333221 2455678888 445555566667889998877776655554
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.0011 Score=65.45 Aligned_cols=218 Identities=10% Similarity=0.000 Sum_probs=132.8
Q ss_pred EecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 004683 487 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 563 (737)
Q Consensus 487 ~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~ 563 (737)
.+.+-...+..++|+|++ ++++...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445666689999999987 55567788899999988 888777632 22567889999999877776677889999887
Q ss_pred CCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecC--cEEEEeC-CCCceeEEe-----cCCCCCCCeEEEE
Q 004683 564 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYAT 634 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg--~I~iwd~-~~~~~~~~~-----~~~~h~~~v~~~~ 634 (737)
............+..+..+.+.....++|+|.+..|.++ ... .|+.|+- .....+... ....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 643211111111111111112568899999999777764 333 4555551 011112211 1111244678999
Q ss_pred EccC-CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 635 YSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 635 ~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
+.|. +++++.......+.++|.. |+.+..+....-. .|-...--..-.+++.| +|+++++ ++.+.++++..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9985 4555666667889999966 5566666543100 00000011244899999 7876666 56666666654
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.001 Score=70.60 Aligned_cols=202 Identities=8% Similarity=-0.059 Sum_probs=130.7
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEE
Q 004683 453 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 526 (737)
Q Consensus 453 ~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~ 526 (737)
...+..++|. ++.|+.+. .+.|..++...+.....+.........+++.+.+ .+++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457789998 56665555 6899999998665444443333345578888765 4455556778999998755444
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 602 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~-d-g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-- 602 (737)
..+...-.....++++|.+..|..+.. . +.|..+++.... ...+..... .....++++|++..|+.+
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEEGGGTEEEEEET
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCeeeEEEeCCCCEEEEEEC
Confidence 444434456789999997766655543 3 678888887521 111111111 457899999887777664
Q ss_pred ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 603 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 603 ~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
..+.|..+|+..... ..+... ......++++ ..+.++++....+.|..++..+|+....+.
T Consensus 266 ~~~~I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSHR-KAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 567899999864333 333221 2455678888 445555666677899999977777666654
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.22 E-value=9.8e-05 Score=84.59 Aligned_cols=286 Identities=11% Similarity=0.007 Sum_probs=144.8
Q ss_pred EEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccC-CCCCCCeEEEEEe--CCEEEE
Q 004683 393 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFALR--GSHLFS 468 (737)
Q Consensus 393 ~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~-~~h~~~V~~v~~s--~~~l~s 468 (737)
++++.| +|+.++.|+.++.- . .+.......+.+||+.++........ ..+.....++++. ++.++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~-----~-----~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDA-----F-----GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTT-----T-----CSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred eEEEEecCCEEEEEecccccc-----c-----ccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe
Confidence 567777 88888888764310 0 00000000123455544442211100 0122333345555 788888
Q ss_pred Ee--CCeEEEEECCCCcEEEEecCCCCC-eEEEEEcCCC-eEEEEE-CC-----CeEEEEecCCCcEEEEEcC-----CC
Q 004683 469 AS--GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGF-DD-----SSILVHCPCTKKTKAKLKG-----HQ 533 (737)
Q Consensus 469 ~s--dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~-~l~sgs-~d-----g~I~vwd~~~~~~~~~l~~-----~~ 533 (737)
|+ ++.+.+||..+++....-..+..+ -.+++..+++ .++.|+ .+ ..+.+||..+++-.. +.. ..
T Consensus 260 GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~ 338 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPML 338 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGC
T ss_pred CCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccc
Confidence 88 468999999876544332222222 2345666788 777777 34 479999998875433 210 00
Q ss_pred cceEEEEEeCCCCEEEEEeCCC---------cEEEEeCCCCceeeceeeeecccCC--CCCCCCeEEEEEec-CCCEEEE
Q 004683 534 NRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIVNHIQFHP-DQIHLLS 601 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg---------~I~lwdl~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~sp-~g~~l~~ 601 (737)
..-....+..++...+.++.+| .+..||..+..... .......++ .+....-.++.+.. +++.++.
T Consensus 339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 0000011234555555565444 46788887643221 111011100 00001233455544 5666666
Q ss_pred E-ecC-----------cEEEEeCCCCceeEEe-cCCCCCCCeEEEEEccCCCEEEEEecC-----------CeEEEEEcC
Q 004683 602 I-HEG-----------QIDVYEAPTLNHTSQL-VPDKMDLPITYATYSCDGKCIYVSCKS-----------GHVKVFDTS 657 (737)
Q Consensus 602 ~-~dg-----------~I~iwd~~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~sgs~d-----------g~I~vwd~~ 657 (737)
| .++ .|.+||..+....... ........-.+++..|++++++.|+.+ ..+.+||..
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 4 322 6888888776654332 011112223455667899999998864 568999998
Q ss_pred CCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC
Q 004683 658 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 700 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 700 (737)
+.+-.. +... + ....+..+....| |+++++.||.
T Consensus 497 t~~W~~-~~~~---~----~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 497 QDTFYK-QNPN---S----IVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp GTEEEE-CCCC---S----SCCCTTEEEEECT-TSCEEEEECC
T ss_pred CCceee-cCCC---C----CccccccHhhcCC-CcEEEecCCC
Confidence 765322 1110 1 1111122445567 7899999985
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0023 Score=68.26 Aligned_cols=205 Identities=9% Similarity=-0.048 Sum_probs=130.8
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCC----cEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecC
Q 004683 452 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~ 521 (737)
....+..++|+ ++.|+.+. .+.|+.+++... .....+.........+++.+.+ ..++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889998 56666655 688999998752 2333333344567789998854 45555567899999988
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~--dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.......+...-.....++++|.+..|+.... .+.|...++..... ..+..... .....++++|++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l---~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEECCC---CceEEEEEEeCCCEE
Confidence 66554444434456789999997666665553 36888888876221 11111111 467899999988777
Q ss_pred EEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 600 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 600 ~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
+.+ ..+.|..+|+...................++++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 764 567899999864433222222112345567777 334455566667889999988887666554
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=7.5e-05 Score=85.59 Aligned_cols=268 Identities=8% Similarity=0.018 Sum_probs=145.9
Q ss_pred ccCC-CCCEEEEEecCC-----------eEEEeecCccCCCCceeee-ecCCCCCCCCeEEEEEecCCCEEEEEEC-CCc
Q 004683 346 TSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQ-TAT 411 (737)
Q Consensus 346 ~~sp-dg~~la~~s~dg-----------~v~iW~~~~~~~~~~~~~~-~l~~~~h~~~V~~v~fspdg~~L~s~s~-dg~ 411 (737)
.+.| +|+.++.|+.+. .+.+||.... ..... .++. .+.....++++.++|+.++.|+. ++.
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~----~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG----IVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC----CBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC----cEEeCcccCC-CCCCccccccCCCCCCEEEeCCCCCCc
Confidence 3566 899999987643 4788888752 22211 1221 12333446788899999999985 457
Q ss_pred EEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe--C-----CeEEEEECCCCc
Q 004683 412 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLETFQ 483 (737)
Q Consensus 412 i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s--d-----g~i~vwd~~~~~ 483 (737)
+.+||..+.. |..... +. .......++.+. |+.++.|+ + ..+.+||..+++
T Consensus 267 v~~yd~~t~~--------------W~~~~~-----~~--~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 267 TSLYDSSSDS--------------WIPGPD-----MQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEEGGGTE--------------EEECCC-----CS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEEecCcCCc--------------eeECCC-----CC--ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 8888766432 321110 00 111222334443 77777777 3 469999998876
Q ss_pred EEEEe----c-CCCCCeEEEEEcCCC-eEEEEECC---------CeEEEEecCCCcEEEEEcCCCc---------ceEEE
Q 004683 484 TLATF----A-NPPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQN---------RITCL 539 (737)
Q Consensus 484 ~~~~~----~-~~~~~v~~~~~s~~~-~l~sgs~d---------g~I~vwd~~~~~~~~~l~~~~~---------~v~~l 539 (737)
....- . .....- ...+..++ .++.|+.+ ..+..||..+.........+.. .-.++
T Consensus 326 W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 44320 0 000000 01223445 44555444 3567888887764433322211 22344
Q ss_pred EEeC-CCCEEEEEeCCC-----------cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec--
Q 004683 540 AYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-- 604 (737)
Q Consensus 540 ~~sp-~g~~l~s~s~dg-----------~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d-- 604 (737)
.+.. +++.++.|+.++ .|.+||..+..-.... ...++.. ..-.+++..|+|+.++.+ .+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBSBC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcccC
Confidence 4543 777888887543 5778887764321110 0012221 122355677899988884 32
Q ss_pred ---------CcEEEEeCCCCceeEEecCCCC-CCCeEEEEEccCCCEEEEEec
Q 004683 605 ---------GQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 605 ---------g~I~iwd~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~sgs~ 647 (737)
..+.+||..+.+... +..... ........+.|+|+.++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999997765332 211111 222234556799999999985
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0025 Score=67.94 Aligned_cols=229 Identities=11% Similarity=-0.008 Sum_probs=142.9
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE-ECCCeEEEEecCCC----cEEEEEcCCCcce
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTK----KTKAKLKGHQNRI 536 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg-s~dg~I~vwd~~~~----~~~~~l~~~~~~v 536 (737)
..+|+.+....|+..++.......... ....+..++|++.+ .|+.. ...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 345666667889999988665544443 34567799999866 55444 45678999998752 2333333344567
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE---ecCcEEEEeC
Q 004683 537 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA 612 (737)
Q Consensus 537 ~~l~~sp~-g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~---~dg~I~iwd~ 612 (737)
..+++.+. +++.++-...+.|.+.++..... ..+..... .....++++|.+..|+.+ ..+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 88999984 44555555678899999886321 11111111 467899999977666654 2478999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
.. .....+... .-.....+++++++..|+.+. ..+.|..+|+............ ..--.+.+++.. .
T Consensus 233 dG-~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 NG-VDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--E 300 (400)
T ss_dssp TS-CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--T
T ss_pred CC-CccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--C
Confidence 54 333333221 246788999998777776654 4688999998765433333211 011123456663 3
Q ss_pred CCEEEEEECCCcEEEEecCCCc
Q 004683 692 PNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+.++.+-...+.|..++..+++
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCC
T ss_pred CEEEEecCCCCeEEEEEcCCCC
Confidence 4566677777889888876664
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.0011 Score=65.31 Aligned_cols=199 Identities=16% Similarity=0.120 Sum_probs=130.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCc
Q 004683 451 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 524 (737)
Q Consensus 451 ~h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~ 524 (737)
+-...+..++|+ ++.|++.. ++.|...|.. ++.++.+. +.....-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 455679999999 56666555 6889999998 88888875 323567788999888 66666567899999876544
Q ss_pred E---EEEEc------CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-----cc-cCCCCCCCCeEE
Q 004683 525 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----FQ-TGLVPETTIVNH 589 (737)
Q Consensus 525 ~---~~~l~------~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~-----~~-~~~~~~~~~v~~ 589 (737)
. +.... ........++|+|.++.|+++.......+|.++.- .....+.. +. .... ..+..
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~--~~~~~l~i~~~~~~~~~~~~---~d~S~ 177 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL--LSSNELHISKDKALQRQFTL---DDVSG 177 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST--TCSSCCEEEECHHHHHTCCS---SCCCE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc--ccCCceeeecchhhcccccc---CCcee
Confidence 2 22221 12344689999999988777776655556555420 00001110 00 1111 45789
Q ss_pred EEEecCCCEEEE-E-ecCcEEEEeCCCCceeEEecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEEEcC
Q 004683 590 IQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 590 l~~sp~g~~l~~-~-~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~ 657 (737)
++++|....+++ + .+..+.++|.. ++.+..+.... + -...-.|+|.++|+ |+..++.+.++++...
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 999998766655 6 66789999975 66666554321 0 13568999999998 5556888888887654
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.05 E-value=0.017 Score=59.58 Aligned_cols=189 Identities=10% Similarity=0.013 Sum_probs=108.2
Q ss_pred CCeEEEEEe--CCEEEEEeCCeEEEEECCCCcEEEEe-cCCCCCeEEEEEcCCC-eEEEEECCCeEEE-Eec--CCCcEE
Q 004683 454 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATF-ANPPPIATYFILLPQD-LFAFGFDDSSILV-HCP--CTKKTK 526 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~-~l~sgs~dg~I~v-wd~--~~~~~~ 526 (737)
..+..+.+. +..++++.+|.|.. ..+.|+.-... ......+..+++.+++ .++++. +|.+.. .|- .+-+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeEC
Confidence 456777776 44455444665433 22234333322 3455678899999988 666554 454443 442 222222
Q ss_pred EEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecc-cCCCCCCCCeEEEEEecCCCEEEEEecC
Q 004683 527 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEG 605 (737)
Q Consensus 527 ~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~~~dg 605 (737)
. ......+..+++.++++.+ .++.+|.+++.+...+.. ...+. .+ .... ..+..+++.+++..++++.++
T Consensus 200 ~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t--W~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 200 N--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN--WGELL-SPLRRNS---VGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp E--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE--ECCCB-CTTSSCC---SCEEEEEESSSSCEEEEESTT
T ss_pred C--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe--eEecc-CCcccCC---cceEEEEecCCCEEEEEeCCC
Confidence 1 2345678899999988765 455678877764332111 11111 11 0111 358899999988888888888
Q ss_pred cEEEEeCCCCceeEEecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 004683 606 QIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFD 655 (737)
Q Consensus 606 ~I~iwd~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd 655 (737)
.| .+....|+.-..+... .....+.++.|.+++. +++++.+|.|.-++
T Consensus 271 ~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 271 AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 77 4455555544433311 1235678888876554 66666789876665
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.01 E-value=0.00028 Score=82.06 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=113.4
Q ss_pred CeEEEEEc-CCC-eEEEEE-CCC----eEEEEecCCC-cEEE-EEcCCCcceEEEEEeCCCCEEEEEeCC-----CcEEE
Q 004683 494 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 559 (737)
Q Consensus 494 ~v~~~~~s-~~~-~l~sgs-~dg----~I~vwd~~~~-~~~~-~l~~~~~~v~~l~~sp~g~~l~s~s~d-----g~I~l 559 (737)
.+....|| ||| .||.+. .+| .|+++|+.++ +.+. .+. .....++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 999 666443 333 5999999998 6321 111 123468899999988877765 25788
Q ss_pred EeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E---ecCcEEEEeCCCCc-ee--EEecCCCCCCCeEE
Q 004683 560 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 632 (737)
Q Consensus 560 wdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~---~dg~I~iwd~~~~~-~~--~~~~~~~h~~~v~~ 632 (737)
+++.++.... ..+. ..... .....+.|+|||++|+. + ....|+++|+.++. .. ..+... ......+
T Consensus 252 ~~lgt~~~~~-~lv~--~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSED-VCLY--EEHNP---LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYD 324 (751)
T ss_dssp EETTSCGGGC-EEEE--ECCCT---TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEE
T ss_pred EECCCCchhc-EEEE--ecCCC---ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEE
Confidence 8887643111 1111 11111 34568899999999886 3 23468999998752 22 344332 2455566
Q ss_pred EEEccCCCEEEEEecC----CeEEEEEcCCC-eeEE-EEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEE
Q 004683 633 ATYSCDGKCIYVSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 706 (737)
Q Consensus 633 ~~~sp~~~~l~sgs~d----g~I~vwd~~~~-~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i 706 (737)
+.|+.++.+++.+..+ ..|+.+++.++ .... .+. + ...+.+..+.+. ++.++++...+|..++
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~--------~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H--------SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C--------CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C--------CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 6655444444454443 36777787653 2222 222 1 222333355554 3456777788886554
Q ss_pred Ee
Q 004683 707 IE 708 (737)
Q Consensus 707 Wd 708 (737)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.99 E-value=0.0016 Score=70.21 Aligned_cols=245 Identities=11% Similarity=-0.032 Sum_probs=144.7
Q ss_pred CeEEEEEe-C---CEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC---C-eEEEEecCCCc
Q 004683 455 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK 524 (737)
Q Consensus 455 ~V~~v~~s-~---~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d---g-~I~vwd~~~~~ 524 (737)
....++|+ . ..|+.+. .+.|+.+|..++..... .........++++++| .+++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 35578887 3 6676666 58999999987765544 3444568899999999 55554422 1 23334432221
Q ss_pred E-EEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE
Q 004683 525 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 602 (737)
Q Consensus 525 ~-~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 602 (737)
. ...+. .-.....++++| +|.+.++-..++.|+.+|..++.... .+. ..+.. .....++|+|+|+.|+++
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence 1 01111 123456788999 77766666667889999988643211 111 11111 234579999999976664
Q ss_pred --ecCcEEEEeCC--CCce--eEEecCC-C------------CCCCeEEEEE---------ccCCCEEEEEecCCeEEEE
Q 004683 603 --HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 603 --~dg~I~iwd~~--~~~~--~~~~~~~-~------------h~~~v~~~~~---------sp~~~~l~sgs~dg~I~vw 654 (737)
..+.|+.++.. ++.. ...+.+. . .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998865 2321 1122111 0 1234677999 6777777777778899999
Q ss_pred EcCCCeeEEEEecccc-cCCCCccC-------ceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 655 DTSTLELRCQINLTAY-AQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 655 d~~~~~~~~~~~~~~~-~~~g~~~~-------~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
+. +|.... +..... ...|..++ --++..+++.|.++.++++-..++.|+.++++
T Consensus 371 ~~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 565433 322110 00011011 12366899994367777777777888888764
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0029 Score=68.14 Aligned_cols=244 Identities=10% Similarity=-0.015 Sum_probs=140.5
Q ss_pred CeEEEEEe---CCEEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECCC-----eEEEEecCCCc
Q 004683 455 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKK 524 (737)
Q Consensus 455 ~V~~v~~s---~~~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~~ 524 (737)
....++++ +..|+.+. .+.|+.+|..++...... ........++|++++ .|+++...+ .+..++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 34567776 24566665 578999998866544433 344567899999999 677666521 34444433 22
Q ss_pred EE--EEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 525 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 525 ~~--~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
.. ..+.. ......++++| +|..+++-..++.|..+|..++... .+...... .....++|+|+|++|++
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 21 22221 23456788999 7777777667889999999864321 11111111 35779999999997666
Q ss_pred E--ecCcEEEEeCCC--Cce--eEEecCC-C------------CCCCeE-EEEEc--------cCCCEEEEEecCCeEEE
Q 004683 602 I--HEGQIDVYEAPT--LNH--TSQLVPD-K------------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV 653 (737)
Q Consensus 602 ~--~dg~I~iwd~~~--~~~--~~~~~~~-~------------h~~~v~-~~~~s--------p~~~~l~sgs~dg~I~v 653 (737)
+ ..+.|..++... +.. +..+.+. . .-.... .++.. ++|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 668899987653 221 1222111 0 011223 45553 34566666666788988
Q ss_pred EEcCCCeeEEEEecccccCCCCccC-------ceeeEEEEEccCCCCEEEEEECCCcEEEEecC
Q 004683 654 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 710 (737)
Q Consensus 654 wd~~~~~~~~~~~~~~~~~~g~~~~-------~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~ 710 (737)
++ .+|..............|..++ --.+..+++.|.++.++++-..++.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443332100000010000 11366899998446666666667788888764
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.98 E-value=0.0019 Score=66.41 Aligned_cols=225 Identities=8% Similarity=-0.022 Sum_probs=135.9
Q ss_pred EEEEEeCCeEEEEECCCCc--EEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEE-EEEcCCCcceEEE
Q 004683 465 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 539 (737)
Q Consensus 465 ~l~s~sdg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~-~~l~~~~~~v~~l 539 (737)
+|+.+....|+..++.... ....+.+ ...+..++|++.+ .+.+-...+.|..+++.++... ..+...-.....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 3445556788888887653 1112211 2245688999865 4445556778999998765321 1222222356788
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE---ecCcEEEEeCCCC
Q 004683 540 AYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL 615 (737)
Q Consensus 540 ~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~---~dg~I~iwd~~~~ 615 (737)
++.+.+. ..++-...+.|.++++..... .. +..... .....+++.|.+..|+.+ ..+.|..+++. |
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~---l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G 154 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLR---KV---LFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G 154 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcE---EE---EEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence 9997544 445555678899999876221 11 111111 467899999976666654 25789999885 3
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
.....+... .-.....++++|++..|+.+ +..+.|..+++.......... + ....+.+++... +.+
T Consensus 155 ~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~l 221 (318)
T 3sov_A 155 SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DIL 221 (318)
T ss_dssp CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEE
T ss_pred CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEE
Confidence 333333221 24567899999977666654 456889999987543322221 0 111234666644 456
Q ss_pred EEEEECCCcEEEEecCCCc
Q 004683 695 IALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 695 las~s~Dg~V~iWd~~~~~ 713 (737)
+.+-...+.|..++..+++
T Consensus 222 ywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEECCCCC
Confidence 6666677889999987765
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.97 E-value=0.0016 Score=75.62 Aligned_cols=238 Identities=7% Similarity=0.012 Sum_probs=126.6
Q ss_pred CeEEEEEe-cCCCEEEEEEC-CC----cEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004683 390 RVVRLIYS-HSGDFLVALTQ-TA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 462 (737)
Q Consensus 390 ~V~~v~fs-pdg~~L~s~s~-dg----~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s- 462 (737)
.+...+|| |||++||.+.. +| +|+++|+.++. +.+... -......++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~--------------------~~l~~~----~~~~~~~~~Wsp 230 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS--------------------QTIADK----VSGTNGEIVWGP 230 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT--------------------CCCCCC----EEEECSCCEECS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC--------------------EeCCcc----ccCceeeEEEec
Confidence 68889999 99998886654 22 47777766430 111000 00112356788
Q ss_pred -CCEEEEEe-C-----CeEEEEECCCCcE--EEEec-CCCCCeEEEEEcCCC-eEEEEEC---CCeEEEEecCCC--cE-
Q 004683 463 -GSHLFSAS-G-----GKISIFSLETFQT--LATFA-NPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTK--KT- 525 (737)
Q Consensus 463 -~~~l~s~s-d-----g~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~s~~~-~l~sgs~---dg~I~vwd~~~~--~~- 525 (737)
|+.|+... + ..|+++++.++.. ...+. ........+.|+||| .|+..+. ...|+++|+.++ ..
T Consensus 231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 66666665 4 2688889887642 33333 223346678999999 6665542 336888998875 23
Q ss_pred EEEE-cCCCcceEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeecee-eeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 526 KAKL-KGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 526 ~~~l-~~~~~~v~~l~~sp~g~~l~s~s~d----g~I~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
+..+ ........++.|+..+.+++....+ ..|..+|+.+.. .... + +..... ..+..+.+ .+..|
T Consensus 311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~--~~~~~l--i~~~~~---~~l~~~~~--~~~~l 381 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS--DWSHVL--VDHSED---VFMESIAV--RSNYL 381 (751)
T ss_dssp EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT--CCCCEE--ECCCSS---EEEEEEEE--CSSEE
T ss_pred eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc--cceeeE--ECCCCC---cEEEEEEE--ECCEE
Confidence 1333 3334455666655444444444433 256667765421 0111 1 111111 23444544 45566
Q ss_pred EE-E-ecC--cEEEEeC-------CCCceeEEecCCCCCCCeEEEEE----ccCCC-EEEEEecC---CeEEEEEcCCCe
Q 004683 600 LS-I-HEG--QIDVYEA-------PTLNHTSQLVPDKMDLPITYATY----SCDGK-CIYVSCKS---GHVKVFDTSTLE 660 (737)
Q Consensus 600 ~~-~-~dg--~I~iwd~-------~~~~~~~~~~~~~h~~~v~~~~~----sp~~~-~l~sgs~d---g~I~vwd~~~~~ 660 (737)
+. . .++ .|+++|+ ..++....+.... ...+..+.+ ++++. ++++.+.. +.++.+|+.+++
T Consensus 382 v~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEE-PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCC-SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEeCCEEEEEEEecccccccccCCccceEECCCC-ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 55 3 566 4667775 3443133443211 223334433 34554 44444433 578888888876
Q ss_pred e
Q 004683 661 L 661 (737)
Q Consensus 661 ~ 661 (737)
.
T Consensus 461 ~ 461 (751)
T 2xe4_A 461 R 461 (751)
T ss_dssp E
T ss_pred E
Confidence 4
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.89 E-value=0.0071 Score=61.90 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=126.0
Q ss_pred EEEEEe-CCeEEEEECCCCcEEEEecCCCCCeEEEEEcC----CC-e--EEEEE-C---CCeEEEEec--CCCcEEEEEc
Q 004683 465 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP----QD-L--FAFGF-D---DSSILVHCP--CTKKTKAKLK 530 (737)
Q Consensus 465 ~l~s~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~----~~-~--l~sgs-~---dg~I~vwd~--~~~~~~~~l~ 530 (737)
.++... .+-+.+||+ +|+.++.+.. +.+..+...| .| . ++.++ . +++|.+|++ .++. +..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 333334 789999999 7999988864 4566666655 22 1 33333 3 578999966 4443 44442
Q ss_pred C------CC-cceEEEEE--eCC-CC-EEEEEeCCCcEEEEeCCCC--ceeeceeeeecccCCCCCCCCeEEEEEecCCC
Q 004683 531 G------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 597 (737)
Q Consensus 531 ~------~~-~~v~~l~~--sp~-g~-~l~s~s~dg~I~lwdl~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 597 (737)
. .. ..+..+++ +|. ++ ++++...+|.+..|++... .....+.++++..+ +.+..++..+...
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-----sq~EgcvvDd~~g 192 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-----SQTEGMAADDEYG 192 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----SCEEEEEEETTTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----CCcceEEEcCCCC
Confidence 2 11 44556677 674 44 6888888999999988421 11334555655554 5788999999888
Q ss_pred EEEEE-ecCcEEEEeCC-----CCceeEEecCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCeEEEEEcC-CCeeEEEEe
Q 004683 598 HLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATY--SCDGK-CIYVSC-KSGHVKVFDTS-TLELRCQIN 666 (737)
Q Consensus 598 ~l~~~-~dg~I~iwd~~-----~~~~~~~~~~~~h~~~v~~~~~--sp~~~-~l~sgs-~dg~I~vwd~~-~~~~~~~~~ 666 (737)
.|+++ .+..|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .+++..|||.. +.+.+..+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 88887 55567777755 3455555533222347888888 45665 677666 56899999997 777777775
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.89 E-value=0.014 Score=67.51 Aligned_cols=203 Identities=8% Similarity=-0.076 Sum_probs=125.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCeEEEEECCCC----cEEEEecCCCCCeEEEEEcCCC-eE-EEEECCCeEEEEecC
Q 004683 452 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPC 521 (737)
Q Consensus 452 h~~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~l-~sgs~dg~I~vwd~~ 521 (737)
....+..++|. ++.|+.+. .+.|+.+++... .....+.........+++.+.+ .| ++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567788998 55555555 688999998752 2233333334456688998877 44 455567899999988
Q ss_pred CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 522 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 522 ~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-d-g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.......+...-.....|+++|.+..|+.+.. . +.|...++..... ..+..... .....|++++.+..|
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------~~lv~~~l---~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL 572 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------EEEEeCCC---CCceEEEEecCCCeE
Confidence 65544444334456889999997666665553 2 6788888876321 11222221 468899999887777
Q ss_pred EEE--ecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEEcCCCeeEEEE
Q 004683 600 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 600 ~~~--~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
+.+ ..+.|..+++........+.....-....++++. +..|+ +-...+.|...+..+|+.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 764 5678999998644333333221122345566663 33454 4455688988888777655554
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.013 Score=60.01 Aligned_cols=200 Identities=8% Similarity=-0.067 Sum_probs=126.3
Q ss_pred CeEEEEEe--CCEEEEEe--CCeEEEEECCCCcE-EEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEE
Q 004683 455 SISCFALR--GSHLFSAS--GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
.+.+++|. ++.|+.+. .+.|..++...+.. ...+...-.....+++.+.+ .+++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 35578888 55555554 68899999876532 12222222345578888755 44555567799999987544333
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 603 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~--dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~ 603 (737)
.+.........++++|.+..++.+.. .+.|...++..... .. +..... .....++++|++..|+.+ .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~---~~~~~l---~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FI---IINSEI---YWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EE---EECSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EE---EEECCC---CCccEEEEeccCCEEEEEECC
Confidence 33344456789999997666666553 57888888875211 11 111111 467899999987777764 6
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
.+.|..+|+... ....+.. .......++++. .+.++.+-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~-~~~~~~~-~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGT-NRQAVVK-GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSC-SCEEEEC-SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCC-ceEEEec-CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 688999998643 3333322 124556778875 33455555567899999998887665554
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.80 E-value=0.015 Score=67.30 Aligned_cols=229 Identities=10% Similarity=-0.027 Sum_probs=140.1
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEECCCeEEEEecCCC----cEEEEEcCCCcce
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 536 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~-l~sgs~dg~I~vwd~~~~----~~~~~l~~~~~~v 536 (737)
..+|+.+....|+..++.......... ....+..++|++.+ . +++-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 345555556778888887655444443 34567789999865 4 445555678999998753 2233343334567
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e-cCcEEEEeC
Q 004683 537 TCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 612 (737)
Q Consensus 537 ~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~-dg~I~iwd~ 612 (737)
..+++.+.++.|+ +-...+.|.+.++..... ..+..... .....|+++|.+..|+.+ . .+.|.+.++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------EEEEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 7899998775554 445578899999986321 11221111 468899999986666654 3 368999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 691 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 691 (737)
. |.....+... .......|++++.+..|+.+ ...+.|...++........+... ..--++.+++...
T Consensus 545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 5 4444444321 24678999999877766655 44578999998765444333211 1111234666644
Q ss_pred CCEEEEEECCCcEEEEecCCCc
Q 004683 692 PNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 692 ~~~las~s~Dg~V~iWd~~~~~ 713 (737)
+.++++-...+.|...+..+++
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCc
Confidence 3555555566788877766664
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.011 Score=60.53 Aligned_cols=185 Identities=10% Similarity=0.075 Sum_probs=115.7
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCC----CC---EEEEEe-C--CCcEEEEeCCCCceeeceeee
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LN---VLVSSG-A--DAQLCVWDAVGWKKLCSKFLH 574 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~----g~---~l~s~s-~--dg~I~lwdl~~~~~~~~~~~~ 574 (737)
.++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++.... ..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----~~l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----GTLQ 114 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT----CCEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC----Ccee
Confidence 6666677889999999 7888888863 56777777663 22 223333 3 5789999774211 1122
Q ss_pred ec-----c--cCCCCCCCCeEEEEE--ecC-CC-EEEE-EecCcEEEEeCC-------CCceeEEecCCCCCCCeEEEEE
Q 004683 575 SF-----Q--TGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATY 635 (737)
Q Consensus 575 ~~-----~--~~~~~~~~~v~~l~~--sp~-g~-~l~~-~~dg~I~iwd~~-------~~~~~~~~~~~~h~~~v~~~~~ 635 (737)
.+ + ... ..+..+|+ +|. ++ ++++ ..+|.+..|++. +.+.++++.. .+.+-.+..
T Consensus 115 ~i~~~~~pv~t~~----~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcvv 187 (355)
T 3amr_A 115 SMTDPDHPIATAI----NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAA 187 (355)
T ss_dssp ECSCTTSCEECCC----SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEE
T ss_pred eccccccCcCCCC----CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEE
Confidence 12 1 110 34666777 774 44 4555 478999999882 3456777765 457888999
Q ss_pred ccCCCEEEEEecCCeEEEEEcC-----CCeeEEEEecccccCCCCccCceeeEEEEEccCCCC-EEEEEE-CCCcEEEEe
Q 004683 636 SCDGKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIE 708 (737)
Q Consensus 636 sp~~~~l~sgs~dg~I~vwd~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~V~iWd 708 (737)
.+....|+.+-++.-|..++.. +++.+..+.. ++-...+.-+.+...+ ++. +|++++ .+++..+||
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEE
Confidence 9999999999999777777754 3445544321 2222234423333355 444 555554 677999999
Q ss_pred cC
Q 004683 709 PL 710 (737)
Q Consensus 709 ~~ 710 (737)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 96
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.76 E-value=0.0088 Score=64.33 Aligned_cols=242 Identities=10% Similarity=0.020 Sum_probs=131.4
Q ss_pred CCeEEEEEecC--CCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004683 389 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 464 (737)
Q Consensus 389 ~~V~~v~fspd--g~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 464 (737)
.....++|+|+ +..|..+...+.|+.++.. ++.+.... ........++++ |+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~---------------------~g~v~~~~---~~~~~P~giavd~dG~ 194 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV---------------------NQYVDIKT---TNIGQCADVNFTLNGD 194 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETT---------------------TTEEEEEC---CCCSCEEEEEECTTCC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECC---------------------CCEEEEee---cCCCCccEEEECCCCC
Confidence 34678899984 3445555444666665543 33333221 234557889999 67
Q ss_pred EEEEEeCC-----eEEEEECCCCcE-EEEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCCcEEEEE-cC-CCc
Q 004683 465 HLFSASGG-----KISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-KG-HQN 534 (737)
Q Consensus 465 ~l~s~sdg-----~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l-~~-~~~ 534 (737)
++++...+ .+...+...+.. ...+. .......++++| ++ .+++-..++.|+.+|..++.....+ .. ...
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 44444322 233333322111 01111 122345678999 55 4445556778999999877663332 21 122
Q ss_pred ceEEEEEeCCCCEEEEE-eCCCcEEEEeCCC--Cceeeceeeeec--ccCCCC------CCCCeEEEEE---------ec
Q 004683 535 RITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF--QTGLVP------ETTIVNHIQF---------HP 594 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~--~~~~~~~~~~~~--~~~~~~------~~~~v~~l~~---------sp 594 (737)
....++|+|+|+.|..+ ...+.|+.++... +.......+... ..+... .-.....+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 23469999999955544 4567899988653 211000001000 000000 0134677999 67
Q ss_pred CCCEEEE-EecCcEEEEeCCCCceeEEecCCCC----------------CCCeEEEEEc-cCCCEEEEEecCCeEEEEEc
Q 004683 595 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFDT 656 (737)
Q Consensus 595 ~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h----------------~~~v~~~~~s-p~~~~l~sgs~dg~I~vwd~ 656 (737)
+|.+.++ ...+.|+.++. +|.. .++.+... -.....++++ ++|.++++-..++.|+.+++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 7766666 36788999985 5543 33332110 1346788888 56666666666677877765
Q ss_pred C
Q 004683 657 S 657 (737)
Q Consensus 657 ~ 657 (737)
+
T Consensus 432 e 432 (433)
T 4hw6_A 432 E 432 (433)
T ss_dssp C
T ss_pred C
Confidence 4
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.012 Score=63.18 Aligned_cols=240 Identities=8% Similarity=-0.028 Sum_probs=131.0
Q ss_pred CeEEEEEec-CCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004683 390 RVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 466 (737)
Q Consensus 390 ~V~~v~fsp-dg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 466 (737)
....++++| ++..|..+...+.|+.+|.. ++.+.... ........++|+ |++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~---------------------~~~v~~~~---~~~~~P~~ia~d~~G~~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE---------------------KEYVSTVY---SGLSKVRTICWTHEADSM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT---------------------TTEEEEEE---CCCSCEEEEEECTTSSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC---------------------CCEEEEEe---cCCCCcceEEEeCCCCEE
Confidence 457889998 45556666555566555544 33222211 134557789999 7755
Q ss_pred EEEe--CC----eEEEEECCCCcEE--EEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCCcEEEEEcC-CCcc
Q 004683 467 FSAS--GG----KISIFSLETFQTL--ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNR 535 (737)
Q Consensus 467 ~s~s--dg----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-~~~~ 535 (737)
+.+. ++ .+...+. .+... ..+.. ......++++| ++ .+++-..++.|..++..++........ ....
T Consensus 194 yvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp EEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred EEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 5554 22 2333443 23221 22221 22345778999 56 555555678999999987654222221 2245
Q ss_pred eEEEEEeCCCCEEE-EEeCCCcEEEEeCCCC--ceeeceeeeec--ccCCCC------CCCCeE-EEEEe--------cC
Q 004683 536 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGW--KKLCSKFLHSF--QTGLVP------ETTIVN-HIQFH--------PD 595 (737)
Q Consensus 536 v~~l~~sp~g~~l~-s~s~dg~I~lwdl~~~--~~~~~~~~~~~--~~~~~~------~~~~v~-~l~~s--------p~ 595 (737)
...++|+|+|++++ +-...+.|..++.... .......+... ..+... .-.... .++.. ++
T Consensus 272 P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~ 351 (430)
T 3tc9_A 272 EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDE 351 (430)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCC
T ss_pred ceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCC
Confidence 67899999999554 4456778999876631 11000011100 000000 001233 45554 34
Q ss_pred CCEEEE-EecCcEEEEeCCCCceeEEecCCC----------------CCCCeEEEEEccC-CCEEEEEecCCeEEEEEcC
Q 004683 596 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTS 657 (737)
Q Consensus 596 g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~----------------h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~ 657 (737)
|...++ ...+.|+.++. +|... ++.+.. .-.....++++|+ +.++++-..++.|+.++++
T Consensus 352 g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 352 YDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 555555 36678999984 56433 322210 0125788999994 6555565566788877754
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.73 E-value=0.1 Score=58.61 Aligned_cols=331 Identities=11% Similarity=-0.009 Sum_probs=168.6
Q ss_pred ccccccCCCCCEEEEE-ecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEeeccC
Q 004683 342 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQS 419 (737)
Q Consensus 342 ~~~~~~spdg~~la~~-s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s-~dg~i~iWd~~~ 419 (737)
...+++.+.+..+..+ ...+.|..+++++. .....+ +.. --.....+++.+.+..|+.+. ..+.|.+.+...
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v-~~~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---ESVQNV-VVS--GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCC---CceEEE-EeC--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 3445567765555544 44567777777642 111222 222 135688999999766566554 467888877653
Q ss_pred CcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCeEEEEECCCCcEEEEecCCCCC
Q 004683 420 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPI 494 (737)
Q Consensus 420 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~ 494 (737)
... ..+ .. ..-.....+++. +..|+.+. .+.|...+++...........-..
T Consensus 116 ~~~------~~l------------~~-----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 116 SLR------KVL------------FW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp CSC------EEE------------EC-----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred CCE------EEE------------Ee-----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 211 000 00 122334567776 45554444 357777777633333333333446
Q ss_pred eEEEEEcCCC-eEEEE-ECCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec--
Q 004683 495 ATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-- 570 (737)
Q Consensus 495 v~~~~~s~~~-~l~sg-s~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~-- 570 (737)
...+++++++ .|+.+ ...+.|..+|+..........+.......+++..+ ...++-...+.|...|..+++....
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 7899999876 55544 45668999998754332222211222346666655 3444444567888888876532110
Q ss_pred ----ee--eeec-----ccCCCC---CCCCeEEEEE-----------ecCC---------------CEEEEEecCcEEEE
Q 004683 571 ----KF--LHSF-----QTGLVP---ETTIVNHIQF-----------HPDQ---------------IHLLSIHEGQIDVY 610 (737)
Q Consensus 571 ----~~--~~~~-----~~~~~~---~~~~v~~l~~-----------sp~g---------------~~l~~~~dg~I~iw 610 (737)
.+ +... +.+..+ ..+....+++ .|.| .+|+.+..+.|+..
T Consensus 252 ~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i 331 (619)
T 3s94_A 252 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI 331 (619)
T ss_dssp SCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEE
T ss_pred cCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEE
Confidence 00 0000 000000 0001111111 2221 24455666778877
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEcc
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 689 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 689 (737)
++..........+-..-..+.+++|.+.+..|+ +-...+.|+.++.........+.. + - ..+..+++.+
T Consensus 332 ~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~--~~p~GlAvD~ 401 (619)
T 3s94_A 332 SLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--I--AHPDGIAVDW 401 (619)
T ss_dssp ESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--C--SCCCEEEEET
T ss_pred ecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--C--CCcCceEEec
Confidence 876543211111111245678899998655555 444578899999876543333221 1 1 1123666665
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 004683 690 LEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 690 ~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
..++++.+-+..+.|.+.++...
T Consensus 402 ~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 402 VARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCcEEEEeCCCCcEEEEeCCCC
Confidence 34556666666677888777543
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.67 E-value=0.15 Score=61.51 Aligned_cols=327 Identities=10% Similarity=0.004 Sum_probs=177.0
Q ss_pred CCEEEEEec-CCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEe--cCCCEEEEEECCCcEEEeeccC--Ccc---
Q 004683 351 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQS--NKQ--- 422 (737)
Q Consensus 351 g~~la~~s~-dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fs--pdg~~L~s~s~dg~i~iWd~~~--~~~--- 422 (737)
++++|.|.. |++++|+++.. -.......+++ .....++.+. ....+|..|-.||.+.-+.+.. +..
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 578999996 99999999974 22222223433 2233444433 3446889999999987666543 111
Q ss_pred ---cccccceeee----------------e-EEeecCCCeeeeeccCCCCCCCe-EEEEEe----CCEEEEEeCCeEEEE
Q 004683 423 ---SLEEENVNME----------------S-QLYQPSSKLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISIF 477 (737)
Q Consensus 423 ---~~g~~~~~~~----------------~-~l~~~~~~~~~~~~~~~~h~~~V-~~v~~s----~~~l~s~sdg~i~vw 477 (737)
.-|.....+. + .++. ..+.+...-. ....+ ....|+ .+-++..+++.++|.
T Consensus 645 r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~ 720 (1158)
T 3ei3_A 645 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIG 720 (1158)
T ss_dssp EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEE
T ss_pred eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEE
Confidence 1111111110 0 0111 1111111100 11122 234455 345555556678888
Q ss_pred ECCCCc--EEEEecCCCCCeEEEEEcCCC-eEEEEEC-------------------------------------------
Q 004683 478 SLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFD------------------------------------------- 511 (737)
Q Consensus 478 d~~~~~--~~~~~~~~~~~v~~~~~s~~~-~l~sgs~------------------------------------------- 511 (737)
.+.+.. .++++. -...+..++++|+. .++.+..
T Consensus 721 ~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1158)
T 3ei3_A 721 TIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS 799 (1158)
T ss_dssp EECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------
T ss_pred EecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhh
Confidence 775432 222332 23466778888876 4333221
Q ss_pred ------CCeEEEEecCCCcEEEEEcC-CCcceEEEEE---eC-CCCEEEEEe----------CCCcEEEEeCCCCceeec
Q 004683 512 ------DSSILVHCPCTKKTKAKLKG-HQNRITCLAY---SL-SLNVLVSSG----------ADAQLCVWDAVGWKKLCS 570 (737)
Q Consensus 512 ------dg~I~vwd~~~~~~~~~l~~-~~~~v~~l~~---sp-~g~~l~s~s----------~dg~I~lwdl~~~~~~~~ 570 (737)
-+.|++.|..+.+.+..+.- ....+.+++. .. ...++++|+ ..|.|.+|++...+.
T Consensus 800 ~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL--- 876 (1158)
T 3ei3_A 800 FGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL--- 876 (1158)
T ss_dssp CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE---
T ss_pred cCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE---
Confidence 12467777777776655532 2234455443 22 246888876 347899999874321
Q ss_pred eeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 004683 571 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
+.+..... . ++|++++--. | +|+++...+|++|++...+.+. .... +-..|..+.....++++++|..-..
T Consensus 877 ~lv~~~~v--~---g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~~S 947 (1158)
T 3ei3_A 877 QTVAEKEV--K---GAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLMRS 947 (1158)
T ss_dssp EEEEEEEE--S---SCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESSBC
T ss_pred EEEEEEEc--C---CcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhhhe
Confidence 22221111 1 6788877543 4 6777778999999997655433 1110 1112333334345788888887766
Q ss_pred EEEEE--cCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 651 VKVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 651 I~vwd--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
|.++. ...++....-. .-.+.+++++.+-. + ..++.+..+|.+.+.....
T Consensus 948 v~~~~y~~~~~~L~~~a~---------D~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 948 VLLLAYKPMEGNFEEIAR---------DFNPNWMSAVEILD-D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEEETTTTEEEEEEE---------CCSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEECT
T ss_pred EEEEEEEcCCCeEEEEEe---------ecccccEEEEEEEc-c-CcEEEEcCCCcEEEEecCC
Confidence 76654 44444333221 12345566888765 3 5788899999999987754
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.053 Score=61.12 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=142.3
Q ss_pred CEEEEEeCCeEEEEECCCCcEEEEec-CCCCCeEEEEEcCCC-eEE-EEECCCeEEEEecCCCcEEEEEcCCCcceEEEE
Q 004683 464 SHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 540 (737)
Q Consensus 464 ~~l~s~sdg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~ 540 (737)
.+|+.+..+.|+..++.+......+. ..-..+..++|++.+ .|+ +-..++.|..+++........+.........++
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 34555567889999998765433332 223457799999876 544 555678999999876544444443334577899
Q ss_pred EeCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE---ecCcEEEEeCCCCc
Q 004683 541 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLN 616 (737)
Q Consensus 541 ~sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~---~dg~I~iwd~~~~~ 616 (737)
+.+.+..| ++-...+.|.+.++..... .. +..... .....+++.|....|+.+ ..+.|...++....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~---~~---l~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHR---QV---LVWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTC---EE---EECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcE---EE---EEeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 98765555 4445567899999876321 11 111111 467899999966566553 25688888885443
Q ss_pred eeEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEE
Q 004683 617 HTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 695 (737)
Q Consensus 617 ~~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 695 (737)
...+.. .......++++++++.|+.+ ...+.|...++..... ..+... .-.+.++++.. +.++
T Consensus 158 -~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~----------l~~P~glav~~--~~ly 221 (628)
T 4a0p_A 158 -RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD----------LPHPFGLTQYQ--DYIY 221 (628)
T ss_dssp -CEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC----------CSCEEEEEEET--TEEE
T ss_pred -eEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc----------CCCceEEEEEC--CEEE
Confidence 333322 25678899999977766655 4568899999876544 232210 11234666654 4556
Q ss_pred EEEECCCcEEEEecCCCc
Q 004683 696 ALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 696 as~s~Dg~V~iWd~~~~~ 713 (737)
.+-...+.|...|..+++
T Consensus 222 ~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EecCCCCEEEEEECCCCC
Confidence 665567888888877664
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.64 E-value=0.00031 Score=80.74 Aligned_cols=202 Identities=8% Similarity=-0.053 Sum_probs=119.0
Q ss_pred CCeEEEEEe--CCEEEEEe--CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCCC
Q 004683 454 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 523 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~ 523 (737)
..+..++|. ++.|+.+. .+.|+.+++.+ ......+.........+++.+.+ .+++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345578888 56666665 58899999875 22222221112234567887555 4445456778999998765
Q ss_pred cEEEEEcCCCcceEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 524 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 524 ~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-d-g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
.....+.........++++|.+..|+.+.. . +.|..+++..... .. +..... .....|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~---l~~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CE---ESCSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eE---EEeCCC---CCccEEEEeccCCEEEE
Confidence 443333333345678899996655554443 2 6788887765211 11 111111 35678999998766665
Q ss_pred E--ecCcEEEEeCCCCceeEEecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEe
Q 004683 602 I--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 666 (737)
Q Consensus 602 ~--~dg~I~iwd~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 666 (737)
+ ..+.|..+|+.... ...+.. ........++++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 3 66789999986433 333321 111233445666443 444455566899999998888776664
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.04 Score=59.59 Aligned_cols=252 Identities=10% Similarity=-0.070 Sum_probs=145.9
Q ss_pred CeEEEEEe---CCEEEEEe--CCeEEEEECCCCcEEEEecCC---CCCeEEEEE-------cCCC-eEEEEECCC-----
Q 004683 455 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 513 (737)
Q Consensus 455 ~V~~v~~s---~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~-~l~sgs~dg----- 513 (737)
....|+|+ +..|+.+. .+.|++.|..++......... ......++| ++++ .++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45678887 24455555 367999999877665554422 235789999 9999 677766554
Q ss_pred --eEEEEecCC-CcEE-----EEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCC-------CCce-e---e----
Q 004683 514 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV-------GWKK-L---C---- 569 (737)
Q Consensus 514 --~I~vwd~~~-~~~~-----~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~-------~~~~-~---~---- 569 (737)
.|.+++... +... ..+... .....++++| ++.++++-..++.|..+|+. ++.. . .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366676443 2211 122211 2345778899 45556666677889999987 4332 0 0
Q ss_pred -ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCC--CCce--eEEecCC----C---------CCCC
Q 004683 570 -SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPD----K---------MDLP 629 (737)
Q Consensus 570 -~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~--~~~~--~~~~~~~----~---------h~~~ 629 (737)
...+..+... .....++|+|+|+.|+.+ ....|+.++.. .+.. ...+.+. + .-..
T Consensus 299 ~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 299 TFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 0011112111 456899999999966654 66789986653 3321 0122110 0 0123
Q ss_pred eE-EEEEc-------cCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc-------CCCCccC-------ceeeEEEEE
Q 004683 630 IT-YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------QPGTISL-------ELYPLVIAA 687 (737)
Q Consensus 630 v~-~~~~s-------p~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-------~~g~~~~-------~v~~~~v~~ 687 (737)
.. .++.. ++|.+.++-..+++|+.++ .+|. +..+.+.... ..|..++ --.+..+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 44 45554 4667777777788999998 5664 4444332110 0011111 123668999
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCce
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~~ 714 (737)
.+.++.++++=+.+..|+.+++....+
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 983266777767778999999976553
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.31 Score=58.84 Aligned_cols=306 Identities=11% Similarity=-0.008 Sum_probs=162.4
Q ss_pred CCEEEEEecCCeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecC------CCEEEEEEC-CCcEEEeeccCCccc
Q 004683 351 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQS 423 (737)
Q Consensus 351 g~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspd------g~~L~s~s~-dg~i~iWd~~~~~~~ 423 (737)
+..++.++ .+.+..+.++.+. -.......+ ...|.|+++.|. +++++.|.. |++++|+++.+.+.
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~-L~~~~~~~l-----~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~- 594 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQE-LRQISHTEM-----EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL- 594 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTE-EEEEEEEEC-----SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-
T ss_pred CCEEEEEE-CCEEEEEEeeCCc-eeeecccCC-----CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-
Confidence 34555554 5667666665311 011122222 457999999864 469999997 99999999874221
Q ss_pred ccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCeEEEEEC--CCCcEEEE---ecCCCC
Q 004683 424 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT---FANPPP 493 (737)
Q Consensus 424 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~i~vwd~--~~~~~~~~---~~~~~~ 493 (737)
. . .+.+ +......++.+. ..+|..|- ||.+..+.+ .+|..... +-| ..
T Consensus 595 ----~-------~-------~~~L---~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~ 652 (1158)
T 3ei3_A 595 ----L-------H-------KEML---GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQ 652 (1158)
T ss_dssp ----E-------E-------EEEC---CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SS
T ss_pred ----E-------E-------EEEC---CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CC
Confidence 0 0 0000 111233444443 33566666 888765544 45544322 223 33
Q ss_pred CeEEEEEcCCC--eEEEEECCCeEEEEecCCCcEEE-EEcCCCcce-EEEEEeCC--CCEEEEEeCCCcEEEEeCCCCce
Q 004683 494 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKK 567 (737)
Q Consensus 494 ~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~~~~~~-~l~~~~~~v-~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~ 567 (737)
++.-..+...+ .+++++ +....+|.-+ ++... .+. -..+ ....|+.. ..-++..+ ++.+++..+....
T Consensus 653 pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~- 726 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ- 726 (1158)
T ss_dssp CCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-
T ss_pred ceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC-
Confidence 45444454444 444444 4444444433 33221 121 1223 23345432 23355444 5669998876532
Q ss_pred eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-E--ec----------------------------------------
Q 004683 568 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HE---------------------------------------- 604 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~--~d---------------------------------------- 604 (737)
...+++++-+ ..+..++++|+.+.+++ . .+
T Consensus 727 --~~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1158)
T 3ei3_A 727 --KLHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS 799 (1158)
T ss_dssp --SEEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------
T ss_pred --CeeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhh
Confidence 2334444444 46888999988776554 2 10
Q ss_pred -------CcEEEEeCCCCceeEEecCCCCCCCeEEEEE---cc-CCCEEEEEe----------cCCeEEEEEcCCCeeEE
Q 004683 605 -------GQIDVYEAPTLNHTSQLVPDKMDLPITYATY---SC-DGKCIYVSC----------KSGHVKVFDTSTLELRC 663 (737)
Q Consensus 605 -------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~---sp-~~~~l~sgs----------~dg~I~vwd~~~~~~~~ 663 (737)
+.|++.|-.+.+.+..+.-.. ...+.+++. .. ...++++|+ ..|.|++|++..+++..
T Consensus 800 ~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l 878 (1158)
T 3ei3_A 800 FGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT 878 (1158)
T ss_dssp CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE
T ss_pred cCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE
Confidence 236778877777776665432 444555543 22 246888876 24889999997554333
Q ss_pred EEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 664 QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 664 ~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
..... ..+.++ +++-- +|.++|+. ..+|++|++...+
T Consensus 879 v~~~~-------v~g~v~--al~~~--~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 879 VAEKE-------VKGAVY--SMVEF--NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEE-------ESSCEE--EEEEE--TTEEEEEE--TTEEEEEEECTTS
T ss_pred EEEEE-------cCCcCE--EEeee--CCEEEEEc--CCEEEEEECCCCc
Confidence 22111 023344 55433 35444443 4789999997654
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.076 Score=57.43 Aligned_cols=250 Identities=8% Similarity=-0.066 Sum_probs=134.9
Q ss_pred CeEEEEEec-CCCEEEEEECC-CcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCC-CCCCCeEEEEE-----
Q 004683 390 RVVRLIYSH-SGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL----- 461 (737)
Q Consensus 390 ~V~~v~fsp-dg~~L~s~s~d-g~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~-~h~~~V~~v~~----- 461 (737)
....++|+| ++..|+.+... +.|++.|. +++.+....... ........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~---------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL---------------------KNRMLSSPLNINTIPTNRIRSIAFNKKIE 198 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET---------------------TTTEEEEEECCTTSSCSBEEEEEECCCBT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC---------------------CCCEEEEEEccCccccCCCcEEEEeeccc
Confidence 467899998 35555555443 44544443 333333222111 12345888999
Q ss_pred --e--CCEEEEEe-CC-------eEEEEECCC-CcEE-----EEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecC
Q 004683 462 --R--GSHLFSAS-GG-------KISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 521 (737)
Q Consensus 462 --s--~~~l~s~s-dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~ 521 (737)
+ |++|+++. .+ .|.+.+... +... ..+... .....++++|++ ++++-..++.|..+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 7 77677666 32 266665443 2221 222211 123467889965 55566677889999987
Q ss_pred -------CCcE-----------EEE-Ec-CCCcceEEEEEeCCCCEEEEE-eCCCcEEEEeCCC--Cceeeceeeeec--
Q 004683 522 -------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF-- 576 (737)
Q Consensus 522 -------~~~~-----------~~~-l~-~~~~~v~~l~~sp~g~~l~s~-s~dg~I~lwdl~~--~~~~~~~~~~~~-- 576 (737)
++.. ... +. +.......++|+|+|+.|..+ +....|+.+|... +.......+.-.
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 112 21 223456789999999964444 5567888866543 111000001000
Q ss_pred ccCCCC------CCCCeE-EEEEe-------cCCCEEEE-EecCcEEEEeCCCCceeEEecCCC----------------
Q 004683 577 QTGLVP------ETTIVN-HIQFH-------PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------- 625 (737)
Q Consensus 577 ~~~~~~------~~~~v~-~l~~s-------p~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~---------------- 625 (737)
..+... .-.... .++.. ++|.+.++ ..+..|+.++. +|. +.++.+..
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCC
Confidence 001000 002344 45554 45665555 47789999994 564 44443210
Q ss_pred ------CCCCeEEEEEccC-CCEEEEEecCCeEEEEEcCCCeeEE
Q 004683 626 ------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRC 663 (737)
Q Consensus 626 ------h~~~v~~~~~sp~-~~~l~sgs~dg~I~vwd~~~~~~~~ 663 (737)
.-.....++++++ |.+.++=+.+..|+.+++.......
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134678888886 6666666667888888877655443
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.41 E-value=0.092 Score=53.21 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=122.8
Q ss_pred CeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEE-ecC----CCC--CeEEEEE---cCCC-eEEEEE---------
Q 004683 455 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT-FAN----PPP--IATYFIL---LPQD-LFAFGF--------- 510 (737)
Q Consensus 455 ~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~-~~~----~~~--~v~~~~~---s~~~-~l~sgs--------- 510 (737)
.-.+++|. ...+..++ .++|..||...+..... +.+ ... .+..+.| .|++ .+++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34467887 56666666 89999999976654433 222 111 3578999 6888 655443
Q ss_pred ----CCCeEEEEecC---CCcEEEEEc--CC-----------CcceEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCceee
Q 004683 511 ----DDSSILVHCPC---TKKTKAKLK--GH-----------QNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKKLC 569 (737)
Q Consensus 511 ----~dg~I~vwd~~---~~~~~~~l~--~~-----------~~~v~~l~~sp~g~~l~s~s~d-g~I~lwdl~~~~~~~ 569 (737)
.+..|..||+. +++.+.... .. ......++..++|+..++++.. +.|..++...... .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-S 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-E
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-e
Confidence 26789999999 777655443 11 1358899999999999999888 8888777765211 1
Q ss_pred ceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ecCcEEEEeCCCCce--eEEec-CC-CCCCCeEEE-EEccCCCE-E
Q 004683 570 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--TSQLV-PD-KMDLPITYA-TYSCDGKC-I 642 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~dg~I~iwd~~~~~~--~~~~~-~~-~h~~~v~~~-~~sp~~~~-l 642 (737)
...+. .+..... ...+.|+++|+|+.|++. ..|.+..+|+.+... +..-. +. ........+ ..-.+|+. +
T Consensus 173 ~~~~~-~~~~~~~--~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 TFAWE-SGNGGQR--PGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEC-CCCSSSC--CSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeec-CCCcccc--cCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 11111 1111110 346799999999988884 589999999874322 11100 11 012233443 22347777 4
Q ss_pred EEEecCCeEEEEEcCCCe
Q 004683 643 YVSCKSGHVKVFDTSTLE 660 (737)
Q Consensus 643 ~sgs~dg~I~vwd~~~~~ 660 (737)
++.+..+.+.+.+...++
T Consensus 250 V~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 250 VGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEETTEEEEEECSSTTS
T ss_pred EEcCCCCEEEEECCCCcc
Confidence 445556666665555443
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.40 E-value=0.19 Score=56.58 Aligned_cols=198 Identities=8% Similarity=-0.076 Sum_probs=126.9
Q ss_pred CCeEEEEEe--CCEEEEEe--CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eE-EEEECCCeEEEEecCCCcEEE
Q 004683 454 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l-~sgs~dg~I~vwd~~~~~~~~ 527 (737)
..+..++|+ ++.++.+. ++.|..+++........+.........+++.+.+ .| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457789998 55665555 6899999987554444443333446688888766 44 455556799999987654333
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 603 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~--dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~ 603 (737)
.+...-.....++++|....|..... .+.|...++..... .. +...- .....+++++++..|+.+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---~~---l~~~~----~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---TT---LVPNV----GRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE---EECSC----SSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---EE---EECCC----CCcceEEEccccCEEEEEECC
Confidence 33334456789999996556655553 46788888876321 11 11221 568899999988777764 6
Q ss_pred cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 604 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 604 dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
.+.|..+|+..... ..+.. ......++++.. +...++-...+.|...|..+|+....+
T Consensus 187 ~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 67899999865433 33322 234566788764 444445555789999998777654444
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.011 Score=59.96 Aligned_cols=162 Identities=13% Similarity=0.030 Sum_probs=106.3
Q ss_pred CeEEEEEcCCC-eEEEEE-CCCeEEEEecCCCcEEEEEcCC-------CcceEEEEE---eCCCCEEEEEe---------
Q 004683 494 IATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH-------QNRITCLAY---SLSLNVLVSSG--------- 552 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~-------~~~v~~l~~---sp~g~~l~s~s--------- 552 (737)
--.++.|++.. .+..++ ..++|..||...+......-.. ...+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34478998866 666666 7899999999866544332211 113578999 68887777544
Q ss_pred ----CCCcEEEEeCC---CCceeeceeeeecccC------CCCCCCCeEEEEEecCCCEEEE-Eec-CcEEEEeCCCCce
Q 004683 553 ----ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNH 617 (737)
Q Consensus 553 ----~dg~I~lwdl~---~~~~~~~~~~~~~~~~------~~~~~~~v~~l~~sp~g~~l~~-~~d-g~I~iwd~~~~~~ 617 (737)
.+..|..||+. +++......+.....+ ... .....++..++|+..++ +.. +.|..++... +.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~ 170 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KT 170 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CC
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CE
Confidence 26779999999 6544332222211111 010 35789999999998887 566 7788777753 33
Q ss_pred eEEec-C---CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 618 TSQLV-P---DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 618 ~~~~~-~---~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
+..+. . .......+.++++|+|+.|++....|.+..+|+.+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 33221 1 11133467999999999888887799999999884
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.32 E-value=0.055 Score=60.91 Aligned_cols=225 Identities=8% Similarity=-0.026 Sum_probs=130.6
Q ss_pred EEEEeCCeEEEEECCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEE-CCCeEEEEecCCCcE-EEEEcCCCcceEEEEE
Q 004683 466 LFSASGGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT-KAKLKGHQNRITCLAY 541 (737)
Q Consensus 466 l~s~sdg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~l~sgs-~dg~I~vwd~~~~~~-~~~l~~~~~~v~~l~~ 541 (737)
++-+....|+..++.... ...........+..++|++.+ .|+.+. ..+.|..+++..... ...+...-.....+++
T Consensus 12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 444456788888887543 222222334457789999876 555444 467899999875532 2333333356889999
Q ss_pred eCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE---ecCcEEEEeCCCCce
Q 004683 542 SLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNH 617 (737)
Q Consensus 542 sp~g~~l-~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~---~dg~I~iwd~~~~~~ 617 (737)
.+.+..+ ++-...+.|.+.++.+... ..+..... .....+++.|.+..|+.+ ..+.|...++. |..
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~------~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~ 161 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSS 161 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCE------EEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCc
Confidence 9965554 4455678899999986321 11121112 457789999986666553 24678888875 433
Q ss_pred eEEecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 618 TSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 618 ~~~~~~~~h~~~v~~~~~sp~~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
...+... .......++++++++.|+.+ ...+.|...++............ .-.+.++++.. + .++.
T Consensus 162 ~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gi~~~~-~-~ly~ 228 (619)
T 3s94_A 162 RFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS----------LPHPFALTLFE-D-ILYW 228 (619)
T ss_dssp CEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESS-S-EEEE
T ss_pred eEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC----------CCCceEEEEeC-C-EEEE
Confidence 3333221 25568899999976666654 45678999998765433322110 01123566665 3 4555
Q ss_pred EEECCCcEEEEecCCCc
Q 004683 697 LGLTNGRVHVIEPLESE 713 (737)
Q Consensus 697 s~s~Dg~V~iWd~~~~~ 713 (737)
+-...+.|...|..+++
T Consensus 229 td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 229 TDWSTHSILACNKYTGE 245 (619)
T ss_dssp ECTTTCSEEEEESSSCC
T ss_pred ecCCCCEEEEEECCCCc
Confidence 55567788888887764
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.30 E-value=0.00069 Score=77.79 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=128.7
Q ss_pred EEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE-ECCCeEEEEecCC----CcEEEEEcCCCcceEEE
Q 004683 466 LFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCT----KKTKAKLKGHQNRITCL 539 (737)
Q Consensus 466 l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sg-s~dg~I~vwd~~~----~~~~~~l~~~~~~v~~l 539 (737)
++.+..+.|+..++.+......+.. ...+..++|++.+ .|+.+ ...+.|+.+++.+ ......+.........+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred EEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 3344456788888876555433332 2345678999876 55544 4567899999875 22212221112234567
Q ss_pred EEeCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--e-cCcEEEEeCCCC
Q 004683 540 AYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPTL 615 (737)
Q Consensus 540 ~~sp~g-~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~-dg~I~iwd~~~~ 615 (737)
++.+.+ +++++-...+.|.++++..... ..+..... .....++++|.+.+|+.+ . .+.|.++++..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG- 528 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG- 528 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-
Confidence 888544 4445545678899999876321 11111111 346788999976666553 2 37888888753
Q ss_pred ceeEEecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCE
Q 004683 616 NHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 694 (737)
Q Consensus 616 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~-sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 694 (737)
.....+... .......++|+|++..|+ +-+..+.|.++++........+... ....++.++++.. +.+
T Consensus 529 ~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~~~~P~glavd~--~~l 597 (699)
T 1n7d_A 529 VDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE--DKV 597 (699)
T ss_dssp CCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS--------SSCSSCCCCEEET--TEE
T ss_pred CCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC--------CcCCCceEeEEEC--CEE
Confidence 323333211 134567899999765555 4555688999998754433322210 0001123455544 356
Q ss_pred EEEEECCCcEEEEecCCCce
Q 004683 695 IALGLTNGRVHVIEPLESEV 714 (737)
Q Consensus 695 las~s~Dg~V~iWd~~~~~~ 714 (737)
+++....+.|..++..+++.
T Consensus 598 ywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEECSTTTCEEEEETTTEEE
T ss_pred EEEeCCCCeEEEEEccCCCc
Confidence 66666778999998876653
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.29 E-value=0.18 Score=50.64 Aligned_cols=260 Identities=10% Similarity=0.039 Sum_probs=154.2
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCC
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 440 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~ 440 (737)
..|.|.|+... ....+..... -+.-.+|..+.+|.-. ..++.|+|++..
T Consensus 49 ~~VvIiDl~n~---~~~~Rrpi~A-------dsAIMnP~~~ViALra-g~~LQiFnletK-------------------- 97 (365)
T 2xzh_A 49 AQVVIIDMNDP---SNPIRRPISA-------DSAIMNPASKVIALKA-GKTLQIFNIEMK-------------------- 97 (365)
T ss_dssp EEEEEEETTST---TSCEEEECCC-------SEEEECSSSSEEEEEE-TTEEEEEETTTT--------------------
T ss_pred CEEEEEECCCC---CCcccccccc-------ceeeeCCCccEEEEec-CCeEEEechHHh--------------------
Confidence 36788888763 3333322222 3455688888766655 567877776642
Q ss_pred CeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCC-CcEEEEecCCC----CCeEEEEEcCCC--eEEEEE--
Q 004683 441 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPP----PIATYFILLPQD--LFAFGF-- 510 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~--~l~sgs-- 510 (737)
..++... ....|.--.|- .+.|+-..+..|+-|++.. ..+.+.+..|. ..|.....+++. .+++|-
T Consensus 98 -~klks~~---~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 98 -SKMKAHT---MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp -EEEEEEE---CSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred -hhhccee---cCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 2222111 34677777777 8899999999999999974 45666776543 456677778888 444443
Q ss_pred ----CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeC--C-CCEEEEEeC---CCcEEEEeCCCC---c-eeeceeeee-
Q 004683 511 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--S-LNVLVSSGA---DAQLCVWDAVGW---K-KLCSKFLHS- 575 (737)
Q Consensus 511 ----~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp--~-g~~l~s~s~---dg~I~lwdl~~~---~-~~~~~~~~~- 575 (737)
-.|.+.+|..+. +..+.+.||......+.+.- . ...++.+.. .+.+++.++... . ....+...-
T Consensus 174 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~ 252 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 252 (365)
T ss_dssp ETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEEC
T ss_pred cCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceee
Confidence 235788999775 45667787755433322211 1 112333332 257888888442 1 111111211
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
++.... .+-..++..|+....+.. ..-|.|++||++++.++..-.- ....|...+-+....=++.....|.|.--
T Consensus 253 fppea~--~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI--S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 253 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp CCTTCT--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred CCcccc--CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc--CCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 121111 145567888887777766 7899999999999999876654 24455544444443344444467777666
Q ss_pred EcCCCe
Q 004683 655 DTSTLE 660 (737)
Q Consensus 655 d~~~~~ 660 (737)
.++...
T Consensus 329 ~v~~~~ 334 (365)
T 2xzh_A 329 CVEEEN 334 (365)
T ss_dssp EECTTT
T ss_pred EECccc
Confidence 655544
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.23 E-value=0.21 Score=50.15 Aligned_cols=225 Identities=14% Similarity=0.138 Sum_probs=141.4
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCC-CcEEEEEcCCC----cceE
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 537 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~~~----~~v~ 537 (737)
.+.+|.-...++.++|+++...++.+.-.+ .|.-=.|-.+..|+..+ +..|+-|++.. ..+.+.+..|. ..|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 444444457899999999999998887654 55555666555333333 56899999874 45677776553 4677
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC----C-EEEEEe--
Q 004683 538 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ----I-HLLSIH-- 603 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~-------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~-~l~~~~-- 603 (737)
.-..+++.++++..+- .|.+.+|..+.+ ..+..+||. ..-..+-.+| . .++.+.
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha-----a~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA-----ASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSE-----EEEEEECCTTCSSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeee-----eeeEEEecCCCCCCceEEEEEEec
Confidence 7778899998765442 367888888762 222445653 1112222222 2 233231
Q ss_pred --cCcEEEEeCCCC---c------eeEEec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc
Q 004683 604 --EGQIDVYEAPTL---N------HTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 671 (737)
Q Consensus 604 --dg~I~iwd~~~~---~------~~~~~~-~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 671 (737)
.++++|.++... . .+..+. +........++..|+.-..++.-+.-|.|++||+.||.++..-.-.
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--- 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--- 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC---
Confidence 268999998432 1 111122 2223556778889998889999999999999999999988765432
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
...+. ..+.+. ...=+++....|.|.--.+.+.
T Consensus 301 -----~d~iF--~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 -----GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -----SSCEE--EEEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred -----CCceE--EecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 44455 333333 2334555558887776666554
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.14 E-value=0.34 Score=50.72 Aligned_cols=260 Identities=10% Similarity=0.037 Sum_probs=156.2
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCC
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 440 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~ 440 (737)
..|.|.|+... ....+..+. --+.-.+|..+.+|.=. ..++.|+|++..
T Consensus 48 ~~vvIiDl~~~---~~~~rrpi~-------AdsAIMnP~~~iiALra-g~~lQiFnle~K-------------------- 96 (494)
T 1bpo_A 48 AQVVIIDMNDP---SNPIRRPIS-------ADSAIMNPASKVIALKA-GKTLQIFNIEMK-------------------- 96 (494)
T ss_dssp CEEEEEETTST---TSCEEEECC-------CSEEEECSSSSCEEEEE-TTEEEEEETTTT--------------------
T ss_pred CeEEEEECCCC---Ccceecccc-------cceeeeCCCCcEEEEec-CCeEEEEchHHh--------------------
Confidence 36778888763 333322222 23566778887666554 678877776642
Q ss_pred CeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCC-CcEEEEecCCC----CCeEEEEEcCCC-e-EEEEE--
Q 004683 441 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPP----PIATYFILLPQD-L-FAFGF-- 510 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~-~-l~sgs-- 510 (737)
.-++... ....|.--.|- .+.|+-..+..|+-|++.. ..+++.+..|. ..|.....+++. + +++|-
T Consensus 97 -~klks~~---~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 172 (494)
T 1bpo_A 97 -SKMKAHT---MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (494)
T ss_dssp -EEEEEEE---CSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred -hhhccee---cCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence 2222111 34566667777 8899999999999999964 45667776543 456677778888 4 44443
Q ss_pred ----CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCC---CEEEEEeCC---CcEEEEeCCCC----ceeeceeeee-
Q 004683 511 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGAD---AQLCVWDAVGW----KKLCSKFLHS- 575 (737)
Q Consensus 511 ----~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g---~~l~s~s~d---g~I~lwdl~~~----~~~~~~~~~~- 575 (737)
-.|.+.+|..+. +..+.+.||......+...-+. ..+..+... +.+++.++... .....+...-
T Consensus 173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 246788999875 4456778876544433332111 233434332 68899988542 1111112210
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
++.... .+-..++..++....+.. ..-|.|++||+.++.++..-.- ....|...+-+....=++.....|.|.--
T Consensus 252 fppe~~--~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp CCTTST--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred CCcccc--cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEEccCceEEEE
Confidence 111111 145668888887777776 7889999999999999876654 24555555554444445555577777666
Q ss_pred EcCCCe
Q 004683 655 DTSTLE 660 (737)
Q Consensus 655 d~~~~~ 660 (737)
.++...
T Consensus 328 ~v~e~~ 333 (494)
T 1bpo_A 328 CVEEEN 333 (494)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 665544
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.13 E-value=0.29 Score=50.72 Aligned_cols=230 Identities=9% Similarity=0.040 Sum_probs=123.1
Q ss_pred CCeEEEEEe-CCEEEEEe-CCeEEEEECCCCc-EEEEec---CCCCCeEEEEEcCC----CeEEEEEC----C----CeE
Q 004683 454 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 515 (737)
Q Consensus 454 ~~V~~v~~s-~~~l~s~s-dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~s~~----~~l~sgs~----d----g~I 515 (737)
.....++|. +..++.+. +|.|++++ .+++ .+..+. ........++++|+ +.|+++.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 456789998 33455555 89999997 3454 222221 22346789999998 44443332 3 578
Q ss_pred EEEecCCC--c-----EE-EEEc-CCCcceEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCceeecee-
Q 004683 516 LVHCPCTK--K-----TK-AKLK-GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSKF- 572 (737)
Q Consensus 516 ~vwd~~~~--~-----~~-~~l~-~~~~~v~~l~~sp~g~~l~s~s~-------------dg~I~lwdl~~~~~~~~~~- 572 (737)
..|+...+ . .+ ..+. ...+....++|.|||.+.++.+. .|.|.-++.... .....+
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 88887654 1 11 1122 11223467999999987766442 144555555431 000000
Q ss_pred --eeecccCCCCCCCCeEEEEEec-CCCEEEEE--ecC--cEEEEeCCC--------C--------ceeEEecCCCCCCC
Q 004683 573 --LHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPT--------L--------NHTSQLVPDKMDLP 629 (737)
Q Consensus 573 --~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~--~dg--~I~iwd~~~--------~--------~~~~~~~~~~h~~~ 629 (737)
...+..++ .....++|+| +|...++- .+. .|.+..... + .++..+.. ....
T Consensus 187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~~~a 260 (354)
T 3a9g_A 187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS--ETWA 260 (354)
T ss_dssp TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT--CCCC
T ss_pred CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC--CCcC
Confidence 01122233 2466899999 67766652 222 344432110 0 12222211 1346
Q ss_pred eEEEEEc-------cCCCEEEEEecCCeEEEEEcCCC-eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 630 ITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 630 v~~~~~s-------p~~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
...++|. .+|.++++....+.|...++... +...... +.. + ..-.+..+++.| ||.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 7888883 57777777777788888888753 3221111 110 1 112345899999 787766654
No 308
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.11 E-value=0.00044 Score=54.19 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=51.5
Q ss_pred cCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHhhccccccH--HHHHHHhhcCChHHHHHHHhhh
Q 004683 134 CPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDI--NYFREYITSGEWDNAEKYLSAF 197 (737)
Q Consensus 134 ~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~~--~~~~~~i~~G~w~~~~~~l~~~ 197 (737)
+|-..+.+++|+.+-|++||..+||.+++.+|.+|.++..+. ..-.+.+++-.|..++++-+.+
T Consensus 2 ~miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 2 AMVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 456677899999999999999999999999999999988752 2234666777888888777655
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.10 E-value=0.22 Score=51.49 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCeEEEEE-------------CCCeEEEEecCC--CcEE-EEEcC-----CCcceEEEEEeC--CCC--EE
Q 004683 494 IATYFILLPQDLFAFGF-------------DDSSILVHCPCT--KKTK-AKLKG-----HQNRITCLAYSL--SLN--VL 548 (737)
Q Consensus 494 ~v~~~~~s~~~~l~sgs-------------~dg~I~vwd~~~--~~~~-~~l~~-----~~~~v~~l~~sp--~g~--~l 548 (737)
..-.+++.|+|.+++++ .+|.|.++|..+ ++.. -.+.+ .......+.+.+ ++. .+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44567788888334443 689999999873 3321 12222 223567777765 454 34
Q ss_pred EEEeC--CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEe----c--------------CcEE
Q 004683 549 VSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----E--------------GQID 608 (737)
Q Consensus 549 ~s~s~--dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~----d--------------g~I~ 608 (737)
++... +.+|.+|++...... ...+.++..... ...+.+++.++|.+.++.. | |.|+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~---~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL---PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC---SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC---CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 44333 467888877643211 122222222111 5788999999999877642 1 4455
Q ss_pred EEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEE
Q 004683 609 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIA 686 (737)
Q Consensus 609 iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs-~dg~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~ 686 (737)
-+|. ++.. .+.. .-...+.++||||++.|+.+. ..+.|+.|++.. +.....-... . . ..+-.++
T Consensus 207 r~d~--~~~~-~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~----~--g~PDGi~ 272 (355)
T 3sre_A 207 YYSP--NDVR-VVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---F----D--TLVDNIS 272 (355)
T ss_dssp EECT--TCCE-EEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---C----S--SEEEEEE
T ss_pred EEEC--CeEE-Eeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---C----C--CCCceEE
Confidence 5655 3322 2211 134578999999998887654 568999999863 4332211100 0 1 1233677
Q ss_pred EccCCCCEEEEEECC-CcEEEEecC
Q 004683 687 AHPLEPNRIALGLTN-GRVHVIEPL 710 (737)
Q Consensus 687 ~sp~d~~~las~s~D-g~V~iWd~~ 710 (737)
..+.+|++.+++..+ +.|..|++.
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EeCCCCcEEEEecCCceEEEEECCC
Confidence 777227777766544 244444443
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.07 E-value=0.39 Score=50.21 Aligned_cols=225 Identities=13% Similarity=0.142 Sum_probs=140.6
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCC-CcEEEEEcCCC----cceE
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 537 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~~~----~~v~ 537 (737)
.+.+|.-...++.++|+++...++.+.-.+.-+ -=.|-.+..|+..+ +..|+-|++.. ..+++.+..|. ..|.
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~~e~Vv-fWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QII 154 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVT-FWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEECSSCCC-EEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceecCCCce-EEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEE
Confidence 334444457899999999999998887655433 34554444333332 56899999974 35677776553 4677
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-----CEEEEE---
Q 004683 538 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--- 602 (737)
Q Consensus 538 ~l~~sp~g~~l~s~s~-------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-----~~l~~~--- 602 (737)
.-..+++.++++..+- .|.+.+|..+.+ +....+||. ..- ..+-.+| ..++.+
T Consensus 155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~F--~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASF--AQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSE---EEE--EEEECTTCSSEEEEEEEEECS
T ss_pred EEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeee---eee--EEEecCCCCCCceEEEEEEec
Confidence 7788999998775432 467888888752 222445663 121 2222222 222323
Q ss_pred -ecCcEEEEeCCCC---c------eeEEe-cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccccc
Q 004683 603 -HEGQIDVYEAPTL---N------HTSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 671 (737)
Q Consensus 603 -~dg~I~iwd~~~~---~------~~~~~-~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 671 (737)
..+.++|.++... . .+..+ .+........++..|+.-..++.-+.-|.|++||+.|+.++..-.-.
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--- 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--- 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc---
Confidence 2278999998532 1 11111 12122556778999998889999999999999999999988765432
Q ss_pred CCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCC
Q 004683 672 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 672 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~ 712 (737)
...+. ..+.+. ...=+++....|.|.--.+.+.
T Consensus 300 -----~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 300 -----GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp -----SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred -----CCceE--EecccC-CCCcEEEEccCceEEEEEEccc
Confidence 44455 333444 3344555568887776666554
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.06 E-value=0.096 Score=52.98 Aligned_cols=228 Identities=11% Similarity=0.023 Sum_probs=115.5
Q ss_pred EEEEEe-C--CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC----CeEEEEecCCCcEEEEEcC--CCc
Q 004683 465 HLFSAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKG--HQN 534 (737)
Q Consensus 465 ~l~s~s-d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d----g~I~vwd~~~~~~~~~l~~--~~~ 534 (737)
.++.|+ + ..+.+||..+++....-..........+..-++ .++.|+.+ ..+.+||+.+++-...-.. ...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 445555 2 679999998866443211111111111112356 66677654 5788999988754332111 111
Q ss_pred ceEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e----
Q 004683 535 RITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---- 603 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~d------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~---- 603 (737)
....+. -+++.++.|+.+ ..+.+||..+..-.. +..++.... .. +++. -+++.++.+ .
T Consensus 94 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 94 SLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQRC----SH-GMVE-ANGLIYVCGGSLGNN 162 (306)
T ss_dssp SCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSCCB----SC-EEEE-ETTEEEEECCEESCT
T ss_pred ceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCCcc----ee-EEEE-ECCEEEEECCCCCCC
Confidence 112222 266777777765 458899988754221 221222211 11 2222 255555553 2
Q ss_pred -----cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCeeEEEEecccccCC
Q 004683 604 -----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 604 -----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
-..+.+||..+.+-... ........-.+++. -++++++.|+.+ ..+.+||..+.+-... .. .+.
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~ 236 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SP---MPW 236 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CC---CSC
T ss_pred CcccccceEEEeCCCCCeEEEC-CCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CC---CCC
Confidence 34589999987754322 11111111112222 266777777654 4688999988753221 11 111
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECC-----CcEEEEecCCCceeeee
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGK 718 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~V~iWd~~~~~~~w~~ 718 (737)
.. ....++.+ ++.+++.|+.+ ..+.+||+.+. .|..
T Consensus 237 ~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~ 277 (306)
T 3ii7_A 237 KG----VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVA 277 (306)
T ss_dssp CB----SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEE
T ss_pred Cc----cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEe
Confidence 11 11112222 46788888754 46888888775 4665
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.081 Score=53.34 Aligned_cols=183 Identities=9% Similarity=0.007 Sum_probs=94.9
Q ss_pred CCEEEEEe-C-----CeEEEEECCCCc---EEEEecCCC--CCeEEEEEcCCC-eEEEEECC-----CeEEEEecCCCcE
Q 004683 463 GSHLFSAS-G-----GKISIFSLETFQ---TLATFANPP--PIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 525 (737)
Q Consensus 463 ~~~l~s~s-d-----g~i~vwd~~~~~---~~~~~~~~~--~~v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~~~ 525 (737)
+..++.|+ + ..+.+||..+.+ ....-.... ....++.+ ++ .++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 66666666 4 369999998766 333221111 11222222 56 66666644 3688999887653
Q ss_pred EEE--EcCCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 526 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 526 ~~~--l~~~~~~v~~l~~sp~g~~l~s~s~d-----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
... +......-.++. .+++.++.|+.+ ..+.+||+.+..-. .+..++... .....+.+ +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMATKR----SGAGVALL--NDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEE
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCccc----ccceEEEE--CCEE
Confidence 322 211111112222 267777777754 45889998875322 222122221 11122222 4555
Q ss_pred EEEE-e-----cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCe
Q 004683 599 LLSI-H-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 660 (737)
Q Consensus 599 l~~~-~-----dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~ 660 (737)
++.| . ...+.+||+.+.+-...-...........+ .-++++++.|+.+ ..|.+||..+.+
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5553 3 246999999877543321111111111222 2367777777765 467889988764
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.98 E-value=0.13 Score=51.97 Aligned_cols=186 Identities=10% Similarity=0.034 Sum_probs=95.4
Q ss_pred CCEEEEEe-C----CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC------CeEEEEecCCCcEEEEEc
Q 004683 463 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAKLK 530 (737)
Q Consensus 463 ~~~l~s~s-d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d------g~I~vwd~~~~~~~~~l~ 530 (737)
+..++.|+ + ..+.+||+.+.+....-..........+..-++ .++.|+.+ ..+.+||..+.+-...-.
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 66666666 4 578999998875543322111111111112256 66677655 368999998775432211
Q ss_pred CCCcc-eEEEEEeCCCCEEEEEeC---------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 531 GHQNR-ITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 531 ~~~~~-v~~l~~sp~g~~l~s~s~---------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
..... -.+++. -+++.++.|+. -..+.+||+.+..-. .+..++... ... +++.. +++.++
T Consensus 136 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~-~~~~~-~~~i~v 205 (306)
T 3ii7_A 136 MLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEAR----KNH-GLVFV-KDKIFA 205 (306)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSSCC----BSC-EEEEE-TTEEEE
T ss_pred CcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccchh----hcc-eEEEE-CCEEEE
Confidence 11111 111222 25666666654 345889999875322 222122221 111 22222 555555
Q ss_pred E-Eec-----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCe
Q 004683 601 S-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 660 (737)
Q Consensus 601 ~-~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~ 660 (737)
. |.+ ..+.+||..+.+-...-...........+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 5 332 4689999987653322111111112222222 67788888754 568999998765
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.97 E-value=0.44 Score=49.32 Aligned_cols=229 Identities=10% Similarity=0.028 Sum_probs=117.4
Q ss_pred CCeEEEEEe--CCEEEEEeCCeEEEEECCCCcE--EEEec---CCCCCeEEEEEcCC----CeEEEEEC-C-----CeEE
Q 004683 454 DSISCFALR--GSHLFSASGGKISIFSLETFQT--LATFA---NPPPIATYFILLPQ----DLFAFGFD-D-----SSIL 516 (737)
Q Consensus 454 ~~V~~v~~s--~~~l~s~sdg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~s~~----~~l~sgs~-d-----g~I~ 516 (737)
.....++|. |+++++-.+|.|++++ +++. +..+. ........++++|+ +.|+++.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346689998 6655554489999998 4432 22221 22346789999998 44443332 2 6788
Q ss_pred EEecCCCcE------EEEEc---CCCcceEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCceeece---
Q 004683 517 VHCPCTKKT------KAKLK---GHQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKLCSK--- 571 (737)
Q Consensus 517 vwd~~~~~~------~~~l~---~~~~~v~~l~~sp~g~~l~s~s~d-------------g~I~lwdl~~~~~~~~~--- 571 (737)
.++...+.. +..+. +..+....++|.|||.+.++.+.. |.|.-+|.... .....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCccc
Confidence 888765421 11232 112234689999999766664321 45555555431 00000
Q ss_pred -----eeeecccCCCCCCCCeEEEEEec-CCCEEEE-E-ecC-------cEEEEeCCC----------------CceeEE
Q 004683 572 -----FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-I-HEG-------QIDVYEAPT----------------LNHTSQ 620 (737)
Q Consensus 572 -----~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~-~-~dg-------~I~iwd~~~----------------~~~~~~ 620 (737)
....+..++ .....++|+| +|...++ . .+. .|.+..... ..++..
T Consensus 188 ~~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 188 GRRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TCTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 001112233 2466789999 6666665 2 222 243332111 012222
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEE-EEecccccCCCCccCceeeEEEEEccCCCCEEEEEE
Q 004683 621 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 699 (737)
Q Consensus 621 ~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 699 (737)
+. +......++| .+|.++++....+.|...++....... .-....+. ...-.+..+++.| ||.++++..
T Consensus 264 ~~---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 264 WP---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp CT---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECT-TSCEEEEEC
T ss_pred cC---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECC-CCcEEEEEe
Confidence 21 1334567777 566666666666777777766432110 00000010 0012345899999 777666653
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.89 E-value=0.16 Score=51.15 Aligned_cols=222 Identities=12% Similarity=0.090 Sum_probs=112.3
Q ss_pred CeEEEEECCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEECCC-----eEEEEecCCCcEEEEE--cCCCcceEEEEEe
Q 004683 472 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKL--KGHQNRITCLAYS 542 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~~~~~~l--~~~~~~v~~l~~s 542 (737)
..+.+||+.+.+....-....... .+++. -++ .++.|+.++ .+.+||..+.+-...- .........+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence 468899988765433211111111 12222 256 666766543 6889998876533221 11111111222
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Ee-------cCcEEE
Q 004683 543 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------EGQIDV 609 (737)
Q Consensus 543 p~g~~l~s~s~dg-----~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~-------dg~I~i 609 (737)
-+++.++.|+.++ .+.+||+.+..-.. +..++... ... +++.. +++.++. |. -..+.+
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r----~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR----SSV-GVGVV-GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC----BSC-EEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc----cCc-eEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence 2567777777653 47788988743222 22122221 111 22222 4555555 32 235899
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEE
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 684 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 684 (737)
||..+.+-...-......... +++ .-++++++.|+.+ ..+.+||..+.+-...-.. +.....+ ..
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~r~~~----~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM----NMCRRNA----GV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC----SSCCBSC----EE
T ss_pred EeCCCCcEEECCCCccccccc-cEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC----CCccccC----eE
Confidence 999876543221111111111 222 2367777777764 4689999988753322111 1111111 12
Q ss_pred EEEccCCCCEEEEEECCC-----cEEEEecCCCceeeeecC
Q 004683 685 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 685 v~~sp~d~~~las~s~Dg-----~V~iWd~~~~~~~w~~~~ 720 (737)
+.+ ++.+++.|+.++ .|.+||+.+. .|...+
T Consensus 248 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 248 CAV---NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp EEE---TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred EEE---CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 222 567888887654 4899999876 487644
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.85 E-value=0.13 Score=51.80 Aligned_cols=222 Identities=12% Similarity=0.024 Sum_probs=112.2
Q ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEECC-----CeEEEEecCCCc---EEEE--EcCCCcceEEEE
Q 004683 472 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKAK--LKGHQNRITCLA 540 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~~---~~~~--l~~~~~~v~~l~ 540 (737)
..+.+||+.+.+....-..........+...++ .++.|+.+ ..+.+||+.+++ -... +.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 468899998765433211111111111222356 66677654 368999988766 3222 111111112222
Q ss_pred EeCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec-----CcEEE
Q 004683 541 YSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDV 609 (737)
Q Consensus 541 ~sp~g~~l~s~s~d-----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d-----g~I~i 609 (737)
.+++.++.|+.+ ..+.+||+.+.+-.. +..++.... .. +++.. +++.++.| .+ ..+.+
T Consensus 111 --~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 111 --LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTARE----GA-GLVVA-SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp --ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSCCB----SC-EEEEE-TTEEEEECCBCSSCBCCCEEE
T ss_pred --ECCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCCcc----cc-eEEEE-CCEEEEECCCCCCcccceEEE
Confidence 256777777654 358889988754222 222222211 11 22222 55655553 32 46899
Q ss_pred EeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEE
Q 004683 610 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 684 (737)
Q Consensus 610 wd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 684 (737)
||..+.+-...-...........+ ..++++++.|+.+ ..+.+||..+.+-...-. .+... ....+
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r----~~~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPR----CYVGA 249 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCC----BSCEE
T ss_pred EeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcc----cceeE
Confidence 999876543321111111111222 2367777777764 468999998876433211 11111 11112
Q ss_pred EEEccCCCCEEEEEECC-----CcEEEEecCCCceeeeec
Q 004683 685 IAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 685 v~~sp~d~~~las~s~D-----g~V~iWd~~~~~~~w~~~ 719 (737)
+.+ ++.+++.|+.+ ..|.+||+.+. .|...
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 284 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVV 284 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEc
Confidence 222 46788888765 35788888765 47653
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.84 E-value=0.079 Score=55.33 Aligned_cols=167 Identities=14% Similarity=0.033 Sum_probs=101.7
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCc-----
Q 004683 542 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN----- 616 (737)
Q Consensus 542 sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~----- 616 (737)
..+|..++.+- ++.||.-++.... ..+.+. .+..-.. ..|..+..+|+|++||...+..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~-~~~~i~f--~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLN-FSRHLVL--DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS--SCEEEE-CTTTCCC--CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC--cceEEe-cCccccc--CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence 44555555544 4677777776421 112222 2210010 36888999999999999888999999987321
Q ss_pred -------eeEEecCCC----CCCCeEEEEEcc---CCCEEEEEecCCeEEEEEcCCCe--eEEEEecccccCCCCccCce
Q 004683 617 -------HTSQLVPDK----MDLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLEL 680 (737)
Q Consensus 617 -------~~~~~~~~~----h~~~v~~~~~sp---~~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~~~~~~g~~~~~v 680 (737)
..+.+..+. ...+|..+.|+| .+..|++-..|+.|++||+.... +. .+... ....|-.....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~-~~~fg~d~~~~ 180 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKP-NNSFGLDARVN 180 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCC-CSEEESCSSCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcc-ccccCCCcccc
Confidence 112232211 256799999998 45789999999999999998632 22 23211 00001111113
Q ss_pred eeEEEEEccCCCCEEEEEE--CCCcEEEEecCCCceeeee
Q 004683 681 YPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 681 ~~~~v~~sp~d~~~las~s--~Dg~V~iWd~~~~~~~w~~ 718 (737)
.+.+++|.+ ++-.|...+ .+|.|+-..+--+. +|..
T Consensus 181 ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~-~~~~ 218 (452)
T 3pbp_A 181 DITDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS-VLLL 218 (452)
T ss_dssp CEEEEEECT-TSSCEEEEECTTSCEEEEESSCCCS-EEEC
T ss_pred eEEEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc-cccc
Confidence 355899998 677666644 77888777665555 4544
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.79 E-value=0.083 Score=55.19 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=95.1
Q ss_pred cCCC-eEEEEECCCeEEEEecCCCcEEEEEcCC----CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec-----
Q 004683 501 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 570 (737)
Q Consensus 501 s~~~-~l~sgs~dg~I~vwd~~~~~~~~~l~~~----~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~----- 570 (737)
+.+| .++.+- ++.||..++..+...+.++.. -..|..+..+|+|++++..+ +..|.|-.+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3455 554443 578888887755444555432 22578899999999999886 55888888873211100
Q ss_pred e--eeeecccCCC--CCCCCeEEEEEecCC---CEEEE-EecCcEEEEeCCCCc--eeEEec-------CCCCCCCeEEE
Q 004683 571 K--FLHSFQTGLV--PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLN--HTSQLV-------PDKMDLPITYA 633 (737)
Q Consensus 571 ~--~~~~~~~~~~--~~~~~v~~l~~sp~g---~~l~~-~~dg~I~iwd~~~~~--~~~~~~-------~~~h~~~v~~~ 633 (737)
. ..+.+.-+.. ....+|..+.|+|-+ ..|++ ..|+.|++||+.... +. .+. .......|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 0 0111111100 012689999999975 46776 799999999997522 22 221 11223678999
Q ss_pred EEccCCCEEEEEe--cCCeEEEE
Q 004683 634 TYSCDGKCIYVSC--KSGHVKVF 654 (737)
Q Consensus 634 ~~sp~~~~l~sgs--~dg~I~vw 654 (737)
+|++++-.|+..+ ++|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999887777755 78888754
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0031 Score=64.83 Aligned_cols=201 Identities=6% Similarity=-0.061 Sum_probs=109.4
Q ss_pred eEEEEECCCeEEEEecCCCcEEEEEcCC-CcceEEEEE--eCCCCEEEEE--eCCCcEEEEeCCCCceeeceeeeecccC
Q 004683 505 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTG 579 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~-~~~v~~l~~--sp~g~~l~s~--s~dg~I~lwdl~~~~~~~~~~~~~~~~~ 579 (737)
.+++++.||.|.-+|..+|+....++.. ..++....- .+.+..++.+ +.||.|..+|..++.......+..+...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 7889999999999999999998888653 122222110 0112234433 5899999999888643322111111110
Q ss_pred CCCCCCCeEE---EEE------ecCCCEEEEEecCcEEEEeCCCCceeEEecCCCCCCCe-----EEEEEc-----cCCC
Q 004683 580 LVPETTIVNH---IQF------HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPI-----TYATYS-----CDGK 640 (737)
Q Consensus 580 ~~~~~~~v~~---l~~------sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h~~~v-----~~~~~s-----p~~~ 640 (737)
.++.. ..+ +.++..++.+.+|.+.-.|+.+|+.+.++........+ .|.... ..+.
T Consensus 92 -----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 -----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp -----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred -----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 12221 001 13343344479999999999999999988653211110 111110 1245
Q ss_pred EEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceee
Q 004683 641 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 716 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w 716 (737)
.|+.|..+..+.+.+ ++|+ ++.+....+..... ...+. .....+. |+.+ +.++.||.|.-.|..+++.+|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 788888888887777 4564 44332211110000 00000 0000012 3555 447889999999999999999
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.66 E-value=1 Score=51.86 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=132.3
Q ss_pred CCCeEEEEEe-CCEEEEEeCCeEEEEECCCCcEEEEec----CCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEE
Q 004683 453 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFA----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 527 (737)
Q Consensus 453 ~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~ 527 (737)
...|.++.-. ..++-.|...-+..||-.+ ...+. .....|.++....+|.|..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEEEEECCCccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC
Confidence 4678888888 5556666633356676322 22222 123468888877777666666654 7899988764322
Q ss_pred EEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcE
Q 004683 528 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 607 (737)
Q Consensus 528 ~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I 607 (737)
........|.++.. .+| .+..++.+ .+..+|..++.... +.....+.. ...|.++...++|...+.+. +.+
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~---~~~~~~~l~--~~~i~~i~~d~~g~lWigt~-~Gl 167 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS---FDTRRNGLP--NNTIYSIIRTKDNQIYVGTY-NGL 167 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE---ECHHHHCCS--CSCEEEEEECTTCCEEEEET-TEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE---eccCCCCcC--CCeEEEEEEcCCCCEEEEeC-CCH
Confidence 11112234666654 355 56666655 68888987643211 100011111 14688888888888766554 468
Q ss_pred EEEeCCCCceeEEecCCC----CCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeE
Q 004683 608 DVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 608 ~iwd~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
..+|..+++.. .+.... ....|.++...+++..|..|+. +-+..++..+++........ ... +.
T Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--------~~~--i~ 235 (758)
T 3ott_A 168 CRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--------NNS--IK 235 (758)
T ss_dssp EEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--------EEE--EE
T ss_pred hhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--------CCe--EE
Confidence 88888766532 222111 1234888888777765555554 45888998877643221110 112 33
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
++...+ ++.+.+ |+. +.+.+++..+++
T Consensus 236 ~i~~d~-~g~lWi-gT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 236 SLALDG-NGDLLA-GTD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEECT-TCCEEE-EET-TEEEEECCTTSC
T ss_pred EEEEcC-CCCEEE-EeC-CceeEEecCCCc
Confidence 676666 555444 444 457888876643
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.64 E-value=0.31 Score=50.45 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEE--EEEc---CCCcceEEEEEeCC---CCEEEEEeC-C-----CcEE
Q 004683 493 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--AKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQLC 558 (737)
Q Consensus 493 ~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~--~~l~---~~~~~v~~l~~sp~---g~~l~s~s~-d-----g~I~ 558 (737)
.....++|.|+|.++++..+|.|.+++ +++.. ..+. ........++++|+ +..|.++.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999444556779999998 44422 1111 12356889999998 555544433 2 5788
Q ss_pred EEeCCCCceeeceee-eecc--cCCCCCCCCeEEEEEecCCCEEEE
Q 004683 559 VWDAVGWKKLCSKFL-HSFQ--TGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 559 lwdl~~~~~~~~~~~-~~~~--~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
.|+...+.......+ ..++ .+.. .....++|.|+|...++
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 888775322111222 2132 1111 23458999999976665
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.60 E-value=0.68 Score=46.83 Aligned_cols=224 Identities=11% Similarity=0.071 Sum_probs=112.2
Q ss_pred eCCeEEEEECCCCcEEE-EecCCCCCeEEEEEcCCC-eEEEEEC-----C------CeEEEEecCCCcEEEEEcCCCcce
Q 004683 470 SGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAKLKGHQNRI 536 (737)
Q Consensus 470 sdg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~-~l~sgs~-----d------g~I~vwd~~~~~~~~~l~~~~~~v 536 (737)
+...+.+||..+++... .+..............++ .++.|+. . ..+..||..+++-. .+.....+-
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcch
Confidence 34688999998877543 111222333333444566 6666663 1 13788898876532 222111111
Q ss_pred --EEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e-c
Q 004683 537 --TCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E 604 (737)
Q Consensus 537 --~~l~~sp~g~~l~s~s~d--------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~-d 604 (737)
.+++.. +++.++.|+.+ ..+.+||..+.+-. .+..++.... .. +++. -+++.++.| . +
T Consensus 90 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVVY----GH-TVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSSCCB----SC-EEEE-ETTEEEEECCBCT
T ss_pred hceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCCccc----ce-eEEE-ECCEEEEEeCCCC
Confidence 112222 56666777632 45889999875322 2222222211 11 2222 345555554 3 2
Q ss_pred -----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEEcCCCeeEEEEecccccCCC
Q 004683 605 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPG 674 (737)
Q Consensus 605 -----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg-----~I~vwd~~~~~~~~~~~~~~~~~~g 674 (737)
..+.+||..+.+-.. +........-.+++ .-++++++.|+.++ .+.+||..+.+-...-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC
T ss_pred CCcccceEEEEeCCCCeEEE-CCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc
Confidence 469999998765322 11111111111222 23677777777654 58899998875333211 1111
Q ss_pred CccCceeeEEEEEccCCCCEEEEEECCC--------------cEEEEecCCCceeeeec
Q 004683 675 TISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL 719 (737)
Q Consensus 675 ~~~~~v~~~~v~~sp~d~~~las~s~Dg--------------~V~iWd~~~~~~~w~~~ 719 (737)
. .....+.+ ++.+++.|+.++ .|.+||+.+. .|...
T Consensus 234 r----~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 234 R----SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp C----BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred c----cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 1 11112222 457778777642 3677887665 57764
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.59 E-value=0.77 Score=47.45 Aligned_cols=237 Identities=10% Similarity=0.020 Sum_probs=123.2
Q ss_pred CeEEEEEe--CC-EEEEEeCCeEEEEECCCCcEEEEe-------cCCCCCeEEEEEcCC----CeEEEE-EC-------C
Q 004683 455 SISCFALR--GS-HLFSASGGKISIFSLETFQTLATF-------ANPPPIATYFILLPQ----DLFAFG-FD-------D 512 (737)
Q Consensus 455 ~V~~v~~s--~~-~l~s~sdg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~----~~l~sg-s~-------d 512 (737)
....++|. |+ ++++-..|.|++++.. +.....+ .........++++|+ +.|+++ +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45688998 66 5544448999999853 3322111 122345689999995 444333 22 2
Q ss_pred CeEEEEecCCC--c--EEE-EEcC------CCcceEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCcee
Q 004683 513 SSILVHCPCTK--K--TKA-KLKG------HQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKL 568 (737)
Q Consensus 513 g~I~vwd~~~~--~--~~~-~l~~------~~~~v~~l~~sp~g~~l~s~s~d-------------g~I~lwdl~~~~~~ 568 (737)
..|..|++..+ . ... .+.. ..+....++|.|||.+.++.+.. |.|.-+|.... ..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35666766533 1 111 1211 11234679999999665554332 45666666531 00
Q ss_pred ece--------eeeecccCCCCCCCCeEEEEEec-CCCEEEEE--ecCcEEEEeCCCCc---------------------
Q 004683 569 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEGQIDVYEAPTLN--------------------- 616 (737)
Q Consensus 569 ~~~--------~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~--~dg~I~iwd~~~~~--------------------- 616 (737)
... ....+..++ .....++|+| +|...++- .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 011122233 3578899999 66666552 22222222222111
Q ss_pred ----------eeEEecCCCCCCCeEEEEEcc-------CCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCc
Q 004683 617 ----------HTSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 679 (737)
Q Consensus 617 ----------~~~~~~~~~h~~~v~~~~~sp-------~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~ 679 (737)
++..+. +...+..++|.. +|+++++....+.|...++..++....... .. ...
T Consensus 253 ~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~~~ 322 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----DRG 322 (353)
T ss_dssp CBSSCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----GGC
T ss_pred cCCCCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----CCC
Confidence 111111 123567788863 567777777778888888876654333211 10 111
Q ss_pred eeeEEEEEccCCCCEEEEEECCCcEEEEec
Q 004683 680 LYPLVIAAHPLEPNRIALGLTNGRVHVIEP 709 (737)
Q Consensus 680 v~~~~v~~sp~d~~~las~s~Dg~V~iWd~ 709 (737)
..+..+++.| ||.++++.. ++.=+||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence 2355899999 787666533 222345554
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.40 E-value=0.57 Score=46.97 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=93.8
Q ss_pred CCEEEEEe-C-----CeEEEEECCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEECCC-----eEEEEecCCCcEEEE-
Q 004683 463 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK- 528 (737)
Q Consensus 463 ~~~l~s~s-d-----g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~~~-~l~sgs~dg-----~I~vwd~~~~~~~~~- 528 (737)
+..++.|+ + ..+.+||..+.+....-....... .+++. -++ .++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 66666666 3 358899998765443322111111 12222 256 666666553 578899887654322
Q ss_pred -EcCCCcceEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEE
Q 004683 529 -LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 600 (737)
Q Consensus 529 -l~~~~~~v~~l~~sp~g~~l~s~s~d-------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 600 (737)
+....... +++. -+++.++.|+.+ ..+.+||+.+..-.. +..++.... .. +++.. +++.++
T Consensus 141 ~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~~-~~~~~-~~~iyv 209 (302)
T 2xn4_A 141 PMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRS----GA-GVGVL-NNLLYA 209 (302)
T ss_dssp CCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCB----SC-EEEEE-TTEEEE
T ss_pred CCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCccccc----cc-cEEEE-CCEEEE
Confidence 11111111 2222 256667766543 358899988753222 222222221 12 22222 455555
Q ss_pred EE-ec-----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEEcCCCe
Q 004683 601 SI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 660 (737)
Q Consensus 601 ~~-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg-----~I~vwd~~~~~ 660 (737)
.| .+ ..+.+||..+.+-... ........-.++ ...++++++.|+.++ .+.+||..+.+
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRNAGV-CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeC-CCCCCccccCeE-EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 53 33 4699999987654322 111111111122 223677777777653 58999998775
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.30 E-value=0.99 Score=46.63 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=81.5
Q ss_pred CCCeEEEEEcCCCeEEEEECCCeEEEEecCCCc-EEEEEc---CCCcceEEEEEeCC---CCEEEEEeC----C----Cc
Q 004683 492 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLK---GHQNRITCLAYSLS---LNVLVSSGA----D----AQ 556 (737)
Q Consensus 492 ~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~-~~~~l~---~~~~~v~~l~~sp~---g~~l~s~s~----d----g~ 556 (737)
-.....++|.|+|.++++..+|.|+++| .+++ .+..+. ........++++|+ +..|.++.. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456799999999555556779999997 4454 222211 12356889999997 445544433 3 56
Q ss_pred EEEEeCCCC--ceeeceee-eecccCCCCCCCCeEEEEEecCCCEEEE-Ee-------------cCcEEEEeCCCCce--
Q 004683 557 LCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------------EGQIDVYEAPTLNH-- 617 (737)
Q Consensus 557 I~lwdl~~~--~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~-------------dg~I~iwd~~~~~~-- 617 (737)
|..|+.... .....+.+ ..++.... .....++|.|+|.+.++ +. .|.|.-++.. ++.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~ 182 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA 182 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence 777877653 11111111 11222111 23457999999987666 32 1456666653 220
Q ss_pred ------eEEecCCCCCCCeEEEEEcc-CCCEEEE
Q 004683 618 ------TSQLVPDKMDLPITYATYSC-DGKCIYV 644 (737)
Q Consensus 618 ------~~~~~~~~h~~~v~~~~~sp-~~~~l~s 644 (737)
...+.. + -.....++|+| +|.+.++
T Consensus 183 ~npf~~~~i~a~-G-~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 183 DNPFPNSPIWSY-G-HRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp TSSSTTCCEEEE-C-CSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCCcEEEE-c-cCCcceEEEeCCCCCEEEE
Confidence 011111 1 23456899999 6665554
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.25 E-value=0.44 Score=48.08 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=114.8
Q ss_pred CCEEEEEe-C----CeEEEEECCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEEC----C-----CeEEEEecCCCcEE
Q 004683 463 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTK 526 (737)
Q Consensus 463 ~~~l~s~s-d----g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~~~-~l~sgs~----d-----g~I~vwd~~~~~~~ 526 (737)
+..++.|+ + ..+.+||..+.+....-....... .+++. .++ .++.|+. + ..+.+||+.+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 55566665 2 478999998765433211111111 12222 255 5666654 2 36889998876532
Q ss_pred EE--EcCCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEE
Q 004683 527 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 599 (737)
Q Consensus 527 ~~--l~~~~~~v~~l~~sp~g~~l~s~s~d-----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 599 (737)
.. +.........+.+ +++.++.|+.+ ..+.+||..+..-.. +..++... .....+.+ +++.+
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRR----IGVGVAVL--NRLLY 172 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCccc----cceEEEEE--CCEEE
Confidence 21 1111111122222 66677776643 368889988753222 22122221 11222222 45555
Q ss_pred EEE-ec-----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCeeEEEEecc
Q 004683 600 LSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLT 668 (737)
Q Consensus 600 ~~~-~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~ 668 (737)
+.| .+ ..+.+||..+.+-...-...........+. -++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-- 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC--
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC--
Confidence 553 32 468999997765332111111111122222 267777777764 569999998875332111
Q ss_pred cccCCCCccCceeeEEEEEccCCCCEEEEEECC-----CcEEEEecCCCceeeeec
Q 004683 669 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 669 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~V~iWd~~~~~~~w~~~ 719 (737)
.+... ... +++.. ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 249 --~p~~r----~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 293 (308)
T 1zgk_A 249 --MKHRR----SAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEV 293 (308)
T ss_dssp --CSSCC----BSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEE
T ss_pred --CCCCc----cce-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeec
Confidence 11111 111 22222 56788888754 35788888765 47653
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.16 E-value=0.45 Score=57.20 Aligned_cols=189 Identities=11% Similarity=0.141 Sum_probs=114.4
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEECCCeEEEEecCC-CcEEEEEcCC----Ccc
Q 004683 463 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNR 535 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~l~sgs~dg~I~vwd~~~-~~~~~~l~~~----~~~ 535 (737)
.+.+|.-...++.|+|+++...++.+.-... |.-=.|-.+. -++| +..|+.|++.. ..+++.|..| ...
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCCC-ceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 3344444478999999999888887765443 4444554444 4444 45899999964 3445555444 456
Q ss_pred eEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe--cCC-CEEEEE---
Q 004683 536 ITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQ-IHLLSI--- 602 (737)
Q Consensus 536 v~~l~~sp~g~~l~s~s-------~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~g-~~l~~~--- 602 (737)
|..-..+++.++++..+ -.|.+.+|..+.+ +.+...||. ..-..+... +.. ..++.+
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha---~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhH---hhhheeccCCCCCCceEEEEEEec
Confidence 77777888999877543 3477888887752 222344553 222122211 111 222223
Q ss_pred -ecCcEEEEeCCCC---ce------eEEecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEE
Q 004683 603 -HEGQIDVYEAPTL---NH------TSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 665 (737)
Q Consensus 603 -~dg~I~iwd~~~~---~~------~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~ 665 (737)
..+.++|.++... .+ +..+.+ ........++..|+.-..++.-+.-|.|++||+.||..+..-
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2368899888542 11 111111 112444567888888888888889999999999999876543
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.11 E-value=0.34 Score=58.23 Aligned_cols=260 Identities=10% Similarity=0.043 Sum_probs=141.0
Q ss_pred CeEEEeecCccCCCCceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCC
Q 004683 361 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 440 (737)
Q Consensus 361 g~v~iW~~~~~~~~~~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~ 440 (737)
..|.|.|+... ....+..+ .--+.-.+|..+.+|.=+ ..++.|+|+.+...
T Consensus 48 ~~vvIidl~~~---~~~~rrpi-------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k------------------ 98 (1630)
T 1xi4_A 48 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 98 (1630)
T ss_pred ceEEEEECCCC---CCcccccc-------cchhhccCCCcceEEEec-CCeEEEeehHHhhh------------------
Confidence 36778887752 22222111 223455677777555443 67888888764221
Q ss_pred CeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCC-CcEEEEecCC----CCCeEEEEEcCCC-e-EEEEE--
Q 004683 441 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-L-FAFGF-- 510 (737)
Q Consensus 441 ~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~-~-l~sgs-- 510 (737)
++.. ....+|.--.|- .+.|+-.++..|+-|++.. ..+++.|..| ...|..-..+++. + +++|-
T Consensus 99 ---lks~---~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred ---hccc---ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 1110 134566666777 8888888899999999964 3444445444 3456677778888 4 44443
Q ss_pred ----CCCeEEEEecCCCcEEEEEcCCCcceEEEEEe--CC-CCEEEEEeC---CCcEEEEeCCCC----ceeeceeeee-
Q 004683 511 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LS-LNVLVSSGA---DAQLCVWDAVGW----KKLCSKFLHS- 575 (737)
Q Consensus 511 ----~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~s--p~-g~~l~s~s~---dg~I~lwdl~~~----~~~~~~~~~~- 575 (737)
-.|.+.+|.++.+ ..+.+.||......+... +. ...+..+.. .+.+++.++... .....+...-
T Consensus 173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 3478889987753 345566665444333331 11 122222222 267888888542 1111111110
Q ss_pred cccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 004683 576 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 654 (737)
Q Consensus 576 ~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vw 654 (737)
++.... ..-..++..++....+.. +.-|.|++||+.++.++..-.. ...+|...+-+....=++.....|.|.--
T Consensus 252 ~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred CCcccc--cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc--cCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 111111 134456777776666655 7889999999999998765432 13334333333322223333355666555
Q ss_pred EcCCCe
Q 004683 655 DTSTLE 660 (737)
Q Consensus 655 d~~~~~ 660 (737)
.+....
T Consensus 328 ~v~~~~ 333 (1630)
T 1xi4_A 328 CVEEEN 333 (1630)
T ss_pred EEccch
Confidence 555443
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.14 Score=52.35 Aligned_cols=196 Identities=8% Similarity=0.018 Sum_probs=100.4
Q ss_pred EEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEE-e-CCeEEEEE
Q 004683 402 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFS 478 (737)
Q Consensus 402 ~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~-s-dg~i~vwd 478 (737)
.++.++.||.|.-.|..+++. .|..+.+.........+.... . +..++.. . ||.+..++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~------------~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI------------IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE------------EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE------------EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEE
Confidence 578888899998888775543 576655410000000001100 1 2334443 4 89999999
Q ss_pred CCCCcEEEEecC----CCCCeEE---EEE------cCCCeEEEEECCCeEEEEecCCCcEEEEEcCCC--cc-----eEE
Q 004683 479 LETFQTLATFAN----PPPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--NR-----ITC 538 (737)
Q Consensus 479 ~~~~~~~~~~~~----~~~~v~~---~~~------s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~--~~-----v~~ 538 (737)
..+|.....+.. ...++.. ..+ +.++.+++|+.+|.+...|+.+|+.+..+.... .. ..|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 988865544431 1112211 000 123388999999999999999999998886421 10 111
Q ss_pred EEEe-----CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCe-EEEEEecCCCEEEEEecCcEEEEeC
Q 004683 539 LAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVYEA 612 (737)
Q Consensus 539 l~~s-----p~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~sp~g~~l~~~~dg~I~iwd~ 612 (737)
.... ..+..++.+..+..+.+.+ ++++ ............... ..+ .+...+.++.+++++.||.|.-+|.
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~--~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD--VPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT--HHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc--cccccccccccCCcEEEECCCCEEEEEEC
Confidence 1111 1235677777777776666 3332 111111100000000 000 0001123466666667788888887
Q ss_pred CCCceeE
Q 004683 613 PTLNHTS 619 (737)
Q Consensus 613 ~~~~~~~ 619 (737)
.+|..+-
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 7777654
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.00 E-value=0.37 Score=49.57 Aligned_cols=114 Identities=14% Similarity=-0.052 Sum_probs=66.2
Q ss_pred EcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC---CCEEEE--E-
Q 004683 529 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I- 602 (737)
Q Consensus 529 l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~--~- 602 (737)
+...-...+.++|.|+|+++++--..|.|++++..++.......+..+..... .....|+++|+ +.+|.+ +
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEec
Confidence 33334567899999999977766558999999876543211111111111111 57889999996 344544 3
Q ss_pred -ecCcEEEEeCCCC----------ceeE-EecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 603 -HEGQIDVYEAPTL----------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 603 -~dg~I~iwd~~~~----------~~~~-~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.++.|.-|....+ +.+. .+.. .....-..+.|.|||.+.++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 3456777766541 1111 2221 1123346799999998777654
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.79 E-value=0.93 Score=45.61 Aligned_cols=174 Identities=11% Similarity=0.025 Sum_probs=87.5
Q ss_pred CeEEEEECCCCcEEEEecCCC--CCeEEEEEcCCC-eEEEEECC-----CeEEEEecCCCcEEEE--EcCCCcceEEEEE
Q 004683 472 GKISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 541 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~-~l~sgs~d-----g~I~vwd~~~~~~~~~--l~~~~~~v~~l~~ 541 (737)
..+.+||+.+.+....-.... ....++.+ ++ .++.|+.+ ..+.+||+.+.+-... +......-.++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468899988765433211111 11222222 56 56665543 3688999887653321 1111111122222
Q ss_pred eCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-ec-----CcEEEE
Q 004683 542 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDVY 610 (737)
Q Consensus 542 sp~g~~l~s~s~d-----g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~d-----g~I~iw 610 (737)
+++.++.|+.+ ..+.+||+.+..-.. +..++... .....+.+ +++.++.+ .+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIR----SGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCCcc----ccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 56777777654 458899988753222 22122221 11222222 55555554 32 569999
Q ss_pred eCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCe
Q 004683 611 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 660 (737)
Q Consensus 611 d~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~ 660 (737)
|+.+.+-.. +........-.+++. -++++++.|+.+ ..+.+||..+.+
T Consensus 237 d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTF-VAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEE-CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEE-CCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 998765432 211111111112222 367777777754 467888888765
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.78 E-value=0.84 Score=47.04 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=29.9
Q ss_pred cEEEEeCCCCcee--EEecCCCCCCCeEEEEEccCCCEEEEEecCC------eEEEEEcCCCeeEEEEe
Q 004683 606 QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQIN 666 (737)
Q Consensus 606 ~I~iwd~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg------~I~vwd~~~~~~~~~~~ 666 (737)
.+.+||+.+.+-. ..+... ... ..+...++++++.|+.++ .|.++++++++......
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~--r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG--RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSC--CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCC--ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 5789998865432 222211 111 222335678888888652 46667888877665543
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.78 E-value=0.6 Score=48.14 Aligned_cols=181 Identities=12% Similarity=0.074 Sum_probs=104.8
Q ss_pred CCeEEEEECCC--CcEE-EEecC-----CCCCeEEEEEcC--CC--eEEEEEC---CCeEEEEecCCC-c---EEEEEcC
Q 004683 471 GGKISIFSLET--FQTL-ATFAN-----PPPIATYFILLP--QD--LFAFGFD---DSSILVHCPCTK-K---TKAKLKG 531 (737)
Q Consensus 471 dg~i~vwd~~~--~~~~-~~~~~-----~~~~v~~~~~s~--~~--~l~sgs~---dg~I~vwd~~~~-~---~~~~l~~ 531 (737)
+|.|.++|..+ ++.. ..+.+ ..-....+.+.+ ++ +|+++.. +.+|.+|++..+ . .+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999874 2221 12222 112455666655 44 5555533 457778776543 2 2334443
Q ss_pred C-CcceEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEe
Q 004683 532 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 593 (737)
Q Consensus 532 ~-~~~v~~l~~sp~g~~l~s~s~-----------------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 593 (737)
. -...+.+++.++|++.++... .|.|.-+|... ... +..+- ...+.++|+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-----~~~---~~~~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-----VRV---VAEGF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-----CEE---EEEEE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-----EEE---eecCC----cccCcceEC
Confidence 2 245789999999987776541 23455555421 111 11111 357789999
Q ss_pred cCCCEEEEE--ecCcEEEEeCCC-Cce--eEEecCCCCCCCeEEEEEcc-CCCEEEEEecC-CeEEEEEcC--CCeeEEE
Q 004683 594 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS--TLELRCQ 664 (737)
Q Consensus 594 p~g~~l~~~--~dg~I~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~sp-~~~~l~sgs~d-g~I~vwd~~--~~~~~~~ 664 (737)
||++.++++ ..+.|+.|++.. +.. ...+. ..+..-.+++.+ +|++.+++..+ +.|..|+.. .+..+.+
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~r 306 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLR 306 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEE
Confidence 999988875 568999999863 332 22332 145677899999 59887766544 345445443 2444444
Q ss_pred Ee
Q 004683 665 IN 666 (737)
Q Consensus 665 ~~ 666 (737)
+.
T Consensus 307 I~ 308 (355)
T 3sre_A 307 IQ 308 (355)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.71 E-value=1.1 Score=45.98 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCEEEEEe--CCeEEEEECCC--CcEEEEecC-C-CCCe-EEEEEcCCC-eEEEEEC-C---------CeEEEEecCCCc
Q 004683 463 GSHLFSAS--GGKISIFSLET--FQTLATFAN-P-PPIA-TYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 524 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~--~~~~~~~~~-~-~~~v-~~~~~s~~~-~l~sgs~-d---------g~I~vwd~~~~~ 524 (737)
+..++.|+ ...+.+||+.+ .+. ..+.. . .... .+++. -++ .++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W-~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKW-TALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCE-EECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCe-eECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 55566666 46899999864 322 22221 1 1111 12222 256 5555554 2 368899998765
Q ss_pred EEEEEcCC-CcceEEEEEeCCCCEEEEEeCC
Q 004683 525 TKAKLKGH-QNRITCLAYSLSLNVLVSSGAD 554 (737)
Q Consensus 525 ~~~~l~~~-~~~v~~l~~sp~g~~l~s~s~d 554 (737)
-...-... .......+...+++.++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 33211111 1111111222567778888764
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.57 E-value=3.2 Score=44.85 Aligned_cols=188 Identities=10% Similarity=0.042 Sum_probs=111.8
Q ss_pred CCEEEEEe--CCeEEEEECCCCcEEEEec-CCCCCeEEEEEc--CCC-eEEEEECC-------CeE---------E---E
Q 004683 463 GSHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILL--PQD-LFAFGFDD-------SSI---------L---V 517 (737)
Q Consensus 463 ~~~l~s~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~-~l~sgs~d-------g~I---------~---v 517 (737)
|++++... +..|-..+++..++-+.+. .....+..+.+- |+. +++++++. |.. . .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~ 221 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNA 221 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEE
Confidence 77888887 6789999999998888776 445577788886 566 77777643 221 1 1
Q ss_pred EecCCCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCC---------------cEEEEeCCC-------Cce--ee--c-
Q 004683 518 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WKK--LC--S- 570 (737)
Q Consensus 518 wd~~~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg---------------~I~lwdl~~-------~~~--~~--~- 570 (737)
.|..+.+....+.- .+....+...++|.+.++.+.+. .+.++++.. ++. +. .
T Consensus 222 iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 222 IDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 12222222211110 12233445577788877765432 244554321 110 00 0
Q ss_pred -------------eeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCC------ce-------eEEec
Q 004683 571 -------------KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL------NH-------TSQLV 622 (737)
Q Consensus 571 -------------~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~------~~-------~~~~~ 622 (737)
..+.-++.. .....+.++|||++++++ -+.++.++|++.. +. +....
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~p-----ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVP-----KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEES-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred eEEccccccccCCceEEEEeCC-----CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 000111111 455678899999999985 6789999998731 11 22222
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 623 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 623 ~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
-.......+|.++|.-..+-.-|..|.-|++...
T Consensus 376 ---~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 ---LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp ---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ---CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2456778999999954445568999999998753
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.48 E-value=0.16 Score=47.97 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred CeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEE------EEEc--CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 004683 494 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK------AKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 564 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~------~~l~--~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~ 564 (737)
.+..++|+|+| +.++ .+|.++-.+..+.... ..+- +.. ...++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 66799999988 4444 6788777776552211 1110 111 1478899999988777 569988887643
Q ss_pred Cceeece-eeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCce-----eEEecCCCCCCCeEEEEEccC
Q 004683 565 WKKLCSK-FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-----TSQLVPDKMDLPITYATYSCD 638 (737)
Q Consensus 565 ~~~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~sp~ 638 (737)
....... .-..+-.+-- ..+..+.+.|+|...++. |+.++-....++.. ..+..+...-.....+.|+++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp STTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 2111100 0000111111 468899999999988888 88865444332210 011111111233445668888
Q ss_pred CCEEEEEecCCeE
Q 004683 639 GKCIYVSCKSGHV 651 (737)
Q Consensus 639 ~~~l~sgs~dg~I 651 (737)
+.+.++. +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8766665 6644
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=2.5 Score=42.61 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=109.1
Q ss_pred CeEEEEECCCCcEEEE-ecCCCCCeEEEEEcCCC-eEEEEEC----CC-------eEEEEecCCCcEEEEEcCCCc--ce
Q 004683 472 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAKLKGHQN--RI 536 (737)
Q Consensus 472 g~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~-~l~sgs~----dg-------~I~vwd~~~~~~~~~l~~~~~--~v 536 (737)
..+..||..+++.... +..............++ .++.|+. ++ .+..||..+++-.. +..... .-
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccc
Confidence 3588999988775442 22212222333344566 6666762 12 27788988765432 211111 11
Q ss_pred EEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE-e-c---
Q 004683 537 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E--- 604 (737)
Q Consensus 537 ~~l~~sp~g~~l~s~s~d-------g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-~-d--- 604 (737)
.+++.. +++.++.|+.+ ..+.+||..+.+-.. +..++.... .. +++. .+++.++.| . +
T Consensus 103 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVY----GH-NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE---ECCCSSCEE----SC-EEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE---CCCCCCccc----cc-EEEE-ECCEEEEEcCCCCCCC
Confidence 122222 56777777754 247888988743221 211222111 11 2222 355555553 2 2
Q ss_pred --CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEEcCCCeeEEEEecccccCCCCcc
Q 004683 605 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 677 (737)
Q Consensus 605 --g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~~~g~~~ 677 (737)
..+.+||..+.+-... ........-.+++. -++++++.|+.+ ..+.+||..+.+-... .. .+.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDL-APMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCCBS
T ss_pred ccceEEEEcCCCCEEEEC-CCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCcccc
Confidence 3599999987654322 11111111112222 366777777653 3577899887653221 11 1111111
Q ss_pred CceeeEEEEEccCCCCEEEEEECC--------------CcEEEEecCCCceeeeec
Q 004683 678 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 678 ~~v~~~~v~~sp~d~~~las~s~D--------------g~V~iWd~~~~~~~w~~~ 719 (737)
+ +++.. ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 1 22222 46777777754 35778888765 57764
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.40 E-value=2.6 Score=42.41 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCEEEEEe-C--------CeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-C-----CeEEEEecCCCcEE
Q 004683 463 GSHLFSAS-G--------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHCPCTKKTK 526 (737)
Q Consensus 463 ~~~l~s~s-d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-d-----g~I~vwd~~~~~~~ 526 (737)
+..++.|+ + ..+.+||..+.+....-..........+...++ .++.|+. + ..+.+||+.+.+-.
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 178 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK 178 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEE
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEE
Confidence 55566665 2 358999998765433211111111111222355 6666665 2 36899998876432
Q ss_pred EEEcCCC-cc-eEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCc
Q 004683 527 AKLKGHQ-NR-ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK 566 (737)
Q Consensus 527 ~~l~~~~-~~-v~~l~~sp~g~~l~s~s~dg-----~I~lwdl~~~~ 566 (737)
. +.... .. -.+++ .-+++.++.|+.++ .+.+||+.+..
T Consensus 179 ~-~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 179 E-LAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp E-CCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred E-CCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 2 21111 11 11222 22667778887654 48889998753
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.33 E-value=5.4 Score=45.75 Aligned_cols=321 Identities=14% Similarity=0.076 Sum_probs=165.4
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCCCceeeeecCCC--CCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 426 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~~~~~~~~l~~~--~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~ 426 (737)
.+|...+ |+. +.+..++... .....+.++.. .....|.++...+++..|-.|+. +-+..++..+
T Consensus 155 ~~g~lWi-gt~-~Gl~~~~~~~----~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~------- 220 (758)
T 3ott_A 155 KDNQIYV-GTY-NGLCRYIPSN----GKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST------- 220 (758)
T ss_dssp TTCCEEE-EET-TEEEEEETTT----TEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT-------
T ss_pred CCCCEEE-EeC-CCHhhCccCC----CceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC-------
Confidence 3455444 443 3466676553 33333322220 01234888888887765455553 3455565442
Q ss_pred cceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCeEEEEECCCCcEEEEecC-------CCCCeEEE
Q 004683 427 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN-------PPPIATYF 498 (737)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~-------~~~~v~~~ 498 (737)
+....... -....|.++... ...|..|.++-+.+++..++........ ....|.++
T Consensus 221 --------------~~~~~~~~--l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 221 --------------GQIKQTEA--FHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp --------------TEEEEEEE--EEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred --------------CeEEeccC--CCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence 11111000 012346777766 4445555555688888876654322211 12358888
Q ss_pred EEcCCCeEEEEECCCeEEEEecCCCcEEEEEc-------CCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004683 499 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 571 (737)
Q Consensus 499 ~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-------~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~ 571 (737)
....+|.|-.|+..| +.++... .. ...+. .....|.++.-..+|.+-+ |+.+ .+..++..++......
T Consensus 285 ~~D~~g~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~ 359 (758)
T 3ott_A 285 FADQEHNIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAI 359 (758)
T ss_dssp EECTTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCE
T ss_pred EEcCCCCEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeE
Confidence 888777555566666 5444322 21 11111 1134688888888886554 4554 4666766542111111
Q ss_pred eeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEec-CCC---CCCCeEEEEEccCCCEEEEEec
Q 004683 572 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDK---MDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~-~~~---h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
....-..........|.++.-.++|...+++ ++.+..||..+++...-.. ... ....|.++...++|.+ ..|+.
T Consensus 360 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-WigT~ 437 (758)
T 3ott_A 360 WYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-WISTC 437 (758)
T ss_dssp EECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE-EEEES
T ss_pred EeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE-EEEEC
Confidence 1110000000011468899888888766655 6689999998775432211 110 1345888887777664 44665
Q ss_pred CCeEEEEEcCCC-----eeE---EEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCc
Q 004683 648 SGHVKVFDTSTL-----ELR---CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 713 (737)
Q Consensus 648 dg~I~vwd~~~~-----~~~---~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~ 713 (737)
.+-|.++|..+. ... ..+... .|-.... +.++...+ ++.+.+.++..+.|..+|..+++
T Consensus 438 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~--i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 438 LGGIFVVDKHKLMQSTSGQYIAEQNYSVH----NGLSGMF--INQIIPDN-EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp SSCEEEEEHHHHHHCCSSEEECSEEECGG----GTCSCSC--EEEEEECT-TSCEEEEETTCSSEEEEETTTTE
T ss_pred CCceEEEccccccccCCcceecccccccc----cccccce--eeeEEEcC-CCCEEEEccCCCCcEEEeCCCCc
Confidence 566888886531 111 111111 1111222 34777777 67776644444568888887654
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.22 E-value=3 Score=44.65 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=63.3
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCC--CCCCCeEEEEEecC---CCEEEEE--e---
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPD---QIHLLSI--H--- 603 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~sp~---g~~l~~~--~--- 603 (737)
...+.++|.|+|+++++-...+.|++++..++... .+..+..... .+......|+|+|+ +..|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 45679999999987776544457888876544321 1221221100 01156789999996 5555543 2
Q ss_pred ---------cCcEEEEeCCCC-------ceeEE-ecCCCCCCCeEEEEEccCCCEEEEEec
Q 004683 604 ---------EGQIDVYEAPTL-------NHTSQ-LVPDKMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 604 ---------dg~I~iwd~~~~-------~~~~~-~~~~~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
...|.-|+...+ +.+.. +.. ........++|.|||.+.++.++
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 11221 221 12345789999999987776554
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.17 E-value=2.4 Score=42.70 Aligned_cols=191 Identities=8% Similarity=0.032 Sum_probs=93.1
Q ss_pred EEEEe-CCEEEEEe-C----C-------eEEEEECCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEECC-------Ce
Q 004683 458 CFALR-GSHLFSAS-G----G-------KISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDD-------SS 514 (737)
Q Consensus 458 ~v~~s-~~~l~s~s-d----g-------~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~sgs~d-------g~ 514 (737)
+++.. +..++.|+ . + .+.+||..+.+....-. ........+.+ ++ .++.|+.+ ..
T Consensus 51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccce
Confidence 33334 66677666 1 1 17788987765433211 11111122222 56 66666643 25
Q ss_pred EEEEecCCCcEEEEEcCCCcce--EEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeecccCCCCCCCC
Q 004683 515 ILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 586 (737)
Q Consensus 515 I~vwd~~~~~~~~~l~~~~~~v--~~l~~sp~g~~l~s~s~------dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~ 586 (737)
+.+||+.+.+-... .....+. .+++ ..+++.++.|+. -..+.+||+.+..-. .+..++... ..
T Consensus 129 ~~~yd~~~~~W~~~-~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEV-KNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKTPR----SM 199 (318)
T ss_dssp EEEEETTTTEEEEE-CCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSSCC----BS
T ss_pred EEEEeCCCCCEeEC-CCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCCCc----cc
Confidence 88899887653322 1111111 1122 246667777764 235899999875322 222122221 11
Q ss_pred eEEEEEecCCCEEEE-Eec-----CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC------------
Q 004683 587 VNHIQFHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------------ 648 (737)
Q Consensus 587 v~~l~~sp~g~~l~~-~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d------------ 648 (737)
. +++.. +++.++. |.+ ..+.+||..+.+-... ........-.+++ ..++++++.|+.+
T Consensus 200 ~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~ 275 (318)
T 2woz_A 200 F-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPT 275 (318)
T ss_dssp C-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCC
T ss_pred c-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccc
Confidence 1 22222 4555555 422 3578999987654322 1111111111222 2356777777653
Q ss_pred --CeEEEEEcCCCeeEE
Q 004683 649 --GHVKVFDTSTLELRC 663 (737)
Q Consensus 649 --g~I~vwd~~~~~~~~ 663 (737)
..+.+||..+.+=..
T Consensus 276 ~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 276 EVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp BCCCEEEEETTTTEEEE
T ss_pred eeeeEEEEeCCCCEehh
Confidence 458888988765433
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.87 E-value=4 Score=43.66 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCeEEEEECC-CeEEEEecCCCcEE--EEEcC------CCcceEEEEEeCC---CCEEEEEeC------
Q 004683 492 PPIATYFILLPQDLFAFGFDD-SSILVHCPCTKKTK--AKLKG------HQNRITCLAYSLS---LNVLVSSGA------ 553 (737)
Q Consensus 492 ~~~v~~~~~s~~~~l~sgs~d-g~I~vwd~~~~~~~--~~l~~------~~~~v~~l~~sp~---g~~l~s~s~------ 553 (737)
-...+.++|.|+|.++++... +.|++++..+++.. ..+.. .......++|+|+ +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999944444555 47998887656542 22221 2456779999995 445444432
Q ss_pred -------CCcEEEEeCCCC--ceeeceee-eecccCCCCCCCCeEEEEEecCCCEEEE
Q 004683 554 -------DAQLCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS 601 (737)
Q Consensus 554 -------dg~I~lwdl~~~--~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 601 (737)
...|.-|+.... .....+.+ ..++.... .....++|.|+|.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence 134555555332 11111122 11222211 34789999999987776
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.72 E-value=0.85 Score=47.12 Aligned_cols=110 Identities=10% Similarity=-0.003 Sum_probs=59.2
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC---CCEEEEE--e------
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLSI--H------ 603 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~--~------ 603 (737)
....++|.|+|+.++++...|.|++++... .. ...+..+..-..........++++|+ +..|.++ .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~--~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GL--SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EE--CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ce--eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 467899999998344556689999998543 11 01111111000000145789999996 4455542 2
Q ss_pred -cCcEEEEeCCCC--c--eeEEe-c--CC--CCCCCeEEEEEccCCCEEEEEec
Q 004683 604 -EGQIDVYEAPTL--N--HTSQL-V--PD--KMDLPITYATYSCDGKCIYVSCK 647 (737)
Q Consensus 604 -dg~I~iwd~~~~--~--~~~~~-~--~~--~h~~~v~~~~~sp~~~~l~sgs~ 647 (737)
...|..|+.... . ....+ . +. ........++|+|||.+.++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 235777776533 1 11111 1 10 01122457999999966555443
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.60 E-value=2.3 Score=43.62 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=83.8
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecCCCcEEE--EE----cCCCcceEEEEEeCC---CCEEEEE-e--C
Q 004683 487 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KL----KGHQNRITCLAYSLS---LNVLVSS-G--A 553 (737)
Q Consensus 487 ~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~~~~~~--~l----~~~~~~v~~l~~sp~---g~~l~s~-s--~ 553 (737)
.+...-...+.++|.|+| .+++--..|.|++++..+++... .+ .........++++|+ +..|... + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 343334567899999999 55554448999999876665422 22 123466889999995 3444432 2 3
Q ss_pred CCcEEEEeCCCCc-----eeecee-eeecccCCCCCCCCeEEEEEecCCCEEEE-Ee-------------cCcEEEEeCC
Q 004683 554 DAQLCVWDAVGWK-----KLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------------EGQIDVYEAP 613 (737)
Q Consensus 554 dg~I~lwdl~~~~-----~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~-------------dg~I~iwd~~ 613 (737)
++.|.-|.+..+. ...... +..++.... .....++|.|+|.+.++ +. .|.|.-++..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~---H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVI---HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSS---CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCC---ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 4556666655421 111111 122222111 23457999999987766 32 2455555553
Q ss_pred CCce--------eEEecCCCCCCCeEEEEEccCCCEEEE
Q 004683 614 TLNH--------TSQLVPDKMDLPITYATYSCDGKCIYV 644 (737)
Q Consensus 614 ~~~~--------~~~~~~~~h~~~v~~~~~sp~~~~l~s 644 (737)
++. ...+.. +| .....++|+|+|.+.++
T Consensus 183 -G~ip~~nPf~~~~i~a~-G~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 183 -GEPAPGNPFPGSPVYSY-GH-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp -SSBCTTCSSTTCCEEEB-CC-SBCCEEEECTTCCEEEE
T ss_pred -CCccCCCCCCCCeEEee-CC-CCcceEEECCCCCEEEE
Confidence 220 011111 22 33568999998776554
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.19 E-value=0.7 Score=43.71 Aligned_cols=143 Identities=8% Similarity=-0.035 Sum_probs=79.8
Q ss_pred eEEEEECCCeEEEEecCCCc------EEEEEcC-CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeee-ec
Q 004683 505 LFAFGFDDSSILVHCPCTKK------TKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SF 576 (737)
Q Consensus 505 ~l~sgs~dg~I~vwd~~~~~------~~~~l~~-~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~-~~ 576 (737)
+|++...| +|+.=...++. ....+.. -=..+..++|+|+|.+.++ .+|.++-.+..+.......... .+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 56666667 66554444333 1122211 1236779999999986666 6777766665442111000000 01
Q ss_pred cc-CCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeE-----EecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 004683 577 QT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 577 ~~-~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
-. +. ..-..+.|.|+|.+.++ .||.|+-++-.+...-. +..+..-=..+..+.|.|+|.+.++. |+.
T Consensus 83 G~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 83 GNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp ECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred ccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 00 11 12368999999988887 77999888864321110 11110012467899999999877776 787
Q ss_pred EEEEEcC
Q 004683 651 VKVFDTS 657 (737)
Q Consensus 651 I~vwd~~ 657 (737)
++-+...
T Consensus 156 lyr~~~P 162 (236)
T 1tl2_A 156 FYKALPP 162 (236)
T ss_dssp EEEECCC
T ss_pred EEecCCC
Confidence 6544333
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.72 E-value=3.3 Score=47.12 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=102.7
Q ss_pred CCEEEEEe-C----CeEEEEECCCCcEEEEe-c-----CCCCC-eEEEEEcC-CC-eEEEEECCC------eEEEEecCC
Q 004683 463 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPPI-ATYFILLP-QD-LFAFGFDDS------SILVHCPCT 522 (737)
Q Consensus 463 ~~~l~s~s-d----g~i~vwd~~~~~~~~~~-~-----~~~~~-v~~~~~s~-~~-~l~sgs~dg------~I~vwd~~~ 522 (737)
+..++.|+ + ..+.+||..+++....- . ..... -.+++..+ ++ .++.|+.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66677776 3 46889999877654433 1 11111 12333333 66 667776543 588999887
Q ss_pred CcEEEEEcCCC-cceEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC-CCE
Q 004683 523 KKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIH 598 (737)
Q Consensus 523 ~~~~~~l~~~~-~~v~~l~~sp~g~~l~s~s~dg--~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~ 598 (737)
.+-...-.... ..-.+++.-.+++.++.|+.++ .+.+||..+..-.........+... .....+.+..+ ++.
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQG 553 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTEE
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCEE
Confidence 64322111011 1112233334788888888755 6899999875422211110122222 12234555655 555
Q ss_pred EEEE-e--c-----CcEEEEeCCCCce-----eEEecC-CCCCCCeEEEEEccCCCEEEEEec--------CCeEEEEEc
Q 004683 599 LLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP-DKMDLPITYATYSCDGKCIYVSCK--------SGHVKVFDT 656 (737)
Q Consensus 599 l~~~-~--d-----g~I~iwd~~~~~~-----~~~~~~-~~h~~~v~~~~~sp~~~~l~sgs~--------dg~I~vwd~ 656 (737)
++.| . + +.+.+||+.+... ...+.. ......-.+++...++++++.|+. ...|.+||.
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 5554 3 2 3589999987761 112211 001111122333344777777774 356999999
Q ss_pred CCCeeE
Q 004683 657 STLELR 662 (737)
Q Consensus 657 ~~~~~~ 662 (737)
.+.+-.
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 987643
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.19 E-value=7.6 Score=38.84 Aligned_cols=170 Identities=10% Similarity=0.103 Sum_probs=95.9
Q ss_pred EeCCEEEEEe---CCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEEC-C-------------CeEEEEecCC
Q 004683 461 LRGSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-------------SSILVHCPCT 522 (737)
Q Consensus 461 ~s~~~l~s~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs~-d-------------g~I~vwd~~~ 522 (737)
+.|++++... ++.|+..+.+... ...+... .+--++++| .|+-+.. + ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4466666554 4677777765333 3333221 133457788 5554443 2 4678888876
Q ss_pred CcEEEEEcCCCcceEEEEEeCCCCEEEEEe--C--CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE
Q 004683 523 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG--A--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 598 (737)
Q Consensus 523 ~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s--~--dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 598 (737)
++... +.. .. +..|++++++|+-.. . +..|+..++.... ...+... .+ .+++|+++.
T Consensus 98 ~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~------~~~lt~~------~~--~~~~~~g~~ 158 (302)
T 3s25_A 98 HGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE------KKKIKNH------YL--FTCNTSDRY 158 (302)
T ss_dssp CCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC------CEEEESS------CC--CCSEEETTE
T ss_pred CcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC------eEEEeCC------Cc--eEeeEECCE
Confidence 65333 321 11 236788899988776 2 3456566666422 1112221 12 456788988
Q ss_pred EEEEe--cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecC--CeEEEEEcCCCe
Q 004683 599 LLSIH--EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLE 660 (737)
Q Consensus 599 l~~~~--dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~d--g~I~vwd~~~~~ 660 (737)
|+-.. ...|++.++..+.....+. .... ..++|++.+|+-...+ ..|..-++..+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 88643 5688998986655433332 2222 3456999988866543 356666666554
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.90 E-value=3.4 Score=41.02 Aligned_cols=222 Identities=12% Similarity=0.034 Sum_probs=114.8
Q ss_pred CeEEEEEe-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCCCcEEEEEcCCC
Q 004683 455 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ 533 (737)
Q Consensus 455 ~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~~~ 533 (737)
.|..++.. ...++.. ||.|+.|-......+..-......|..++......++. . ||.|+.|-....-.+..-..-.
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccC
Confidence 46666665 3344444 99999997654221111011123566676654443333 4 8999999755321111000113
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCC
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 613 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~ 613 (737)
..|..++...+. .+.-. ||.|+.|-....... .+ +.... ..|..++...+.. ++.. ||.|+.|-..
T Consensus 102 ~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gql---g~---~~~~~---~~i~~i~~G~~~~-~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 102 SGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQT---TV---PAEAQ---SGVTALDGGVYTA-LAVK-NGGVIAWGDN 167 (282)
T ss_dssp SSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTT---SC---CGGGG---SSEEEEEECSSEE-EEEE-TTEEEEEECC
T ss_pred CCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcC---CC---CccCC---CCeEEEEcccCEE-EEEE-CCEEEEecCC
Confidence 467777766543 33334 999999976542111 01 11111 4577776654432 2234 8999999765
Q ss_pred CCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCC
Q 004683 614 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 693 (737)
Q Consensus 614 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 693 (737)
....+.. +..-...|..++...+... +. .||.|+.|-....-.+.. +.. . ... +..++... ..
T Consensus 168 ~~gqlg~--p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~-p~~-----~--~~~--v~~i~~G~--~h 230 (282)
T 3qhy_B 168 YFGQTTV--PAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTV-PTE-----A--LSG--VSAIASGE--WY 230 (282)
T ss_dssp TTSTTSC--CGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCC-CGG-----G--GSS--CCEEEECS--SC
T ss_pred CCCCCCC--ceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCC-Ccc-----c--CCC--ceEEEcCC--CE
Confidence 4222111 0001345777776544333 33 599999998765322211 100 0 112 33666554 23
Q ss_pred EEEEEECCCcEEEEecCCC
Q 004683 694 RIALGLTNGRVHVIEPLES 712 (737)
Q Consensus 694 ~las~s~Dg~V~iWd~~~~ 712 (737)
.+|.. ||.|..|--...
T Consensus 231 ~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 231 SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp EEEEE--TTEEEEESTTCC
T ss_pred EEEEE--CCEEEEecCCCC
Confidence 34433 999999987654
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.48 E-value=9.5 Score=38.12 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=92.5
Q ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEE----CCCeEEEEecCCCcEEEEEcCCCcceEEEEEeCCCCE
Q 004683 473 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 547 (737)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~l~sgs----~dg~I~vwd~~~~~~~~~l~~~~~~v~~l~~sp~g~~ 547 (737)
.|+..++..++....... . +..|++++ .|+-.. .+..|...++.... ...+..+.. .+++|+++.
T Consensus 89 ~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 577777776553332222 1 23677788 666555 34467777776443 344443322 456788888
Q ss_pred EEEEeC-CCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEE--ec-CcEEEEeCCCCceeEEecC
Q 004683 548 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 548 l~s~s~-dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~--~d-g~I~iwd~~~~~~~~~~~~ 623 (737)
|+-.+. ...|.+.++.++.. +. +..+ .. ...++|++.+|+-+ .+ ..|..-++.... ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence 887665 57888888877431 11 2222 22 23466999998864 22 367777776444 33442
Q ss_pred CCCCCCeEEEEEccCCCEEEEEec--CCeEEEEEcCCCe
Q 004683 624 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE 660 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sgs~--dg~I~vwd~~~~~ 660 (737)
...+ ..|+|++++|+-++. .+.|..-++....
T Consensus 224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2233 348888998886533 3567777766543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.25 E-value=15 Score=41.66 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=102.0
Q ss_pred CCC-eEEEEECC----CeEEEEecCCCcEEEEE-c-----CC-CcceEEEEEeC-CCCEEEEEeCCC------cEEEEeC
Q 004683 502 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K-----GH-QNRITCLAYSL-SLNVLVSSGADA------QLCVWDA 562 (737)
Q Consensus 502 ~~~-~l~sgs~d----g~I~vwd~~~~~~~~~l-~-----~~-~~~v~~l~~sp-~g~~l~s~s~dg------~I~lwdl 562 (737)
.++ .++.|+.+ ..+.+||..+++-...- . .. ...-.+++..+ +++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 344 55566543 36888898877543322 1 01 11112333443 777778877543 5788998
Q ss_pred CCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-Eec--CcEEEEeCCCCceeEEec---CCCCCCCeEEEEEc
Q 004683 563 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS 636 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~d--g~I~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s 636 (737)
.+..-. .+..++... .-.+++.-.+++.++. |.+ +.+.+||..+..-...-. ..........+.+.
T Consensus 476 ~t~~W~---~~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREWS---MIKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEEE---ECCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcEE---ECCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 874322 122122221 1123333236776666 332 279999998765432211 00011122335555
Q ss_pred cC-CCEEEEEec--C-----CeEEEEEcCCCee-----EEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECC--
Q 004683 637 CD-GKCIYVSCK--S-----GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-- 701 (737)
Q Consensus 637 p~-~~~l~sgs~--d-----g~I~vwd~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-- 701 (737)
.+ +++++.|+. + +.+.+||+.+..- -..+...... +. ....++.+. ++.+++.||.+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R----~~~~~~~~~--~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QR----YGSQIKYIT--PRKLLIVGGTSPS 619 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CC----BSCEEEEEE--TTEEEEECCBCSS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--Cc----ccceEEEeC--CCEEEEECCccCC
Confidence 55 667777765 2 4689999988761 1111110001 11 111123332 36788888743
Q ss_pred ------CcEEEEecCCCceeeee
Q 004683 702 ------GRVHVIEPLESEVEWGK 718 (737)
Q Consensus 702 ------g~V~iWd~~~~~~~w~~ 718 (737)
..|.+||+.+. .|..
T Consensus 620 ~~~~~~~~v~~yd~~t~--~W~~ 640 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE--TLTS 640 (695)
T ss_dssp CCCCTTTSEEEEETTTT--EEEE
T ss_pred CCCCCCCeEEEEECCCC--eEEE
Confidence 46899999876 4764
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.88 E-value=11 Score=37.08 Aligned_cols=182 Identities=9% Similarity=-0.034 Sum_probs=95.9
Q ss_pred CeEEEEEe-CCEEEEEeCCeEEEEECCCCcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEecCC-CcEEEEEcCC
Q 004683 455 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGH 532 (737)
Q Consensus 455 ~V~~v~~s-~~~l~s~sdg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~~ 532 (737)
.|..++.. ...++. .||.|+.|-......+..-..-...|..++..... .+.-. ||.|+.|-... ++. ..-...
T Consensus 64 ~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gql-g~~~~~ 139 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQT-TVPAEA 139 (282)
T ss_dssp CCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTT-SCCGGG
T ss_pred CEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcC-CCCccC
Confidence 45556655 334444 48999999765421111101112357777765444 23334 99999997553 221 111112
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeC
Q 004683 533 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 612 (737)
Q Consensus 533 ~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~ 612 (737)
...|..++...+...+ -. ||.|+.|-........ .+.. .. ..|..++...+... +. .+|.|+.|-.
T Consensus 140 ~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-~p~~-----~~---~~v~~i~~G~~hs~-al-~~G~v~~wG~ 205 (282)
T 3qhy_B 140 QSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-VPAE-----AQ---SGVDDVAGGIFHSL-AL-KDGKVIAWGD 205 (282)
T ss_dssp GSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-CCGG-----GG---SSEEEEEECSSEEE-EE-ETTEEEEEEC
T ss_pred CCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-Ccee-----cC---CCeEEEEecCCEEE-EE-ECCeEEEEEC
Confidence 3456666655433222 33 7999999765421110 1111 11 46777777655443 34 7999999976
Q ss_pred CCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCC
Q 004683 613 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 659 (737)
Q Consensus 613 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~ 659 (737)
.....+..- . .....|..++...+...+++ ||.|+.|-....
T Consensus 206 n~~gqlg~p-~-~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 206 NRYKQTTVP-T-EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CTTSTTCCC-G-GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCC-c-ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 542211100 0 01345777776554433333 999999987654
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.39 E-value=3.5 Score=44.56 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=75.0
Q ss_pred eEEEEecCC----CcEEEEEcCCCcceEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCce--------eeceeeeecccCC
Q 004683 514 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKK--------LCSKFLHSFQTGL 580 (737)
Q Consensus 514 ~I~vwd~~~----~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~-dg~I~lwdl~~~~~--------~~~~~~~~~~~~~ 580 (737)
.|.+.|.+. +..+..+-.-......+.++|||+++++++. +.++.++|++.-.. ...........|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 366777655 2222222122344567899999999887765 78899999874211 000011112223
Q ss_pred CCCCCCeEEEEEecCCCEEEEE--ecCcEEEEeCCCC----------ceeEEecCCCCCCCeEEEEE------ccCCCEE
Q 004683 581 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI 642 (737)
Q Consensus 581 ~~~~~~v~~l~~sp~g~~l~~~--~dg~I~iwd~~~~----------~~~~~~~~~~h~~~v~~~~~------sp~~~~l 642 (737)
......+|.++| ...++ -|..|.-|++... ..+..+..+ ..+-.+.- .|||+||
T Consensus 378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~---YqpGH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH---YQPGHLHASLCETNEADGKWL 449 (638)
T ss_dssp ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS---SCEEEEEETTTTSTTCCSCEE
T ss_pred ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc---cCCcccccCCCccCCCCccEE
Confidence 457789999999 45554 8999999998642 344444331 22333333 4789999
Q ss_pred EEEec
Q 004683 643 YVSCK 647 (737)
Q Consensus 643 ~sgs~ 647 (737)
++...
T Consensus 450 v~lnK 454 (638)
T 3sbq_A 450 VALSK 454 (638)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 98763
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.17 E-value=9.9 Score=39.27 Aligned_cols=151 Identities=12% Similarity=0.090 Sum_probs=77.5
Q ss_pred cEEEEeCCCC--ceeeceeee-ecccCCCCCCCCeEEEEEe---cC----CCEEEEE--ecCcEEEEeCCCCceeEEec-
Q 004683 556 QLCVWDAVGW--KKLCSKFLH-SFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV- 622 (737)
Q Consensus 556 ~I~lwdl~~~--~~~~~~~~~-~~~~~~~~~~~~v~~l~~s---p~----g~~l~~~--~dg~I~iwd~~~~~~~~~~~- 622 (737)
.|.+||+.++ +......+. ..... . ..+..+++. |. +.++..+ ..+.|.|+|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~-~---S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK-P---TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC-G---GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc-C---CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 4556777775 444333221 01111 1 567888888 32 3444444 56789999999887655441
Q ss_pred ---CCCC------------CCCeEEEEEccC----CCEEEEEecCCeEEEEEcCCCeeEEEEecccccCCCCccCceeeE
Q 004683 623 ---PDKM------------DLPITYATYSCD----GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 683 (737)
Q Consensus 623 ---~~~h------------~~~v~~~~~sp~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 683 (737)
+... ...+..+++||+ +++|+-..-.+ -++|.+.+.-+...-....+...|.........
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 1100 236788888887 67776555443 123333211000000000000112111011223
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
..+..+.+|.++++--..+.|..|+...
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5566533677777777888999999875
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.79 E-value=21 Score=38.09 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=62.6
Q ss_pred ceEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeecc----cCC-CCCCCCeEEEEEecC----CCEEEE-Ee
Q 004683 535 RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ----TGL-VPETTIVNHIQFHPD----QIHLLS-IH 603 (737)
Q Consensus 535 ~v~~l~~sp~g~-~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~----~~~-~~~~~~v~~l~~sp~----g~~l~~-~~ 603 (737)
..+.|+|.|+|. .++++...|.|++++..... . ...+..+. .+. .........|+++|+ +.+.++ +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-F-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-C-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-e-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 467899999996 45566788999999754321 0 11111111 110 000146789999997 333333 32
Q ss_pred --c----------CcEEEEeCCC----------CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004683 604 --E----------GQIDVYEAPT----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 649 (737)
Q Consensus 604 --d----------g~I~iwd~~~----------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg 649 (737)
+ ..|.-|.+.. .+.+..+........-..+.|.|||.+.++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1455566542 12333332111234567899999998777766543
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.62 E-value=51 Score=33.90 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=87.3
Q ss_pred CeEEEEECCCC--cEEEEecCC------CCCeEEEEEc---CC----C-eEEEEE-CCCeEEEEecCCCcEEEEEcCCCc
Q 004683 472 GKISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQN 534 (737)
Q Consensus 472 g~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~s---~~----~-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~~~ 534 (737)
-.|.+||+.++ +.++++.-. ...+..+.+. |+ + ++..+. ..+.|.|+|+.+++..+.+. ..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC
Confidence 36778999998 888887532 2356777776 22 3 444443 56789999999998776553 21
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecC----CCEEEEEecCcEEEE
Q 004683 535 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVY 610 (737)
Q Consensus 535 ~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~~~~dg~I~iw 610 (737)
|.|+.....+. +|.- ++ +. ..+..|+++|+ ++.|.-+.=..-++|
T Consensus 201 ------~~pd~~~~~~i--~G~~---------------~~-~~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKE---------------YE-FK-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp ------GSCCSCEEEEE--TTEE---------------EE-EC-------CCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred ------CccccCcceEE--CCEE---------------eE-ec-------cCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 34441111111 1211 11 11 35888999987 677776422222333
Q ss_pred eCC-----CC---ceeEEecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEEcCC
Q 004683 611 EAP-----TL---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 611 d~~-----~~---~~~~~~~~~~h~~~v~~~~~s-p~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.+. .. ..+..+-..+....-...++. .+|.+.++--+.+.|..|+..+
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 322 11 122222111111333456675 5787777878889999999876
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.81 E-value=7.2 Score=46.01 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecc
Q 004683 627 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 668 (737)
Q Consensus 627 ~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 668 (737)
...+.+++..++..++++-+.|+++|+|++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345777888889999999999999999999999998887643
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.35 E-value=45 Score=35.41 Aligned_cols=109 Identities=7% Similarity=-0.087 Sum_probs=61.4
Q ss_pred CCeEEEEEecCCC--EEEEEecCcEEEEeCCCC---ceeEEecC---C----CCCCCeEEEEEccC----CCEEEEEec-
Q 004683 585 TIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL---NHTSQLVP---D----KMDLPITYATYSCD----GKCIYVSCK- 647 (737)
Q Consensus 585 ~~v~~l~~sp~g~--~l~~~~dg~I~iwd~~~~---~~~~~~~~---~----~h~~~v~~~~~sp~----~~~l~sgs~- 647 (737)
...+.|+|.|+|. ++++-..|.|++++.... ..+..+.. . ........++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3577999999995 777778899999975422 12222210 0 01356789999996 333333222
Q ss_pred -C----------CeEEEEEcCCC----------eeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEECCC
Q 004683 648 -S----------GHVKVFDTSTL----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 702 (737)
Q Consensus 648 -d----------g~I~vwd~~~~----------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 702 (737)
+ ..|.-|.+..+ +.+..+.. ..+ .+.. -.++|.| |+.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~--~H~g--~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHR--KHLG--GQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSS--SSCE--EEEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCC--cccC--CcEeECC-CCcEEEEeCCCC
Confidence 1 14444665421 12222211 112 2223 3899999 888877776654
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.69 E-value=73 Score=31.02 Aligned_cols=193 Identities=10% Similarity=0.030 Sum_probs=101.1
Q ss_pred eEEEEECCCeEEEE---ecCCCcEEEEEcCCCcceEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceee--ceeeeeccc
Q 004683 505 LFAFGFDDSSILVH---CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC--SKFLHSFQT 578 (737)
Q Consensus 505 ~l~sgs~dg~I~vw---d~~~~~~~~~l~~~~~~v~~l~~sp-~g~~l~s~s~dg~I~lwdl~~~~~~~--~~~~~~~~~ 578 (737)
.++.-+.+|.++-. ++..+.....+. ....|..+.... +..+++..+.+|.++-..+..-. .. ....-.+..
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke 114 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE 114 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC
Confidence 55556667766543 322221100132 345566654421 46789999999999998775521 11 111111222
Q ss_pred CCCCCCCCeEEEEEecCCCEEE-EEecCcEEEEeCCCC-------ceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 004683 579 GLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 650 (737)
Q Consensus 579 ~~~~~~~~v~~l~~sp~g~~l~-~~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~ 650 (737)
+ ..+..+....+...++ .+..|.+..++...- .-+.-+... ....|.++...+++..++..+..|.
T Consensus 115 g-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~ 188 (276)
T 3no0_A 115 G-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGR 188 (276)
T ss_dssp T-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSC
T ss_pred C-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCc
Confidence 2 4566666555554555 478898888875321 111112111 2456777666666778889999999
Q ss_pred EEEEEcCCCeeEEEEe-cccccCCCCccCceeeEEEEEccCCCCEEEEEECCCcEEE--EecCC
Q 004683 651 VKVFDTSTLELRCQIN-LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 711 (737)
Q Consensus 651 I~vwd~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~i--Wd~~~ 711 (737)
++...+..-....+-. +...... .+.+- .+.... +...++..+.+|.+.. +++..
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVSGT---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECCCS---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEEcC---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 9888875332211100 0000001 22222 232222 3456777788888877 77653
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.76 E-value=93 Score=31.81 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=100.4
Q ss_pred CeEEEEEcC-C-C-eEEEEECCCeEEEEecCCCcEEEEEcC-------------------CCcceEEEEEeCC-CCEEEE
Q 004683 494 IATYFILLP-Q-D-LFAFGFDDSSILVHCPCTKKTKAKLKG-------------------HQNRITCLAYSLS-LNVLVS 550 (737)
Q Consensus 494 ~v~~~~~s~-~-~-~l~sgs~dg~I~vwd~~~~~~~~~l~~-------------------~~~~v~~l~~sp~-g~~l~s 550 (737)
.|.++++.| + . .+.+++..+.|...+ ..|+.-..+.. ....+.++.++|. ...+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 477888886 2 4 666666666666554 22333222211 1235788999883 344555
Q ss_pred EeCCCcEEEEeCCCCceeeceeeee-cccCCCC-----CCCCeEEEEEecC-CCEEEEEecCcEEEEeCCCCceeEEecC
Q 004683 551 SGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVP-----ETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLVP 623 (737)
Q Consensus 551 ~s~dg~I~lwdl~~~~~~~~~~~~~-~~~~~~~-----~~~~v~~l~~sp~-g~~l~~~~dg~I~iwd~~~~~~~~~~~~ 623 (737)
+..++.|...+-.. .. ...+.. ....+.+ ....+.+++++|. ...+.++..+.|...+- .++....+..
T Consensus 195 g~~~ggl~~s~DgG-~t--W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~ 270 (394)
T 3b7f_A 195 GMSSGGVFESTDAG-TD--WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGD 270 (394)
T ss_dssp EEETBEEEEESSTT-SS--CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGG
T ss_pred EECCCCEEEECCCC-CC--ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCC
Confidence 55455444432221 10 111110 0000000 0024889999986 35566655555655543 2333323221
Q ss_pred CCCC---CCeEEEEEcc-CCCEEEEEec-----------CCeEEEEEcCC-CeeEEEEecccccCCCCccCceeeEEEEE
Q 004683 624 DKMD---LPITYATYSC-DGKCIYVSCK-----------SGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAA 687 (737)
Q Consensus 624 ~~h~---~~v~~~~~sp-~~~~l~sgs~-----------dg~I~vwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 687 (737)
.... ..+.+++++| +...|+++.. ++...+|.... |+.-..+. . ..+....-..+...++++
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~-~-glp~~~~~~~~~~~~~~~ 348 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD-R-GLPTDQAWLTVKRQAMTA 348 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC-B-TSCCSSCCCCCCTBSEEE
T ss_pred CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC-C-CCCCccccceEEEEEEEE
Confidence 0011 3466788876 3344554432 33345565554 23222221 1 011100000111135788
Q ss_pred ccCCCCEEEEEECCCcEEEEecCCCceeeeec
Q 004683 688 HPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 688 sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~ 719 (737)
+|.++..|..++.++.| |.-..+...|...
T Consensus 349 ~p~~~~~l~~g~~~g~l--~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 349 DAHAPVGVYFGTTGGEI--WASADEGEHWQCI 378 (394)
T ss_dssp CCSSSCCEEEECTTSCE--EEESSTTSBCEEE
T ss_pred CCCCCCEEEEEeCCCeE--EEECCCCCCceEc
Confidence 88555556666666654 4444554567653
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=70.42 E-value=1.4e+02 Score=33.48 Aligned_cols=180 Identities=13% Similarity=0.030 Sum_probs=91.4
Q ss_pred CeEEEEECCCC--cEEEEecCCCCCe-EEEEEcCCC-e-----EEEEECC---CeEEEEecCC--CcEEEEEcCCCcceE
Q 004683 472 GKISIFSLETF--QTLATFANPPPIA-TYFILLPQD-L-----FAFGFDD---SSILVHCPCT--KKTKAKLKGHQNRIT 537 (737)
Q Consensus 472 g~i~vwd~~~~--~~~~~~~~~~~~v-~~~~~s~~~-~-----l~sgs~d---g~I~vwd~~~--~~~~~~l~~~~~~v~ 537 (737)
..|+.|.+-+. +-...+.+....+ .....++++ . +++.+.+ ..+.+.|... ++. ..+..... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~--~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD--A 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--C
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--c
Confidence 46888988664 2344555444333 244556666 3 4443322 3566666553 332 22321121 1
Q ss_pred EEEEeCCCCEEEEE----------eCCCcEEEEeCCCCceee--ceeeee-cccCCCCCCCCeEEEEEecCCCEEEE-Ee
Q 004683 538 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKKLC--SKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IH 603 (737)
Q Consensus 538 ~l~~sp~g~~l~s~----------s~dg~I~lwdl~~~~~~~--~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~-~~ 603 (737)
.+..+.++.+++.. ...+.|...|+.+..... ....+. +..... ..+..+.+..+. .+++ ..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-l~~~~~~ 368 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN---EVFNFISTTKDR-VFLATYD 368 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT---EEEEEEEECSSC-EEEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC---CeEEEEEEECCE-EEEEEEE
Confidence 12344455555532 245678888887632100 001111 112111 467788888763 4444 45
Q ss_pred cC--cEEEEeCCCCc-eeEE-ecCCCCCCCeEEEEEccCCCE-EEEEec---CCeEEEEEcCCCe
Q 004683 604 EG--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKC-IYVSCK---SGHVKVFDTSTLE 660 (737)
Q Consensus 604 dg--~I~iwd~~~~~-~~~~-~~~~~h~~~v~~~~~sp~~~~-l~sgs~---dg~I~vwd~~~~~ 660 (737)
++ .+.++|+.++. .... +..+ ..+.+.....++++.. +++.+. -+.++.+|+. ++
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred CCEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 54 57888876664 2333 3222 1345766677777654 444433 3788888887 54
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.77 E-value=63 Score=37.93 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=32.9
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004683 534 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 573 (737)
Q Consensus 534 ~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~~~~ 573 (737)
..+.+++..++..++++.+.|+++|+|++.++.+.....+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567788888889999999999999999999876655443
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.68 E-value=1.1e+02 Score=30.64 Aligned_cols=150 Identities=10% Similarity=0.036 Sum_probs=85.1
Q ss_pred CC-eEEEEECCCeEEEEecCC-------CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCC--CCce----e
Q 004683 503 QD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--GWKK----L 568 (737)
Q Consensus 503 ~~-~l~sgs~dg~I~vwd~~~-------~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~--~~~~----~ 568 (737)
+. .++..+.+|.|+-..+.. |.....++. ...+..+........++..+..|.+..+... .-.. .
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 45 899999999999887543 111122333 3445555555556678888999998888776 3111 1
Q ss_pred eceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-------ceeEEecCCCCCCCeEEEEEccCCC
Q 004683 569 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGK 640 (737)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~sp~~~ 640 (737)
.....-.+..+ ..|.++...+++.+++. +..|.++.-.+... +-+..+........+..+....+..
T Consensus 187 ~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 187 SGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp BCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC
T ss_pred CCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc
Confidence 11111112222 45777666655555554 78888888775422 2222222211133455555444455
Q ss_pred EEEEEecCCeEEEEEcCC
Q 004683 641 CIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 641 ~l~sgs~dg~I~vwd~~~ 658 (737)
.++..+.+|.+.-++...
T Consensus 262 ~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEGGGCEEEEEGGG
T ss_pred cEEEEcCCCeEEEEehhh
Confidence 666677777777776654
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=65.85 E-value=1.8e+02 Score=32.76 Aligned_cols=191 Identities=8% Similarity=-0.082 Sum_probs=97.3
Q ss_pred EcCCC--eEEEEECCC----eEEEEecCCCcEEE-EEc-CCCc------ceEEEEEeCCCCEEEEEeC-----------C
Q 004683 500 LLPQD--LFAFGFDDS----SILVHCPCTKKTKA-KLK-GHQN------RITCLAYSLSLNVLVSSGA-----------D 554 (737)
Q Consensus 500 ~s~~~--~l~sgs~dg----~I~vwd~~~~~~~~-~l~-~~~~------~v~~l~~sp~g~~l~s~s~-----------d 554 (737)
++|++ .+++-|..| .++++|+.+++.+. .+. .-++ ....++|..+. .+..++. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 67888 444444444 79999999987652 111 0000 11344787443 3433321 2
Q ss_pred CcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCCCE----EEE--E---ecCcEEEEeCCC--CceeEEecC
Q 004683 555 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS--I---HEGQIDVYEAPT--LNHTSQLVP 623 (737)
Q Consensus 555 g~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~----l~~--~---~dg~I~iwd~~~--~~~~~~~~~ 623 (737)
..|+.|.+-+..... .. +..+... ..-.+...++++++ ++. + ....+++.|... ++.. .+..
T Consensus 216 ~~v~~~~~Gt~~~~~-~~---v~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 288 (711)
T 4hvt_A 216 NSLYIWKRGESIEKA-KK---LFEVPKE--YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINM 288 (711)
T ss_dssp CEEEEEETTSCGGGC-EE---EEECCTT--SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCS
T ss_pred CEEEEEECCCChHHC-eE---EeccCCC--ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eeec
Confidence 458888776532111 11 1222211 22334556677663 333 2 124577777653 4322 3322
Q ss_pred CCCCCCeEEEEEccCCCEEEEE----------ecCCeEEEEEcCCCe-------eEEE-EecccccCCCCccCceeeEEE
Q 004683 624 DKMDLPITYATYSCDGKCIYVS----------CKSGHVKVFDTSTLE-------LRCQ-INLTAYAQPGTISLELYPLVI 685 (737)
Q Consensus 624 ~~h~~~v~~~~~sp~~~~l~sg----------s~dg~I~vwd~~~~~-------~~~~-~~~~~~~~~g~~~~~v~~~~v 685 (737)
+. .. .+..+.++.+++.. ...+.|.+.++.++. .... +.+ .....+..+
T Consensus 289 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~ 355 (711)
T 4hvt_A 289 PS-DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP---------TANEVFNFI 355 (711)
T ss_dssp CT-TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC---------CTTEEEEEE
T ss_pred CC-cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC---------CCCCeEEEE
Confidence 11 11 23344566665532 235778888887642 1112 221 223445588
Q ss_pred EEccCCCCEEEEEECCCc--EEEEecCCCc
Q 004683 686 AAHPLEPNRIALGLTNGR--VHVIEPLESE 713 (737)
Q Consensus 686 ~~sp~d~~~las~s~Dg~--V~iWd~~~~~ 713 (737)
.|.. + .++++...++. |.++++.+++
T Consensus 356 ~~~~-~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 356 STTK-D-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EECS-S-CEEEEEEETTEEEEEEECEETTE
T ss_pred EEEC-C-EEEEEEEECCEEEEEEEECCCCc
Confidence 8887 3 68888888874 6677766553
No 364
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=65.78 E-value=7.1 Score=30.18 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=35.0
Q ss_pred CchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhhhHHHHHHHHhhcccc
Q 004683 122 NNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVF 172 (737)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~ 172 (737)
-+.|++.+++. .+-.-+.-||-.||+=+||+.|+..++.|+|..
T Consensus 5 ~N~~~k~~~~s-------~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 5 VNESLKKFLNT-------KDGRLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp CCHHHHHHHTS-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHcC-------cccHHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35566666664 344557789999999999999999999999995
No 365
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=62.51 E-value=48 Score=29.17 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=8.2
Q ss_pred hcCChHHHHHHHhh
Q 004683 183 TSGEWDNAEKYLSA 196 (737)
Q Consensus 183 ~~G~w~~~~~~l~~ 196 (737)
..|++++|+..++.
T Consensus 153 ~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 153 GKGLRDEAVKYFKK 166 (184)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 45666666665543
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.49 E-value=65 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=27.9
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCeeEEEEec
Q 004683 637 CDGKCIYVSCKSGHVKVFDTSTLELRCQINL 667 (737)
Q Consensus 637 p~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 667 (737)
.+..++++-+.|.++|+|++.+++++.....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999999888775
No 367
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=62.30 E-value=73 Score=27.39 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=37.3
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++........+. ...++ ..=.-+...++..+|++.+.+-++..+ .+...+..++.++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD--VDVAL----HLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCccC--hHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 377888887776665543322 12221 122223456777778888877776544 5555665555554
No 368
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=57.95 E-value=88 Score=28.92 Aligned_cols=66 Identities=23% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++.....+..+. ...++. .=.-+...++..+|++++.+-++..+ .+...+..++.++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~--~~~~~~----la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSS--ADAHAA----LAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCCh--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 588999998887766543322 122221 11224557888889999988887665 5666777776665
No 369
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=56.24 E-value=1.2e+02 Score=27.66 Aligned_cols=66 Identities=11% Similarity=-0.100 Sum_probs=43.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++..-..++.+. ...+|. .=.-++..++..+|+..+++=|+.-| .+.+.+..++.++
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~--~~a~~~----lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQD--PEALYW----LARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAY 83 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 588999988877665544333 233222 12233457888899999998887665 6667777777666
No 370
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=55.12 E-value=67 Score=28.91 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|.+++.....+..+. ...++ ..=.-+...++..+|++++.+-++..+ .+...+..++.++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN--ELAWL----VRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccc--hHHHH----HHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 588888888887665544332 12221 111223456788888888888877655 5556666666554
No 371
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=55.03 E-value=13 Score=40.14 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHhhhhhhHHHHHHHH--hhcccccc----HHHHHHHhhcCChHHHHHHHhhhc
Q 004683 148 LIHQFLNEEEFKETLHKLE--QETRVFFD----INYFREYITSGEWDNAEKYLSAFT 198 (737)
Q Consensus 148 lI~q~L~e~G~~~s~~~L~--~Es~i~~~----~~~~~~~i~~G~w~~~~~~l~~~~ 198 (737)
||.-|.+.--+..+...++ .+.|+..+ ...+......|++++|.++++.+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3334444333444444443 25677776 344445568999999999998873
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.41 E-value=39 Score=37.11 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=43.2
Q ss_pred CeEEEEEecCCCEEEEEec--------------CcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 586 IVNHIQFHPDQIHLLSIHE--------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 586 ~v~~l~~sp~g~~l~~~~d--------------g~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
..-.|+|+|.|.++++ .| ..+.+.+..+++..+-+..+ ....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEEE
Confidence 4567999999986554 22 23566677777766555553 478999999999999888753
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.53 E-value=9.5 Score=46.07 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEeccc
Q 004683 628 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 669 (737)
Q Consensus 628 ~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 669 (737)
..+.+++..++..++++-+.|+++|||++.+++++.......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 345566677888999999999999999999999998876543
No 374
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=51.51 E-value=1.1e+02 Score=28.26 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=27.7
Q ss_pred hHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 37 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 37 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.-++..++..+|++++.+-++..+ .+...+..++.+.
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~ 81 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVF 81 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 345678899999999999887654 5666776776665
No 375
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=50.59 E-value=7.9 Score=26.45 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCcc
Q 004683 93 SSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFE 138 (737)
Q Consensus 93 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (737)
..|++.-+.|+.+-+.... |- -.+.|||-||+.+||+++
T Consensus 15 k~rakfkn~lqh~r~vaaa---ks----~en~rlr~l~kqmcpsld 53 (63)
T 2c9l_Y 15 KSRAKFKQLLQHYREVAAA---KS----SENDRLRLLLKQMCPSLD 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHh---hc----ccchHHHHHHHHhCCccc
Confidence 4566666666666542211 11 167899999999999986
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.10 E-value=55 Score=35.58 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCeEEEEEecCCCEEEEE--e-----------cCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEe
Q 004683 585 TIVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 646 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~~--~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs 646 (737)
.....++|+++|.+.++. . ...+..++..+++....+... ....++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 467789999999877732 1 125777787778765555432 256789999999999988764
No 377
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=49.93 E-value=1.6e+02 Score=28.34 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=14.8
Q ss_pred HhhcCChHHHHHHHhhhcccC
Q 004683 181 YITSGEWDNAEKYLSAFTNMN 201 (737)
Q Consensus 181 ~i~~G~w~~~~~~l~~~~~~~ 201 (737)
....|++++|+..+...-.+.
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHhccHHHHHHHHHHHHccC
Confidence 446788999988887663433
No 378
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=49.78 E-value=59 Score=29.86 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=31.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. ...++. .=.-+...++..+|++++.+-++..+ .+...+..++.+.
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~--~~~~~~----la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKED--AIPYIN----FANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------CCTTHHHHHTTCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhCccc--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 467777777666554432222 222221 11223456677777777777666544 4555555555554
No 379
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=49.12 E-value=2.9e+02 Score=29.96 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=80.9
Q ss_pred CCeEEEEEecCCCEEEEEecCcEEEEeCCCCceeEEecCCCC-CCCeEEEEEccCCCEEEEEec--------------CC
Q 004683 585 TIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCK--------------SG 649 (737)
Q Consensus 585 ~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~sgs~--------------dg 649 (737)
+.+....-.++|.++.. ....+..+|. .++.+..+..... ...-..+..-|+|+.|+.+.. +.
T Consensus 207 g~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD 284 (571)
T 3elq_A 207 GYLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRD 284 (571)
T ss_dssp SCCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSC
T ss_pred CeEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceecc
Confidence 34555555678877664 2245788887 5666666543211 011123556788998876532 34
Q ss_pred eEEEEEcCCCeeEEEEecccccC-----------------------CCC------------------ccCceeeEEEEEc
Q 004683 650 HVKVFDTSTLELRCQINLTAYAQ-----------------------PGT------------------ISLELYPLVIAAH 688 (737)
Q Consensus 650 ~I~vwd~~~~~~~~~~~~~~~~~-----------------------~g~------------------~~~~v~~~~v~~s 688 (737)
.|...| .+|+.+..+....... .|. ......+.++.+.
T Consensus 285 ~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d 363 (571)
T 3elq_A 285 HILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYD 363 (571)
T ss_dssp EEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEE
T ss_pred EEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEc
Confidence 677778 8899888876422210 010 1233457799999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCceeeeecCCC
Q 004683 689 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 722 (737)
Q Consensus 689 p~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~~~ 722 (737)
+.++.+|+++-.- .|..-+. +++-.|...+..
T Consensus 364 ~~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 364 AKDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 8555677777655 6666675 788889886543
No 380
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=48.02 E-value=57 Score=36.91 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=39.5
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+++||++++..--.++-+. ...++.+ =.=+.+.|+..+|+..+++=|+--+ .+.+.|..+..++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~--~~a~~nL----g~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l 87 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF--AAAHSNL----ASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 87 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 488888888776555444332 1222111 1123456777888888888777544 6666776676666
No 381
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.56 E-value=40 Score=32.66 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHhhhhhhHHHHHHHHhhccccc-c----HHHHHHHhhcCChHHHHHHHhhhcccCCCc
Q 004683 150 HQFLNEEEFKETLHKLEQETRVFF-D----INYFREYITSGEWDNAEKYLSAFTNMNDNT 204 (737)
Q Consensus 150 ~q~L~e~G~~~s~~~L~~Es~i~~-~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~ 204 (737)
.+.|++-.+..+...++.+-.-.- | ...|.=.-..|+|+.|++.|+.+..+++..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345666667777777776644333 2 344444558999999999998875555443
No 382
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=46.73 E-value=19 Score=31.15 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|+.++.....++.+.. ..++ ..=.=+...++..+|+..+++=|+.-| .+.+.+..++.++
T Consensus 44 ~~~~~~A~~~~~~al~~~p~~~--~a~~----~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 109 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQERDP--KAHR----FLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELL 109 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHH----HHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3677777777766666544431 1111 111223345666777777777666544 5666666666655
No 383
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.66 E-value=24 Score=31.05 Aligned_cols=62 Identities=26% Similarity=0.263 Sum_probs=43.0
Q ss_pred hHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhcccc
Q 004683 37 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRIL 112 (737)
Q Consensus 37 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 112 (737)
-||+..++..+|..++ +||++ +.+..++.+++...- +.+.+ ...|..+..-|+.+...+.+-
T Consensus 17 ~EY~~~~D~~EA~~cl-~EL~~-p~f~~e~V~~~i~~a----------lE~~~--~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 17 KEYLLSGDISEAEHCL-KELEV-PHFHHELVYEAIVMV----------LESTG--ESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHCCHHHHHHHH-HHHTC-GGGHHHHHHHHHHHH----------HHCCS--SHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhCCCHHHHHHHH-HHhCC-CcchHHHHHHHHHHH----------HcCCC--hHHHHHHHHHHHHHHHCCCcC
Confidence 3888899999999999 46763 456666665543332 33332 567899999999998765444
No 384
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=46.04 E-value=21 Score=28.84 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=36.0
Q ss_pred cccCCCCCCchHHHHHHHHhcCCc--cchhhHHHHHHHHHHhhhhhhHH
Q 004683 114 DKLIFPCVNNSALSSLIKLICPSF--EKETKEELIYLIHQFLNEEEFKE 160 (737)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~evirlI~q~L~e~G~~~ 160 (737)
-+..|+...+..|.++|.. ++.- .+..|.||+..|++|-+++++..
T Consensus 8 ~~~~~~~w~S~eLa~fl~~-iG~~~~~~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 8 KRFEFVGWGSRQLIEFLHS-LGKDTSEMISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp SCCSSSSSSCHHHHHHHHH-HTCCCSSCCCHHHHHHHHHHHHHHHTCBC
T ss_pred CcceecccCCHHHHHHHHH-cCCCCccccCHHHHHHHHHHHHHhhcCcC
Confidence 3566777788889999865 3432 45789999999999999999653
No 385
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=46.00 E-value=79 Score=34.27 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred CCCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 1 MNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
+.|++++|++++..-..++.+. ...++. .=.-++..++..+|++.+++=|+..+ .+.+.+..++.++
T Consensus 1 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~----lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 1 MTADGPRELLQLRAAVRHRPQD--FVAWLM----LADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVR 67 (568)
T ss_dssp --------------------CC--HHHHHH----HHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 5799999999887665543332 233222 22234567899999999999888765 6777777777776
No 386
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=45.87 E-value=3.2e+02 Score=29.54 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=65.2
Q ss_pred EEEEECCCCcEEEEecCC--CCC---------------eEEEEEcCC-C-eEEEEE---CCCeEEEEecCCCcEEEEEcC
Q 004683 474 ISIFSLETFQTLATFANP--PPI---------------ATYFILLPQ-D-LFAFGF---DDSSILVHCPCTKKTKAKLKG 531 (737)
Q Consensus 474 i~vwd~~~~~~~~~~~~~--~~~---------------v~~~~~s~~-~-~l~sgs---~dg~I~vwd~~~~~~~~~l~~ 531 (737)
+.++|=.+|+.+.++.-. .+. ..++++... . .++.+- ....|..||.++++....+..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788898888888776521 111 123333211 2 344432 223588899888776444421
Q ss_pred CC-------------cceEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeecccCCCCCCCCeEEEEEecCC-
Q 004683 532 HQ-------------NRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 596 (737)
Q Consensus 532 ~~-------------~~v~~l~~sp~g~~-l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g- 596 (737)
.. +.+.-..+.-||+- |+.|+. ++|-.. ..+.+...+|. ..+....|.|+.
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG------~~L~st~~gHG---Da~hv~dldP~r~ 376 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVDHDG------KGMYSTGLGHG---DALHTGDLDPGRP 376 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EECTTS------CEEEECSCCCC---SCEEEECCCTTSS
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EECCCC------CEeeeCCCCCC---CeeEEeecCCCCC
Confidence 11 22333344445532 333321 223221 12222233554 455666666663
Q ss_pred -CEEEEE-ec----CcEEEEeCCCCceeEEec
Q 004683 597 -IHLLSI-HE----GQIDVYEAPTLNHTSQLV 622 (737)
Q Consensus 597 -~~l~~~-~d----g~I~iwd~~~~~~~~~~~ 622 (737)
..++.+ .+ ....+.|..+|+.+....
T Consensus 377 GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 377 GLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 344443 22 134557777777766554
No 387
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=45.56 E-value=1.7e+02 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=13.5
Q ss_pred HhhcCChHHHHHHHhhhcccC
Q 004683 181 YITSGEWDNAEKYLSAFTNMN 201 (737)
Q Consensus 181 ~i~~G~w~~~~~~l~~~~~~~ 201 (737)
....|++++|...+...-...
T Consensus 225 ~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhCC
Confidence 346688888888776553333
No 388
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=44.56 E-value=1.9e+02 Score=26.92 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=43.5
Q ss_pred CCchhhHhhhhhcccccCCCC-cchhhheeehhhhhhHhhhcCCcchhhhHHHhhccccccc--chhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSN-HSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVS--QNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. +.....|.+=. -+...++..+|+..+.+=|+.+|.. ..+.+-.++...
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~----~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR----AYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH----HHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 589999999998887744332 22344433321 2455788999999999999887632 233344444443
No 389
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=44.15 E-value=1.3e+02 Score=27.30 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=43.3
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++.....+..+. ...++.+ =.=+...++..+|+.++.+-++..+ .+.+.+..++.+.
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA--ATAYYGA----GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVL 135 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcc--hHHHHHH----HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 589999999888766654332 2222221 1123457888999999999888766 5566666666655
No 390
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=44.07 E-value=2.7e+02 Score=28.17 Aligned_cols=245 Identities=9% Similarity=0.035 Sum_probs=112.7
Q ss_pred CCEEEEEeCCeEEEEECCC-CcEEEEe--cCCCCCeEEEEEcC--CCeEEEEECCC----eEEEEecCCCcEEEEEcC--
Q 004683 463 GSHLFSASGGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLKG-- 531 (737)
Q Consensus 463 ~~~l~s~sdg~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~s~--~~~l~sgs~dg----~I~vwd~~~~~~~~~l~~-- 531 (737)
...|..|...-+.+++... +...... ......|.++++.| .+.+.+++..| .|...+ ..|+.-..+..
T Consensus 22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 22 PVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3456666632355555432 2222221 12345789999998 34555555555 444432 33332222211
Q ss_pred ------------CCcceEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeccc-CC-----------CCCCC
Q 004683 532 ------------HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GL-----------VPETT 585 (737)
Q Consensus 532 ------------~~~~v~~l~~sp~--g~~l~s~s~dg~I~lwdl~~~~~~~~~~~~~~~~-~~-----------~~~~~ 585 (737)
....|.++++.|. ...+.+++..+.|...+-.... ...+..... .. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t---W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS---WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB---CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC---eEECcCccCCccccccccccccCCCCCC
Confidence 1124778888872 4556666656655544322211 111110100 00 00013
Q ss_pred CeEEEEEecC--CCEEEEEecCcEEEEeCCCCceeEEecCC-C--C--------CCCeEEEEEccC-CCEEEEEecCCeE
Q 004683 586 IVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPD-K--M--------DLPITYATYSCD-GKCIYVSCKSGHV 651 (737)
Q Consensus 586 ~v~~l~~sp~--g~~l~~~~dg~I~iwd~~~~~~~~~~~~~-~--h--------~~~v~~~~~sp~-~~~l~sgs~dg~I 651 (737)
.+.+|.++|. +...+...++.|...+- .++....+... . + ...+.++.+.|+ ...|+++...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5789999984 33344445555544432 23322222110 0 0 134889999985 46677666544 5
Q ss_pred EEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEEEEEC-----------CCcEEEEecCCCceeeeec
Q 004683 652 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGKL 719 (737)
Q Consensus 652 ~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-----------Dg~V~iWd~~~~~~~w~~~ 719 (737)
+..+- .++.-..+.. ..+.+ ....+.+++++|.+...+..++. ++...||.-..+...|...
T Consensus 256 ~~s~D-~G~tW~~~~~--~l~~~---~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGD--AMPRE---VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp EEEET-TTTEEECGGG--GSCTT---TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred EEeCC-CCCcceECCC--CCCCC---CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 44432 2332222211 01110 00123478887744444444432 3446677777765667653
No 391
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.59 E-value=30 Score=29.43 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=42.3
Q ss_pred hHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhcccc
Q 004683 37 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRIL 112 (737)
Q Consensus 37 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 112 (737)
-||+..++..+|..+++ ||+ .+.+..++.+++...- +.+.+ ...|..+..-|+.+...+.+-
T Consensus 15 ~EY~~~~D~~Ea~~cl~-eL~-~p~f~~e~V~~~i~~a----------lE~~~--~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 15 KEYLLSGDISEAEHCLK-ELE-VPHFHHELVYEAIVMV----------LESTG--ESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHCCHHHHHHHHH-HHT-CGGGHHHHHHHHHHHH----------HHCCS--SHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHcCCCHHHHHHHHH-HhC-CCccHHHHHHHHHHHH----------HcCCC--hHHHHHHHHHHHHHHHCCCcC
Confidence 48888999999999995 576 2455566655543322 33432 567889999998888755444
No 392
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=41.88 E-value=1.7e+02 Score=28.02 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=17.4
Q ss_pred hhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 40 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
...++..+|+..+.+-++..+ .+...+..++...
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 100 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYY 100 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 344556666666666555433 4444444444333
No 393
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=41.34 E-value=20 Score=29.77 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=52.1
Q ss_pred HhhhcCCcchhhhHHHhhcc------cccccchhhHHHHHHHh--ccccccccccccCCC--CchhhHHHHHHHHHHHHh
Q 004683 38 EALCRHERTEADSIFRKDLK------VFSVSQNRIDCELAELL--ALKDLRENEQLSGYT--NATSSRAKLIDSLKLLVK 107 (737)
Q Consensus 38 e~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~r~~~~~~l~~~~~ 107 (737)
|.-.+....++|.-+|+++. +|-.+.+...++|+... |.+++.. +.|.| ....+ ..+++.|+++..
T Consensus 17 e~~~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~---I~Gvg~~K~~~y-~~~L~~I~~~~~ 92 (113)
T 2dgz_A 17 EQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR---IDGVSEGKAAML-APLWEVIKHFCQ 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHH---SSSCCTTGGGGG-HHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHh---CCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 43445567778888887665 66667799999999998 7777766 55555 34455 899999999988
Q ss_pred hcccc
Q 004683 108 ENRIL 112 (737)
Q Consensus 108 ~~~~~ 112 (737)
.|.+-
T Consensus 93 ~~~~~ 97 (113)
T 2dgz_A 93 TNSVQ 97 (113)
T ss_dssp TTTCC
T ss_pred hcCCC
Confidence 77543
No 394
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=40.40 E-value=1.5e+02 Score=26.65 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhhee------------ehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHH
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFE------------LRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCE 69 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 69 (737)
.|+|++|..++.....++.+ ....+|. +..+.=.-+...++..+|+..+++=|+..| .+.+.+..
T Consensus 17 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 93 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEA 93 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 58999999988766554322 2233332 111122335678999999999999888766 66777777
Q ss_pred HHHHh
Q 004683 70 LAELL 74 (737)
Q Consensus 70 ~~~~~ 74 (737)
++.++
T Consensus 94 lg~~~ 98 (208)
T 3urz_A 94 CAEMQ 98 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 395
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=39.71 E-value=1.4e+02 Score=32.05 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=35.8
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|.+++.....+..+. ...++. .=.-+...|+..+|++++++-++..+ .+...|..+....
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQF--GPAWIG----FAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQH 451 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 478888888777655543322 111111 11123345677778888877776555 4445555554444
No 396
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=38.92 E-value=1.1e+02 Score=28.44 Aligned_cols=70 Identities=11% Similarity=-0.091 Sum_probs=46.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|.+++.......... ..-...++-..=.-+...++..+|+..+.+=++..+ .+...+..++.+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~ 87 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALT--DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYL 87 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccc--CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 588999999888766642111 111222333334455678899999999999888766 5667777777665
No 397
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=38.58 E-value=1.6e+02 Score=28.22 Aligned_cols=66 Identities=8% Similarity=-0.079 Sum_probs=41.5
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. ...++. .=.-+...++..+|+..+.+-++..+ .+...+..++...
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~----l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPER--EEAWRS----LGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 588999998887765543322 222222 12224456788889999988887655 5566666666555
No 398
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=35.88 E-value=21 Score=29.84 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=36.8
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++..-..++.+. ...++ ..=.=++..++..+|+..+.+=|+.-+ .+.+.|..++..+
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~--~~~~~----~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPEN--AILYS----NRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHH----HHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 478888877766554443333 22222 122223455677777777777776544 4555555555554
No 399
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=35.83 E-value=3.4e+02 Score=26.95 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=109.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEE-Ee----
Q 004683 388 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA-LR---- 462 (737)
Q Consensus 388 ~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~-~s---- 462 (737)
.+.+..+........|+.-+..|.+.-.....-. .+. | ...|..+..+..-.....|.++. ..
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp--~~~---------r-~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~ 108 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP--EAS---------R-TARGQHVANLLAFQPEERIAQVIQIRGYTD 108 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSC--BCC---------S-SSCCEEHHHHTTCCTTCCEEEEEEESSTTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCc--CCC---------c-cCCCEEHHHccCCCCCCEEEEEEEeccCCC
Confidence 4567766666677778878888866443322110 110 0 01122221111112344455443 32
Q ss_pred CCEEEEEe-CCeEEEEECCCCc-------EEEEecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC--C----Cc---
Q 004683 463 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--T----KK--- 524 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~--~----~~--- 524 (737)
..+++..+ +|.++...+.... ..-.+.. .+.+..+...... .++..+..|.+..+... . ++
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 56788888 8999998865422 1122333 3344444444444 78888889988877765 2 11
Q ss_pred --EEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeec--eeeeecccCC-CCCCCCeEEEEEe-cCCCE
Q 004683 525 --TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQTGL-VPETTIVNHIQFH-PDQIH 598 (737)
Q Consensus 525 --~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~~~~--~~~~~~~~~~-~~~~~~v~~l~~s-p~g~~ 598 (737)
....+. ....|.++...+++..++.++..|.++.-.+..-..... .-+..+.... . ..+..+... ++...
T Consensus 188 Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~---d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 188 GVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR---GRLVGALIVDDDSEL 263 (327)
T ss_dssp CEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT---CSEEEEEEECTTCEE
T ss_pred CeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC---CeEEEEEEeCCCccE
Confidence 111122 234577766666677899999999998877654211100 1111111111 1 344444443 33344
Q ss_pred EEEEecCcEEEEeCC
Q 004683 599 LLSIHEGQIDVYEAP 613 (737)
Q Consensus 599 l~~~~dg~I~iwd~~ 613 (737)
++.+.+|.+..++..
T Consensus 264 ~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 264 YAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEGGGCEEEEEGG
T ss_pred EEEcCCCeEEEEehh
Confidence 555788888777764
No 400
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=35.71 E-value=93 Score=28.66 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=43.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccc------hhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQ------NRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+. +. ...++ ..=.-+...++..+|++.+.+-++..+... ...+..++...
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~--~~~~~----~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD--ITYLN----NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC--THHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc--HHHHH----HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 589999999988877765 22 12222 222335567888999999999888766332 35555555555
No 401
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=35.36 E-value=3.1e+02 Score=26.38 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=44.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++........+. ... +-..=.-++..++..+|+..+.+-++..+ .+.+.+..++.+.
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 198 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWD--AEL----RELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCc--hHH----HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 588999999888776644333 122 22222334567888999999999888765 6667777777665
No 402
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=35.09 E-value=54 Score=25.33 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=43.6
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhccccccc--chhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVS--QNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. ...++.+ =.=+...++..+|+.++.+-++..+ . +.+.+..++.+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~----a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEE--SKYWLMK----GKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADAL 86 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCC--HHHHHHH----HHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHH
Confidence 589999999887766654332 2222211 1123456788899999999888766 4 566776777666
No 403
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=34.57 E-value=1.9e+02 Score=29.56 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=43.1
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. ...++. .=.-+...++..+|+.++.+-++..+ .+...+..++.++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDN--YIAYYR----RATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLL 104 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc--HHHHHH----HHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHH
Confidence 589999999887765543322 222222 22234567888999999999888665 5566666666665
No 404
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.28 E-value=27 Score=29.25 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=42.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. .....++-..=.=++..++..+|+..+.+-++..+ .+...+..++..+
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 109 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRSQAL 109 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHHHHH
Confidence 588899988887766654432 11112222222234567788888888888877655 4566666666555
No 405
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.58 E-value=2.3e+02 Score=27.32 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhccccc-cH----HHHHHHhhcCChHHHHHHHhhh
Q 004683 158 FKETLHKLEQETRVFF-DI----NYFREYITSGEWDNAEKYLSAF 197 (737)
Q Consensus 158 ~~~s~~~L~~Es~i~~-~~----~~~~~~i~~G~w~~~~~~l~~~ 197 (737)
|.++...+++-....- +. ..-......|+|++|+..+...
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666655554333222 22 2222455889999999988765
No 406
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=32.56 E-value=3.2e+02 Score=26.26 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=44.6
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. ...++ ..=.-+...++..+|+..+.+-++..+ .+...+..++.+.
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~--~~~~~----~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDN--YIAYY----RRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLL 81 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccc--HHHHH----HHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence 589999999888776644332 22222 222334567888999999999887655 6667777777666
No 407
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=32.55 E-value=1.7e+02 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=20.2
Q ss_pred hhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 40 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
...++..+|+.++.+-++..+ .+...+..++.+.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 182 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLY 182 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 345566677777777666554 4555555555544
No 408
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=32.03 E-value=32 Score=27.94 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=43.8
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. ...++ ..=.-+...++..+|+..+.+-++..+ .+...+..++...
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~--~~~~~----~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKD--AKLYS----NRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTC--HHHHH----HHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCc--HHHHH----HHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 589999999888776654332 22222 222234567888899999998888655 5666676666665
No 409
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=31.89 E-value=84 Score=25.80 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=40.7
Q ss_pred hhhhHHHhhcccccccch-----hhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCC
Q 004683 47 EADSIFRKDLKVFSVSQN-----RIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCV 121 (737)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 121 (737)
.-+++|.-.|..+.|+.+ +++++|.+-+ +..|+++ +++|+. ..|
T Consensus 15 ~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~c-----------------k~~qp~i----~kL~~e---~~d------- 63 (111)
T 1wr6_A 15 NNVRLLSEMLLHYSQEDSSDGDRELMKELFDQC-----------------ENKRRTL----FKLASE---TED------- 63 (111)
T ss_dssp HHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHH-----------------HHHHHHH----HHHHHT---CCT-------
T ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH-----------------HHHHHHH----HHHHHH---hcc-------
Confidence 356788888888887776 4555554433 5667754 456642 111
Q ss_pred CchHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 004683 122 NNSALSSLIKLICPSFEKETKEELIYLIHQF 152 (737)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~evirlI~q~ 152 (737)
....|-+||+ ..++++++|.+|
T Consensus 64 dde~l~elL~---------~ND~ln~vi~rY 85 (111)
T 1wr6_A 64 NDNSLGDILQ---------ASDNLSRVINSY 85 (111)
T ss_dssp TCSSHHHHHH---------HHHHHHHHHTHH
T ss_pred CHHHHHHHHH---------HhHHHHHHHHHH
Confidence 1123677887 477788887776
No 410
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=31.07 E-value=47 Score=25.58 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhh
Q 004683 118 FPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNE 155 (737)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e 155 (737)
.|.|||.-+.+|+++.-..-.-.+..|-++++..||+=
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~i 43 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKV 43 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence 57789999999999855554558899999999999964
No 411
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=30.88 E-value=3e+02 Score=28.43 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=43.4
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+ ...++. .=.-+...++..+|+..+.+-++..+ .+.+.+..++.+.
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~---~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR---VNSYIY----MALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMN 314 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC---HHHHHH----HHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc---HHHHHH----HHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHH
Confidence 48899998888776654433 232222 22234567888899999998888765 5666776666655
No 412
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=29.56 E-value=48 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=31.1
Q ss_pred hhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 32 RKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 32 ~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.+.+=..++..|+..+|++.+.+=|+.-| .+...|..++..+
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~ 57 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACL 57 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHH
Confidence 44555667788899999999998887655 6677777766665
No 413
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.49 E-value=1.6e+02 Score=35.32 Aligned_cols=34 Identities=6% Similarity=-0.053 Sum_probs=28.3
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEecCCCceeeee
Q 004683 684 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 718 (737)
Q Consensus 684 ~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~ 718 (737)
+++..+ +..++++-+.|+++|||++.++++....
T Consensus 242 s~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 242 SMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 566666 6789999999999999999999876543
No 414
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=28.52 E-value=89 Score=26.51 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=42.8
Q ss_pred ccCCC--CchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhh
Q 004683 85 LSGYT--NATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEE 157 (737)
Q Consensus 85 ~~~~~--~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G 157 (737)
++|+. +....|+...+.|+++-- ..|+++++.++.... ..++|++--|+.||.+-.
T Consensus 53 FsGF~~~~~~~~~~k~~e~l~K~~~----------------~~L~~~c~iL~l~~~-g~keelv~ril~FL~~P~ 110 (131)
T 2jx3_A 53 FSGFPFEKGSVQYKKKEEMLKKFRN----------------AMLKSICEVLDLERS-GVNSELVKRILNFLMHPK 110 (131)
T ss_dssp SSCSSCCCSSHHHHHHHHHHHHHHH----------------HHHHHHHHTTTCCSC-SCHHHHHHHHHHTTTSCC
T ss_pred cCCCCCCccHHHHHHHHHHHHccCH----------------HHHHHHHHHHCCCCC-CcHHHHHHHHHHHHhCcc
Confidence 66655 234577788888887755 568999998887776 678999999999998744
No 415
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=28.48 E-value=1e+02 Score=33.64 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhh-cc-----ccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhhhHHH
Q 004683 94 SRAKLIDSLKLLVKE-NR-----ILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKET 161 (737)
Q Consensus 94 ~r~~~~~~l~~~~~~-~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s 161 (737)
+...|-.++++++.. +| .+..+..||.++++.+.+|-. |++++.+.||.+.
T Consensus 82 g~~~L~~~F~~lL~~s~p~~p~~~i~k~~p~p~l~~~~l~~L~~-----------------Ia~~m~~~g~~~~ 138 (564)
T 2b1e_A 82 SEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGALSW-----------------ILDYFHGNSEGSI 138 (564)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHTCCCCCCCHHHHHHHHH-----------------HHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHhhccCCCCCCCCHHHHHHHHH-----------------HHHHHHhcCCchH
Confidence 344556666666542 11 133446667777666654443 5666666665543
No 416
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.94 E-value=2.4e+02 Score=30.70 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.2
Q ss_pred CeEEEEEcCCC-eEE-EEEC-----------CCeEEEEecCCCcEEEEEcCC-CcceEEEEEeCCCCEEEEEe
Q 004683 494 IATYFILLPQD-LFA-FGFD-----------DSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSG 552 (737)
Q Consensus 494 ~v~~~~~s~~~-~l~-sgs~-----------dg~I~vwd~~~~~~~~~l~~~-~~~v~~l~~sp~g~~l~s~s 552 (737)
....+.|.++| +.+ +-.. ...|..++..+|+....+.+. ...++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999 433 3211 126777888788876666543 35689999999999887664
No 417
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=27.92 E-value=39 Score=27.46 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=44.3
Q ss_pred CCchhhHhhhhhcccccCCCC-cchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccc--hhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSN-HSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQ--NRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 74 (737)
.|+|++|..++........+. +.....|.+ =.-+...++..+|+..+.+=++..+... .+.+-.++...
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l----g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWL----GESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHH----HHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 589999999998877744333 222333332 1224567899999999999988776331 44455555544
No 418
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.89 E-value=1.5e+02 Score=28.70 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccc
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRE 81 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (737)
.|+..+|..+++......... ..+. +--.|-=++..|+..+|+..+++. .+..-..+..+++++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~-~~e~----~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~------- 75 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPER-DVER----DVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYL------- 75 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHH-HHHH----HHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhcccCCchh-hHHH----HHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHH-------
Confidence 488899998887765543322 1111 122234667788888899877652 222334444444444
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHh
Q 004683 82 NEQLSGYTNATSSRAKLIDSLKLLVK 107 (737)
Q Consensus 82 ~~~~~~~~~~~~~r~~~~~~l~~~~~ 107 (737)
+..+ -+..-+..+++++.
T Consensus 76 ----~~~~----~~~~A~~~l~~ll~ 93 (291)
T 3mkr_A 76 ----ASHS----RRDAIVAELDREMS 93 (291)
T ss_dssp ----HCST----THHHHHHHHHHHHH
T ss_pred ----cCCC----cHHHHHHHHHHHHh
Confidence 2222 23455666777765
No 419
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=27.60 E-value=4e+02 Score=26.29 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred CchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhcccccccc
Q 004683 3 GEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLREN 82 (737)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (737)
|++++|++++.....+..+. ...+-..=.-+...++..+|+..+++-++.-| .+.+.|..+..++
T Consensus 149 g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~-------- 213 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNF------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVL-------- 213 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH--------
T ss_pred cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHH--------
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhh-hHHH
Q 004683 83 EQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEE-FKET 161 (737)
Q Consensus 83 ~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G-~~~s 161 (737)
.....+. ..+..+++.++.+|-. ..+...+...+...| +.++
T Consensus 214 ~~~~~~~-------~A~~~~~~al~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 214 KEARIFD-------RAVAAYLRALSLSPNH------------------------------AVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HTTTCTT-------HHHHHHHHHHHHCTTC------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHH-------HHHHHHHHHHhhCcCC------------------------------HHHHHHHHHHHHHcCCHHHH
Q ss_pred HHHHHhhcccccc-----HHHHHHHhhcCChHHHHHHHhhh
Q 004683 162 LHKLEQETRVFFD-----INYFREYITSGEWDNAEKYLSAF 197 (737)
Q Consensus 162 ~~~L~~Es~i~~~-----~~~~~~~i~~G~w~~~~~~l~~~ 197 (737)
...+++-..+.-+ ...-......|++++|+..+...
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
No 420
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.32 E-value=4.5e+02 Score=25.70 Aligned_cols=245 Identities=8% Similarity=0.010 Sum_probs=120.6
Q ss_pred CCCCEEEEEecCCeEEEeecCccCCC---C-ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCCcccc
Q 004683 349 PDADSAVCAKSLEKSVNLKLQLINEP---S-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 424 (737)
Q Consensus 349 pdg~~la~~s~dg~v~iW~~~~~~~~---~-~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~~~~~ 424 (737)
|+...+++.+.+|-|+--.+..-... + ......+. -.+.+..+........|+..+..|.+.-.....-..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k---e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~-- 75 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK---EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE-- 75 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC---CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC--
Confidence 45567888899998865554321000 0 11111122 245666666666667788888888765444332111
Q ss_pred cccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEE----e-CCEEEEEe-CCeEEEEECCC-------CcEEEEecCC
Q 004683 425 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLET-------FQTLATFANP 491 (737)
Q Consensus 425 g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~----s-~~~l~s~s-dg~i~vwd~~~-------~~~~~~~~~~ 491 (737)
+.. ...|..+.....-.....|.++.. . +.+++..+ +|.++...+.. |...-.+..+
T Consensus 76 ~~~----------~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~ 145 (307)
T 1zi0_A 76 ATR----------GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 145 (307)
T ss_dssp CCS----------SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT
T ss_pred CCC----------CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC
Confidence 000 011222111111023344555432 3 55677777 89999987642 1111122333
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCeEEEEecCC---------CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEEe
Q 004683 492 PPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 561 (737)
Q Consensus 492 ~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~~---------~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lwd 561 (737)
+.+..+....+. .++..+.+|.+..++... |.....+. ....|.++...+++..+++.+..|.++-.+
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 444444444444 777888899888777532 11111222 234566665555566788899999988887
Q ss_pred CCCCcee----eceeeeecccCCCCCCCCeEEEEE-ecCCCEEEEEecCcEEEEeCCC
Q 004683 562 AVGWKKL----CSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAPT 614 (737)
Q Consensus 562 l~~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~~~dg~I~iwd~~~ 614 (737)
+..-... .......+.... +.+..+.. .++...++.+.+|.+.-++...
T Consensus 224 ~~e~~~~~Rg~kG~~~~~~~~~~----~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 224 VAEYPTKSRATKGVISIKVTERN----GLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GGGSCCCCTTSCCEESSCCCTTT----CSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HHHhccCCCCCCCEEeeEecCCC----CeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 6431100 011111121111 34444333 3333445557777766666543
No 421
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=27.28 E-value=4.2e+02 Score=25.42 Aligned_cols=186 Identities=6% Similarity=-0.026 Sum_probs=99.4
Q ss_pred CCEEEEEeCCeEEE---EECCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEECCCeEEEEecCCC------cEEEEEcC
Q 004683 463 GSHLFSASGGKISI---FSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTK------KTKAKLKG 531 (737)
Q Consensus 463 ~~~l~s~sdg~i~v---wd~~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~sgs~dg~I~vwd~~~~------~~~~~l~~ 531 (737)
..+++..+.|.++- |++..+.....+ .....|..+.... +. .++..+.+|.++-..+..- .....++.
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke 114 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE 114 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC
Confidence 44555555776654 343322211113 2345566654421 45 8999999999998876442 11122332
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce----eeceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCc
Q 004683 532 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK----LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 606 (737)
Q Consensus 532 ~~~~v~~l~~sp~g~~l~s~s~dg~I~lwdl~~~~~----~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~ 606 (737)
...+..+........++..+..|.+..+....-.. ......-.+..+ ..|..+...+++..++. +..|.
T Consensus 115 -gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~~T~~G~ 188 (276)
T 3no0_A 115 -GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLVITAKGR 188 (276)
T ss_dssp -TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEEEETTSC
T ss_pred -CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEEEeCCCc
Confidence 34555555555666888899999988876543111 011111113222 45666655555555554 78888
Q ss_pred EEEEeCCC-------CceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE--EEcCC
Q 004683 607 IDVYEAPT-------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTST 658 (737)
Q Consensus 607 I~iwd~~~-------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~v--wd~~~ 658 (737)
++...+.. ++-+..+ . ....+..+....+...++..+.+|.+.. ++...
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i-~--~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVS-G--TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECC-C--SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEE-c--CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 88887642 2222222 1 1344555444334445666666777666 66543
No 422
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=27.17 E-value=2.1e+02 Score=25.89 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCchhhHhhhhhcccccCC-CCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhcccccc
Q 004683 2 NGEWEKAEKYLSAFTKLDD-SNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLR 80 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (737)
.|+|++|..++.....+.. +.. .++-..=.-+...++..+|+..+.+=++..+ .+...+..++.+.
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~------ 86 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDS------VTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY------ 86 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH------
T ss_pred ccCHHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH------
Q ss_pred ccccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhhhHH
Q 004683 81 ENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKE 160 (737)
Q Consensus 81 ~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~ 160 (737)
.....|. .-+..+++.++.+|-. .++...+...+...|...
T Consensus 87 --~~~~~~~-------~A~~~~~~al~~~p~~------------------------------~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 87 --RDMKNNQ-------EYIATLTEGIKAVPGN------------------------------ATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp --HHTTCHH-------HHHHHHHHHHHHSTTC------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred --HHcccHH-------HHHHHHHHHHHHCCCc------------------------------HHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHhhccccccHHHHHHHhhcCChHHHHHHHhhhcccCCC
Q 004683 161 TLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDN 203 (737)
Q Consensus 161 s~~~L~~Es~i~~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~ 203 (737)
...|++++|+..+...-...+.
T Consensus 128 ---------------------~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 128 ---------------------QQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHTTSSCH
T ss_pred ---------------------HHhccHHHHHHHHHHHHhcCCC
No 423
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=26.71 E-value=42 Score=29.56 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=31.9
Q ss_pred hhheeehhhhhhHhhhcCCcchhhhHHHhhccccc
Q 004683 26 KMFFELRKHKYCEALCRHERTEADSIFRKDLKVFS 60 (737)
Q Consensus 26 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~ 60 (737)
=-.+.|++.++|+.++.|+..+|++-|+++-..||
T Consensus 94 ~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASLP 128 (158)
T 1am7_A 94 VALQQIKERGALPMIDRGDIRQAIDRCSNIXASLP 128 (158)
T ss_dssp HHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTSC
T ss_pred HHHHHHHHcCcHHHHHcCCHHHHHHHhccccccCC
Confidence 34678889999999999999999999999999998
No 424
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=26.40 E-value=5.1e+02 Score=26.04 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=42.0
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. ...++. .=.-+...++..+|+.++.+-++..+ .+...+..++.+.
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWD--AELREL----RAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLY 221 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--hHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 378899988887765543322 122211 11223557888999999998887765 5666666666665
No 425
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=26.39 E-value=4.2e+02 Score=27.59 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=37.3
Q ss_pred CCch-hhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEW-EKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++ ++|++++..-..++.+. ...++ ..=.-+...++..+|+..+++=|+..+. ...+..++.++
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~--~~a~~----~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~ 180 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPEL--VEAWN----QLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVL 180 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHH
Confidence 4677 77777776655544332 12222 2222344557777788888777776653 35565666655
No 426
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=26.03 E-value=65 Score=28.31 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=53.1
Q ss_pred hhHhhhhhcccc-cCCCCc-----chhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccc
Q 004683 6 EKAEKYLSAFTK-LDDSNH-----SKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 79 (737)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (737)
...++.-+.|++ |+++.. ..++.|=|+=+=|||-+.+|...+|-..|++=-..|.....+..+.+..+.+.+++
T Consensus 25 ~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l 104 (156)
T 2nxp_A 25 TMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHM 104 (156)
T ss_dssp TSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHH
Confidence 344444556666 666652 34778888889999999999999999988765445543334444444444466666
Q ss_pred cccccccCC
Q 004683 80 RENEQLSGY 88 (737)
Q Consensus 80 ~~~~~~~~~ 88 (737)
.+++-...+
T Consensus 105 ~~n~~~~~f 113 (156)
T 2nxp_A 105 KGNETMLDF 113 (156)
T ss_dssp TTCGGGGGG
T ss_pred hhcHHHHHH
Confidence 665544333
No 427
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=25.61 E-value=47 Score=25.72 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=43.9
Q ss_pred cchhhhHHHhhcc------cccccchhhHHHHHHHh--ccccccccccccCCCCchhhH--HHHHHHHHHHHhhcccc
Q 004683 45 RTEADSIFRKDLK------VFSVSQNRIDCELAELL--ALKDLRENEQLSGYTNATSSR--AKLIDSLKLLVKENRIL 112 (737)
Q Consensus 45 ~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r--~~~~~~l~~~~~~~~~~ 112 (737)
..++|.-+|+++. +|-.+++....+|+... |.+++.. ..|.|..+..| ..+++.++++.+.|.-.
T Consensus 9 l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~---i~Gvg~~k~~~yG~~~l~~i~~~~~e~~p~ 83 (85)
T 2kv2_A 9 CLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQ---IDGVTEDKLEKYGAEVISVLQKYSEWTSPA 83 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHT---SSSCCHHHHHHTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhh---CCCCCHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4455555555544 67677799999999998 6666665 45544333333 78899999988877543
No 428
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=24.77 E-value=3.4e+02 Score=25.74 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=43.1
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. ...++ ..=.=++..++..+|+..+++=|+..+ .+...+..++..+
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLV--AVYYT----NRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcc--HHHHH----HHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 589999999888766654433 12222 111223456788889999998888655 6666666666665
No 429
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=24.71 E-value=52 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCcchhhhHHHhhcc------cccccchhhHHHHHHHh--ccccccccccccCCC--CchhhHHHHHHHHHHHHhhcccc
Q 004683 43 HERTEADSIFRKDLK------VFSVSQNRIDCELAELL--ALKDLRENEQLSGYT--NATSSRAKLIDSLKLLVKENRIL 112 (737)
Q Consensus 43 ~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~r~~~~~~l~~~~~~~~~~ 112 (737)
....++|.-+|+++. +|-.+++...++|+... |.+++.. +.|.| ....+ ..+++.++++.+.|.+-
T Consensus 15 ~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~---I~Gvg~~K~~~y-~~~L~~I~~~~~~~~i~ 90 (103)
T 2e1f_A 15 IVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR---IDGVSEGKAAML-APLLEVIKHFCQTNSVQ 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTT---STTCCHHHHHHT-HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhc---CCCCCHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 345667777776654 66667799999999998 6666665 66665 33446 88999999998887544
No 430
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=24.64 E-value=54 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhh
Q 004683 121 VNNSALSSLIKLICPSFEKETKEELIYLIHQFLNE 155 (737)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e 155 (737)
++++|-+++.+ .|.+.=+||++|+-||=+-
T Consensus 33 i~~SR~~RIA~-----GSG~~v~eVn~Llkqf~~m 62 (69)
T 1dul_A 33 IKGSRKRRIAA-----GSGMQVQDVNRLLKQFDDM 62 (69)
T ss_dssp CCHHHHHHHHH-----HTTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHc-----cCCCCHHHHHHHHHHHHHH
Confidence 36788888888 5778899999999998553
No 431
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.91 E-value=1.1e+02 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCEEEEEe-CCeEEEEECCCCcEEEEecC
Q 004683 454 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 490 (737)
Q Consensus 454 ~~V~~v~~s~~~l~s~s-dg~i~vwd~~~~~~~~~~~~ 490 (737)
..|.++.+...++++-+ |.++|+||+.+++++....-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666666688888888 99999999999998887653
No 432
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.84 E-value=4e+02 Score=23.98 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred CchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccch---hhHHHHHHHh--ccc
Q 004683 3 GEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQN---RIDCELAELL--ALK 77 (737)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~--~~~ 77 (737)
|+|++|..++..+.....+. ...-..+-..=.-+...++..+|+..+.+=++.+|.... -+|....-+. ...
T Consensus 18 g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Q ss_pred cccccccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhh
Q 004683 78 DLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEE 157 (737)
Q Consensus 78 ~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G 157 (737)
.+..-..+...-.....-..-+..++++++..|-- ...+..+.++..+ .....+.-..+.+++...|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-------~~a~~a~~~l~~~------~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-------QYTTDATKRLVFL------KDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTC-------TTHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-------hhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHcC
Q ss_pred -hHHHHHHHHhhcccccc--------HHHHHHHhhcCChHHHHHHHhhhcccCCCcc
Q 004683 158 -FKETLHKLEQETRVFFD--------INYFREYITSGEWDNAEKYLSAFTNMNDNTY 205 (737)
Q Consensus 158 -~~~s~~~L~~Es~i~~~--------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~ 205 (737)
|..+...+++=-...-+ ...-......|++++|+..++.+....+...
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
No 433
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.71 E-value=48 Score=28.77 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|+.++.....++.+. ...++. .=.=+...++..+|++.+++=++..| .+.+.|-.++..+
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~--~~~~~~----lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYN--VDYIMG----LAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 589999999888777765544 122221 11223456888899999999888666 6777777777766
No 434
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.59 E-value=79 Score=32.12 Aligned_cols=63 Identities=25% Similarity=0.259 Sum_probs=45.2
Q ss_pred hhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhcccc
Q 004683 36 YCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRIL 112 (737)
Q Consensus 36 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 112 (737)
--||+..++..+|..|+ +||+. +.+..++++++...- +.+.+ ...|..+..-|+.+...+.+-
T Consensus 224 L~EY~~s~D~~EA~~ci-~EL~~-p~fhhe~V~~av~~a----------LE~~~--~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 224 LKEYLLSGDISEAEHCL-KELEV-PHFHHELVYEAIVMV----------LESTG--ESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHCCHHHHHHHH-HHHCC-TTCHHHHHHHHHHHH----------HHCCS--SHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHhccCCCHHHHHHHH-HHccC-CcchHHHHHHHHHHH----------HccCc--hHHHHHHHHHHHHHHHCCCCC
Confidence 34788889999999999 67874 456666666554432 22222 568999999999999876655
No 435
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=23.49 E-value=54 Score=24.37 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|.+++..-..+..+. ...++.+ =.=+...++..+|+..+++=++..+ .+.+.+..+...+
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~l----~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNN--AEAWYNL----GNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCC--HHHHHHH----HHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 478888888776655543222 2222211 1123346677788888887776554 5555555555443
No 436
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.26 E-value=3e+02 Score=22.25 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCCEEEE-EecCcEEEEeCCCCceeEEecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEcCCCeeEEEEecccccCC
Q 004683 595 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 595 ~g~~l~~-~~dg~I~iwd~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
+|.+.+. ..||.+.+|+...+..+-.-.... ...-..+.+..+|.+++... ++.+ +|...+...
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~-~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~------------ 87 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSG-RGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQ------------ 87 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTT-SCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCccc-CCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCC------------
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCCCceeeeecC
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 720 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~~~~~w~~~~ 720 (737)
.+.+.++--+||.+.+++ ...|...+
T Consensus 88 -----------------~~~~~~~L~~dGnlvly~----~~~W~s~~ 113 (113)
T 3mez_B 88 -----------------EGDYVLILQINGQAVVYG----PAVWSTAA 113 (113)
T ss_dssp -----------------SSCCEEEECTTSCEEEEC----SEEEESCC
T ss_pred -----------------CCCEEEEEcCCceEEEec----CCEecCCC
No 437
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.06 E-value=78 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=40.7
Q ss_pred CCchhhHhhhhhcccccC------CCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccc-------cccchhhHH
Q 004683 2 NGEWEKAEKYLSAFTKLD------DSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF-------SVSQNRIDC 68 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 68 (737)
.|++++|..++.....+- ++......++ ..-.-+...++..+|+..+.+-++.+ .+.....+.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN----ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 589999999887765531 2222222222 22223456788888999888888765 233344555
Q ss_pred HHHHHh
Q 004683 69 ELAELL 74 (737)
Q Consensus 69 ~~~~~~ 74 (737)
.|+.+.
T Consensus 116 ~l~~~~ 121 (311)
T 3nf1_A 116 NLAVLY 121 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 438
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=22.77 E-value=1.2e+02 Score=28.27 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCchhhHhhhhhccccc------CCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccc-------cccchhhHH
Q 004683 2 NGEWEKAEKYLSAFTKL------DDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF-------SVSQNRIDC 68 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 68 (737)
.|+|++|..++..-..+ .++......++ ..=.-+...++..+|+..+.+=++.+ .+.....+.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 131 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN----NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH----HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 58999999988776654 33333223222 22233456788888999988888765 234455555
Q ss_pred HHHHHh
Q 004683 69 ELAELL 74 (737)
Q Consensus 69 ~~~~~~ 74 (737)
.++.+.
T Consensus 132 ~la~~~ 137 (283)
T 3edt_B 132 NLALLC 137 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665555
No 439
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.45 E-value=52 Score=25.73 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=43.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++.....+..+. ...++.+ =.-++..++..+|+..+.+=++..+ .+...+..++..+
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHN--HVLYSNR----SAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCc--HHHHHHH----HHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 589999999888776654332 1222211 1123456888999999998888765 5666666666655
No 440
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=22.40 E-value=3e+02 Score=27.00 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=39.5
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|++++|..++.....+..+. ...++ ..=.-+...++..+|+.++++-++..+ .+...+..++.++
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~--~~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGD--AEAWQ----FLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCC--HHHHH----HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 378888888777666544332 12221 111223456777888888888777654 5566666666655
No 441
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=22.35 E-value=55 Score=26.40 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=43.7
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|.+++..-..+..+. ...++.+- .=+...++..+|+..+.+-++..+ .+.+.+..+..++
T Consensus 63 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~la----~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 128 (133)
T 2lni_A 63 LLEFQLALKDCEECIQLEPTF--IKGYTRKA----AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCM 128 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCc--hHHHHHHH----HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 589999999888776654432 22222221 123456888999999999887665 5666666666554
No 442
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=22.28 E-value=88 Score=35.36 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=40.6
Q ss_pred hhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhcc
Q 004683 40 LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENR 110 (737)
Q Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 110 (737)
.+.|+..+|+..+++=|+--+ .+.+.|..|..++ ..++.|.++...-...++.....++.|.
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l--------~~~g~~~~A~~~~~kal~l~~~~~~~~~ 183 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCL--------QIVCDWTDYDERMKKLVSIVADQLEKNR 183 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH--------HHTTCCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHH--------HhcccHHHHHHHHHHHHHhChhHHhhcc
Confidence 356777788888888776544 6677777777777 5566666555555555555555555543
No 443
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.21 E-value=3.9e+02 Score=26.57 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCcc-chhhHHHHHHHHHHh-hhhhhHHHHHHHHh
Q 004683 90 NATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFE-KETKEELIYLIHQFL-NEEEFKETLHKLEQ 167 (737)
Q Consensus 90 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~evirlI~q~L-~e~G~~~s~~~L~~ 167 (737)
|.+.+|..+-.-+..++... .+ + +.++++.++.... .....+++..+++.+ ++.|-......+.
T Consensus 100 DiP~a~~~La~~v~~~i~~g-~l---------~---~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~- 165 (339)
T 1ug3_A 100 DIPHVWLYLAELVTPILQEG-GV---------P---MGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWR- 165 (339)
T ss_dssp TCTTHHHHHHHHHGGGGSTT-SC---------C---HHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHH-
T ss_pred CccchHHHHHHHHHHHHHCC-CC---------C---HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHH-
Confidence 55666666555555544421 11 2 2233343333322 245566777777755 5778777777666
Q ss_pred hccccc
Q 004683 168 ETRVFF 173 (737)
Q Consensus 168 Es~i~~ 173 (737)
++|+.+
T Consensus 166 ~s~l~l 171 (339)
T 1ug3_A 166 EAGLSW 171 (339)
T ss_dssp HTTCCG
T ss_pred HcCCCH
Confidence 888865
No 444
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.17 E-value=57 Score=26.45 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHh
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 74 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (737)
.|+|++|..++..-..+..+. ...+ -..=.-++..++..+|+..+++=|+..+ .+...|..++..+
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~--~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPED--ARGY----SNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCC--hHHH----HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 589999999887766654443 1222 2222334566888899999999888765 6666776777666
No 445
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.12 E-value=98 Score=30.69 Aligned_cols=63 Identities=25% Similarity=0.257 Sum_probs=43.8
Q ss_pred hhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHhhcccc
Q 004683 36 YCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRIL 112 (737)
Q Consensus 36 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 112 (737)
--||+..++..+|..|+ +||++ |.+..++.+++...- +.+.+ ...|..+..-|+.+...+.+-
T Consensus 173 L~EY~~~~D~~EA~~ci-~EL~~-p~f~~e~V~~ai~~a----------lE~~~--~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCL-KELEV-PHFHHELVYEAIIMV----------LESTG--ESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHCCHHHHHHHH-HHHCC-GGGHHHHHHHHHHHH----------HTCCS--SHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCCCHHHHHHHH-HHcCC-CcchHHHHHHHHHHH----------HccCC--hHHHHHHHHHHHHHHHCCCCC
Confidence 34788889999999998 57774 356666665543332 33333 567899999999998766555
No 446
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.02 E-value=5.8e+02 Score=25.14 Aligned_cols=244 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCeEEEEECCC----CcEEEEecCCCCCeEEEEEcCCCeEEEEECCCeEEEEec---------CCCc---E
Q 004683 463 GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCP---------CTKK---T 525 (737)
Q Consensus 463 ~~~l~s~s-dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~l~sgs~dg~I~vwd~---------~~~~---~ 525 (737)
...+++.+ +|.|+--.+.. +.....+...+.-+..+..+..+.++..+..|.++-+.. ..|. .
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Q ss_pred EEEEcCCCcceEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceee-ceeeeecccCCCCCCCCeEEEEEecCCCEEEE-
Q 004683 526 KAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 601 (737)
Q Consensus 526 ~~~l~~~~~~v~~l~~sp--~g~~l~s~s~dg~I~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~- 601 (737)
.-.+.....-+..+...+ ++.+++.++.+|.++-..+..-.... ..-+..+.-... ..+..+........++.
T Consensus 85 ~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~---d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND---DQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT---CCEEEEEEECSCSEEEEE
T ss_pred ccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC---CEEEEEEEeCCCCEEEEE
Q ss_pred EecCcEEEEeCC-------CCceeEEecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEEcCCCeeEEEEecccccCC
Q 004683 602 IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 673 (737)
Q Consensus 602 ~~dg~I~iwd~~-------~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~~~ 673 (737)
+.+|.+..++.. +..-+.-+.... ...|.++..-+++. .+++.+..|..+..++..-....+-..-.....
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Q ss_pred CCccCceeeEEEEEccCCCCEEEEEECCCcEEEEecCC
Q 004683 674 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 711 (737)
Q Consensus 674 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~V~iWd~~~ 711 (737)
........+..+.... ++..++..+..|.+.-..+..
T Consensus 241 ~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
No 447
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=22.02 E-value=44 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=23.5
Q ss_pred CCchhhHhhhhhcccccCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhccc
Q 004683 2 NGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKV 58 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 58 (737)
.|+|++|..++.....+..+. ...+|.+ =.=+...++..+|+..+++=|+.
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~--~~a~~~l----g~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDY--VGTYYHL----GKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC--THHHHHH----HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc--HHHHHHH----HHHHHHcCCHHHHHHHHHHHHhh
Confidence 366666666665554443332 1122211 11123345555666666655543
No 448
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.37 E-value=5.7e+02 Score=24.88 Aligned_cols=161 Identities=9% Similarity=0.019 Sum_probs=83.3
Q ss_pred CCCeEEEEEc---CCC-eEEEEECCCeEEEEecCC-------CcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcEEEE
Q 004683 492 PPIATYFILL---PQD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 560 (737)
Q Consensus 492 ~~~v~~~~~s---~~~-~l~sgs~dg~I~vwd~~~-------~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I~lw 560 (737)
...|.++... .++ .++..+.+|.++-..+.. |.....+..+ +.+..+....+...++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf 172 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF 172 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE
Confidence 3345555432 344 788999999999886641 1111223333 455555555555678888889988877
Q ss_pred eCCCCcee----eceeeeecccCCCCCCCCeEEEEEecCCCEEEE-EecCcEEEEeCCCC-------ceeEEecCCCCCC
Q 004683 561 DAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKMDL 628 (737)
Q Consensus 561 dl~~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-~~dg~I~iwd~~~~-------~~~~~~~~~~h~~ 628 (737)
+...-... .....-.+..+ ..|.++...+++..+++ +..|.++-.++... +-+..+......+
T Consensus 173 ~~~~v~~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~ 247 (307)
T 1zi0_A 173 KESSVRAMGCNTTGVRGIRLGEG-----DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 247 (307)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTT-----CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTC
T ss_pred EHHHcCccCCCCCCeEeEEeCCC-----CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCC
Confidence 76431111 01111112222 45666655554554544 67788887776321 1111111111134
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEcCC
Q 004683 629 PITYATYSCDGKCIYVSCKSGHVKVFDTST 658 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~dg~I~vwd~~~ 658 (737)
.+..+....+...++..+.+|.+.-+++..
T Consensus 248 ~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 248 LVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 555544433444455556666665555543
No 449
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=20.63 E-value=4.9e+02 Score=26.98 Aligned_cols=162 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred CchhhHhhhhhcccc-cCCCCcchhhheeehhhhhhHhhhcCCcchhhhHHHhhcccccccchhhHHHHHHHhccccccc
Q 004683 3 GEWEKAEKYLSAFTK-LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRE 81 (737)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (737)
|++++|..++..... -.++.......-..+-..-.-+...++..+|+.++.+-++.-+. ...+..++.++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~------- 286 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTL------- 286 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHH-------
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHhhccccccccCCCCCCchHHHHHHHHhcCCccchhhHHHHHHHHHHhhhhh-hHH
Q 004683 82 NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEE-FKE 160 (737)
Q Consensus 82 ~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~evirlI~q~L~e~G-~~~ 160 (737)
.....+. .-+..+++.++.+|-. .++...+...+...| |..
T Consensus 287 -~~~~~~~-------~A~~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 287 -ADKENSQ-------EFFKFFQKAVDLNPEY------------------------------PPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp -CCSSCCH-------HHHHHHHHHHHHCTTC------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred -HHhcCHH-------HHHHHHHHHhccCCCC------------------------------HHHHHHHHHHHHhcCCHHH
Q ss_pred HHHHHHhhcccccc-----HHHHHHHhhcCChHHHHHHHhhhcccCCCcchHHHHH
Q 004683 161 TLHKLEQETRVFFD-----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFS 211 (737)
Q Consensus 161 s~~~L~~Es~i~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~ 211 (737)
+...+++-..+.-+ ...-.-....|++++|+..+.......+........+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
No 450
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.58 E-value=6e+02 Score=24.80 Aligned_cols=250 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred cccCCCCCEEEEEecCCeEEEeecCccCCCC----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEeeccCC
Q 004683 345 STSLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 420 (737)
Q Consensus 345 ~~~spdg~~la~~s~dg~v~iW~~~~~~~~~----~~~~~~l~~~~h~~~V~~v~fspdg~~L~s~s~dg~i~iWd~~~~ 420 (737)
.+.-|+...+++.+.+|-|+--.+..-.... ......+.. .+.+..+........++..+..|.++-.....-
T Consensus 2 edli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke---~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 2 SDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND---GDEIVIALCVNTHDYLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp ------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT---TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred ccccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC---CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC
Q ss_pred cccccccceeeeeEEeecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCeEEEEEC-------CCCcEEEE
Q 004683 421 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSL-------ETFQTLAT 487 (737)
Q Consensus 421 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~i~vwd~-------~~~~~~~~ 487 (737)
.. .=-...|..+.....-.....|.++... +.+++..+ .|.++...+ ..|...-.
T Consensus 79 p~------------~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~ 146 (312)
T 1suu_A 79 KD------------SSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK 146 (312)
T ss_dssp CC-------------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC
T ss_pred CC------------CCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEECCCeEEEEecC---------CCcEEEEEcCCCcceEEEEEeCCCCEEEEEeCCCcE
Q 004683 488 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 557 (737)
Q Consensus 488 ~~~~~~~v~~~~~s~~~-~l~sgs~dg~I~vwd~~---------~~~~~~~l~~~~~~v~~l~~sp~g~~l~s~s~dg~I 557 (737)
+.. .+.+..+....++ .++..+.+|.+..+... .|.....+.. ...|.++..-.++..+++.+..|..
T Consensus 147 L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 147 LND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYG 224 (312)
T ss_dssp CCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEE
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCce
Q ss_pred EEEeC----CCCceeeceeeeecc-cCCCCCCCCeEEEEEecCCCEEEEEecCcEEEEeCCC
Q 004683 558 CVWDA----VGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 614 (737)
Q Consensus 558 ~lwdl----~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~~~dg~I~iwd~~~ 614 (737)
+..++ ..+.......+..+. .... .-+....+.++...++.+..|.+.-.....
T Consensus 225 kr~~~~e~~~~~R~~kGv~~~~~~k~~~~---~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 225 KRLNMSKISELKRGATGYTSYKKSDKKAG---SVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEEGGGSCBCCTTCCCEECSCTTCTTTC---SEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEEHHHhcccCCCCCCEEeeEccCCCCC---eEEEEEEeCCCCEEEEEeCCCeEEEEEccc
No 451
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.22 E-value=3.6e+02 Score=29.39 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=38.7
Q ss_pred CeEEEEEccCCCEEEEEecC------------CeEEEEEcCCCeeEEEEecccccCCCCccCceeeEEEEEccCCCCEEE
Q 004683 629 PITYATYSCDGKCIYVSCKS------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 696 (737)
Q Consensus 629 ~v~~~~~sp~~~~l~sgs~d------------g~I~vwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 696 (737)
..-.|+|+|.|.+++.-..+ +.+.+.+..+++....+... .... ++.++|+| |++.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-------~gaE--~TG~~fsp-Dg~tlf 546 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-------IGCE--VTGISFSP-DQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-------TTCE--EEEEEECT-TSSEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-------CCcc--CcCeeECC-CCCEEE
Confidence 45679999999966653321 34666677778766555422 2333 45999999 777665
Q ss_pred EE
Q 004683 697 LG 698 (737)
Q Consensus 697 s~ 698 (737)
+.
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
Done!