Query 004684
Match_columns 737
No_of_seqs 331 out of 2181
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 11:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03000 amine oxidase 100.0 1E-116 2E-121 1021.0 67.5 707 2-718 141-862 (881)
2 PLN02328 lysine-specific histo 100.0 1.7E-97 4E-102 863.3 62.0 611 2-643 192-805 (808)
3 PLN02529 lysine-specific histo 100.0 2.3E-97 5E-102 859.8 62.3 620 2-652 117-736 (738)
4 KOG0029 Amine oxidase [Seconda 100.0 7.2E-53 1.6E-57 472.5 38.3 473 45-529 13-500 (501)
5 PLN02976 amine oxidase 100.0 9.5E-51 2.1E-55 479.5 46.6 440 46-494 692-1191(1713)
6 PLN02268 probable polyamine ox 100.0 5.4E-49 1.2E-53 442.8 44.2 420 48-489 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 8.4E-47 1.8E-51 430.8 44.4 434 47-490 5-536 (539)
8 PLN02676 polyamine oxidase 100.0 3.1E-46 6.7E-51 423.2 45.6 426 47-491 26-475 (487)
9 KOG0685 Flavin-containing amin 100.0 9.4E-46 2E-50 394.6 34.1 432 45-493 19-495 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 1.1E-42 2.5E-47 372.1 29.2 422 46-490 6-448 (450)
11 TIGR00562 proto_IX_ox protopor 100.0 4.4E-37 9.5E-42 348.7 36.4 408 48-489 3-460 (462)
12 PF01593 Amino_oxidase: Flavin 100.0 6.2E-37 1.3E-41 341.2 29.5 416 57-486 1-450 (450)
13 PLN02576 protoporphyrinogen ox 100.0 8.5E-36 1.8E-40 341.2 36.4 414 45-490 10-488 (496)
14 PRK12416 protoporphyrinogen ox 100.0 1.7E-35 3.7E-40 335.8 37.4 407 48-489 2-461 (463)
15 PRK11883 protoporphyrinogen ox 100.0 6.5E-35 1.4E-39 329.7 35.4 404 48-487 1-450 (451)
16 PRK07233 hypothetical protein; 100.0 2.2E-33 4.8E-38 315.4 36.0 407 49-490 1-432 (434)
17 TIGR02731 phytoene_desat phyto 100.0 6.6E-33 1.4E-37 313.8 32.8 405 49-486 1-453 (453)
18 PLN02612 phytoene desaturase 100.0 2.7E-32 5.8E-37 315.0 36.7 411 47-491 93-550 (567)
19 COG1232 HemY Protoporphyrinoge 100.0 1.3E-31 2.8E-36 294.3 29.6 402 48-486 1-443 (444)
20 PRK07208 hypothetical protein; 100.0 3.6E-30 7.7E-35 293.6 34.6 410 46-488 3-460 (479)
21 TIGR03467 HpnE squalene-associ 100.0 2.2E-29 4.8E-34 281.4 35.5 388 61-486 1-418 (419)
22 PLN02487 zeta-carotene desatur 100.0 2.7E-29 5.9E-34 287.1 35.9 409 47-489 75-553 (569)
23 TIGR02732 zeta_caro_desat caro 100.0 2.2E-29 4.8E-34 285.4 32.8 403 49-486 1-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 4.2E-28 9.1E-33 277.4 36.0 414 48-487 2-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 7.5E-28 1.6E-32 276.0 29.7 412 50-490 1-493 (502)
26 COG3380 Predicted NAD/FAD-depe 100.0 1.9E-28 4.1E-33 244.0 17.5 324 48-489 2-331 (331)
27 TIGR02730 carot_isom carotene 100.0 9E-26 2E-30 258.0 36.6 418 48-489 1-492 (493)
28 KOG1276 Protoporphyrinogen oxi 99.9 2.7E-24 5.8E-29 226.7 29.8 414 46-486 10-490 (491)
29 COG1233 Phytoene dehydrogenase 99.9 1.3E-22 2.7E-27 230.9 20.0 236 47-298 3-282 (487)
30 COG3349 Uncharacterized conser 99.9 2.7E-21 5.9E-26 211.9 18.5 417 48-494 1-468 (485)
31 COG2907 Predicted NAD/FAD-bind 99.9 4.5E-20 9.7E-25 189.9 22.5 272 47-333 8-305 (447)
32 KOG4254 Phytoene desaturase [C 99.7 2.3E-15 5.1E-20 160.0 25.6 241 234-491 251-548 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.7 4.7E-15 1E-19 162.1 20.6 233 48-299 2-249 (377)
34 PTZ00363 rab-GDP dissociation 99.6 6.9E-14 1.5E-18 156.4 19.7 240 46-294 3-287 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.5 3.3E-14 7.3E-19 117.0 6.0 67 52-125 1-68 (68)
36 PRK13977 myosin-cross-reactive 99.5 1.9E-11 4.1E-16 138.4 28.3 72 47-125 22-97 (576)
37 COG2081 Predicted flavoprotein 99.4 2.3E-12 5.1E-17 137.3 16.6 56 239-294 102-164 (408)
38 COG0562 Glf UDP-galactopyranos 99.2 5.2E-11 1.1E-15 122.8 10.3 229 48-299 2-243 (374)
39 PRK10157 putative oxidoreducta 99.2 1.7E-09 3.6E-14 121.8 22.9 38 47-84 5-42 (428)
40 PRK07364 2-octaprenyl-6-methox 99.2 8.7E-09 1.9E-13 115.5 25.9 36 47-82 18-53 (415)
41 PF03486 HI0933_like: HI0933-l 99.1 3.7E-10 7.9E-15 125.3 13.5 56 239-294 100-163 (409)
42 TIGR02032 GG-red-SF geranylger 99.1 8.3E-09 1.8E-13 109.5 22.5 37 48-84 1-37 (295)
43 PRK10015 oxidoreductase; Provi 99.1 9.9E-09 2.1E-13 115.5 24.2 38 46-83 4-41 (429)
44 COG0654 UbiH 2-polyprenyl-6-me 99.1 2.3E-08 5.1E-13 111.1 25.7 202 247-490 108-317 (387)
45 COG0644 FixC Dehydrogenases (f 99.1 1E-08 2.2E-13 114.4 22.6 42 47-88 3-44 (396)
46 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.4E-08 3E-13 112.3 23.4 50 247-296 110-162 (385)
47 PRK08773 2-octaprenyl-3-methyl 99.1 3.3E-08 7.2E-13 110.0 24.7 42 256-297 127-169 (392)
48 COG1635 THI4 Ribulose 1,5-bisp 99.0 2.1E-09 4.6E-14 105.6 12.6 67 48-131 31-98 (262)
49 PF01266 DAO: FAD dependent ox 99.0 5.5E-09 1.2E-13 113.7 16.5 60 239-298 136-204 (358)
50 PRK11259 solA N-methyltryptoph 99.0 7.7E-08 1.7E-12 106.3 25.3 43 255-297 162-204 (376)
51 PRK07494 2-octaprenyl-6-methox 99.0 1.9E-08 4.1E-13 111.7 20.5 36 47-82 7-42 (388)
52 PRK09126 hypothetical protein; 99.0 3.9E-08 8.5E-13 109.3 23.0 49 249-297 116-167 (392)
53 PRK05714 2-octaprenyl-3-methyl 99.0 6.2E-08 1.3E-12 108.3 23.2 52 248-299 117-170 (405)
54 TIGR01984 UbiH 2-polyprenyl-6- 99.0 1.4E-07 3.1E-12 104.4 25.8 51 247-297 109-162 (382)
55 PRK07333 2-octaprenyl-6-methox 99.0 5.3E-08 1.1E-12 108.7 21.4 48 249-296 117-166 (403)
56 PRK08020 ubiF 2-octaprenyl-3-m 99.0 9.8E-08 2.1E-12 106.2 23.4 50 248-297 117-169 (391)
57 TIGR03329 Phn_aa_oxid putative 98.9 2.1E-08 4.6E-13 114.0 17.4 39 45-84 22-62 (460)
58 PRK08013 oxidoreductase; Provi 98.9 1.3E-07 2.8E-12 105.6 23.5 52 248-299 116-170 (400)
59 PRK11728 hydroxyglutarate oxid 98.9 3.4E-09 7.3E-14 118.1 10.7 40 48-87 3-44 (393)
60 TIGR01377 soxA_mon sarcosine o 98.9 6.5E-09 1.4E-13 115.0 12.0 36 48-83 1-36 (380)
61 PRK05732 2-octaprenyl-6-methox 98.9 4.7E-07 1E-11 100.7 26.3 49 248-296 117-168 (395)
62 COG0579 Predicted dehydrogenas 98.9 1.8E-08 3.8E-13 111.2 13.9 42 47-88 3-46 (429)
63 PRK06184 hypothetical protein; 98.9 2.1E-07 4.6E-12 107.1 23.5 36 47-82 3-38 (502)
64 PRK12409 D-amino acid dehydrog 98.9 6.4E-08 1.4E-12 108.4 18.0 37 48-84 2-38 (410)
65 PRK08850 2-octaprenyl-6-methox 98.9 9.5E-08 2.1E-12 106.9 19.3 50 248-297 116-168 (405)
66 PRK07190 hypothetical protein; 98.9 2.7E-07 5.8E-12 105.6 23.2 44 256-299 123-167 (487)
67 PRK07608 ubiquinone biosynthes 98.9 3.6E-07 7.8E-12 101.4 23.7 37 47-83 5-41 (388)
68 PRK08132 FAD-dependent oxidore 98.8 6.3E-07 1.4E-11 104.3 25.8 37 46-82 22-58 (547)
69 PRK08849 2-octaprenyl-3-methyl 98.8 5.1E-07 1.1E-11 100.3 23.5 51 249-299 116-169 (384)
70 PRK06834 hypothetical protein; 98.8 8.6E-07 1.9E-11 101.5 25.7 42 256-297 114-156 (488)
71 PRK08244 hypothetical protein; 98.8 4.3E-07 9.3E-12 104.3 23.3 36 47-82 2-37 (493)
72 PRK08243 4-hydroxybenzoate 3-m 98.8 1.8E-07 3.9E-12 104.2 18.9 35 47-81 2-36 (392)
73 PRK07045 putative monooxygenas 98.8 6.4E-07 1.4E-11 99.6 22.7 36 47-82 5-40 (388)
74 PLN02172 flavin-containing mon 98.8 3.8E-08 8.3E-13 111.4 12.9 41 47-87 10-50 (461)
75 PRK06185 hypothetical protein; 98.8 5.3E-07 1.2E-11 100.8 21.1 36 46-81 5-40 (407)
76 PF13738 Pyr_redox_3: Pyridine 98.8 2.1E-08 4.5E-13 100.7 8.5 40 256-295 96-136 (203)
77 PRK00711 D-amino acid dehydrog 98.8 5.6E-08 1.2E-12 109.0 12.8 40 48-87 1-40 (416)
78 PRK07236 hypothetical protein; 98.7 1.2E-07 2.6E-12 105.4 14.9 42 257-298 113-155 (386)
79 PTZ00383 malate:quinone oxidor 98.7 5.4E-08 1.2E-12 110.8 12.3 39 46-84 44-84 (497)
80 TIGR00292 thiazole biosynthesi 98.7 1.6E-07 3.4E-12 98.1 14.3 39 48-86 22-60 (254)
81 PRK01747 mnmC bifunctional tRN 98.7 1E-07 2.2E-12 113.3 14.2 40 47-86 260-299 (662)
82 PRK11445 putative oxidoreducta 98.7 4.3E-06 9.3E-11 91.8 25.8 34 48-82 2-35 (351)
83 PRK06996 hypothetical protein; 98.7 2.5E-06 5.4E-11 95.3 24.1 48 247-294 119-171 (398)
84 PF05834 Lycopene_cycl: Lycope 98.7 9.2E-06 2E-10 90.0 28.4 47 250-296 94-141 (374)
85 PF01946 Thi4: Thi4 family; PD 98.7 6.7E-09 1.5E-13 102.9 3.0 69 48-133 18-87 (230)
86 PRK06617 2-octaprenyl-6-methox 98.7 1E-06 2.2E-11 97.6 20.4 43 257-299 120-162 (374)
87 PRK06126 hypothetical protein; 98.7 7.9E-07 1.7E-11 103.5 20.2 35 47-81 7-41 (545)
88 PRK07588 hypothetical protein; 98.7 1.3E-07 2.7E-12 105.3 13.1 51 249-299 109-160 (391)
89 TIGR01989 COQ6 Ubiquinone bios 98.7 1.7E-06 3.7E-11 97.9 21.2 34 48-81 1-38 (437)
90 TIGR00275 flavoprotein, HI0933 98.7 2.8E-07 6.1E-12 102.8 14.7 52 245-296 103-159 (400)
91 PLN02463 lycopene beta cyclase 98.6 8.6E-06 1.9E-10 91.9 26.1 35 46-80 27-61 (447)
92 PRK06753 hypothetical protein; 98.6 1.3E-07 2.8E-12 104.5 11.3 43 257-299 111-154 (373)
93 PRK06847 hypothetical protein; 98.6 1.5E-07 3.3E-12 103.9 11.8 42 256-297 121-163 (375)
94 PRK08274 tricarballylate dehyd 98.6 6.4E-07 1.4E-11 102.2 16.9 38 47-84 4-43 (466)
95 PRK06481 fumarate reductase fl 98.6 7.2E-07 1.6E-11 102.6 17.2 41 46-86 60-100 (506)
96 PRK07538 hypothetical protein; 98.6 3E-06 6.4E-11 95.1 21.6 35 48-82 1-35 (413)
97 PRK05868 hypothetical protein; 98.6 4.4E-07 9.6E-12 100.4 13.7 47 254-300 116-163 (372)
98 PRK05257 malate:quinone oxidor 98.6 4.2E-07 9E-12 103.9 13.7 41 47-87 5-47 (494)
99 TIGR03364 HpnW_proposed FAD de 98.6 1E-07 2.3E-12 104.9 8.5 34 48-81 1-34 (365)
100 PRK13339 malate:quinone oxidor 98.6 6.3E-07 1.4E-11 101.9 14.9 39 46-84 5-45 (497)
101 TIGR01813 flavo_cyto_c flavocy 98.6 1.1E-06 2.4E-11 99.3 16.5 38 49-86 1-39 (439)
102 TIGR01320 mal_quin_oxido malat 98.6 6.7E-07 1.5E-11 102.0 14.5 38 48-85 1-40 (483)
103 TIGR01373 soxB sarcosine oxida 98.5 1.2E-06 2.6E-11 98.1 15.7 38 46-84 29-68 (407)
104 PF00890 FAD_binding_2: FAD bi 98.5 6.6E-07 1.4E-11 100.4 13.4 36 49-84 1-36 (417)
105 PLN02661 Putative thiazole syn 98.5 1.1E-06 2.3E-11 94.8 14.2 41 47-87 92-133 (357)
106 PRK07121 hypothetical protein; 98.5 2.4E-06 5.3E-11 98.1 18.0 41 46-86 19-59 (492)
107 PRK12845 3-ketosteroid-delta-1 98.5 2.1E-06 4.6E-11 99.7 17.2 41 45-86 14-54 (564)
108 PRK08294 phenol 2-monooxygenas 98.5 6E-06 1.3E-10 97.4 21.1 35 46-80 31-66 (634)
109 PRK08163 salicylate hydroxylas 98.5 8.6E-07 1.9E-11 98.7 13.4 52 247-298 113-167 (396)
110 TIGR03219 salicylate_mono sali 98.5 8E-07 1.7E-11 99.8 13.2 53 247-299 105-161 (414)
111 PRK12266 glpD glycerol-3-phosp 98.5 1.5E-06 3.3E-11 100.0 15.5 39 46-84 5-43 (508)
112 PLN02697 lycopene epsilon cycl 98.5 3.4E-05 7.3E-10 88.7 26.3 35 45-79 106-140 (529)
113 COG0665 DadA Glycine/D-amino a 98.5 2.8E-06 6E-11 94.1 16.8 37 47-83 4-40 (387)
114 TIGR01292 TRX_reduct thioredox 98.5 5.5E-07 1.2E-11 95.9 10.4 38 48-86 1-38 (300)
115 PRK06183 mhpA 3-(3-hydroxyphen 98.5 1.7E-06 3.6E-11 100.6 14.1 38 46-83 9-46 (538)
116 PRK12842 putative succinate de 98.4 5.2E-06 1.1E-10 97.1 17.9 41 47-87 9-49 (574)
117 COG0578 GlpA Glycerol-3-phosph 98.4 2.9E-05 6.2E-10 87.9 22.8 39 46-84 11-49 (532)
118 PRK11101 glpA sn-glycerol-3-ph 98.4 1.4E-06 3E-11 101.2 11.9 37 47-83 6-42 (546)
119 PF00996 GDI: GDP dissociation 98.4 6.6E-06 1.4E-10 91.6 16.7 237 46-292 3-284 (438)
120 PRK06475 salicylate hydroxylas 98.4 1.6E-06 3.5E-11 96.8 12.0 35 48-82 3-37 (400)
121 PRK09897 hypothetical protein; 98.4 3.6E-06 7.9E-11 96.6 14.7 42 48-89 2-46 (534)
122 KOG2820 FAD-dependent oxidored 98.4 1.7E-06 3.7E-11 90.3 10.7 62 238-299 148-214 (399)
123 PRK07573 sdhA succinate dehydr 98.4 8E-06 1.7E-10 96.4 17.8 53 30-84 20-72 (640)
124 PRK12834 putative FAD-binding 98.4 7.9E-06 1.7E-10 95.1 16.6 40 47-86 4-45 (549)
125 PLN02927 antheraxanthin epoxid 98.3 3.7E-06 8.1E-11 98.2 13.0 53 247-299 194-250 (668)
126 PRK06134 putative FAD-binding 98.3 1.7E-05 3.7E-10 92.9 18.1 43 45-87 10-52 (581)
127 PRK15317 alkyl hydroperoxide r 98.3 4.8E-06 1E-10 96.2 13.0 41 45-87 209-249 (517)
128 PRK12835 3-ketosteroid-delta-1 98.3 1.4E-05 3E-10 93.6 16.6 39 46-84 10-48 (584)
129 PF13454 NAD_binding_9: FAD-NA 98.3 6.8E-06 1.5E-10 79.4 11.5 49 247-295 105-155 (156)
130 PRK04176 ribulose-1,5-biphosph 98.3 7.8E-07 1.7E-11 93.1 5.1 39 48-86 26-64 (257)
131 TIGR00136 gidA glucose-inhibit 98.3 7.2E-05 1.6E-09 86.2 21.4 39 48-86 1-39 (617)
132 TIGR03140 AhpF alkyl hydropero 98.3 8.1E-06 1.8E-10 94.3 13.5 40 45-86 210-249 (515)
133 PRK06175 L-aspartate oxidase; 98.2 9.7E-06 2.1E-10 91.5 13.3 37 47-84 4-40 (433)
134 PRK05945 sdhA succinate dehydr 98.2 2.6E-05 5.6E-10 91.3 17.0 38 47-84 3-42 (575)
135 PF06100 Strep_67kDa_ant: Stre 98.2 3E-05 6.5E-10 86.1 16.2 43 47-89 2-48 (500)
136 TIGR00551 nadB L-aspartate oxi 98.2 3.1E-05 6.8E-10 88.8 17.1 38 47-85 2-39 (488)
137 TIGR01812 sdhA_frdA_Gneg succi 98.2 5.7E-05 1.2E-09 88.4 18.2 37 49-85 1-37 (566)
138 PRK08958 sdhA succinate dehydr 98.2 5.5E-05 1.2E-09 88.6 18.0 38 47-84 7-44 (588)
139 PLN02852 ferredoxin-NADP+ redu 98.2 2.8E-06 6E-11 96.4 6.9 42 47-88 26-69 (491)
140 PRK07803 sdhA succinate dehydr 98.2 5.1E-05 1.1E-09 89.5 17.6 38 47-84 8-45 (626)
141 TIGR02485 CobZ_N-term precorri 98.1 4E-05 8.7E-10 86.6 15.6 55 240-294 116-180 (432)
142 PRK06854 adenylylsulfate reduc 98.1 4.4E-05 9.5E-10 89.8 16.3 37 47-83 11-49 (608)
143 PRK12843 putative FAD-binding 98.1 8.4E-05 1.8E-09 87.0 18.5 42 46-87 15-56 (578)
144 TIGR03315 Se_ygfK putative sel 98.1 3.2E-06 7E-11 102.6 6.4 42 47-88 537-578 (1012)
145 PRK12779 putative bifunctional 98.1 3E-06 6.4E-11 103.7 6.1 41 47-87 306-346 (944)
146 PRK08071 L-aspartate oxidase; 98.1 5.9E-05 1.3E-09 86.9 16.2 38 47-85 3-40 (510)
147 PRK08401 L-aspartate oxidase; 98.1 9E-05 1.9E-09 84.5 16.9 33 48-80 2-34 (466)
148 PF01494 FAD_binding_3: FAD bi 98.1 2.6E-06 5.6E-11 92.6 4.1 35 48-82 2-36 (356)
149 PRK05249 soluble pyridine nucl 98.1 3.4E-06 7.3E-11 96.1 5.2 40 47-86 5-44 (461)
150 PRK12831 putative oxidoreducta 98.1 5.4E-06 1.2E-10 94.3 6.6 42 46-87 139-180 (464)
151 KOG1399 Flavin-containing mono 98.1 3.3E-06 7.2E-11 94.4 4.7 40 47-86 6-45 (448)
152 COG2072 TrkA Predicted flavopr 98.0 5.7E-06 1.2E-10 93.4 6.5 48 45-92 6-54 (443)
153 TIGR01350 lipoamide_DH dihydro 98.0 4.7E-06 1E-10 94.9 5.4 39 48-87 2-40 (461)
154 PRK06069 sdhA succinate dehydr 98.0 0.00012 2.5E-09 85.9 16.9 38 47-84 5-45 (577)
155 PLN02985 squalene monooxygenas 98.0 1.6E-05 3.4E-10 91.6 9.3 37 45-81 41-77 (514)
156 PRK06263 sdhA succinate dehydr 98.0 0.00011 2.3E-09 85.6 16.3 37 47-84 7-44 (543)
157 TIGR01424 gluta_reduc_2 glutat 98.0 5.5E-06 1.2E-10 93.9 5.2 40 47-87 2-41 (446)
158 TIGR01421 gluta_reduc_1 glutat 98.0 5.5E-06 1.2E-10 94.0 5.2 40 47-87 2-41 (450)
159 PRK06115 dihydrolipoamide dehy 98.0 5.9E-06 1.3E-10 94.2 5.4 41 47-87 3-43 (466)
160 COG0493 GltD NADPH-dependent g 98.0 1.4E-05 2.9E-10 90.0 7.8 75 4-88 90-164 (457)
161 KOG2404 Fumarate reductase, fl 98.0 0.00022 4.8E-09 74.2 15.6 38 49-86 11-48 (477)
162 COG1148 HdrA Heterodisulfide r 98.0 6.2E-06 1.3E-10 89.8 4.6 43 47-89 124-166 (622)
163 PF00743 FMO-like: Flavin-bind 98.0 5.7E-06 1.2E-10 95.2 4.7 39 48-86 2-40 (531)
164 PRK07251 pyridine nucleotide-d 98.0 7.7E-06 1.7E-10 92.6 5.6 41 47-87 3-44 (438)
165 PRK09853 putative selenate red 98.0 9E-06 2E-10 98.4 6.2 42 47-88 539-580 (1019)
166 PRK07512 L-aspartate oxidase; 97.9 0.00012 2.7E-09 84.4 15.1 34 46-81 8-41 (513)
167 PRK08010 pyridine nucleotide-d 97.9 1E-05 2.2E-10 91.7 6.0 41 47-87 3-44 (441)
168 TIGR01176 fum_red_Fp fumarate 97.9 0.00019 4.1E-09 84.0 16.7 39 47-85 3-43 (580)
169 PF12831 FAD_oxidored: FAD dep 97.9 8.3E-06 1.8E-10 92.0 4.8 38 49-86 1-38 (428)
170 TIGR01316 gltA glutamate synth 97.9 1.4E-05 3E-10 90.7 6.7 41 47-87 133-173 (449)
171 PLN00093 geranylgeranyl diphos 97.9 1.2E-05 2.6E-10 91.1 6.0 36 45-80 37-72 (450)
172 PRK06416 dihydrolipoamide dehy 97.9 9.7E-06 2.1E-10 92.4 5.3 40 47-87 4-43 (462)
173 TIGR03143 AhpF_homolog putativ 97.9 1.2E-05 2.5E-10 93.7 6.0 40 47-87 4-43 (555)
174 TIGR02023 BchP-ChlP geranylger 97.9 9.9E-06 2.1E-10 90.2 5.1 32 48-79 1-32 (388)
175 PRK08205 sdhA succinate dehydr 97.9 0.00032 7E-09 82.3 17.8 37 47-84 5-41 (583)
176 PRK12775 putative trifunctiona 97.9 1.4E-05 3E-10 98.8 6.3 41 47-87 430-470 (1006)
177 PRK05976 dihydrolipoamide dehy 97.9 1.2E-05 2.7E-10 91.8 5.5 41 46-87 3-43 (472)
178 PRK06116 glutathione reductase 97.9 1E-05 2.2E-10 91.9 4.6 39 47-86 4-42 (450)
179 PTZ00188 adrenodoxin reductase 97.9 1.8E-05 3.9E-10 88.8 6.4 43 47-89 39-82 (506)
180 PRK06467 dihydrolipoamide dehy 97.9 1.4E-05 3.1E-10 91.2 5.5 40 47-86 4-43 (471)
181 PRK06292 dihydrolipoamide dehy 97.9 1.3E-05 2.9E-10 91.2 5.2 40 47-87 3-42 (460)
182 PRK13369 glycerol-3-phosphate 97.9 1.5E-05 3.3E-10 91.7 5.6 38 47-84 6-43 (502)
183 PRK12778 putative bifunctional 97.8 2E-05 4.3E-10 95.2 6.6 41 47-87 431-471 (752)
184 TIGR01790 carotene-cycl lycope 97.8 1.4E-05 3E-10 88.9 4.8 36 49-84 1-36 (388)
185 PRK12769 putative oxidoreducta 97.8 1.7E-05 3.6E-10 94.3 5.8 41 47-87 327-367 (654)
186 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 1.6E-05 3.4E-10 88.7 5.1 35 47-81 2-36 (390)
187 TIGR02028 ChlP geranylgeranyl 97.8 1.5E-05 3.3E-10 89.0 5.0 36 48-83 1-36 (398)
188 KOG2614 Kynurenine 3-monooxyge 97.8 1.6E-05 3.5E-10 85.8 4.9 36 47-82 2-37 (420)
189 PRK12814 putative NADPH-depend 97.8 2.2E-05 4.8E-10 93.0 6.6 41 47-87 193-233 (652)
190 PRK06370 mercuric reductase; V 97.8 1.8E-05 3.8E-10 90.3 5.5 40 47-87 5-44 (463)
191 PRK10262 thioredoxin reductase 97.8 1.9E-05 4.1E-10 85.5 5.3 41 46-87 5-45 (321)
192 PRK07818 dihydrolipoamide dehy 97.8 1.9E-05 4.2E-10 90.1 5.3 40 47-87 4-43 (466)
193 TIGR01372 soxA sarcosine oxida 97.8 2.3E-05 5E-10 97.1 6.3 43 46-88 162-204 (985)
194 PRK12837 3-ketosteroid-delta-1 97.8 2E-05 4.4E-10 90.9 5.5 40 46-86 6-45 (513)
195 PRK11749 dihydropyrimidine deh 97.8 2.8E-05 6E-10 88.5 6.4 42 46-87 139-180 (457)
196 PF06039 Mqo: Malate:quinone o 97.8 0.00069 1.5E-08 74.7 16.6 39 46-84 2-42 (488)
197 PRK12810 gltD glutamate syntha 97.8 3.1E-05 6.8E-10 88.4 6.6 41 47-87 143-183 (471)
198 PRK14694 putative mercuric red 97.8 2.3E-05 5E-10 89.4 5.6 41 46-87 5-45 (468)
199 COG2509 Uncharacterized FAD-de 97.8 0.0005 1.1E-08 75.2 15.2 40 256-295 187-228 (486)
200 KOG0399 Glutamate synthase [Am 97.8 2.5E-05 5.5E-10 91.6 5.4 41 47-87 1785-1825(2142)
201 PRK12809 putative oxidoreducta 97.8 5.5E-05 1.2E-09 89.6 8.2 41 47-87 310-350 (639)
202 PRK14727 putative mercuric red 97.8 3.5E-05 7.6E-10 88.2 6.3 41 47-87 16-56 (479)
203 TIGR02053 MerA mercuric reduct 97.7 2.5E-05 5.5E-10 89.0 5.1 39 48-87 1-39 (463)
204 PRK06567 putative bifunctional 97.7 3.1E-05 6.8E-10 92.8 6.0 39 47-85 383-421 (1028)
205 TIGR01318 gltD_gamma_fam gluta 97.7 7.2E-05 1.6E-09 85.3 8.3 42 46-87 140-181 (467)
206 PRK13748 putative mercuric red 97.7 3.1E-05 6.7E-10 90.5 5.3 40 47-87 98-137 (561)
207 PRK05192 tRNA uridine 5-carbox 97.7 3.1E-05 6.7E-10 89.3 5.0 39 47-85 4-43 (618)
208 PTZ00058 glutathione reductase 97.7 4.9E-05 1.1E-09 88.2 6.7 41 46-87 47-87 (561)
209 COG0492 TrxB Thioredoxin reduc 97.7 3.2E-05 6.9E-10 82.8 4.6 42 47-88 3-44 (305)
210 PLN02464 glycerol-3-phosphate 97.7 3.4E-05 7.4E-10 90.9 5.2 39 46-84 70-108 (627)
211 PRK12844 3-ketosteroid-delta-1 97.7 4.3E-05 9.3E-10 89.0 5.6 40 47-86 6-45 (557)
212 PRK12839 hypothetical protein; 97.7 4.8E-05 1E-09 88.8 5.7 42 46-87 7-48 (572)
213 PRK06327 dihydrolipoamide dehy 97.7 4.2E-05 9.1E-10 87.5 4.9 32 47-78 4-35 (475)
214 PRK05335 tRNA (uracil-5-)-meth 97.6 5E-05 1.1E-09 84.0 5.3 36 48-83 3-38 (436)
215 TIGR01789 lycopene_cycl lycope 97.6 4.4E-05 9.5E-10 84.4 4.8 36 49-84 1-38 (370)
216 PTZ00052 thioredoxin reductase 97.6 4.8E-05 1E-09 87.5 5.2 32 47-78 5-36 (499)
217 KOG2844 Dimethylglycine dehydr 97.6 0.00015 3.3E-09 82.0 8.5 51 247-297 187-243 (856)
218 TIGR01317 GOGAT_sm_gam glutama 97.6 8E-05 1.7E-09 85.3 6.5 41 47-87 143-183 (485)
219 PRK07843 3-ketosteroid-delta-1 97.6 7E-05 1.5E-09 87.3 5.8 41 46-86 6-46 (557)
220 PLN02507 glutathione reductase 97.6 6.3E-05 1.4E-09 86.5 5.3 40 47-86 25-73 (499)
221 PTZ00367 squalene epoxidase; P 97.6 6.2E-05 1.3E-09 87.4 5.0 34 47-80 33-66 (567)
222 PRK07804 L-aspartate oxidase; 97.6 8.3E-05 1.8E-09 86.4 6.0 39 46-84 15-53 (541)
223 KOG2415 Electron transfer flav 97.6 5.6E-05 1.2E-09 81.0 4.1 43 46-88 75-123 (621)
224 PLN02815 L-aspartate oxidase 97.6 8.4E-05 1.8E-09 86.9 5.9 39 45-84 27-65 (594)
225 PRK12771 putative glutamate sy 97.6 0.00011 2.3E-09 86.1 6.7 42 46-87 136-177 (564)
226 PRK08641 sdhA succinate dehydr 97.6 6.8E-05 1.5E-09 87.9 5.1 37 48-84 4-40 (589)
227 PRK07057 sdhA succinate dehydr 97.5 9E-05 1.9E-09 86.9 5.8 39 46-84 11-49 (591)
228 PF04820 Trp_halogenase: Trypt 97.5 0.00048 1E-08 78.2 11.3 32 49-80 1-35 (454)
229 TIGR00137 gid_trmFO tRNA:m(5)U 97.5 8.5E-05 1.8E-09 82.7 4.9 37 48-84 1-37 (433)
230 PRK06452 sdhA succinate dehydr 97.5 8.2E-05 1.8E-09 86.9 5.0 38 47-84 5-42 (566)
231 PRK07395 L-aspartate oxidase; 97.5 9.1E-05 2E-09 86.1 5.4 40 45-85 7-46 (553)
232 PF00732 GMC_oxred_N: GMC oxid 97.5 6.5E-05 1.4E-09 80.2 3.5 35 48-82 1-36 (296)
233 PLN00128 Succinate dehydrogena 97.5 9.2E-05 2E-09 87.3 5.0 39 46-84 49-87 (635)
234 PRK12770 putative glutamate sy 97.5 0.00015 3.3E-09 79.5 6.4 41 47-87 18-58 (352)
235 PTZ00139 Succinate dehydrogena 97.5 9.5E-05 2.1E-09 87.1 5.0 38 47-84 29-66 (617)
236 PLN02546 glutathione reductase 97.5 0.00011 2.3E-09 85.4 5.1 32 47-78 79-110 (558)
237 TIGR01423 trypano_reduc trypan 97.5 0.00011 2.4E-09 84.0 5.2 40 47-86 3-51 (486)
238 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00013 2.8E-09 82.1 5.3 41 47-87 4-44 (454)
239 PRK09078 sdhA succinate dehydr 97.5 0.00011 2.4E-09 86.2 5.0 39 46-84 11-49 (598)
240 PF01134 GIDA: Glucose inhibit 97.4 7.6E-05 1.7E-09 81.8 3.2 40 49-88 1-41 (392)
241 PF07992 Pyr_redox_2: Pyridine 97.4 0.00013 2.9E-09 72.7 4.8 32 49-80 1-32 (201)
242 KOG2960 Protein involved in th 97.4 4.1E-05 8.9E-10 75.0 0.9 66 48-130 77-145 (328)
243 COG3573 Predicted oxidoreducta 97.4 0.00015 3.3E-09 75.6 5.1 38 47-84 5-44 (552)
244 PRK08626 fumarate reductase fl 97.4 0.00014 3E-09 86.2 5.0 38 47-84 5-42 (657)
245 PRK13984 putative oxidoreducta 97.4 0.00021 4.5E-09 84.4 6.4 42 46-87 282-323 (604)
246 PTZ00153 lipoamide dehydrogena 97.4 0.00018 3.9E-09 84.8 5.3 41 47-87 116-157 (659)
247 PTZ00306 NADH-dependent fumara 97.4 0.00022 4.7E-09 89.9 6.4 41 46-86 408-448 (1167)
248 PF00070 Pyr_redox: Pyridine n 97.4 0.00029 6.2E-09 59.8 5.1 35 49-83 1-35 (80)
249 TIGR02462 pyranose_ox pyranose 97.3 0.00018 3.9E-09 82.7 4.9 37 48-84 1-37 (544)
250 PRK09231 fumarate reductase fl 97.3 0.00018 4E-09 84.2 4.5 38 47-84 4-43 (582)
251 PRK08275 putative oxidoreducta 97.3 0.00023 4.9E-09 83.1 4.7 37 47-83 9-47 (554)
252 KOG1298 Squalene monooxygenase 97.2 0.00035 7.6E-09 74.5 5.2 35 45-79 43-77 (509)
253 PRK06912 acoL dihydrolipoamide 97.2 0.00028 6.1E-09 80.4 4.9 38 48-86 1-38 (458)
254 TIGR01438 TGR thioredoxin and 97.2 0.00029 6.2E-09 80.8 5.0 33 47-79 2-34 (484)
255 PRK09077 L-aspartate oxidase; 97.2 0.00031 6.6E-09 81.6 4.9 37 47-84 8-44 (536)
256 PRK02106 choline dehydrogenase 97.2 0.00035 7.5E-09 81.7 5.4 34 47-80 5-39 (560)
257 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00033 7.1E-09 84.7 4.9 34 48-81 1-36 (765)
258 PRK05329 anaerobic glycerol-3- 97.2 0.00043 9.4E-09 77.5 5.2 34 47-80 2-35 (422)
259 KOG1439 RAB proteins geranylge 97.2 0.002 4.2E-08 69.4 9.7 235 48-293 5-285 (440)
260 COG4716 Myosin-crossreactive a 97.1 0.002 4.3E-08 68.5 9.5 40 47-86 22-65 (587)
261 COG3075 GlpB Anaerobic glycero 97.1 0.00044 9.6E-09 72.4 4.4 33 47-79 2-34 (421)
262 TIGR01811 sdhA_Bsu succinate d 97.1 0.00039 8.4E-09 81.8 4.4 35 50-84 1-35 (603)
263 PRK07845 flavoprotein disulfid 97.1 0.00048 1E-08 78.6 4.9 39 48-87 2-40 (466)
264 COG1053 SdhA Succinate dehydro 97.1 0.00049 1.1E-08 79.7 4.8 39 46-84 5-43 (562)
265 COG5044 MRS6 RAB proteins gera 97.1 0.025 5.5E-07 60.5 16.8 239 47-293 6-280 (434)
266 TIGR02061 aprA adenosine phosp 97.1 0.00051 1.1E-08 80.5 4.7 33 49-81 1-37 (614)
267 KOG1800 Ferredoxin/adrenodoxin 97.0 0.0007 1.5E-08 72.2 4.9 45 48-92 21-67 (468)
268 PRK04965 NADH:flavorubredoxin 96.8 0.0053 1.1E-07 68.1 10.3 40 256-295 197-237 (377)
269 PRK13800 putative oxidoreducta 96.8 0.00099 2.2E-08 82.0 4.7 36 46-81 12-47 (897)
270 TIGR01350 lipoamide_DH dihydro 96.8 0.0069 1.5E-07 69.0 10.8 35 47-81 170-204 (461)
271 KOG2665 Predicted FAD-dependen 96.8 0.0022 4.9E-08 66.8 5.9 42 43-84 44-87 (453)
272 TIGR03452 mycothione_red mycot 96.7 0.0016 3.4E-08 74.1 5.2 38 47-87 2-39 (452)
273 KOG1335 Dihydrolipoamide dehyd 96.7 0.0015 3.3E-08 69.7 4.5 42 46-87 38-79 (506)
274 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.0087 1.9E-07 66.4 10.7 49 249-297 141-190 (381)
275 KOG2853 Possible oxidoreductas 96.7 0.0016 3.5E-08 68.5 4.1 36 46-81 85-124 (509)
276 TIGR01810 betA choline dehydro 96.7 0.0013 2.7E-08 76.5 3.8 32 49-80 1-33 (532)
277 PRK09564 coenzyme A disulfide 96.7 0.0017 3.6E-08 73.6 4.7 36 48-83 1-38 (444)
278 TIGR03378 glycerol3P_GlpB glyc 96.7 0.0019 4.2E-08 71.7 4.9 33 48-80 1-33 (419)
279 PRK07846 mycothione reductase; 96.6 0.0016 3.5E-08 74.0 4.4 36 48-86 2-37 (451)
280 COG2303 BetA Choline dehydroge 96.6 0.0018 3.9E-08 75.2 4.4 35 45-79 5-39 (542)
281 PLN02785 Protein HOTHEAD 96.6 0.0025 5.4E-08 74.6 5.5 35 45-80 53-87 (587)
282 PRK07846 mycothione reductase; 96.6 0.0091 2E-07 67.9 10.0 34 48-81 167-200 (451)
283 PRK13512 coenzyme A disulfide 96.5 0.0026 5.5E-08 72.1 5.0 36 48-83 2-39 (438)
284 PRK06416 dihydrolipoamide dehy 96.5 0.012 2.7E-07 67.0 10.5 35 48-82 173-207 (462)
285 PRK09754 phenylpropionate diox 96.5 0.0029 6.4E-08 70.6 5.2 36 48-83 4-41 (396)
286 PRK05249 soluble pyridine nucl 96.5 0.013 2.8E-07 66.7 10.5 36 47-82 175-210 (461)
287 PF07156 Prenylcys_lyase: Pren 96.5 0.026 5.6E-07 62.1 12.1 62 236-298 117-188 (368)
288 KOG2852 Possible oxidoreductas 96.5 0.0011 2.3E-08 68.4 1.1 38 47-84 10-53 (380)
289 TIGR03452 mycothione_red mycot 96.4 0.014 3.1E-07 66.3 10.2 34 48-81 170-203 (452)
290 PTZ00318 NADH dehydrogenase-li 96.4 0.0037 8E-08 70.5 5.1 37 45-81 8-44 (424)
291 COG0446 HcaD Uncharacterized N 96.3 0.0037 8E-08 69.5 4.6 38 48-85 137-174 (415)
292 PF13434 K_oxygenase: L-lysine 96.2 0.011 2.4E-07 64.6 7.4 35 47-81 2-37 (341)
293 PRK06116 glutathione reductase 96.1 0.028 6E-07 63.9 10.7 34 48-81 168-201 (450)
294 COG1206 Gid NAD(FAD)-utilizing 95.8 0.0074 1.6E-07 63.5 3.6 34 48-81 4-37 (439)
295 COG0029 NadB Aspartate oxidase 95.6 0.0089 1.9E-07 66.4 3.2 32 49-81 9-40 (518)
296 KOG0405 Pyridine nucleotide-di 95.4 0.02 4.4E-07 60.7 5.2 43 45-87 18-60 (478)
297 COG4529 Uncharacterized protei 95.4 0.016 3.6E-07 64.4 4.7 37 48-84 2-41 (474)
298 TIGR02352 thiamin_ThiO glycine 95.3 0.51 1.1E-05 50.9 15.9 53 246-298 140-194 (337)
299 KOG4716 Thioredoxin reductase 95.3 0.016 3.4E-07 61.2 3.7 33 46-78 18-50 (503)
300 TIGR03169 Nterm_to_SelD pyridi 95.1 0.019 4E-07 63.3 4.1 33 49-81 1-36 (364)
301 PRK04965 NADH:flavorubredoxin 95.1 0.025 5.4E-07 62.7 5.1 33 48-80 3-37 (377)
302 COG0445 GidA Flavin-dependent 95.1 0.016 3.4E-07 65.1 3.4 43 47-89 4-46 (621)
303 COG1252 Ndh NADH dehydrogenase 95.1 0.025 5.4E-07 62.6 4.9 35 47-81 3-39 (405)
304 TIGR03862 flavo_PP4765 unchara 95.0 0.42 9.2E-06 52.8 14.0 55 239-295 77-139 (376)
305 COG3634 AhpF Alkyl hydroperoxi 94.9 0.016 3.6E-07 61.3 2.6 40 45-86 209-248 (520)
306 PRK09754 phenylpropionate diox 94.9 0.03 6.5E-07 62.5 4.8 36 48-83 145-180 (396)
307 PRK01438 murD UDP-N-acetylmura 94.7 0.036 7.9E-07 63.5 5.1 33 48-80 17-49 (480)
308 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.04 8.7E-07 53.1 4.4 32 49-80 1-32 (157)
309 PRK02705 murD UDP-N-acetylmura 94.3 0.043 9.4E-07 62.5 4.7 34 49-82 2-35 (459)
310 PRK07251 pyridine nucleotide-d 94.2 0.055 1.2E-06 61.2 5.1 36 47-82 157-192 (438)
311 PRK14989 nitrite reductase sub 94.0 0.058 1.3E-06 65.9 5.0 36 48-83 4-43 (847)
312 KOG0404 Thioredoxin reductase 94.0 0.14 3E-06 51.4 6.6 43 48-90 9-55 (322)
313 PF02737 3HCDH_N: 3-hydroxyacy 94.0 0.069 1.5E-06 52.8 4.6 32 49-80 1-32 (180)
314 PRK05976 dihydrolipoamide dehy 93.8 0.068 1.5E-06 61.2 4.9 35 48-82 181-215 (472)
315 TIGR02374 nitri_red_nirB nitri 93.6 0.063 1.4E-06 65.3 4.4 47 249-295 188-236 (785)
316 PF03721 UDPG_MGDP_dh_N: UDP-g 93.6 0.066 1.4E-06 53.2 3.8 33 48-80 1-33 (185)
317 KOG3855 Monooxygenase involved 93.5 0.07 1.5E-06 58.1 3.8 35 46-80 35-73 (481)
318 KOG1238 Glucose dehydrogenase/ 93.4 0.075 1.6E-06 61.2 4.3 38 45-82 55-93 (623)
319 TIGR02053 MerA mercuric reduct 93.4 0.093 2E-06 59.9 5.0 35 48-82 167-201 (463)
320 KOG3923 D-aspartate oxidase [A 93.2 0.065 1.4E-06 55.9 3.1 33 47-79 3-42 (342)
321 COG1249 Lpd Pyruvate/2-oxoglut 93.0 0.12 2.7E-06 58.4 5.2 36 47-82 173-208 (454)
322 PRK06912 acoL dihydrolipoamide 93.0 0.12 2.5E-06 59.0 5.1 35 48-82 171-205 (458)
323 PRK06370 mercuric reductase; V 93.0 0.12 2.6E-06 59.0 5.2 36 48-83 172-207 (463)
324 PRK06115 dihydrolipoamide dehy 92.9 0.13 2.7E-06 58.9 5.2 36 47-82 174-209 (466)
325 TIGR01421 gluta_reduc_1 glutat 92.9 0.13 2.7E-06 58.6 5.2 35 48-82 167-201 (450)
326 PF13434 K_oxygenase: L-lysine 92.9 0.9 1.9E-05 49.7 11.6 40 256-295 293-339 (341)
327 PRK06467 dihydrolipoamide dehy 92.9 0.12 2.7E-06 59.1 5.1 35 48-82 175-209 (471)
328 PRK06292 dihydrolipoamide dehy 92.7 0.14 3E-06 58.4 5.2 37 47-83 169-205 (460)
329 TIGR03385 CoA_CoA_reduc CoA-di 92.7 0.14 3.1E-06 57.6 5.2 35 48-82 138-172 (427)
330 PRK06129 3-hydroxyacyl-CoA deh 92.7 0.12 2.6E-06 55.6 4.4 33 48-80 3-35 (308)
331 PRK07818 dihydrolipoamide dehy 92.6 0.14 3.1E-06 58.5 5.1 35 48-82 173-207 (466)
332 PRK14106 murD UDP-N-acetylmura 92.6 0.14 3E-06 58.2 5.0 34 47-80 5-38 (450)
333 PRK13512 coenzyme A disulfide 92.6 0.13 2.8E-06 58.3 4.6 36 48-83 149-184 (438)
334 PF01262 AlaDh_PNT_C: Alanine 92.6 0.16 3.5E-06 49.5 4.7 33 48-80 21-53 (168)
335 COG0686 Ald Alanine dehydrogen 92.4 0.15 3.2E-06 53.7 4.2 46 47-92 168-221 (371)
336 KOG3851 Sulfide:quinone oxidor 92.3 0.12 2.7E-06 54.3 3.7 61 20-80 12-74 (446)
337 PF02558 ApbA: Ketopantoate re 92.3 0.18 4E-06 47.8 4.7 31 50-80 1-31 (151)
338 PRK06327 dihydrolipoamide dehy 92.3 0.16 3.5E-06 58.2 5.0 35 48-82 184-218 (475)
339 KOG0042 Glycerol-3-phosphate d 92.3 0.059 1.3E-06 60.4 1.3 39 46-84 66-104 (680)
340 KOG2311 NAD/FAD-utilizing prot 92.2 0.13 2.9E-06 56.8 3.8 39 45-83 26-65 (679)
341 PF13738 Pyr_redox_3: Pyridine 92.2 0.15 3.2E-06 50.8 4.0 34 47-80 167-200 (203)
342 TIGR02374 nitri_red_nirB nitri 91.8 0.18 3.8E-06 61.5 4.8 36 48-83 141-176 (785)
343 PRK09564 coenzyme A disulfide 91.8 0.22 4.7E-06 56.5 5.2 34 48-81 150-183 (444)
344 PRK08293 3-hydroxybutyryl-CoA 91.7 0.19 4.1E-06 53.5 4.4 33 48-80 4-36 (287)
345 PRK09260 3-hydroxybutyryl-CoA 91.5 0.21 4.5E-06 53.3 4.3 33 48-80 2-34 (288)
346 TIGR03140 AhpF alkyl hydropero 91.4 0.22 4.8E-06 57.7 4.8 34 47-80 352-385 (515)
347 PRK07845 flavoprotein disulfid 91.3 0.25 5.3E-06 56.5 5.1 36 48-83 178-213 (466)
348 PRK07819 3-hydroxybutyryl-CoA 91.3 0.21 4.5E-06 53.3 4.1 33 48-80 6-38 (286)
349 cd01080 NAD_bind_m-THF_DH_Cycl 91.2 0.29 6.4E-06 47.7 4.8 34 46-79 43-77 (168)
350 PRK07066 3-hydroxybutyryl-CoA 91.2 0.23 5E-06 53.7 4.4 33 48-80 8-40 (321)
351 TIGR01470 cysG_Nterm siroheme 91.2 0.3 6.5E-06 49.3 5.0 34 47-80 9-42 (205)
352 PRK14989 nitrite reductase sub 91.0 0.24 5.2E-06 60.6 4.8 36 48-83 146-181 (847)
353 PTZ00058 glutathione reductase 90.9 0.27 5.8E-06 57.4 4.9 36 47-82 237-272 (561)
354 PTZ00153 lipoamide dehydrogena 90.9 0.27 5.9E-06 58.4 4.9 36 48-83 313-348 (659)
355 TIGR01424 gluta_reduc_2 glutat 90.9 0.29 6.3E-06 55.6 5.0 34 48-81 167-200 (446)
356 PRK07530 3-hydroxybutyryl-CoA 90.7 0.32 6.9E-06 51.9 4.9 32 48-79 5-36 (292)
357 COG0569 TrkA K+ transport syst 90.7 0.29 6.2E-06 50.2 4.4 66 48-129 1-66 (225)
358 PRK05708 2-dehydropantoate 2-r 90.5 0.33 7.2E-06 52.2 4.9 33 47-79 2-34 (305)
359 PRK15317 alkyl hydroperoxide r 90.4 0.3 6.5E-06 56.6 4.8 34 47-80 351-384 (517)
360 TIGR01316 gltA glutamate synth 90.4 0.32 6.9E-06 55.3 4.9 34 47-80 272-305 (449)
361 PF01488 Shikimate_DH: Shikima 90.4 0.48 1E-05 44.4 5.2 33 47-79 12-45 (135)
362 PLN02507 glutathione reductase 90.3 0.34 7.3E-06 55.9 5.0 34 48-81 204-237 (499)
363 PRK10262 thioredoxin reductase 90.3 0.35 7.6E-06 52.2 4.8 34 47-80 146-179 (321)
364 PRK06249 2-dehydropantoate 2-r 90.2 0.41 8.9E-06 51.6 5.3 32 48-79 6-37 (313)
365 PRK04690 murD UDP-N-acetylmura 90.2 0.33 7.2E-06 55.5 4.8 34 48-81 9-42 (468)
366 PF13241 NAD_binding_7: Putati 90.1 0.23 5.1E-06 44.2 2.8 33 47-79 7-39 (103)
367 KOG2755 Oxidoreductase [Genera 90.1 0.18 3.9E-06 51.8 2.2 33 49-81 1-35 (334)
368 PRK08010 pyridine nucleotide-d 90.0 0.39 8.5E-06 54.4 5.2 35 48-82 159-193 (441)
369 TIGR03143 AhpF_homolog putativ 90.0 0.34 7.4E-06 56.6 4.7 35 47-81 143-177 (555)
370 PRK06522 2-dehydropantoate 2-r 89.9 0.37 8E-06 51.5 4.6 32 48-79 1-32 (304)
371 TIGR01763 MalateDH_bact malate 89.8 0.43 9.2E-06 51.4 5.0 33 48-80 2-35 (305)
372 PRK09424 pntA NAD(P) transhydr 89.8 0.67 1.5E-05 53.2 6.7 34 47-80 165-198 (509)
373 PRK06035 3-hydroxyacyl-CoA deh 89.8 0.35 7.5E-06 51.6 4.3 33 48-80 4-36 (291)
374 PRK12770 putative glutamate sy 89.6 0.42 9.1E-06 52.4 4.8 33 48-80 173-206 (352)
375 PRK12921 2-dehydropantoate 2-r 89.6 0.4 8.8E-06 51.3 4.6 31 48-78 1-31 (305)
376 PRK12831 putative oxidoreducta 89.4 0.43 9.3E-06 54.5 4.9 34 47-80 281-314 (464)
377 PLN02546 glutathione reductase 89.4 0.44 9.5E-06 55.7 5.0 36 47-82 252-287 (558)
378 COG1004 Ugd Predicted UDP-gluc 89.3 0.4 8.7E-06 52.4 4.2 33 48-80 1-33 (414)
379 COG0771 MurD UDP-N-acetylmuram 89.3 0.39 8.6E-06 53.9 4.3 36 47-82 7-42 (448)
380 PRK05808 3-hydroxybutyryl-CoA 89.1 0.42 9.1E-06 50.7 4.3 33 48-80 4-36 (282)
381 PRK06718 precorrin-2 dehydroge 89.1 0.58 1.3E-05 47.1 5.0 33 47-79 10-42 (202)
382 TIGR01292 TRX_reduct thioredox 89.1 0.49 1.1E-05 50.0 4.8 34 47-80 141-174 (300)
383 TIGR00518 alaDH alanine dehydr 89.0 0.51 1.1E-05 52.2 4.9 32 48-79 168-199 (370)
384 TIGR01423 trypano_reduc trypan 88.8 0.5 1.1E-05 54.3 4.9 35 48-82 188-225 (486)
385 PRK08229 2-dehydropantoate 2-r 88.8 0.5 1.1E-05 51.5 4.7 32 48-79 3-34 (341)
386 PRK01710 murD UDP-N-acetylmura 88.8 0.51 1.1E-05 53.8 4.9 33 48-80 15-47 (458)
387 cd05292 LDH_2 A subgroup of L- 88.7 0.53 1.1E-05 50.7 4.7 33 48-80 1-35 (308)
388 PRK04148 hypothetical protein; 88.6 0.43 9.2E-06 44.6 3.4 33 48-81 18-50 (134)
389 PRK11064 wecC UDP-N-acetyl-D-m 88.5 0.45 9.8E-06 53.5 4.2 33 48-80 4-36 (415)
390 PRK14619 NAD(P)H-dependent gly 88.4 0.66 1.4E-05 49.9 5.3 34 47-80 4-37 (308)
391 TIGR02354 thiF_fam2 thiamine b 88.4 0.65 1.4E-05 46.7 4.8 33 47-79 21-54 (200)
392 TIGR03026 NDP-sugDHase nucleot 88.3 0.46 1E-05 53.4 4.1 33 48-80 1-33 (411)
393 COG3634 AhpF Alkyl hydroperoxi 88.3 0.37 7.9E-06 51.4 2.9 35 46-80 353-387 (520)
394 PRK13748 putative mercuric red 88.3 0.57 1.2E-05 54.8 5.0 32 48-79 271-302 (561)
395 PRK04308 murD UDP-N-acetylmura 88.2 0.63 1.4E-05 52.8 5.2 34 48-81 6-39 (445)
396 PRK06719 precorrin-2 dehydroge 88.1 0.71 1.5E-05 44.5 4.7 31 47-77 13-43 (157)
397 PRK14694 putative mercuric red 88.1 0.65 1.4E-05 53.1 5.2 31 48-78 179-209 (468)
398 PRK03369 murD UDP-N-acetylmura 88.0 0.61 1.3E-05 53.7 4.9 33 47-79 12-44 (488)
399 PRK14727 putative mercuric red 87.8 0.65 1.4E-05 53.3 5.0 41 255-295 241-281 (479)
400 PLN02545 3-hydroxybutyryl-CoA 87.7 0.66 1.4E-05 49.6 4.7 33 48-80 5-37 (295)
401 PTZ00052 thioredoxin reductase 87.7 0.68 1.5E-05 53.4 5.1 31 48-78 183-213 (499)
402 PRK02472 murD UDP-N-acetylmura 87.7 0.66 1.4E-05 52.6 4.9 33 48-80 6-38 (447)
403 PRK06130 3-hydroxybutyryl-CoA 87.6 0.62 1.4E-05 50.1 4.5 33 48-80 5-37 (311)
404 COG1748 LYS9 Saccharopine dehy 87.5 0.83 1.8E-05 50.4 5.3 46 48-93 2-56 (389)
405 PRK14618 NAD(P)H-dependent gly 87.4 0.75 1.6E-05 49.9 4.9 33 48-80 5-37 (328)
406 TIGR01438 TGR thioredoxin and 87.0 0.7 1.5E-05 53.1 4.6 31 48-78 181-211 (484)
407 PRK01368 murD UDP-N-acetylmura 87.0 0.66 1.4E-05 52.8 4.4 32 47-79 6-37 (454)
408 PTZ00318 NADH dehydrogenase-li 86.9 0.81 1.8E-05 51.6 5.0 35 48-82 174-222 (424)
409 KOG4405 GDP dissociation inhib 86.8 0.66 1.4E-05 50.6 3.9 46 47-92 8-53 (547)
410 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.7 0.75 1.6E-05 53.0 4.7 33 48-80 6-38 (503)
411 TIGR01318 gltD_gamma_fam gluta 86.5 1.6 3.4E-05 50.0 7.2 64 14-80 252-316 (467)
412 PRK00094 gpsA NAD(P)H-dependen 86.3 0.87 1.9E-05 49.1 4.7 32 48-79 2-33 (325)
413 TIGR00561 pntA NAD(P) transhyd 86.3 1.7 3.7E-05 49.8 7.1 33 48-80 165-197 (511)
414 PRK11749 dihydropyrimidine deh 86.2 0.9 2E-05 51.8 5.0 34 47-80 273-307 (457)
415 PRK08268 3-hydroxy-acyl-CoA de 86.0 0.86 1.9E-05 52.6 4.7 34 48-81 8-41 (507)
416 PRK00421 murC UDP-N-acetylmura 86.0 0.8 1.7E-05 52.2 4.4 34 47-80 7-41 (461)
417 PRK08306 dipicolinate synthase 86.0 1 2.2E-05 48.2 4.9 34 47-80 152-185 (296)
418 cd01075 NAD_bind_Leu_Phe_Val_D 85.9 1.1 2.5E-05 44.9 5.0 33 48-80 29-61 (200)
419 PF03446 NAD_binding_2: NAD bi 85.7 1 2.3E-05 43.5 4.4 33 48-80 2-34 (163)
420 PRK07531 bifunctional 3-hydrox 85.5 0.87 1.9E-05 52.5 4.4 33 48-80 5-37 (495)
421 PRK14620 NAD(P)H-dependent gly 85.5 1 2.2E-05 48.9 4.7 32 48-79 1-32 (326)
422 PRK12549 shikimate 5-dehydroge 85.3 1.2 2.5E-05 47.5 4.9 32 48-79 128-160 (284)
423 PRK12778 putative bifunctional 85.2 1 2.2E-05 54.8 5.0 34 47-80 570-604 (752)
424 cd05191 NAD_bind_amino_acid_DH 85.1 1.6 3.5E-05 37.3 4.8 31 48-78 24-55 (86)
425 PRK02006 murD UDP-N-acetylmura 85.1 1 2.2E-05 51.9 4.8 33 48-80 8-40 (498)
426 PRK11730 fadB multifunctional 85.1 0.83 1.8E-05 55.1 4.1 34 47-80 313-346 (715)
427 PRK15057 UDP-glucose 6-dehydro 85.0 1 2.2E-05 50.1 4.5 31 49-80 2-32 (388)
428 cd05311 NAD_bind_2_malic_enz N 85.0 1.3 2.7E-05 45.5 4.8 32 48-79 26-60 (226)
429 PRK07417 arogenate dehydrogena 84.9 1.1 2.3E-05 47.6 4.4 32 49-80 2-33 (279)
430 PRK05675 sdhA succinate dehydr 84.6 16 0.00035 42.9 14.4 49 247-295 126-187 (570)
431 PRK00141 murD UDP-N-acetylmura 84.3 1.2 2.7E-05 51.0 4.9 32 48-79 16-47 (473)
432 TIGR02437 FadB fatty oxidation 84.3 1.1 2.3E-05 54.1 4.6 35 46-80 312-346 (714)
433 PTZ00082 L-lactate dehydrogena 84.3 1.4 3.1E-05 47.7 5.1 35 47-81 6-41 (321)
434 COG1893 ApbA Ketopantoate redu 84.3 1.2 2.6E-05 48.0 4.5 33 48-80 1-33 (307)
435 cd00401 AdoHcyase S-adenosyl-L 84.1 1.3 2.9E-05 49.5 4.9 34 47-80 202-235 (413)
436 COG1250 FadB 3-hydroxyacyl-CoA 84.0 1.1 2.4E-05 47.9 4.0 32 48-79 4-35 (307)
437 TIGR02023 BchP-ChlP geranylger 84.0 55 0.0012 36.2 17.8 37 454-490 264-303 (388)
438 KOG1335 Dihydrolipoamide dehyd 83.9 0.52 1.1E-05 51.0 1.5 37 48-84 212-248 (506)
439 PF00899 ThiF: ThiF family; I 83.9 1.1 2.3E-05 41.9 3.5 33 47-79 2-35 (135)
440 TIGR02853 spore_dpaA dipicolin 83.8 1.5 3.2E-05 46.8 4.9 34 47-80 151-184 (287)
441 PRK06223 malate dehydrogenase; 83.4 1.5 3.2E-05 47.2 4.8 33 48-80 3-36 (307)
442 PLN02353 probable UDP-glucose 83.4 1.3 2.8E-05 50.6 4.5 33 48-80 2-36 (473)
443 PRK15116 sulfur acceptor prote 83.2 1.6 3.4E-05 46.0 4.7 33 47-79 30-63 (268)
444 TIGR02441 fa_ox_alpha_mit fatt 83.1 1.2 2.5E-05 53.9 4.2 34 47-80 335-368 (737)
445 COG1252 Ndh NADH dehydrogenase 83.0 0.74 1.6E-05 51.2 2.3 39 256-296 223-261 (405)
446 KOG2304 3-hydroxyacyl-CoA dehy 83.0 1.2 2.7E-05 44.8 3.6 34 47-80 11-44 (298)
447 cd05291 HicDH_like L-2-hydroxy 82.3 1.7 3.7E-05 46.8 4.7 32 49-80 2-35 (306)
448 PRK01390 murD UDP-N-acetylmura 82.2 1.5 3.3E-05 49.9 4.6 32 48-79 10-41 (460)
449 PF00056 Ldh_1_N: lactate/mala 82.0 2.2 4.8E-05 40.3 4.8 33 48-80 1-36 (141)
450 TIGR01915 npdG NADPH-dependent 81.8 1.8 3.9E-05 44.0 4.5 32 48-79 1-33 (219)
451 TIGR00507 aroE shikimate 5-deh 81.8 1.9 4.2E-05 45.4 4.8 33 47-79 117-149 (270)
452 PF02254 TrkA_N: TrkA-N domain 81.7 2.2 4.9E-05 38.3 4.6 31 50-80 1-31 (116)
453 cd01078 NAD_bind_H4MPT_DH NADP 81.5 2.2 4.8E-05 42.4 5.0 32 48-79 29-61 (194)
454 PRK00683 murD UDP-N-acetylmura 81.5 1.7 3.7E-05 48.9 4.5 32 48-79 4-35 (418)
455 TIGR02440 FadJ fatty oxidation 81.5 1.8 4E-05 52.0 5.1 34 47-80 304-338 (699)
456 TIGR01505 tartro_sem_red 2-hyd 81.2 1.7 3.7E-05 46.2 4.3 32 49-80 1-32 (291)
457 PRK12779 putative bifunctional 81.2 1.8 3.8E-05 53.9 4.9 34 47-80 447-480 (944)
458 PRK03803 murD UDP-N-acetylmura 81.0 1.7 3.8E-05 49.3 4.5 33 48-80 7-39 (448)
459 PRK12548 shikimate 5-dehydroge 80.9 2.4 5.1E-05 45.3 5.2 34 47-80 126-160 (289)
460 PTZ00117 malate dehydrogenase; 80.9 2.2 4.8E-05 46.2 5.0 35 46-80 4-39 (319)
461 PRK07688 thiamine/molybdopteri 80.9 2.2 4.7E-05 46.7 4.9 33 47-79 24-57 (339)
462 PRK11154 fadJ multifunctional 80.9 2.1 4.6E-05 51.6 5.3 34 47-80 309-343 (708)
463 PRK12475 thiamine/molybdopteri 80.7 2.2 4.7E-05 46.6 4.9 33 47-79 24-57 (338)
464 TIGR01790 carotene-cycl lycope 80.6 95 0.0021 34.1 18.9 41 256-297 99-141 (388)
465 TIGR00936 ahcY adenosylhomocys 80.2 2.2 4.8E-05 47.6 4.8 34 47-80 195-228 (406)
466 cd01065 NAD_bind_Shikimate_DH 80.1 2.8 6.1E-05 39.7 5.0 33 48-80 20-53 (155)
467 PLN02172 flavin-containing mon 80.1 1.7 3.7E-05 49.6 4.0 34 46-79 203-236 (461)
468 PRK05562 precorrin-2 dehydroge 80.0 2.6 5.5E-05 43.1 4.8 32 46-77 24-55 (223)
469 PRK03815 murD UDP-N-acetylmura 79.9 1.9 4.2E-05 48.2 4.3 31 48-79 1-31 (401)
470 PRK12814 putative NADPH-depend 79.8 2.2 4.7E-05 51.0 4.9 39 454-494 467-505 (652)
471 PF01494 FAD_binding_3: FAD bi 79.8 2.7 5.8E-05 45.2 5.3 43 256-298 125-173 (356)
472 cd01339 LDH-like_MDH L-lactate 79.7 2 4.4E-05 46.0 4.2 31 50-80 1-32 (300)
473 PRK03806 murD UDP-N-acetylmura 79.5 2.3 5.1E-05 48.0 4.9 33 48-80 7-39 (438)
474 TIGR02356 adenyl_thiF thiazole 79.4 2.9 6.2E-05 42.1 4.9 33 47-79 21-54 (202)
475 KOG2495 NADH-dehydrogenase (ub 79.4 1 2.3E-05 49.5 1.8 36 45-80 216-265 (491)
476 PRK00066 ldh L-lactate dehydro 79.3 2.8 6E-05 45.3 5.1 35 46-80 5-41 (315)
477 cd05293 LDH_1 A subgroup of L- 79.0 2.9 6.3E-05 45.1 5.1 34 47-80 3-38 (312)
478 PRK12810 gltD glutamate syntha 79.0 2.6 5.6E-05 48.3 5.0 38 454-493 431-468 (471)
479 PRK08644 thiamine biosynthesis 78.9 3 6.6E-05 42.3 5.0 32 48-79 29-61 (212)
480 PRK12769 putative oxidoreducta 78.8 4.8 0.0001 48.2 7.4 36 454-491 618-653 (654)
481 cd01487 E1_ThiF_like E1_ThiF_l 78.2 3.2 6.8E-05 40.8 4.7 31 49-79 1-32 (174)
482 PF13478 XdhC_C: XdhC Rossmann 78.1 2.4 5.1E-05 39.9 3.6 31 50-80 1-31 (136)
483 PRK09496 trkA potassium transp 78.0 2.7 5.8E-05 47.7 4.8 33 48-80 1-33 (453)
484 PRK11559 garR tartronate semia 77.9 2.8 6E-05 44.7 4.6 33 48-80 3-35 (296)
485 PRK00258 aroE shikimate 5-dehy 77.8 3.1 6.8E-05 44.0 4.9 33 47-79 123-156 (278)
486 TIGR02355 moeB molybdopterin s 77.8 3.2 6.9E-05 43.0 4.8 33 47-79 24-57 (240)
487 TIGR01317 GOGAT_sm_gam glutama 77.8 3 6.4E-05 48.0 5.0 35 47-81 283-318 (485)
488 PRK05690 molybdopterin biosynt 77.5 3.1 6.7E-05 43.3 4.7 33 47-79 32-65 (245)
489 PRK05476 S-adenosyl-L-homocyst 77.5 3.1 6.7E-05 46.7 4.9 34 47-80 212-245 (425)
490 PRK15461 NADH-dependent gamma- 77.3 2.8 6E-05 44.9 4.4 33 48-80 2-34 (296)
491 PF00670 AdoHcyase_NAD: S-aden 77.3 2.8 6.2E-05 40.5 3.9 33 48-80 24-56 (162)
492 TIGR01087 murD UDP-N-acetylmur 77.1 2.7 5.7E-05 47.5 4.3 32 49-80 1-32 (433)
493 PLN02520 bifunctional 3-dehydr 76.8 3.1 6.8E-05 48.3 4.9 33 47-79 379-411 (529)
494 TIGR01809 Shik-DH-AROM shikima 76.5 3.5 7.6E-05 43.8 4.8 33 47-79 125-158 (282)
495 PRK08328 hypothetical protein; 76.5 3.4 7.4E-05 42.5 4.6 31 48-78 28-59 (231)
496 TIGR00872 gnd_rel 6-phosphoglu 76.5 3.2 7E-05 44.4 4.6 32 49-80 2-33 (298)
497 PRK12439 NAD(P)H-dependent gly 76.4 4 8.6E-05 44.7 5.3 34 44-78 4-37 (341)
498 PRK11199 tyrA bifunctional cho 75.6 3.4 7.4E-05 45.8 4.6 32 48-79 99-131 (374)
499 PRK14027 quinate/shikimate deh 75.4 4 8.8E-05 43.4 4.9 33 47-79 127-160 (283)
500 PRK09599 6-phosphogluconate de 75.4 3.6 7.9E-05 44.0 4.6 32 49-80 2-33 (301)
No 1
>PLN03000 amine oxidase
Probab=100.00 E-value=1.1e-116 Score=1020.96 Aligned_cols=707 Identities=73% Similarity=1.179 Sum_probs=632.7
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhhcCCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
++..|+.+|.+|+..+|+||++|||||+|.+..+....+... ...+|+|||||++||+||+.|++.|++|+|||++++
T Consensus 141 a~~~~~~~~~~l~~~~~~~L~r~G~in~g~~~~~~~~~~~~~--~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 141 FLGSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQS--SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred HhhhcchhHHHHHHHHHHHHHHcCcccHHHHHHHHhhccccC--CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 457788999999999999999999999999988876555432 348999999999999999999999999999999999
Q ss_pred cceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccCchhhHHHHHHHHHH
Q 004684 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (737)
Q Consensus 82 ~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (737)
+|||++|.+..+. ..++.+|+|++|+++.+.|++..+++++|++.+.....+.+|..+|+.++...+......+..+
T Consensus 219 iGGRi~T~~~~g~---~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~fn~l 295 (881)
T PLN03000 219 PGGRVYTKKMEAN---RVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQL 295 (881)
T ss_pred CCCCcceecccCC---CCceEeecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchhhhhhHHHHHHHH
Confidence 9999999998753 3346899999999999999999999999999888777788899999988766666666677888
Q ss_pred HHHHHHHHHHhhhhccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeee
Q 004684 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (737)
Q Consensus 162 l~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~ 241 (737)
++.+.+++........+.++.++++.+.++.......+.+.++.|++..+++.++..+..++..+|.+...+..++.+++
T Consensus 296 Ld~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~ 375 (881)
T PLN03000 296 LDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCF 375 (881)
T ss_pred HHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEE
Confidence 87777777766666778899988888888877778888888899999999998888888899888887666666778899
Q ss_pred cCCCHHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcC
Q 004684 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (737)
Q Consensus 242 ~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (737)
++||+++|+++|++.++|++|++|++|.+++++|.|++++++++||+||+|+|+.+|+...|.|.|+||+.+.++|++++
T Consensus 376 v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 455 (881)
T PLN03000 376 LPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455 (881)
T ss_pred eCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988667899999999999999997679999999999999999999
Q ss_pred CcceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHH
Q 004684 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (737)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (737)
|+.+.||++.|+++||+.+...||.+.+++..++.+++++++..+.+.++|++|+.|+.+..++.++++++++.++++|+
T Consensus 456 ~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lr 535 (881)
T PLN03000 456 FGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILR 535 (881)
T ss_pred CcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHH
Confidence 99999999999999999887889998776655667777777776678889999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHH
Q 004684 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (737)
Q Consensus 402 ~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (737)
++|++.+.+++.|+.+.+++|..+||+.|+|+++.||+...+++.+++|+++++||||||+|+..|+||||||+.||+||
T Consensus 536 kifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRA 615 (881)
T PLN03000 536 GIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLRE 615 (881)
T ss_pred HHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHH
Confidence 99986545678999999999999999999999999999888899999998668999999999988999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccCCCCCchhhhhhhhhhccCCCCCCCCCeEEeccCCCCCCCCccEEEEEEcCCCCCCCC--
Q 004684 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHG-- 559 (737)
Q Consensus 482 A~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 559 (737)
|.+|+..++.+...+ +++..++++.+.++..|.|||++||+|||+|||||++.++||+|++||||+|+++++++..
T Consensus 616 A~eIl~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (881)
T PLN03000 616 AANMAQSAKARGIRK--RIDRNPSKNAHSCAILLADLFRDPDLEFGSFAIIFSRRNPDPKSPAILRVTLSEPRKRNEDPK 693 (881)
T ss_pred HHHHHHHhhhccCCc--ccccCccccccchhHHHHHHhhCcCccccceEEEecCCCCCCCCceeEEEEeccccccccccc
Confidence 999999999998886 8999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHhhcCceeeecCCCCCChhHHHHHHHHHh
Q 004684 560 DQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAER 639 (737)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (737)
.|+||||.+|||+|+||++|++|||||+||||||.||+++++|||+||+|||++|||||||||+|+++|++|||+||++|
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (881)
T PLN03000 694 ADQHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLNYLCETLGVKLVGRKGLGPGADSVIASIKAER 773 (881)
T ss_pred hhhhhhhhhhccccccccCcceEEEEEEeeHHHHHHHHHhhCCcHHHHHHHHHhcCeeEeecccCCccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccccccccccccccccccccchhHHhHhhh-------heecccCCCcCCCCCCCCCCCccccccccccCCCC-----
Q 004684 640 -GIRKQTSTFSASKLGISKLKTGTLKQKMIRKA-------KIVRNVKKSVPSPNKLTAPPNLKVSSECMITNQVP----- 706 (737)
Q Consensus 640 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 706 (737)
..|++.+++.++|+||-...+++.|+|+|+.. .-+||.|.|||+-| || .|.....+++++|+.+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 850 (881)
T PLN03000 774 TGNKLPSSSTSGTKSGMKPKAAGSKRKKVVSNVGGLMPRNSNMRNGNSSIPPSN-NM--GNGSGLVPRPNLNMGNGSGLV 850 (881)
T ss_pred hcCCCCCccccccccCCCccccchhHHHHHHhccCcccCCccccCCCCCCCCCC-CC--CCCCCcccCCCcCcCCCCCcc
Confidence 56778899999999994444455777999832 36788999998655 89 8999999999999876
Q ss_pred CCCCcccccccc
Q 004684 707 PTSSCSVLVGSL 718 (737)
Q Consensus 707 ~~~~~~~~~~~~ 718 (737)
|++|-|--++-|
T Consensus 851 ~~~~~~~~~~~~ 862 (881)
T PLN03000 851 PSSNLNMTSGLL 862 (881)
T ss_pred cccccccccCCC
Confidence 345666555544
No 2
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.7e-97 Score=863.34 Aligned_cols=611 Identities=61% Similarity=1.018 Sum_probs=537.0
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhhcCCccccccc-CCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEK-IPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~-~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++..|+.+|.+|+.++|+||++|||||||+.|.+... ..........+|+|||||++||+||+.|++.|++|+|||+++
T Consensus 192 a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 192 ALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred HHhhcchhhHHHHHHHHHHHhccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4567888999999999999999999999999987632 121222345899999999999999999999999999999999
Q ss_pred CcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccCchhhHHHHHHHHH
Q 004684 81 RAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNR 160 (737)
Q Consensus 81 r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 160 (737)
++|||+.|.+..|. +..+.+|+|++|+++...|++..+++++|++.+.+...+.+++.+|..++...+......+..
T Consensus 272 r~GGr~~t~~~~g~---~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~dG~~~~~~~~~~v~~~f~~ 348 (808)
T PLN02328 272 RPGGRVKTMKMKGD---GVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNK 348 (808)
T ss_pred cCCCcccccccCCC---CcceeccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCCCcCcchhhhhhHHHHHHH
Confidence 99999999988764 334579999999999988999999999999988888778889999998876666666677788
Q ss_pred HHHHHHHHHHHhhhh--ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCC
Q 004684 161 LLDKASRLRQLMGEV--AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGD 238 (737)
Q Consensus 161 ll~~~~~~~~~~~~~--~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~ 238 (737)
+++...+++..+... ..+.++.++++.+....+...++..+.++.|++..+++.++..+..+++..|.+...+..++.
T Consensus 349 lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~ 428 (808)
T PLN02328 349 LLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD 428 (808)
T ss_pred HHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe
Confidence 887776665543322 347889999887766555566788889999999999999988899999888887666667778
Q ss_pred eeecCCCHHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHH
Q 004684 239 HCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIK 318 (737)
Q Consensus 239 ~~~~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~ 318 (737)
+++++||+++|+++|++.+.|++|++|++|.+++++|.|+.+|++++||+||+|+|+.+|++..|.|.|+||+.+.++|+
T Consensus 429 ~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~ 508 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508 (808)
T ss_pred EEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998866888999999999999999997678899999999999999
Q ss_pred hcCCcceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHH
Q 004684 319 RLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQ 398 (737)
Q Consensus 319 ~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~ 398 (737)
+++|+++.||++.|+++||......+|.+..+...++.+++++++....+.+++++|++|+.+..+..++++++++.+++
T Consensus 509 ~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~ 588 (808)
T PLN02328 509 RLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQ 588 (808)
T ss_pred cCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999877788888776666677778888777778899999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHH
Q 004684 399 ILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (737)
Q Consensus 399 ~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG 478 (737)
+|+++|++.+..++.|....+++|..+||++|+|+++.||+....++.+++|+++++||||||+|+..|+||||||+.||
T Consensus 589 ~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SG 668 (808)
T PLN02328 589 ILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSG 668 (808)
T ss_pred HHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHH
Confidence 99999986434567899999999999999999999999998877788999998668999999999988899999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccCCCCCchhhhhhhhhhccCCCCCCCCCeEEeccCCCCCCCCccEEEEEEcCCCCCCC
Q 004684 479 LRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNH 558 (737)
Q Consensus 479 ~~AA~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (737)
++||++|++.++.+..+..++.+..++ ++..|.|||++||++||+|||||++.++||+|++||||+|+.+++++
T Consensus 669 lRAA~eIl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 742 (808)
T PLN02328 669 MREAANILRVARRRSLCIDDKVNNDEE-----EDDCLDQLFDTPDLTFGSFSILFDPRSNDPESLSLLRVKFQGEKPDS- 742 (808)
T ss_pred HHHHHHHHHHHhhcccCCcccccccch-----hhhHHHHHhcCcCccccceEEEecCCCCCCCCceeEEEEeccCCCCc-
Confidence 999999999998887764334444333 67889999999999999999999999999999999999999988853
Q ss_pred CCCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHhhcCceeeecCCCCCChhHHHHHHHHH
Q 004684 559 GDQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAE 638 (737)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (737)
++|||||+||||||.+|+++ +|||+||+|||++|||||||||+|+++|++|||+||++
T Consensus 743 ---------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
T PLN02328 743 ---------------------CFLCLYGLVSRKQAIELGEL-DDDGKRNEYLYEKFQVVLVGRKGLSQEGESLISSIKEA 800 (808)
T ss_pred ---------------------ccEEEEEeeeHHHHHHHHHc-CCcHHHHHHHHHhcCeEEeecccccccHHHHHHHHHHh
Confidence 56999999999999999998 89999999999999999999999999999999999999
Q ss_pred hcccc
Q 004684 639 RGIRK 643 (737)
Q Consensus 639 ~~~~~ 643 (737)
|+++.
T Consensus 801 ~~~~~ 805 (808)
T PLN02328 801 RLNLQ 805 (808)
T ss_pred hhccc
Confidence 98864
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=2.3e-97 Score=859.83 Aligned_cols=620 Identities=57% Similarity=0.965 Sum_probs=542.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhhcCCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
+++.+..++.++|..+|+||+++|+||+|+.|......+. ..+.+||+|||||++||+||+.|+++|++|+|||++++
T Consensus 117 a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~~~~~--~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 117 IKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFASPIPE--EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred HhhhchhhHHHHHHHHHHHHHhCCCcceeecccccCCCCc--ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4567889999999999999999999999999876543332 33458999999999999999999999999999999999
Q ss_pred cceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccCchhhHHHHHHHHHH
Q 004684 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (737)
Q Consensus 82 ~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (737)
+|||++|.+..+. +..+.+|+|++|+++.+.|++..+++++|++.+..+..+.+|..+|..++...+..+...+..+
T Consensus 195 ~GG~~~t~~~~~~---g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~ 271 (738)
T PLN02529 195 PGGRVYTQKMGRK---GQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKL 271 (738)
T ss_pred CcCceeeecccCC---CCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchhhhhhHHHHHHHH
Confidence 9999999987532 2235899999999999999999999999999888877788899999988776666555567777
Q ss_pred HHHHHHHHHHhhhhccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeee
Q 004684 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (737)
Q Consensus 162 l~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~ 241 (737)
++....+...+....++.|+.++++.+........++.+++++.|+...+++.++..++.+++.+|.+...+..++.+++
T Consensus 272 l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~ 351 (738)
T PLN02529 272 LDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCF 351 (738)
T ss_pred HHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEE
Confidence 77766665555545678899999987766555557788889999999888888888899999999987766777888999
Q ss_pred cCCCHHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcC
Q 004684 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (737)
Q Consensus 242 ~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (737)
+.||+++|+++|+++++|++|++|++|.+++++|+|++++++++||+||+|+|++++++..+.|.|+||+.+.+++++++
T Consensus 352 i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 431 (738)
T PLN02529 352 LAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLG 431 (738)
T ss_pred ECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988778899999999999999997678899999999999999999
Q ss_pred CcceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHH
Q 004684 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (737)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (737)
|+++.||++.|+++||+.+...+|.+......++.++++++++.+++.+++++|+.|+.+..+..++++++++.++++|+
T Consensus 432 yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~ 511 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLR 511 (738)
T ss_pred CceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998776678888765555666777777776667789999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHH
Q 004684 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (737)
Q Consensus 402 ~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (737)
++|++.+..++.|..+.+++|..+||++|+|+++.||+....++.+.+|+. ++||||||+|+..|+||||||+.||++|
T Consensus 512 ~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~-grL~FAGEaTs~~~pgtVeGAi~SG~RA 590 (738)
T PLN02529 512 GIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVS-GRLFFAGEATTRQYPATMHGAFLSGLRE 590 (738)
T ss_pred HHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCC-CCEEEEEHHHhCCCCeEeHHHHHHHHHH
Confidence 999865456788999999999999999999999998877666778888853 8999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccCCCCCchhhhhhhhhhccCCCCCCCCCeEEeccCCCCCCCCccEEEEEEcCCCCCCCCCC
Q 004684 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHGDQ 561 (737)
Q Consensus 482 A~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (737)
|++|++.++..... ..+...++...+++.|.|||++||++||+|||||+|.++||+|++||||+|+++++++
T Consensus 591 A~eIl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 662 (738)
T PLN02529 591 ASRILHVARSQQSN----SRKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIFNPLTEDPKSMGIMRVTFDNSGDDL---- 662 (738)
T ss_pred HHHHHHHHhhhhcc----chhhhhccCCcchHHHHHhhcCccccccceEEEecCCCCCCcCceeEEEEecCCCCCC----
Confidence 99999988665543 2334455666688999999999999999999999999999999999999999999853
Q ss_pred CCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHhhcCceeeecCCCCCChhHHHHHHHHHhcc
Q 004684 562 PHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAERGI 641 (737)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (737)
.++|||||+||||||.+|+...+|||+||+|||++||||||||++|+++|++|||+||++|++
T Consensus 663 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (738)
T PLN02529 663 -----------------NLPLQLYTVLSREQAHKLQLDEGSNESKLSCLMKNLGLKLMGPSSLVNTGGSLISTIANARRG 725 (738)
T ss_pred -----------------CccEEEEEeeeHHHHHHHHHHhCCcHHHHHHHHHhcCeeEeccccccchHHHHHHHHHHHhhc
Confidence 268999999999999999777899999999999999999999999999999999999999999
Q ss_pred ccccccccccc
Q 004684 642 RKQTSTFSASK 652 (737)
Q Consensus 642 ~~~~~~~~~~~ 652 (737)
|+|+++..+++
T Consensus 726 ~~~~~~~~~~~ 736 (738)
T PLN02529 726 RGRNRVVAGQC 736 (738)
T ss_pred cccceeccccC
Confidence 99988877665
No 4
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-53 Score=472.52 Aligned_cols=473 Identities=47% Similarity=0.764 Sum_probs=395.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHH
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~ 124 (737)
.++++|||||||+|||+||++|++.|++|+||||++|+|||++|.+..++ ..+|+|++|+++.+.|++..++++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~------~~vd~Gas~~~g~~~npl~~l~~q 86 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGG------DHVDLGASVLTGVYNNPLALLSKQ 86 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCC------CeeecCCceecCcCccHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999876 269999999999999999999999
Q ss_pred hCCCeeeecCCcceEecCCcccCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCHHHHHHHHHHHhccCCCH---
Q 004684 125 LGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAM---DVSLGSALETFWRVYWDSGNA--- 198 (737)
Q Consensus 125 LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---~~sl~~~l~~~~~~~~~~~~~--- 198 (737)
||++...+...++++...+.......+......+..++.....+...+..... ..++.+.+..+..........
T Consensus 87 lgl~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
T KOG0029|consen 87 LGLELYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLEL 166 (501)
T ss_pred hCcccceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHH
Confidence 99999999999999888886666666666667777777777777666555433 455555554433322211111
Q ss_pred ----HHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHHHcCCcccCceEEEEEecCCc
Q 004684 199 ----EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (737)
Q Consensus 199 ----~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~ 274 (737)
+....+.|++..++.........++...|.+...+...+.+....+|+..++..|+++++|+++..|..|.+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~ 246 (501)
T KOG0029|consen 167 LLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDG 246 (501)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCC
Confidence 3344778999999999888888889999998887776667888999999999999999999999999999999887
Q ss_pred -EEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecCCC
Q 004684 275 -VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSS 352 (737)
Q Consensus 275 -V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~ 352 (737)
+.+++ ++..+.+|+||+|+|+.+|+...|.|.|+||..+.++|++++.+.+.||.+.|++.||..+.+.||.+.+...
T Consensus 247 ~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~ 326 (501)
T KOG0029|consen 247 AVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSV 326 (501)
T ss_pred ceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEcccccc
Confidence 34444 5555999999999999999988899999999999999999999999999999999999988889999988777
Q ss_pred CCcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcC
Q 004684 353 SRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432 (737)
Q Consensus 353 ~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~y 432 (737)
.++.+ .|++.....+.+.+++++.++.++.+..++++++++.++..|+++|+ ...+++|++..+++|..+++..|+|
T Consensus 327 ~~~~~-~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~--~~~~~~p~~~~vt~w~~d~~~~gsy 403 (501)
T KOG0029|consen 327 LRGLF-TFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFG--SEEVPDPLDALVTRWGTDPLSGGSY 403 (501)
T ss_pred ccchh-hhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhc--cCcCCCccceeeeeecccccCCccc
Confidence 66654 66777777788899999999999999999999999999999999998 4568999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhh---hhhcccccccCCCCCchh
Q 004684 433 SNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA---RALRMKVKVGKIPSKNAY 509 (737)
Q Consensus 433 s~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~---~~~~~~~~~~~~~~~~~~ 509 (737)
++..++.....++.+.+|+. +++||||++|+..|+++|+||+.||.+||..|+..+.. .........+........
T Consensus 404 s~~~~~~~~~~y~~l~~pi~-~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (501)
T KOG0029|consen 404 SYVAVGSDGDDYDRLAEPIK-NRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIEILRAGALRRLEPEVTDELSIE 482 (501)
T ss_pred cccCCCCChhHHHHHhcccc-CcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHhhhhcccccccccccchhcccc
Confidence 99999988888899999983 35999999999999999999999999999999999874 222111113333343444
Q ss_pred hhhhhhhhccCCCCCCCCCe
Q 004684 510 SCASALTDLFREPDLEFGSF 529 (737)
Q Consensus 510 ~~~~~~~~~~~~p~~~~~~~ 529 (737)
.. .+...++.|.+.+|.+
T Consensus 483 ~~--~~~~~~~~~~~~~~~~ 500 (501)
T KOG0029|consen 483 LD--VLEQEARNPELISGLP 500 (501)
T ss_pred cc--hhhhhccccccccCCC
Confidence 33 6777888898887763
No 5
>PLN02976 amine oxidase
Probab=100.00 E-value=9.5e-51 Score=479.48 Aligned_cols=440 Identities=44% Similarity=0.773 Sum_probs=358.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCC--------cH
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--------NP 117 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~--------~~ 117 (737)
..++|+|||||++||+||+.|++.|++|+|||+++++||++++.+...+ +.+|+|++|+++... ++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g------~pvDlGas~i~G~~~nv~~~r~~np 765 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLS------VPVDLGASIITGVEADVATERRPDP 765 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCC------ceeccCcEEEecccccccccccccH
Confidence 4589999999999999999999999999999999999999999875322 489999999987533 67
Q ss_pred HHHHHHHhCCCeeeecCCcceEe-cCCcccCchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh----
Q 004684 118 LGILAKQLGSLLHKVRDKCPLYR-LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVY---- 192 (737)
Q Consensus 118 l~~L~~~LGl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~---- 192 (737)
+..+++++|+........++.|. .+|..++...+..+...|..+++..............+.+++++++....+.
T Consensus 766 ~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~ 845 (1713)
T PLN02976 766 SSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPR 845 (1713)
T ss_pred HHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccc
Confidence 77789999999877665555443 6788888887777777787777655543222222334667777776311110
Q ss_pred -----------------------------------ccCCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCC-CC
Q 004684 193 -----------------------------------WDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYD-MG 236 (737)
Q Consensus 193 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~~ 236 (737)
...+++..+.++.|++...++..+..+..+++.+|.+...|. .+
T Consensus 846 ~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fg 925 (1713)
T PLN02976 846 PGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFG 925 (1713)
T ss_pred cccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCC
Confidence 011233445566777777666666677778887777544332 35
Q ss_pred CCeeecCCCHHHHHHHHHHcCCcccCceEEEEEec----------CCcEEEEE-CCeEEEecEEEEccChhhhhcCCccc
Q 004684 237 GDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYG----------SDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKF 305 (737)
Q Consensus 237 g~~~~~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~----------~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~ 305 (737)
+..+.++||+++|+++|++++.|++|++|++|.+. +++|.|++ +|++++||+||+|+|+.+|+...+.|
T Consensus 926 G~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~F 1005 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKF 1005 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhccccc
Confidence 67888999999999999999999999999999984 45788888 88899999999999999998656899
Q ss_pred CCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhc
Q 004684 306 IPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFE 385 (737)
Q Consensus 306 ~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~ 385 (737)
.|+||..+.++|+.++|+.+.||++.|+++||+.+...||........++.++.+|+...+.+.++|++|+.|..+..+.
T Consensus 1006 sPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiE 1085 (1713)
T PLN02976 1006 SPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQ 1085 (1713)
T ss_pred CCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHh
Confidence 99999999999999999999999999999999987777886655444456666677666667778999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEecccccc
Q 004684 386 SMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIR 465 (737)
Q Consensus 386 ~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~ 465 (737)
.++++++++.++++|+++||.. .++.|..+.+++|..+||+.|+|++++||.....+..+.+|++ ++|||||++|+.
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~--~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVg-gRLFFAGEATS~ 1162 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEA--LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVE-NCLFFAGEATCK 1162 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcc--cccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCC-CcEEEEehhhhC
Confidence 9999999999999999999842 4578999999999999999999999999998878889999984 569999999999
Q ss_pred ccCceeeHHHHHHHHHHHHHHHHHhhhhh
Q 004684 466 RYPATMHGAFLSGLRETAKMAHCANARAL 494 (737)
Q Consensus 466 ~~~g~~eGAi~SG~~AA~~Il~~l~~~~~ 494 (737)
.|+||||||+.||.|||.+|+..+.....
T Consensus 1163 ~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1163 EHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 89999999999999999999999876544
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=5.4e-49 Score=442.79 Aligned_cols=420 Identities=35% Similarity=0.544 Sum_probs=311.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC-CCcHHHHHHHHhC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (737)
++|+|||||+|||+||+.|.++|++|+||||++|+|||++|.+..|. .+|+|++|+++. ..+++..|++++|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~-------~~d~G~~~i~~~~~~~~~~~l~~~lg 73 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGF-------PVDMGASWLHGVCNENPLAPLIGRLG 73 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCc-------ccCCCCeeEeccCCCchHHHHHHHhC
Confidence 47999999999999999999999999999999999999999876554 899999999875 3577888999999
Q ss_pred CCeeeecCCcceEe-----------cCCcccCchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhc-c
Q 004684 127 SLLHKVRDKCPLYR-----------LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYW-D 194 (737)
Q Consensus 127 l~~~~~~~~~~~~~-----------~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~-~ 194 (737)
++.........+.+ .++..++......+...+..++....... ....++.|+.++++.+..... .
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~ 150 (435)
T PLN02268 74 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVR---DEHEEDMSLLQAISIVLERHPEL 150 (435)
T ss_pred CceEeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccCCCcCHHHHHHHHhhhCccc
Confidence 98654332222111 11112222111222222222222222211 113467888888765543211 0
Q ss_pred CCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHHHcCCcccCceEEEEEecCCc
Q 004684 195 SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~ 274 (737)
.......+++.+++.......+.....++...+..... ..+.+..+.+|++.++++|+++++|++|++|++|..++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~--~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~ 228 (435)
T PLN02268 151 RLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEEL--LEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNG 228 (435)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccc--cCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCc
Confidence 11112333444333222222233334444444433211 1233567889999999999999999999999999999999
Q ss_pred EEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecCCCC
Q 004684 275 VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSS 353 (737)
Q Consensus 275 V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~ 353 (737)
|.|++ +|+++.||+||+|+|+.++++..+.|.|.||+.+.+++++++|+...||.+.|+++||++. ..+|.+.+...
T Consensus 229 v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~~- 306 (435)
T PLN02268 229 VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTSY- 306 (435)
T ss_pred EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCCC-
Confidence 99988 7888999999999999999865678899999999999999999999999999999999753 44555543221
Q ss_pred CcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCC
Q 004684 354 RGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYS 433 (737)
Q Consensus 354 ~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys 433 (737)
. ...+.+.....+..++++|+.+..+..+..++++++++.++++|.++|+. .+.|+...+++|..+||+.|+|+
T Consensus 307 -~-~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~----~~~p~~~~~~~W~~dp~~~G~~~ 380 (435)
T PLN02268 307 -G-CSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD----ATEPVQYLVSRWGSDPNSLGCYS 380 (435)
T ss_pred -C-ceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC----CCCccEEEecccCCCCCCCccCC
Confidence 1 12223333345677899999999999999999999999999999999963 35788999999999999999999
Q ss_pred CCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHH
Q 004684 434 NVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (737)
Q Consensus 434 ~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (737)
++.||+....++.+++|+ ++||||||+|+..|+||||||+.||++||++|++.|
T Consensus 381 ~~~~g~~~~~~~~l~~p~--~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 381 YDLVGKPHDLYERLRAPV--DNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCCCHHHHHHHhCCC--CCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 999998767788899998 889999999998889999999999999999999764
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=8.4e-47 Score=430.77 Aligned_cols=434 Identities=32% Similarity=0.438 Sum_probs=316.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-----CcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHH
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG-----FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGIL 121 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-----~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L 121 (737)
.+||+|||||+|||+||++|++.| ++|+|||+++++|||++|.+..|+ .+|.|++|+++...+++..|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~-------~~d~G~~~~~g~~~~~~~~l 77 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGE-------RIEMGATWIHGIGGSPVYKI 77 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCe-------EEecCCceeCCCCCCHHHHH
Confidence 489999999999999999999988 899999999999999999998776 99999999998878999999
Q ss_pred HHHhCCCeeeec--------CCcceEecCCcccCchhhHHHHHHHHHHHHHHHHHH---------------HHhh---hh
Q 004684 122 AKQLGSLLHKVR--------DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLR---------------QLMG---EV 175 (737)
Q Consensus 122 ~~~LGl~~~~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~---~~ 175 (737)
++++|+...... ....++..+|..++......+...+..+++...... .... ..
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (539)
T PLN02568 78 AQEAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCES 157 (539)
T ss_pred HHHhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhcc
Confidence 999998543221 123355667777766555555666666665443111 0000 01
Q ss_pred ccCCCHHHHHHH-HHHHhccCCCH------------HH-HHHHHHHHHhhhhhch--hhhhhHHHHhhccCCCCCCCCCe
Q 004684 176 AMDVSLGSALET-FWRVYWDSGNA------------EA-MNLFNWHLANLEYANA--SLLSKLSLAFWDQDDPYDMGGDH 239 (737)
Q Consensus 176 ~~~~sl~~~l~~-~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~--~~l~~ls~~~~~~~~~~~~~g~~ 239 (737)
..+.++.++++. +.........+ .. ...+.++ ..++.... ..+..++..... ......+.+
T Consensus 158 ~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~ls~ls~~~~~--~~~~~~g~~ 234 (539)
T PLN02568 158 GGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMH-ENTQRTYTSADDLSTLDLAAES--EYRMFPGEE 234 (539)
T ss_pred CCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHH-HHhhccccccccHhhccccccC--cceecCCCe
Confidence 123477777763 22211111111 00 1112111 22222111 122222221111 111234567
Q ss_pred eecCCCHHHHHHHHHHcCC---cccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcC----CcccCCCCCH
Q 004684 240 CFLPGGNGRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSG----SIKFIPELPQ 311 (737)
Q Consensus 240 ~~~~gG~~~Lv~aLa~gl~---I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~----~i~~~p~Lp~ 311 (737)
+.+++|++.|+++|++.++ |++|++|++|..++++|.|++ +|++++||+||+|+|+.+|+.. .+.|.|+||+
T Consensus 235 ~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~ 314 (539)
T PLN02568 235 ITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPD 314 (539)
T ss_pred EEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCH
Confidence 8899999999999999885 999999999999999999988 8889999999999999999863 2579999999
Q ss_pred HHHHHHHhcCCcceeEEEEEcCCccccCC-----CCCcceeecCCCC--C--cceEEE---eeccc-cCCCcEEEEEecc
Q 004684 312 RKLDAIKRLGYGLLNKVAMLFPYVFWETD-----LDTFGHLTDDSSS--R--GEFFLF---YSYAT-VAGGPLLIALVAG 378 (737)
Q Consensus 312 ~~~~ai~~l~~~~~~kV~l~f~~~~w~~~-----~~~~g~l~~~~~~--~--~~~~~~---~~~~~-p~g~~~L~~~v~g 378 (737)
.+.+++++++++.+.||++.|+++||... ...+..+...... + ...+++ ++... ..+.++|++|+.|
T Consensus 315 ~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G 394 (539)
T PLN02568 315 FKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAG 394 (539)
T ss_pred HHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEecc
Confidence 99999999999999999999999998642 1122222221110 0 001111 01111 2366799999999
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHhhcCCCCC-------------------CCCCCceEEEecCCCCCCCCCcCCCCCCCC
Q 004684 379 EAAHKFESMPPTDAVTKVLQILKGIYEPKGI-------------------NVPEPIQTVCTRWGGDPFSLGSYSNVAVGA 439 (737)
Q Consensus 379 ~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~-------------------~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~ 439 (737)
+.+..++.++++++++.+++.|+++|+.... ..+.|..+.+++|..+||++|+|++++||+
T Consensus 395 ~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~ 474 (539)
T PLN02568 395 KEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGS 474 (539)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCC
Confidence 9999999999999999999999999974311 124688999999999999999999999999
Q ss_pred CCCcHHHHhcccC-----------CCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHh
Q 004684 440 SGDDYDIMAESVG-----------DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 440 ~~~~~~~l~~pv~-----------~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
...++..+++|++ .++|||||++|+..|+++||||+.||+|||++|+..++
T Consensus 475 ~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 475 SGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 8878889999984 13799999999999999999999999999999998763
No 8
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.1e-46 Score=423.23 Aligned_cols=426 Identities=28% Similarity=0.492 Sum_probs=304.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecC---CCCcHHHHHH
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG---TLGNPLGILA 122 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~---~~~~~l~~L~ 122 (737)
.+||+|||||++||+||++|++.|+ +|+|||+++++|||+.+.+..|. .+|+|++|+++ ...+++..++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~~~l~ 98 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV-------SVELGANWVEGVGGPESNPIWELA 98 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe-------EEecCCEEEEcccCcccChHHHHH
Confidence 3899999999999999999999998 69999999999999999887665 99999999975 4468888899
Q ss_pred HHhCCCeeeecC---CcceEecCCcccCchhhHHHHHHHHHHHHHHHHHHHHh-hhhccCCCHHHHHHHHHHHhccCCCH
Q 004684 123 KQLGSLLHKVRD---KCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLM-GEVAMDVSLGSALETFWRVYWDSGNA 198 (737)
Q Consensus 123 ~~LGl~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~sl~~~l~~~~~~~~~~~~~ 198 (737)
+++|+....... ...++..+|+.++..........+..+......+.... ....++.++.+.. .+.... ....
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~--~~~~ 175 (487)
T PLN02676 99 NKLKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQ-RLFGQV--PKTP 175 (487)
T ss_pred HhcCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHH-HHHhhC--CCCH
Confidence 999998764321 23345567776643211111112222212111111111 1112344442221 111111 1111
Q ss_pred HHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCC-CCCCCeeec--CCCHHHHHHHHHHcC-----------CcccCce
Q 004684 199 EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPY-DMGGDHCFL--PGGNGRLVQALVENV-----------PILYEKT 264 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~-~~~g~~~~~--~gG~~~Lv~aLa~gl-----------~I~lnt~ 264 (737)
.... ..+.....+ .+.....+++.++.....+ ..++..+++ ++|+++|+++|++.+ +|++|++
T Consensus 176 ~~~~-~~~~~~~~~--~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~ 252 (487)
T PLN02676 176 LEMV-IDYYNYDYE--FAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKV 252 (487)
T ss_pred HHHH-HHHHhccce--eccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCE
Confidence 1111 111111111 1222223333332211111 233344555 689999999999854 4999999
Q ss_pred EEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCC
Q 004684 265 VHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDT 343 (737)
Q Consensus 265 V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~ 343 (737)
|++|..++++|+|++ +|++++||+||+|+|+.+|++..|.|.|+||..+.+++++++++.+.||++.|+++||++....
T Consensus 253 V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~ 332 (487)
T PLN02676 253 VREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGT 332 (487)
T ss_pred eeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCc
Confidence 999999999999988 7889999999999999999865699999999999999999999999999999999999863222
Q ss_pred cceeecCCCCCcceEEEee-ccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecC
Q 004684 344 FGHLTDDSSSRGEFFLFYS-YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRW 422 (737)
Q Consensus 344 ~g~l~~~~~~~~~~~~~~~-~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW 422 (737)
......+. ..+....++. ...+++.+++.+++.++.+..+..+++++.++.++++|+++||+ .++.|..+..++|
T Consensus 333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~---~~~~p~~~~~~~W 408 (487)
T PLN02676 333 EFFLYAHE-RRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP---NIPEATDILVPRW 408 (487)
T ss_pred eeeeeecc-ccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC---CCCCcceEEeccc
Confidence 22222111 1111111111 11234557888899888899999999999999999999999974 3678899999999
Q ss_pred CCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhh
Q 004684 423 GGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (737)
Q Consensus 423 ~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (737)
..+||+.|+|++++||......+.+++|+ ++|||||++|+..|+||||||+.||++||++|++.++.
T Consensus 409 ~~dp~s~Gsys~~~pG~~~~~~~~L~~P~--gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 409 WSNRFFKGSYSNWPIGVSRYEFDQIRAPV--GRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCCCCCCcccCCCCCCCChhHHHHHhCCC--CceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998877788999998 89999999999888999999999999999999998843
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.4e-46 Score=394.55 Aligned_cols=432 Identities=31% Similarity=0.483 Sum_probs=317.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHH
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~ 123 (737)
.++.+|||||||+|||+||.+|.+.|+ +|+|||+++|+|||++|..+.++ .+|+|++|+++..+|+++.+++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-------~ielGAqwihG~~gNpVY~la~ 91 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-------VIELGAQWIHGEEGNPVYELAK 91 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-------eEeecceeecCCCCChHHHHHH
Confidence 445799999999999999999998876 69999999999999999999887 9999999999999999999999
Q ss_pred HhC-CCeeeec----CCcceEecCCcccCchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHH-HHHHHhccCCC
Q 004684 124 QLG-SLLHKVR----DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALE-TFWRVYWDSGN 197 (737)
Q Consensus 124 ~LG-l~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~-~~~~~~~~~~~ 197 (737)
++| +...... .....+..+|..++......+...+..+.... +. ..-.....|++.++. .+........+
T Consensus 92 ~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~---r~-~~~~~~~~SvG~~ln~~~~~~~~~~e~ 167 (498)
T KOG0685|consen 92 EYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKL---RE-AEIAHDEGSVGEYLNSEFWDELRGPEN 167 (498)
T ss_pred HhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhc---cc-ccccCccccHHHHHHHHHHHHhccccc
Confidence 998 3222111 12223456677666544333322222111111 11 000135567777775 34444322222
Q ss_pred HH-HH----HHHHHHHHhh-hhhchhhhhhHHHHhhccCCCCCCCC--CeeecCCCHHHHHHHHHHcCC-----------
Q 004684 198 AE-AM----NLFNWHLANL-EYANASLLSKLSLAFWDQDDPYDMGG--DHCFLPGGNGRLVQALVENVP----------- 258 (737)
Q Consensus 198 ~~-~~----~~~~~~~~~~-~~~~~~~l~~ls~~~~~~~~~~~~~g--~~~~~~gG~~~Lv~aLa~gl~----------- 258 (737)
+. .+ +.++.+.... .....+.++.+++.-+... .+.+| .....+.|...+.+.|.+.++
T Consensus 168 ~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey--~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~ 245 (498)
T KOG0685|consen 168 PEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEY--TECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKR 245 (498)
T ss_pred cchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccce--eecCchhhheechhHHHHHHHHHhccCCCcchhcCchhh
Confidence 11 11 2222221111 1223344555555433221 12333 456677899999999987542
Q ss_pred cccCceEEEEEecC-CcEEEEE-CCeEEEecEEEEccChhhhhcC-CcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCc
Q 004684 259 ILYEKTVHTIRYGS-DGVQVLA-GSQVFEGDMVLCTVPLGVLKSG-SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYV 335 (737)
Q Consensus 259 I~lnt~V~~I~~~~-~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~-~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~ 335 (737)
++++++|..|...+ +.|.|+. ||+.+.||+||||+++++|+.. .-.|.|+||..+.++|+++.+++++|+++.|.+|
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~p 325 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEP 325 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCC
Confidence 55669999999886 4588888 9999999999999999999863 2348999999999999999999999999999999
Q ss_pred cccCCCCCcceeecCCC---CCc-------ceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcC
Q 004684 336 FWETDLDTFGHLTDDSS---SRG-------EFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE 405 (737)
Q Consensus 336 ~w~~~~~~~g~l~~~~~---~~~-------~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~ 405 (737)
||+.+...+..++.+.. .+. .++.|..-+..+ .+|.+|+.|..+..++.++++++.+.+...|+++++
T Consensus 326 fwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~--~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~ 403 (498)
T KOG0685|consen 326 FWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP--NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLK 403 (498)
T ss_pred CCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch--hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcC
Confidence 99998887877776544 111 123333333222 699999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhccc------CCCcEEEeccccccccCceeeHHHHHHH
Q 004684 406 PKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV------GDGRLFFAGEATIRRYPATMHGAFLSGL 479 (737)
Q Consensus 406 ~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv------~~~~L~fAGd~ts~~~~g~~eGAi~SG~ 479 (737)
. ..+|.|..+.++.|.++||++|+|++..+|+....-..++.|. +.+.|.|||++|+..++.+++||++||+
T Consensus 404 n--~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~ 481 (498)
T KOG0685|consen 404 N--PEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGW 481 (498)
T ss_pred C--CCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhH
Confidence 4 4689999999999999999999999999998765555555443 3468999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 004684 480 RETAKMAHCANARA 493 (737)
Q Consensus 480 ~AA~~Il~~l~~~~ 493 (737)
|+|++++..+....
T Consensus 482 REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 482 READRLLEHYESST 495 (498)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999776554
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=372.09 Aligned_cols=422 Identities=27% Similarity=0.416 Sum_probs=283.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
+++||||||||+|||+||++|.++|++|+|||+++|+|||+.|.+..+. ..|+|++++... .+.+..+++++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~-------~~d~gG~~i~p~-~~~~l~~~k~~ 77 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGE-------YTDLGGQYINPT-HDALLAYAKEF 77 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccce-------eeccCCcccCcc-chhhhhhHHhc
Confidence 4599999999999999999999999999999999999999999998444 999999999874 45667799999
Q ss_pred CCCeeeecCC-cceEecCCcccCch-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCC---HHHHHHHHHHHhccCCCHHH
Q 004684 126 GSLLHKVRDK-CPLYRLDGNSVDPE-IDMKVEADFNRLLDKASRLRQLMGEVAMDVS---LGSALETFWRVYWDSGNAEA 200 (737)
Q Consensus 126 Gl~~~~~~~~-~~~~~~~G~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~s---l~~~l~~~~~~~~~~~~~~~ 200 (737)
|++..++... .....+.+.....+ ........+.....................+ .+.....+..|. ...
T Consensus 78 gv~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W~-----~~~ 152 (450)
T COG1231 78 GVPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWK-----TSS 152 (450)
T ss_pred CCCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhhh-----hcc
Confidence 9987765421 11111111111110 0000000000000000000000000000000 001111111110 000
Q ss_pred HHHHHHH-HHhhhhh-----chhhhh-hHHHHhhc---cCCCCCCCCCeeecCCCHHHHHHHHHHcC--CcccCceEEEE
Q 004684 201 MNLFNWH-LANLEYA-----NASLLS-KLSLAFWD---QDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTI 268 (737)
Q Consensus 201 ~~~~~~~-~~~~~~~-----~~~~l~-~ls~~~~~---~~~~~~~~g~~~~~~gG~~~Lv~aLa~gl--~I~lnt~V~~I 268 (737)
...+..+ ....... .-..+. .+....+. ....++.....+...|||+.|.+++++.+ .|+++.+|.+|
T Consensus 153 ~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI 232 (450)
T COG1231 153 LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRI 232 (450)
T ss_pred ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecCceeeE
Confidence 0000000 0000000 000000 01111111 11222233334555699999999999977 49999999999
Q ss_pred EecCCcEEEEECC-eEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCccee
Q 004684 269 RYGSDGVQVLAGS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHL 347 (737)
Q Consensus 269 ~~~~~~V~V~~~G-~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l 347 (737)
..++++|+|++.. +++.+|+||||+|+.++. .|+|.|.+|+.++++++.++|++.+|+.+.|+++||++.. ..+..
T Consensus 233 ~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~-~l~G~ 309 (450)
T COG1231 233 DQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG-ILGGE 309 (450)
T ss_pred EEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcc-cCCce
Confidence 9999999999955 899999999999999998 5899999999999999999999999999999999999876 33332
Q ss_pred ecCCCCCcceEEEeecccc-CCCcEEEE-EecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceE-EEecCCC
Q 004684 348 TDDSSSRGEFFLFYSYATV-AGGPLLIA-LVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQT-VCTRWGG 424 (737)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~p-~g~~~L~~-~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~-~~~rW~~ 424 (737)
.-... ...+..++.... +|..++.. |..|..+..|..+++++.++.++..|.++||+. ...+.+. ...+|..
T Consensus 310 ~~tD~--~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~---a~~~f~~~~~~~W~~ 384 (450)
T COG1231 310 SLTDL--GLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDE---AADPFDYGASVDWSK 384 (450)
T ss_pred EeecC--CcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChh---hccccccceeeeccc
Confidence 21111 122333333322 44445554 677999999999999999999999999999853 3455555 8889999
Q ss_pred CCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHh
Q 004684 425 DPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 425 ~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
+||+.|+|..+.||+....++.+..|. ++|||||+..++.++||+|||++||.+||.+|...+.
T Consensus 385 dpwt~G~~aa~~~g~~~~~~~~l~~p~--gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 385 DPWTLGGTAAYPPGQRTKLYPTLPAPH--GRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred CCcCCccccccCCcccccccccccCCC--CceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999888999999999999998887 9999999555555899999999999999999998764
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=4.4e-37 Score=348.72 Aligned_cols=408 Identities=20% Similarity=0.241 Sum_probs=277.0
Q ss_pred CcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHH
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~ 123 (737)
+||+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+ .+|.|+|++...+.+ +..+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~-------~~e~G~~~~~~~~~~-~~~l~~ 74 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGY-------LIERGPDSFLERKKS-APDLVK 74 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCE-------EEecCccccccCChH-HHHHHH
Confidence 7999999999999999999999 9999999999999999999987765 899999999987655 777999
Q ss_pred HhCCCeeeec--CCcceEecC-CcccCchhhHHHHHHHHHHHHHHHHHHHHhh-----hhccCCCHHHHHHHHHHHhccC
Q 004684 124 QLGSLLHKVR--DKCPLYRLD-GNSVDPEIDMKVEADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWRVYWDS 195 (737)
Q Consensus 124 ~LGl~~~~~~--~~~~~~~~~-G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~sl~~~l~~~~~~~~~~ 195 (737)
++|++..... ....+++.+ |+.++.+..... .....++....+++..+. ....+.++.+|+... ++.
T Consensus 75 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~---~g~- 149 (462)
T TIGR00562 75 DLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAP-FVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRR---FGD- 149 (462)
T ss_pred HcCCCcccccCCCCceEEEECCCceecCCCChHH-HhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHh---cCH-
Confidence 9998765432 223333444 766544422110 000000111111111111 123457888877521 111
Q ss_pred CCHHHHHHHHHHHHhhhhhchhhhhh----------------HHHHhhccC--------CCC--CCCCCeeecCCCHHHH
Q 004684 196 GNAEAMNLFNWHLANLEYANASLLSK----------------LSLAFWDQD--------DPY--DMGGDHCFLPGGNGRL 249 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~l~~----------------ls~~~~~~~--------~~~--~~~g~~~~~~gG~~~L 249 (737)
.....++.++...........++. +........ ..+ ..+.....+.+|+++|
T Consensus 150 --~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 227 (462)
T TIGR00562 150 --EVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETL 227 (462)
T ss_pred --HHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHH
Confidence 011112222211111111110000 000000000 000 1122267789999999
Q ss_pred HHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcce
Q 004684 250 VQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLL 325 (737)
Q Consensus 250 v~aLa~gl---~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~ 325 (737)
+++|++.+ +|++|++|++|..++++|+|++ +|++++||+||+|+|++.+.. +.|++|....+++.+++|.++
T Consensus 228 ~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~ 303 (462)
T TIGR00562 228 PEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPV 303 (462)
T ss_pred HHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCce
Confidence 99998876 4999999999999999998887 677899999999999999875 567788888999999999999
Q ss_pred eEEEEEcCCccccCCCCCcceeecCCCCCcceEEEee-----ccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHH
Q 004684 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYS-----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQIL 400 (737)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~-----~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L 400 (737)
.+|++.|++++|..+...++++.+.........+.++ ...|++..++++|+.+.....+..++++++++.++++|
T Consensus 304 ~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L 383 (462)
T TIGR00562 304 ANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDL 383 (462)
T ss_pred EEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHH
Confidence 9999999999988766677877664432222233333 33456667888999887777788899999999999999
Q ss_pred HhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCC---cHHHHhcccCCCcEEEeccccccccCceeeHHHHH
Q 004684 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD---DYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLS 477 (737)
Q Consensus 401 ~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~---~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~S 477 (737)
.++++.. ..|....+++|.. +|....+|.... ..+.+..+. ++|++||+|+.. .+|++|+.|
T Consensus 384 ~~~~gi~----~~p~~~~v~rw~~------a~P~~~~g~~~~~~~i~~~l~~~~--~~l~l~G~~~~g---~~i~~~i~s 448 (462)
T TIGR00562 384 KKVLNIN----NEPEMLCVTRWHR------AIPQYHVGHDQRLKEARELLESAY--PGVFLTGNSFEG---VGIPDCIDQ 448 (462)
T ss_pred HHHhCCC----CCCcEEEEeEccc------cCCCCCCChHHHHHHHHHHHHhhC--CCEEEeccccCC---CcHHHHHHH
Confidence 9999742 2478889999965 555555654211 112233333 699999999863 489999999
Q ss_pred HHHHHHHHHHHH
Q 004684 478 GLRETAKMAHCA 489 (737)
Q Consensus 478 G~~AA~~Il~~l 489 (737)
|+++|++|++.+
T Consensus 449 g~~~a~~~~~~~ 460 (462)
T TIGR00562 449 GKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=6.2e-37 Score=341.17 Aligned_cols=416 Identities=31% Similarity=0.438 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecC--CCCCCccceEeccccceecCCCCcHHHHHHHHhCCC--eeee
Q 004684 57 LAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME--GGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL--LHKV 132 (737)
Q Consensus 57 iAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~--g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~--~~~~ 132 (737)
||||+||++|+++|++|+|||+++|+|||++|.+.+ |. .+|+|+++|.+.+.+ +..++.++|+. ....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~-------~~e~G~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 72 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGF-------TFELGAHRFFGMYPN-LLNLIDELGLELSLETF 72 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTE-------EEESSS-EEETTSHH-HHHHHHHHTHHTTEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccce-------eecCCcccccccchh-hHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999998 54 999999999987665 66688888874 2222
Q ss_pred c-CC-cceEecCCcccC--chhhHHHH----------HHHHHHHHHHHHHHHHhhhh---ccCCCHHHHHHHHHHHhcc-
Q 004684 133 R-DK-CPLYRLDGNSVD--PEIDMKVE----------ADFNRLLDKASRLRQLMGEV---AMDVSLGSALETFWRVYWD- 194 (737)
Q Consensus 133 ~-~~-~~~~~~~G~~~~--~~~~~~~~----------~~~~~ll~~~~~~~~~~~~~---~~~~sl~~~l~~~~~~~~~- 194 (737)
. .. ...+...+.... ........ .................... ............+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (450)
T PF01593_consen 73 PFPQIPFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQ 152 (450)
T ss_dssp EESSEEEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 1 11 111111111110 00000000 00000000000000000000 0000000001111111100
Q ss_pred CCCHHH-----HHHHHHHHHhhhhhchhhhhhHHHHhhccC--CCCCCCCCeeecCCCHHHHHHHHHH--cCCcccCceE
Q 004684 195 SGNAEA-----MNLFNWHLANLEYANASLLSKLSLAFWDQD--DPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKTV 265 (737)
Q Consensus 195 ~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~--~~~~~~g~~~~~~gG~~~Lv~aLa~--gl~I~lnt~V 265 (737)
...... ...+......................+... ......+......|++..+...+.+ +.+|++|++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V 232 (450)
T PF01593_consen 153 SFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIRLNTPV 232 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEESSEEE
T ss_pred hhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceeecCCcc
Confidence 000000 111111111111111111111111111100 0011222344556677777666655 5689999999
Q ss_pred EEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCc
Q 004684 266 HTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344 (737)
Q Consensus 266 ~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~ 344 (737)
++|+.++++|.|++ +|++++||+||+|+|+..+.+ +.+.|.+|....++++.+++.+..+|++.|++++|..+...+
T Consensus 233 ~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 310 (450)
T PF01593_consen 233 TRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFF 310 (450)
T ss_dssp EEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTES
T ss_pred eeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeeccccccccccc
Confidence 99999999999988 888999999999999999984 668999999899999999999999999999999999865566
Q ss_pred ceeecCCCCCcceEEEeecccc--CCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecC
Q 004684 345 GHLTDDSSSRGEFFLFYSYATV--AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRW 422 (737)
Q Consensus 345 g~l~~~~~~~~~~~~~~~~~~p--~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW 422 (737)
+.+..+... ....++.....+ ++..+++.|+.++.+..+..++++++++.++++|.++++. ..+++|..+.+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~w 387 (450)
T PF01593_consen 311 GILYSDGFS-PIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPG--ASIPDPIDITVTRW 387 (450)
T ss_dssp EEEEESSTS-SEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTT--GGGGEESEEEEEEC
T ss_pred ceecccCcc-ccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccc--cccccccccccccc
Confidence 777665521 222222222222 3567899999888888899999999999999999999984 24578888899999
Q ss_pred CCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHH
Q 004684 423 GGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (737)
Q Consensus 423 ~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (737)
..+++..++|.+..++.....++.+.+|+. +||||||||+++.+.|+++||+.||++||++||
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 388 SRDPYPRGSYSYFPPGQSSQFRPALRTPID-PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTSTTTSSSCECHCTTHHHHHHHHHHSCBT-TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCcc-eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999998888775446778888873 599999999998777999999999999999986
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=8.5e-36 Score=341.23 Aligned_cols=414 Identities=19% Similarity=0.200 Sum_probs=268.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC-CCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHH
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~ 123 (737)
..++||+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+ .+|.|+|++...+. .+..+++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~-------~~d~G~~~~~~~~~-~~~~l~~ 81 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGF-------IWEEGPNSFQPSDP-ELTSAVD 81 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCe-------EEecCCchhccCcH-HHHHHHH
Confidence 3458999999999999999999999 9999999999999999999988765 99999999986543 3555655
Q ss_pred HhCCCeeeec---CCcceEecCCcccCchhhHHHHHHHHHHHHHHHHHHH---Hh-----hhhccCCCHHHHHHHHHHHh
Q 004684 124 QLGSLLHKVR---DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQ---LM-----GEVAMDVSLGSALETFWRVY 192 (737)
Q Consensus 124 ~LGl~~~~~~---~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~-----~~~~~~~sl~~~l~~~~~~~ 192 (737)
+ |+...... ....+++.+|+....+..... .....++....+++. .. .....+.++.+|+... +
T Consensus 82 ~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~---~ 156 (496)
T PLN02576 82 S-GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPID-LPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRH---L 156 (496)
T ss_pred c-CChhheecCCCCceEEEEECCEEEEcCCChHH-hcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHh---c
Confidence 5 77644321 122345567776654432110 000111111111111 11 1114577888887531 1
Q ss_pred ccCCCHHHHHHHHHHHHhhhhhc--------------------hhhhhhHHHHhhccC--------C---CCCCCCCeee
Q 004684 193 WDSGNAEAMNLFNWHLANLEYAN--------------------ASLLSKLSLAFWDQD--------D---PYDMGGDHCF 241 (737)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~ls~~~~~~~--------~---~~~~~g~~~~ 241 (737)
+. .....++.++........ ++.+........... + ....+...+.
T Consensus 157 g~---~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PLN02576 157 GD---EVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGS 233 (496)
T ss_pred CH---HHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEe
Confidence 11 111112222211111111 111100000000000 0 0001233577
Q ss_pred cCCCHHHHHHHHHHcCC---cccCceEEEEEecCCc-EEEEE---CC-eEEEecEEEEccChhhhhcCCcccCCCCCHHH
Q 004684 242 LPGGNGRLVQALVENVP---ILYEKTVHTIRYGSDG-VQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRK 313 (737)
Q Consensus 242 ~~gG~~~Lv~aLa~gl~---I~lnt~V~~I~~~~~~-V~V~~---~G-~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~ 313 (737)
+++|+++|+++|++.+. |++|++|++|+.++++ |.|+. +| ++++||+||+|+|+..+.. +.+.+++..
T Consensus 234 ~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~----ll~~~~~~~ 309 (496)
T PLN02576 234 FRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE----MLRPKSPAA 309 (496)
T ss_pred ccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH----HhcccCHHH
Confidence 89999999999998774 9999999999998886 66654 44 4799999999999999986 344566778
Q ss_pred HHHHHhcCCcceeEEEEEcCCccccC------CCCCcceeecCCCCCcceE-EEeec----cccCCCcEEEEEecchhhh
Q 004684 314 LDAIKRLGYGLLNKVAMLFPYVFWET------DLDTFGHLTDDSSSRGEFF-LFYSY----ATVAGGPLLIALVAGEAAH 382 (737)
Q Consensus 314 ~~ai~~l~~~~~~kV~l~f~~~~w~~------~~~~~g~l~~~~~~~~~~~-~~~~~----~~p~g~~~L~~~v~g~~a~ 382 (737)
.+++.++.|.++.+|++.|++++|.. +...++.+........... .+.+. ..|++..+++.|+.+..+.
T Consensus 310 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~ 389 (496)
T PLN02576 310 ADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNT 389 (496)
T ss_pred HHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCc
Confidence 88999999999999999999999876 3446666654332211121 22222 2345566788899988888
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccC---CCcEEEe
Q 004684 383 KFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG---DGRLFFA 459 (737)
Q Consensus 383 ~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~---~~~L~fA 459 (737)
.+..++++++++.++++|.++++.. ..+.|....+++|.. ++..+.+|... ..+.+.+.+. .++||+|
T Consensus 390 ~~~~~s~ee~~~~~~~~L~~~~g~~--~~~~p~~~~~~~w~~------a~P~~~~g~~~-~~~~~~~~l~~~~~~~l~~a 460 (496)
T PLN02576 390 GIASASEEELVEAVDRDLRKLLLKP--GAPPPKVVGVRVWPK------AIPQYLLGHLD-VLEAAEKMEKDLGLPGLFLG 460 (496)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEeEcCc------ccCCCCcCHHH-HHHHHHHHHHhcCCCCEEEe
Confidence 8888999999999999999999753 224567777889965 44444444421 1222222211 1599999
Q ss_pred ccccccccCceeeHHHHHHHHHHHHHHHHHh
Q 004684 460 GEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 460 Gd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
|+|+.. .++++|+.||.++|++|+..+.
T Consensus 461 G~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 461 GNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 999974 4999999999999999998764
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.7e-35 Score=335.81 Aligned_cols=407 Identities=15% Similarity=0.159 Sum_probs=262.0
Q ss_pred CcEEEECccHHHHHHHHHHHHC------CCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHH
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGIL 121 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~------G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L 121 (737)
++|+|||||+|||+||++|+++ |++|+|||+++|+|||++|.+..|. .+|+|+|++...+.+ +..|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~-------~~e~G~~~i~~~~~~-~~~l 73 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDF-------IMESGADSIVARNEH-VMPL 73 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCE-------EEecCcHHHhcCCHH-HHHH
Confidence 5799999999999999999986 3799999999999999999987765 999999999877644 6679
Q ss_pred HHHhCCCeeeecC--CcceEecCCcccCchhhH------HHHHHHH-HHH---HHHHHHHHHhh---hhccCCCHHHHHH
Q 004684 122 AKQLGSLLHKVRD--KCPLYRLDGNSVDPEIDM------KVEADFN-RLL---DKASRLRQLMG---EVAMDVSLGSALE 186 (737)
Q Consensus 122 ~~~LGl~~~~~~~--~~~~~~~~G~~~~~~~~~------~~~~~~~-~ll---~~~~~~~~~~~---~~~~~~sl~~~l~ 186 (737)
+++||++...... ...+++.+|...+.+... .....+. .++ ..+..+...+. ...++.|+.+|++
T Consensus 74 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~ 153 (463)
T PRK12416 74 VKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLE 153 (463)
T ss_pred HHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHH
Confidence 9999998664422 233444445433221110 0001110 011 11112222221 1235678888775
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhchhhhhh----------------HHHHhhccCCC--CCCCCCeeecCCCHHH
Q 004684 187 TFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSK----------------LSLAFWDQDDP--YDMGGDHCFLPGGNGR 248 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------ls~~~~~~~~~--~~~~g~~~~~~gG~~~ 248 (737)
.. ++. +....++.+.+..........++. +...+...... ......++++++|+++
T Consensus 154 ~~---~~~---~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 227 (463)
T PRK12416 154 SF---LGK---ELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLST 227 (463)
T ss_pred Hh---cCH---HHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHH
Confidence 31 111 111122222222111111111110 00000000000 0112246788999999
Q ss_pred HHHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcc
Q 004684 249 LVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGL 324 (737)
Q Consensus 249 Lv~aLa~gl---~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~ 324 (737)
|+++|++.+ +|++|++|++|+.++++|.|++ +|+++.||+||+|+|+..+.. +.+.|.++ +.+.++.+.+
T Consensus 228 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~ 301 (463)
T PRK12416 228 IIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSS 301 (463)
T ss_pred HHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCc
Confidence 999999877 4999999999999999998877 778899999999999998874 33445443 4578888999
Q ss_pred eeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeec-----cccCCCcEEEEEec--chhhhhhcCCChHHHHHHHH
Q 004684 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY-----ATVAGGPLLIALVA--GEAAHKFESMPPTDAVTKVL 397 (737)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~-----~~p~g~~~L~~~v~--g~~a~~~~~ls~eel~~~vl 397 (737)
+.+|++.|++++|..+...+|++.+.........+.+.. ..+++..+++.++. +..+..+..++++++++.++
T Consensus 302 ~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~ 381 (463)
T PRK12416 302 LISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVAL 381 (463)
T ss_pred eEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHH
Confidence 999999999887765556788887654322111122221 12333334444554 35667788899999999999
Q ss_pred HHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCC---CcHHHHhcccCCCcEEEeccccccccCceeeHH
Q 004684 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASG---DDYDIMAESVGDGRLFFAGEATIRRYPATMHGA 474 (737)
Q Consensus 398 ~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~---~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGA 474 (737)
++|+++||.. ..|+...+++|.. ++....+|... ...+.+..+. ++|||||+++.. .+|++|
T Consensus 382 ~~L~~~lG~~----~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~--~~l~~aG~~~~g---~~i~~a 446 (463)
T PRK12416 382 YDIEKSLGIK----GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLY--PNIYLAGASYYG---VGIGAC 446 (463)
T ss_pred HHHHHHhCCC----CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhC--CCeEEecccccc---ccHHHH
Confidence 9999999743 4788899999965 22222223210 1123344444 799999999874 479999
Q ss_pred HHHHHHHHHHHHHHH
Q 004684 475 FLSGLRETAKMAHCA 489 (737)
Q Consensus 475 i~SG~~AA~~Il~~l 489 (737)
+.||++||++|+..+
T Consensus 447 i~sg~~aA~~i~~~~ 461 (463)
T PRK12416 447 IGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=6.5e-35 Score=329.70 Aligned_cols=404 Identities=23% Similarity=0.255 Sum_probs=258.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
++|+|||||+|||+||+.|+++| ++|+|||+++++|||++|.+.+|. .+|+|+|++.+.+.+ +..++++|
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~l 72 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGF-------PIELGPESFLARKPS-APALVKEL 72 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCe-------EEecChHHhcCCcHH-HHHHHHHc
Confidence 47999999999999999999988 899999999999999999998776 999999988876655 77799999
Q ss_pred CCCeeeec--CCcceEecCCcccCchhhH------HH-HHHHHHHHHHHHHHHHHhh------hhccCCCHHHHHHHHHH
Q 004684 126 GSLLHKVR--DKCPLYRLDGNSVDPEIDM------KV-EADFNRLLDKASRLRQLMG------EVAMDVSLGSALETFWR 190 (737)
Q Consensus 126 Gl~~~~~~--~~~~~~~~~G~~~~~~~~~------~~-~~~~~~ll~~~~~~~~~~~------~~~~~~sl~~~l~~~~~ 190 (737)
|++..... ....+++.+|+....+... .. ......++.....++.... ...++.++.+++...
T Consensus 73 gl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~-- 150 (451)
T PRK11883 73 GLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRR-- 150 (451)
T ss_pred CCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHh--
Confidence 99754332 2334555566644322110 00 0000111111111111111 123567788877531
Q ss_pred HhccCCCHHH-HHHHHHHHHhhhhhchhhhhhHH----------------HHhhccCCCC--CCCCCeeecCCCHHHHHH
Q 004684 191 VYWDSGNAEA-MNLFNWHLANLEYANASLLSKLS----------------LAFWDQDDPY--DMGGDHCFLPGGNGRLVQ 251 (737)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ls----------------~~~~~~~~~~--~~~g~~~~~~gG~~~Lv~ 251 (737)
+ .+.. ..++.+.+..........++... .......... ..+..++++++|++.|++
T Consensus 151 -~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~ 225 (451)
T PRK11883 151 -F----GDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIE 225 (451)
T ss_pred -c----cHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHH
Confidence 1 1111 12222221111111111111000 0000000000 123346789999999999
Q ss_pred HHHHcCC---cccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeE
Q 004684 252 ALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNK 327 (737)
Q Consensus 252 aLa~gl~---I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~k 327 (737)
+|++.++ |++|++|++|+.++++|.|++ +|++++||+||+|+|+..+.+. . + ++...++++++.+.++.+
T Consensus 226 ~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~--~--~~~~~~~~~~~~~~~~~~ 299 (451)
T PRK11883 226 ALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--F--V--APPAFALFKTIPSTSVAT 299 (451)
T ss_pred HHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--c--c--ChhHHHHHhCCCCCceEE
Confidence 9998774 999999999999988888877 8889999999999999999862 1 1 234567889999999999
Q ss_pred EEEEcCCccccCCCCCcceeecCCCCCcceEEEe-e----ccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHh
Q 004684 328 VAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFY-S----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKG 402 (737)
Q Consensus 328 V~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~-~----~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~ 402 (737)
|++.|+++++.. ...++++...........+.+ + ...|++..++..+++.........++++++++.++++|.+
T Consensus 300 v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 378 (451)
T PRK11883 300 VALAFPESATNL-PDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSK 378 (451)
T ss_pred EEEEeccccCCC-CCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHH
Confidence 999999986322 233455443211111122222 2 2234455455555544434445678899999999999999
Q ss_pred hcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccC-CCcEEEeccccccccCceeeHHHHHHHHH
Q 004684 403 IYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG-DGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (737)
Q Consensus 403 i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~-~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (737)
+++.. ..+....+++|.. +|..+.||.. .....+..++. .++|||||+|+.. +++++|+.||+++
T Consensus 379 ~~g~~----~~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~ 444 (451)
T PRK11883 379 VMGIT----GDPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRA 444 (451)
T ss_pred HhCCC----CCceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHH
Confidence 99742 3567889999975 5555556542 22333333321 1699999999862 5799999999999
Q ss_pred HHHHHH
Q 004684 482 TAKMAH 487 (737)
Q Consensus 482 A~~Il~ 487 (737)
|++|+.
T Consensus 445 a~~i~~ 450 (451)
T PRK11883 445 AARLLA 450 (451)
T ss_pred HHHHHh
Confidence 999975
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=315.42 Aligned_cols=407 Identities=18% Similarity=0.200 Sum_probs=251.1
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL 128 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~ 128 (737)
+|+|||||++||+||++|+++|++|+|||+++++||++.|++.+|+ .+|.|+|++...+. .+..++++||+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~-------~~d~g~~~~~~~~~-~~~~l~~~lg~~ 72 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL-------PIERFYHHIFKSDE-ALLELLDELGLE 72 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCc-------chhhhhhhhccccH-HHHHHHHHcCCC
Confidence 6999999999999999999999999999999999999999988776 89999999977654 577799999986
Q ss_pred eeeec-CCcceEecCCcccCchhhHHHH-----HHHHHHHHHHHHHHHHh-h--hhccCCCHHHHHHHHHHHhccCCCHH
Q 004684 129 LHKVR-DKCPLYRLDGNSVDPEIDMKVE-----ADFNRLLDKASRLRQLM-G--EVAMDVSLGSALETFWRVYWDSGNAE 199 (737)
Q Consensus 129 ~~~~~-~~~~~~~~~G~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~-~--~~~~~~sl~~~l~~~~~~~~~~~~~~ 199 (737)
..... .....++.+|..++........ .....+......+.... . ...++.++.+++... . ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~---~---~~~~ 146 (434)
T PRK07233 73 DKLRWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRW---S---GEGV 146 (434)
T ss_pred CceeeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHh---c---CHHH
Confidence 44322 2222234455443321111000 00000000000000000 0 112456677766532 1 1222
Q ss_pred HHHHHHHHHHhhhhhchhhhhhHHHH-hhccC--CCCC-CCCCeeecCCCHHHHHHHHHH-----cCCcccCceEEEEEe
Q 004684 200 AMNLFNWHLANLEYANASLLSKLSLA-FWDQD--DPYD-MGGDHCFLPGGNGRLVQALVE-----NVPILYEKTVHTIRY 270 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~ls~~-~~~~~--~~~~-~~g~~~~~~gG~~~Lv~aLa~-----gl~I~lnt~V~~I~~ 270 (737)
...++.+.+..........++..... .+... .... .....++++||++.|+++|++ +.+|++|++|++|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~ 226 (434)
T PRK07233 147 YEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI 226 (434)
T ss_pred HHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE
Confidence 23344444333322222222221111 01000 0000 122367889999999999976 456999999999999
Q ss_pred cCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeec
Q 004684 271 GSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTD 349 (737)
Q Consensus 271 ~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~ 349 (737)
+++++.+.. ++++++||+||+|+|+..+.. +.|.++....+.++.+.+.+..++++.|+++++. .+.....
T Consensus 227 ~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ 298 (434)
T PRK07233 227 DGGGVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNIN 298 (434)
T ss_pred cCCceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCC----Cceeeec
Confidence 888876554 788999999999999998875 3477777777889999999999999999987543 1111111
Q ss_pred CCCCCcceEEEee----ccccCCCcEE--EEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCC
Q 004684 350 DSSSRGEFFLFYS----YATVAGGPLL--IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWG 423 (737)
Q Consensus 350 ~~~~~~~~~~~~~----~~~p~g~~~L--~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~ 423 (737)
.+..........+ ...|++..++ .+|+.+.. .+..++++++++.++++|.++++.. ....+....+.+|
T Consensus 299 ~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~--~~~~~~~~~~~r~- 373 (434)
T PRK07233 299 DPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDF--DRDDVRAVRISRA- 373 (434)
T ss_pred CCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCC--ChhheeeEEEEEe-
Confidence 1111000011111 1123445443 33444433 2456789999999999999999732 1223444444455
Q ss_pred CCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHh
Q 004684 424 GDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 424 ~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
+++.+. ..||.. ...+.+.+|+ +|||||||++...+.++|++|+.||++||++|++.++
T Consensus 374 --~~a~~~---~~~g~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 374 --PYAQPI---YEPGYL-DKIPPYDTPI--EGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred --cccccc---ccCchh-hcCCCcccCc--CCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 333332 234422 2344456666 8999999965443456999999999999999998774
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=6.6e-33 Score=313.78 Aligned_cols=405 Identities=21% Similarity=0.263 Sum_probs=245.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeec-CCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
+|+|||||++||+||++|+++|++|+|||+++++||+++|.+. +|. .+|.|+|++.+.+.+ +..++++||+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~lg~ 72 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-MLQLLKELNI 72 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCC-------EEEcCcceeccCCch-HHHHHHHcCC
Confidence 5899999999999999999999999999999999999999853 444 899999999987766 5669999998
Q ss_pred Ceeeec-CCcceEec---CCccc--C-----chhhHHHHHHH--HHHHHHHHHHH------HH-h---h--hhccCCCHH
Q 004684 128 LLHKVR-DKCPLYRL---DGNSV--D-----PEIDMKVEADF--NRLLDKASRLR------QL-M---G--EVAMDVSLG 182 (737)
Q Consensus 128 ~~~~~~-~~~~~~~~---~G~~~--~-----~~~~~~~~~~~--~~ll~~~~~~~------~~-~---~--~~~~~~sl~ 182 (737)
...... .....+.. ++... . .+..... ..+ ...+....+++ .. . . ...++.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (453)
T TIGR02731 73 EDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVA-AILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVT 151 (453)
T ss_pred ccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHH-HHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHH
Confidence 654322 11122221 11111 1 1111100 000 00000111111 00 0 0 113567777
Q ss_pred HHHHHHHHHhccCCCHHHH-HHHHHHHHhhhhhchhhhhhHHHHh-hccCCCCCCCCCeeecCCC-HHHHHHHHHH----
Q 004684 183 SALETFWRVYWDSGNAEAM-NLFNWHLANLEYANASLLSKLSLAF-WDQDDPYDMGGDHCFLPGG-NGRLVQALVE---- 255 (737)
Q Consensus 183 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~~g~~~~~~gG-~~~Lv~aLa~---- 255 (737)
+|++. ...++... .++.+....+.......++...... +........+....+..++ ++.++++|.+
T Consensus 152 ~~l~~------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 225 (453)
T TIGR02731 152 EWLRK------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITS 225 (453)
T ss_pred HHHHH------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHh
Confidence 77653 12333322 2344443333222222222211110 0000000111112223333 3445555543
Q ss_pred -cCCcccCceEEEEEecCCc-EE-EEE-CCe-----EEEecEEEEccChhhhhcCCcccCCC-CC-HHHHHHHHhcCCcc
Q 004684 256 -NVPILYEKTVHTIRYGSDG-VQ-VLA-GSQ-----VFEGDMVLCTVPLGVLKSGSIKFIPE-LP-QRKLDAIKRLGYGL 324 (737)
Q Consensus 256 -gl~I~lnt~V~~I~~~~~~-V~-V~~-~G~-----~i~AD~VI~AvP~~~l~~~~i~~~p~-Lp-~~~~~ai~~l~~~~ 324 (737)
|.+|++|++|++|..++++ +. |++ +++ ++.||.||+|+|++.+.+ +.|. ++ ....+.+.++.+.+
T Consensus 226 ~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~----lL~~~~~~~~~~~~~~~~~~~~ 301 (453)
T TIGR02731 226 RGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKL----LLPQPWKQMPFFQKLNGLEGVP 301 (453)
T ss_pred cCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHh----hCchhhhcCHHHHHhhcCCCCc
Confidence 5689999999999875554 42 444 444 789999999999998775 2332 21 23456677788889
Q ss_pred eeEEEEEcCCccccCCCCCcceeecCCCCCcceEE----EeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHH
Q 004684 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFL----FYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQIL 400 (737)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~----~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L 400 (737)
+.++++.|++++|... +.+............ .+++ .+++..++..++. .+..+..++++++++.++++|
T Consensus 302 ~~~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~ee~~~~v~~~L 374 (453)
T TIGR02731 302 VINVHIWFDRKLTTVD----HLLFSRSPLLSVYADMSETCKEY-ADPDKSMLELVFA--PAADWIGRSDEEIIDATMAEL 374 (453)
T ss_pred EEEEEEEEccccCCCC----ceeeeCCCcceeecchhhhChhh-cCCCCeEEEEEec--ChhhhhcCCHHHHHHHHHHHH
Confidence 9999999999987533 222221111110000 0111 2344455554443 235677899999999999999
Q ss_pred HhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHH
Q 004684 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLR 480 (737)
Q Consensus 401 ~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~ 480 (737)
.++||.. .....+.+...++|..+||+. | ...||. ....+.+++|+ +||||||+|++.+|+|+||||+.||.+
T Consensus 375 ~~~~~~~-~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~--~~l~~AG~~~a~~~~g~~egAi~SG~~ 447 (453)
T TIGR02731 375 AKLFPNH-IKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPI--PNFFLAGDYTKQKYLASMEGAVLSGKL 447 (453)
T ss_pred HHhCCcc-cCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCcc--CCEEEeehhccCcccccHHHHHHHHHH
Confidence 9999742 111246677788999999873 4 355774 35667788887 899999999999899999999999999
Q ss_pred HHHHHH
Q 004684 481 ETAKMA 486 (737)
Q Consensus 481 AA~~Il 486 (737)
||++|+
T Consensus 448 AA~~v~ 453 (453)
T TIGR02731 448 CAQAIV 453 (453)
T ss_pred HHHHhC
Confidence 999873
No 18
>PLN02612 phytoene desaturase
Probab=100.00 E-value=2.7e-32 Score=315.01 Aligned_cols=411 Identities=20% Similarity=0.252 Sum_probs=245.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeec-CCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
..+|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|. .+|.|+|++.+.+.+ +..++++|
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~-------~~D~G~h~~~g~~~~-~~~ll~el 164 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-VQNLFGEL 164 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCC-------EEcCCceEEeCCCch-HHHHHHHh
Confidence 489999999999999999999999999999999999999999875 444 899999999988776 66799999
Q ss_pred CCCeeeec-CCcceE-ec--CCccc--Cch--hhHHHHHHHHH-----HHHHHHHHHH---Hh---------hhhccCCC
Q 004684 126 GSLLHKVR-DKCPLY-RL--DGNSV--DPE--IDMKVEADFNR-----LLDKASRLRQ---LM---------GEVAMDVS 180 (737)
Q Consensus 126 Gl~~~~~~-~~~~~~-~~--~G~~~--~~~--~~~~~~~~~~~-----ll~~~~~~~~---~~---------~~~~~~~s 180 (737)
|+...... .....+ .. .+... ..+ ....+...+.. .+....+++. .. ....++.+
T Consensus 165 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~S 244 (567)
T PLN02612 165 GINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLS 244 (567)
T ss_pred CCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCc
Confidence 99654221 111111 11 11110 111 00000001100 0111111111 00 01124567
Q ss_pred HHHHHHHHHHHhccCCCHHHH-HHHHHHHHhhhhhchhhhhhHHHHh-hccCCCCCCCCCeeecCCCH-HHHHHHHHH--
Q 004684 181 LGSALETFWRVYWDSGNAEAM-NLFNWHLANLEYANASLLSKLSLAF-WDQDDPYDMGGDHCFLPGGN-GRLVQALVE-- 255 (737)
Q Consensus 181 l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~~g~~~~~~gG~-~~Lv~aLa~-- 255 (737)
+.+|++.. ..++... +++.++...+...+...++...... +........+....++.|+. +.|+++|++
T Consensus 245 v~e~l~~~------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l 318 (567)
T PLN02612 245 VKEWMRKQ------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHF 318 (567)
T ss_pred HHHHHHhc------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHH
Confidence 77766531 1222222 2344333333222222221111110 00000001122233444544 456666644
Q ss_pred ---cCCcccCceEEEEEecCCcE--EEEE-CCeEEEecEEEEccChhhhhcCCcccCCC--CCHHHHHHHHhcCCcceeE
Q 004684 256 ---NVPILYEKTVHTIRYGSDGV--QVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPE--LPQRKLDAIKRLGYGLLNK 327 (737)
Q Consensus 256 ---gl~I~lnt~V~~I~~~~~~V--~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~--Lp~~~~~ai~~l~~~~~~k 327 (737)
|.+|++|++|++|+.+++++ .|.+ +|++++||+||+|+|+..+... .|. .+....+.++++.+.++.+
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~L----l~~~~~~~~~~~~l~~l~~~~v~~ 394 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLL----LPDQWKEIPYFKKLDKLVGVPVIN 394 (567)
T ss_pred HhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHh----CcchhcCcHHHHHHHhcCCCCeEE
Confidence 56799999999999876662 3555 7889999999999999988752 232 1234556677888889999
Q ss_pred EEEEcCCccccCCCCCcceeecCCCCCcceEEEeecc------ccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHH
Q 004684 328 VAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYA------TVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (737)
Q Consensus 328 V~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~------~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (737)
|++.|++++|.... ..+....... ..+.+.+ .+++..++.+.+. .+..|.+++++++++.++++|.
T Consensus 395 v~l~~dr~~~~~~~---~~~~~~~~~~---~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~ 466 (567)
T PLN02612 395 VHIWFDRKLKNTYD---HLLFSRSPLL---SVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELA 466 (567)
T ss_pred EEEEECcccCCCCC---ceeecCCCCc---eeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHH
Confidence 99999999885321 1222211111 1111111 1334445554432 5678889999999999999999
Q ss_pred hhcCCCCCCCCC--CceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHH
Q 004684 402 GIYEPKGINVPE--PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGL 479 (737)
Q Consensus 402 ~i~~~~~~~vp~--p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~ 479 (737)
++||..- .++ ........+...|++ .|.. .||.. ..++.+.+|+ +||||||||+..+|+++||||+.||+
T Consensus 467 ~lfp~~~--~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~~-~~rp~~~tPi--~~l~lAGd~t~~~~~~smeGAv~SG~ 538 (567)
T PLN02612 467 KLFPDEI--SADQSKAKILKYHVVKTPRS--VYKT-VPNCE-PCRPLQRSPI--EGFYLAGDYTKQKYLASMEGAVLSGK 538 (567)
T ss_pred HHCCccc--ccccCCceEEEEEEeccCCc--eEEe-CCCCc-ccCccccCcc--CCEEEeecceeCCchhhHHHHHHHHH
Confidence 9998531 111 112222233344432 2322 34332 2345567787 89999999999889999999999999
Q ss_pred HHHHHHHHHHhh
Q 004684 480 RETAKMAHCANA 491 (737)
Q Consensus 480 ~AA~~Il~~l~~ 491 (737)
+||++|++.++.
T Consensus 539 ~AA~~I~~~~~~ 550 (567)
T PLN02612 539 LCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHHhcc
Confidence 999999998854
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-31 Score=294.33 Aligned_cols=402 Identities=20% Similarity=0.223 Sum_probs=275.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
++|+|||||+|||+|||+|+|++ ++|+|||+.+|+||.++|+..+|+ .+|.|+|.|... ...+-.++++|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~-------~~e~G~~~f~~~-~~~~l~li~eL 72 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGF-------LFERGPHHFLAR-KEEILDLIKEL 72 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCE-------EEeechhheecc-hHHHHHHHHHh
Confidence 47999999999999999999999 999999999999999999998887 999999988766 35566799999
Q ss_pred CCCeeeec--CCcceEecCCcccCchhhHHHH--HH-H---HHHHHHHHHHHH-HhhhhccCCCHHHHHHHHHHHhccCC
Q 004684 126 GSLLHKVR--DKCPLYRLDGNSVDPEIDMKVE--AD-F---NRLLDKASRLRQ-LMGEVAMDVSLGSALETFWRVYWDSG 196 (737)
Q Consensus 126 Gl~~~~~~--~~~~~~~~~G~~~~~~~~~~~~--~~-~---~~ll~~~~~~~~-~~~~~~~~~sl~~~l~~~~~~~~~~~ 196 (737)
|++..... ....+++.+|+.++.+...... .. . ..+...+..+.. .......+.++++|+.. ++++..
T Consensus 73 Gled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~---~fG~ev 149 (444)
T COG1232 73 GLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRR---RFGEEV 149 (444)
T ss_pred CcHHhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHH---HHhHHH
Confidence 99877662 3455788888887765433110 00 0 000111111111 11233678888888642 332221
Q ss_pred CHHHHHHHHHHHHhhhhhchhhhhhHHHHhhc-------------------cCCCCC--CCCCeeecCCCHHHHHHHHHH
Q 004684 197 NAEAMNLFNWHLANLEYANASLLSKLSLAFWD-------------------QDDPYD--MGGDHCFLPGGNGRLVQALVE 255 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~-------------------~~~~~~--~~g~~~~~~gG~~~Lv~aLa~ 255 (737)
. ..++.+++......+...+ ++..+. ...+.. ..+...+++||+++|+++|++
T Consensus 150 ~---~~~~~pll~giy~~~~~~L---S~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~ 223 (444)
T COG1232 150 V---ERFIEPLLEGIYAGDADKL---SAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAE 223 (444)
T ss_pred H---HHHHHHHhhchhcCCHHHh---hHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHH
Confidence 1 1233333333332222222 221100 000000 122466789999999999999
Q ss_pred cCC--cccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEc
Q 004684 256 NVP--ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLF 332 (737)
Q Consensus 256 gl~--I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f 332 (737)
.++ |+++++|+.|..+..++.++. +|++++||.||+|+|++.+.. +.++ ....+.+.++.+.++..|.+.+
T Consensus 224 ~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~ 297 (444)
T COG1232 224 KLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGL 297 (444)
T ss_pred HhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEe
Confidence 764 889999999999977777666 888999999999999999986 4444 2346788999999999999998
Q ss_pred CCccccCCCCCcceeecCCCCCcceEE----EeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCC
Q 004684 333 PYVFWETDLDTFGHLTDDSSSRGEFFL----FYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKG 408 (737)
Q Consensus 333 ~~~~w~~~~~~~g~l~~~~~~~~~~~~----~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~ 408 (737)
+++--....+.+|.++.+......-.. ++++..|.|..++.+++.....+....+++||+++.++++|.++++..
T Consensus 298 ~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~- 376 (444)
T COG1232 298 DEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN- 376 (444)
T ss_pred ccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC-
Confidence 875222344567777776654311111 344555667888999888776677777889999999999999999754
Q ss_pred CCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCC--CcEEEeccccccccCceeeHHHHHHHHHHHHHH
Q 004684 409 INVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGD--GRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (737)
Q Consensus 409 ~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~--~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (737)
.+|.+..++||.. ++....+|... ....++..+.. ++|+++|.|..+ -++.+++.+|..||++|+
T Consensus 377 ---~~~~~~~v~r~~~------~~PqY~vG~~~-~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 377 ---GDPVFVEVTRWKY------AMPQYEVGHLD-RLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred ---cchhheeeeeccc------cCCccchhHHH-HHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 3555788888854 55555555432 22233333322 799999999873 278999999999999886
No 20
>PRK07208 hypothetical protein; Provisional
Probab=99.98 E-value=3.6e-30 Score=293.55 Aligned_cols=410 Identities=18% Similarity=0.195 Sum_probs=248.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
+.+||+|||||+|||+||++|+++|++|+|||+++++||+++|....|. .+|+|+|++...+. .+..+++++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~-------~~d~G~h~~~~~~~-~~~~l~~~l 74 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGN-------RFDIGGHRFFSKSP-EVMDLWNEI 74 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCc-------eEccCCceeccCCH-HHHHHHHHh
Confidence 3489999999999999999999999999999999999999999987765 99999999987654 467799999
Q ss_pred CCCee-eecCCcceEecCCcccCchhhH--HHHH-HHHHHHHHHHH-HHHHhhhhccCCCHHHHHHHHHHHhccCCCHHH
Q 004684 126 GSLLH-KVRDKCPLYRLDGNSVDPEIDM--KVEA-DFNRLLDKASR-LRQLMGEVAMDVSLGSALETFWRVYWDSGNAEA 200 (737)
Q Consensus 126 Gl~~~-~~~~~~~~~~~~G~~~~~~~~~--~~~~-~~~~ll~~~~~-~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~ 200 (737)
+.... ........++.+|.....+... .+.. .+...+..... +........++.++++|+... ++. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~---~g~---~~~ 148 (479)
T PRK07208 75 LPDDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINR---FGR---RLY 148 (479)
T ss_pred cCCCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHh---hCH---HHH
Confidence 86322 1223334455577665544321 1100 00011111111 111111123568888887531 111 111
Q ss_pred HHHHHHHHHhhhhhchhhhhhH--------------HHHhhccC---------CCCCCCCCeeecCCCHHHHHHHHHH--
Q 004684 201 MNLFNWHLANLEYANASLLSKL--------------SLAFWDQD---------DPYDMGGDHCFLPGGNGRLVQALVE-- 255 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~l--------------s~~~~~~~---------~~~~~~g~~~~~~gG~~~Lv~aLa~-- 255 (737)
..++.++...........++.. ....+... ........+.++++|++.|+++|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l 228 (479)
T PRK07208 149 STFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKL 228 (479)
T ss_pred HHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHH
Confidence 2222332222211111111100 00011000 0000112356778999999999976
Q ss_pred ---cCCcccCceEEEEEecCCcEE--EEE---CC--eEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcce
Q 004684 256 ---NVPILYEKTVHTIRYGSDGVQ--VLA---GS--QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLL 325 (737)
Q Consensus 256 ---gl~I~lnt~V~~I~~~~~~V~--V~~---~G--~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~ 325 (737)
+++|++|++|++|..+++++. ++. +| .++.||+||+|+|+..+.+ . +.|.+|+...++++.+++.++
T Consensus 229 ~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~--l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 229 EALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-A--LDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-h--cCCCCCHHHHHHHhCCCccee
Confidence 456999999999999887642 222 34 3689999999999998875 2 335678888888999999999
Q ss_pred eEEEEEcCCccccCCCCCcceeecCCCCCcce--EE-EeeccccCCCc-EEE-EEecchhhhhhcCCChHHHHHHHHHHH
Q 004684 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEF--FL-FYSYATVAGGP-LLI-ALVAGEAAHKFESMPPTDAVTKVLQIL 400 (737)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~--~~-~~~~~~p~g~~-~L~-~~v~g~~a~~~~~ls~eel~~~vl~~L 400 (737)
.+|++.|+++.+... .+.++.+.....+.. +. +.+...|++.. .+. .+.... ...+.+++++++++.++++|
T Consensus 306 ~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~-~~~~~~~~deel~~~~~~~L 382 (479)
T PRK07208 306 ITVGLLVKELNLFPD--NWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFE-GDDLWNMSDEDLIALAIQEL 382 (479)
T ss_pred EEEEEEecCCCCCCC--ceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccC-CCccccCCHHHHHHHHHHHH
Confidence 999999998754322 112222111000111 11 11222355553 222 232222 22345789999999999999
Q ss_pred HhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHH---HhcccCCCcEEEeccccccccCceeeHHHHH
Q 004684 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDI---MAESVGDGRLFFAGEATIRRYPATMHGAFLS 477 (737)
Q Consensus 401 ~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~---l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~S 477 (737)
.+++.. .-..+....+.+|.. +|..+.+|.... .+. +.++. +|||+||++....| .+||+|+.|
T Consensus 383 ~~l~~~---~~~~~~~~~v~r~~~------a~P~y~~~~~~~-~~~~~~~~~~~--~~l~laGr~~~~~~-~~~d~a~~s 449 (479)
T PRK07208 383 ARLGLI---RPADVEDGFVVRVPK------AYPVYDGTYERN-VEIIRDLLDHF--PNLHLVGRNGMHRY-NNQDHSMLT 449 (479)
T ss_pred HHcCCC---ChhheeEEEEEEecC------cccCCCchHHHH-HHHHHHHHHhc--CCceeecccccccc-CChhHHHHH
Confidence 997321 123566777778843 444333443211 111 23455 89999999877654 699999999
Q ss_pred HHHHHHHHHHH
Q 004684 478 GLRETAKMAHC 488 (737)
Q Consensus 478 G~~AA~~Il~~ 488 (737)
|.+||++|+..
T Consensus 450 g~~~a~~i~~~ 460 (479)
T PRK07208 450 AMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 21
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.97 E-value=2.2e-29 Score=281.38 Aligned_cols=388 Identities=20% Similarity=0.228 Sum_probs=240.4
Q ss_pred HHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCCeeeecC--Ccce
Q 004684 61 AAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD--KCPL 138 (737)
Q Consensus 61 sAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~--~~~~ 138 (737)
+||++|+++|++|+|||+++++|||+.|.+.+|+ +..+|.|+|++.+.+.+ +..++++||++...... ...+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-----~~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~ 74 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-----GQTIDNGQHVLLGAYTN-LLALLRRIGAEPRLQGPRLPLPF 74 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-----CcceecCCEEEEcccHH-HHHHHHHhCCchhhhcccCCcce
Confidence 5899999999999999999999999999988764 23699999999877655 67799999987653311 1122
Q ss_pred EecCCcc-------cCchhhH--HHH-------HHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhccCCCHHHHH
Q 004684 139 YRLDGNS-------VDPEIDM--KVE-------ADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMN 202 (737)
Q Consensus 139 ~~~~G~~-------~~~~~~~--~~~-------~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ 202 (737)
+..++.. ++.+... .+. ....++......+........++.++.++++.. ..++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~ 148 (419)
T TIGR03467 75 YDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA------GQSERLIE 148 (419)
T ss_pred ecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc------CCCHHHHH
Confidence 2223321 1111110 000 000011111111111111224567887776532 12333333
Q ss_pred -HHHHHHHhhhhhchhhhhhHHHHhh-cc-CCCCCCCCCeeecCCCHHHHHHH-HHH-----cCCcccCceEEEEEecCC
Q 004684 203 -LFNWHLANLEYANASLLSKLSLAFW-DQ-DDPYDMGGDHCFLPGGNGRLVQA-LVE-----NVPILYEKTVHTIRYGSD 273 (737)
Q Consensus 203 -~~~~~~~~~~~~~~~~l~~ls~~~~-~~-~~~~~~~g~~~~~~gG~~~Lv~a-La~-----gl~I~lnt~V~~I~~~~~ 273 (737)
++.+.+..........++....... .. ..........+++++|+++++.. |++ +.+|++|++|++|+.+++
T Consensus 149 ~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~ 228 (419)
T TIGR03467 149 RLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAG 228 (419)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCC
Confidence 3344333322222222222111110 00 00011123467888898876544 554 567999999999999988
Q ss_pred cEEEEE--CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecCC
Q 004684 274 GVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDS 351 (737)
Q Consensus 274 ~V~V~~--~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~ 351 (737)
+|.++. +|+++.||+||+|+|+.++.+ +.|. ..+.+++++++|.++.++++.|++++|... ..++... .
T Consensus 229 ~~~~~~~~~g~~~~~d~vi~a~p~~~~~~----ll~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~-~- 299 (419)
T TIGR03467 229 GIRALVLSGGETLPADAVVLAVPPRHAAS----LLPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVG-G- 299 (419)
T ss_pred cceEEEecCCccccCCEEEEcCCHHHHHH----hCCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecC-C-
Confidence 866543 678899999999999999986 2333 245678899999999999999999998532 2233321 1
Q ss_pred CCCcceEEEeecccc-CCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCC
Q 004684 352 SSRGEFFLFYSYATV-AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLG 430 (737)
Q Consensus 352 ~~~~~~~~~~~~~~p-~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G 430 (737)
...+.++.... +...++..++.+ +..+..++++++++.++++|.++||.. ....+....+.+|...
T Consensus 300 ----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~----- 366 (419)
T TIGR03467 300 ----LAQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV--AGAKPLWARVIKEKRA----- 366 (419)
T ss_pred ----ceeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc--ccCCccceEEEEccCC-----
Confidence 11222233222 223455555543 456778899999999999999999743 1124555566677542
Q ss_pred cCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHH
Q 004684 431 SYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (737)
Q Consensus 431 ~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (737)
.|. ..||.. ..++.+.+|. ++||||||+++.+++++||||+.||.+||++|+
T Consensus 367 ~~~-~~~g~~-~~~~~~~~~~--~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 367 TFA-ATPGLN-RLRPGARTPW--PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccc-cCCccc-ccCCCCCCCc--CCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 222 224432 2344455676 899999999998888999999999999999986
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=2.7e-29 Score=287.10 Aligned_cols=409 Identities=20% Similarity=0.260 Sum_probs=251.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeec-CCCCCCccceEeccccceecCCCCcHHHHHHHHh
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (737)
.++|+|||||++||+||+.|+++|++|+|+|+++++||++.|+.. .|. .+|+|.|++.+.+.+ +..+++++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~-------~~e~G~h~~~~~~~~-~~~ll~~L 146 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGN-------HIEMGLHVFFGCYNN-LFRLMKKV 146 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCc-------EEecceeEecCCcHH-HHHHHHhc
Confidence 469999999999999999999999999999999999999999964 444 899999999988765 66799999
Q ss_pred CCCeeeecC-Ccc-eEecCCccc----CchhhHHHHHHHHHH-----HHHHHHHHHH------------hh--------h
Q 004684 126 GSLLHKVRD-KCP-LYRLDGNSV----DPEIDMKVEADFNRL-----LDKASRLRQL------------MG--------E 174 (737)
Q Consensus 126 Gl~~~~~~~-~~~-~~~~~G~~~----~~~~~~~~~~~~~~l-----l~~~~~~~~~------------~~--------~ 174 (737)
|+....... ... ++..+|... ..+....+ ..+..+ +....+++.. .. .
T Consensus 147 Gl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl-~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~ 225 (569)
T PLN02487 147 GADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPL-HGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIR 225 (569)
T ss_pred CCcccccccccceeEEecCCEEeeeccCCCCCchh-hhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccc
Confidence 997653322 222 223344331 11111110 000111 1111111110 00 0
Q ss_pred hccCCCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhhhhchhhhhhHHHH-hhccCCCCCCCCCeeecCCCHHH-HHH
Q 004684 175 VAMDVSLGSALETFWRVYWDSGNA-EAMNLFNWHLANLEYANASLLSKLSLA-FWDQDDPYDMGGDHCFLPGGNGR-LVQ 251 (737)
Q Consensus 175 ~~~~~sl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~~g~~~~~~gG~~~-Lv~ 251 (737)
..++.++.+|+... ..++ ....++++.+...-....+.++...+. .+.............+++||+.. |++
T Consensus 226 ~~d~~sv~~~l~r~------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~ 299 (569)
T PLN02487 226 DLDDISFSDWFTSH------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSG 299 (569)
T ss_pred cccCCcHHHHHHHh------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHH
Confidence 13456777766431 1223 233455555544443333333322111 11100001112346788999995 888
Q ss_pred HHHH-----cCCcccCceEEEEEecC--Cc---E-EEEE----CCeEEEecEEEEccChhhhhcCCcccCCCCCHH--HH
Q 004684 252 ALVE-----NVPILYEKTVHTIRYGS--DG---V-QVLA----GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQR--KL 314 (737)
Q Consensus 252 aLa~-----gl~I~lnt~V~~I~~~~--~~---V-~V~~----~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~--~~ 314 (737)
.+++ |.+|+++++|++|..++ ++ + .|++ +++++.+|.||+|+|+..+++ +.|..... ..
T Consensus 300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~----Llp~~~~~~~~~ 375 (569)
T PLN02487 300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR----LLPEQWREYEFF 375 (569)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH----hCCchhhccHHH
Confidence 8765 56799999999999973 32 2 2333 345789999999999998886 34544221 25
Q ss_pred HHHHhcCCcceeEEEEEcCCccccCCC--------CCcc--eeecCCCCCcceEEEee--------ccccCCCcEEEEEe
Q 004684 315 DAIKRLGYGLLNKVAMLFPYVFWETDL--------DTFG--HLTDDSSSRGEFFLFYS--------YATVAGGPLLIALV 376 (737)
Q Consensus 315 ~ai~~l~~~~~~kV~l~f~~~~w~~~~--------~~~g--~l~~~~~~~~~~~~~~~--------~~~p~g~~~L~~~v 376 (737)
..+.++.+.+++.|+++|+++.-.... ...| .+. .. ....+..+.+ +.....+.++.+++
T Consensus 376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~-~~-~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vi 453 (569)
T PLN02487 376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLL-YS-ADADFSCFADLALTSPEDYYKEGEGSLIQAVL 453 (569)
T ss_pred hHHhcCCCeeEEEEEEEecccccccccccccccccccccccccc-cc-cCCCcceEeeeecCCHHHHcccCCceEEEEEE
Confidence 677888888999999999975422110 0111 111 00 0111111111 10112235666666
Q ss_pred cchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcE
Q 004684 377 AGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRL 456 (737)
Q Consensus 377 ~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L 456 (737)
.. ++.+..++++++++.++++|.++||... . ..+.+..+.+..+. .| ...||+. ..+|...+|+ +||
T Consensus 454 s~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~-~-~~v~~~~vv~~~~a-----t~-~~~pg~~-~~RP~~~T~~--~nl 520 (569)
T PLN02487 454 TP--GDPYMPLSNDKIVEKVHKQVLELFPSSR-G-LEVTWSSVVKIGQS-----LY-REAPGMD-PFRPDQKTPI--SNF 520 (569)
T ss_pred cC--CccccCCCHHHHHHHHHHHHHHhCcccc-c-CceEEEEEEEccCc-----ee-ccCCCcc-ccCCCCCCCC--CCE
Confidence 53 3567889999999999999999997531 1 13444445555442 22 3345543 2346677787 899
Q ss_pred EEeccccccccCceeeHHHHHHHHHHHHHHHHH
Q 004684 457 FFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (737)
Q Consensus 457 ~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (737)
|+|||||..+|+++||||++||.+||+.|++..
T Consensus 521 ~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 521 FLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred EEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998875
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=2.2e-29 Score=285.35 Aligned_cols=403 Identities=19% Similarity=0.255 Sum_probs=238.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeee-cCCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKK-MEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~-~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
+|+|||||++||+||++|+++|++|+|||+++++||+++|+. ..|+ .+|.|.|++.+.+.+ +..+++++|+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~-------~~d~G~~~~~~~~~~-~~~~~~~lg~ 72 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGN-------HIEMGLHVFFGCYAN-LFRLMKKVGA 72 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCc-------eEeeceEEecCchHH-HHHHHHHcCC
Confidence 589999999999999999999999999999999999999975 3444 899999999987755 6779999998
Q ss_pred CeeeecCC-cceEe-cCCccc--------CchhhHHHHHHH-HHHHHHHHHHH---HH-----hh------------hhc
Q 004684 128 LLHKVRDK-CPLYR-LDGNSV--------DPEIDMKVEADF-NRLLDKASRLR---QL-----MG------------EVA 176 (737)
Q Consensus 128 ~~~~~~~~-~~~~~-~~G~~~--------~~~~~~~~~~~~-~~ll~~~~~~~---~~-----~~------------~~~ 176 (737)
........ ...+. .++... ..+... ....+ ...+....+++ .. .. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
T TIGR02732 73 EDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNG-LKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDL 151 (474)
T ss_pred ccccccccceeEEEcCCCcccccccCCCCCCchhh-hHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhh
Confidence 75432221 12122 223221 111110 00000 00011111111 00 00 012
Q ss_pred cCCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHhhhhhchhhhhhHHH----HhhccCCCCCCCCCeeecCCCHHH---
Q 004684 177 MDVSLGSALETFWRVYWDSGNAE-AMNLFNWHLANLEYANASLLSKLSL----AFWDQDDPYDMGGDHCFLPGGNGR--- 248 (737)
Q Consensus 177 ~~~sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ls~----~~~~~~~~~~~~g~~~~~~gG~~~--- 248 (737)
++.++.+|++.. ..++. ...++.+.+...-......++.... ..+.. ...+....+++||.+.
T Consensus 152 ~~~t~~~~l~~~------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~s~~~~~~g~~~~~l~ 222 (474)
T TIGR02732 152 DKISFAEWFLSH------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA---KTEASKLRMLKGSPDKYLT 222 (474)
T ss_pred ccccHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCcceeeeecCCcchhHH
Confidence 456666665431 22332 3445555555444444433332211 11111 1122244555665444
Q ss_pred --HHHHHHH-cCCcccCceEEEEEecC--Cc---EE-EEE-CC---eEEEecEEEEccChhhhhcCCcccCCCCC--HHH
Q 004684 249 --LVQALVE-NVPILYEKTVHTIRYGS--DG---VQ-VLA-GS---QVFEGDMVLCTVPLGVLKSGSIKFIPELP--QRK 313 (737)
Q Consensus 249 --Lv~aLa~-gl~I~lnt~V~~I~~~~--~~---V~-V~~-~G---~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp--~~~ 313 (737)
+++.|.+ |.+|+++++|++|+.++ ++ ++ |.. +| +++.||+||+|+|++.+.+ +.|+++ ...
T Consensus 223 ~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~----Ll~~~~~~~~~ 298 (474)
T TIGR02732 223 KPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR----LLPQEWRQFEE 298 (474)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh----hCChhhhcCHH
Confidence 5666654 67899999999999864 22 32 223 33 5689999999999999886 334332 124
Q ss_pred HHHHHhcCCcceeEEEEEcCCccccCCCC-------Ccceeec-CCCCCcceEEEee-----c--cccCCC-cEEEEEec
Q 004684 314 LDAIKRLGYGLLNKVAMLFPYVFWETDLD-------TFGHLTD-DSSSRGEFFLFYS-----Y--ATVAGG-PLLIALVA 377 (737)
Q Consensus 314 ~~ai~~l~~~~~~kV~l~f~~~~w~~~~~-------~~g~l~~-~~~~~~~~~~~~~-----~--~~p~g~-~~L~~~v~ 377 (737)
...+..+.+.++..|++.|+++.-..... ....+.. -......+..+.+ . ..+.+. .++.+++.
T Consensus 299 ~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (474)
T TIGR02732 299 FDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLT 378 (474)
T ss_pred HhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEe
Confidence 56788899999999999998744221100 0000000 0000011111111 0 112233 33555554
Q ss_pred chhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEE
Q 004684 378 GEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457 (737)
Q Consensus 378 g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~ 457 (737)
. +..+..++++++++.++++|+++||.. .-..+.+..+.++.+.-| ...||.. ..+|...+|+ +|||
T Consensus 379 ~--~~~~~~~~~~~l~~~~~~~L~~~~p~~--~~~~~~~~~v~~~~~a~~------~~~pg~~-~~~P~~~t~~--~~l~ 445 (474)
T TIGR02732 379 P--GDPWMPESNEEIAKRVDKQVRALFPSS--KNLKLTWSSVVKLAQSLY------REAPGMD-PFRPDQKTPI--SNFF 445 (474)
T ss_pred C--hhhhcCCCHHHHHHHHHHHHHHhCccc--cCCceeEEEEEEecCcee------ccCCCCc-ccCCCCCCCC--CCeE
Confidence 3 346777999999999999999999842 112344444555544222 2335553 2345556676 8999
Q ss_pred EeccccccccCceeeHHHHHHHHHHHHHH
Q 004684 458 FAGEATIRRYPATMHGAFLSGLRETAKMA 486 (737)
Q Consensus 458 fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (737)
+||||+..+|+++||||++||.+||+.|+
T Consensus 446 lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 446 LAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999874
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=4.2e-28 Score=277.37 Aligned_cols=414 Identities=21% Similarity=0.195 Sum_probs=233.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCC-CcHHHHHHHHhC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTL-GNPLGILAKQLG 126 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~-~~~l~~L~~~LG 126 (737)
.||||||||++||+||..|+++|++|+|||+++++||+++|++.+|+ .+|.|+|++.+.. ...+..++++||
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~~~~~~~~~~~~~lg 74 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGF-------TFDVGATQVAGLEPGGIHARIFRELG 74 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCE-------EEeecceEEEecCcCCHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999998776 9999999997642 345777899999
Q ss_pred CCeee---ecCCcceEecCC-cccCchhhHH-----HHHHH---HHHHHHHHHHHHH----hhhh--ccCCCHHHHH---
Q 004684 127 SLLHK---VRDKCPLYRLDG-NSVDPEIDMK-----VEADF---NRLLDKASRLRQL----MGEV--AMDVSLGSAL--- 185 (737)
Q Consensus 127 l~~~~---~~~~~~~~~~~G-~~~~~~~~~~-----~~~~~---~~ll~~~~~~~~~----~~~~--~~~~sl~~~l--- 185 (737)
+.... .+....+++.+| ..+....+.. +...+ .+++..+.+.... +... ....++.++.
T Consensus 75 ~~~~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 75 IPLPEAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred CCCcccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 87432 222334555666 3333221110 11111 0111111111100 0000 0000111110
Q ss_pred ---------------HHHHHHhcc---CCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHH
Q 004684 186 ---------------ETFWRVYWD---SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNG 247 (737)
Q Consensus 186 ---------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~ 247 (737)
..+.++... ..++..+.++.+...............+........ .....+.++++||++
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~GG~~ 232 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQM--AQAPHGLWHLHGSMQ 232 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhc--cccCCCceeecCcHH
Confidence 111122211 234444555543322111111111111111111110 111123567999999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCcEE-EEE-CC-----eEEEecEEEEccChhhhhcCCcccCCCCCHHHHH
Q 004684 248 RLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLA-GS-----QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLD 315 (737)
Q Consensus 248 ~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V~~-~G-----~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ 315 (737)
+|+++|++ |.+|+++++|++|..+++++. |.. ++ +++.||+||+|+|+..+.+ .+ ..+.+|+...+
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll-~~~~~~~~~~~ 310 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LL-GPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hc-CcccCCHHHHH
Confidence 99999977 456999999999999877532 322 43 6899999999999998875 22 23567777778
Q ss_pred HHHhcCCcc-eeEEEEEcCCccccCCC-CCcceeecCCCCCcceEEEe----eccccCCCcEEEEEecchhhhhhcCC--
Q 004684 316 AIKRLGYGL-LNKVAMLFPYVFWETDL-DTFGHLTDDSSSRGEFFLFY----SYATVAGGPLLIALVAGEAAHKFESM-- 387 (737)
Q Consensus 316 ai~~l~~~~-~~kV~l~f~~~~w~~~~-~~~g~l~~~~~~~~~~~~~~----~~~~p~g~~~L~~~v~g~~a~~~~~l-- 387 (737)
.++++++.+ .+++++.+++..-+... ..+....+. .+.+++.. +...|+|...+++.+..+. ..|...
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~-~~~~~~~~ 386 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH---QGSLFVSISQEGDGRAPQGEATLIASSFTDT-NDWSSLDE 386 (492)
T ss_pred HHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC---CceEEEEeCCccccCCCCCceEEEEEcCCCH-HHHcCCCH
Confidence 888888876 56888999873211110 111122111 11222221 1235667777655544322 222211
Q ss_pred -----ChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCC--------CCcCCCCC--CCCCCCcHHHHhcccC
Q 004684 388 -----PPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFS--------LGSYSNVA--VGASGDDYDIMAESVG 452 (737)
Q Consensus 388 -----s~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~--------~G~ys~~~--pG~~~~~~~~l~~pv~ 452 (737)
-.+++.+.+++.|++.+|.. .+- ++..-...|.+ .|++-.+. +.+....++...+|+
T Consensus 387 ~~y~~~k~~~~~~il~~le~~~p~l----~~~---i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i- 458 (492)
T TIGR02733 387 EDYTAKKKQYTQTIIERLGHYFDLL----EEN---WVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV- 458 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc----ccc---EEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC-
Confidence 13557788888998887632 111 11111111211 22211111 222211112224566
Q ss_pred CCcEEEeccccccccCceeeHHHHHHHHHHHHHHH
Q 004684 453 DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAH 487 (737)
Q Consensus 453 ~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~ 487 (737)
+||||||++++++ +++.||+.||+.||++|++
T Consensus 459 -~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 -KGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred -CCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 8999999999763 5899999999999999985
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=7.5e-28 Score=276.00 Aligned_cols=412 Identities=19% Similarity=0.139 Sum_probs=227.0
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCCCe
Q 004684 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLL 129 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~ 129 (737)
|||||||++||+||.+|+++|++|+|||+++++||+++|++..|+ .+|.|++++... +.+..+++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~--~~~~~l~~~lg~~l 71 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF-------RFDTGPTVITMP--EALEELFALAGRDL 71 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCe-------EEecCCeEEccc--cHHHHHHHHcCCCh
Confidence 699999999999999999999999999999999999999999876 999999998743 56778889998542
Q ss_pred ------eeecCCcceEecCCcccCchhhHH-----H-------HHHHHHHHHHHHHHHH-Hhhhh--ccCCCHHHHHHH-
Q 004684 130 ------HKVRDKCPLYRLDGNSVDPEIDMK-----V-------EADFNRLLDKASRLRQ-LMGEV--AMDVSLGSALET- 187 (737)
Q Consensus 130 ------~~~~~~~~~~~~~G~~~~~~~~~~-----~-------~~~~~~ll~~~~~~~~-~~~~~--~~~~sl~~~l~~- 187 (737)
...+....+++.+|..+..+.+.. + ...+..+++....... ..... ..-.++.+++..
T Consensus 72 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T TIGR02734 72 ADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAD 151 (502)
T ss_pred hheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHh
Confidence 122223334455665554432211 1 1122333333332221 10000 001111111110
Q ss_pred ------------HHHHhc-cCCCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHH
Q 004684 188 ------------FWRVYW-DSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALV 254 (737)
Q Consensus 188 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa 254 (737)
+.++.. ...++..+.++......................+. ...+..+++.||++.++++|.
T Consensus 152 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~-----~~~~g~~~~~gG~~~l~~al~ 226 (502)
T TIGR02734 152 LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISAL-----EREWGVWFPRGGTGALVAAMA 226 (502)
T ss_pred hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHH-----HhhceEEEcCCCHHHHHHHHH
Confidence 000010 01222223332211101000000000011111111 112346688999999999997
Q ss_pred H-----cCCcccCceEEEEEecCCc-EEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCC-CHHHHHHHHhcCCc-ce
Q 004684 255 E-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPEL-PQRKLDAIKRLGYG-LL 325 (737)
Q Consensus 255 ~-----gl~I~lnt~V~~I~~~~~~-V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~L-p~~~~~ai~~l~~~-~~ 325 (737)
+ |++|+++++|++|..++++ +.|++ +|++++||.||+|+++..+...++ .+.. +....+.++++.++ +.
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCee
Confidence 6 5679999999999988776 45666 778899999999999876654222 2222 33334555666654 67
Q ss_pred eEEEEEcC---CccccCCCCCcceeecCC-------------CCCcceEE-Eee----ccccCCCcEEEEEecchhh---
Q 004684 326 NKVAMLFP---YVFWETDLDTFGHLTDDS-------------SSRGEFFL-FYS----YATVAGGPLLIALVAGEAA--- 381 (737)
Q Consensus 326 ~kV~l~f~---~~~w~~~~~~~g~l~~~~-------------~~~~~~~~-~~~----~~~p~g~~~L~~~v~g~~a--- 381 (737)
+++++.++ +++ +.......++.++. .....+++ .++ ..+|+|...+.+++..+..
T Consensus 305 ~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~ 383 (502)
T TIGR02734 305 FVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTA 383 (502)
T ss_pred eEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCC
Confidence 88888887 333 21100001111100 00112222 211 2356777766665543321
Q ss_pred -hhhcCCChHHHHHHHHHHHHhh-cCCCCCCCCCCceEEEecCCCCCCC--------CCcCCCCC--CCCCCCcHHH-Hh
Q 004684 382 -HKFESMPPTDAVTKVLQILKGI-YEPKGINVPEPIQTVCTRWGGDPFS--------LGSYSNVA--VGASGDDYDI-MA 448 (737)
Q Consensus 382 -~~~~~ls~eel~~~vl~~L~~i-~~~~~~~vp~p~~~~~~rW~~~p~~--------~G~ys~~~--pG~~~~~~~~-l~ 448 (737)
..|.. ..+++.+.+++.|++. ++. ..+.++......|.+ .|+.-.+. ..+....++. ..
T Consensus 384 ~~~~~~-~k~~~~~~il~~l~~~~~p~-------l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~ 455 (502)
T TIGR02734 384 DVDWSV-EGPRYRDRILAYLEERAIPG-------LRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRD 455 (502)
T ss_pred CCCcHH-HHHHHHHHHHHHHHHhcCCC-------hhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCC
Confidence 12322 2466788899999887 653 222222222222222 22211111 1111112221 23
Q ss_pred cccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHh
Q 004684 449 ESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 449 ~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
+|+ +|||+||++++++ +++.||+.||+.||+.|++.++
T Consensus 456 t~i--~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 456 RKI--DNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCC--CCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhcc
Confidence 566 8999999999763 5899999999999999998653
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=244.01 Aligned_cols=324 Identities=18% Similarity=0.229 Sum_probs=221.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
.+|+||||||+||+||+.|+.+|++|+||||+.-+|||+.|.+..++ .+|+|+.+|...+. .+..+++.++-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g-------~~DhGAqYfk~~~~-~F~~~Ve~~~~ 73 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG-------RFDHGAQYFKPRDE-LFLRAVEALRD 73 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCc-------cccccceeecCCch-HHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999988 89999999976542 23333332211
Q ss_pred CeeeecCCcceEecCCcccCchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 004684 128 LLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWH 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
+-- +. .+.+..
T Consensus 74 ~gl--------------------------------------------------V~------------~W~~~~------- 84 (331)
T COG3380 74 DGL--------------------------------------------------VD------------VWTPAV------- 84 (331)
T ss_pred CCc--------------------------------------------------ee------------eccccc-------
Confidence 100 00 000000
Q ss_pred HHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHHHcCCcccCceEEEEEecCCcEEEEE-C-CeEEE
Q 004684 208 LANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-G-SQVFE 285 (737)
Q Consensus 208 ~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~-~-G~~i~ 285 (737)
..+...+ .+.......|.-.-||.+|.+.|+..++|.++++|++|...++.|++.+ + ++...
T Consensus 85 ---~~~~~~~-------------~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~ 148 (331)
T COG3380 85 ---WTFTGDG-------------SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQ 148 (331)
T ss_pred ---cccccCC-------------CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccc
Confidence 0000000 0000001124556789999999999999999999999999999999998 4 45678
Q ss_pred ecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccc
Q 004684 286 GDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYAT 365 (737)
Q Consensus 286 AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 365 (737)
+|.||+|+|.+.+..+.-.....+|..+++++..+.|.+...+.+.|+.+.-. ...|...++.. .-++-.+.+.
T Consensus 149 ~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~---P~~G~~vdg~~---laWla~d~sK 222 (331)
T COG3380 149 FDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR---PWPGNFVDGHP---LAWLARDASK 222 (331)
T ss_pred cceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC---CCCCcccCCCe---eeeeeccccC
Confidence 99999999999887522111346899999999999999999999999876522 12222222110 1112222222
Q ss_pred c---CCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCC
Q 004684 366 V---AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD 442 (737)
Q Consensus 366 p---~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~ 442 (737)
+ +...+++.....+++....+.++++.+..+......++++ .+++|.....++| .|.. |...-
T Consensus 223 ~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~---~~~~p~~s~~H~W--------rYA~--P~~~~- 288 (331)
T COG3380 223 KGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD---RLPEPDWSDAHRW--------RYAI--PNDAV- 288 (331)
T ss_pred CCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC---CCCcchHHHhhcc--------cccc--ccccc-
Confidence 2 2334667777777777777888888887666666666654 3678888888999 3332 11110
Q ss_pred cHHHHh-cccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHH
Q 004684 443 DYDIMA-ESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (737)
Q Consensus 443 ~~~~l~-~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (737)
..+.+- .+ ..+||+||||++. |-+|||++||..+|.+|++.|
T Consensus 289 ~~~~L~ad~--~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 289 AGPPLDADR--ELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred cCCccccCC--CCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 011121 22 2689999999985 789999999999999998753
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=9e-26 Score=258.01 Aligned_cols=418 Identities=15% Similarity=0.168 Sum_probs=227.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC----CCcHHHHHHH
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT----LGNPLGILAK 123 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~----~~~~l~~L~~ 123 (737)
+||||||||++||+||.+|+++|++|+|||+++.+||++.+++.+|+ .+|.|++++.+. ..+.+..+++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~-------~fd~g~~~~~~~~~~~~~~~~~~~~~ 73 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGY-------RFDVGASMIFGFGDKGTTNLLTRALA 73 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCE-------EEEecchhheecCCcccccHHHHHHH
Confidence 58999999999999999999999999999999999999999998776 999999997653 2345566677
Q ss_pred HhCCCeeeecCC--cceEecCCcccCchhhHH------------HHHHHHHHHHHHHHHHHHhhhh--ccCCCHHHHHH-
Q 004684 124 QLGSLLHKVRDK--CPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQLMGEV--AMDVSLGSALE- 186 (737)
Q Consensus 124 ~LGl~~~~~~~~--~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~~~~~~--~~~~sl~~~l~- 186 (737)
.+|......... ..+...+|..+....+.. -...+.++++........+... ........+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (493)
T TIGR02730 74 AVGRKLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRV 153 (493)
T ss_pred HcCCcccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHH
Confidence 777554332222 223344554333322211 1122333333322222111110 00000000000
Q ss_pred -----------------HHHHHhc-cCCCHHHHHHHHHHHHhhhhhchhhhhh-HHHHhhccCCCCCCCCCeeecCCCHH
Q 004684 187 -----------------TFWRVYW-DSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYDMGGDHCFLPGGNG 247 (737)
Q Consensus 187 -----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ls~~~~~~~~~~~~~g~~~~~~gG~~ 247 (737)
.+.++.. ...++..+.++................. .....+. . ...+..+++.||++
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~-~~~~g~~~~~gG~~ 229 (493)
T TIGR02730 154 FFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---D-RHYGGINYPKGGVG 229 (493)
T ss_pred HhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---c-cccceEecCCChHH
Confidence 0011111 1223333333332221111111011100 0111111 0 12245678999999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCcEE-EEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhc
Q 004684 248 RLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRL 320 (737)
Q Consensus 248 ~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l 320 (737)
.++++|.+ |++|+++++|++|..+++++. |.+ +|++++||.||+|+.+..+...++. ...++......++++
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~ 308 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNY 308 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhc
Confidence 99999976 567999999999998876654 555 7888999999999876554431221 123455444555666
Q ss_pred CCc-ceeEEEEEcCCccccCCCCCcceeec---C-CCCCcceEEEe-----eccccCCCcEEEEEecchhhhhhcCC---
Q 004684 321 GYG-LLNKVAMLFPYVFWETDLDTFGHLTD---D-SSSRGEFFLFY-----SYATVAGGPLLIALVAGEAAHKFESM--- 387 (737)
Q Consensus 321 ~~~-~~~kV~l~f~~~~w~~~~~~~g~l~~---~-~~~~~~~~~~~-----~~~~p~g~~~L~~~v~g~~a~~~~~l--- 387 (737)
.++ +.+++++.++...-+........+.+ . ....+.+++.. +..+|+|..++.+++... ...|.+.
T Consensus 309 ~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~-~~~w~~~~~~ 387 (493)
T TIGR02730 309 VKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSS-MEDWQGLSPK 387 (493)
T ss_pred cCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCC-hhhccCCCcH
Confidence 655 58889999887432111100001100 0 01112222222 122566777776666422 2233222
Q ss_pred ----ChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCC--------CCCCcCCCCCCCCCCCcH--HHHhcccCC
Q 004684 388 ----PPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDP--------FSLGSYSNVAVGASGDDY--DIMAESVGD 453 (737)
Q Consensus 388 ----s~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p--------~~~G~ys~~~pG~~~~~~--~~l~~pv~~ 453 (737)
..+++.+.+++.|.++++.. .+ .++......| ...|+|....-....... +...+|+
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l----~~---~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i-- 458 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGL----DS---AIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI-- 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCh----hh---cEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC--
Confidence 14557788889998887632 11 1111111111 123444211100000011 1234666
Q ss_pred CcEEEeccccccccCceeeHHHHHHHHHHHHHHHHH
Q 004684 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (737)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (737)
+|||+||+++.++ +++.+|+.||+.||++|++.+
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 459 PGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 8999999999763 689999999999999998754
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=2.7e-24 Score=226.74 Aligned_cols=414 Identities=17% Similarity=0.191 Sum_probs=258.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCc--EEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCC--cHHHHH
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFR--VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--NPLGIL 121 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~--V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~--~~l~~L 121 (737)
..++|+|||||++||+|||+|++.+.+ |+|+|+++|+||+++|.+..+ ++.||.|++.+.+... -.+..+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~n------g~ifE~GPrtlrpag~~g~~~l~l 83 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQN------GFIFEEGPRTLRPAGPGGAETLDL 83 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCC------ceeeccCCCccCcCCcchhHHHHH
Confidence 348999999999999999999999876 566999999999999954443 3699999999987654 124568
Q ss_pred HHHhCCCee--eecCC-----cceEecCCcccCchhhHH--HHH----HHHHHHH-HHHH-HHHHhhhhccCCCHHHHHH
Q 004684 122 AKQLGSLLH--KVRDK-----CPLYRLDGNSVDPEIDMK--VEA----DFNRLLD-KASR-LRQLMGEVAMDVSLGSALE 186 (737)
Q Consensus 122 ~~~LGl~~~--~~~~~-----~~~~~~~G~~~~~~~~~~--~~~----~~~~ll~-~~~~-~~~~~~~~~~~~sl~~~l~ 186 (737)
+.+||++.. .++.. ..+.++.|+....+.... ... .+..++. ...+ ++........|+|+++|.+
T Consensus 84 v~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~ 163 (491)
T KOG1276|consen 84 VSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFAR 163 (491)
T ss_pred HHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHH
Confidence 999999643 33322 235566666554442221 000 1111111 1111 1111233466788887764
Q ss_pred HHHHHhccC-----------------CCHHHHHHHHHHHHhhhhhchhhhhhHHHHhhccCC-----------CCCCCCC
Q 004684 187 TFWRVYWDS-----------------GNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDD-----------PYDMGGD 238 (737)
Q Consensus 187 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~-----------~~~~~g~ 238 (737)
. .++.. .+...+......++..|...++.+.....+.+.... .......
T Consensus 164 R---rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~ 240 (491)
T KOG1276|consen 164 R---RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWT 240 (491)
T ss_pred H---hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccc
Confidence 2 22211 111122222233344444444433222222111100 0111223
Q ss_pred eeecCCCHHHHHHHHHHcC-----CcccCceEEEEEecC-CcEEEEE---CC-eEEEecEEEEccChhhhhcCCcccCCC
Q 004684 239 HCFLPGGNGRLVQALVENV-----PILYEKTVHTIRYGS-DGVQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPE 308 (737)
Q Consensus 239 ~~~~~gG~~~Lv~aLa~gl-----~I~lnt~V~~I~~~~-~~V~V~~---~G-~~i~AD~VI~AvP~~~l~~~~i~~~p~ 308 (737)
.+.++||++.|+++|.+.+ .|.++-++..+.... ++|.++. ++ ..+..+++..|+|..++.. ..+.
T Consensus 241 ~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~ 316 (491)
T KOG1276|consen 241 MFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRG 316 (491)
T ss_pred hhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccc
Confidence 4668999999999998866 367777777776554 3476665 33 3456677778999999886 5677
Q ss_pred CCHHHHHHHHhcCCcceeEEEEEcCCccccCCCCCcceeecC--CCCCcceEEEeecc-cc--CCCcEEEEEecchhhhh
Q 004684 309 LPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDD--SSSRGEFFLFYSYA-TV--AGGPLLIALVAGEAAHK 383 (737)
Q Consensus 309 Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~--~~~~~~~~~~~~~~-~p--~g~~~L~~~v~g~~a~~ 383 (737)
+.+....++..+.|.++..|++.|+.+-...+..+||.+++. .+.....-..|+.. .| ++.+.+++++++.....
T Consensus 317 ~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n 396 (491)
T KOG1276|consen 317 LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTN 396 (491)
T ss_pred cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEeccccccc
Confidence 777788899999999999999999886445567899999883 33223333334332 22 23336777777665554
Q ss_pred h--cCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCC---CcHHHHhcccCCCcEEE
Q 004684 384 F--ESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASG---DDYDIMAESVGDGRLFF 458 (737)
Q Consensus 384 ~--~~ls~eel~~~vl~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~---~~~~~l~~pv~~~~L~f 458 (737)
+ ...+++++++.+.++|.++++..+ .|....++-|.+ +...+.+|... .....+.+.-+ .+|++
T Consensus 397 ~~~~~~S~ee~~~~v~~alq~~Lgi~~----~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g-~~l~l 465 (491)
T KOG1276|consen 397 TSLAVPSPEELVNAVTSALQKMLGISN----KPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPG-LGLFL 465 (491)
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhCCCC----Ccccccceehhh------cccceecchHHHHHHHHHHHHhCCC-CceEe
Confidence 3 345889999999999999998652 355555556654 33333344321 12223333322 58999
Q ss_pred eccccccccCceeeHHHHHHHHHHHHHH
Q 004684 459 AGEATIRRYPATMHGAFLSGLRETAKMA 486 (737)
Q Consensus 459 AGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (737)
||.|+.. -.+..+|.||+++|.+++
T Consensus 466 ~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 466 GGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eccccCC---CChhHHHHhhHHHHHhhc
Confidence 9999974 378899999999998874
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.3e-22 Score=230.92 Aligned_cols=236 Identities=28% Similarity=0.312 Sum_probs=142.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LG 126 (737)
.+||||||||++||+||.+|+++|++|+||||++++|||++|++..|+ .||+|++++...+.. .++++++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf-------~fd~G~~~~~~~~~~---~~~~~l~ 72 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF-------RFDTGPSWYLMPDPG---PLFRELG 72 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccce-------EeccCcceeecCchH---HHHHHhc
Confidence 489999999999999999999999999999999999999999999877 999999998876533 4666666
Q ss_pred -CCeeee-----cCCcceEecCCcccCchhhHHH------------HHHHHHHHHHHHHHHHHhhh-h----cc-----C
Q 004684 127 -SLLHKV-----RDKCPLYRLDGNSVDPEIDMKV------------EADFNRLLDKASRLRQLMGE-V----AM-----D 178 (737)
Q Consensus 127 -l~~~~~-----~~~~~~~~~~G~~~~~~~~~~~------------~~~~~~ll~~~~~~~~~~~~-~----~~-----~ 178 (737)
+....+ ......++.+|..+....+... ...+..++....+..+.... . .. .
T Consensus 73 ~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
T COG1233 73 NLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152 (487)
T ss_pred cCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcc
Confidence 443322 2334455566665544322211 11223333322221111111 1 00 1
Q ss_pred CCHHHHHHHH-------HHHh-ccCCCHHHHHHHHHHHHhhhhhchhhhh-hHHHHhhccCCCCCCCCCeeecCCCHHHH
Q 004684 179 VSLGSALETF-------WRVY-WDSGNAEAMNLFNWHLANLEYANASLLS-KLSLAFWDQDDPYDMGGDHCFLPGGNGRL 249 (737)
Q Consensus 179 ~sl~~~l~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ls~~~~~~~~~~~~~g~~~~~~gG~~~L 249 (737)
.....++... ..++ ....++..+..+........ ....... ...... ......++++++||+++|
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~-----~~~~~~G~~~p~GG~~al 226 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLS-----HLGLSGGVFYPRGGMGAL 226 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHH-----HhcccCCeeeeeCCHHHH
Confidence 1111111110 0011 11223333333332211111 1111111 111111 122445688999999999
Q ss_pred HHHHHH-----cCCcccCceEEEEEecCCc-EEEEE-CCeEEEecEEEEccChhhh
Q 004684 250 VQALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 250 v~aLa~-----gl~I~lnt~V~~I~~~~~~-V~V~~-~G~~i~AD~VI~AvP~~~l 298 (737)
+++|++ |++|+++++|++|..++++ +.+++ +|+.+++|.||+++.....
T Consensus 227 ~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 227 VDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALL 282 (487)
T ss_pred HHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhh
Confidence 999987 7789999999999998875 56666 5578999999999987433
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=2.7e-21 Score=211.88 Aligned_cols=417 Identities=19% Similarity=0.135 Sum_probs=217.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|++...+ -..|+|-|+|.++|.|.+ .++++++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg------~~~E~glh~f~~~Y~n~~-~ll~~~~~ 73 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG------NHVEHGLHVFFGCYYNLL-TLLKELPI 73 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC------CeeeeeeEEechhHHHHH-HHhhhCCc
Confidence 47999999999999999999999999999999999999999998654 399999999999998854 58899988
Q ss_pred CeeeecCCc-ceE-e---cCCccc-------CchhhHHHHHHHHHHHHHHHHHH------------HHhhhhccCCCHHH
Q 004684 128 LLHKVRDKC-PLY-R---LDGNSV-------DPEIDMKVEADFNRLLDKASRLR------------QLMGEVAMDVSLGS 183 (737)
Q Consensus 128 ~~~~~~~~~-~~~-~---~~G~~~-------~~~~~~~~~~~~~~ll~~~~~~~------------~~~~~~~~~~sl~~ 183 (737)
+........ ..+ - ..|..- +.+........-...+....+.+ .....-.++.++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d 153 (485)
T COG3349 74 EDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFAD 153 (485)
T ss_pred hheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHH
Confidence 754332111 001 0 011100 00100000000000000000000 00001123444544
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhhhhchhhhhh-HHHHhhccCCCCC-CCCCeeecCCCH-----HHHHHHHH-H
Q 004684 184 ALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYD-MGGDHCFLPGGN-----GRLVQALV-E 255 (737)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ls~~~~~~~~~~~-~~g~~~~~~gG~-----~~Lv~aLa-~ 255 (737)
|+... ..........+......+.+...+..+. .....+....... .......+.++. ..+.+.+. .
T Consensus 154 ~l~~~-----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~ 228 (485)
T COG3349 154 WLKEK-----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPER 228 (485)
T ss_pred HHHHh-----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcccc
Confidence 44321 1112223333433333332222221111 1111100000000 011122223332 22333443 4
Q ss_pred cCCcccCceEEEEEecCCc-----EEEEECCeE---EEecEEEEccChhhhhcCCcccCCC-CC-HHHHHHHHhcCCcce
Q 004684 256 NVPILYEKTVHTIRYGSDG-----VQVLAGSQV---FEGDMVLCTVPLGVLKSGSIKFIPE-LP-QRKLDAIKRLGYGLL 325 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~-----V~V~~~G~~---i~AD~VI~AvP~~~l~~~~i~~~p~-Lp-~~~~~ai~~l~~~~~ 325 (737)
+.+++...+|+.|..+... +.+...+.. ..++.++.+.....+.+ ..|. -+ ....+.+..+...++
T Consensus 229 G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~----~~ps~W~~~~~f~~ly~l~~~p~ 304 (485)
T COG3349 229 GRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKR----DLPSEWPKWSNFDGLYGLRLVPV 304 (485)
T ss_pred CceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhh----cCcccccccccccccccccccce
Confidence 6689999999999887622 222223333 34555666665555554 1221 11 333455667778899
Q ss_pred eEEEEEcCCccccCCC--CCccee---ecCCCCCcceEEE----eeccccCCCcEEEEEecchhhhhhcCCChHHHHHHH
Q 004684 326 NKVAMLFPYVFWETDL--DTFGHL---TDDSSSRGEFFLF----YSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKV 396 (737)
Q Consensus 326 ~kV~l~f~~~~w~~~~--~~~g~l---~~~~~~~~~~~~~----~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~v 396 (737)
.++.++|+...|.... ..++.. .......+.+... .++..|.....+...+. ....|...+++++...+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~ 382 (485)
T COG3349 305 ITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATF 382 (485)
T ss_pred eEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHH
Confidence 9999999864332211 111110 1111111111000 01112221122222221 22345666789999999
Q ss_pred HHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccCceeeHHHH
Q 004684 397 LQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476 (737)
Q Consensus 397 l~~L~~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~ 476 (737)
.+++...+++.. ... ....+.+- .-+.....||+. .+++...+|+ +|+++|||++...+.++||+|..
T Consensus 383 e~~~~~~vP~~~-~a~--~~~~~i~~------~q~~~~~~pgs~-~~rP~~~Tpv--~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 383 EKELYELVPSLA-EAK--LKSSVLVN------QQSLYGLAPGSY-HYRPEQKTPI--PNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred HHHhhhcCCchh-ccc--ccccceec------cccccccCCCcc-ccCCCCCCCc--cchhhccceeecCCcCccchhhh
Confidence 999998876531 111 11111111 112223345544 3466667787 89999999999878899999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004684 477 SGLRETAKMAHCANARAL 494 (737)
Q Consensus 477 SG~~AA~~Il~~l~~~~~ 494 (737)
||++||+.|+..+....+
T Consensus 451 sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 451 SGLLAANAILDNLGHHAP 468 (485)
T ss_pred hHHHHHHHHHHhhhhcCc
Confidence 999999999988866555
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.86 E-value=4.5e-20 Score=189.87 Aligned_cols=272 Identities=20% Similarity=0.179 Sum_probs=174.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecC-CCCcHHHHHHHHh
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG-TLGNPLGILAKQL 125 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~-~~~~~l~~L~~~L 125 (737)
+.+|+|||+|+|||+|||.|++. ++|||||+.+++||++.|...+-. +.+..+|.|.++... .|+| +..|++++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d---~~g~~vDtGfiVyn~~tYpn-l~~Lf~~i 82 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTD---GGGVFVDTGFIVYNERTYPN-LTRLFKTI 82 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeecccc---CCceeecceeEEecCCCcch-HHHHHHHc
Confidence 48999999999999999999887 799999999999999999975433 335799999999987 5655 66799999
Q ss_pred CCCeeeecCCcceEec-CCcccCc---------hhhHHHHHHHHHHHHHHHHHHHH-hh----hhccCCCHHHHHHHHHH
Q 004684 126 GSLLHKVRDKCPLYRL-DGNSVDP---------EIDMKVEADFNRLLDKASRLRQL-MG----EVAMDVSLGSALETFWR 190 (737)
Q Consensus 126 Gl~~~~~~~~~~~~~~-~G~~~~~---------~~~~~~~~~~~~ll~~~~~~~~~-~~----~~~~~~sl~~~l~~~~~ 190 (737)
|++...-.-..++-.. +|..+.- ....-+...|..++..+-++... .. ....+.++++|+..
T Consensus 83 Gv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~--- 159 (447)
T COG2907 83 GVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQ--- 159 (447)
T ss_pred CCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHh---
Confidence 9986543322222111 1111111 00001123344444433333221 11 12467788888753
Q ss_pred HhccCCCHHH-HHHHHHHHHhhhhhchhhhhhHHH----HhhccCCC-C-CCCCCeeecCCCHHHHHHHHHHcCC--ccc
Q 004684 191 VYWDSGNAEA-MNLFNWHLANLEYANASLLSKLSL----AFWDQDDP-Y-DMGGDHCFLPGGNGRLVQALVENVP--ILY 261 (737)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ls~----~~~~~~~~-~-~~~g~~~~~~gG~~~Lv~aLa~gl~--I~l 261 (737)
....... .+++.+..+.++...........+ .|+..... + .....|..+.||...-++.|+.++. |.+
T Consensus 160 ---~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t 236 (447)
T COG2907 160 ---RNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIET 236 (447)
T ss_pred ---cCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccceeec
Confidence 1111111 122233333333333322222222 22222211 1 1223467788999999999999986 999
Q ss_pred CceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCCcceeEEEEEcC
Q 004684 262 EKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFP 333 (737)
Q Consensus 262 nt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~ 333 (737)
+++|.+|..-.++|.++. +|++-++|+||+|+.+..... +.++-+++-.+.+.++.|.....|.....
T Consensus 237 ~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~----mL~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 237 RTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA----LLDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred CCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH----hcCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 999999999999999887 799999999999998877654 34444455567999999987777666543
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.3e-15 Score=160.00 Aligned_cols=241 Identities=17% Similarity=0.181 Sum_probs=138.1
Q ss_pred CCCCCeeecCCCHHHHHHHHHHcC-----CcccCceEEEEEecCCcEE-EEE-CCeEEEecEEEEccChhhhhcCCcccC
Q 004684 234 DMGGDHCFLPGGNGRLVQALVENV-----PILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFI 306 (737)
Q Consensus 234 ~~~g~~~~~~gG~~~Lv~aLa~gl-----~I~lnt~V~~I~~~~~~V~-V~~-~G~~i~AD~VI~AvP~~~l~~~~i~~~ 306 (737)
...+.|.++.|||+++.+++++++ +|.+++.|.+|..+++.+. |.. +|+++++..||+++.+..+.. .+.
T Consensus 251 ~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~---kLl 327 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE---KLL 327 (561)
T ss_pred ccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH---HhC
Confidence 355678999999999999998854 6999999999999987654 444 999999999999887766552 133
Q ss_pred C--CCCHHHHHHHHhcCCc-ceeE----EEEEcCCccccCCCCCccee----ec----------C-----CCCCcceEEE
Q 004684 307 P--ELPQRKLDAIKRLGYG-LLNK----VAMLFPYVFWETDLDTFGHL----TD----------D-----SSSRGEFFLF 360 (737)
Q Consensus 307 p--~Lp~~~~~ai~~l~~~-~~~k----V~l~f~~~~w~~~~~~~g~l----~~----------~-----~~~~~~~~~~ 360 (737)
| .||.+. .++.+.+. +..| .++..+..- ..+....++. .+ + .+.+..+++.
T Consensus 328 p~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~s 404 (561)
T KOG4254|consen 328 PGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELS 404 (561)
T ss_pred CCccCCchh--hhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEe
Confidence 3 477764 55555443 2332 233322110 1111111100 00 0 1112222222
Q ss_pred ee-----ccccCCCcEEEEEecchhhhhhcCCC-------hHHHHHHHHHHHHhhcCCCCCCC-----CCCceEEEecCC
Q 004684 361 YS-----YATVAGGPLLIALVAGEAAHKFESMP-------PTDAVTKVLQILKGIYEPKGINV-----PEPIQTVCTRWG 423 (737)
Q Consensus 361 ~~-----~~~p~g~~~L~~~v~g~~a~~~~~ls-------~eel~~~vl~~L~~i~~~~~~~v-----p~p~~~~~~rW~ 423 (737)
.+ .-.|++++++..|..... ..|++.+ .++..+++++.+.++++.....+ -.|.+. .|.-
T Consensus 405 iPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~--qr~l 481 (561)
T KOG4254|consen 405 IPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTH--QRFL 481 (561)
T ss_pred cccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchh--hHHh
Confidence 21 224678888888886543 4455443 35677889999998886431111 111100 0110
Q ss_pred CCCCCCCcCCCCCCCCC--CCcHHH-----HhcccCCCcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhh
Q 004684 424 GDPFSLGSYSNVAVGAS--GDDYDI-----MAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (737)
Q Consensus 424 ~~p~~~G~ys~~~pG~~--~~~~~~-----l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (737)
. -.+|.|-..+.+.. .-.++. .++|+ ++||+||+.+.++ |++-+|- |..+|...+...+.
T Consensus 482 ~--~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI--~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 482 G--RPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPI--PGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred c--CCCCcccCcccccccccccCCccccccCCCCC--CceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhh
Confidence 0 11344432111110 011222 36788 8999999999874 5665654 88888887766533
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.66 E-value=4.7e-15 Score=162.10 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=132.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhC-
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG- 126 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LG- 126 (737)
+||+|||||++||++|+.|++.|.+|+|+|+++++||++.+....+. ...+.|+|+++..... +..++.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~------~~~~~G~h~f~t~~~~-v~~~~~~~~~ 74 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETI------LFHQYGPHIFHTNNQY-VWDYISPFFE 74 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCc------eEEeecceeEecCcHH-HHHHHHhhcc
Confidence 79999999999999999999999999999999999999998765443 3459999999865543 334444432
Q ss_pred CCeeeecCCcceEecCCcccCchhhHH-HHHHHHHHH-HHH-HHHHHHhhh--hccCCCHHHHHHHHHHHhccCCCHHHH
Q 004684 127 SLLHKVRDKCPLYRLDGNSVDPEIDMK-VEADFNRLL-DKA-SRLRQLMGE--VAMDVSLGSALETFWRVYWDSGNAEAM 201 (737)
Q Consensus 127 l~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~ll-~~~-~~~~~~~~~--~~~~~sl~~~l~~~~~~~~~~~~~~~~ 201 (737)
.. ... .......+|+.++.|.... +...+.... ..+ ..+...... ......+.++.+.....++..+....
T Consensus 75 ~~--~~~-~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~f- 150 (377)
T TIGR00031 75 LN--NYQ-HRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQKV- 150 (377)
T ss_pred cc--cee-EEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 22 111 2245667888888877543 222222110 111 111111110 00113444544333333322211111
Q ss_pred HHHHHHHHhhhhhchhhhhhHHHHhh-------ccCCCCCCCCCeeecCCCHHHHHHHHHHc--CCcccCceEEEEEecC
Q 004684 202 NLFNWHLANLEYANASLLSKLSLAFW-------DQDDPYDMGGDHCFLPGGNGRLVQALVEN--VPILYEKTVHTIRYGS 272 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~ls~~~~-------~~~~~~~~~g~~~~~~gG~~~Lv~aLa~g--l~I~lnt~V~~I~~~~ 272 (737)
+..+..-.+... .+.++..+. ...+.+........|++|..+++++|.+. ++|++|+.+..++..+
T Consensus 151 --f~~Yt~K~Wg~~---p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~ 225 (377)
T TIGR00031 151 --YKPYTVKQWGLP---AEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKD 225 (377)
T ss_pred --ccccCceeeCCC---hHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceeeccc
Confidence 100000001111 111211111 11222333334567899999999999965 8999999888887655
Q ss_pred CcEEEEECCeEEEecEEEEccChhhhh
Q 004684 273 DGVQVLAGSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 273 ~~V~V~~~G~~i~AD~VI~AvP~~~l~ 299 (737)
+++.+. ++.+. +.||.|.|+..+-
T Consensus 226 ~~~~~~--~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 226 SQLHFA--NKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred cceeec--ccccc-CcEEEecCchHHH
Confidence 445442 22333 8899999988764
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.58 E-value=6.9e-14 Score=156.41 Aligned_cols=240 Identities=15% Similarity=0.187 Sum_probs=139.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCC-------------CCCccceEeccccceecC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGG-------------AGNRISASADLGGSVLTG 112 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~-------------~g~~~~~~~D~G~~~~~~ 112 (737)
+.+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|.+.... .|....+.+|+.++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 3599999999999999999999999999999999999999999844320 011234557777776654
Q ss_pred CCCcHHHHHHHHhCCCeee-ecC-CcceEe-cCCcccCchhhH-H----------HHHHHHHHHHHHHHHHHH----hhh
Q 004684 113 TLGNPLGILAKQLGSLLHK-VRD-KCPLYR-LDGNSVDPEIDM-K----------VEADFNRLLDKASRLRQL----MGE 174 (737)
Q Consensus 113 ~~~~~l~~L~~~LGl~~~~-~~~-~~~~~~-~~G~~~~~~~~~-~----------~~~~~~~ll~~~~~~~~~----~~~ 174 (737)
. ..+..++.+.++..+. +.. ...+.+ .+|+....|... . -+..+.+++..+..+... ...
T Consensus 83 ~--G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 83 S--GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred C--ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 3 3455677777765431 111 122333 566654433211 1 122233333333222110 000
Q ss_pred h-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hhchhhhhhHH-H-HhhccCCCCCCCCCeeecCCCHHH
Q 004684 175 V-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANASLLSKLS-L-AFWDQDDPYDMGGDHCFLPGGNGR 248 (737)
Q Consensus 175 ~-~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ls-~-~~~~~~~~~~~~g~~~~~~gG~~~ 248 (737)
. .+..++.++++.+ .+++..++++...+.... +........+. . .+......+.. ....++.+|++.
T Consensus 161 ~~~d~~T~~d~L~~~------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~-~p~~yp~gG~g~ 233 (443)
T PTZ00363 161 LNLKTMTMAQLYKKF------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGK-SPFIYPLYGLGG 233 (443)
T ss_pred cCcccCCHHHHHHHh------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccC-CcceeeCCCHHH
Confidence 0 1235666655432 356666665543333221 11111111111 0 11110011111 235678899999
Q ss_pred HHHHHHH-----cCCcccCceEEEEEecCCc--EEEEE-CCeEEEecEEEEccC
Q 004684 249 LVQALVE-----NVPILYEKTVHTIRYGSDG--VQVLA-GSQVFEGDMVLCTVP 294 (737)
Q Consensus 249 Lv~aLa~-----gl~I~lnt~V~~I~~~~~~--V~V~~-~G~~i~AD~VI~AvP 294 (737)
|+++|++ |..++++++|++|..++++ +.|++ +|++++|+.||+...
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 9999975 5579999999999988654 45666 888999999999544
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.49 E-value=3.3e-14 Score=116.98 Aligned_cols=67 Identities=40% Similarity=0.548 Sum_probs=57.7
Q ss_pred EECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC-CCcHHHHHHHHh
Q 004684 52 VIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQL 125 (737)
Q Consensus 52 IVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~L 125 (737)
|||||++||+||++|+++|++|+|||+++++||++.+.+.++. .+|.|++++... ....+..++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGY-------RFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTE-------EEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCE-------EEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999998765 999999999874 345577777764
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.47 E-value=1.9e-11 Score=138.39 Aligned_cols=72 Identities=29% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHH
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILA 122 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~ 122 (737)
+.+|+|||||+|||+||++|++. |.+|+|||+++.+||++.+...... ++.++.|.+. ...+ ..+..++
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~-----Gy~~~~G~~~-~~~y-~~l~~ll 94 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEK-----GYVARGGREM-ENHF-ECLWDLF 94 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccC-----CEEEECCCCc-cchH-HHHHHHH
Confidence 48999999999999999999996 6899999999999999987653211 2478777664 3333 3466677
Q ss_pred HHh
Q 004684 123 KQL 125 (737)
Q Consensus 123 ~~L 125 (737)
+++
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 665
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=137.32 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=47.9
Q ss_pred eeecC-CCHHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccC
Q 004684 239 HCFLP-GGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVP 294 (737)
Q Consensus 239 ~~~~~-gG~~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP 294 (737)
..|+. ...+.|+++|.. +++|+++++|.+|+.++.+..+.+ +|++++||.+|+|+.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 45555 778889998865 678999999999999998888888 777999999999975
No 38
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=5.2e-11 Score=122.77 Aligned_cols=229 Identities=17% Similarity=0.218 Sum_probs=126.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
+|++|||||++|+..|..|++.|.+|+|+|+++.+||.|++...+.. +-...-.|+|.|+..... +...+.++-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~t----GIlvHkYGpHIFHT~~~~-Vwdyv~~F~e 76 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQT----GILVHKYGPHIFHTDNKR-VWDYVNQFTE 76 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCC----CeEEeeccCceeecCchH-HHHHHhhhhh
Confidence 79999999999999999999999999999999999999999887421 125778899999876654 3334443311
Q ss_pred CeeeecCCcceEecCCcccCchhhHHHHHHHHHHHH---HHHHHHHHhhhhccCCCHHHH---HHHHHHHhccCCCHHHH
Q 004684 128 LLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLD---KASRLRQLMGEVAMDVSLGSA---LETFWRVYWDSGNAEAM 201 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~sl~~~---l~~~~~~~~~~~~~~~~ 201 (737)
-. ......+-..+|..++.|.+.... +.++. .....+..+.....+.+..+. -+......+..+- .
T Consensus 77 ~~--~Y~hrVla~~ng~~~~lP~nl~ti---~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~ais~vg~~LY---~ 148 (374)
T COG0562 77 FN--PYQHRVLALVNGQLYPLPFNLNTI---NQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLY---E 148 (374)
T ss_pred hh--hhccceeEEECCeeeeccccHHHH---HHHhCccCCHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHH---H
Confidence 10 011223455788888887766432 22222 011112222211111111110 0000000000000 0
Q ss_pred HHHHHHH---Hhh--hhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHHH--cCCcccCceEEEEEecCCc
Q 004684 202 NLFNWHL---ANL--EYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTIRYGSDG 274 (737)
Q Consensus 202 ~~~~~~~---~~~--~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa~--gl~I~lnt~V~~I~~~~~~ 274 (737)
.++..+. +.+ +...++.+..+...+ ..++.|....-...|++|...+++.|++ .+.|++||.-..|.....+
T Consensus 149 ~f~kgYT~KQWG~~p~eLpasvi~RvPVr~-~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~~~ 227 (374)
T COG0562 149 AFFKGYTEKQWGLDPKELPASVIKRLPVRL-NFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQLRA 227 (374)
T ss_pred HHhccccHHHhCCChHHCCHHHhcccceEE-cccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhhcc
Confidence 0000000 000 001112222222111 1122222222345688999999999998 8899999988877654321
Q ss_pred EEEEECCeEEEecEEEEccChhhhh
Q 004684 275 VQVLAGSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 275 V~V~~~G~~i~AD~VI~AvP~~~l~ 299 (737)
+.+..||.|-|+..+-
T Consensus 228 ---------~~~~~VvytG~iD~~F 243 (374)
T COG0562 228 ---------IPFAPVVYTGPIDAYF 243 (374)
T ss_pred ---------cCCCceEEecchHhhh
Confidence 4456899999988765
No 39
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.20 E-value=1.7e-09 Score=121.83 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
++||+|||||+||++||+.|+++|++|+|||+.+.+|.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 49999999999999999999999999999999988875
No 40
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=8.7e-09 Score=115.49 Aligned_cols=36 Identities=28% Similarity=0.580 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 399999999999999999999999999999998754
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.13 E-value=3.7e-10 Score=125.34 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=38.2
Q ss_pred eeecC-CCHHHHHHHHHH-----cCCcccCceEEEEEecCCc-EEEEE-CCeEEEecEEEEccC
Q 004684 239 HCFLP-GGNGRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVP 294 (737)
Q Consensus 239 ~~~~~-gG~~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~-V~V~~-~G~~i~AD~VI~AvP 294 (737)
.+||. .-...+++.|.+ +++|+++++|++|+.++++ +.|.+ +++++.||+||+|+.
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 34443 356677777643 7889999999999998888 78888 999999999999975
No 42
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.12 E-value=8.3e-09 Score=109.46 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=34.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+||+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999887653
No 43
>PRK10015 oxidoreductase; Provisional
Probab=99.12 E-value=9.9e-09 Score=115.54 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
+++||||||||+||++||+.|+++|++|+|||+.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 34999999999999999999999999999999988776
No 44
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.09 E-value=2.3e-08 Score=111.12 Aligned_cols=202 Identities=15% Similarity=0.158 Sum_probs=102.5
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCcEEEEE--CCeEEEecEEEEccChhhhhcCCcccCCCCCHHHHHHHHhcCC
Q 004684 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGY 322 (737)
Q Consensus 247 ~~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~--~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~ 322 (737)
..|.+++.+ +++++++++|+.++.+++.+.++. +|++++||.||-|=..+-..+..+. .+.. ....|
T Consensus 108 ~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~~--------~~~~y 178 (387)
T COG0654 108 NALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAEF--------SGRDY 178 (387)
T ss_pred HHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCCc--------cCCCC
Confidence 334444433 268999999999999999888766 6889999999999876544432221 1111 11122
Q ss_pred c-ceeEEEEEcCCccccCCCCCcceeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCChHHHHHHHHHHHH
Q 004684 323 G-LLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (737)
Q Consensus 323 ~-~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~~L~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (737)
. ....+.+..+.+. ....+.+..+ .+.+ .+++.. +....+..+.....+..+..+++++. +..|.
T Consensus 179 ~~~~l~~~~~~~~~~---~~~~~~~~~~----~~~~-~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ 244 (387)
T COG0654 179 GQTALVANVEPEEPH---EGRAGERFTH----AGPF-ALLPLP--DNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQ 244 (387)
T ss_pred CceEEEEEeecCCCC---CCeEEEEecC----CCce-EEEecC--CCceeEEEECChhhHHHHhcCCHHHH----HHHHH
Confidence 2 2233333332111 1111111111 1111 222211 12333444444455556666776665 55666
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCCcCCCCCCCCCCCcHHHHhcccCCCcEEEeccccccccC---ceeeHHHHHH
Q 004684 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYP---ATMHGAFLSG 478 (737)
Q Consensus 402 ~i~~~~~~~vp~p~~~~~~rW~~~p~~~G~ys~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~---g~~eGAi~SG 478 (737)
+.++.. .+ ........|.. .|. ......+++..+++.++||+.+.-+| .+++-|+.-+
T Consensus 245 ~~~~~~---~~-~~~~~~~~~~~------~~p---------l~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da 305 (387)
T COG0654 245 RRLGER---DP-LGRVTLVSSRS------AFP---------LSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDA 305 (387)
T ss_pred HhcCcc---cc-cceEEEccccc------ccc---------ccchhhhheecCcEEEEeeccccCCCccccchhhhhhhH
Confidence 666532 11 11111212211 111 01112223334789999999986443 2666777777
Q ss_pred HHHHHHHHHHHh
Q 004684 479 LRETAKMAHCAN 490 (737)
Q Consensus 479 ~~AA~~Il~~l~ 490 (737)
..-|..|.+...
T Consensus 306 ~~La~~L~~~~~ 317 (387)
T COG0654 306 AALAEALAAAPR 317 (387)
T ss_pred HHHHHHHHHHhh
Confidence 777777766554
No 45
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.09 E-value=1e-08 Score=114.42 Aligned_cols=42 Identities=38% Similarity=0.608 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S 88 (737)
.+||+|||||+||++||+.|+++|++|+|||+++.+|-+..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 499999999999999999999999999999999999965544
No 46
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.08 E-value=1.4e-08 Score=112.34 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHHHH-c-CCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChh
Q 004684 247 GRLVQALVE-N-VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 247 ~~Lv~aLa~-g-l~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~ 296 (737)
..|.+.+.+ + ++|+++++|++|+.+++++.+++ +|+++++|.||.|....
T Consensus 110 ~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 110 QALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 334444433 3 68999999999999888888877 88889999999987654
No 47
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.05 E-value=3.3e-08 Score=110.02 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=36.6
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
+++|+++++|++|+.+++++.|++ +|+++++|.||.|.....
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 678999999999999888888877 778899999999987643
No 48
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.04 E-value=2.1e-09 Score=105.56 Aligned_cols=67 Identities=25% Similarity=0.496 Sum_probs=53.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC-CCcHHHHHHHHhC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (737)
.||+|||||+|||+|||+|+++|++|+|||++..+||-++ .|++.|+.. -..+...+++++|
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w-----------------~GGmlf~~iVv~~~a~~iL~e~g 93 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW-----------------GGGMLFNKIVVREEADEILDEFG 93 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc-----------------ccccccceeeecchHHHHHHHhC
Confidence 7999999999999999999999999999999999998543 234444432 2355677888888
Q ss_pred CCeee
Q 004684 127 SLLHK 131 (737)
Q Consensus 127 l~~~~ 131 (737)
++...
T Consensus 94 I~ye~ 98 (262)
T COG1635 94 IRYEE 98 (262)
T ss_pred Cccee
Confidence 87543
No 49
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.02 E-value=5.5e-09 Score=113.70 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=44.2
Q ss_pred eeecCCC---HHHHHHHHHH-----cCCcccCceEEEEEecCCcEE-EEECCeEEEecEEEEccChhhh
Q 004684 239 HCFLPGG---NGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 239 ~~~~~gG---~~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V~~~G~~i~AD~VI~AvP~~~l 298 (737)
.+.+.+| ...++++|.+ |++|+.+++|++|..++++|. |.++.++++||+||+|+.+...
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWSP 204 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGHH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccce
Confidence 4455566 5667666654 678999999999999999998 8884445999999999976543
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=7.7e-08 Score=106.29 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=36.4
Q ss_pred HcCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChhh
Q 004684 255 ENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 255 ~gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~~ 297 (737)
.+++|+++++|++|..+++++.|.+++.++++|.||+|+....
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence 4788999999999999888888877444899999999998653
No 51
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.01 E-value=1.9e-08 Score=111.74 Aligned_cols=36 Identities=39% Similarity=0.472 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 489999999999999999999999999999998754
No 52
>PRK09126 hypothetical protein; Provisional
Probab=99.01 E-value=3.9e-08 Score=109.32 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHH--HcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 249 LVQALV--ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 249 Lv~aLa--~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
|.+.+. .+++|+++++|++++.+++++.|++ +|+++++|.||.|.....
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 444443 3678999999999998888888877 788999999999988653
No 53
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.98 E-value=6.2e-08 Score=108.32 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 248 RLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 248 ~Lv~aLa~-gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
.|.+.+.+ +++|+++++|++|+.++++|.|++ +|++++||.||.|.......
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence 34444433 577999999999999888888877 77889999999998765433
No 54
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.98 E-value=1.4e-07 Score=104.42 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 247 ~~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
+.|.+.+.+ +++++++++|++|..+++++.|++ +|++++||.||.|....-
T Consensus 109 ~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 109 QALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 344444544 678999999999998888888877 778899999999998653
No 55
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.95 E-value=5.3e-08 Score=108.69 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChh
Q 004684 249 LVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 249 Lv~aLa~-gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~ 296 (737)
|.+.+.+ +++|+++++|++|+.+++++.|+. +|.++++|.||.|....
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 3444333 678999999999999888888887 78889999999998754
No 56
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.95 E-value=9.8e-08 Score=106.16 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=39.6
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 248 ~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
.|.+.+.+ +++++++++|+++..+++++.|+. ++++++||.||.|.....
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 34444432 678999999999998888888877 777999999999987654
No 57
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.93 E-value=2.1e-08 Score=114.00 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=34.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
..++||+|||||++||++||+|+++ |.+|+|||++ ++|+
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~-~~g~ 62 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCGA 62 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC-cccc
Confidence 4458999999999999999999998 9999999995 4543
No 58
>PRK08013 oxidoreductase; Provisional
Probab=98.93 E-value=1.3e-07 Score=105.63 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 248 ~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
.|.+++.+ +++|+++++|++|+.+++++.|+. +|++++||.||-|-..+-..
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 34444443 578999999999999888888877 88899999999998765433
No 59
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.93 E-value=3.4e-09 Score=118.06 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcceeeE
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~ 87 (737)
+||+|||||++|+++|++|++. |++|+|||+...+|+.+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS 44 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQT 44 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccccc
Confidence 8999999999999999999999 999999999888876544
No 60
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=6.5e-09 Score=115.00 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=33.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
+||+|||||++|+++||+|++.|++|+|+|+.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~ 36 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH 36 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 589999999999999999999999999999977654
No 61
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.90 E-value=4.7e-07 Score=100.72 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChh
Q 004684 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 248 ~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~ 296 (737)
.|.+.+.+ +++++++++|++|..+++++.|++ ++.++++|.||.|....
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 34444433 577999999999998888888887 77789999999998754
No 62
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.88 E-value=1.8e-08 Score=111.22 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~S 88 (737)
.+||+|||||+.|+++|++|++.+ ++|+|+|+.+.+|--.++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 489999999999999999999998 999999999999866555
No 63
>PRK06184 hypothetical protein; Provisional
Probab=98.88 E-value=2.1e-07 Score=107.13 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
++||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999998755
No 64
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.86 E-value=6.4e-08 Score=108.41 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=34.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+||+|||||++|+++|++|+++|++|+|||+++.+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~ 38 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAM 38 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 6999999999999999999999999999999887664
No 65
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.86 E-value=9.5e-08 Score=106.88 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 248 ~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
.|.+.+.+ +++|+++++|++|+.+++++.|+. +|++++||.||.|-...-
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 34444443 578999999999999888888887 888999999999988653
No 66
>PRK07190 hypothetical protein; Provisional
Probab=98.86 E-value=2.7e-07 Score=105.57 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=38.0
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
+++|+++++|++|+.+++++.++. +|++++|++||.|.......
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHH
Confidence 688999999999999998888776 77899999999999865543
No 67
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.86 E-value=3.6e-07 Score=101.45 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+||+|||||++||++|+.|++.|++|+|+|+...+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 4899999999999999999999999999999987653
No 68
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.84 E-value=6.3e-07 Score=104.30 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3489999999999999999999999999999998754
No 69
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.83 E-value=5.1e-07 Score=100.32 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 249 LVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 249 Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
|.+++.+ +++|+++++|++++.+++++.|+. +|.++++|.||.|....-..
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 3444433 577999999999999988888888 88899999999998765443
No 70
>PRK06834 hypothetical protein; Provisional
Probab=98.82 E-value=8.6e-07 Score=101.49 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=36.7
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
+++|+++++|++|+.++++|.++. +|+++++|+||.|.....
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 678999999999999999988887 777899999999986543
No 71
>PRK08244 hypothetical protein; Provisional
Probab=98.82 E-value=4.3e-07 Score=104.35 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
++||+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 389999999999999999999999999999998643
No 72
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.81 E-value=1.8e-07 Score=104.25 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 48999999999999999999999999999999874
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=98.79 E-value=6.4e-07 Score=99.56 Aligned_cols=36 Identities=42% Similarity=0.558 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+||+|||||++||+||..|+++|++|+|+|+.+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 489999999999999999999999999999998754
No 74
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.79 E-value=3.8e-08 Score=111.43 Aligned_cols=41 Identities=51% Similarity=0.665 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||+|||+||++|.+.|++|+|||+++.+||...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 48999999999999999999999999999999999998653
No 75
>PRK06185 hypothetical protein; Provisional
Probab=98.76 E-value=5.3e-07 Score=100.81 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.++||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 359999999999999999999999999999999753
No 76
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.75 E-value=2.1e-08 Score=100.70 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=30.5
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccCh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~ 295 (737)
+++|+++++|++|.+++++|.|++ ++++++||+||+|+..
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 456999999999999999999999 6679999999999984
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.75 E-value=5.6e-08 Score=109.02 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=35.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+||+|||||++||++|++|++.|++|+|||+...+|..+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS 40 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETS 40 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhe
Confidence 4899999999999999999999999999999766665443
No 78
>PRK07236 hypothetical protein; Provisional
Probab=98.74 E-value=1.2e-07 Score=105.36 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=35.7
Q ss_pred CCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhh
Q 004684 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 257 l~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l 298 (737)
+.|+++++|++|+.++++|.|+. +|+++++|.||.|-..+-.
T Consensus 113 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 113 ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 45999999999999888888887 8889999999999665433
No 79
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.74 E-value=5.4e-08 Score=110.78 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-C-CcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL-G-FRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~-G-~~V~VLEa~~r~GG 84 (737)
..+||||||||+.|+++||+|++. + .+|+|||+.+.+|.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 459999999999999999999996 3 69999999887663
No 80
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.73 E-value=1.6e-07 Score=98.08 Aligned_cols=39 Identities=41% Similarity=0.600 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+||+|||||++||+||+.|+++|++|+|+|++..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 999999999999999999999999999999999998754
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.72 E-value=1e-07 Score=113.25 Aligned_cols=40 Identities=33% Similarity=0.477 Sum_probs=35.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.+||+|||||++|+++||+|+++|++|+|||+...+|+.+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ga 299 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccC
Confidence 3799999999999999999999999999999987776433
No 82
>PRK11445 putative oxidoreductase; Provisional
Probab=98.71 E-value=4.3e-06 Score=91.77 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
+||+|||||+|||++|+.|++. ++|+|+|+.+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 8999999999999999999999 999999998754
No 83
>PRK06996 hypothetical protein; Provisional
Probab=98.71 E-value=2.5e-06 Score=95.28 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CC---eEEEecEEEEccC
Q 004684 247 GRLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GS---QVFEGDMVLCTVP 294 (737)
Q Consensus 247 ~~Lv~aLa~-gl~I~lnt~V~~I~~~~~~V~V~~-~G---~~i~AD~VI~AvP 294 (737)
..|.+.+.+ +++++++++|++++.++++|.++. ++ ++++||.||-|-.
T Consensus 119 ~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 119 AALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 344444443 567999999999999889998876 33 6899999999966
No 84
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.71 E-value=9.2e-06 Score=89.95 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHHHHcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChh
Q 004684 250 VQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 250 v~aLa~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~ 296 (737)
.+.+.++..+++++.|++|+.+++++.|++ +|++++|+.||-|.++.
T Consensus 94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 333333445889999999999998777777 88899999999998844
No 85
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.70 E-value=6.7e-09 Score=102.85 Aligned_cols=69 Identities=29% Similarity=0.505 Sum_probs=44.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC-CCcHHHHHHHHhC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (737)
+||+|||||+|||+||++|+++|++|+|||++..+||.++. |++.|+.. -+.+-..+++++|
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~-----------------Gg~lf~~iVVq~~a~~iL~elg 80 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG-----------------GGMLFNKIVVQEEADEILDELG 80 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS------------------CTT---EEEETTTHHHHHHHT
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc-----------------cccccchhhhhhhHHHHHHhCC
Confidence 89999999999999999999999999999999999985431 22222211 1123446889999
Q ss_pred CCeeeec
Q 004684 127 SLLHKVR 133 (737)
Q Consensus 127 l~~~~~~ 133 (737)
++.....
T Consensus 81 i~y~~~~ 87 (230)
T PF01946_consen 81 IPYEEYG 87 (230)
T ss_dssp ---EE-S
T ss_pred ceeEEeC
Confidence 9876543
No 86
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.70 E-value=1e-06 Score=97.62 Aligned_cols=43 Identities=2% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChhhhh
Q 004684 257 VPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 257 l~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~~l~ 299 (737)
+.++++++|++|..++++|.|..++.+++||.||.|-...-..
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~v 162 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKV 162 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCchh
Confidence 6688999999999988888888744499999999998765433
No 87
>PRK06126 hypothetical protein; Provisional
Probab=98.69 E-value=7.9e-07 Score=103.48 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 48999999999999999999999999999998763
No 88
>PRK07588 hypothetical protein; Provisional
Probab=98.69 E-value=1.3e-07 Score=105.34 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHHHcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 249 LVQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 249 Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
|.+++..+++|+++++|++|+.++++|.|++ +|+++++|.||.|-...-..
T Consensus 109 L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 109 IYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 3344444578999999999999988898887 88889999999998765443
No 89
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.66 E-value=1.7e-06 Score=97.88 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHH----CCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMR----LGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak----~G~~V~VLEa~~r 81 (737)
+||+|||||++||++|+.|++ .|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999653
No 90
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.66 E-value=2.8e-07 Score=102.85 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=40.7
Q ss_pred CHHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChh
Q 004684 245 GNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 245 G~~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~ 296 (737)
....+.+.|.+ +++|+++++|++|..+++.+.|+++++++.+|.||+|+...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGL 159 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCc
Confidence 34555555543 67899999999998877777777777789999999999853
No 91
>PLN02463 lycopene beta cyclase
Probab=98.65 E-value=8.6e-06 Score=91.92 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=32.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+||+|||||+|||++|+.|++.|++|+|+|++.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 34899999999999999999999999999999965
No 92
>PRK06753 hypothetical protein; Provisional
Probab=98.64 E-value=1.3e-07 Score=104.49 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 257 l~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
.+|+++++|++|+.+++++.|++ +|+++++|.||-|-...-..
T Consensus 111 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 111 DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 35999999999998888898888 88899999999998765433
No 93
>PRK06847 hypothetical protein; Provisional
Probab=98.64 E-value=1.5e-07 Score=103.91 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=36.9
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
+++|+++++|++|+.+++++.|++ +|+++++|.||.|.....
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 678999999999998888888877 888999999999998653
No 94
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.63 E-value=6.4e-07 Score=102.17 Aligned_cols=38 Identities=45% Similarity=0.561 Sum_probs=35.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC--cce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR--AGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r--~GG 84 (737)
++||+|||||++||+||+.|+++|.+|+|+|+... .||
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 48999999999999999999999999999999874 566
No 95
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.63 E-value=7.2e-07 Score=102.65 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.++||||||||++||+||+.++++|.+|+|||+...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46899999999999999999999999999999999998843
No 96
>PRK07538 hypothetical protein; Provisional
Probab=98.62 E-value=3e-06 Score=95.13 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999998654
No 97
>PRK05868 hypothetical protein; Validated
Probab=98.59 E-value=4.4e-07 Score=100.37 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhhc
Q 004684 254 VENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (737)
Q Consensus 254 a~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~~ 300 (737)
..+++++++++|++|+.++++|.|+. +|++++||.||-|-..+-..+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 34678999999999998888898887 888999999999987654443
No 98
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.59 E-value=4.2e-07 Score=103.86 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~ 87 (737)
.+||+|||||+.|++.||+|++. |.+|+|||+.+.+|+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 48999999999999999999985 789999999888776543
No 99
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.59 E-value=1e-07 Score=104.91 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
+||+|||||++|+++|++|++.|++|+|||+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999764
No 100
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.59 E-value=6.3e-07 Score=101.86 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
..+||+||||||+|+++|+.|++. |.+|+|||+.+.+|-
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI 45 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence 347999999999999999999998 899999999778874
No 101
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.57 E-value=1.1e-06 Score=99.34 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=35.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEccCCCcceee
Q 004684 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRAGGRV 86 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r~GGr~ 86 (737)
||+|||||+|||+||+.++++| .+|+||||.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 7999999999999999999999 9999999999988843
No 102
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.57 E-value=6.7e-07 Score=102.02 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCccee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr 85 (737)
+||+||||||+|+++|++|++. |.+|+|||+.+.+|..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~ 40 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAE 40 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhh
Confidence 5999999999999999999997 9999999998877743
No 103
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.55 E-value=1.2e-06 Score=98.11 Aligned_cols=38 Identities=39% Similarity=0.569 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~-G~-~V~VLEa~~r~GG 84 (737)
..+||+|||||++|+++||+|++. |. +|+|||++. +|+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 459999999999999999999995 95 899999975 543
No 104
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.54 E-value=6.6e-07 Score=100.43 Aligned_cols=36 Identities=50% Similarity=0.714 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
||+|||+|+|||+||+.++++|.+|+|+||....||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999998
No 105
>PLN02661 Putative thiazole synthesis
Probab=98.54 E-value=1.1e-06 Score=94.78 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=37.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~GGr~~ 87 (737)
++||+|||||++||+||++|++. |++|+|+|++..+||.++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 47999999999999999999986 899999999999988443
No 106
>PRK07121 hypothetical protein; Validated
Probab=98.53 E-value=2.4e-06 Score=98.06 Aligned_cols=41 Identities=41% Similarity=0.538 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
..+||+|||||+|||+||+.++++|.+|+||||....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46999999999999999999999999999999999888843
No 107
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.52 E-value=2.1e-06 Score=99.72 Aligned_cols=41 Identities=34% Similarity=0.610 Sum_probs=37.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
..++||||||+| +||+||..+++.|.+|+|+||.+.+||.+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 346999999999 99999999999999999999999999854
No 108
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.52 E-value=6e-06 Score=97.41 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHH-CCCcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak-~G~~V~VLEa~~ 80 (737)
+++||+|||||++||++|..|++ .|++|+|||+.+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 45899999999999999999999 599999999975
No 109
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.52 E-value=8.6e-07 Score=98.73 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhh
Q 004684 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 247 ~~Lv~aLa~--gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l 298 (737)
+.|.+.+.+ +++++++++|+++..+++++.++. +|++++||.||.|....-.
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 344444433 367999999999998888888877 7888999999999876543
No 110
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.51 E-value=8e-07 Score=99.76 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 247 GRLVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 247 ~~Lv~aLa~gl---~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
..|.+.|.+.+ .++++++|++|+.++++|.|+. +|.++++|.||.|-......
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHH
Confidence 34666665554 4899999999999888898887 88899999999998766443
No 111
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.51 E-value=1.5e-06 Score=100.04 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=35.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+.+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 349999999999999999999999999999999876555
No 112
>PLN02697 lycopene epsilon cyclase
Probab=98.51 E-value=3.4e-05 Score=88.68 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
...+||+|||||+|||++|+.|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 44699999999999999999999999999999974
No 113
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.50 E-value=2.8e-06 Score=94.14 Aligned_cols=37 Identities=46% Similarity=0.696 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
++||+|||||++||++||+|++.|.+|+|+|+..-.+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 4899999999999999999999999999999965443
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.48 E-value=5.5e-07 Score=95.88 Aligned_cols=38 Identities=39% Similarity=0.688 Sum_probs=34.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+||+|||||++||+||..|++.|++|+|+|+.+ +||++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 689999999999999999999999999999876 77654
No 115
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.45 E-value=1.7e-06 Score=100.55 Aligned_cols=38 Identities=37% Similarity=0.474 Sum_probs=35.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.++||+|||||++||++|..|++.|++|+|||+...++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45999999999999999999999999999999987654
No 116
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.44 E-value=5.2e-06 Score=97.08 Aligned_cols=41 Identities=44% Similarity=0.590 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
++||+|||||++||+||+.++++|.+|+|+||....||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 48999999999999999999999999999999999988653
No 117
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.44 E-value=2.9e-05 Score=87.86 Aligned_cols=39 Identities=33% Similarity=0.604 Sum_probs=36.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+.+||+||||||+|+.+|+.++.+|++|+|+|++|-..|
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 459999999999999999999999999999999998777
No 118
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.41 E-value=1.4e-06 Score=101.23 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+||+|||||+.|+++|+.|+++|++|+|+|+++..+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~ 42 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT 42 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 4899999999999999999999999999999976433
No 119
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.41 E-value=6.6e-06 Score=91.64 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=126.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCC-------C-------CCCccceEeccccceec
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG-------G-------AGNRISASADLGGSVLT 111 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g-------~-------~g~~~~~~~D~G~~~~~ 111 (737)
+.+||||+|-|+.-...|..|++.|.+|+.+|+++.-||...|..... . .+....+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 359999999999999999999999999999999999999999876431 0 02244678888888776
Q ss_pred CCCCcHHHHHHHHhCCCee-eec-CCcceEecCCcccCchhh-----------HHHHHHHHHHHHHHHHHHHHhhh----
Q 004684 112 GTLGNPLGILAKQLGSLLH-KVR-DKCPLYRLDGNSVDPEID-----------MKVEADFNRLLDKASRLRQLMGE---- 174 (737)
Q Consensus 112 ~~~~~~l~~L~~~LGl~~~-~~~-~~~~~~~~~G~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~~---- 174 (737)
.. ..+-.++-+-++.-+ .+. -...+.+.+|+....|.. ..-++.+.+++..+..+...-..
T Consensus 83 a~--g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 83 AR--GPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp TT--SHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred cc--CHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 53 345556666665432 111 122344456655433321 12234444555444333211100
Q ss_pred h-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hhch---hhhhhHHHHhhccCCCCCCCCCeeecCCCHH
Q 004684 175 V-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANA---SLLSKLSLAFWDQDDPYDMGGDHCFLPGGNG 247 (737)
Q Consensus 175 ~-~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~ 247 (737)
. ....++.++++. ..+++...+++...++... +... ..+..+. .+..-...|.. ..+.++.-|.+
T Consensus 161 ~~~~~~~~~e~~~~------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~-~yl~SlgryG~-sPfLyP~YG~G 232 (438)
T PF00996_consen 161 LDPEKKTFQELLKK------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIK-LYLSSLGRYGK-SPFLYPLYGLG 232 (438)
T ss_dssp G-TTTSBHHHHHHH------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHH-HHHHHHCCCSS-SSEEEETT-TT
T ss_pred cccccccHHHHHHh------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHH-HHHHHHhccCC-CCEEEEccCCc
Confidence 0 123444444432 2355555555432221111 1010 1111111 12111122222 25788888999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCc-EE-EEECCeEEEecEEEEc
Q 004684 248 RLVQALVE-----NVPILYEKTVHTIRYGSDG-VQ-VLAGSQVFEGDMVLCT 292 (737)
Q Consensus 248 ~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~-V~-V~~~G~~i~AD~VI~A 292 (737)
.|++++++ |....+|++|.+|..++++ +. |..+|++++|++||+.
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 99999987 5568999999999996554 33 4449999999999964
No 120
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.41 E-value=1.6e-06 Score=96.84 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=32.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999998654
No 121
>PRK09897 hypothetical protein; Provisional
Probab=98.39 E-value=3.6e-06 Score=96.55 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=36.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcc-eeeEee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG-GRVYTK 89 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~G-Gr~~S~ 89 (737)
++|+|||||.+|+++|..|.+.+ .+|+|||++..+| |.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 68999999999999999999865 4899999999998 655543
No 122
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.39 E-value=1.7e-06 Score=90.33 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred CeeecCCCHHHHHHHHHH-cCCcccCceEEEEEec---CCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 238 DHCFLPGGNGRLVQALVE-NVPILYEKTVHTIRYG---SDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 238 ~~~~~~gG~~~Lv~aLa~-gl~I~lnt~V~~I~~~---~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
++.....-+..+.+.+.+ |+.++-+..|+.+... +..|.|.| +|..+.|+.+|+|+.+...+
T Consensus 148 Gvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 148 GVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred cEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 344444445556555544 6679999999999853 34577777 88889999999999998766
No 123
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=8e-06 Score=96.39 Aligned_cols=53 Identities=32% Similarity=0.432 Sum_probs=41.9
Q ss_pred CCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 30 GVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 30 g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
|..|.++...+... ..+||+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 20 ~~~~~~~~~~~~~~--~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 20 RYKFHLKLVNPANK--RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred hccccccccCCccc--cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 44566654444332 348999999999999999999999999999999877753
No 124
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=7.9e-06 Score=95.11 Aligned_cols=40 Identities=45% Similarity=0.707 Sum_probs=37.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC--Ccceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~--r~GGr~ 86 (737)
++||+|||+|.|||+||..++++|.+|+|||+.+ .+||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 4899999999999999999999999999999999 788854
No 125
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.33 E-value=3.7e-06 Score=98.24 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCC---cccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhhhh
Q 004684 247 GRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (737)
Q Consensus 247 ~~Lv~aLa~gl~---I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~l~ 299 (737)
..|.+.|.+.+. ++++++|++|+.++++|+|++ +|+++++|.||.|-...-..
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 456666666552 788999999999999999887 88889999999998765433
No 126
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.31 E-value=1.7e-05 Score=92.87 Aligned_cols=43 Identities=40% Similarity=0.495 Sum_probs=39.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+.++||+|||+|.+|++||+.++++|++|+|||+.+.+||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3469999999999999999999999999999999998888653
No 127
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=4.8e-06 Score=96.18 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=36.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
...+||+|||||++||+||.+|++.|++|+|+|. ++||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 4469999999999999999999999999999976 4888653
No 128
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=1.4e-05 Score=93.58 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=36.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.++||+|||+|++||+||+.++++|.+|+|||+.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 358999999999999999999999999999999998887
No 129
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.28 E-value=6.8e-06 Score=79.37 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCc-ccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccCh
Q 004684 247 GRLVQALVENVPI-LYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 247 ~~Lv~aLa~gl~I-~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~ 295 (737)
+.+.+.+..+++| +...+|++|...++++.|++ +|..+.||+||+|+..
T Consensus 105 ~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 3344444445543 35779999999999988877 8899999999999863
No 130
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.27 E-value=7.8e-07 Score=93.10 Aligned_cols=39 Identities=38% Similarity=0.657 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+||+|||||+|||+||++|+++|++|+|+|+...+||.+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 899999999999999999999999999999999998754
No 131
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.27 E-value=7.2e-05 Score=86.19 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=34.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+||+|||||++|+.||+.+++.|.+|+|+|+....+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975544444
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.25 E-value=8.1e-06 Score=94.25 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=35.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
...+||+|||||+|||+||.+|++.|++|+|+|. ++||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 3459999999999999999999999999999974 678754
No 133
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.24 E-value=9.7e-06 Score=91.49 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||+|.|||+||..++ .|.+|+|+||.+..||
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 489999999999999999984 7999999999988776
No 134
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=2.6e-05 Score=91.27 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||+.++++| .+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 389999999999999999999874 89999999876665
No 135
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.22 E-value=3e-05 Score=86.10 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=38.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCCcceeeEee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTK 89 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~~S~ 89 (737)
+.++-|||+|||+|+||.+|.+. |.+|+|||+.+.+||.+-+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 47889999999999999999997 45899999999999988544
No 136
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.22 E-value=3.1e-05 Score=88.84 Aligned_cols=38 Identities=42% Similarity=0.510 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
.+||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 3899999999999999999999997 9999999877763
No 137
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.17 E-value=5.7e-05 Score=88.37 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=34.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 7999999999999999999999999999998876663
No 138
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=5.5e-05 Score=88.64 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999877666
No 139
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.16 E-value=2.8e-06 Score=96.44 Aligned_cols=42 Identities=36% Similarity=0.504 Sum_probs=39.0
Q ss_pred CCcEEEECccHHHHHHHHHHHH--CCCcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMR--LGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak--~G~~V~VLEa~~r~GGr~~S 88 (737)
.++|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4789999999999999999997 79999999999999998864
No 140
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=5.1e-05 Score=89.53 Aligned_cols=38 Identities=39% Similarity=0.424 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 48999999999999999999999999999999876555
No 141
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.14 E-value=4e-05 Score=86.58 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=39.3
Q ss_pred eecCCCHHHHHHHHHH-----cCCcccCceEEEEEec--CCcEE-EEE--CCeEEEecEEEEccC
Q 004684 240 CFLPGGNGRLVQALVE-----NVPILYEKTVHTIRYG--SDGVQ-VLA--GSQVFEGDMVLCTVP 294 (737)
Q Consensus 240 ~~~~gG~~~Lv~aLa~-----gl~I~lnt~V~~I~~~--~~~V~-V~~--~G~~i~AD~VI~AvP 294 (737)
.++.++...+++.|.+ +++|+++++|++|..+ ++.+. |.. ++.++.++.||+|+.
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 3444555667777644 6789999999999876 34443 333 446899999999997
No 142
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.13 E-value=4.4e-05 Score=89.77 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (737)
.+||+|||||+|||+||..++++ |.+|+|+|+....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 48999999999999999999998 99999999987543
No 143
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.13 E-value=8.4e-05 Score=87.03 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=38.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++||+|||+|.+||+||+.++++|.+|+|+|+.+.+||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 358999999999999999999999999999999999998553
No 144
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.11 E-value=3.2e-06 Score=102.65 Aligned_cols=42 Identities=48% Similarity=0.651 Sum_probs=39.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S 88 (737)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 489999999999999999999999999999999999998854
No 145
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.11 E-value=3e-06 Score=103.66 Aligned_cols=41 Identities=39% Similarity=0.519 Sum_probs=39.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||+|||+||++|++.|++|+|||+.+++||.++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 48999999999999999999999999999999999999875
No 146
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.10 E-value=5.9e-05 Score=86.93 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
.+||+|||+|+|||+||..+++ |.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 4899999999999999999976 9999999999877763
No 147
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.07 E-value=9e-05 Score=84.54 Aligned_cols=33 Identities=42% Similarity=0.688 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999974
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.07 E-value=2.6e-06 Score=92.56 Aligned_cols=35 Identities=49% Similarity=0.684 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
+||+|||||++||++|..|+++|++|+|||+++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
No 149
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.07 E-value=3.4e-06 Score=96.09 Aligned_cols=40 Identities=43% Similarity=0.624 Sum_probs=38.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.+||+|||||++|++||++|++.|++|+|+|+.+.+||.|
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC 44 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 4999999999999999999999999999999988999866
No 150
>PRK12831 putative oxidoreductase; Provisional
Probab=98.06 E-value=5.4e-06 Score=94.35 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=39.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 348999999999999999999999999999999999999774
No 151
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=3.3e-06 Score=94.43 Aligned_cols=40 Identities=53% Similarity=0.682 Sum_probs=37.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
..+|+|||||.|||+||+.|.+.|++|+|||+++.+||.-
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 3899999999999999999999999999999999999844
No 152
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.05 E-value=5.7e-06 Score=93.43 Aligned_cols=48 Identities=33% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCc-EEEEccCCCcceeeEeeecC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRKRAGGRVYTKKME 92 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~r~GGr~~S~~~~ 92 (737)
...+||+|||||+|||++|++|.++|.. ++||||++++||--+..+..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~ 54 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYP 54 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCC
Confidence 3459999999999999999999999998 99999999999854444433
No 153
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.03 E-value=4.7e-06 Score=94.94 Aligned_cols=39 Identities=36% Similarity=0.607 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
|||+|||||++|++||++|++.|++|+|+|+ +++||.|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 8999999999999999999999999999999 89999774
No 154
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02 E-value=0.00012 Score=85.86 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC---CcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~r~GG 84 (737)
++||+|||||+|||+||..++++| .+|+|+||....||
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 489999999999999999999998 89999999887776
No 155
>PLN02985 squalene monooxygenase
Probab=98.01 E-value=1.6e-05 Score=91.59 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=33.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
...+||+|||||++||++|+.|+++|++|+|+|+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3458999999999999999999999999999999753
No 156
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=0.00011 Score=85.59 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC-cce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r-~GG 84 (737)
.+||+|||||.|||+||..+ +.|.+|+|+||... .||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG 44 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG 44 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc
Confidence 48999999999999999999 99999999999764 344
No 157
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.00 E-value=5.5e-06 Score=93.93 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=37.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+|||+|||||++|++||..+++.|++|+|+|+ +++||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 49999999999999999999999999999999 58999764
No 158
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.00 E-value=5.5e-06 Score=94.03 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+|||+|||||.+|++||..|++.|++|+|+|+ +.+||.|-
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 59999999999999999999999999999999 57898664
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=5.9e-06 Score=94.20 Aligned_cols=41 Identities=37% Similarity=0.640 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+|||+|||||.+|++||..+++.|.+|+|+|+.+.+||.|-
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 38999999999999999999999999999998888999763
No 160
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=90.01 Aligned_cols=75 Identities=36% Similarity=0.436 Sum_probs=58.1
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhhcCCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 4 ESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
+.-+-+|+.+.-.+.+.-.++|++..- .+..... .+|+|||||++||+||+.|+++|++|+|+|+.+++|
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~i~~~--------~~~~~tg--~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGWIPGE--------LPGSRTG--KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCCCCCC--------CCCCCCC--CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 345667777777777776677766542 1111112 899999999999999999999999999999999999
Q ss_pred eeeEe
Q 004684 84 GRVYT 88 (737)
Q Consensus 84 Gr~~S 88 (737)
|++..
T Consensus 160 Gll~y 164 (457)
T COG0493 160 GLLLY 164 (457)
T ss_pred eeEEe
Confidence 98864
No 161
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.97 E-value=0.00022 Score=74.23 Aligned_cols=38 Identities=42% Similarity=0.629 Sum_probs=35.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.|||||+|+|||+|+..|...|-.|+++|+...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 59999999999999999999988899999999999854
No 162
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.97 E-value=6.2e-06 Score=89.80 Aligned_cols=43 Identities=42% Similarity=0.687 Sum_probs=40.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTK 89 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~ 89 (737)
..+|+|||||+|||+||..|++.|++|.|+|+++.+|||+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 4789999999999999999999999999999999999997543
No 163
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.97 E-value=5.7e-06 Score=95.24 Aligned_cols=39 Identities=49% Similarity=0.677 Sum_probs=33.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
++|+|||||+|||+||..|.+.|++|++||+++.+||--
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 789999999999999999999999999999999999943
No 164
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=7.7e-06 Score=92.55 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC-cceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r-~GGr~~ 87 (737)
++||+|||||.||++||..|++.|++|+|+|+.+. +||.|.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 49999999999999999999999999999999864 688653
No 165
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.96 E-value=9e-06 Score=98.44 Aligned_cols=42 Identities=55% Similarity=0.680 Sum_probs=39.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S 88 (737)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 489999999999999999999999999999999999998764
No 166
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.95 E-value=0.00012 Score=84.41 Aligned_cols=34 Identities=38% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..+||+|||||+|||+||..++ |.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3589999999999999999996 579999999876
No 167
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=1e-05 Score=91.72 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC-CcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK-RAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~-r~GGr~~ 87 (737)
.|||+|||||.+|++||++|++.|++|+|+|+.+ .+||.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 4999999999999999999999999999999976 4788664
No 168
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.94 E-value=0.00019 Score=83.97 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCccee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr 85 (737)
++||+|||||+|||+||..++++ |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 38999999999999999999987 5899999999887763
No 169
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.92 E-value=8.3e-06 Score=91.96 Aligned_cols=38 Identities=39% Similarity=0.537 Sum_probs=32.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
||||||||++|++||+.+++.|.+|+|+|+.+.+||.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 89999999999999999999999999999999999854
No 170
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.92 E-value=1.4e-05 Score=90.71 Aligned_cols=41 Identities=49% Similarity=0.687 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 48999999999999999999999999999999999999764
No 171
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.92 E-value=1.2e-05 Score=91.05 Aligned_cols=36 Identities=42% Similarity=0.577 Sum_probs=33.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
...+||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 446999999999999999999999999999999975
No 172
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=9.7e-06 Score=92.40 Aligned_cols=40 Identities=40% Similarity=0.672 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.+||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 4999999999999999999999999999999976 898664
No 173
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.91 E-value=1.2e-05 Score=93.73 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.|||+|||||+|||+||.+|++.|++|+|+|+. ++||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 499999999999999999999999999999994 7888764
No 174
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.91 E-value=9.9e-06 Score=90.15 Aligned_cols=32 Identities=41% Similarity=0.574 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
|||+|||||+||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 175
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=0.00032 Score=82.25 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||+.+++. .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 48999999999999999999987 89999999875554
No 176
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.89 E-value=1.4e-05 Score=98.75 Aligned_cols=41 Identities=41% Similarity=0.560 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 48999999999999999999999999999999999999765
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=1.2e-05 Score=91.75 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+.|||+|||||.+|++||..|++.|++|+|+|+. ++||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 3599999999999999999999999999999985 8898664
No 178
>PRK06116 glutathione reductase; Validated
Probab=97.88 E-value=1e-05 Score=91.91 Aligned_cols=39 Identities=33% Similarity=0.656 Sum_probs=36.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.+||+|||||++|++||..|++.|++|+|+|+. .+||-|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 499999999999999999999999999999985 888866
No 179
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.88 E-value=1.8e-05 Score=88.84 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEccCCCcceeeEee
Q 004684 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRKRAGGRVYTK 89 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~r~GGr~~S~ 89 (737)
.++|+|||||+|||+||.+|. +.|++|+|||+.+.+||.++.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 478999999999999999765 6799999999999999988753
No 180
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=1.4e-05 Score=91.18 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+|||+|||||.+|++||..|++.|++|+|+|+.+.+||.|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 4999999999999999999999999999999988899865
No 181
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=1.3e-05 Score=91.18 Aligned_cols=40 Identities=45% Similarity=0.680 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.|||+|||||++|++||.+|++.|.+|+|+|+ +.+||.|.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 49999999999999999999999999999999 78888653
No 182
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.86 E-value=1.5e-05 Score=91.70 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
++||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 49999999999999999999999999999999865443
No 183
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.85 E-value=2e-05 Score=95.21 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 48999999999999999999999999999999999999764
No 184
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.85 E-value=1.4e-05 Score=88.87 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=33.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
||+|||||+|||++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877664
No 185
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.84 E-value=1.7e-05 Score=94.31 Aligned_cols=41 Identities=46% Similarity=0.609 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 48999999999999999999999999999999999999765
No 186
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.84 E-value=1.6e-05 Score=88.66 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 38999999999999999999999999999999874
No 187
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.84 E-value=1.5e-05 Score=89.00 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=33.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 188
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.83 E-value=1.6e-05 Score=85.75 Aligned_cols=36 Identities=42% Similarity=0.708 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+||||||||+||++|..|.++|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 479999999999999999999999999999997654
No 189
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.83 E-value=2.2e-05 Score=93.05 Aligned_cols=41 Identities=44% Similarity=0.679 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||+.|++.|++|+|+|+.+++||.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 48999999999999999999999999999999999999774
No 190
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=1.8e-05 Score=90.29 Aligned_cols=40 Identities=35% Similarity=0.555 Sum_probs=36.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 499999999999999999999999999999985 6787653
No 191
>PRK10262 thioredoxin reductase; Provisional
Probab=97.82 E-value=1.9e-05 Score=85.52 Aligned_cols=41 Identities=27% Similarity=0.524 Sum_probs=36.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+.+||+|||||+|||+||..|++.|++|+|+|+ ..+||.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 459999999999999999999999999999996 46788654
No 192
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=1.9e-05 Score=90.07 Aligned_cols=40 Identities=38% Similarity=0.570 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
++||+|||||++|++||.+|++.|.+|+|+|+ +.+||.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 49999999999999999999999999999998 57888764
No 193
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=2.3e-05 Score=97.11 Aligned_cols=43 Identities=44% Similarity=0.639 Sum_probs=40.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEe
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S 88 (737)
..+||+|||||+|||+||.+|++.|++|+|+|+.+++||.++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998864
No 194
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.80 E-value=2e-05 Score=90.89 Aligned_cols=40 Identities=35% Similarity=0.618 Sum_probs=36.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.++||+||||| +||+||+++++.|.+|+|||+....||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 35899999999 99999999999999999999999888844
No 195
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=2.8e-05 Score=88.54 Aligned_cols=42 Identities=50% Similarity=0.771 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 348999999999999999999999999999999999998754
No 196
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.79 E-value=0.00069 Score=74.75 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=35.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
+++|||+|||||.|.+-++.|++. ..+|+|+|+.+.++.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ 42 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL 42 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence 359999999999999999999996 578999999998874
No 197
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.79 E-value=3.1e-05 Score=88.44 Aligned_cols=41 Identities=51% Similarity=0.712 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 48999999999999999999999999999999999999764
No 198
>PRK14694 putative mercuric reductase; Provisional
Probab=97.79 E-value=2.3e-05 Score=89.43 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 4599999999999999999999999999999985 7898664
No 199
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.78 E-value=0.0005 Score=75.24 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=34.1
Q ss_pred cCCcccCceEEEEEecCCcEE-EEE-CCeEEEecEEEEccCh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~-V~~-~G~~i~AD~VI~AvP~ 295 (737)
|++|+++++|.+|+..++.+. |.+ +|+++.+|+||+|+.-
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 578999999999999988654 333 8889999999999864
No 200
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.77 E-value=2.5e-05 Score=91.57 Aligned_cols=41 Identities=51% Similarity=0.688 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||+|+|||+||-.|-++|+.|+|+|+++|+||.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 38999999999999999999999999999999999999764
No 201
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.76 E-value=5.5e-05 Score=89.60 Aligned_cols=41 Identities=41% Similarity=0.599 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||+.|++.|++|+|||+.+++||.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 48999999999999999999999999999999999999765
No 202
>PRK14727 putative mercuric reductase; Provisional
Probab=97.75 E-value=3.5e-05 Score=88.21 Aligned_cols=41 Identities=41% Similarity=0.597 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
++||+|||||.+|++||+.|++.|.+|+|+|+.+.+||.|.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 49999999999999999999999999999999889999764
No 203
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.75 E-value=2.5e-05 Score=88.99 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=35.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
|||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999864 887653
No 204
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.75 E-value=3.1e-05 Score=92.78 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 489999999999999999999999999999998776653
No 205
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.73 E-value=7.2e-05 Score=85.31 Aligned_cols=42 Identities=45% Similarity=0.612 Sum_probs=39.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 348999999999999999999999999999999999999775
No 206
>PRK13748 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.1e-05 Score=90.53 Aligned_cols=40 Identities=43% Similarity=0.558 Sum_probs=37.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.+||+|||||.+|++||..|++.|.+|+|+|+. ++||-|.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 599999999999999999999999999999996 8998654
No 207
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.72 E-value=3.1e-05 Score=89.34 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC-CCccee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGR 85 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~GGr 85 (737)
.+||+|||||+||+.||+.+++.|++|+|+|++ +.+|+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 499999999999999999999999999999997 477754
No 208
>PTZ00058 glutathione reductase; Provisional
Probab=97.71 E-value=4.9e-05 Score=88.15 Aligned_cols=41 Identities=34% Similarity=0.493 Sum_probs=37.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.+|||+|||||.+|++||..+++.|.+|+|+|+. .+||.|-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 4589999999999999999999999999999985 7999774
No 209
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.2e-05 Score=82.77 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEe
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S 88 (737)
.+||+|||||++||+||.+++++|.+++|++....+||....
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~ 44 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK 44 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc
Confidence 599999999999999999999999994444444677765443
No 210
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.70 E-value=3.4e-05 Score=90.90 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=35.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+.+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999865555
No 211
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.68 E-value=4.3e-05 Score=89.02 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
++||+|||+|++||+||+.|+++|.+|+|||+....||.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5999999999999999999999999999999998888854
No 212
>PRK12839 hypothetical protein; Provisional
Probab=97.66 E-value=4.8e-05 Score=88.78 Aligned_cols=42 Identities=33% Similarity=0.473 Sum_probs=39.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..+||+|||+|.+||+||+.|++.|.+|+|+|+...+||.+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 359999999999999999999999999999999999998664
No 213
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=4.2e-05 Score=87.49 Aligned_cols=32 Identities=41% Similarity=0.688 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
.|||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 49999999999999999999999999999998
No 214
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.65 E-value=5e-05 Score=84.01 Aligned_cols=36 Identities=47% Similarity=0.488 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 799999999999999999999999999999877554
No 215
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.64 E-value=4.4e-05 Score=84.38 Aligned_cols=36 Identities=39% Similarity=0.705 Sum_probs=33.9
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
||+|||||+|||++|+.|+++ |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999997 999999999987776
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.64 E-value=4.8e-05 Score=87.49 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
.|||+|||||.+|++||..|++.|.+|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 38999999999999999999999999999996
No 217
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00015 Score=81.95 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHHHHHH-----cCCcccCceEEEEEecCCc-EEEEECCeEEEecEEEEccChhh
Q 004684 247 GRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLAGSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 247 ~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~-V~V~~~G~~i~AD~VI~AvP~~~ 297 (737)
..++.+|+. |..|..||+|++|....++ +.|.|.-..+++.+||-|+...+
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHH
Confidence 445566543 5679999999999987665 55777667789999999988764
No 218
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.61 E-value=8e-05 Score=85.33 Aligned_cols=41 Identities=51% Similarity=0.707 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||++|++.|++|+|+|+.+++||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 37999999999999999999999999999999999999775
No 219
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.60 E-value=7e-05 Score=87.30 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=37.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+++||+|||+|.+|++||..++++|.+|+|||+...+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 45999999999999999999999999999999999888743
No 220
>PLN02507 glutathione reductase
Probab=97.59 E-value=6.3e-05 Score=86.49 Aligned_cols=40 Identities=35% Similarity=0.503 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEcc---------CCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG---------RKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa---------~~r~GGr~ 86 (737)
+|||+|||||.+|++||..+++.|.+|+|+|+ .+.+||-|
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc 73 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTC 73 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCcccee
Confidence 59999999999999999999999999999996 34566655
No 221
>PTZ00367 squalene epoxidase; Provisional
Probab=97.58 E-value=6.2e-05 Score=87.37 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5999999999999999999999999999999964
No 222
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.58 E-value=8.3e-05 Score=86.36 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 459999999999999999999999999999999987776
No 223
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.57 E-value=5.6e-05 Score=80.97 Aligned_cols=43 Identities=40% Similarity=0.672 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC------CCcEEEEccCCCcceeeEe
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYT 88 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~------G~~V~VLEa~~r~GGr~~S 88 (737)
+.+||+|||||.|||+||.+|.+. .++|+|+|+...+||.+-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 458999999999999999998763 3689999999999987654
No 224
>PLN02815 L-aspartate oxidase
Probab=97.57 E-value=8.4e-05 Score=86.89 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=35.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
..++||+|||||+|||+||..+++.| +|+|+||....||
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 34589999999999999999999999 9999999988776
No 225
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.57 E-value=0.00011 Score=86.07 Aligned_cols=42 Identities=45% Similarity=0.661 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
...+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 348999999999999999999999999999999999999664
No 226
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=6.8e-05 Score=87.92 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=35.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 7999999999999999999999999999999887665
No 227
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.55 E-value=9e-05 Score=86.94 Aligned_cols=39 Identities=36% Similarity=0.524 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 348999999999999999999999999999999877665
No 228
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.53 E-value=0.00048 Score=78.19 Aligned_cols=32 Identities=41% Similarity=0.671 Sum_probs=27.4
Q ss_pred cEEEECccHHHHHHHHHHHHCC---CcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~ 80 (737)
||+|||||.||..+|..|++.+ ++|+|+|+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 7999999999999999999998 8999999965
No 229
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.52 E-value=8.5e-05 Score=82.66 Aligned_cols=37 Identities=43% Similarity=0.451 Sum_probs=33.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999887653
No 230
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=8.2e-05 Score=86.87 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999876665
No 231
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.52 E-value=9.1e-05 Score=86.09 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
...+||+|||||+|||+||..++ .|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34589999999999999999996 59999999999887773
No 232
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.50 E-value=6.5e-05 Score=80.19 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r~ 82 (737)
|||||||||.+|.++|.+|+++| .+|+|||+..+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999998 699999997643
No 233
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.49 E-value=9.2e-05 Score=87.30 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=35.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
..+||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 358999999999999999999999999999999877665
No 234
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.49 E-value=0.00015 Score=79.52 Aligned_cols=41 Identities=44% Similarity=0.613 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.++|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 37999999999999999999999999999999999999765
No 235
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.49 E-value=9.5e-05 Score=87.06 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 48999999999999999999999999999999877666
No 236
>PLN02546 glutathione reductase
Probab=97.47 E-value=0.00011 Score=85.43 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
+|||+|||||.+|+.||..|++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 237
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.47 E-value=0.00011 Score=84.03 Aligned_cols=40 Identities=35% Similarity=0.526 Sum_probs=35.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEccC--------CCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGR--------KRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~--------~r~GGr~ 86 (737)
.|||+|||||.+|.+||..+++. |.+|+|+|+. +.+||-|
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 49999999999999999999997 9999999984 5677755
No 238
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.45 E-value=0.00013 Score=82.08 Aligned_cols=41 Identities=41% Similarity=0.663 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.||++|||||.+|.+||.++++.|.+|.|+|+..++||-|-
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 59999999999999999999999999999999889998764
No 239
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.00011 Score=86.23 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 348999999999999999999999999999999876665
No 240
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.45 E-value=7.6e-05 Score=81.81 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEE-ccCCCcceeeEe
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVL-EGRKRAGGRVYT 88 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VL-Ea~~r~GGr~~S 88 (737)
||+|||||+||+.||+.+++.|.+|+|+ +..+.+|....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn 41 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN 41 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch
Confidence 8999999999999999999999999999 666666654443
No 241
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.45 E-value=0.00013 Score=72.71 Aligned_cols=32 Identities=44% Similarity=0.669 Sum_probs=30.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
||+|||||+|||+||.+|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998865
No 242
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.44 E-value=4.1e-05 Score=75.03 Aligned_cols=66 Identities=27% Similarity=0.583 Sum_probs=49.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCC-CCcHHHHHHHH
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQ 124 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~ 124 (737)
.||+|||||-+||+|||+++++ ..+|.++|++-.+||-++ +|+..|... -+.|-..++++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------------LGGQLFSAMvvRKPAhLFL~E 139 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------------LGGQLFSAMVVRKPAHLFLQE 139 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------------ccchhhhhhhhcChHHHHHHH
Confidence 6999999999999999999976 578999999999987443 234444322 23455567889
Q ss_pred hCCCee
Q 004684 125 LGSLLH 130 (737)
Q Consensus 125 LGl~~~ 130 (737)
+|++..
T Consensus 140 igvpYe 145 (328)
T KOG2960|consen 140 IGVPYE 145 (328)
T ss_pred hCCCcc
Confidence 998753
No 243
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.43 E-value=0.00015 Score=75.62 Aligned_cols=38 Identities=47% Similarity=0.721 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC--Ccce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~--r~GG 84 (737)
.+||||||||++||.||.+|+.+|++|+|+|... .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 4899999999999999999999999999999753 3454
No 244
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.40 E-value=0.00014 Score=86.23 Aligned_cols=38 Identities=37% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..++++|.+|+|+|+....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 48999999999999999999999999999999876554
No 245
>PRK13984 putative oxidoreductase; Provisional
Probab=97.40 E-value=0.00021 Score=84.38 Aligned_cols=42 Identities=38% Similarity=0.638 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..++|+|||||++||+||+.|++.|++|+|||+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 448999999999999999999999999999999999998654
No 246
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.37 E-value=0.00018 Score=84.84 Aligned_cols=41 Identities=34% Similarity=0.580 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC-CCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~GGr~~ 87 (737)
+|||+|||||.+|++||..+++.|.+|+|+|+. +.+||-|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 589999999999999999999999999999974 47888664
No 247
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.37 E-value=0.00022 Score=89.90 Aligned_cols=41 Identities=39% Similarity=0.572 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
.++||+|||||.|||+||..+++.|.+|+|+||....||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 45899999999999999999999999999999999999843
No 248
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.36 E-value=0.00029 Score=59.78 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=32.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
+|+|||||+.|+-.|..|++.|.+|+|+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999998764
No 249
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.34 E-value=0.00018 Score=82.68 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=35.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
+||+|||||++|++||++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988875
No 250
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.31 E-value=0.00018 Score=84.17 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
.+||+|||||+|||+||..+++. |.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 48999999999999999999987 479999999887776
No 251
>PRK08275 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.00023 Score=83.06 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (737)
.+||+|||||+|||+||..++++ |.+|+|+||....+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 48999999999999999999987 68999999987643
No 252
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.24 E-value=0.00035 Score=74.52 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
....||||||||++|-+-|+.|+|.|.+|.|+|+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34589999999999999999999999999999984
No 253
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.24 E-value=0.00028 Score=80.37 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=34.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
++|+|||||.+|++||..|++.|.+|+|+|+. .+||-|
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 37999999999999999999999999999985 577755
No 254
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.24 E-value=0.00029 Score=80.75 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.|||+|||||.+|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 389999999999999999999999999999974
No 255
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.21 E-value=0.00031 Score=81.60 Aligned_cols=37 Identities=41% Similarity=0.530 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+||+|||+|+|||+||..+++. .+|+|+||....||
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 48999999999999999999987 89999999987776
No 256
>PRK02106 choline dehydrogenase; Validated
Probab=97.21 E-value=0.00035 Score=81.69 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHH-CCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak-~G~~V~VLEa~~ 80 (737)
.+|+||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4999999999999999999999 799999999975
No 257
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.18 E-value=0.00033 Score=84.72 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r 81 (737)
++|+|||||++||+||+.|++. |++|+|||++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999764
No 258
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.16 E-value=0.00043 Score=77.47 Aligned_cols=34 Identities=47% Similarity=0.644 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++||+|||||++|++||+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999863
No 259
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.002 Score=69.45 Aligned_cols=235 Identities=16% Similarity=0.154 Sum_probs=119.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCC----------C----CCCccceEeccccceecCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG----------G----AGNRISASADLGGSVLTGT 113 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g----------~----~g~~~~~~~D~G~~~~~~~ 113 (737)
+||+|+|-|+.=..-+..|+..|.+|+.+|+++.-||-..|.+..- . .|....+.+|+=+-++...
T Consensus 5 yDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn 84 (440)
T KOG1439|consen 5 YDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMAN 84 (440)
T ss_pred eeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhcc
Confidence 9999999999998888899999999999999999999888765321 0 0111233344444433322
Q ss_pred CCcHHHHHHHHhCCCeee-e-cCCcceEecCCcccCchhh-----------HHHHHHHHHHHHHHHHHHHHhhhhccC--
Q 004684 114 LGNPLGILAKQLGSLLHK-V-RDKCPLYRLDGNSVDPEID-----------MKVEADFNRLLDKASRLRQLMGEVAMD-- 178 (737)
Q Consensus 114 ~~~~l~~L~~~LGl~~~~-~-~~~~~~~~~~G~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~~~~~~-- 178 (737)
+ .+-.++-+.|+.-.. + .-...+++.+|+.+..+.. ..-+..+.+++.....+.+........
T Consensus 85 -~-~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~ 162 (440)
T KOG1439|consen 85 -G-ELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYD 162 (440)
T ss_pred -c-hHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccccc
Confidence 1 233345555553221 1 1223444555565543322 112344445555444433322111111
Q ss_pred ---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHH----h---hhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHH
Q 004684 179 ---VSLGSALETFWRVYWDSGNAEAMNLFNWHLA----N---LEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGR 248 (737)
Q Consensus 179 ---~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~ 248 (737)
.++.+++..+. .. .....+. .+.. . +.......+..+. .+......+... ..+++..|++.
T Consensus 163 ~~k~tm~~~~~~~~----l~--~~~~~f~-gh~~al~~dd~~ld~p~~~~~~ri~-~Y~~S~~~yg~~-~ylyP~yGlgE 233 (440)
T KOG1439|consen 163 LSKDTMREFLGKFG----LL--EGTIDFI-GHAIALLCDDSYLDQPAKETLERIL-LYVRSFARYGKS-PYLYPLYGLGE 233 (440)
T ss_pred cccchHHHHHHHhc----cc--ccceeee-eeeeEEEecchhccCccHHHHHHHH-HHHHHHhhcCCC-cceecccCcch
Confidence 12333322211 00 0000000 0000 0 0000000011111 111111111111 26788899999
Q ss_pred HHHHHHH-----cCCcccCceEEEEEecCCcEEEEE--CCeEEEecEEEEcc
Q 004684 249 LVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTV 293 (737)
Q Consensus 249 Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~V~~--~G~~i~AD~VI~Av 293 (737)
|.+.+++ |....+|.++.+|..++++..+.. +++...+..+||-.
T Consensus 234 L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dp 285 (440)
T KOG1439|consen 234 LPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDP 285 (440)
T ss_pred hhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecC
Confidence 9999987 567999999999999655544333 66777777777643
No 260
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.14 E-value=0.002 Score=68.50 Aligned_cols=40 Identities=43% Similarity=0.606 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCCcceee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~ 86 (737)
++.+-|||+|+|||+||.+|.+. |.++.+||.-.-.||-.
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSl 65 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSL 65 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCC
Confidence 48899999999999999999986 56899999999999855
No 261
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00044 Score=72.41 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++||+|||||+|||+||..|+++|.++.|+-..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 489999999999999999999999998888763
No 262
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.11 E-value=0.00039 Score=81.77 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=32.4
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
|+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999886653
No 263
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.10 E-value=0.00048 Score=78.62 Aligned_cols=39 Identities=38% Similarity=0.568 Sum_probs=35.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+||+|||||.+|+.||..|++.|.+|+|+|+. .+||.|-
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 68999999999999999999999999999985 5888664
No 264
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.08 E-value=0.00049 Score=79.67 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=36.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.++||+|||||.|||.||..++++|.+|+|+||....+|
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 359999999999999999999999999999999887764
No 265
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.025 Score=60.49 Aligned_cols=239 Identities=15% Similarity=0.121 Sum_probs=121.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCC-------------CCCccceEeccccceecCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGG-------------AGNRISASADLGGSVLTGT 113 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~-------------~g~~~~~~~D~G~~~~~~~ 113 (737)
.+||+|+|-|+.=..-+..|+-+|.+|+++|+++.-|+-..|.+...- .+....+.+|+=+-.+...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~ 85 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFAN 85 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhccc
Confidence 499999999999999999999999999999999999998877654210 0001123344444433322
Q ss_pred CCcHHHHHHHHhCCCeee-e-cCCcceEecCCcccCchh-----------hHHHHHHHHHHHHHHHHHHHHhhh---hcc
Q 004684 114 LGNPLGILAKQLGSLLHK-V-RDKCPLYRLDGNSVDPEI-----------DMKVEADFNRLLDKASRLRQLMGE---VAM 177 (737)
Q Consensus 114 ~~~~l~~L~~~LGl~~~~-~-~~~~~~~~~~G~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~~---~~~ 177 (737)
. .+..++-+.|+.-.. + .-...+++.+|+....+. ....+....+++.++..+.+.... ...
T Consensus 86 s--~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e 163 (434)
T COG5044 86 S--ELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYE 163 (434)
T ss_pred c--hHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhh
Confidence 1 233355555653221 1 112233444445443321 112234455556555554442111 111
Q ss_pred CCCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhhhhchhhhhhHHHHhhccCCCCCCCCCeeecCCCHHHHHHHHHH-
Q 004684 178 DVSLGSALETFWRVYWDSGNA-EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE- 255 (737)
Q Consensus 178 ~~sl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~Lv~aLa~- 255 (737)
+... ++.....++..... +..-.--....++..........+ +.+......+. .....+++-|.+.|.+.+++
T Consensus 164 ~k~~---~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erI-l~Y~~Sf~~yg-~~pyLyp~YGl~El~QGFaRs 238 (434)
T COG5044 164 SKDT---MEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERI-LRYMRSFGDYG-KSPYLYPRYGLGELSQGFARS 238 (434)
T ss_pred cccH---HHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHH-HHHHHhhcccC-CCcceeeccCchhhhHHHHHh
Confidence 1112 22222222221111 111000000011111111111111 11221111111 12356788889999999987
Q ss_pred ----cCCcccCceEEEEEecCCcE-EEEECCeEEEecEEEEcc
Q 004684 256 ----NVPILYEKTVHTIRYGSDGV-QVLAGSQVFEGDMVLCTV 293 (737)
Q Consensus 256 ----gl~I~lnt~V~~I~~~~~~V-~V~~~G~~i~AD~VI~Av 293 (737)
|..+.+|+++.+|...++ | .|..++.+..|..||...
T Consensus 239 sav~GgtymLn~~i~ein~tk~-v~~v~~~~~~~ka~KiI~~~ 280 (434)
T COG5044 239 SAVYGGTYMLNQAIDEINETKD-VETVDKGSLTQKAGKIISSP 280 (434)
T ss_pred hhccCceeecCcchhhhccccc-eeeeecCcceeecCcccCCc
Confidence 557999999999988776 3 233367788888887654
No 266
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.06 E-value=0.00051 Score=80.53 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHH----HCCCcEEEEccCCC
Q 004684 49 RVLVIGAGLAGLAAARQLM----RLGFRVTVLEGRKR 81 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~La----k~G~~V~VLEa~~r 81 (737)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 78999999999764
No 267
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0007 Score=72.21 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=39.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcceeeEeeecC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKME 92 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~S~~~~ 92 (737)
+.|.|||+|+||+++|+.|.++ +++|+|+|+.+.|+|.++.-..+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAP 67 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAP 67 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCC
Confidence 6999999999999999999985 68999999999999988754433
No 268
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.85 E-value=0.0053 Score=68.05 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.2
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccCh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~ 295 (737)
+++++++++|++|..+++++.+.. +|+++.+|.||+|+..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 677899999999998777777776 8889999999999864
No 269
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.83 E-value=0.00099 Score=82.02 Aligned_cols=36 Identities=39% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..+||+|||||.|||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 358999999999999999999999999999999763
No 270
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.77 E-value=0.0069 Score=68.99 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 36899999999999999999999999999998764
No 271
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.77 E-value=0.0022 Score=66.79 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=37.1
Q ss_pred CCCCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcce
Q 004684 43 PSSNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (737)
Q Consensus 43 ~~~~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (737)
...+++|+||||||+.||+.|++|.-+ +.+|.|||+...++=
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 345679999999999999999999877 899999999988773
No 272
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.74 E-value=0.0016 Score=74.08 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
+|||+|||||.+|..||.. ++|.+|+|+|+ +.+||-|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 4999999999999998754 47999999998 67898663
No 273
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.73 E-value=0.0015 Score=69.70 Aligned_cols=42 Identities=36% Similarity=0.589 Sum_probs=39.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
..+||+|||+|++|-.||...++.|++...+|++..+||-|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 459999999999999999999999999999999999999764
No 274
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.71 E-value=0.0087 Score=66.37 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 249 LVQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 249 Lv~aLa~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
|.+++.+|++|+++++|++|+.+++++.|++ +|..++||+||+|+....
T Consensus 141 l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 141 LLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3333333778999999999999888888887 666799999999998764
No 275
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.68 E-value=0.0016 Score=68.47 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKR 81 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r 81 (737)
.++||+|||||.+|++.||.|.+. |++|+|.|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999774 799999999774
No 276
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.67 E-value=0.0013 Score=76.53 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=30.5
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (737)
|+||||||.+|+.+|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 277
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.67 E-value=0.0017 Score=73.62 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~G 83 (737)
++|+|||||++||+||..|++.| .+|+|+|+++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999975 5899999988764
No 278
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.65 E-value=0.0019 Score=71.74 Aligned_cols=33 Identities=33% Similarity=0.657 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999865
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=96.65 E-value=0.0016 Score=74.02 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
|||+|||||.+|.+||.. +.|.+|+|+|+ +.+||-|
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC 37 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTC 37 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcc
Confidence 899999999999999876 46999999998 5788866
No 280
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0018 Score=75.16 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
+.++|+||||+|.+|-+.|..|++.|.+|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 34599999999999999999999889999999996
No 281
>PLN02785 Protein HOTHEAD
Probab=96.59 E-value=0.0025 Score=74.63 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+..||+||||||.||+..|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 345999999999999999999999 68999999975
No 282
>PRK07846 mycothione reductase; Reviewed
Probab=96.59 E-value=0.0091 Score=67.91 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 6899999999999999999999999999998764
No 283
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.53 E-value=0.0026 Score=72.10 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (737)
++|+|||||++|++||..|++. +.+|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999887 57899999987544
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.52 E-value=0.012 Score=67.02 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 68999999999999999999999999999997643
No 285
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.50 E-value=0.0029 Score=70.60 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC--cEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~r~G 83 (737)
.+|+|||||+||++||..|++.|+ +|+|+++.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 689999999999999999999987 699999986543
No 286
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.48 E-value=0.013 Score=66.74 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999987643
No 287
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.46 E-value=0.026 Score=62.10 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=46.3
Q ss_pred CCCeeecCCCHHHHHHHHHH--cCCcccCceEEEE-EecCCc---EEEEE----CCeEEEecEEEEccChhhh
Q 004684 236 GGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTI-RYGSDG---VQVLA----GSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 236 ~g~~~~~~gG~~~Lv~aLa~--gl~I~lnt~V~~I-~~~~~~---V~V~~----~G~~i~AD~VI~AvP~~~l 298 (737)
.++.+.++||+.++++.|.+ +..+ ++++|++| ...+++ +.|++ +...-.+|.||+|+|+..-
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 35678999999999999976 5678 99999999 444444 34554 2223457999999999643
No 288
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.46 E-value=0.0011 Score=68.44 Aligned_cols=38 Identities=26% Similarity=0.612 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC------CcEEEEccCCCcce
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG------FRVTVLEGRKRAGG 84 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G------~~V~VLEa~~r~GG 84 (737)
.++|+|||||+.|.++||+|++.+ ..|+++|+....||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 389999999999999999999997 78999999877776
No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.41 E-value=0.014 Score=66.32 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 6899999999999999999999999999998654
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.38 E-value=0.0037 Score=70.50 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=32.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..+++|||||||.||+.||..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 3458999999999999999999877899999999774
No 291
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.31 E-value=0.0037 Score=69.46 Aligned_cols=38 Identities=42% Similarity=0.656 Sum_probs=36.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCccee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (737)
.+|+|||||..||.+|..|++.|++|+|+|+.+++||+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 79999999999999999999999999999999999863
No 292
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.19 E-value=0.011 Score=64.55 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r 81 (737)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 389999999999999999999986 89999999774
No 293
>PRK06116 glutathione reductase; Validated
Probab=96.15 E-value=0.028 Score=63.89 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||..|+-.|..|++.|.+|+++++.++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 6899999999999999999999999999998653
No 294
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.0074 Score=63.48 Aligned_cols=34 Identities=44% Similarity=0.517 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..|.|||||+||--|||+++++|++|.++|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 6799999999999999999999999999998754
No 295
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.55 E-value=0.0089 Score=66.43 Aligned_cols=32 Identities=56% Similarity=0.721 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
||+|||+|+|||+||..|.+. ++|+|+=|...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999999654
No 296
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.44 E-value=0.02 Score=60.70 Aligned_cols=43 Identities=33% Similarity=0.442 Sum_probs=39.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeE
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (737)
.+.+|..|||||-.|+++|++.++.|.+|.|.|..-++||-|-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 3469999999999999999999999999999999889999774
No 297
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.016 Score=64.38 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCC---CcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~r~GG 84 (737)
++|+|||+|.+|++.|.+|.+.- ..|.|+|.....|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 79999999999999999999861 23999999998885
No 298
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.29 E-value=0.51 Score=50.87 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHH-HcCCcccCceEEEEEecCCcEE-EEECCeEEEecEEEEccChhhh
Q 004684 246 NGRLVQALV-ENVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGVL 298 (737)
Q Consensus 246 ~~~Lv~aLa-~gl~I~lnt~V~~I~~~~~~V~-V~~~G~~i~AD~VI~AvP~~~l 298 (737)
+..|.+.+. .|++|+.+++|++|..+++++. |.+++++++||.||+|+....-
T Consensus 140 ~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 140 LKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 344444433 3678999999999998887765 5555558999999999987654
No 299
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.016 Score=61.21 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
..||.||||||-+||+||.+.+..|.+|.+||.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 359999999999999999999999999999997
No 300
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.14 E-value=0.019 Score=63.29 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHHC---CCcEEEEccCCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKR 81 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~---G~~V~VLEa~~r 81 (737)
+|+|||||+||+.+|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999754 689999998764
No 301
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.11 E-value=0.025 Score=62.68 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (737)
++|+|||||+||++||..|.+.+ .+|+|+++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 68999999999999999998864 5799999866
No 302
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.11 E-value=0.016 Score=65.14 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEee
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTK 89 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~ 89 (737)
.+||||||||.||+-||+..++.|.+++|+=-+-.-=|.+...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCN 46 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCN 46 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccc
Confidence 3999999999999999999999999998887653333344443
No 303
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.10 E-value=0.025 Score=62.62 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r 81 (737)
+++|||||||++||.+|..|.+.- .+|+|+|+++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 378999999999999999999974 89999999874
No 304
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.97 E-value=0.42 Score=52.77 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=41.6
Q ss_pred eeec-CCCHHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEE--CCeEEEecEEEEccCh
Q 004684 239 HCFL-PGGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 239 ~~~~-~gG~~~Lv~aLa~-----gl~I~lnt~V~~I~~~~~~V~V~~--~G~~i~AD~VI~AvP~ 295 (737)
.+|| ..-.+.++++|.. +++|+++++|++| +++++.+.+ ++..++||+||+|+.-
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 4455 4567888888754 6789999999999 344577766 3457999999999864
No 305
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.016 Score=61.26 Aligned_cols=40 Identities=43% Similarity=0.625 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceee
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (737)
+..|||.|||||+||-+||.+.+++|++.-|+- +|+||.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 345999999999999999999999999865543 5777744
No 306
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.86 E-value=0.03 Score=62.52 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l 180 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch
Confidence 689999999999999999999999999999987664
No 307
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.036 Score=63.52 Aligned_cols=33 Identities=52% Similarity=0.811 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999865
No 308
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.59 E-value=0.04 Score=53.14 Aligned_cols=32 Identities=38% Similarity=0.425 Sum_probs=30.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|+|||||-.|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 309
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.35 E-value=0.043 Score=62.48 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=31.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
+|.|||+|.+|++||+.|.+.|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 310
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.22 E-value=0.055 Score=61.25 Aligned_cols=36 Identities=36% Similarity=0.462 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 368999999999999999999999999999998765
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.00 E-value=0.058 Score=65.91 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHC----CCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~G 83 (737)
++|+|||||++|+.+|..|.+. +++|+|+++.++++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 5899999999999999999764 47999999998875
No 312
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.14 Score=51.35 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEcc----CCCcceeeEeee
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG----RKRAGGRVYTKK 90 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa----~~r~GGr~~S~~ 90 (737)
-+|+|||+|+|+-+||.+++++-.+-+|||. ...+||.+.|.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 5899999999999999999999999999995 345588776643
No 313
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.98 E-value=0.069 Score=52.80 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|+|||||..|..-|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999853
No 314
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.82 E-value=0.068 Score=61.17 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 68999999999999999999999999999997654
No 315
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.64 E-value=0.063 Score=65.33 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=35.7
Q ss_pred HHHHHH-HcCCcccCceEEEEEecCCcEEEEE-CCeEEEecEEEEccCh
Q 004684 249 LVQALV-ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (737)
Q Consensus 249 Lv~aLa-~gl~I~lnt~V~~I~~~~~~V~V~~-~G~~i~AD~VI~AvP~ 295 (737)
+.+.|. .|++|++++.|++|..++....|++ +|+++.+|.||++++.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 344444 3789999999999976554445665 8889999999999864
No 316
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.62 E-value=0.066 Score=53.19 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||.|..||..|..|++.|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999864
No 317
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.46 E-value=0.07 Score=58.09 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=30.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~ 80 (737)
+.+||+|||||+.|++-|..|... ..+|++||..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 359999999999999999999865 46899999983
No 318
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.45 E-value=0.075 Score=61.19 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC-CCcEEEEccCCCc
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRA 82 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~ 82 (737)
...||.||||||-||.+-|..|++. -.+|+|||+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4569999999999999999999997 5799999997644
No 319
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.36 E-value=0.093 Score=59.88 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 68999999999999999999999999999997654
No 320
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.25 E-value=0.065 Score=55.94 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=27.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-------CcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG-------FRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-------~~V~VLEa~ 79 (737)
.++|+|||||+.||++|..+.+.+ .+|+|++-.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 379999999999999999998854 478888743
No 321
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.05 E-value=0.12 Score=58.43 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=33.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+++|||||..|+=-|..+++.|.+|||+|+.+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 367999999999999999999999999999998865
No 322
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.04 E-value=0.12 Score=59.00 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 68999999999999999999999999999997654
No 323
>PRK06370 mercuric reductase; Validated
Probab=93.00 E-value=0.12 Score=58.99 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=33.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 689999999999999999999999999999987653
No 324
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.94 E-value=0.13 Score=58.91 Aligned_cols=36 Identities=42% Similarity=0.544 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 378999999999999999999999999999997654
No 325
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.93 E-value=0.13 Score=58.63 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 68999999999999999999999999999998754
No 326
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.93 E-value=0.9 Score=49.70 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=29.1
Q ss_pred cCCcccCceEEEEEecCC-cEEEEE----C--CeEEEecEEEEccCh
Q 004684 256 NVPILYEKTVHTIRYGSD-GVQVLA----G--SQVFEGDMVLCTVPL 295 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~-~V~V~~----~--G~~i~AD~VI~AvP~ 295 (737)
.+.|+.+++|++++..++ ++.++. . ..++++|.||+|+..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 467899999999999985 788776 2 357899999999863
No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.89 E-value=0.12 Score=59.05 Aligned_cols=35 Identities=37% Similarity=0.552 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 68999999999999999999999999999998754
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.74 E-value=0.14 Score=58.38 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 3689999999999999999999999999999987543
No 329
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.70 E-value=0.14 Score=57.63 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-+|..|++.|.+|+++++.+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 68999999999999999999999999999987643
No 330
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.12 Score=55.64 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||+|..|.+-|..|+++|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999864
No 331
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.64 E-value=0.14 Score=58.46 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999987643
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.63 E-value=0.14 Score=58.16 Aligned_cols=34 Identities=41% Similarity=0.702 Sum_probs=31.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.++|+|||+|.+|+++|..|++.|++|+++|...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
No 333
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.59 E-value=0.13 Score=58.33 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 689999999999999999999999999999987653
No 334
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.57 E-value=0.16 Score=49.48 Aligned_cols=33 Identities=39% Similarity=0.480 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 799999999999999999999999999999753
No 335
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.37 E-value=0.15 Score=53.72 Aligned_cols=46 Identities=37% Similarity=0.510 Sum_probs=40.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC--------CCcceeeEeeecC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR--------KRAGGRVYTKKME 92 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~--------~r~GGr~~S~~~~ 92 (737)
..+|+|||||..|.-||..+.-.|.+|+++|.+ +..|||+.+....
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st 221 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYST 221 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcC
Confidence 378999999999999999999999999999987 6678888776543
No 336
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.33 E-value=0.12 Score=54.30 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=43.4
Q ss_pred HHHHhhhhhcCCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEccCC
Q 004684 20 YLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRK 80 (737)
Q Consensus 20 ~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~-G~-~V~VLEa~~ 80 (737)
||.-+..+.+.+.|-..+.+....+.+.++|.|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus 12 ~l~t~~~~~~~~~~~~~~t~~~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 12 FLSTNSTIKSQTGPFQLATMLARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred hhhhccccccccccEeehhhhhhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 44445555555555554444444555679999999999999999998876 54 699999764
No 337
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.31 E-value=0.18 Score=47.84 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=29.0
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
|+|||+|-.|+..|++|+++|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998854
No 338
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.30 E-value=0.16 Score=58.17 Aligned_cols=35 Identities=40% Similarity=0.532 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 68999999999999999999999999999997643
No 339
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.27 E-value=0.059 Score=60.41 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.++||+|||||.+|-.||.-.+-+|.+|.++|+.|..-|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 458999999999999999999999999999999886655
No 340
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.19 E-value=0.13 Score=56.76 Aligned_cols=39 Identities=38% Similarity=0.542 Sum_probs=32.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEccC-CCcc
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAG 83 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~G 83 (737)
...+||||||||.||.-||...++.|.+.++|-.+ +.+|
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 34599999999999999999999999997777654 4444
No 341
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.19 E-value=0.15 Score=50.81 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||+|.++.-+|+.|++.|.+|+++=+++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4899999999999999999999999999997764
No 342
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.82 E-value=0.18 Score=61.51 Aligned_cols=36 Identities=39% Similarity=0.503 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||||..|+-+|..|++.|.+|+|+|..+++-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 689999999999999999999999999999987653
No 343
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.78 E-value=0.22 Score=56.47 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||.+|+-+|..|.+.|.+|+++++.++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 6899999999999999999999999999998664
No 344
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.73 E-value=0.19 Score=53.54 Aligned_cols=33 Identities=36% Similarity=0.387 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|.+.|..|+++|++|++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999753
No 345
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.45 E-value=0.21 Score=53.27 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|...|..|+++|++|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999854
No 346
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.37 E-value=0.22 Score=57.65 Aligned_cols=34 Identities=41% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||..|+-+|..|++.|.+|+|+|..+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 3689999999999999999999999999998755
No 347
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.33 E-value=0.25 Score=56.52 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=32.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence 579999999999999999999999999999877553
No 348
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.25 E-value=0.21 Score=53.26 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|..-|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 349
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.25 E-value=0.29 Score=47.74 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCcEEEECccH-HHHHHHHHHHHCCCcEEEEccC
Q 004684 46 NKLRVLVIGAGL-AGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 46 ~~~dVvIVGAGi-AGLsAA~~Lak~G~~V~VLEa~ 79 (737)
+.++|+|||+|- +|..+|.+|.+.|.+|+|..++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 348999999995 7999999999999999999975
No 350
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.22 E-value=0.23 Score=53.67 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|..-|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 351
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.20 E-value=0.3 Score=49.32 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||-.|+..+..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3799999999999999999999999999997653
No 352
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.00 E-value=0.24 Score=60.65 Aligned_cols=36 Identities=39% Similarity=0.427 Sum_probs=33.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+++|||||+.||-+|..|++.|.+|+|+|..+++-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 579999999999999999999999999999987653
No 353
>PTZ00058 glutathione reductase; Provisional
Probab=90.91 E-value=0.27 Score=57.42 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 478999999999999999999999999999997653
No 354
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.86 E-value=0.27 Score=58.36 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 589999999999999999999999999999987653
No 355
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.85 E-value=0.29 Score=55.59 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 5799999999999999999999999999998654
No 356
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.72 E-value=0.32 Score=51.91 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+|||+|..|...|..|+++|++|++++.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 67999999999999999999999999999975
No 357
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.72 E-value=0.29 Score=50.23 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=45.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecCCCCCCccceEeccccceecCCCCcHHHHHHHHhCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (737)
++++|||+|--|.+-|..|.+.|++|+++|..+.. +..+ ..-+.+.+.+.+.-.+ ...+++.|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~---~~~~-----------~~~~~~~~~v~gd~t~--~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER---VEEF-----------LADELDTHVVIGDATD--EDVLEEAGI 64 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH---HHHH-----------hhhhcceEEEEecCCC--HHHHHhcCC
Confidence 47999999999999999999999999999986521 1110 0123455565543332 236778887
Q ss_pred Ce
Q 004684 128 LL 129 (737)
Q Consensus 128 ~~ 129 (737)
+.
T Consensus 65 ~~ 66 (225)
T COG0569 65 DD 66 (225)
T ss_pred Cc
Confidence 64
No 358
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.51 E-value=0.33 Score=52.19 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.++|+|||+|--|..-|++|+++|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 378999999999999999999999999999985
No 359
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.45 E-value=0.3 Score=56.58 Aligned_cols=34 Identities=44% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||.+|+-+|..|+..|.+|+|++..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 3689999999999999999999999999998765
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.44 E-value=0.32 Score=55.31 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999864
No 361
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.36 E-value=0.48 Score=44.43 Aligned_cols=33 Identities=45% Similarity=0.568 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc-EEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (737)
..+|+|||||=+|-++++.|.+.|.+ |+|+-++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 48999999999999999999999987 9999875
No 362
>PLN02507 glutathione reductase
Probab=90.28 E-value=0.34 Score=55.91 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 6899999999999999999999999999998764
No 363
>PRK10262 thioredoxin reductase; Provisional
Probab=90.25 E-value=0.35 Score=52.21 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 3689999999999999999999999999999865
No 364
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.18 E-value=0.41 Score=51.63 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|+|||+|.-|.+-|..|+++|++|+++-++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 78999999999999999999999999999874
No 365
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=0.33 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.044 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
++|+|+|.|.+|.+||..|.+.|.+|+|.|..+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 6899999999999999999999999999997543
No 366
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.13 E-value=0.23 Score=44.18 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
..+|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 489999999999999999999999999999886
No 367
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.10 E-value=0.18 Score=51.79 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=27.7
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEccCCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKR 81 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r 81 (737)
+.+||||||||.+||-.|+.. ..+|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999986 457888887654
No 368
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.00 E-value=0.39 Score=54.38 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999987543
No 369
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.96 E-value=0.34 Score=56.64 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
..+|+|||||.+|+-.|..|++.|.+|+++++.++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 36899999999999999999999999999998753
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.87 E-value=0.37 Score=51.47 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|+|||+|-.|.+.|..|++.|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999974
No 371
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.85 E-value=0.43 Score=51.36 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (737)
++|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 689999999999999999999887 899999844
No 372
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.79 E-value=0.67 Score=53.18 Aligned_cols=34 Identities=47% Similarity=0.598 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|+|+|.+||.|+..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3799999999999999999999999999998754
No 373
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.78 E-value=0.35 Score=51.60 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999854
No 374
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.58 E-value=0.42 Score=52.41 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (737)
.+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99998754
No 375
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.57 E-value=0.4 Score=51.25 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
++|+|||+|..|.+.|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999986
No 376
>PRK12831 putative oxidoreductase; Provisional
Probab=89.40 E-value=0.43 Score=54.51 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3799999999999999999999999999998754
No 377
>PLN02546 glutathione reductase
Probab=89.38 E-value=0.44 Score=55.67 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 368999999999999999999999999999987654
No 378
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.31 E-value=0.4 Score=52.37 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||.|..||+.|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999753
No 379
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.29 E-value=0.39 Score=53.95 Aligned_cols=36 Identities=50% Similarity=0.704 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (737)
.++|+|+|-|.+|++||..|.+.|.+|+|.|.+..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 489999999999999999999999999999976654
No 380
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.14 E-value=0.42 Score=50.70 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|.+-|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999998753
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.12 E-value=0.58 Score=47.15 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
..+|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 479999999999999999999999999999754
No 382
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.07 E-value=0.49 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 3689999999999999999999999999999854
No 383
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.97 E-value=0.51 Score=52.20 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+|||+|..|+.+|..|...|.+|++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 67999999999999999999999999999975
No 384
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=88.83 E-value=0.5 Score=54.28 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHC---CCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~---G~~V~VLEa~~r~ 82 (737)
.+|+|||||..|+-.|..|+.. |.+|+|+|+.+++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 6899999999999999877654 9999999998764
No 385
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.80 E-value=0.5 Score=51.52 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|.|||+|.-|.+-|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 67999999999999999999999999999874
No 386
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.79 E-value=0.51 Score=53.82 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|.|+|.|.+|+++|..|.+.|++|++.|..+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 689999999999999999999999999999865
No 387
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.71 E-value=0.53 Score=50.74 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (737)
++|+|||+|..|.+.|+.|+..| .+|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999999 4799999854
No 388
>PRK04148 hypothetical protein; Provisional
Probab=88.64 E-value=0.43 Score=44.62 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|++||.| .|...|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 689999999 999999999999999999998664
No 389
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.51 E-value=0.45 Score=53.49 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|+|||.|..|+..|..|+++|++|++++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999754
No 390
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.43 E-value=0.66 Score=49.92 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.++|.|||+|.-|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4789999999999999999999999999999853
No 391
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.41 E-value=0.65 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3789999999999999999999999 59999984
No 392
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.29 E-value=0.46 Score=53.36 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||.|..|+..|..|+++|++|++++.+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 369999999999999999999999999999865
No 393
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=0.37 Score=51.45 Aligned_cols=35 Identities=40% Similarity=0.409 Sum_probs=29.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+.+||+|||||-+|+-||.-|+--=-.|+|||=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 46899999999999999999985545799999644
No 394
>PRK13748 putative mercuric reductase; Provisional
Probab=88.26 E-value=0.57 Score=54.81 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 68999999999999999999999999999974
No 395
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.23 E-value=0.63 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
++|+|+|+|-+|+++|..|++.|++|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6899999999999999999999999999997654
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.15 E-value=0.71 Score=44.54 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=29.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEc
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLE 77 (737)
..+|+|||||-.|+.=|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4889999999999999999999999999994
No 397
>PRK14694 putative mercuric reductase; Provisional
Probab=88.07 E-value=0.65 Score=53.11 Aligned_cols=31 Identities=52% Similarity=0.691 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
.+|+|||||..|+-.|..|++.|.+|+|++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 6899999999999999999999999999986
No 398
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.04 E-value=0.61 Score=53.65 Aligned_cols=33 Identities=42% Similarity=0.545 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
..+|+|+|.|.+|++|+..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 368999999999999999999999999999964
No 399
>PRK14727 putative mercuric reductase; Provisional
Probab=87.78 E-value=0.65 Score=53.27 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=33.3
Q ss_pred HcCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccCh
Q 004684 255 ENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPL 295 (737)
Q Consensus 255 ~gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~ 295 (737)
.+++|+++++|++|+.+++++.+..+++++.+|.||+|++.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~ 281 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGR 281 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCC
Confidence 36789999999999887777777665556899999999874
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.73 E-value=0.66 Score=49.55 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|||+|..|..-|..|+++|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999854
No 401
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.69 E-value=0.68 Score=53.41 Aligned_cols=31 Identities=42% Similarity=0.558 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 5899999999999999999999999999986
No 402
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.67 E-value=0.66 Score=52.63 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+.|+|+|+|-+|+++|..|++.|++|++.|...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 679999999999999999999999999999754
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.62 E-value=0.62 Score=50.11 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999753
No 404
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.49 E-value=0.83 Score=50.41 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=38.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEccC--------CCcceeeEeeecCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGR--------KRAGGRVYTKKMEG 93 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~--------~r~GGr~~S~~~~g 93 (737)
++|+|||||--|.++|+.|++.| .+|+|-+++ ...++++.+...+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~ 56 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDA 56 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecc
Confidence 68999999999999999999999 899999997 45556666655543
No 405
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.36 E-value=0.75 Score=49.94 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||+|.-|.+-|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 689999999999999999999999999998853
No 406
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.01 E-value=0.7 Score=53.10 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=29.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 5799999999999999999999999999986
No 407
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.01 E-value=0.66 Score=52.84 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
..+|+|+|.|.+|.+||..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3689999999999999999995 9999999954
No 408
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.88 E-value=0.81 Score=51.59 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHH--------------CCCcEEEEccCCCc
Q 004684 48 LRVLVIGAGLAGLAAARQLMR--------------LGFRVTVLEGRKRA 82 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak--------------~G~~V~VLEa~~r~ 82 (737)
.+|+|||||.+|+-.|..|++ .|.+|+|+|+.+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999999876 47889999987654
No 409
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=0.66 Score=50.56 Aligned_cols=46 Identities=30% Similarity=0.362 Sum_probs=42.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcceeeEeeecC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME 92 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~S~~~~ 92 (737)
++||||||-|+.=-.-|...++.|.+|+=||.+..-||.-.|+.+.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 4999999999999998999999999999999999999999888775
No 410
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.74 E-value=0.75 Score=52.97 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|.|||+|..|..-|..|+++|++|+|+|.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 679999999999999999999999999999864
No 411
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=86.55 E-value=1.6 Score=49.99 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhhcCCcccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCC
Q 004684 14 LDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (737)
Q Consensus 14 ~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (737)
+-.+.+||..++-.-+++.... ..+. ......+|+|||+|..|+-+|..+.+.|. +|+|+++++
T Consensus 252 V~~a~~~l~~~~~~~~~~~~~~--~~~~-~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 252 VLQALPFLIANTRQLMGLPESP--EEPL-IDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred cEEHHHHHHHHHHHhcCCCccc--cccc-cccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3455667766554334443211 0010 11123799999999999999999999996 699998865
No 412
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.32 E-value=0.87 Score=49.14 Aligned_cols=32 Identities=38% Similarity=0.474 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|+|||+|..|.+.|..|+++|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999999999999999999999999885
No 413
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.26 E-value=1.7 Score=49.83 Aligned_cols=33 Identities=48% Similarity=0.635 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|+|+|+|..|+.|+..+...|.+|+++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 789999999999999999999999999998854
No 414
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.19 E-value=0.9 Score=51.76 Aligned_cols=34 Identities=44% Similarity=0.577 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (737)
..+|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999998 799998754
No 415
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.01 E-value=0.86 Score=52.59 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (737)
.+|.|||+|..|..-|..|+++|++|+|+|.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6799999999999999999999999999997643
No 416
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.01 E-value=0.8 Score=52.24 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHH-HHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLA-AARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLs-AA~~Lak~G~~V~VLEa~~ 80 (737)
.++|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 367999999999999 5999999999999999865
No 417
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.97 E-value=1 Score=48.21 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||+|-.|+.+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3799999999999999999999999999998864
No 418
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.91 E-value=1.1 Score=44.92 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|+|+|.|-.|..+|..|.+.|.+|++.+.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 789999999999999999999999999998753
No 419
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.67 E-value=1 Score=43.53 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=28.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||-|..|..-|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 589999999999999999999999999999763
No 420
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.47 E-value=0.87 Score=52.46 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|+|||+|..|..-|..|+++|++|+|++.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999853
No 421
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.46 E-value=1 Score=48.89 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|.|||||--|.+-|..|+++|++|+++.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36999999999999999999999999999874
No 422
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=85.27 E-value=1.2 Score=47.50 Aligned_cols=32 Identities=44% Similarity=0.659 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
++|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 789999999999999999999998 69999885
No 423
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.21 E-value=1 Score=54.81 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=31.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc-EEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (737)
..+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999997 99998754
No 424
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.14 E-value=1.6 Score=37.34 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.6
Q ss_pred CcEEEECccHHHHHHHHHHHHC-CCcEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRL-GFRVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa 78 (737)
.+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7899999999999999999998 568999987
No 425
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.13 E-value=1 Score=51.94 Aligned_cols=33 Identities=45% Similarity=0.581 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 679999999999999999999999999999754
No 426
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.12 E-value=0.83 Score=55.07 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
-.+|+|||||..|-.-|+.++.+|++|+++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3679999999999999999999999999999864
No 427
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.96 E-value=1 Score=50.10 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=28.1
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988875 99999999865
No 428
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.96 E-value=1.3 Score=45.55 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc---EEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFR---VTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~---V~VLEa~ 79 (737)
.+|+|+|||-+|..+|+.|.+.|.+ |.|++++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 7899999999999999999999975 8888875
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.89 E-value=1.1 Score=47.59 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|..|.+-|..|.++|++|++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998753
No 430
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.60 E-value=16 Score=42.94 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHHHHHH-----cCCcccCceEEEEEec-CCcEEEE---E--CCe--EEEecEEEEccCh
Q 004684 247 GRLVQALVE-----NVPILYEKTVHTIRYG-SDGVQVL---A--GSQ--VFEGDMVLCTVPL 295 (737)
Q Consensus 247 ~~Lv~aLa~-----gl~I~lnt~V~~I~~~-~~~V~V~---~--~G~--~i~AD~VI~AvP~ 295 (737)
..|..+|.+ +++|+.++.++++..+ +++|... . +|+ .+.|+.||+|+.-
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 345555543 6789999999999986 4455422 1 444 5789999999863
No 431
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.33 E-value=1.2 Score=50.96 Aligned_cols=32 Identities=44% Similarity=0.572 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|.|+|.|-+|+++|..|.+.|.+|++.|..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 67999999999999999999999999999964
No 432
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.32 E-value=1.1 Score=54.06 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.-.+|+|||||..|-.-|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34689999999999999999999999999999864
No 433
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.27 E-value=1.4 Score=47.68 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r 81 (737)
..+|+|||||-.|-+.|+.|+..|+ +|.|+|.+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3789999999999999999999996 8999998653
No 434
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.27 E-value=1.2 Score=47.99 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|+|+|--|...|+.|+++|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997788777654
No 435
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.12 E-value=1.3 Score=49.46 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|+|+|..|+.+|..|...|.+|+|+|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3789999999999999999999999999998754
No 436
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.00 E-value=1.1 Score=47.91 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+|||||..|-.-|+.++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 68999999999999999999988999999986
No 437
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=83.97 E-value=55 Score=36.20 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.0
Q ss_pred CcEEEeccccccccC---ceeeHHHHHHHHHHHHHHHHHh
Q 004684 454 GRLFFAGEATIRRYP---ATMHGAFLSGLRETAKMAHCAN 490 (737)
Q Consensus 454 ~~L~fAGd~ts~~~~---g~~eGAi~SG~~AA~~Il~~l~ 490 (737)
++++++||+...-.| +++.-|+.||..||+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 789999999874322 4888999999999999998774
No 438
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=83.92 E-value=0.52 Score=51.03 Aligned_cols=37 Identities=43% Similarity=0.582 Sum_probs=35.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCCCcce
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (737)
.+.+|||||+.||--+....+.|-+||++|..+.+||
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 6899999999999999999999999999999998886
No 439
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.90 E-value=1.1 Score=41.90 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=29.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|--|...|..|++.|+ +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999998 59999973
No 440
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.81 E-value=1.5 Score=46.82 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||+|-.|.+.|..|...|.+|+|++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3789999999999999999999999999999864
No 441
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.40 E-value=1.5 Score=47.20 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (737)
++|+|||||..|.+.|+.|+..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 999999854
No 442
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.39 E-value=1.3 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (737)
++|+|||+|..||..|..|++.| ++|+.+|...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 68999999999999999999985 7799998754
No 443
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.18 E-value=1.6 Score=45.98 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3789999999999999999999995 69999974
No 444
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.11 E-value=1.2 Score=53.93 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
-.+|.|||||..|-.-|+.++.+|++|+++|.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 3679999999999999999999999999999864
No 445
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=83.03 E-value=0.74 Score=51.16 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.7
Q ss_pred cCCcccCceEEEEEecCCcEEEEECCeEEEecEEEEccChh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLG 296 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~~G~~i~AD~VI~AvP~~ 296 (737)
|++|++++.|++|+. ++|++...++++.++.+|.|+...
T Consensus 223 GV~v~l~~~Vt~v~~--~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 223 GVEVLLGTPVTEVTP--DGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCEEEcCCceEEECC--CcEEEccCCeeEecCEEEEcCCCc
Confidence 789999999999964 445544333369999999998654
No 446
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=82.98 E-value=1.2 Score=44.81 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+.|.|||||..|-..|...+..|+.|.|.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4789999999999999999999999999999864
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.34 E-value=1.7 Score=46.77 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHHCC--CcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (737)
+|+|||+|-.|.+.|+.|+..| .++.|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999999 4799999854
No 448
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.20 E-value=1.5 Score=49.94 Aligned_cols=32 Identities=38% Similarity=0.460 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 57999999999999999999999999999964
No 449
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=81.97 E-value=2.2 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=29.4
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCC--cEEEEccCC
Q 004684 48 LRVLVIGA-GLAGLAAARQLMRLGF--RVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGA-GiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (737)
++|+|||| |--|-+.|+.|...++ ++.+++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999975 699999863
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.77 E-value=1.8 Score=44.05 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.3
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVG-AGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|.||| +|.-|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999988653
No 451
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.76 E-value=1.9 Score=45.39 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
..+|+|+|+|-+|.+.|+.|++.|++|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 368999999999999999999999999999875
No 452
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.67 E-value=2.2 Score=38.27 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=27.9
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
|+|+|.|-.|...|..|.+.+.+|+++|...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999888999999975
No 453
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.51 E-value=2.2 Score=42.39 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=29.1
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGA-GLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGA-GiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+|+|| |-.|..+|..|++.|.+|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 78999997 999999999999999999999653
No 454
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.48 E-value=1.7 Score=48.92 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|.|||-|.+|.++|..|.+.|++|++.|.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999964
No 455
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.47 E-value=1.8 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~ 80 (737)
-.+|+|||||..|..-|..++ ++|++|+++|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 367999999999999999988 5899999999864
No 456
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=81.25 E-value=1.7 Score=46.22 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998753
No 457
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=81.20 E-value=1.8 Score=53.85 Aligned_cols=34 Identities=41% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
..+|+|||||..|+-||..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 3789999999999999999999999999998764
No 458
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.02 E-value=1.7 Score=49.28 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
--|+|||.|-+|+++|..|.+.|++|++.|..+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 569999999999999999999999999999754
No 459
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.91 E-value=2.4 Score=45.27 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc-EEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (737)
.+.|+|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36799999999999999999999997 99998753
No 460
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.91 E-value=2.2 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CcEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (737)
++.+|+|||||-.|-+.|+.|+..| .++.|+|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3579999999999999999999999 5899999754
No 461
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.87 E-value=2.2 Score=46.65 Aligned_cols=33 Identities=42% Similarity=0.680 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|--|-..|..|+++|+ +++|+|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3789999999999999999999999 79999983
No 462
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.85 E-value=2.1 Score=51.56 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~ 80 (737)
-.+|+|||||..|-.-|+.++ .+|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 468999999999999999998 8899999999854
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.74 E-value=2.2 Score=46.62 Aligned_cols=33 Identities=36% Similarity=0.643 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3789999999999999999999998 79999984
No 464
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=80.63 E-value=95 Score=34.11 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=32.0
Q ss_pred cCCcccCceEEEEEec-CCcEEEEE-CCeEEEecEEEEccChhh
Q 004684 256 NVPILYEKTVHTIRYG-SDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~-~~~V~V~~-~G~~i~AD~VI~AvP~~~ 297 (737)
++.++ .+.|+++..+ ++.+.|++ +|++++||.||.|.+...
T Consensus 99 gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 99 GVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 45564 6789999877 55677777 677999999999998764
No 465
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.24 E-value=2.2 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
...|+|||.|..|+.+|..|...|.+|+|+|...
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3799999999999999999999999999999754
No 466
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.13 E-value=2.8 Score=39.72 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (737)
.+|+|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 78999999999999999999996 7899998753
No 467
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=80.09 E-value=1.7 Score=49.58 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
+.++|+|||+|.+|+=.|..|++.+.+|+++.++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 3478999999999999999999999999998774
No 468
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.95 E-value=2.6 Score=43.11 Aligned_cols=32 Identities=34% Similarity=0.664 Sum_probs=29.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEc
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLE 77 (737)
+..+|+|||||-.++-=+..|.+.|.+|+|+=
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34789999999999999999999999999993
No 469
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.94 E-value=1.9 Score=48.23 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
++|.|||.|-+|+++|..|. .|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 36899999999999999999 99999999954
No 470
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=79.78 E-value=2.2 Score=51.00 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.6
Q ss_pred CcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhhhhh
Q 004684 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARAL 494 (737)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~~ 494 (737)
++||.+||.... +..+..|+..|..||..|.+.+.++.+
T Consensus 467 pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~~~ 505 (652)
T PRK12814 467 AGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGKPV 505 (652)
T ss_pred CCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 799999998863 456678999999999999999976544
No 471
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=79.75 E-value=2.7 Score=45.24 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=33.3
Q ss_pred cCCcccCceEEEEEecCCcEEEEE----CCe--EEEecEEEEccChhhh
Q 004684 256 NVPILYEKTVHTIRYGSDGVQVLA----GSQ--VFEGDMVLCTVPLGVL 298 (737)
Q Consensus 256 gl~I~lnt~V~~I~~~~~~V~V~~----~G~--~i~AD~VI~AvP~~~l 298 (737)
+++|+++++|++++.+++++.+.. +|+ +++||.||-|-..+-.
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 578999999999999998877655 343 7899999999876543
No 472
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.67 E-value=2 Score=45.99 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=28.3
Q ss_pred EEEECccHHHHHHHHHHHHCCC-cEEEEccCC
Q 004684 50 VLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (737)
|+|||||..|.+.|+.|+..|+ +|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999864
No 473
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.52 E-value=2.3 Score=48.04 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||-|-+|++++..|++.|++|++.|...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999754
No 474
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.38 E-value=2.9 Score=42.09 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||.|-.|..+|..|++.|+ +++|+|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4899999999999999999999998 69998873
No 475
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=79.36 E-value=1 Score=49.53 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC--------------CCcEEEEccCC
Q 004684 45 SNKLRVLVIGAGLAGLAAARQLMRL--------------GFRVTVLEGRK 80 (737)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~--------------G~~V~VLEa~~ 80 (737)
++--.++|||||++|.-.|.+|+.. -++|+++||.+
T Consensus 216 kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 216 KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 3445799999999999999999762 35799999965
No 476
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=79.25 E-value=2.8 Score=45.32 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC--cEEEEccCC
Q 004684 46 NKLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (737)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (737)
...+|+|||+|-.|-+.|+.|+..|. ++.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34799999999999999999999987 799999743
No 477
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.97 E-value=2.9 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--cEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (737)
+.+|+|||+|-.|-++|+.|+..|. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3799999999999999999999886 699999754
No 478
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=78.95 E-value=2.6 Score=48.27 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.8
Q ss_pred CcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhhhh
Q 004684 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARA 493 (737)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~ 493 (737)
++||.+||.+.. +..+..|+..|..||..|.+.+.+..
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 799999999863 34677899999999999999986543
No 479
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.85 E-value=3 Score=42.29 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEccC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (737)
.+|+|||+|-.|...|..|++.|+. ++|+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999999999985 9999874
No 480
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.75 E-value=4.8 Score=48.17 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=31.0
Q ss_pred CcEEEeccccccccCceeeHHHHHHHHHHHHHHHHHhh
Q 004684 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (737)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (737)
++||.+||.+.. +..+.-|+..|+.||..|.+.|+.
T Consensus 618 ~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 618 PKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 899999999863 456788999999999999998864
No 481
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.17 E-value=3.2 Score=40.76 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=28.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCc-EEEEccC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (737)
+|+|||+|-.|-..|..|++.|+. ++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999995 9999984
No 482
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=78.11 E-value=2.4 Score=39.88 Aligned_cols=31 Identities=45% Similarity=0.656 Sum_probs=27.4
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|+|||.-+.+.|..+...|++|+|+|-+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999864
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.04 E-value=2.7 Score=47.69 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|+|+|+|-.|...|..|.+.|++|+++|++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999865
No 484
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=77.91 E-value=2.8 Score=44.73 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998753
No 485
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=77.84 E-value=3.1 Score=44.02 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~ 79 (737)
..+|+|+|+|-+|.++|+.|++.| .+|+|+.++
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 368999999999999999999999 689999875
No 486
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.80 E-value=3.2 Score=43.02 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=29.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
..+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3789999999999999999999997 58888873
No 487
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=77.76 E-value=3 Score=48.00 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccCCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKR 81 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r 81 (737)
..+|+|||||..|+-+|..+.+.|. +|+|+|..++
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 3789999999999999988888875 6999987654
No 488
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.54 E-value=3.1 Score=43.25 Aligned_cols=33 Identities=36% Similarity=0.479 Sum_probs=29.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
+.+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3899999999999999999999998 58888873
No 489
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.54 E-value=3.1 Score=46.71 Aligned_cols=34 Identities=38% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
...|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3789999999999999999999999999999754
No 490
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.32 E-value=2.8 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
.+|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998753
No 491
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.29 E-value=2.8 Score=40.46 Aligned_cols=33 Identities=52% Similarity=0.564 Sum_probs=27.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+.|+|+|=|.-|-.+|..|...|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 789999999999999999999999999999854
No 492
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=77.05 E-value=2.7 Score=47.52 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|-+|+++|..|.+.|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999999999999999999999999754
No 493
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=76.84 E-value=3.1 Score=48.31 Aligned_cols=33 Identities=36% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+.|+|+|||=+|.++|+.|++.|.+|+|+.++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 368999999999999999999999999999764
No 494
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=76.50 E-value=3.5 Score=43.78 Aligned_cols=33 Identities=42% Similarity=0.527 Sum_probs=29.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
.++|+|||||=+|-++|+.|.+.|. +|+|+.++
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3689999999999999999999997 59999775
No 495
>PRK08328 hypothetical protein; Provisional
Probab=76.48 E-value=3.4 Score=42.52 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEcc
Q 004684 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (737)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa 78 (737)
.+|+|||+|=.|..+|..|++.|+ +++|+|.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 789999999999999999999998 4888876
No 496
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=76.47 E-value=3.2 Score=44.38 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|..|..-|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998754
No 497
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.36 E-value=4 Score=44.65 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.4
Q ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEcc
Q 004684 44 SSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (737)
Q Consensus 44 ~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (737)
++..++|.|||+|.-|.+.|..|++.| .|+++-+
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~ 37 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICARRG-PTLQWVR 37 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeC
Confidence 344578999999999999999999999 6776643
No 498
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=75.59 E-value=3.4 Score=45.79 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.3
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEccC
Q 004684 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEGR 79 (737)
Q Consensus 48 ~dVvIVG-AGiAGLsAA~~Lak~G~~V~VLEa~ 79 (737)
.+|+||| .|.-|-+-|..|.++|++|++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 7899999 8999999999999999999999974
No 499
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=75.41 E-value=4 Score=43.36 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEccC
Q 004684 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (737)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (737)
.++|+|+|||=+|-++|+.|++.|. +++|+.++
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3689999999999999999999997 59999875
No 500
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.41 E-value=3.6 Score=44.05 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEccCC
Q 004684 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (737)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (737)
+|.|||.|..|..-|..|.++|++|+|++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999998863
Done!