Query 004685
Match_columns 737
No_of_seqs 361 out of 2677
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 02:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.5E-42 5E-47 376.0 37.0 210 41-311 99-328 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 1.4E-41 4.9E-46 352.7 39.6 215 39-311 2-218 (304)
3 1nr0_A Actin interacting prote 100.0 5.3E-42 1.8E-46 391.4 38.8 232 27-315 38-275 (611)
4 1got_B GT-beta; complex (GTP-b 100.0 1.7E-41 5.9E-46 358.1 38.9 214 40-311 45-258 (340)
5 3iz6_a 40S ribosomal protein R 100.0 6.9E-42 2.4E-46 367.0 35.3 228 38-312 54-282 (380)
6 3ow8_A WD repeat-containing pr 100.0 2.3E-41 7.9E-46 353.8 36.6 209 42-311 24-238 (321)
7 1nr0_A Actin interacting prote 100.0 3E-41 1E-45 385.1 37.6 287 28-335 129-505 (611)
8 2pbi_B Guanine nucleotide-bind 100.0 1.6E-40 5.3E-45 352.6 39.6 218 40-311 54-272 (354)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.7E-41 1.6E-45 355.4 35.2 219 39-310 4-225 (345)
10 4ery_A WD repeat-containing pr 100.0 4.8E-40 1.6E-44 342.6 41.9 213 39-311 12-224 (312)
11 4g56_B MGC81050 protein; prote 100.0 5.9E-41 2E-45 356.2 34.9 211 46-310 38-258 (357)
12 4gqb_B Methylosome protein 50; 100.0 1.2E-40 4E-45 351.3 34.3 209 47-311 27-247 (344)
13 2ymu_A WD-40 repeat protein; u 100.0 7E-40 2.4E-44 371.8 39.7 356 24-715 198-553 (577)
14 2ymu_A WD-40 repeat protein; u 100.0 1.8E-39 6.3E-44 368.3 38.8 241 24-333 239-479 (577)
15 1erj_A Transcriptional repress 100.0 4.2E-39 1.4E-43 347.0 35.9 209 48-311 62-288 (393)
16 3frx_A Guanine nucleotide-bind 100.0 7.6E-39 2.6E-43 334.6 36.6 212 39-311 6-228 (319)
17 2hes_X YDR267CP; beta-propelle 100.0 2.3E-38 7.8E-43 332.6 36.1 222 38-310 2-230 (330)
18 2xzm_R RACK1; ribosome, transl 100.0 4.8E-38 1.6E-42 332.2 36.7 213 39-310 10-244 (343)
19 3sfz_A APAF-1, apoptotic pepti 100.0 8E-40 2.7E-44 405.0 26.9 473 24-715 633-1182(1249)
20 4aow_A Guanine nucleotide-bind 100.0 3.1E-37 1.1E-41 324.8 39.1 223 30-311 18-247 (340)
21 1r5m_A SIR4-interacting protei 100.0 9E-37 3.1E-41 331.4 33.4 236 47-332 42-300 (425)
22 2pm9_A Protein WEB1, protein t 100.0 3.3E-37 1.1E-41 334.4 29.5 244 25-311 42-295 (416)
23 1pgu_A Actin interacting prote 100.0 6.7E-37 2.3E-41 349.7 32.2 233 27-319 38-292 (615)
24 4e54_B DNA damage-binding prot 100.0 9.4E-37 3.2E-41 333.3 31.9 220 39-313 108-330 (435)
25 3ei3_B DNA damage-binding prot 100.0 2.5E-36 8.4E-41 324.1 34.2 223 37-313 60-285 (383)
26 3zwl_B Eukaryotic translation 100.0 3.8E-35 1.3E-39 312.1 40.3 223 40-311 22-250 (369)
27 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-36 5.8E-41 358.8 32.0 232 47-314 14-246 (902)
28 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-36 2.9E-40 368.9 38.1 261 41-342 606-903 (1249)
29 2ynn_A Coatomer subunit beta'; 100.0 1.2E-35 4E-40 308.1 32.8 168 84-311 5-173 (304)
30 1sq9_A Antiviral protein SKI8; 100.0 1.2E-35 4.2E-40 320.0 34.0 231 41-312 7-269 (397)
31 3odt_A Protein DOA1; ubiquitin 100.0 4E-35 1.4E-39 304.6 36.7 210 38-311 6-215 (313)
32 3gre_A Serine/threonine-protei 100.0 2.3E-36 7.8E-41 330.5 28.0 245 38-331 50-313 (437)
33 3ow8_A WD repeat-containing pr 100.0 6.3E-36 2.1E-40 312.5 30.1 267 86-715 26-294 (321)
34 1vyh_C Platelet-activating fac 100.0 2E-35 6.8E-40 320.0 34.6 186 86-332 102-287 (410)
35 3k26_A Polycomb protein EED; W 100.0 4.9E-35 1.7E-39 311.0 35.0 231 45-311 13-261 (366)
36 3i2n_A WD repeat-containing pr 100.0 1.7E-35 6E-40 313.5 31.3 214 43-310 11-243 (357)
37 3dm0_A Maltose-binding peripla 100.0 5.5E-35 1.9E-39 338.9 37.6 215 40-311 372-593 (694)
38 2pm9_A Protein WEB1, protein t 100.0 7.2E-36 2.4E-40 323.9 27.6 221 50-311 12-250 (416)
39 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-35 8.3E-40 314.5 30.8 224 46-311 4-234 (372)
40 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-36 1.7E-40 354.8 28.0 300 21-340 72-507 (902)
41 1gxr_A ESG1, transducin-like e 100.0 1.3E-34 4.5E-39 304.0 35.7 207 45-311 46-256 (337)
42 4a11_B DNA excision repair pro 100.0 3E-34 1E-38 309.8 37.6 242 26-312 21-278 (408)
43 1pgu_A Actin interacting prote 100.0 2.8E-35 9.7E-40 336.2 29.6 249 23-332 83-349 (615)
44 4gga_A P55CDC, cell division c 100.0 1.3E-33 4.5E-38 306.9 36.5 201 52-311 107-311 (420)
45 1got_B GT-beta; complex (GTP-b 100.0 1.2E-33 4.1E-38 298.0 34.4 171 83-311 46-216 (340)
46 4gqb_B Methylosome protein 50; 100.0 9E-34 3.1E-38 298.6 32.6 206 48-310 80-289 (344)
47 4ggc_A P55CDC, cell division c 100.0 3.4E-33 1.2E-37 290.9 36.6 201 52-311 27-231 (318)
48 2pm7_B Protein transport prote 100.0 2.1E-33 7.4E-38 290.0 34.7 186 43-311 2-190 (297)
49 3iz6_a 40S ribosomal protein R 100.0 2.2E-34 7.5E-39 308.6 28.0 190 73-310 47-237 (380)
50 3vl1_A 26S proteasome regulato 100.0 3.7E-33 1.3E-37 303.1 37.0 247 24-311 74-323 (420)
51 4h5i_A Guanine nucleotide-exch 100.0 6.9E-34 2.4E-38 302.6 30.1 207 50-310 14-254 (365)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-33 8.1E-38 307.4 34.8 209 40-319 108-317 (445)
53 3v7d_B Cell division control p 100.0 5E-33 1.7E-37 306.5 37.5 229 41-311 112-342 (464)
54 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-34 3.9E-39 321.2 23.4 231 21-310 176-428 (524)
55 3mkq_A Coatomer beta'-subunit; 100.0 4.3E-33 1.5E-37 329.4 38.0 213 40-310 3-217 (814)
56 4aez_A CDC20, WD repeat-contai 100.0 4.3E-33 1.5E-37 300.9 34.4 204 45-311 86-294 (401)
57 3dwl_C Actin-related protein 2 100.0 2.3E-34 7.7E-39 308.0 24.0 228 46-311 7-237 (377)
58 1yfq_A Cell cycle arrest prote 100.0 7.5E-33 2.6E-37 291.6 32.0 204 44-311 5-226 (342)
59 3mkq_A Coatomer beta'-subunit; 100.0 5E-34 1.7E-38 337.4 25.7 252 24-335 31-284 (814)
60 3vl1_A 26S proteasome regulato 100.0 1.1E-33 3.6E-38 307.4 25.1 219 52-311 58-279 (420)
61 3bg1_A Protein SEC13 homolog; 100.0 1.8E-33 6.3E-38 293.3 25.1 152 44-226 7-161 (316)
62 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.9E-33 2.7E-37 292.3 30.1 175 83-310 6-181 (345)
63 3dw8_B Serine/threonine-protei 100.0 2.9E-32 9.8E-37 298.6 35.5 233 48-310 26-315 (447)
64 2pbi_B Guanine nucleotide-bind 100.0 1.9E-32 6.5E-37 290.4 32.9 174 83-311 55-230 (354)
65 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-32 8E-37 298.5 34.2 198 46-311 129-326 (435)
66 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-32 5.7E-37 288.7 31.8 236 43-311 4-250 (351)
67 4g56_B MGC81050 protein; prote 100.0 3.3E-33 1.1E-37 296.5 26.3 198 55-311 10-214 (357)
68 3mmy_A MRNA export factor; mRN 100.0 2E-32 6.7E-37 291.0 32.4 212 37-311 26-248 (368)
69 3frx_A Guanine nucleotide-bind 100.0 1.5E-32 5E-37 286.9 30.3 228 20-310 32-267 (319)
70 1gxr_A ESG1, transducin-like e 100.0 2.8E-32 9.6E-37 286.2 31.8 206 49-311 8-215 (337)
71 1erj_A Transcriptional repress 100.0 1.6E-32 5.5E-37 295.5 29.4 160 91-312 62-240 (393)
72 3v7d_B Cell division control p 100.0 3E-31 1E-35 292.3 37.9 234 22-311 136-382 (464)
73 2hes_X YDR267CP; beta-propelle 100.0 8.9E-32 3E-36 282.4 29.4 245 20-310 26-280 (330)
74 4ery_A WD repeat-containing pr 100.0 4.6E-31 1.6E-35 274.5 33.4 168 83-311 14-181 (312)
75 2xzm_R RACK1; ribosome, transl 100.0 1.7E-31 5.8E-36 281.9 29.8 232 20-312 41-287 (343)
76 4gga_A P55CDC, cell division c 100.0 4.9E-31 1.7E-35 286.6 33.1 229 25-311 122-354 (420)
77 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-32 4.9E-37 304.4 20.9 216 49-311 132-387 (524)
78 3jrp_A Fusion protein of prote 100.0 5.6E-31 1.9E-35 281.1 29.5 132 41-181 2-136 (379)
79 3gre_A Serine/threonine-protei 100.0 3.5E-31 1.2E-35 289.4 26.3 206 57-311 34-246 (437)
80 4aez_A CDC20, WD repeat-contai 100.0 4.4E-30 1.5E-34 277.3 32.6 224 24-311 109-337 (401)
81 1r5m_A SIR4-interacting protei 100.0 9.2E-31 3.2E-35 283.9 25.9 224 72-333 25-259 (425)
82 2xyi_A Probable histone-bindin 100.0 1.7E-29 5.9E-34 275.2 33.3 220 51-310 46-309 (430)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-30 6E-35 280.5 24.6 209 52-311 36-255 (402)
84 3ei3_B DNA damage-binding prot 100.0 1.1E-29 3.8E-34 272.2 28.2 179 76-311 57-237 (383)
85 4aow_A Guanine nucleotide-bind 100.0 6.5E-29 2.2E-33 261.1 32.0 178 80-311 26-205 (340)
86 4e54_B DNA damage-binding prot 100.0 2.4E-29 8.3E-34 274.5 29.0 167 90-311 116-283 (435)
87 3dm0_A Maltose-binding peripla 100.0 3.4E-29 1.2E-33 290.3 30.7 234 20-312 397-634 (694)
88 1yfq_A Cell cycle arrest prote 100.0 4.1E-29 1.4E-33 262.9 28.2 159 90-310 8-179 (342)
89 4ggc_A P55CDC, cell division c 100.0 1.8E-28 6.2E-33 255.0 32.4 227 25-311 42-274 (318)
90 1sq9_A Antiviral protein SKI8; 100.0 4.7E-29 1.6E-33 268.4 28.9 183 90-311 13-217 (397)
91 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-29 1.1E-33 270.3 25.1 199 48-310 13-211 (588)
92 4a11_B DNA excision repair pro 100.0 4.4E-28 1.5E-32 261.4 34.3 252 22-311 60-324 (408)
93 3jro_A Fusion protein of prote 100.0 3E-29 1E-33 292.6 26.5 130 43-181 2-134 (753)
94 3odt_A Protein DOA1; ubiquitin 100.0 3E-28 1E-32 252.7 31.1 162 83-307 9-171 (313)
95 3zwl_B Eukaryotic translation 100.0 5.6E-28 1.9E-32 256.6 33.8 177 85-310 25-206 (369)
96 2pm7_B Protein transport prote 100.0 2E-28 6.8E-33 252.7 29.3 244 21-310 24-285 (297)
97 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-28 4.8E-33 262.0 29.1 170 90-311 5-174 (372)
98 4gq1_A NUP37; propeller, trans 100.0 5.6E-29 1.9E-33 267.6 25.3 114 57-182 96-221 (393)
99 3i2n_A WD repeat-containing pr 100.0 1.2E-28 4E-33 260.9 27.0 229 27-312 43-293 (357)
100 3vu4_A KMHSV2; beta-propeller 100.0 5E-28 1.7E-32 256.4 30.7 216 39-311 8-228 (355)
101 3dwl_C Actin-related protein 2 100.0 1.1E-28 3.7E-33 263.8 25.4 247 22-310 27-281 (377)
102 3k26_A Polycomb protein EED; W 100.0 9.9E-29 3.4E-33 262.3 24.9 259 26-311 42-319 (366)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-27 7.4E-32 260.3 35.3 208 51-312 5-273 (450)
104 3dw8_B Serine/threonine-protei 100.0 4.9E-28 1.7E-32 264.9 25.4 204 91-312 26-260 (447)
105 3bws_A Protein LP49; two-domai 100.0 5.4E-27 1.8E-31 255.6 31.9 224 27-312 98-336 (433)
106 2w18_A PALB2, fancn, partner a 100.0 3.8E-27 1.3E-31 238.8 27.4 219 40-311 25-270 (356)
107 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-27 9.7E-32 259.0 28.8 177 84-329 110-287 (445)
108 3bg1_A Protein SEC13 homolog; 100.0 1.1E-27 3.8E-32 249.4 23.3 244 21-311 28-294 (316)
109 1p22_A F-BOX/WD-repeat protein 100.0 6.3E-27 2.1E-31 255.5 28.6 218 24-311 149-366 (435)
110 3mmy_A MRNA export factor; mRN 100.0 3.6E-27 1.2E-31 250.3 24.4 174 77-311 24-200 (368)
111 1l0q_A Surface layer protein; 100.0 2.7E-26 9.3E-31 246.4 31.2 186 63-311 3-190 (391)
112 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-27 9.2E-32 249.7 21.4 199 57-311 43-245 (343)
113 1l0q_A Surface layer protein; 99.9 9.5E-26 3.2E-30 242.2 32.2 224 22-311 6-234 (391)
114 2aq5_A Coronin-1A; WD40 repeat 99.9 3.5E-26 1.2E-30 246.7 28.6 256 23-337 52-329 (402)
115 2j04_A TAU60, YPL007P, hypothe 99.9 4.6E-27 1.6E-31 253.5 20.9 240 22-332 31-278 (588)
116 3jrp_A Fusion protein of prote 99.9 5.2E-26 1.8E-30 242.5 29.0 244 23-312 28-289 (379)
117 3vu4_A KMHSV2; beta-propeller 99.9 5.1E-26 1.7E-30 241.0 26.7 83 616-702 188-273 (355)
118 4h5i_A Guanine nucleotide-exch 99.9 4.6E-26 1.6E-30 242.1 24.5 231 25-311 101-344 (365)
119 2xyi_A Probable histone-bindin 99.9 4.9E-25 1.7E-29 240.0 28.2 248 22-310 145-410 (430)
120 3f3f_A Nucleoporin SEH1; struc 99.9 6.7E-25 2.3E-29 230.4 28.1 268 22-314 27-341 (351)
121 1nir_A Nitrite reductase; hemo 99.9 3E-24 1E-28 239.5 32.9 229 22-310 153-402 (543)
122 3jro_A Fusion protein of prote 99.9 1.1E-24 3.9E-29 253.9 25.7 245 22-312 25-287 (753)
123 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-23 4.4E-28 230.3 29.0 251 48-332 100-365 (450)
124 4gq1_A NUP37; propeller, trans 99.9 1E-24 3.6E-29 234.3 19.1 258 21-309 104-388 (393)
125 3bws_A Protein LP49; two-domai 99.9 4E-23 1.4E-27 224.9 31.6 206 49-311 59-293 (433)
126 3lrv_A PRE-mRNA-splicing facto 99.9 7.8E-24 2.7E-28 223.1 24.1 243 21-331 51-309 (343)
127 2w18_A PALB2, fancn, partner a 99.9 1.3E-23 4.3E-28 213.1 23.9 228 26-308 61-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.7E-23 1.3E-27 223.6 24.8 200 50-311 62-301 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-22 8.5E-27 217.1 26.6 222 26-311 91-345 (415)
130 1nir_A Nitrite reductase; hemo 99.9 1.3E-21 4.6E-26 218.1 30.3 205 57-312 144-357 (543)
131 1k32_A Tricorn protease; prote 99.9 2.6E-21 8.8E-26 234.2 28.3 237 28-312 33-328 (1045)
132 2ecf_A Dipeptidyl peptidase IV 99.9 3E-20 1E-24 217.0 33.0 219 50-312 36-323 (741)
133 1ri6_A Putative isomerase YBHE 99.8 3.6E-19 1.2E-23 186.7 28.2 196 64-310 7-209 (343)
134 1k32_A Tricorn protease; prote 99.8 1.9E-19 6.4E-24 217.9 28.1 249 28-335 80-392 (1045)
135 3u4y_A Uncharacterized protein 99.8 1.5E-18 5.1E-23 181.3 31.1 198 57-311 4-208 (331)
136 1pby_B Quinohemoprotein amine 99.8 2.4E-19 8.1E-24 187.5 24.1 175 63-301 2-195 (337)
137 2ojh_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 181.5 24.6 182 67-310 17-204 (297)
138 2z3z_A Dipeptidyl aminopeptida 99.8 4.2E-19 1.4E-23 206.0 27.7 201 51-309 82-341 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.8 2.3E-19 7.7E-24 208.9 23.8 224 52-312 18-291 (723)
140 2ojh_A Uncharacterized protein 99.8 7.8E-19 2.7E-23 179.5 24.2 257 19-338 13-288 (297)
141 3vgz_A Uncharacterized protein 99.8 9.1E-18 3.1E-22 176.8 32.6 206 49-311 39-263 (353)
142 2ecf_A Dipeptidyl peptidase IV 99.8 5.7E-19 1.9E-23 206.1 24.6 198 52-310 110-367 (741)
143 1ri6_A Putative isomerase YBHE 99.8 8.6E-18 2.9E-22 176.0 28.5 241 23-310 10-262 (343)
144 3hfq_A Uncharacterized protein 99.8 3.3E-17 1.1E-21 172.5 31.7 197 71-310 15-218 (347)
145 2z3z_A Dipeptidyl aminopeptida 99.8 4.5E-18 1.5E-22 197.4 26.9 219 38-311 15-294 (706)
146 3u4y_A Uncharacterized protein 99.8 3.9E-17 1.3E-21 170.5 30.6 230 23-312 15-254 (331)
147 3o4h_A Acylamino-acid-releasin 99.8 1.1E-17 3.7E-22 189.4 27.1 197 50-312 21-229 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.8 6E-18 2E-22 196.9 23.7 239 25-301 34-329 (723)
149 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-17 5.5E-22 174.5 23.6 160 55-254 4-182 (349)
150 3scy_A Hypothetical bacterial 99.7 6.5E-16 2.2E-20 163.5 29.8 215 61-311 12-243 (361)
151 1z68_A Fibroblast activation p 99.7 4.6E-17 1.6E-21 189.2 22.2 222 55-314 20-295 (719)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 1.6E-17 5.4E-22 180.1 16.9 219 49-311 35-279 (434)
153 3pe7_A Oligogalacturonate lyas 99.7 1.8E-16 6.1E-21 169.4 24.6 213 39-312 19-275 (388)
154 3hfq_A Uncharacterized protein 99.7 7.5E-16 2.6E-20 162.0 28.4 238 27-310 15-271 (347)
155 3o4h_A Acylamino-acid-releasin 99.7 8.1E-17 2.8E-21 182.3 19.2 77 621-704 192-278 (582)
156 3scy_A Hypothetical bacterial 99.7 1E-14 3.5E-19 154.2 33.9 245 26-310 25-291 (361)
157 1pby_B Quinohemoprotein amine 99.7 7E-16 2.4E-20 161.0 22.1 248 25-316 8-316 (337)
158 3vgz_A Uncharacterized protein 99.7 2.3E-15 7.8E-20 158.3 26.1 249 27-338 68-330 (353)
159 2oit_A Nucleoporin 214KDA; NH2 99.7 8.6E-16 3E-20 166.4 21.2 219 49-309 91-332 (434)
160 1jmx_B Amine dehydrogenase; ox 99.6 6.9E-15 2.4E-19 154.3 21.2 250 23-314 16-329 (349)
161 3c5m_A Oligogalacturonate lyas 99.6 2.1E-15 7.3E-20 161.3 17.4 199 53-311 38-274 (396)
162 3azo_A Aminopeptidase; POP fam 99.6 7.1E-14 2.4E-18 160.6 27.3 205 45-310 18-274 (662)
163 2oiz_A Aromatic amine dehydrog 99.6 3.6E-13 1.2E-17 142.1 29.6 185 26-248 29-231 (361)
164 4a5s_A Dipeptidyl peptidase 4 99.6 1.1E-13 3.8E-18 161.0 28.1 112 52-181 18-143 (740)
165 1jof_A Carboxy-CIS,CIS-muconat 99.6 6.3E-14 2.2E-18 148.5 22.5 195 64-310 4-224 (365)
166 2oiz_A Aromatic amine dehydrog 99.6 3.1E-13 1.1E-17 142.6 26.8 193 61-311 14-231 (361)
167 1z68_A Fibroblast activation p 99.6 1.1E-14 3.8E-19 169.1 15.5 158 98-308 20-198 (719)
168 1q7f_A NHL, brain tumor CG1071 99.5 4.4E-12 1.5E-16 129.1 28.0 160 91-309 27-193 (286)
169 3fvz_A Peptidyl-glycine alpha- 99.5 2.7E-12 9.4E-17 133.6 24.6 180 93-312 23-229 (329)
170 2dg1_A DRP35, lactonase; beta 99.5 5.5E-12 1.9E-16 131.4 25.2 197 51-310 6-213 (333)
171 1qks_A Cytochrome CD1 nitrite 99.5 1.9E-11 6.6E-16 135.7 30.4 206 60-313 165-376 (567)
172 3fvz_A Peptidyl-glycine alpha- 99.5 7.3E-12 2.5E-16 130.4 23.9 238 50-333 23-303 (329)
173 2gop_A Trilobed protease; beta 99.5 5E-12 1.7E-16 132.5 22.6 73 635-715 271-344 (347)
174 3azo_A Aminopeptidase; POP fam 99.5 4E-12 1.4E-16 146.0 23.6 86 622-713 240-337 (662)
175 1jof_A Carboxy-CIS,CIS-muconat 99.5 3.7E-12 1.2E-16 134.8 21.4 245 49-338 38-326 (365)
176 2z2n_A Virginiamycin B lyase; 99.4 6.5E-10 2.2E-14 113.3 34.5 202 46-308 10-211 (299)
177 3pe7_A Oligogalacturonate lyas 99.4 1.9E-11 6.6E-16 130.1 23.7 252 31-339 61-368 (388)
178 2xdw_A Prolyl endopeptidase; a 99.4 4.3E-11 1.5E-15 138.5 27.5 69 635-703 343-417 (710)
179 2dg1_A DRP35, lactonase; beta 99.4 1.3E-10 4.3E-15 121.1 25.8 250 26-335 25-293 (333)
180 4a5s_A Dipeptidyl peptidase 4 99.4 1.6E-11 5.3E-16 142.8 20.7 261 27-316 35-359 (740)
181 1q7f_A NHL, brain tumor CG1071 99.4 1.3E-10 4.5E-15 118.0 25.3 221 26-310 49-280 (286)
182 2bkl_A Prolyl endopeptidase; m 99.3 5.1E-11 1.7E-15 137.5 23.4 74 635-710 327-406 (695)
183 3e5z_A Putative gluconolactona 99.3 3E-10 1E-14 116.1 26.7 160 90-309 24-201 (296)
184 2bkl_A Prolyl endopeptidase; m 99.3 4.2E-11 1.4E-15 138.1 19.6 203 48-309 118-348 (695)
185 3dsm_A Uncharacterized protein 99.3 2E-10 7E-15 119.3 22.6 183 70-311 15-213 (328)
186 2mad_H Methylamine dehydrogena 99.3 7.1E-09 2.4E-13 109.3 33.5 193 58-311 28-244 (373)
187 3c5m_A Oligogalacturonate lyas 99.3 5.7E-11 1.9E-15 126.7 16.6 223 53-339 83-368 (396)
188 3e5z_A Putative gluconolactona 99.3 4.9E-10 1.7E-14 114.4 23.0 233 41-336 18-271 (296)
189 2xdw_A Prolyl endopeptidase; a 99.2 4.5E-10 1.5E-14 129.9 23.7 234 48-337 122-395 (710)
190 2qc5_A Streptogramin B lactona 99.2 4.2E-08 1.4E-12 99.8 32.6 201 47-308 16-216 (300)
191 2gop_A Trilobed protease; beta 99.2 9.1E-10 3.1E-14 115.1 20.1 205 51-331 59-311 (347)
192 1yr2_A Prolyl oligopeptidase; 99.1 2.2E-09 7.6E-14 124.6 23.5 65 638-702 373-443 (741)
193 1rwi_B Serine/threonine-protei 99.1 4.3E-09 1.5E-13 105.6 22.2 202 49-312 65-266 (270)
194 2mad_H Methylamine dehydrogena 99.1 1.5E-08 5.2E-13 106.7 27.0 253 29-326 48-366 (373)
195 1rwi_B Serine/threonine-protei 99.1 6.1E-09 2.1E-13 104.5 22.8 219 52-333 25-245 (270)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 7.2E-09 2.5E-13 106.5 23.7 67 635-701 233-300 (314)
197 3dsm_A Uncharacterized protein 99.1 1.2E-08 4.2E-13 105.8 25.2 240 27-332 63-322 (328)
198 1xip_A Nucleoporin NUP159; bet 99.1 4.7E-10 1.6E-14 117.4 13.9 179 52-297 39-231 (388)
199 1qks_A Cytochrome CD1 nitrite 99.1 1.7E-08 5.9E-13 112.0 26.6 225 27-310 176-421 (567)
200 3no2_A Uncharacterized protein 99.1 7.8E-09 2.7E-13 104.2 20.2 195 61-316 4-201 (276)
201 3no2_A Uncharacterized protein 99.1 1.2E-08 4E-13 102.9 21.2 228 24-313 11-254 (276)
202 3sjl_D Methylamine dehydrogena 99.1 7.5E-08 2.6E-12 100.3 27.7 194 56-311 38-257 (386)
203 3c75_H MADH, methylamine dehyd 99.0 6E-08 2.1E-12 102.9 25.9 191 60-311 82-296 (426)
204 2qe8_A Uncharacterized protein 99.0 4.1E-08 1.4E-12 102.5 23.5 183 51-307 17-223 (343)
205 3g4e_A Regucalcin; six bladed 99.0 3.3E-07 1.1E-11 93.4 29.3 55 635-689 206-262 (297)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 5.7E-08 1.9E-12 99.7 23.6 234 47-334 14-280 (314)
207 3sjl_D Methylamine dehydrogena 99.0 2.2E-07 7.5E-12 96.8 26.7 262 28-332 59-384 (386)
208 2z2n_A Virginiamycin B lyase; 98.9 3.6E-07 1.2E-11 92.7 27.1 199 49-309 55-254 (299)
209 3hrp_A Uncharacterized protein 98.9 1.7E-07 5.9E-12 100.1 25.5 217 51-312 131-356 (409)
210 3hrp_A Uncharacterized protein 98.9 4E-07 1.4E-11 97.2 27.8 164 94-310 131-298 (409)
211 3c75_H MADH, methylamine dehyd 98.9 5.6E-08 1.9E-12 103.1 20.6 256 28-325 99-417 (426)
212 3g4e_A Regucalcin; six bladed 98.9 3.6E-07 1.2E-11 93.1 24.8 234 46-336 8-256 (297)
213 2qc5_A Streptogramin B lactona 98.8 1.4E-06 4.7E-11 88.3 27.2 201 48-309 59-259 (300)
214 1mda_H Methylamine dehydrogena 98.8 1.1E-07 3.6E-12 99.3 18.1 257 29-331 47-366 (368)
215 1xip_A Nucleoporin NUP159; bet 98.8 2.6E-08 9E-13 104.1 13.5 176 95-334 39-226 (388)
216 3iuj_A Prolyl endopeptidase; h 98.8 8.5E-08 2.9E-12 110.2 18.9 233 48-337 126-386 (693)
217 1yr2_A Prolyl oligopeptidase; 98.8 1.3E-07 4.4E-12 109.8 20.3 231 49-337 161-422 (741)
218 2ghs_A AGR_C_1268P; regucalcin 98.8 1.5E-06 5.2E-11 89.8 25.5 223 52-335 50-285 (326)
219 1mda_H Methylamine dehydrogena 98.8 4.4E-07 1.5E-11 94.6 20.2 79 635-714 271-360 (368)
220 3iuj_A Prolyl endopeptidase; h 98.7 1.1E-06 3.6E-11 101.1 23.4 68 635-703 333-408 (693)
221 3dr2_A Exported gluconolactona 98.7 4.7E-06 1.6E-10 85.1 24.4 159 91-310 42-224 (305)
222 2hz6_A Endoplasmic reticulum t 98.6 8.7E-09 3E-13 108.7 3.3 183 61-313 8-195 (369)
223 1yiq_A Quinohemoprotein alcoho 98.6 6E-06 2E-10 94.3 26.1 54 635-688 482-537 (689)
224 3dr2_A Exported gluconolactona 98.6 1.5E-06 5E-11 88.9 18.8 230 42-335 36-290 (305)
225 2ghs_A AGR_C_1268P; regucalcin 98.6 9.5E-06 3.2E-10 83.7 24.3 193 50-300 89-292 (326)
226 1kb0_A Quinohemoprotein alcoho 98.4 1.4E-05 4.9E-10 91.0 23.0 63 647-710 455-517 (677)
227 2iwa_A Glutamine cyclotransfer 98.4 2.5E-05 8.7E-10 76.8 21.4 225 40-311 9-238 (266)
228 1kb0_A Quinohemoprotein alcoho 98.4 2.5E-05 8.5E-10 88.9 24.6 65 635-699 484-566 (677)
229 1npe_A Nidogen, entactin; glyc 98.4 8.8E-05 3E-09 73.8 25.5 221 51-332 36-261 (267)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00021 7.1E-09 75.1 29.5 106 61-182 52-165 (376)
231 2qe8_A Uncharacterized protein 98.3 1.4E-05 4.7E-10 83.2 18.4 222 48-332 64-301 (343)
232 1yiq_A Quinohemoprotein alcoho 98.3 2.4E-05 8.2E-10 89.3 21.5 61 648-709 454-514 (689)
233 2ece_A 462AA long hypothetical 98.2 8.4E-05 2.9E-09 77.9 20.9 212 60-311 93-353 (462)
234 2hz6_A Endoplasmic reticulum t 98.2 1.4E-06 4.6E-11 91.8 7.3 143 107-312 9-151 (369)
235 3nol_A Glutamine cyclotransfer 98.2 9.4E-05 3.2E-09 71.8 18.2 209 40-300 31-245 (262)
236 3hxj_A Pyrrolo-quinoline quino 98.2 1.9E-05 6.5E-10 81.2 14.4 66 635-703 262-327 (330)
237 3qqz_A Putative uncharacterize 98.1 0.0009 3.1E-08 65.3 24.2 231 44-309 20-252 (255)
238 2ece_A 462AA long hypothetical 98.1 0.00016 5.5E-09 75.8 19.3 254 15-298 93-399 (462)
239 3nok_A Glutaminyl cyclase; bet 98.0 0.00015 5.1E-09 70.4 16.5 210 40-299 43-254 (268)
240 2p4o_A Hypothetical protein; p 98.0 0.0018 6.2E-08 65.7 25.7 245 40-338 22-274 (306)
241 3v64_C Agrin; beta propeller, 98.0 0.0072 2.4E-07 62.5 30.5 224 51-333 73-299 (349)
242 3mbr_X Glutamine cyclotransfer 98.0 0.00075 2.6E-08 64.9 20.7 211 40-299 9-223 (243)
243 3v65_B Low-density lipoprotein 97.9 0.0049 1.7E-07 64.7 27.8 225 51-334 116-343 (386)
244 1npe_A Nidogen, entactin; glyc 97.9 0.0021 7.2E-08 63.6 22.9 190 63-310 2-198 (267)
245 1ijq_A LDL receptor, low-densi 97.9 0.012 3.9E-07 60.0 28.4 226 51-333 30-262 (316)
246 1fwx_A Nitrous oxide reductase 97.9 0.00019 6.5E-09 78.0 15.4 190 27-247 111-361 (595)
247 4a2l_A BT_4663, two-component 97.8 0.04 1.4E-06 64.0 35.0 213 53-311 175-387 (795)
248 3v64_C Agrin; beta propeller, 97.7 0.017 5.8E-07 59.7 27.7 199 51-310 34-234 (349)
249 1kv9_A Type II quinohemoprotei 97.7 0.0057 2E-07 69.3 25.8 65 644-709 433-497 (668)
250 1kv9_A Type II quinohemoprotei 97.7 0.0053 1.8E-07 69.6 25.5 54 635-688 465-520 (668)
251 4a2l_A BT_4663, two-component 97.7 0.13 4.4E-06 59.7 37.0 217 50-312 214-438 (795)
252 3p5b_L Low density lipoprotein 97.6 0.048 1.7E-06 57.4 29.4 228 49-333 110-344 (400)
253 2iwa_A Glutamine cyclotransfer 97.6 0.0015 5.1E-08 64.2 15.9 194 83-336 10-220 (266)
254 1fwx_A Nitrous oxide reductase 97.6 0.00021 7.2E-09 77.6 10.6 222 60-310 99-361 (595)
255 3nol_A Glutamine cyclotransfer 97.6 0.0018 6.1E-08 62.9 15.9 189 83-334 32-237 (262)
256 3hxj_A Pyrrolo-quinoline quino 97.5 0.0015 5.1E-08 66.8 16.0 179 62-312 107-285 (330)
257 3sov_A LRP-6, low-density lipo 97.5 0.038 1.3E-06 56.1 26.1 224 52-333 36-262 (318)
258 3v65_B Low-density lipoprotein 97.5 0.017 6E-07 60.5 23.9 197 53-310 79-277 (386)
259 2ad6_A Methanol dehydrogenase 97.5 0.049 1.7E-06 60.3 28.2 65 636-700 472-542 (571)
260 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.025 8.6E-07 58.9 23.8 207 61-314 102-341 (376)
261 2fp8_A Strictosidine synthase; 97.4 0.013 4.4E-07 59.7 20.9 201 52-311 81-314 (322)
262 3nok_A Glutaminyl cyclase; bet 97.4 0.006 2E-07 59.2 16.7 188 83-334 44-247 (268)
263 2fp8_A Strictosidine synthase; 97.4 0.0092 3.1E-07 60.8 19.5 201 51-309 19-268 (322)
264 3m0c_C LDL receptor, low-densi 97.4 0.089 3E-06 60.3 29.2 226 50-334 423-657 (791)
265 1w6s_A Methanol dehydrogenase 97.4 0.048 1.6E-06 60.5 26.1 54 636-689 481-536 (599)
266 1ijq_A LDL receptor, low-densi 97.3 0.11 3.7E-06 52.6 26.1 184 72-310 10-195 (316)
267 3p5b_L Low density lipoprotein 97.3 0.059 2E-06 56.7 24.6 192 64-311 85-278 (400)
268 2p4o_A Hypothetical protein; p 97.2 0.041 1.4E-06 55.5 22.4 199 51-301 72-279 (306)
269 1w6s_A Methanol dehydrogenase 97.2 0.03 1E-06 62.2 22.8 61 647-708 451-511 (599)
270 1flg_A Protein (quinoprotein e 97.2 0.058 2E-06 59.8 25.0 60 637-696 495-557 (582)
271 2xe4_A Oligopeptidase B; hydro 97.2 0.014 5E-07 67.1 20.6 120 48-180 170-305 (751)
272 3mbr_X Glutamine cyclotransfer 97.2 0.013 4.3E-07 56.4 16.6 173 83-318 10-187 (243)
273 3v9f_A Two-component system se 97.2 0.51 1.8E-05 54.4 33.3 217 51-311 211-437 (781)
274 3sov_A LRP-6, low-density lipo 97.1 0.094 3.2E-06 53.1 23.1 184 71-310 12-197 (318)
275 3m0c_C LDL receptor, low-densi 97.1 0.088 3E-06 60.3 24.8 187 71-312 403-591 (791)
276 1n7d_A LDL receptor, low-densi 97.0 0.0043 1.5E-07 70.6 13.2 209 51-317 406-621 (699)
277 3amr_A 3-phytase; beta-propell 97.0 0.26 8.7E-06 49.9 24.4 202 62-310 40-263 (355)
278 4a0p_A LRP6, LRP-6, low-densit 96.9 0.45 1.5E-05 53.1 28.4 221 51-333 37-261 (628)
279 1k3i_A Galactose oxidase precu 96.9 0.037 1.3E-06 62.6 20.1 66 637-702 409-499 (656)
280 1k3i_A Galactose oxidase precu 96.8 0.0086 3E-07 67.9 13.5 95 29-126 220-323 (656)
281 3kya_A Putative phosphatase; s 96.8 0.41 1.4E-05 51.2 25.5 70 637-708 389-483 (496)
282 2xzh_A Clathrin heavy chain 1; 96.7 0.56 1.9E-05 46.6 24.7 234 57-342 73-322 (365)
283 4a0p_A LRP6, LRP-6, low-densit 96.6 0.45 1.6E-05 53.0 26.0 186 70-313 13-200 (628)
284 3s94_A LRP-6, low-density lipo 96.6 0.41 1.4E-05 53.3 25.0 223 51-333 40-267 (619)
285 4hw6_A Hypothetical protein, I 96.5 0.34 1.2E-05 51.3 22.7 158 52-246 140-303 (433)
286 2ad6_A Methanol dehydrogenase 96.4 0.17 5.9E-06 55.9 20.7 27 290-316 474-500 (571)
287 3v9f_A Two-component system se 96.3 2.2 7.5E-05 49.0 35.9 222 51-311 115-343 (781)
288 3ei3_A DNA damage-binding prot 96.2 3.3 0.00011 49.5 32.1 77 50-126 553-636 (1158)
289 3tc9_A Hypothetical hydrolase; 96.1 0.13 4.6E-06 54.5 17.2 158 52-247 138-301 (430)
290 1bpo_A Protein (clathrin); cla 96.1 1.7 5.6E-05 45.2 26.2 235 57-343 72-322 (494)
291 2p9w_A MAL S 1 allergenic prot 96.1 0.12 4.2E-06 51.8 15.2 179 91-310 10-215 (334)
292 1flg_A Protein (quinoprotein e 96.0 0.27 9.4E-06 54.4 19.5 28 290-317 496-523 (582)
293 2xe4_A Oligopeptidase B; hydro 96.0 0.51 1.8E-05 54.1 22.4 116 53-179 223-354 (751)
294 2p9w_A MAL S 1 allergenic prot 96.0 0.31 1.1E-05 48.9 17.5 169 46-246 8-214 (334)
295 1n7d_A LDL receptor, low-densi 95.9 0.051 1.7E-06 61.7 13.1 166 52-254 454-621 (699)
296 3s94_A LRP-6, low-density lipo 95.8 1.8 6.3E-05 48.0 25.2 202 51-313 349-554 (619)
297 3qqz_A Putative uncharacterize 95.7 1.3 4.5E-05 42.8 20.4 167 51-245 70-251 (255)
298 3tc9_A Hypothetical hydrolase; 95.6 0.12 4.1E-06 54.9 14.0 158 95-310 138-301 (430)
299 2ism_A Putative oxidoreductase 95.0 3.6 0.00012 42.0 22.4 71 51-125 31-113 (352)
300 4hw6_A Hypothetical protein, I 94.9 0.9 3.1E-05 48.1 17.8 173 52-246 229-432 (433)
301 3ii7_A Kelch-like protein 7; p 94.8 2.9 9.8E-05 41.5 20.8 93 28-126 24-127 (306)
302 2xbg_A YCF48-like protein; pho 94.8 3.8 0.00013 41.2 22.3 198 50-308 121-320 (327)
303 3kya_A Putative phosphatase; s 94.6 1.1 3.8E-05 47.9 17.7 174 52-246 140-340 (496)
304 2xn4_A Kelch-like protein 2; s 94.6 2.5 8.6E-05 41.8 19.7 62 61-126 61-133 (302)
305 3pbp_A Nucleoporin NUP82; beta 94.3 0.62 2.1E-05 48.2 14.1 123 52-176 67-209 (452)
306 2vpj_A Kelch-like protein 12; 94.2 4 0.00014 40.3 20.3 106 61-181 62-186 (301)
307 3sre_A PON1, serum paraoxonase 94.1 5.1 0.00017 40.8 20.5 202 52-308 51-296 (355)
308 1xi4_A Clathrin heavy chain; a 93.2 3.9 0.00013 49.1 19.6 234 58-338 73-317 (1630)
309 1zgk_A Kelch-like ECH-associat 93.1 7 0.00024 38.7 19.8 106 61-181 70-195 (308)
310 2xbg_A YCF48-like protein; pho 92.7 9 0.00031 38.4 21.4 160 48-245 160-320 (327)
311 3a9g_A Putative uncharacterize 92.7 9.8 0.00033 38.7 20.4 73 51-126 29-114 (354)
312 4asc_A Kelch repeat and BTB do 92.4 9.5 0.00032 37.8 20.6 65 58-126 42-126 (315)
313 3sre_A PON1, serum paraoxonase 92.3 5.3 0.00018 40.6 17.4 29 282-310 223-252 (355)
314 3pbp_A Nucleoporin NUP82; beta 92.0 8 0.00027 40.0 18.0 164 59-243 29-208 (452)
315 2xn4_A Kelch-like protein 2; s 91.1 6 0.00021 39.0 16.4 107 61-181 108-231 (302)
316 2vpj_A Kelch-like protein 12; 91.0 7.7 0.00026 38.1 17.0 107 61-181 112-233 (301)
317 3ii7_A Kelch-like protein 7; p 90.7 7.3 0.00025 38.4 16.6 106 61-181 101-227 (306)
318 3amr_A 3-phytase; beta-propell 90.5 7.9 0.00027 39.1 16.1 151 107-309 40-209 (355)
319 3ei3_A DNA damage-binding prot 89.1 29 0.001 41.5 22.3 178 27-247 806-999 (1158)
320 1tl2_A L10, protein (tachylect 88.9 15 0.00052 34.3 15.6 97 62-177 4-114 (236)
321 2g8s_A Glucose/sorbosone dehyd 88.2 24 0.00081 35.7 20.9 72 52-125 19-106 (353)
322 1zgk_A Kelch-like ECH-associat 87.7 12 0.00042 36.8 15.7 106 61-181 121-242 (308)
323 4asc_A Kelch repeat and BTB do 87.7 11 0.00037 37.4 15.2 106 61-181 98-223 (315)
324 2woz_A Kelch repeat and BTB do 87.0 25 0.00086 34.7 19.0 66 58-126 53-136 (318)
325 2woz_A Kelch repeat and BTB do 84.5 26 0.0009 34.5 16.2 62 61-126 109-184 (318)
326 2uvk_A YJHT; unknown function, 81.4 41 0.0014 33.7 16.5 53 61-116 65-128 (357)
327 3das_A Putative oxidoreductase 80.8 50 0.0017 33.2 18.0 77 93-179 31-116 (347)
328 2ism_A Putative oxidoreductase 80.4 51 0.0018 33.1 19.8 63 50-114 74-153 (352)
329 1tl2_A L10, protein (tachylect 78.6 4.7 0.00016 37.7 7.0 108 52-173 42-157 (236)
330 2be1_A Serine/threonine-protei 77.8 4.1 0.00014 41.1 7.1 111 63-182 11-133 (339)
331 2zwa_A Leucine carboxyl methyl 77.7 50 0.0017 37.0 16.9 110 60-181 396-524 (695)
332 1cru_A Protein (soluble quinop 77.7 73 0.0025 33.4 18.9 63 51-114 27-99 (454)
333 2g8s_A Glucose/sorbosone dehyd 76.3 53 0.0018 33.1 15.3 60 637-698 287-350 (353)
334 1cru_A Protein (soluble quinop 73.9 91 0.0031 32.6 19.7 70 638-707 368-449 (454)
335 2uvk_A YJHT; unknown function, 68.9 74 0.0025 31.7 14.4 50 72-124 168-224 (357)
336 2zwa_A Leucine carboxyl methyl 67.2 64 0.0022 36.1 14.5 110 61-181 451-579 (695)
337 3a9g_A Putative uncharacterize 67.1 1.1E+02 0.0037 30.7 22.8 62 51-114 73-153 (354)
338 2wg3_C Hedgehog-interacting pr 60.5 56 0.0019 34.4 11.6 53 52-104 15-79 (463)
339 3zwu_A Alkaline phosphatase PH 59.4 22 0.00074 38.8 8.2 53 635-687 483-548 (592)
340 3s25_A Hypothetical 7-bladed b 56.5 1.5E+02 0.0052 28.9 17.8 105 56-181 58-178 (302)
341 4gco_A Protein STI-1; structur 56.1 51 0.0018 27.0 8.6 102 365-476 15-116 (126)
342 2xzh_A Clathrin heavy chain 1; 56.0 1.7E+02 0.0057 29.2 22.5 170 51-251 107-294 (365)
343 4gq2_M Nucleoporin NUP120; bet 54.8 7.9 0.00027 45.4 4.1 37 671-707 237-273 (950)
344 4gq2_M Nucleoporin NUP120; bet 54.6 55 0.0019 38.2 11.2 35 281-315 237-271 (950)
345 1xi4_A Clathrin heavy chain; a 53.2 3.8E+02 0.013 32.6 18.4 171 51-252 106-294 (1630)
346 1bpo_A Protein (clathrin); cla 51.8 2.3E+02 0.0078 29.5 22.5 210 51-312 106-333 (494)
347 1sqj_A OXG-RCBH, oligoxylogluc 49.6 3.1E+02 0.01 31.0 16.3 114 50-171 14-144 (789)
348 3f7f_A Nucleoporin NUP120; nuc 47.3 15 0.00051 40.8 4.5 33 635-667 227-259 (729)
349 3ott_A Two-component system se 45.8 3.6E+02 0.012 30.1 24.2 202 50-312 21-222 (758)
350 3b7f_A Glycosyl hydrolase, BNR 45.5 2.5E+02 0.0086 28.2 19.5 26 149-175 233-258 (394)
351 4a9v_A PHOX; hydrolase, beta-p 43.7 57 0.002 35.2 8.2 53 635-687 483-548 (592)
352 4fhn_B Nucleoporin NUP120; pro 42.1 9.9 0.00034 45.6 2.3 37 671-707 239-275 (1139)
353 3s25_A Hypothetical 7-bladed b 40.1 2.7E+02 0.0092 27.0 16.5 66 222-312 151-218 (302)
354 3b7f_A Glycosyl hydrolase, BNR 39.3 3.1E+02 0.011 27.5 15.8 22 217-238 233-254 (394)
355 4fhn_B Nucleoporin NUP120; pro 37.4 28 0.00094 41.7 5.2 31 635-665 245-275 (1139)
356 3rkv_A Putative peptidylprolyl 36.0 78 0.0027 26.9 6.9 109 363-475 11-131 (162)
357 3sbq_A Nitrous-oxide reductase 35.5 77 0.0026 34.1 7.4 72 51-126 323-408 (638)
358 3sbq_A Nitrous-oxide reductase 33.5 98 0.0034 33.3 7.8 66 635-701 330-409 (638)
359 2wg3_C Hedgehog-interacting pr 32.6 4.5E+02 0.015 27.4 13.5 30 148-178 14-44 (463)
360 3f7f_A Nucleoporin NUP120; nuc 31.5 66 0.0022 35.8 6.4 36 51-88 222-257 (729)
361 2hr2_A Hypothetical protein; a 31.3 18 0.00061 31.8 1.6 108 365-476 13-137 (159)
362 3das_A Putative oxidoreductase 27.6 4.6E+02 0.016 26.0 27.1 81 45-125 26-115 (347)
363 3upv_A Heat shock protein STI1 27.6 1.9E+02 0.0066 22.8 7.7 93 369-471 10-102 (126)
364 3gyz_A Chaperone protein IPGC; 25.2 1.7E+02 0.0058 24.8 7.0 105 361-475 34-138 (151)
365 3zwu_A Alkaline phosphatase PH 24.3 2E+02 0.0068 31.2 8.6 57 54-112 479-547 (592)
366 2be1_A Serine/threonine-protei 23.8 91 0.0031 31.2 5.5 65 639-703 10-79 (339)
367 3qhy_B Beta-lactamase inhibito 23.5 4.8E+02 0.016 24.8 21.0 167 71-310 80-246 (282)
368 4hvt_A Ritya.17583.B, post-pro 22.4 65 0.0022 36.1 4.5 74 628-701 130-226 (711)
369 3qhy_B Beta-lactamase inhibito 21.3 5.3E+02 0.018 24.5 19.5 183 52-310 25-207 (282)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-42 Score=376.02 Aligned_cols=210 Identities=18% Similarity=0.299 Sum_probs=180.9
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.....+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+ .+|...|.+++|+|+ +.+|++|+.|++|+
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK 175 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence 345678899999999999999999999999999999999999999888 799999999999999 79999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+||+... +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+
T Consensus 176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~----------------- 227 (410)
T 1vyh_C 176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV----------------- 227 (410)
T ss_dssp EEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE-----------------
T ss_pred EEeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------
Confidence 9999753 33677889999999999999 6689999999999999999887521
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
..+..|...+.++.|+|+ +.+|++|+.|+.|++||+++......+ .+|..
T Consensus 228 --------~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~- 277 (410)
T 1vyh_C 228 --------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH- 277 (410)
T ss_dssp --------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-
T ss_pred --------EEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-
Confidence 222356778999999997 689999999999999999876544332 12333
Q ss_pred ceeEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCC
Q 004685 281 HLTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 281 ~i~~v~~sp~--------------------g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|.+++|+|+ |.+|++|+.|+.|++||+.++
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 5999999996 678999999999999998763
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-41 Score=352.71 Aligned_cols=215 Identities=14% Similarity=0.246 Sum_probs=183.1
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
+++..++|++|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+ ..|..+|.+++|+|+ +++|++|+.|+.
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence 35667889999999999999999999999999999999999999999988 789999999999999 799999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
|++||+.... .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++...
T Consensus 79 i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~--------------- 132 (304)
T 2ynn_A 79 IRVFNYNTGE----------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL--------------- 132 (304)
T ss_dssp EEEEETTTCC----------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred EEEEECCCCc----------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence 9999998632 3677889999999999999 5689999999999999999876411
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
......|...|.+++|+|.++.+|++|+.|+.|++||++.......+. . +.
T Consensus 133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~-~~ 183 (304)
T 2ynn_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------T-GQ 183 (304)
T ss_dssp ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------C-CC
T ss_pred ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------c-CC
Confidence 122346778899999999767899999999999999998765432221 1 12
Q ss_pred ccceeEEEEcC--CCCEEEEEeCCCeEEEEEcCCC
Q 004685 279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
...+..++|+| ++.+|++|+.|+.|++||+.++
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 22588899987 7889999999999999998763
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.3e-42 Score=391.42 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=187.8
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeC
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~ 104 (737)
.+.+++|+ ....+...+|.+|...|++++|+|+|++||+|+.|++|+|||+.+++ ....+ .+|..+|.+++|+|+
T Consensus 38 ~~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 38 GTSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE 114 (611)
T ss_dssp TTEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT
T ss_pred CCEEEEec--CCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC
Confidence 45788888 45667888999999999999999999999999999999999997543 34456 789999999999999
Q ss_pred CCCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685 105 TSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 105 ~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
+.+|++++.+ +.|++||... ....+.+|...|++++|+|+++..|++|+.|++|++||....
T Consensus 115 --g~~l~~~~~~~~~~~~v~~wd~~~------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 115 --SKRIAAVGEGRERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp --SCEEEEEECCSSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred --CCEEEEEECCCCceeEEEEeeCCC------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 7899988865 4788888542 245678999999999999966567999999999999997664
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
+. +....+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+...
T Consensus 181 ~~-------------------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~--- 231 (611)
T 1nr0_A 181 KF-------------------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDD--- 231 (611)
T ss_dssp EE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCT---
T ss_pred eE-------------------------eeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccc---
Confidence 31 2233468889999999997 689999999999999999887654433110
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
.+...+|.. .|.+++|+|+|++|++++.|++|++||+.+++...
T Consensus 232 ----------~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 232 ----------SLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp ----------TSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ----------cccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 001113444 69999999999999999999999999999865433
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-41 Score=358.05 Aligned_cols=214 Identities=23% Similarity=0.339 Sum_probs=182.8
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
.+...+|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence 4566789999999999999999999999999999999999999999888 789999999999999 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|++...... ......+.+|...|.++.|++ ++ .+++++.|++|++||+++++.
T Consensus 122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~----------------- 176 (340)
T 1got_B 122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ----------------- 176 (340)
T ss_dssp EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-----------------
T ss_pred EEEECccCCCc------ceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-----------------
Confidence 99999864321 123456788999999999998 43 478999999999999987652
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+.....|...|.+++|+|+ +.+|++|+.|+.|++||++++..+..+ .+|..
T Consensus 177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~ 227 (340)
T 1got_B 177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES 227 (340)
T ss_dssp --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence 2223467788999999997 589999999999999999987644333 22333
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|++++|+|++.+|++|+.||.|++||+.++
T Consensus 228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 5999999999999999999999999998874
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.9e-42 Score=366.95 Aligned_cols=228 Identities=24% Similarity=0.370 Sum_probs=188.1
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
......++|+||.+.|++++|+|++++|++|+.|++|+|||+.+++....+ ..|...|.+++|+|+ +.+|++|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~ 130 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS 130 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence 345677889999999999999999999999999999999999999999988 789999999999999 79999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.|++|++...... .........+.+|...|.++.|.|.++..|++|+.|++|++||+++++.+ ..
T Consensus 131 ~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------SI 195 (380)
T ss_dssp CCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------EE
T ss_pred cEEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE------------EE
Confidence 9999999753211 11123356778999999999999977778999999999999999987632 00
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCC
Q 004685 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
+ .......|...+.+++|++.++++|++|+.|+.|++||++.. ..+..+ .+
T Consensus 196 ~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~~ 247 (380)
T 3iz6_a 196 F--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------HG 247 (380)
T ss_dssp E--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------CC
T ss_pred e--------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--------------------CC
Confidence 0 011224677889999999866789999999999999999843 222221 33
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|.. .|++++|+|++.+|++|+.|++|++||+.++.
T Consensus 248 h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 248 HEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred cCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 444 69999999999999999999999999998853
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=353.75 Aligned_cols=209 Identities=18% Similarity=0.295 Sum_probs=173.2
Q ss_pred cceeecccCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 42 QERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
..+.+++|.+.|++++|+|+ +.+|+||+.|++|+|||+..++. ...+ .+|...|.+++|+|+ +.++++++.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s~ 100 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSSL 100 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEET
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEeC
Confidence 34667899999999999985 57999999999999999987654 3346 799999999999999 799999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|++|++||+.... .+..+..|...+.+++|+| ++.+|++++.|+.|++||++.++..
T Consensus 101 D~~i~lWd~~~~~----------~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~------------ 157 (321)
T 3ow8_A 101 DAHIRLWDLENGK----------QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE------------ 157 (321)
T ss_dssp TSEEEEEETTTTE----------EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE------------
T ss_pred CCcEEEEECCCCC----------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee------------
Confidence 9999999998632 2566778888999999999 6689999999999999999887521
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.....+...+.+++|+|+ +++|++|+.|+.|++||+++++.+..+ .
T Consensus 158 -------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~--------------------~ 203 (321)
T 3ow8_A 158 -------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL--------------------E 203 (321)
T ss_dssp -------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------C
T ss_pred -------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------c
Confidence 111234567899999997 689999999999999999987655443 2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+|.. +|.+++|+|++++|++|+.|+.|++||+.++
T Consensus 204 ~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 204 GHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp CCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 2333 5999999999999999999999999998763
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-41 Score=385.14 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=208.9
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 106 (737)
..+.+|+. .+...++.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+ .+|...|.+++|+|+
T Consensus 129 ~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd-- 201 (611)
T 1nr0_A 129 GHVFLFDT----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD-- 201 (611)
T ss_dssp EEEEETTT----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--
T ss_pred eEEEEeeC----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--
Confidence 46777772 345678899999999999999987 6999999999999999999988888 799999999999999
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee-------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+.+|++|+.|++|++||+..+.. ...+ .+|...|.+++|+| ++.+|++++.|++|++||+++
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~----------~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTK----------TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCE----------EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCcEEEEECCCCcE----------eeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Confidence 79999999999999999876432 2233 27999999999999 668999999999999999987
Q ss_pred CCCCCCCC--------------------CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685 180 GSSCPPAG--------------------SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 180 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
++...... ....+....+|+...+. ......+|...|.+++|+|+ +++|++++.|+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~ 347 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSAD-GKTLFSADAEGH 347 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCC-CCEEEEEeCCCc
Confidence 65431110 01112233344444332 22334578899999999997 689999999999
Q ss_pred EEEEECCCCCCcccccCCCCCC-----------------------------CCcc------ccc--cc--cccCCC----
Q 004685 240 ARLYDRRMLPPLTSCQKRMSPP-----------------------------PCVN------YFC--PM--HLSEHG---- 276 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~-----------------------------~~~~------~~~--~~--~~~~~~---- 276 (737)
|++||+.++.....+....... .+.. .+. +. .....+
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 9999998765433221100000 0000 000 00 000000
Q ss_pred ------------------CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-eeeeecCCCCeeeeeccCCCC
Q 004685 277 ------------------RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 277 ------------------~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 335 (737)
.....+.+++|+|+|++|++|+.|+.|++||+..+... .....+...+..++|+|+.+.
T Consensus 428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence 01124789999999999999999999999999875421 223567788899999997543
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-40 Score=352.63 Aligned_cols=218 Identities=18% Similarity=0.274 Sum_probs=183.2
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
.+...+|++|.+.|++++|+|++++||||+.||+|+|||..+++....+ ..|...|.+++|+|+ +.+|++|+.|+.+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence 3567889999999999999999999999999999999999999888888 689999999999999 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++|++....... .......+..|...|.+++|+| ++..|++++.|++|++||+++++..
T Consensus 131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~---------------- 189 (354)
T 2pbi_B 131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL---------------- 189 (354)
T ss_dssp EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence 999987532111 1123456778999999999999 5578899999999999999887521
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
..+..|...|.+++|+|.. +++|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~ 240 (354)
T 2pbi_B 190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE 240 (354)
T ss_dssp ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence 2223567789999998852 579999999999999999987654433 2233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
. .|++++|+|++.+|++|+.|++|++||+.+.
T Consensus 241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp S-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 3 5999999999999999999999999998863
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=355.45 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=179.3
Q ss_pred ccccceeecccCC-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 39 RLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 39 ~~~~~~~l~~H~~-~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
.++.+.+|++|.+ .|.+++|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+|+ +.+|++|+.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEEC
Confidence 3567788999988 9999999999999999999999999999887643 2333689999999999999 799999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
|+.|++|++..... ..+..+.+|...|.+++|+| ++++|++|+.|++|++||++.....
T Consensus 82 D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~------------ 140 (345)
T 3fm0_A 82 DATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY------------ 140 (345)
T ss_dssp TSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred CCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe------------
Confidence 99999999875332 23567889999999999999 6689999999999999999875421
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
..+.....|...|.+++|+|+ +.+|++++.|+.|++||++..+.... . .+ .
T Consensus 141 ----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~-----------~-----~~--~ 191 (345)
T 3fm0_A 141 ----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCC-----------A-----TL--E 191 (345)
T ss_dssp ----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEE-----------E-----EE--C
T ss_pred ----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEE-----------E-----Ee--c
Confidence 112233457788999999997 58999999999999999876532110 0 01 2
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|.. .|.+++|+|+|++|++|+.|++|++|+...
T Consensus 192 ~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 192 GHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 3443 699999999999999999999999999754
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-40 Score=342.56 Aligned_cols=213 Identities=21% Similarity=0.340 Sum_probs=183.9
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
.+....++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+ .+|...|.+++|+|+ +++|++|+.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence 35667789999999999999999999999999999999999999988888 799999999999999 799999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
|++||+... +.+..+.+|...|.++.|+| ++.+|++++.|+.|++||+++++.
T Consensus 89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~---------------- 141 (312)
T 4ery_A 89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC---------------- 141 (312)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE----------------
T ss_pred EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE----------------
Confidence 999999863 23677889999999999999 668999999999999999987652
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
+.....|...+.+++|+|+ +.+|++++.|+.|++||+++++.+..+.. +.
T Consensus 142 ---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------------~~ 191 (312)
T 4ery_A 142 ---------LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID--------------------DD 191 (312)
T ss_dssp ---------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECC--------------------SS
T ss_pred ---------EEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEec--------------------cC
Confidence 1222356778999999997 68999999999999999998765433311 12
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
...+..++|+|++++|++++.|+.|++||+.++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 225899999999999999999999999998874
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-41 Score=356.19 Aligned_cols=211 Identities=18% Similarity=0.193 Sum_probs=160.4
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEE---cccCccceEEEEEeeCCCCCEEEEEECC
Q 004685 46 LEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~------dg~V~vwd~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
..+|...|++++|+|||++||+|+. |+.|++|+..++.....+ ...|...|.+++|+|+ ..+++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~~~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---KGILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---TEEEEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---CCEEEEECC
Confidence 3579999999999999999999997 788999998776533221 1468899999999998 357778899
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
|+|+|||+....... .......+|...|++++|+| ++.+|++|+.|+.|++||+++++.
T Consensus 115 g~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~-------------- 173 (357)
T 4g56_B 115 GAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV-------------- 173 (357)
T ss_dssp SCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE--------------
T ss_pred CEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE--------------
Confidence 999999998654321 11234457999999999999 668999999999999999988652
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
+..+..|...|++++|+|++..++++++.|+.|++||++++++...+.. .
T Consensus 174 -----------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------~- 223 (357)
T 4g56_B 174 -----------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------C- 223 (357)
T ss_dssp -----------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------T-
T ss_pred -----------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------c-
Confidence 2233467789999999998667899999999999999998775543321 1
Q ss_pred CcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCC
Q 004685 277 RSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 277 ~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~ 310 (737)
.....+.+++|+|+ +.+|++|+.|+.|++||+.+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 11225999999997 46788999999999999876
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=351.33 Aligned_cols=209 Identities=18% Similarity=0.180 Sum_probs=161.3
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-----------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
..|...|.+++|+|||++|++++ |+++++||... ....... ..+...|.+++|+|+ ..|++|+.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d---~~l~~~s~ 101 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGE---RGILVASD 101 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETT---TEEEEEET
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCC---CeEEEEEC
Confidence 35778899999999999999888 67888887321 0111111 235678999999998 57899999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
||+|+|||+..+.... .....+.+|...|++++|+| ++++|++|+.|++|++||+++++.
T Consensus 102 dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~------------- 161 (344)
T 4gqb_B 102 SGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV------------- 161 (344)
T ss_dssp TSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-------------
T ss_pred CCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-------------
Confidence 9999999998643211 11234558999999999999 668999999999999999988752
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++....+.. .
T Consensus 162 ------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~ 211 (344)
T 4gqb_B 162 ------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------S 211 (344)
T ss_dssp ------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------
T ss_pred ------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------c
Confidence 2334568889999999998767899999999999999998876554321 1
Q ss_pred CCcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.....+.+++|+|+ +++|++|+.||.|++||++++
T Consensus 212 -~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 212 -APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred -eeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 12224899999995 568889999999999998863
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7e-40 Score=371.79 Aligned_cols=356 Identities=22% Similarity=0.315 Sum_probs=290.4
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
.+.++.+++|+. ..+....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus 198 ~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~-~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 198 ASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVNGVAFRP 272 (577)
T ss_dssp EETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred EcCCCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEE-ecCCCCEEEEEEcC
Confidence 456788999983 456778899999999999999999999999999999999964 5677777 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ +..|++++.|+.|++|+... +.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....
T Consensus 273 d--~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~-- 336 (577)
T 2ymu_A 273 D--GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH-- 336 (577)
T ss_dssp T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--
T ss_pred C--CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--
Confidence 9 79999999999999999753 33677889999999999999 66899999999999999976542
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
+.....|...+.+++|+|+ +.+|++++.|+.|++||.. ++.+..+
T Consensus 337 ------------------------~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~~-~~~~~~~--------- 381 (577)
T 2ymu_A 337 ------------------------LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL--------- 381 (577)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETT-CCEEEEE---------
T ss_pred ------------------------eEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcCC-CCEEEEe---------
Confidence 1122356778999999997 6899999999999999964 3322221
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCC
Q 004685 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 343 (737)
.+|.. .|++++|+|+|++|++++.|+.|++||.. ++....+..+...+..++|+|+...++....
T Consensus 382 -----------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-- 446 (577)
T 2ymu_A 382 -----------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASD-- 446 (577)
T ss_dssp -----------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred -----------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcC--
Confidence 12332 59999999999999999999999999964 4555666677777888888886432111000
Q ss_pred CcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccch
Q 004685 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDA 423 (737)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (737)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCC
Q 004685 424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG 503 (737)
Q Consensus 424 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 503 (737)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCc
Q 004685 504 ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA 583 (737)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (737)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEE
Q 004685 584 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 663 (737)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~ 663 (737)
++.+..|....+..+.+.+|...++++. |+||+++|++|+.|++|+||| .+++++.
T Consensus 447 -------------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw~-~~~~~~~ 502 (577)
T 2ymu_A 447 -------------------DKTVKLWNRNGQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWN-RNGQLLQ 502 (577)
T ss_dssp -------------------TSEEEEEETTSCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEEE-TTSCEEE
T ss_pred -------------------CCEEEEEECCCCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEEc-CCCCEEE
Confidence 0000001122345668899999988777 899999999999999999999 4799999
Q ss_pred EeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685 664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (737)
Q Consensus 664 ~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~ 715 (737)
.|.+|.+.|++|+|+|++++|||++.||+|+|||. +++++.++.||.++++
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence 99999999999999999999999999999999995 6888999999999886
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-39 Score=368.34 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=198.7
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
.+.++.+++|+. ..+.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus 239 ~~~d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 239 ASDDKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP 313 (577)
T ss_dssp EETTSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred EeCCCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC
Confidence 456788999983 456778899999999999999999999999999999999964 5667777 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ +.+|++++.|+.|++||... ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||.....
T Consensus 314 ~--~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~-- 377 (577)
T 2ymu_A 314 D--GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQL-- 377 (577)
T ss_dssp T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCE--
T ss_pred C--CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCE--
Confidence 9 79999999999999999864 22567788999999999999 66899999999999999954321
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
+.....|...|.+++|+|+ +++|++++.|+.|++||.. ++.+..+
T Consensus 378 ------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~-~~~~~~~--------- 422 (577)
T 2ymu_A 378 ------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL--------- 422 (577)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-CCEEEEE---------
T ss_pred ------------------------EEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCC-CCEEEEe---------
Confidence 1222346778999999997 5899999999999999964 3322221
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
.+|.. .|++++|+|++++|++++.|+.|++||.. ++....+..+...+..++|+|+.
T Consensus 423 -----------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 423 -----------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp -----------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS
T ss_pred -----------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC
Confidence 12333 59999999999999999999999999975 46666677778888889998864
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-39 Score=346.97 Aligned_cols=209 Identities=20% Similarity=0.302 Sum_probs=167.2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc------------------cceEEEEEeeCCCCCE
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL 109 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~------------------~~V~~v~~sp~~~~~~ 109 (737)
+|.+.|++++|+|+|++||+|+ ++.++||++.+++.+..+ ..|. ..|.+++|+|+ +.+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence 6999999999999999999986 689999999999888777 3332 24999999999 799
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~ 189 (737)
|++|+.|+.|++||+... +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..
T Consensus 138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------ 200 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------ 200 (393)
T ss_dssp EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence 999999999999999853 23677889999999999999 5688999999999999999876521
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (737)
.. + .+...+.+++|+|.++.+|++|+.|+.|++||++++..+..+....
T Consensus 201 -----~~-----------~----~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~----------- 249 (393)
T 1erj_A 201 -----LT-----------L----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN----------- 249 (393)
T ss_dssp -----EE-----------E----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred -----EE-----------E----EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-----------
Confidence 00 0 1235689999999657899999999999999999876544332110
Q ss_pred ccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....+|.. .|.+++|+|+|++|++|+.|+.|++||+.+.
T Consensus 250 --~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 250 --ESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred --cCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 00122333 6999999999999999999999999998873
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.6e-39 Score=334.58 Aligned_cols=212 Identities=18% Similarity=0.291 Sum_probs=177.0
Q ss_pred ccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEEcccCccceEEEEEeeCCCCCEEEE
Q 004685 39 RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s 112 (737)
.+.+..+|++|.+.|++++|+|++ ++|++|+.|++|++||+.. +..+..+ .+|...|.+++|+|+ +.+|++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEEE
Confidence 355677899999999999999965 8999999999999999864 2345667 799999999999999 799999
Q ss_pred EECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCc
Q 004685 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (737)
Q Consensus 113 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~ 192 (737)
|+.|++|++||+..+. .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++...
T Consensus 83 ~s~D~~v~~wd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~----------- 140 (319)
T 3frx_A 83 ASWDKTLRLWDVATGE----------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC----------- 140 (319)
T ss_dssp EETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE-----------
T ss_pred EeCCCEEEEEECCCCC----------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-----------
Confidence 9999999999998632 3677889999999999999 66899999999999999986432
Q ss_pred cceEEEeccCCceeeccCCCCCccceEEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-----~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
+.....|...+.++.|+|.. +..+++++.|+.|++||++..+....+
T Consensus 141 ---------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------- 192 (319)
T 3frx_A 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------------- 192 (319)
T ss_dssp ---------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-------------
T ss_pred ---------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-------------
Confidence 22233567789999999852 348999999999999999876543322
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|.. .|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 193 -------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 193 -------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp -------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred -------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 22433 6999999999999999999999999998874
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=332.62 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=169.7
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEccc-CccceEEEEEeeCCCCCEEEEEE
Q 004685 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
+.++.+.+|++|.++|++++|+|+ +||+|+.|++|+|||+..+ +.+..+... |...|.+++|+|+ +.+|++|+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence 345677889999999999999987 9999999999999999875 444555234 9999999999999 79999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|++|+|||+...... .....++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.....
T Consensus 78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~----------- 142 (330)
T 2hes_X 78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE----------- 142 (330)
T ss_dssp TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence 9999999998642110 001233567889999999999999 6689999999999999999643210
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--CcccccCCCCCCCCccccccccc
Q 004685 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
...+.....|...|.+++|+|+ +.+|++++.|+.|++||.+... .+..+
T Consensus 143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------------------ 193 (330)
T 2hes_X 143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECVAVL------------------ 193 (330)
T ss_dssp ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEE------------------
T ss_pred ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCeeEEEEc------------------
Confidence 0112233467789999999997 5899999999999999987542 11111
Q ss_pred cCCCCcccceeEEEEcCC--CCEEEEEeCCCeEEEEEcCC
Q 004685 273 SEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~--g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+|.. .|.+++|+|+ +.+|++|+.|++|++||+..
T Consensus 194 --~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 194 --NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp --CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred --cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 23443 6999999998 77899999999999999876
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.8e-38 Score=332.15 Aligned_cols=213 Identities=19% Similarity=0.273 Sum_probs=173.7
Q ss_pred ccccceeecccCCceEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCccceEEEEEeeCC
Q 004685 39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~-----s~-~g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
..+...+|+||.+.|++++| ++ ++++|++|+.|++|+|||+.+. .....+ .+|...|.+++|+|+
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~- 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE- 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence 34566789999999999999 77 8999999999999999999753 345566 799999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~ 185 (737)
+.++++|+.|++|++||++... .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.....
T Consensus 88 -~~~l~s~s~D~~v~lwd~~~~~----------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~--- 152 (343)
T 2xzm_R 88 -NCFAISSSWDKTLRLWDLRTGT----------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK--- 152 (343)
T ss_dssp -TTEEEEEETTSEEEEEETTSSC----------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred -CCEEEEEcCCCcEEEEECCCCc----------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence 7999999999999999998632 3677889999999999999 668899999999999999874321
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---------CcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004685 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---------~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (737)
........|...+.+++|+|.. +.+|++++.|+.|++||.+. +....+
T Consensus 153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-- 209 (343)
T 2xzm_R 153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF-- 209 (343)
T ss_dssp --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEE--
T ss_pred --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEE--
Confidence 1122233567789999999974 26899999999999999532 211111
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+|.. .|.+++|+|+|++|++|+.||.|++||+..
T Consensus 210 ------------------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 210 ------------------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp ------------------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ------------------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 22333 599999999999999999999999999854
No 19
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-40 Score=405.00 Aligned_cols=473 Identities=17% Similarity=0.227 Sum_probs=322.1
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
.+.+++|++|+ ..+.+.+.++.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus 633 ~~~d~~i~vw~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~ 709 (1249)
T 3sfz_A 633 CGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTN 709 (1249)
T ss_dssp EETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred EeCCCeEEEEE--CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEec
Confidence 46778999999 5667788999999999999999999999999999999999999999999999 79999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+.++.++++|+.|+.|++||+.... +...+.+|...|++++|+| ++.++++++.||.|++||++++...
T Consensus 710 ~~~~~~l~sg~~d~~v~vwd~~~~~----------~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~ 778 (1249)
T 3sfz_A 710 KSNHLLLATGSNDFFLKLWDLNQKE----------CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANER 778 (1249)
T ss_dssp SSSCCEEEEEETTSCEEEEETTSSS----------EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEE
T ss_pred CCCceEEEEEeCCCeEEEEECCCcc----------hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccc
Confidence 6446799999999999999998632 3677889999999999999 6689999999999999999876421
Q ss_pred CC----------------------CCCCCC---------ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685 184 PP----------------------AGSSHQ---------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (737)
Q Consensus 184 ~~----------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 232 (737)
.. ...... .....+|+...+..... ....|...+.+++|+|+ +.+++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~ 856 (1249)
T 3sfz_A 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY-DHLAV 856 (1249)
T ss_dssp EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS-TTEEE
T ss_pred ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC-CCEEE
Confidence 00 000001 12233444444432211 12356788999999997 58999
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+++.|+.|++||+.++..+..+ .+|.. .|++++|+|+|.+|++++.||.|++|++.+..
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred EEeCCCeEEEEEcCCCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 9999999999999977644333 22333 69999999999999999999999999976421
Q ss_pred cc-------------------------------------eeeeecCCCCeeeeeccCCCCccCCCCCCCccccccccccc
Q 004685 313 GR-------------------------------------AMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE 355 (737)
Q Consensus 313 ~~-------------------------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 355 (737)
.. .........+..++|+|+...++.....+.......
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~----- 990 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL----- 990 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET-----
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc-----
Confidence 10 011112344556666666554443322221111000
Q ss_pred ccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhc
Q 004685 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (737)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 435 (737)
..+... ..+..+...+. .+
T Consensus 991 -------------------~~~~~~--------~~~~~h~~~v~---------------------------------~l- 1009 (1249)
T 3sfz_A 991 -------------------PNNRVF--------SSGVGHKKAVR---------------------------------HI- 1009 (1249)
T ss_dssp -------------------TTTSCE--------EECCCCSSCCC---------------------------------CE-
T ss_pred -------------------CCCcee--------eecccCCCceE---------------------------------EE-
Confidence 000000 00000000000 00
Q ss_pred cCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCcccc
Q 004685 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLS 515 (737)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 515 (737)
...|....++++..+....+|+..++...... .+...+.
T Consensus 1010 ---------------------------------~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~v~- 1048 (1249)
T 3sfz_A 1010 ---------------------------------QFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-------AHQETVK- 1048 (1249)
T ss_dssp ---------------------------------EECSSSSCEEEECSSSBEEEEETTTTEEECCB-------CCSSCEE-
T ss_pred ---------------------------------EECCCCCEEEEEcCCCEEEEEECCCCceEEEe-------cCCCcEE-
Confidence 00011111110111111112222111100000 0000000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCC
Q 004685 516 LSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGS 595 (737)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (737)
.+.+. ..+.
T Consensus 1049 ---------------------------------------------------------~~~~~--------------~~~~ 1057 (1249)
T 3sfz_A 1049 ---------------------------------------------------------DFRLL--------------QDSR 1057 (1249)
T ss_dssp ---------------------------------------------------------EEEEC--------------SSSE
T ss_pred ---------------------------------------------------------EEEEc--------------CCCc
Confidence 00000 0011
Q ss_pred CCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEE
Q 004685 596 PSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCV 675 (737)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v 675 (737)
.++.+.++.+.+|.....+..+.+.+|.+.++++. |+||++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA----ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE----ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEE
T ss_pred EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE----ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEE
Confidence 12223444566677777888999999999998877 99999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEecCCcEEEEcCCCCCCcccc---------CCCCCCCh
Q 004685 676 QCHPFDCVVATSGIDNTIKIWTPSASVPSIVS---------GGAAGPDT 715 (737)
Q Consensus 676 ~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~---------~~~~~~~~ 715 (737)
+|||++++|||++.||+|++||+.+++++... .+|.++++
T Consensus 1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1182 (1249)
T 3sfz_A 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182 (1249)
T ss_dssp EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEE
Confidence 99999999999999999999999999988876 56777765
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-37 Score=324.81 Aligned_cols=223 Identities=20% Similarity=0.302 Sum_probs=177.7
Q ss_pred cccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCccceEEEEEee
Q 004685 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~~~V~~v~~sp 103 (737)
+.++....+++++..+|+||++.|++|+|+|+ +++||||+.|++|+|||+.+.+ ....+ .+|...|.+++|+|
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISS 96 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECC
Confidence 33444556677788899999999999999997 6899999999999999987643 45556 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ +.+|++++.|+.|++|+..... .......+...+..+.+++ .+.+|++++.|+.+++||+.....
T Consensus 97 d--g~~l~s~~~d~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~- 162 (340)
T 4aow_A 97 D--GQFALSGSWDGTLRLWDLTTGT----------TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK- 162 (340)
T ss_dssp T--SSEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-
T ss_pred C--CCEEEEEcccccceEEeecccc----------eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce-
Confidence 9 7999999999999999998632 2455566778888999998 567888999999999999876531
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
.......|...+..++|+++. ..++++++.|+.|++||+++.+.+..+
T Consensus 163 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-------- 211 (340)
T 4aow_A 163 -----------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-------- 211 (340)
T ss_dssp -----------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred -----------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe--------
Confidence 122334567788999998764 347889999999999999987654433
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|.. .|++++|+|++++|++|+.|+.|++||+.+.
T Consensus 212 ------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 212 ------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 22333 6999999999999999999999999998873
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=331.35 Aligned_cols=236 Identities=11% Similarity=0.155 Sum_probs=177.1
Q ss_pred cccCCceEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEEccc----------CccceEEEEEeeCC
Q 004685 47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIETG----------HSANVFCTKFVPET 105 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~----~~~~------~~~~~~~~----------h~~~V~~v~~sp~~ 105 (737)
..|.++|++++|+|+++ +||+|+.||.|++||+ .+++ ....+ .. |...|.+++|+|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~- 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD- 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT-
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC-
Confidence 34669999999999999 9999999999999999 8877 44444 22 6789999999998
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~ 185 (737)
+.+|++|+.||.|++||... ..+..+..|...|.+++|+| ++.+|++++.|+.|++||+.+++....
T Consensus 120 -~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 120 -GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred -CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 79999999999999999432 33677888999999999999 668899999999999999987753210
Q ss_pred CCCCCCccceEEEeccCCce--eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685 186 AGSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
. ....... ............+.+++|+|+ ..+++++.|+.|++||++..+.+..+.
T Consensus 187 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~-------- 244 (425)
T 1r5m_A 187 F------------ELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLI-------- 244 (425)
T ss_dssp E------------CCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEEC--------
T ss_pred e------------eccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeec--------
Confidence 0 0000000 000000111223888999996 479999999999999999876544331
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+...+..++|+|+
T Consensus 245 ------------~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 245 ------------GHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp ------------CCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred ------------cCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence 1222 5999999999999999999999999999997766666667777777888774
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=334.43 Aligned_cols=244 Identities=16% Similarity=0.225 Sum_probs=187.2
Q ss_pred Cccccccccccccccc-ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCccceEEE
Q 004685 25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT 99 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~----~~~~~~~~~~h~~~V~~v 99 (737)
+.++.|++|+...... ++...+ .|...|++++|+|++++|++|+.||.|++||+.+ .+.+..+ .+|...|.++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~ 119 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV 119 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence 6788999999554433 244444 5899999999999999999999999999999987 3467777 7899999999
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+|+|+. +.+|++++.|+.|++||+.......... ..........|...|.+++|+|+++.+|++++.|+.|++||+++
T Consensus 120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EEcCCC-CCEEEEEcCCCeEEEEECCCCccccccc-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 999984 6899999999999999998754110000 00112334679999999999996578999999999999999988
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCC-Cccccc
Q 004685 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ 255 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~-~~~~~~ 255 (737)
++.. ..+.. ......|...+.+++|+|++..++++++.|+ .|++||+++.. ++..+.
T Consensus 198 ~~~~--------------~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~ 258 (416)
T 2pm9_A 198 KKEV--------------IHLSY-----TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN 258 (416)
T ss_dssp TEEE--------------EEECC-----CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC
T ss_pred CCcc--------------eEEec-----cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee
Confidence 6532 00000 0001223678999999998667999999999 99999999753 222211
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++
T Consensus 259 -------------------~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 259 -------------------QGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp -------------------SCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred -------------------cCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 02333 599999999 9999999999999999998763
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.7e-37 Score=349.70 Aligned_cols=233 Identities=10% Similarity=0.114 Sum_probs=190.0
Q ss_pred cccccccccccccc----ccceeecccCCc-eEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------eEEEEEccc
Q 004685 27 NHSLQMHSSLVRRL----SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETG 91 (737)
Q Consensus 27 ~~~~~~~~~~~~~~----~~~~~l~~H~~~-V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~--------~~~~~~~~~ 91 (737)
++.+.+|+. .+. +....+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +.+..+ ..
T Consensus 38 ~~~v~v~~~--~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~ 114 (615)
T 1pgu_A 38 GKSAFVRCL--DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV 114 (615)
T ss_dssp TTEEEEEEC--CSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC
T ss_pred CCeEEEEEC--CCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc
Confidence 578999994 355 788999999999 99999999 9999999999999999999754 566667 68
Q ss_pred CccceEEEEEeeCCCCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004685 92 HSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 92 h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
|..+|.+++|+|+ +.+|++++.+ +.|++||.. ..+..+.+|...|.+++|+|++..++++++
T Consensus 115 ~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 115 LAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp CSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred ccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence 9999999999999 7999999988 789999843 236778899999999999996655899999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc---ceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYD 244 (737)
Q Consensus 168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~sp~~~~~l~t~s~Dg~i~iwd 244 (737)
.|+.|++||+.+.+.. .....|.. .|.+++|+|+++++|++++.|+.|++||
T Consensus 181 ~d~~v~vwd~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFS-------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp TTTEEEEEETTTBEEE-------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred CCCcEEEEeCCCccee-------------------------eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 9999999998776421 12234555 8999999997358999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 319 (737)
+++++.+..+... ..+|.. .|.+++|+ ++.+|++++.|+.|++||+.+++.......
T Consensus 236 ~~~~~~~~~~~~~----------------~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 236 GKSGEFLKYIEDD----------------QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTTCCEEEECCBT----------------TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEeEEeccc----------------ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9987755443100 002333 59999999 999999999999999999998765444443
No 24
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.4e-37 Score=333.31 Aligned_cols=220 Identities=13% Similarity=0.158 Sum_probs=174.7
Q ss_pred ccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
.++......+|...|+||+|+| ++.+||+|+.||.|+|||+.+++... .+ .+|...|++|+|+|.. +.+|++|+.
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~-~~~l~s~s~ 185 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLN-TNQFYASSM 185 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSC-TTEEEEECS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCC-CCEEEEEeC
Confidence 3455566778999999999999 67799999999999999998765433 34 5899999999999853 789999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
||+|++||++.... ........+...+.+++|+| ++.+|++|+.||.|++||++...
T Consensus 186 D~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~-------------- 242 (435)
T 4e54_B 186 EGTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE-------------- 242 (435)
T ss_dssp SSCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB--------------
T ss_pred CCEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce--------------
Confidence 99999999975221 11122233455688999999 66899999999999999987533
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
+.....|...|.+++|+|++..+|++|+.|+.|++||++..+....+.. ..
T Consensus 243 ------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----------------~~ 293 (435)
T 4e54_B 243 ------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----------------SL 293 (435)
T ss_dssp ------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----------------CC
T ss_pred ------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-----------------ee
Confidence 2234467889999999998777999999999999999997654332210 12
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
+|.. .|++++|+|+|.+|++++.||.|++||+.++..
T Consensus 294 ~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 294 PHRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp BCSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred eccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 2333 699999999999999999999999999998653
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-36 Score=324.13 Aligned_cols=223 Identities=13% Similarity=0.166 Sum_probs=177.4
Q ss_pred ccccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEE
Q 004685 37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGA 114 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs 114 (737)
...++....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. .+|...|.+++|+|+. +.+|++++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence 35667788999999999999999998 999999999999999999888777663 2699999999999942 68999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.|+.|++||+..... ........|...|.+++|+| ++.+|++++.|+.|++||++...
T Consensus 139 ~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------------- 196 (383)
T 3ei3_B 139 IRGATTLRDFSGSVI--------QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHE------------- 196 (383)
T ss_dssp TTTEEEEEETTSCEE--------EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCE-------------
T ss_pred CCCEEEEEECCCCce--------EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCE-------------
Confidence 999999999984211 11222234558899999999 66899999999999999984221
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
+.....|...|.+++|+|++..+|++++.|+.|++||+++.+....+ ...
T Consensus 197 -------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~-------- 246 (383)
T 3ei3_B 197 -------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY---------IAE-------- 246 (383)
T ss_dssp -------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE---------EEE--------
T ss_pred -------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce---------EEE--------
Confidence 12223567889999999985449999999999999999974421111 111
Q ss_pred CCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc
Q 004685 275 HGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~ 313 (737)
.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++..
T Consensus 247 ~~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 247 MPHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred ecCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 11222 699999999 999999999999999999998653
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=312.06 Aligned_cols=223 Identities=17% Similarity=0.276 Sum_probs=177.8
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
......|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+ +.+|++++.||.|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i 98 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSI 98 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeE
Confidence 3445678999999999999999999999999999999999999999998 789999999999998 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCCCCCCccc
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
++||+.... .+..+. +...|.+++|+| ++.++++++.+ +.|.+||+...............
T Consensus 99 ~iwd~~~~~----------~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-- 164 (369)
T 3zwl_B 99 KLWDVSNGQ----------CVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE-- 164 (369)
T ss_dssp EEEETTTCC----------EEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS--
T ss_pred EEEECCCCc----------EEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc--
Confidence 999998633 244454 888999999999 66888899998 99999999887643111110000
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCcccccccccc
Q 004685 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
....+. .......+.+++|+|+ +++|++++.||.|++||+++ ...+..+
T Consensus 165 ---------~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------- 214 (369)
T 3zwl_B 165 ---------PIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI------------------- 214 (369)
T ss_dssp ---------CSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE-------------------
T ss_pred ---------eeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE-------------------
Confidence 001111 1112238999999997 58999999999999999987 3333222
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 215 -~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 215 -DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp -ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred -ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 11222 5999999999999999999999999998874
No 27
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=358.81 Aligned_cols=232 Identities=10% Similarity=0.076 Sum_probs=176.1
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
.||.+.|++++|+|++++||+|+.||.|+|||..+.+....+ .|..+|.+++|+|. .+|++++.|++|++||+..
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETTT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECCC
Confidence 489999999999999999999999999999999888776554 48889999999993 6999999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.. .+..+. |...|++++|+| ++.+|++|+.||.|++||++++... -+.. ....
T Consensus 89 ~~----------~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~~ 141 (902)
T 2oaj_A 89 QK----------VLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNLQ 141 (902)
T ss_dssp CS----------EEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCHH
T ss_pred Cc----------EEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------ccee--cccc
Confidence 32 244554 778999999999 6689999999999999999876421 0000 0000
Q ss_pred ec-cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685 207 SL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 207 ~~-~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
.. .....|...|.+++|+|+++..+++|+.|+.| +||+++.+.+..+.....+....... .. .. ..++...|+++
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~-~~-~~-~~~h~~~V~~v 217 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF-SE-KT-NEKRTPKVIQS 217 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT-CC-CT-TSCBCCCEEEE
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc-cc-cc-ccccCCCeEEE
Confidence 00 23456788999999999766799999999999 99999887665553221110000000 00 00 11222369999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 286 ~~sp~g~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
+|+|+|.+|++|+.||.|++||+.+++..
T Consensus 218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 99999999999999999999999987643
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-36 Score=368.95 Aligned_cols=261 Identities=18% Similarity=0.196 Sum_probs=209.7
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+ +.+|++|+.|+.|+
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVK 682 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEE
Confidence 344578899999999999999999999999999999999999999999 799999999999999 79999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+||+.++ +.+..+.+|...|.+++|+|+ +..++++|+.|+.|++||++++..
T Consensus 683 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----------------- 735 (1249)
T 3sfz_A 683 IWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----------------- 735 (1249)
T ss_dssp EEETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------------
T ss_pred EEECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------------
Confidence 9999863 236778899999999999985 345899999999999999988752
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC-------------CCCCccc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNY 266 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~ 266 (737)
+.....|...|.+++|+|+ +.++++++.||.|++||++++.....+..... ...++ .
T Consensus 736 --------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 805 (1249)
T 3sfz_A 736 --------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC-S 805 (1249)
T ss_dssp --------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC-C
T ss_pred --------hheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE-E
Confidence 2223357789999999997 58999999999999999987764433321110 00000 0
Q ss_pred cccc-----------------------cccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC
Q 004685 267 FCPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA 323 (737)
Q Consensus 267 ~~~~-----------------------~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 323 (737)
+.+. .....+|. ..|.+++|+|++.++++++.||.|++||+.++.......++...
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 0000 00001333 36999999999999999999999999999998877778888999
Q ss_pred CeeeeeccCCCCccCCCCC
Q 004685 324 SKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 324 ~~~~~~~p~~~~~~~~~~~ 342 (737)
+..++|+|+...+......
T Consensus 885 v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEEEECTTSSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEeCC
Confidence 9999999987766554443
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-35 Score=308.11 Aligned_cols=168 Identities=16% Similarity=0.221 Sum_probs=138.8
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
...++ .+|...|.+++|+|+ +.+|++|+.||.|++||+.... .+..+..|..+|.+++|+| ++++|
T Consensus 5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l 70 (304)
T 2ynn_A 5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQV----------EVRSIQVTETPVRAGKFIA-RKNWI 70 (304)
T ss_dssp CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCCc----------eeEEeeccCCcEEEEEEeC-CCCEE
Confidence 44566 789999999999999 7999999999999999998632 2677888999999999999 66899
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
++|+.|++|++||+.+++. +.....|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEK-------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW 124 (304)
T ss_dssp EEEETTSEEEEEETTTCCE-------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred EEECCCCEEEEEECCCCcE-------------------------EEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence 9999999999999988752 2223457889999999997 5899999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|+++....... + .+|.. .|.+++|+| ++.+|++|+.|+.|++||+.+.
T Consensus 125 d~~~~~~~~~~-----------------~--~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 125 NWENNWALEQT-----------------F--EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp EGGGTTEEEEE-----------------E--CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred ECCCCcchhhh-----------------h--cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99865322110 0 22333 599999999 6789999999999999998763
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-35 Score=319.99 Aligned_cols=231 Identities=16% Similarity=0.150 Sum_probs=175.2
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeC--CCC---CE
Q 004685 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL 109 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~--~~~---~~ 109 (737)
+....+++|.++|++++|+| ++|++|+.||.|+|||+.+++ .+..+ .+|...|.+++|+|+ .++ .+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence 45677889999999999998 899999999999999999887 67777 689999999999997 115 79
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC-----CCceeEEEEe----cCCCcE-EEEEeCCCcEEEEEcCC
Q 004685 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----p~~~~~-l~s~s~Dg~I~vwdl~~ 179 (737)
|++++.||.|++|++....... ......+..| ...|.+++|+ | ++.+ |++++.||.|++||++.
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999998643210 0114566777 5899999999 8 5577 99999999999999998
Q ss_pred ------CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685 180 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 180 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
...+... ....+.. .+.....|...+.+++|+|+ + +|++++.|+.|++||+++.+.+..
T Consensus 158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence 4432100 0000000 01111346678999999997 5 999999999999999998765544
Q ss_pred ccCCCCCCCCccccccccccCCCC--cccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAG 312 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~ 312 (737)
+... .+| ....|.+++|+|++.+|++++.| +.|++||+.+++
T Consensus 223 ~~~~-----------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 223 FESQ-----------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EECC-----------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred Eecc-----------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 3210 012 02369999999999999999999 999999998754
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-35 Score=304.60 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=172.1
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
...++..+|.+|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+ +.+|++++.||
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg 81 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT 81 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence 345778899999999999999 99999999999999999999999888888 789999999999999 79999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.|++|++...... ++...+..|...|.++.|+ +.++++++.|+.|++|| ...
T Consensus 82 ~i~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~---------------- 133 (313)
T 3odt_A 82 MINGVPLFATSGE-------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS---------------- 133 (313)
T ss_dssp CEEEEETTCCTTS-------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE----------------
T ss_pred eEEEEEeeecCCC-------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc----------------
Confidence 9999999864321 3467788899999999994 36899999999999999 221
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
.+.....|...+.+++|+|.+++++++++.|+.|++||... ....+ ...
T Consensus 134 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~--------------------~~~ 182 (313)
T 3odt_A 134 ---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTF--------------------SGI 182 (313)
T ss_dssp ---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEE--------------------CSS
T ss_pred ---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEE--------------------ecc
Confidence 11122346778999999995578999999999999999432 11111 111
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....|.+++|+|++. +++++.||.|++||+.++
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 223699999999998 999999999999998763
No 32
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=330.49 Aligned_cols=245 Identities=13% Similarity=0.176 Sum_probs=176.6
Q ss_pred cccccceee-cccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC---Ce---EEEEEcccCccceEEEEEeeCCCCCE
Q 004685 38 RRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDEL 109 (737)
Q Consensus 38 ~~~~~~~~l-~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~---~~---~~~~~~~~h~~~V~~v~~sp~~~~~~ 109 (737)
.+.+++.++ ++|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|.+++|+|+ +.+
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~ 125 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FDA 125 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SSE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CCE
Confidence 345677788 89999999999999 999999999999999999876 43 22333 58999999999998 799
Q ss_pred EEEEECCCcEEEEecCCC-CCCCCCCCCCCCceee--cc--CCCceeEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 110 VVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALY--QC--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 110 l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~--~~--h~~~v~~l~--~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
|++|+.||.|++||+... .+..........+..+ .. +...+.++. +++ ++.+|++++.|+.|++||+++++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee
Confidence 999999999999999521 1111000000001111 11 456677777 445 568999999999999999988753
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
. . ....+.|...|++++|+|+ +.+|++|+.||.|++||+++++.+..+.
T Consensus 205 ~-----------~------------~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------- 253 (437)
T 3gre_A 205 L-----------Q------------IIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS------- 253 (437)
T ss_dssp E-----------E------------EEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB-------
T ss_pred e-----------E------------EEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe-------
Confidence 2 0 1111125678999999997 6899999999999999999876554432
Q ss_pred CccccccccccCCCCcccceeEEEEcC----CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685 263 CVNYFCPMHLSEHGRSSLHLTHVTFSP----NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp----~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
..+.. .|++++|+| ++.+|++|+.||.|++||+.+++....+..+...+..+.|+|
T Consensus 254 ------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 254 ------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp ------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred ------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 11222 599996664 688999999999999999998765554444443333333333
No 33
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=312.51 Aligned_cols=267 Identities=16% Similarity=0.187 Sum_probs=222.4
Q ss_pred EEEcccCccceEEEEEeeCC--CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685 86 HSIETGHSANVFCTKFVPET--SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
..+ .+|...|.+++|+|+. ++.+|++|+.|++|++|++..... .....+.+|...|.+++|++ +..++
T Consensus 26 ~~~-~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~--------~~~~~l~gh~~~v~~~~~~~-~~~~l 95 (321)
T 3ow8_A 26 KQE-QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL--------DLQWSLEGHQLGVVSVDISH-TLPIA 95 (321)
T ss_dssp EET-TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECS-SSSEE
T ss_pred eec-ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe--------eeeeeeccCCCCEEEEEECC-CCCEE
Confidence 344 6899999999999852 257999999999999999875321 12456789999999999999 56899
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
++++.|++|++||+.+++.+ .....+...+.+++|+|+ +++|++++.|+.|++|
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~-------------------------~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQI-------------------------KSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIF 149 (321)
T ss_dssp EEEETTSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEE
T ss_pred EEEeCCCcEEEEECCCCCEE-------------------------EEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEE
Confidence 99999999999999887522 111234556788999997 6899999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC
Q 004685 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA 323 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 323 (737)
|+++++....+. .+. ..|.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 150 ~~~~~~~~~~~~--------------------~~~-~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~----------- 197 (321)
T 3ow8_A 150 GVESGKKEYSLD--------------------TRG-KFILSIAYSPDGKYLASGAIDGIINIFDIATGK----------- 197 (321)
T ss_dssp ETTTCSEEEEEE--------------------CSS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------
T ss_pred EcCCCceeEEec--------------------CCC-ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------
Confidence 999876443321 121 259999999999999999999999999987632
Q ss_pred CeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcch
Q 004685 324 SKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 403 (737)
Q Consensus 324 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (737)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHH
Q 004685 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (737)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (737)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCccc
Q 004685 484 IKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDV 563 (737)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (737)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEE
Q 004685 564 EANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIA 643 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~ 643 (737)
..+.+.+|...++++. |+||+++|+
T Consensus 198 ---------------------------------------------------~~~~~~~h~~~v~~l~----~spd~~~l~ 222 (321)
T 3ow8_A 198 ---------------------------------------------------LLHTLEGHAMPIRSLT----FSPDSQLLV 222 (321)
T ss_dssp ---------------------------------------------------EEEEECCCSSCCCEEE----ECTTSCEEE
T ss_pred ---------------------------------------------------EEEEEcccCCceeEEE----EcCCCCEEE
Confidence 1124667777787776 899999999
Q ss_pred EecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685 644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (737)
Q Consensus 644 sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~ 715 (737)
+|+.|++|+|||+++++++..|.+|.+.|++++|+|++++|+|++.||+|+|||+.+++++.++.+|.+++.
T Consensus 223 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 34
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-35 Score=319.98 Aligned_cols=186 Identities=16% Similarity=0.201 Sum_probs=158.4
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
..+ .+|..+|++++|+|+ +.+|++|+.||+|++||+.... ....+.+|...|.+++|+| ++.+|++
T Consensus 102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~~----------~~~~l~~h~~~V~~v~~~~-~~~~l~s 167 (410)
T 1vyh_C 102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGD----------FERTLKGHTDSVQDISFDH-SGKLLAS 167 (410)
T ss_dssp CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCC----------CCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc----------EEEEEeccCCcEEEEEEcC-CCCEEEE
Confidence 345 689999999999999 7999999999999999998632 3678889999999999999 6689999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
|+.|++|++||+.+.+. +.....|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus 168 gs~D~~i~iwd~~~~~~-------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp EETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCce-------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence 99999999999987642 3344567889999999997 589999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004685 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 325 (737)
+++..+..+ .+|.. .|.+++|+|++.+|++|+.|+.|++||+.++.....+..+...+.
T Consensus 222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~ 280 (410)
T 1vyh_C 222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280 (410)
T ss_dssp TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEE
Confidence 987654433 22333 599999999999999999999999999999877777777888888
Q ss_pred eeeeccC
Q 004685 326 IMSFTPT 332 (737)
Q Consensus 326 ~~~~~p~ 332 (737)
.++|+|.
T Consensus 281 ~~~~~~~ 287 (410)
T 1vyh_C 281 CISWAPE 287 (410)
T ss_dssp EEEECCS
T ss_pred EEEEcCc
Confidence 8888884
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.9e-35 Score=311.05 Aligned_cols=231 Identities=12% Similarity=0.187 Sum_probs=171.4
Q ss_pred eecccCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEEc----ccCccceEEEEEeeCCC--CCEEEEEE
Q 004685 45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA 114 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~~sp~~~--~~~l~sgs 114 (737)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+. ..|...|.+++|+|+.. +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 4566666667799999999887666552 12567899999999842 35899999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~ 194 (737)
.||.|++||+... +.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++..
T Consensus 93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------- 151 (366)
T 3k26_A 93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV----------- 151 (366)
T ss_dssp TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence 9999999999863 2367788899999999999966789999999999999999876522
Q ss_pred eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCC--CCCCCc------cc
Q 004685 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--SPPPCV------NY 266 (737)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~------~~ 266 (737)
..+.....|...|.+++|+|+ +.+|++++.|+.|++||+++++....+.... .+.... ..
T Consensus 152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 112223467889999999997 6899999999999999999776443332100 000000 00
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..+......+|.. .|.+++|+ +++|++++.|+.|++||+.+.
T Consensus 220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence 0000000112333 69999998 779999999999999999874
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=313.52 Aligned_cols=214 Identities=13% Similarity=0.158 Sum_probs=166.3
Q ss_pred ceeecccCCceEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC-CCCEEEEEECCC
Q 004685 43 ERELEGHQGCVNAISWNSKGS-LLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA 117 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~-~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg 117 (737)
.+.+++|.+.|++++|+|++. ++++|+. |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 345678999999999999986 4556665 99999999999887655545799999999999982 148999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~ 191 (737)
.|++||+.... .++..+.+|...|.++.| +| ++.+|++++.|+.|++||++.+....
T Consensus 91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~------- 153 (357)
T 3i2n_A 91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV------- 153 (357)
T ss_dssp CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS-------
T ss_pred eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc-------
Confidence 99999998643 136778899999999966 45 56799999999999999999875220
Q ss_pred ccceEEEeccCCceeeccCCCC-CccceEEEE----EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685 192 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (737)
..+..... ....+.+++ |+|+ +.+|++++.|+.|++||+++.+.....
T Consensus 154 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~------------ 206 (357)
T 3i2n_A 154 --------------ANMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWET------------ 206 (357)
T ss_dssp --------------EEECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred --------------eeccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeeec------------
Confidence 01111111 134678887 6776 689999999999999999976532211
Q ss_pred cccccccCCCCcccceeEEEEcC---CCCEEEEEeCCCeEEEEEcCC
Q 004685 267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp---~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.+. ..|.+++|+| ++.+|++++.||.|++||+.+
T Consensus 207 ---------~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 207 ---------NIK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp ---------ECS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ---------CCC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 122 2599999999 999999999999999999886
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.5e-35 Score=338.92 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=177.2
Q ss_pred cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
.+....+++|.+.|++|+|+|+ +++|+||+.|++|+|||+.+. .....+ .+|...|.+++|+|+ +.+|++|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg 448 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG 448 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence 4555679999999999999986 479999999999999999763 344556 799999999999999 7999999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.|+.|+|||+.... ....+.+|...|.+++|+| ++.+|++|+.|++|++||+......
T Consensus 449 s~Dg~v~vwd~~~~~----------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~---------- 507 (694)
T 3dm0_A 449 SWDGELRLWDLAAGV----------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKY---------- 507 (694)
T ss_dssp ETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred eCCCcEEEEECCCCc----------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcce----------
Confidence 999999999998632 2567889999999999999 5688899999999999997543210
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
........|...|.+++|+|+. ...+++++.|+.|++||++..+....+
T Consensus 508 ------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------ 557 (694)
T 3dm0_A 508 ------------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------ 557 (694)
T ss_dssp ------------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred ------------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence 0112234577889999999974 258999999999999999876544332
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|.. .|++++|+|++++|++|+.||.|++||+.++
T Consensus 558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 23443 6999999999999999999999999999874
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-36 Score=323.88 Aligned_cols=221 Identities=16% Similarity=0.293 Sum_probs=171.7
Q ss_pred CCceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 50 QGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 50 ~~~V~~l~~s~~g~-~lasg----------s~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
...|.+++|+|+++ +|++| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|+ +.+|++|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHN--NKIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSS--SSCEEEEES
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCC--CCeEEEEcc
Confidence 35789999999987 99999 899999999999875 33333 58899999999999 799999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
||.|++||+...... ......+.+|...|++++|+|+++.+|++++.|+.|++||+.+........
T Consensus 88 dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------- 153 (416)
T 2pm9_A 88 NGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------- 153 (416)
T ss_dssp SSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC--------
T ss_pred CCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc--------
Confidence 999999999862211 123677888999999999999657899999999999999998875210000
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
....+.....|...+.+++|+|+++.+|++++.|+.|++||+++.+.+..+..... ..
T Consensus 154 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~ 211 (416)
T 2pm9_A 154 --------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP--------------NS 211 (416)
T ss_dssp --------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC--------------SS
T ss_pred --------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc--------------cc
Confidence 00111223457788999999998668999999999999999998765544421100 01
Q ss_pred CCcccceeEEEEcCCC-CEEEEEeCCC---eEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g-~~l~~g~~dg---~v~iwd~~~~ 311 (737)
+| ...|.+++|+|++ .+|++++.|+ .|++||+.++
T Consensus 212 ~~-~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 212 GI-KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp CC-CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred cc-CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 11 2369999999997 6899999998 9999998873
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-35 Score=314.47 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=173.5
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+ .+|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence 44599999999999999999999999999999999987 77778 789999999999998 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+..... .....+..|...|.+++|+| ++.+|++++.|+.|++||++..... ..
T Consensus 81 ~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~------- 133 (372)
T 1k8k_C 81 LKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WV------- 133 (372)
T ss_dssp EETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EE-------
T ss_pred CCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------ee-------
Confidence 975321 11334467899999999999 5689999999999999999876521 00
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC-----CCCCCCccccccccccCCCCc
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-----MSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 278 (737)
.......|...|.+++|+|+ +++|++++.|+.|++||++........... .....+...+ .+|.
T Consensus 134 ---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (372)
T 1k8k_C 134 ---CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSSC 202 (372)
T ss_dssp ---EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCCS
T ss_pred ---eeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCCC
Confidence 01112346778999999997 589999999999999998643211100000 0000111111 1233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
. .|.+++|+|++++|++++.|+.|++||+.++
T Consensus 203 ~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 203 G-WVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp S-CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred C-eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 3 6999999999999999999999999998863
No 40
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-36 Score=354.84 Aligned_cols=300 Identities=11% Similarity=0.011 Sum_probs=195.4
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-----------EEEc
Q 004685 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----------HSIE 89 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~-----------~~~~ 89 (737)
..+.+.+++|++|+ +.+.+.+.++. |.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+
T Consensus 72 L~S~s~D~~v~lWd--~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~- 147 (902)
T 2oaj_A 72 LVVINAKDTVYVLS--LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP- 147 (902)
T ss_dssp EEEEETTCEEEEEE--TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS-
T ss_pred EEEEECcCeEEEEE--CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc-
Confidence 34556789999999 44556677775 7789999999999999999999999999999988754 122
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee------------------ccCCCcee
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------------------QCHTRRVK 151 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~------------------~~h~~~v~ 151 (737)
.+|..+|.+++|+|+. +..|++|+.||.| +||++.... ...+ ..|...|+
T Consensus 148 ~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEI----------KQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp SSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEE----------EEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred ccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCce----------EEEEecccCCcCCCcccccccccccCCCeE
Confidence 5688999999999963 5789999999999 999986321 2223 23467899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC--CC--CCC-------------C-ccceEEEecc------------
Q 004685 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--AG--SSH-------------Q-ECRNILLDLR------------ 201 (737)
Q Consensus 152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~--~~--~~~-------------~-~~~~~~~~~~------------ 201 (737)
+++|+| ++.+|++++.||+|++||+++++.+.. .. ..+ . ....+.|...
T Consensus 216 ~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 216 QSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 999999 578999999999999999988764321 00 001 1 0111112100
Q ss_pred --C-----Cceeecc--------------------------C-CCCCccceEEEEEec---------CCCcEEEEEeCCC
Q 004685 202 --C-----GAKRSLA--------------------------D-PPKQTLSLKSCDISS---------TRPHLLLVGGSDA 238 (737)
Q Consensus 202 --~-----~~~~~~~--------------------------~-~~~~~~~v~~i~~sp---------~~~~~l~t~s~Dg 238 (737)
. .....+. . ...+...+.++.+.+ .++..+++++.|+
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 0 0000000 0 001234556666654 1234778888889
Q ss_pred cEEEEECCCCCCccc-------ccCCCCCCCCcc----------------ccccccccCCCCcccceeEEEEcCCCCEEE
Q 004685 239 FARLYDRRMLPPLTS-------CQKRMSPPPCVN----------------YFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~-------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~ 295 (737)
.|++||+.++..... +.....+..++. ......+ .+|.. .+.+++|+|++++|+
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l--~G~~~-~v~sv~~spdg~~la 451 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL--KGGVR-TKRQKLPAEYGTAFI 451 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC--CCSBC-CCCCCCCCSEEEEEE
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc--cCCcC-CCCcccccccCcEEE
Confidence 999999866542211 000000000000 0000011 22332 467788999999999
Q ss_pred EEeCCCeEEEEEcCCCCcce--eee---------ecCCCCeeeeeccCCCCccCCC
Q 004685 296 LSYSGEHVYLMDVNHAGGRA--MRY---------TVGDASKIMSFTPTLNGLELQP 340 (737)
Q Consensus 296 ~g~~dg~v~iwd~~~~~~~~--~~~---------~~~~~~~~~~~~p~~~~~~~~~ 340 (737)
+|+.|++|++||+.++.... .+. ++...+..++|+|+.+.++...
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI 507 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence 99999999999999874221 111 4566788899999876555543
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-34 Score=303.98 Aligned_cols=207 Identities=18% Similarity=0.270 Sum_probs=170.5
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE---EEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH---SIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~---~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
...+|.+.|++++|+|++++|++++ ||.|++||+.+++... .+. ..|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLS 122 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEE
Confidence 3347999999999999999999999 9999999998765322 220 278999999999999 79999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+||+..... .....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.
T Consensus 123 ~~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~------------------ 175 (337)
T 1gxr_A 123 IWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL------------------ 175 (337)
T ss_dssp EEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred EEECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce------------------
Confidence 999986432 12566778999999999999 668999999999999999987652
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
+.....|...+.+++|+|+ +++|++++.|+.|++||+++++.+..+. + ..
T Consensus 176 -------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------------------~-~~ 225 (337)
T 1gxr_A 176 -------VRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHD---------------------F-TS 225 (337)
T ss_dssp -------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE---------------------C-SS
T ss_pred -------eeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeeec---------------------C-CC
Confidence 1222346778999999997 5899999999999999999876443321 1 12
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+.+++|+|++++|++++.++.|++||+.++
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 5999999999999999999999999998763
No 42
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=309.81 Aligned_cols=242 Identities=12% Similarity=0.181 Sum_probs=185.4
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc------------ccC
Q 004685 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGH 92 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~------------~~h 92 (737)
.+..+++|+ ....+....+++|.++|++++|+| ++++||+|+.||.|++||+.+++....+. .+|
T Consensus 21 ~~~~~~v~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLG--LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHT--EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeec--cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 456788888 455567788889999999999999 99999999999999999999876554441 259
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC--cEEEEEeCCC
Q 004685 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDG 170 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg 170 (737)
...|.+++|+|+. +.+|++++.||.|++||+.... ....+ .+...+.++.|+|.+. .++++++.|+
T Consensus 99 ~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 99 RYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTLQ----------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTTE----------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCCc----------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 9999999999953 7899999999999999998632 13333 3788899999998533 4899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP- 249 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~- 249 (737)
.|++||++++... .....|...|.+++|+|++..+|++++.||.|++||++...
T Consensus 167 ~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 167 KVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp SEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred eEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 9999999877532 12235678899999999865579999999999999998765
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+..+........ ........+|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 222 ~~~~~~~~~~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 222 CLITLDQHNGKKS-----QAVESANTAHN-GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp CSEECCTTTTCSC-----CCTTTSSCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccccccccccccc-----eeecccccccc-CceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 2222211100000 00000012233 369999999999999999999999999999854
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.8e-35 Score=336.21 Aligned_cols=249 Identities=13% Similarity=0.126 Sum_probs=203.9
Q ss_pred CCCccccccccccccc------ccccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEEcccC
Q 004685 23 RPDVNHSLQMHSSLVR------RLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGH 92 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~------~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~h 92 (737)
..+.++.|++|+.... ..+....+.+|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+ .+|
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~ 159 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGH 159 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSC
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecC
Confidence 3456889999996444 557788899999999999999999999999987 6888888 56677777 789
Q ss_pred ccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEEEeC
Q 004685 93 SANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~ 168 (737)
...|.+++|+|+ +. +|++++.|+.|++||+... +.+..+..|.. .|.+++|+|+++.+|++++.
T Consensus 160 ~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 160 SQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp SSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 999999999999 45 8999999999999998752 23667788998 99999999953789999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC-C---CCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-P---KQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd 244 (737)
|+.|++||+++++.. ... . .|...|.+++|+ + +.+|++++.|+.|++||
T Consensus 228 dg~i~vwd~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 228 DRKISCFDGKSGEFL-------------------------KYIEDDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWD 280 (615)
T ss_dssp TCCEEEEETTTCCEE-------------------------EECCBTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEE
T ss_pred CCeEEEEECCCCCEe-------------------------EEecccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEE
Confidence 999999999887632 111 2 567889999999 5 68999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004685 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 324 (737)
+++++.+..+.... ......+.++.|. ++.++++++.||.|++||+.+++....+..+...+
T Consensus 281 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 281 VTTSKCVQKWTLDK-----------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp TTTTEEEEEEECCT-----------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred CCCCcEEEEEcCCC-----------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 99876554442210 0112247888885 99999999999999999999877667777788889
Q ss_pred eeeeeccC
Q 004685 325 KIMSFTPT 332 (737)
Q Consensus 325 ~~~~~~p~ 332 (737)
..++| |+
T Consensus 343 ~~~~~-~~ 349 (615)
T 1pgu_A 343 TALTV-NP 349 (615)
T ss_dssp EEEET-TT
T ss_pred EEEEe-cC
Confidence 99999 76
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-33 Score=306.95 Aligned_cols=201 Identities=18% Similarity=0.270 Sum_probs=157.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
.++.|+||++ ++||+|. |++|+|||..+++.+..+. .+|...|++|+|+|+ +.+|++|+.||.|+|||+...
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence 4678999975 5777775 8999999999998877652 367788999999999 799999999999999999863
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
+.+..+.+|...+.++.+++ .+|++|+.|+.+++||....... +..
T Consensus 180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~ 225 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT 225 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence 23678889999999998854 78999999999999998876421 223
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
...|...+..+.|+|+ +.++++++.|+.+++||...++...... .. . ..+. ..|.+++|+|+
T Consensus 226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~~---------~~-----~--~~~~-~~V~~~~~~p~ 287 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QT-----F--TQHQ-GAVKAVAWCPW 287 (420)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCCS---------EE-----E--CCCS-SCEEEEEECTT
T ss_pred ecccccceeeeeecCC-CCeeeeeeccccceEEeeccccccceee---------ee-----e--cccC-CceeeeeeCCC
Confidence 3457788999999997 6899999999999999998765321110 00 0 1222 26999999996
Q ss_pred CC-EEEEE--eCCCeEEEEEcCCC
Q 004685 291 GE-EVLLS--YSGEHVYLMDVNHA 311 (737)
Q Consensus 291 g~-~l~~g--~~dg~v~iwd~~~~ 311 (737)
+. .++++ +.|++|++||+.++
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTT
T ss_pred cccEEEEEeecCCCEEEEEeCCcc
Confidence 65 44444 35999999998874
No 45
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-33 Score=297.95 Aligned_cols=171 Identities=13% Similarity=0.202 Sum_probs=140.1
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
+....+ .+|...|.+++|+|+ +.+|++|+.||+|++||+.... .+..+..|...|.+++|+| ++.+
T Consensus 46 ~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~~----------~~~~~~~~~~~v~~~~~s~-~~~~ 111 (340)
T 1got_B 46 RTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTTN----------KVHAIPLRSSWVMTCAYAP-SGNY 111 (340)
T ss_dssp CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTCC----------EEEEEECSSSCEEEEEECT-TSSE
T ss_pred hhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCCC----------cceEeecCCccEEEEEECC-CCCE
Confidence 345667 799999999999999 7999999999999999987632 3667788999999999999 6689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
|++|+.|+.|++||+.+.... .........|...+.++.|+++ ..+++++.|+.|++
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~ 168 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCAL 168 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEE
T ss_pred EEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEE
Confidence 999999999999999875421 0112223357788999999986 36999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
||+++++.+..+ .+|.. .|.+++|+|++++|++|+.|+.|++||+.++
T Consensus 169 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~ 216 (340)
T 1got_B 169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999987654433 22333 5999999999999999999999999998763
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9e-34 Score=298.63 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=169.2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE---cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+ ..+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEEC
Confidence 467889999999985 6889999999999999988754332 2589999999999999 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
.++ +++..+.+|...|++++|+|++..+|++++.|++|++||+++++...
T Consensus 157 ~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------- 206 (344)
T 4gqb_B 157 AQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-------------------- 206 (344)
T ss_dssp TTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE--------------------
T ss_pred CCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee--------------------
Confidence 863 33778899999999999999777899999999999999999876431
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
......+...+.+++|+|+++++|++|+.|+.|++||+++++.+..+ .+|.. .|++
T Consensus 207 ---~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~~ 262 (344)
T 4gqb_B 207 ---QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVTG 262 (344)
T ss_dssp ---ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEEE
T ss_pred ---eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEEE
Confidence 11112334568899999987889999999999999999988765544 22433 5999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEcCC
Q 004685 285 VTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 285 v~~sp~g-~~l~~g~~dg~v~iwd~~~ 310 (737)
++|+|++ ++|++|+.|++|++||+.+
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 9999998 5789999999999999776
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=290.86 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=156.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
.+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+ +++|++|+.||+|++||+..+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~--- 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 99 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT---
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc---
Confidence 35789999876 777764 8999999999999887762 367788999999999 799999999999999999863
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
+.+..+.+|...+.++.+.+ .++++++.++.+++|+....... +..
T Consensus 100 -------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~ 145 (318)
T 4ggc_A 100 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT 145 (318)
T ss_dssp -------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------------------EEE
Confidence 23677889999988877653 78999999999999998876421 222
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
...|...+..+.+++. +.++++++.|+.|++||+++++........ .......|..++++|+
T Consensus 146 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQT-----------------FTQHQGAVKAVAWCPW 207 (318)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSEE-----------------ECCCCSCEEEEEECTT
T ss_pred EcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccceee-----------------ecccCCceEEEEecCC
Confidence 3356778999999997 589999999999999999876533221100 0111225999999997
Q ss_pred CCEEE---EEeCCCeEEEEEcCCC
Q 004685 291 GEEVL---LSYSGEHVYLMDVNHA 311 (737)
Q Consensus 291 g~~l~---~g~~dg~v~iwd~~~~ 311 (737)
+..++ +++.++.|++||....
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTTC
T ss_pred CCcEEEEEecCCCCEEEEEecccc
Confidence 66443 4556899999998763
No 48
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-33 Score=290.03 Aligned_cols=186 Identities=14% Similarity=0.181 Sum_probs=141.6
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+..+ .+|..+|.+++|+|...+.+|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 356789999999999999999999999999999999974 3567777 7999999999998642268999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
+||+..... ..+..+..|...|.+++|+|+. +.+|++++.|+.|++||++......
T Consensus 81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--------------- 137 (297)
T 2pm7_B 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--------------- 137 (297)
T ss_dssp EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---------------
T ss_pred EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---------------
Confidence 999985321 2356677899999999999952 6799999999999999998753110
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
......|...|.+++|+|+.... ++ .
T Consensus 138 --------~~~~~~h~~~v~~~~~~p~~~~~------~~--------~-------------------------------- 163 (297)
T 2pm7_B 138 --------PIIIDAHAIGVNSASWAPATIEE------DG--------E-------------------------------- 163 (297)
T ss_dssp --------CEEEECCSSCEEEEEECCCC----------------------------------------------------
T ss_pred --------eeeeecccCccceEeecCCcccc------cc--------c--------------------------------
Confidence 01112456678888888852100 00 0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....+++++|++|+.|+.|++||+.++
T Consensus 164 -----~~~~~~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 164 -----HNGTKESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETT
T ss_pred -----CCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence 001235789999999999999998763
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-34 Score=308.57 Aligned_cols=190 Identities=15% Similarity=0.196 Sum_probs=150.7
Q ss_pred cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE
Q 004685 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 152 (737)
Q Consensus 73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 152 (737)
.+..|+.....+...+ .+|...|++++|+|+ +.+|++|+.|++|+|||+.... ....+..|...|.+
T Consensus 47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~~----------~~~~~~~h~~~v~~ 113 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTSQ----------KTHAIKLHCPWVME 113 (380)
T ss_dssp GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTE----------EEEEEECCCTTCCC
T ss_pred cccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc----------cceEEecCCCCEEE
Confidence 3445666677777888 899999999999999 7999999999999999997632 26778889999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (737)
Q Consensus 153 l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 232 (737)
++|+| ++.+|++|+.|+.|++||+....... +.........+|...+.++.|+|+++..|+
T Consensus 114 ~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 114 CAFAP-NGQSVACGGLDSACSIFNLSSQADRD------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp CEECT-TSSEEEECCSSSCCEEEECCCCSSCC------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred EEECC-CCCEEEEeeCCCcEEEEECCCCcccc------------------CCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 99999 66899999999999999997653210 011112334578888999999998777899
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 004685 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|+.|+.|++||+++++.+..+.... ..+|.. .|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~~~~~---------------~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIFGSEF---------------PSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEECCCS---------------SSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred EECCCCcEEEEEcCCCcEEEEeeccc---------------CCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999999887554432110 022333 599999987 889999999999999999875
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-33 Score=303.11 Aligned_cols=247 Identities=13% Similarity=0.107 Sum_probs=185.8
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
...++.+++|+ ..+.+....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+ .+|...|.+++|+|
T Consensus 74 ~~~d~~v~i~d--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~ 149 (420)
T 3vl1_A 74 ARLDGHDFLFN--TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFP 149 (420)
T ss_dssp EEETTEEEEEE--CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECT
T ss_pred EEcCCcEEEEE--ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECC
Confidence 45578899999 4444555666666 45555678999999999999999999999999888777 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ +.+|++|+.|+.|++||+.... .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++..
T Consensus 150 ~--~~~l~s~s~d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 150 S--GEALISSSQDMQLKIWSVKDGS----------NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp T--SSEEEEEETTSEEEEEETTTCC----------CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred C--CCEEEEEeCCCeEEEEeCCCCc----------CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCcee
Confidence 9 7999999999999999998632 3677889999999999999 5689999999999999999987643
Q ss_pred CCCCC--CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004685 184 PPAGS--SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (737)
Q Consensus 184 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (737)
..... .+......+.-..... . .....+...+.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------ 286 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTD-R--QLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLP------ 286 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCC-S--SCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred EEeecCCCCCCCccEEEEecCCc-c--eeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcc------
Confidence 11110 0000000000000000 0 000112356677788886 6899999999999999999876543331
Q ss_pred CCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|. ..|.+++|+|++. +|++|+.||.|++||+.++
T Consensus 287 -------------~~~~-~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 287 -------------SKFT-CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp -------------CTTS-SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred -------------cccC-CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 1122 2699999999999 9999999999999999874
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-34 Score=302.63 Aligned_cols=207 Identities=9% Similarity=0.076 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCeE----------EEEEcccCccceEEEEEeeCCCCCEEEE
Q 004685 50 QGCVNAISWNSKGSLLISGSDD-------THINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~d-------g~V~vwd~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~~l~s 112 (737)
..||+|++|+||+++|++|+.+ +.|++|++..... ...+ ..|...|.++++++ +.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence 4689999999999999999754 3599999875431 1123 57888898887754 45665
Q ss_pred E-----------ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE--EEeCCCcEEEEEcCC
Q 004685 113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ 179 (737)
Q Consensus 113 g-----------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~--s~s~Dg~I~vwdl~~ 179 (737)
| +.|+.+++|++........... .........+...+.+++|+| ++++++ +++.|++|++||+.+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-SVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-EECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEee-eeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence 5 3578899999875432110000 000111233456789999999 456654 445789999999988
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (737)
++.. . .+ .|...|.+++|+|+ ++++++++.+ .+++|+..++..+....
T Consensus 167 ~~~~--------------~--------~~----~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~~~~---- 214 (365)
T 4h5i_A 167 LTEK--------------F--------EI----ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIARKT---- 214 (365)
T ss_dssp TEEE--------------E--------EE----ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEEEEC----
T ss_pred CcEE--------------E--------Ee----CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCcceeeee----
Confidence 7522 0 01 24567999999997 5899888854 56677766654322110
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC----eEEEEEcCC
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH 310 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg----~v~iwd~~~ 310 (737)
..+|. ..|.+++|+|++.++++++.|+ .+++|++..
T Consensus 215 --------------~~~~~-~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 215 --------------DFDKN-WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp --------------CCCTT-EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred --------------cCCCC-CCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 01222 2599999999999999999876 577777665
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-33 Score=307.39 Aligned_cols=209 Identities=22% Similarity=0.350 Sum_probs=170.9
Q ss_pred cccceeecccCCce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685 40 LSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 40 ~~~~~~l~~H~~~V-~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
.+....+.+|.+.| .|+ ++++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++ ++|++|+.||.
T Consensus 108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~ 180 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRT 180 (445)
T ss_dssp CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSC
T ss_pred cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCe
Confidence 45667899999875 554 456899999999999999999999999988 79999999999973 59999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
|++||+..+ +.+..+.+|...|.++.|++ ..+++|+.||.|++||+.+++..
T Consensus 181 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~--------------- 232 (445)
T 2ovr_B 181 LKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL--------------- 232 (445)
T ss_dssp EEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE---------------
T ss_pred EEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE---------------
Confidence 999999863 23677889999999999964 67999999999999999876521
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
.....|...+.+++|+ +..+++++.|+.|++||+++++.+..+. +|.
T Consensus 233 ----------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~ 279 (445)
T 2ovr_B 233 ----------HVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTLQ--------------------GHT 279 (445)
T ss_dssp ----------EEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEEC--------------------CCS
T ss_pred ----------EEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEec--------------------CCC
Confidence 1223467789999983 4789999999999999998876544431 233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 319 (737)
. .|.+++| ++.++++++.|+.|++||+.+++.......
T Consensus 280 ~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 280 N-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp S-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred C-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 3 5999999 889999999999999999998765444433
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5e-33 Score=306.51 Aligned_cols=229 Identities=19% Similarity=0.345 Sum_probs=174.9
Q ss_pred ccceeecccCCce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 41 SQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 41 ~~~~~l~~H~~~V-~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
....++++|...| .++.+ ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+ + +|++|+.||+|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i 185 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCE
Confidence 3456889999885 66666 5689999999999999999999999999 799999999999997 4 99999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
++||+.... .+..+.+|...|.+++|++ .++.++++++.|+.|++||++............. .....
T Consensus 186 ~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~ 253 (464)
T 3v7d_B 186 RVWDIKKGC----------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVF 253 (464)
T ss_dssp EEEETTTTE----------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--SSEEE
T ss_pred EEEECCCCc----------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--cceEe
Confidence 999998632 3677888999999999995 2558999999999999999998764422211111 01111
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
.........+.....|...+.++. ++ ++++++++.|+.|++||+++++.+..+ .+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~ 310 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHT 310 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCS
T ss_pred eccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence 111111112233445667777764 43 579999999999999999987655443 2233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
. .|.+++|+|++++|++|+.||.|++||+.++
T Consensus 311 ~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 311 D-RIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp S-CEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred C-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 3 5999999999999999999999999998873
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=321.21 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=175.8
Q ss_pred CCCCCccccccccccccccccc--ceeecccCCceEEEEEcCC------CCEEEEEeCCCcEEEEECCCCeE--------
Q 004685 21 DTRPDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL-------- 84 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~H~~~V~~l~~s~~------g~~lasgs~dg~V~vwd~~~~~~-------- 84 (737)
..+.+.+++|++|+........ ..++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 3567889999999954433221 2457788899999999996 57999999999999999987642
Q ss_pred ---EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEE--EEecCC
Q 004685 85 ---LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGN 159 (737)
Q Consensus 85 ---~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~ 159 (737)
...+ .+|...|++++|+|+ ..|++|+.||+|++||++... .+...+.+|...|+++ .|+| +
T Consensus 256 ~~p~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~ 321 (524)
T 2j04_B 256 EKPSLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-F 321 (524)
T ss_dssp CSCSEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-T
T ss_pred cCceEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-C
Confidence 1245 689999999999986 589999999999999998532 2245678999999999 4566 5
Q ss_pred C-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685 160 P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 160 ~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+ ++|++|+.|++|++||+++++.. ..+... .....+.+++|+|+ ++.+++++.|+
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~-----------~~~~~~------------~~~~~v~~v~fsp~-~~~l~s~~~d~ 377 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATT-----------KTTVSR------------FRGSNLVPVVYCPQ-IYSYIYSDGAS 377 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHH-----------CEEEEE------------CSCCSCCCEEEETT-TTEEEEECSSS
T ss_pred CCeEEEEeccCCeEEEEECCCCCcc-----------cccccc------------cccCcccceEeCCC-cCeEEEeCCCC
Confidence 4 89999999999999999876522 111000 00124688999997 57899999999
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.|++||++.+..+..+ .+|.. .|++|+|+|+|++|++|+.|++|++||+..
T Consensus 378 tv~lwd~~~~~~~~~l--------------------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 378 SLRAVPSRAAFAVHPL--------------------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEEETTCTTCCEEE--------------------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cEEEEECcccccceee--------------------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 9999999976543322 22443 699999999999999999999999999754
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.3e-33 Score=329.36 Aligned_cols=213 Identities=14% Similarity=0.246 Sum_probs=182.3
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
++..++|.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ ..|..+|.+++|+|+ +.+|++|+.||.|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i 79 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFRI 79 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCeE
Confidence 5667889999999999999999999999999999999999999999998 789999999999999 7999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
++||+..+. .+..+.+|...|++++|+| ++.+|++++.||.|++||+.++...
T Consensus 80 ~vw~~~~~~----------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~---------------- 132 (814)
T 3mkq_A 80 RVFNYNTGE----------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------- 132 (814)
T ss_dssp EEEETTTCC----------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE----------------
T ss_pred EEEECCCCc----------EEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE----------------
Confidence 999998632 3677888999999999999 5678999999999999999876311
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
......|...+.+++|+|.++..|++++.||.|++||++.......+. .+..
T Consensus 133 --------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------------------~~~~ 184 (814)
T 3mkq_A 133 --------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--------------------TGQE 184 (814)
T ss_dssp --------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE--------------------CCCT
T ss_pred --------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe--------------------cCCC
Confidence 112234667899999999546899999999999999998765443331 1222
Q ss_pred cceeEEEEcC--CCCEEEEEeCCCeEEEEEcCC
Q 004685 280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 280 ~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~ 310 (737)
..+.+++|+| ++.+|++++.||.|++||+.+
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 2599999999 999999999999999999876
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-33 Score=300.89 Aligned_cols=204 Identities=19% Similarity=0.285 Sum_probs=162.4
Q ss_pred eecccCCc--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685 45 ELEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 45 ~l~~H~~~--V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
...+|... +.+++|++ ..+++++.|+.|++||+.+++....+...|...|.+++|+|+ +.+|++|+.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEE
Confidence 34467655 44566664 568888899999999999999888775558999999999998 7999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
|+... +.+..+.+|...|.+++|++ ++|++++.||.|++||++.....
T Consensus 162 d~~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~------------------- 209 (401)
T 4aez_A 162 DVESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ------------------- 209 (401)
T ss_dssp ETTTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE-------------------
T ss_pred ECcCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce-------------------
Confidence 99863 23677889999999999954 68999999999999999854321
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
+.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+. +|.. .|
T Consensus 210 -----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------------------~~~~-~v 262 (401)
T 4aez_A 210 -----IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKT--------------------NHNA-AV 262 (401)
T ss_dssp -----EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEEC--------------------CCSS-CC
T ss_pred -----eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEec--------------------CCcc-eE
Confidence 2223356789999999996 6899999999999999999866543331 1222 59
Q ss_pred eEEEEcCCCCEEE-EEe--CCCeEEEEEcCCC
Q 004685 283 THVTFSPNGEEVL-LSY--SGEHVYLMDVNHA 311 (737)
Q Consensus 283 ~~v~~sp~g~~l~-~g~--~dg~v~iwd~~~~ 311 (737)
.+++|+|++..++ +++ .|+.|++||+.++
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 9999999775554 443 5999999998874
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-34 Score=307.98 Aligned_cols=228 Identities=12% Similarity=0.098 Sum_probs=167.2
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
++.|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+ .+|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEEEE
Confidence 4457789999999999999999999999999999988 667777 789999999999999 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+..... ..+...+..|...|.+++|+| ++.+|++++.|+.|++||++......
T Consensus 84 ~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~------------------- 136 (377)
T 3dwl_C 84 KRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW------------------- 136 (377)
T ss_dssp -----C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC-------------------
T ss_pred cCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce-------------------
Confidence 986431 123566778999999999999 66889999999999999998875210
Q ss_pred ceeeccCCCC-CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685 204 AKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 204 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
....... |...|.+++|+|+ +++|++++.|+.|++||++.............. ........... .+|.. .|
T Consensus 137 ---~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~-~v 208 (377)
T 3dwl_C 137 ---VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG-SRLPFNTVCAE--YPSGG-WV 208 (377)
T ss_dssp ---CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC-SCCCEEEEEEC--CCCSS-SE
T ss_pred ---eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccc-cccchhhhhhc--ccCCc-eE
Confidence 0111122 6789999999997 589999999999999999754422111000000 00000000000 13333 69
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+++|+|++++|++++.||.|++||+.++
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999999999999874
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.5e-33 Score=291.61 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=166.4
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcE
Q 004685 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEV 119 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I 119 (737)
....+|.+.|++++|+|++++|++|+.|+.|+|||+.+++ ....+ ..|...|.+++|+|+ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCeE
Confidence 3345899999999999999999999999999999998876 33444 579999999999999 79 99999999999
Q ss_pred EEEec-CCCCCCCCCCCCCCCceeecc--CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC---------CCCCCCCC
Q 004685 120 RLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPAG 187 (737)
Q Consensus 120 ~iwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~---------~~~~~~~~ 187 (737)
++||+ .... ...+.+ |...|.+++|+| +.+|++++.|+.|++||++. .+..
T Consensus 82 ~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---- 144 (342)
T 1yfq_A 82 LKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---- 144 (342)
T ss_dssp EEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS----
T ss_pred EEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee----
Confidence 99999 7532 466777 999999999999 57899999999999999986 3321
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccc
Q 004685 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 266 (737)
.... +...+.+++|+|+ .+++++.|+.|++||++. ........
T Consensus 145 ---------------------~~~~-~~~~v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~----------- 188 (342)
T 1yfq_A 145 ---------------------NNTK-VKNKIFTMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTIE----------- 188 (342)
T ss_dssp ---------------------SSSS-SCCCEEEEEECSS---EEEEEESTTEEEEEESSCCTTCCCEEE-----------
T ss_pred ---------------------eEEe-eCCceEEEEecCC---cEEEEeCCCeEEEEECCccccccceee-----------
Confidence 1112 5678999999985 299999999999999987 43211100
Q ss_pred cccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685 267 FCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
...+ ...|.+++|+| ++++|++++.||.|++|++...
T Consensus 189 -------~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 189 -------ESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -------ECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -------ecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 0112 22599999999 9999999999999999998874
No 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5e-34 Score=337.42 Aligned_cols=252 Identities=15% Similarity=0.188 Sum_probs=213.4
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
...++.|++|+ ..+.+...++.+|.++|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus 31 ~~~~g~v~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~ 107 (814)
T 3mkq_A 31 TLYSGRVEIWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP 107 (814)
T ss_dssp EETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred EeCCCEEEEEE--CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC
Confidence 34578999999 5567788899999999999999999999999999999999999999999988 78999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
+ +.+|++++.||.|++||+.... .....+.+|...|.+++|+|.++.+|++++.||.|++||+..+...
T Consensus 108 ~--~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 108 T--KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp S--SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred C--CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 9 7999999999999999998532 2256778899999999999966689999999999999999876532
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004685 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (737)
.. ....+...+.+++|+| + +.++++++.||.|++||+++++.+..+.
T Consensus 177 -----------~~-------------~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~------ 225 (814)
T 3mkq_A 177 -----------FT-------------LTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLE------ 225 (814)
T ss_dssp -----------EE-------------EECCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEEE------
T ss_pred -----------eE-------------EecCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEc------
Confidence 00 0112346788999998 6 5799999999999999998776443331
Q ss_pred CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
+|.. .|.+++|+|++.+|++++.||.|++||+.++........+...+..++|+|+...
T Consensus 226 --------------~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 226 --------------GHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp --------------CCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred --------------CCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 2222 5999999999999999999999999999998877777777888999999998764
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-33 Score=307.41 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=166.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
.+++++|+|++++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+ +.+|++|+.||.|++||+....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--- 130 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFNL--- 130 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSCE---
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCcc---
Confidence 4558999999999999999999999999988766555 344 44455567888 7999999999999999988532
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
....+.+|...|++++|+| ++.+|++++.|+.|++||+++++.+ ...
T Consensus 131 -------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~~ 177 (420)
T 3vl1_A 131 -------QREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-------------------------RTL 177 (420)
T ss_dssp -------EEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-------------------------EEE
T ss_pred -------eeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-------------------------eEE
Confidence 2556678999999999999 5689999999999999999887632 112
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc---cccCCCCcccceeEEEEc
Q 004685 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM---HLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~v~~s 288 (737)
..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.........+...... ...........+.+++|+
T Consensus 178 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 178 IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 357789999999997 6899999999999999999887766654322111111100000 000000011247778889
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Q 004685 289 PNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|++++|++|+.||.|++||+.++
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999874
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-33 Score=293.28 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=117.9
Q ss_pred eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i 121 (737)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+ .+|..+|.+++|+|..++.+|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3467899999999999999999999999999999998775 45667 79999999999986311689999999999999
Q ss_pred EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
||++.... .....+.+|...|.+++|+|+. +.+|++|+.|+.|++||++.....
T Consensus 86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~----------------- 140 (316)
T 3bg1_A 86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW----------------- 140 (316)
T ss_dssp ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence 99985321 2356677899999999999953 679999999999999999865310
Q ss_pred cCCceeeccCCCCCccceEEEEEecC
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISST 226 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (737)
........|...+.+++|+|+
T Consensus 141 -----~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 141 -----EVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp -----EECCBTTSSSSCBCCCEECCC
T ss_pred -----ceeeeeccccCCcceEEEccc
Confidence 012233456778888999986
No 62
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=292.30 Aligned_cols=175 Identities=20% Similarity=0.209 Sum_probs=137.5
Q ss_pred eEEEEEcccCcc-ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004685 83 KLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (737)
Q Consensus 83 ~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 161 (737)
+++..+ .+|.. .|.+++|+|+ +.+|++|+.|++|+|||+....... ......+|...|.+++|+| ++.
T Consensus 6 ~~~~~~-~~h~~~~v~~l~~sp~--g~~las~~~D~~i~iw~~~~~~~~~-------~~~~~~~h~~~v~~~~~sp-~g~ 74 (345)
T 3fm0_A 6 VLLGRV-PAHPDSRCWFLAWNPA--GTLLASCGGDRRIRIWGTEGDSWIC-------KSVLSEGHQRTVRKVAWSP-CGN 74 (345)
T ss_dssp EEEEEE-CCSTTSCEEEEEECTT--SSCEEEEETTSCEEEEEEETTEEEE-------EEEECSSCSSCEEEEEECT-TSS
T ss_pred EEeeee-cCCCCCcEEEEEECCC--CCEEEEEcCCCeEEEEEcCCCccee-------eeeeccccCCcEEEEEECC-CCC
Confidence 456677 68887 9999999999 7999999999999999987532110 0123368999999999999 668
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (737)
Q Consensus 162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~ 241 (737)
+|++|+.|+.|++||+..... ..+....+|...|.+++|+|+ +++|++|+.|+.|+
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~ 130 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDF-----------------------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVW 130 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-E-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred EEEEEECCCcEEEEEccCCCe-----------------------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEE
Confidence 999999999999999876531 112334568889999999997 68999999999999
Q ss_pred EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+||++.......+ .. + .+|.. .|.+++|+|++.+|++|+.|+.|++||+.+
T Consensus 131 iwd~~~~~~~~~~----------~~-----~--~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 131 VWEVDEEDEYECV----------SV-----L--NSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp EEEECTTSCEEEE----------EE-----E--CCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred EEECCCCCCeEEE----------EE-----e--cCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence 9999865422111 00 1 22333 599999999999999999999999999765
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=298.58 Aligned_cols=233 Identities=15% Similarity=0.266 Sum_probs=166.9
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEcccCc------------cceEEEEEeeC
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE 104 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----------~~~~~~~~h~------------~~V~~v~~sp~ 104 (737)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+ .+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 467899999999999999999999999999999876 46677 6898 88999999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCC---------------CCCCCC--------------Ccee-eccCCCceeEEE
Q 004685 105 TSDELVVSGAGDAEVRLFNLSRFSGRGL---------------DDNAIT--------------PSAL-YQCHTRRVKKLA 154 (737)
Q Consensus 105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~---------------~~~~~~--------------~~~~-~~~h~~~v~~l~ 154 (737)
.+..+|++++.|+.|++||+........ ...... +... ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 3227999999999999999875221000 000000 0011 367999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE
Q 004685 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 234 (737)
Q Consensus 155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~ 234 (737)
|+| ++.+|++| .|+.|++||++..... ..+.... ......|...|.+++|+|+++++|++|
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~------~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIK------PANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECC------CSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeecc------cccccccCcceEEEEECCCCCcEEEEE
Confidence 999 66888888 7999999999843211 0111110 012345778899999999854899999
Q ss_pred eCCCcEEEEECCCCCC----cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 235 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 235 s~Dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+.|+.|++||+++++. +..+.....+. ....+ .+|. ..|.+++|+|+|++|++++. +.|++||+.+
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPS-NRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCcc-ccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 9999999999998764 22222111000 00000 0011 25999999999999999999 9999999986
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-32 Score=290.36 Aligned_cols=174 Identities=15% Similarity=0.211 Sum_probs=138.8
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
+....+ .+|...|++++|+|+ +.+|++|+.||+|++||..... ....+..|...|.+++|+| ++.+
T Consensus 55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~~----------~~~~~~~~~~~v~~~~~sp-~g~~ 120 (354)
T 2pbi_B 55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTTN----------KEHAVTMPCTWVMACAYAP-SGCA 120 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCEEEECT-TSSE
T ss_pred EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCCC----------cceEEecCCCCEEEEEECC-CCCE
Confidence 445667 799999999999999 7999999999999999987532 2566777889999999999 6689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
+++++.|+.+++|++........ . ........|...|.+++|+|+ +..|++++.|+.|++
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~-----~--------------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENM-----A--------------AKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL 180 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCS-----G--------------GGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred EEEeeCCCCEEEEEEeccccccc-----c--------------ccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence 99999999999999876532100 0 001112246788999999997 579999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEEeCCCeEEEEEcCCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
||+++++.+..+ .+|.. .|.+++|+| +|.+|++|+.||.|++||+.++
T Consensus 181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999987655443 22333 599999987 5789999999999999998874
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-32 Score=298.51 Aligned_cols=198 Identities=14% Similarity=0.294 Sum_probs=163.9
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
..+|...|.|++| ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++| + +.+|++|+.||.|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence 3457778998887 7899999999999999999999999988 799999999999 4 6899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
.+. .+..+.+|...|.+++|++ .++++|+.||.|++||++++...
T Consensus 202 ~~~----------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~---------------------- 246 (435)
T 1p22_A 202 TGE----------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI---------------------- 246 (435)
T ss_dssp SCC----------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred CCc----------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence 642 3677889999999999964 58999999999999999876532
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
........|...|.+++|+ ++++++|+.|+.|++||+++++.+..+. +|.. .|.++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------~~~~-~v~~~ 302 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLN--------------------GHKR-GIACL 302 (435)
T ss_dssp EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS-CEEEE
T ss_pred eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEc--------------------CCCC-cEEEE
Confidence 0112234567889999994 4699999999999999999876554432 2332 58888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 286 TFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 286 ~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+| ++.+|++|+.||.|++||+.++
T Consensus 303 ~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 303 QY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTC
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCCC
Confidence 88 5789999999999999998874
No 66
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-32 Score=288.71 Aligned_cols=236 Identities=13% Similarity=0.132 Sum_probs=179.1
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
...+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++ +....+ .+|...|.+++|+|..++.+|++|+.||.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 3567899999999999999999999999999999999876 456666 68999999999999311689999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
|++||+........ .....++..+..|...|.+++|+|+. +.+|++++.||.|++||+++.+....... ....
T Consensus 83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~ 156 (351)
T 3f3f_A 83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM 156 (351)
T ss_dssp EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence 99999986432210 11123466778899999999999942 68999999999999999998775421100 0000
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
. ........+...+.+++|+|+ .+.++++++.|+.+.+|+.......... . + .
T Consensus 157 ~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~--~ 211 (351)
T 3f3f_A 157 K-------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-----------K-----L--P 211 (351)
T ss_dssp E-------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-----------E-----C--C
T ss_pred c-------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-----------e-----c--C
Confidence 0 001122356778999999996 3689999999999988887665421110 0 0 2
Q ss_pred CCcccceeEEEEcCCC----CEEEEEeCCCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g----~~l~~g~~dg~v~iwd~~~~ 311 (737)
+|.. .|++++|+|++ .+|++++.||.|++||+..+
T Consensus 212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 2333 69999999998 89999999999999999874
No 67
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-33 Score=296.53 Aligned_cols=198 Identities=12% Similarity=0.141 Sum_probs=124.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC------CCcEEEEecCCCC
Q 004685 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFS 128 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~iwd~~~~~ 128 (737)
.+.+.+++.++. ++.+.....|++.... . ..|...|.+++|+|+ |.+|++|+. |+.|++|+.....
T Consensus 10 g~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p-~~H~~~V~~v~fSpD--G~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYFQ-SNGSSKGSAWGRPVTA----P-ACMEVQIGAVRYRRD--GALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSS--SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEEe-cCCCccccccCCCCCC----c-ccccCCEEEEEECCC--CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 455666555544 4446778999976432 2 469999999999999 899999997 7789999887543
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
... ........|...|.+++|+| ++. +++++.||+|++||+.+++.... ..
T Consensus 82 ~~~------~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~---------------------~~ 132 (357)
T 4g56_B 82 PNE------SLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLV---------------------NK 132 (357)
T ss_dssp -CG------GGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CC---------------------CC
T ss_pred cce------eEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEE---------------------Ee
Confidence 221 12344557889999999999 444 55788899999999988763310 01
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
.....|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+ .+|.. .|++++|+
T Consensus 133 ~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------~~h~~-~v~~v~~s 190 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSY--------------------NAHSS-EVNCVAAC 190 (357)
T ss_dssp EEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEEC
T ss_pred eccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------------------cCCCC-CEEEEEEc
Confidence 112357789999999997 689999999999999999987655443 22333 59999999
Q ss_pred CCCC-EEEEEeCCCeEEEEEcCCC
Q 004685 289 PNGE-EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 289 p~g~-~l~~g~~dg~v~iwd~~~~ 311 (737)
|++. ++++++.|+.|++||+.++
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSS
T ss_pred cCCCceeeeeccCCceEEEECCCC
Confidence 9875 7889999999999998874
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=291.00 Aligned_cols=212 Identities=16% Similarity=0.180 Sum_probs=164.9
Q ss_pred ccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEEcccCccceEEEEEeeCCCCCEEE
Q 004685 37 VRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVV 111 (737)
Q Consensus 37 ~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~-~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~ 111 (737)
....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+ +.+|+
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~ 102 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVF 102 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEE
Confidence 4566778889999999999999998 69999999999999999997 5555 555 789999999999998 79999
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE--ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (737)
Q Consensus 112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~ 189 (737)
+++.||.|++||+.... ...+..|...|.+++| +| ++.+|++++.|+.|++||+++++..
T Consensus 103 s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~------ 164 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM------ 164 (368)
T ss_dssp EEETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS------
T ss_pred EEcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE------
Confidence 99999999999998632 3346679999999999 77 5688999999999999999987643
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (737)
.. +. ....+.++.+.+ ..+++++.++.+++|+++.........
T Consensus 165 -----~~-----------~~----~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------- 207 (368)
T 3mmy_A 165 -----MV-----------LQ----LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRI-------------- 207 (368)
T ss_dssp -----EE-----------EE----CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEEC--------------
T ss_pred -----EE-----------Ee----cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhc--------------
Confidence 00 00 112456666664 478888899999999998654221110
Q ss_pred ccccCCCCcccceeEEEEcCCCCE----EEEEeCCCeEEEEEcCCC
Q 004685 270 MHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~----l~~g~~dg~v~iwd~~~~ 311 (737)
.......+.++++.++... +++++.||.|++||+...
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 208 -----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 0011113566666665554 999999999999999874
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-32 Score=286.89 Aligned_cols=228 Identities=15% Similarity=0.220 Sum_probs=191.7
Q ss_pred cCCCCCcccccccccccccc---cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685 20 TDTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V 96 (737)
+..+.+.++++++|+..... ..+..++++|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v 110 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDV 110 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcE
Confidence 34567789999999854322 3457789999999999999999999999999999999999999999988 7999999
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-----CCcEEEEEeCCCc
Q 004685 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGT 171 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~~l~s~s~Dg~ 171 (737)
.+++|+|+ +.+|++|+.|++|++||++. ..+..+.+|...|.++.|.|. ++.++++++.|+.
T Consensus 111 ~~~~~~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~ 177 (319)
T 3frx_A 111 MSVDIDKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177 (319)
T ss_dssp EEEEECTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred EEEEEcCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence 99999999 79999999999999999973 236778899999999999984 2348999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
|++||++..+. ......|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+
T Consensus 178 i~~wd~~~~~~-------------------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 178 VKAWNLNQFQI-------------------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEETTTTEE-------------------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEECCcchh-------------------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999987642 1223457789999999997 689999999999999999987654
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
..+. .+ ..|.+++|+|++.+|++++.+ .+++|++..
T Consensus 232 ~~~~--------------------~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 232 YTLS--------------------AQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp EEEE--------------------CC--SCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred EEec--------------------CC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 4331 11 159999999999998887765 699999876
No 70
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-32 Score=286.17 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=164.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
|.++|.+++|+|+|++++++..++.+.+|+.......... .+|...|.+++|+|+ +.+|++++ ||.|++||+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999988888877776655544444 479999999999999 79999998 9999999998643
Q ss_pred CCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.. .....+. .|...|.+++|+| ++++|++++.|+.|++||+..++..
T Consensus 84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~----------------------- 132 (337)
T 1gxr_A 84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR----------------------- 132 (337)
T ss_dssp CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence 22 1233333 7899999999999 6689999999999999999876521
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.......+...+.+++|+|+ ++++++++.|+.|++||+++++.+..+. +|.. .|.+++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~--------------------~~~~-~i~~~~ 190 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------GHTD-GASCID 190 (337)
T ss_dssp EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSS-CEEEEE
T ss_pred eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeee--------------------cccC-ceEEEE
Confidence 11122345678999999997 6899999999999999999876544331 1222 599999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 287 FSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
|+|++++|++++.||.|++||+.++
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ECCCCCEEEEEecCCcEEEEECCCC
Confidence 9999999999999999999998874
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=295.49 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=127.8
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc------------------CCCceeE
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKK 152 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~ 152 (737)
.|...|.+++|+|+ +.+|++|+ ++.+++|++..+.. +..+.. +...|++
T Consensus 62 ~h~~~V~~v~fspd--g~~la~g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 62 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEE
T ss_pred CCCCEEEEEEECCC--CCEEEEEc-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEE
Confidence 59999999999999 79999876 78999999976432 222222 2335999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (737)
Q Consensus 153 l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 232 (737)
++|+| ++.+|++|+.|+.|++||+.+++. +.....|...|.+++|+|+ +.+|+
T Consensus 129 v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~ 181 (393)
T 1erj_A 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLV 181 (393)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEE
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEE
Confidence 99999 668999999999999999987642 2223467789999999997 58999
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+++.|+.|++||+++++....+. +. ..+.+++|+| ++.+|++|+.|+.|++||+.++
T Consensus 182 s~s~d~~v~iwd~~~~~~~~~~~---------------------~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQCSLTLS---------------------IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE---------------------CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred EecCCCcEEEEECCCCeeEEEEE---------------------cC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999999999865433221 11 1489999999 8999999999999999999875
Q ss_pred C
Q 004685 312 G 312 (737)
Q Consensus 312 ~ 312 (737)
.
T Consensus 240 ~ 240 (393)
T 1erj_A 240 F 240 (393)
T ss_dssp C
T ss_pred c
Confidence 3
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3e-31 Score=292.27 Aligned_cols=234 Identities=19% Similarity=0.224 Sum_probs=189.5
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
.+.+.++.|++|+ ..+.+.+.++.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+ .+|...|.+++|
T Consensus 136 ~sgs~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~ 211 (464)
T 3v7d_B 136 ITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDI 211 (464)
T ss_dssp EEEETTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE
T ss_pred EEEcCCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEE
Confidence 3456789999999 56777889999999999999999988 9999999999999999999999988 789999999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC-------------CCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
++..++.+|++|+.|+.|++||+........... .......+.+|...|.++.. ++.++++++.
T Consensus 212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~ 288 (464)
T 3v7d_B 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSY 288 (464)
T ss_dssp EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEET
T ss_pred ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeC
Confidence 9743368999999999999999986432211000 00014467788899988854 4579999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
|+.|++||+++++. +.....|...|.+++|+|+ +..+++|+.|+.|++||++++
T Consensus 289 d~~i~vwd~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 289 DNTLIVWDVAQMKC-------------------------LYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp TSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT
T ss_pred CCeEEEEECCCCcE-------------------------EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Confidence 99999999987652 2223457788999999997 589999999999999999987
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.+..+ .+|.. .|.+++|+ +.+|++++.||.|++||+.++
T Consensus 343 ~~~~~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 343 ELMYTL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEEE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred cEEEEE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 655444 22333 59999997 579999999999999998874
No 73
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-32 Score=282.35 Aligned_cols=245 Identities=16% Similarity=0.181 Sum_probs=183.5
Q ss_pred cCCCCCcccccccccccccccccceee-cc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcc
Q 004685 20 TDTRPDVNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIET 90 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-------~~~~~~~~~ 90 (737)
+..+.+.++++++|+......+....+ .+ |.+.|++++|+|++++|++|+.|++|+|||+.. .+.+..+ .
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~ 104 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-E 104 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-c
Confidence 445667889999999655445566666 45 999999999999999999999999999999853 3456667 7
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
+|...|.+++|+|+ +.+|++|+.|++|++||++..... .+++..+.+|...|.+++|+| ++.+|++++.|+
T Consensus 105 ~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~ 175 (330)
T 2hes_X 105 GHENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDD 175 (330)
T ss_dssp ----CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTS
T ss_pred CCCCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCC
Confidence 89999999999999 799999999999999999542111 133567889999999999999 668999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCC
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+|++||+..+.. ..+....+|...|.+++|+|+. +..|++++.|+.|++||++...
T Consensus 176 ~i~iW~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 176 TVRIWKDYDDDW-----------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp CEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred eEEEEECCCCCe-----------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 999999876420 1123345678899999999973 3589999999999999997542
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.... ..+...... .+.+...|.+++|++++ +|++++.||.|++||..+
T Consensus 233 ~~~~-----------~~~~~~~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 233 EDDQ-----------QEWVCEAIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp TTSC-----------EEEEEEEEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred cccc-----------ceeEEeeec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 1100 000000000 11122369999999766 799999999999999765
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-31 Score=274.53 Aligned_cols=168 Identities=20% Similarity=0.294 Sum_probs=140.4
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
.....+ .+|...|.+++|+|+ +.+|++|+.||.|++|++.... ....+.+|...|.+++|+| ++++
T Consensus 14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~ 79 (312)
T 4ery_A 14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK----------FEKTISGHKLGISDVAWSS-DSNL 79 (312)
T ss_dssp EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECT-TSSE
T ss_pred eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcc----------cchhhccCCCceEEEEEcC-CCCE
Confidence 344556 799999999999999 7999999999999999987532 2567788999999999999 6689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
|++++.|+.|++||+++++.. .....|...|.+++|+|+ +++|++|+.|+.|++
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 133 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence 999999999999999876521 122346778999999997 589999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
||+++++.+..+. .|.. +|.+++|+|++++|++++.||.|++||+.++
T Consensus 134 wd~~~~~~~~~~~--------------------~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 181 (312)
T 4ery_A 134 WDVKTGKCLKTLP--------------------AHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181 (312)
T ss_dssp EETTTCCEEEEEC--------------------CCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCEEEEEec--------------------CCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999876544331 1222 5999999999999999999999999998874
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-31 Score=281.90 Aligned_cols=232 Identities=16% Similarity=0.234 Sum_probs=183.0
Q ss_pred cCCCCCccccccccccccc-----ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004685 20 TDTRPDVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~ 94 (737)
+..+.+.+++|++|+.... ...+...+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+ .+|..
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~ 119 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQS 119 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCS
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCC
Confidence 3445678899999995432 23456789999999999999999999999999999999999999999888 79999
Q ss_pred ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC---------CcEEEE
Q 004685 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWS 165 (737)
Q Consensus 95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---------~~~l~s 165 (737)
.|.+++|+|+ +.+|++|+.|+.|++||+..... ........|...|.+++|+|.. ..+|++
T Consensus 120 ~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 120 EVYSVAFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp CEEEEEECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred cEEEEEECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 9999999999 79999999999999999973110 0012233788999999999954 268999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
++.|+.|++||... . .......|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus 190 ~~~d~~i~iwd~~~-~-------------------------~~~~~~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 190 VGWDGRLKVWNTNF-Q-------------------------IRYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EETTSEEEEEETTT-E-------------------------EEEEEECCSSCEEEEEECTT-SSEEEEEETTCEEEEEES
T ss_pred EcCCCEEEEEcCCC-c-------------------------eeEEEcCccccceEEEECCC-CCEEEEEcCCCeEEEEEC
Confidence 99999999999432 1 01122356788999999997 689999999999999999
Q ss_pred CCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 246 RMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+... ....+ .. ...|.+++|+|++.++++ +.|+.|++||+.+..
T Consensus 243 ~~~~~~~~~~-------------------~~---~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 243 LNLTYPQREF-------------------DA---GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp SCCSSCSEEE-------------------EC---SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCC
T ss_pred CCCcccceee-------------------cC---CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCC
Confidence 5432 11111 01 124999999999987764 467789999998743
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.9e-31 Score=286.63 Aligned_cols=229 Identities=16% Similarity=0.242 Sum_probs=187.0
Q ss_pred CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~ 104 (737)
+.+++|++|+...........+.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...+.+++|++
T Consensus 122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~- 199 (420)
T 4gga_A 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS- 199 (420)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET-
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC-
Confidence 4578999999554444444455678899999999999999999999999999999999999999 79999999988754
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (737)
Q Consensus 105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~ 184 (737)
.+|++|+.|+.+++||..... ..+..+.+|...+..+.|+| ++.++++++.|+.+++|++..++...
T Consensus 200 ---~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~ 266 (420)
T 4gga_A 200 ---YILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGW 266 (420)
T ss_dssp ---TEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred ---CEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccc
Confidence 699999999999999988533 23567889999999999999 66899999999999999998875321
Q ss_pred CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE--eCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
..+.....+...|.+++|+|.++.+++++ +.|+.|++||++++.....+.
T Consensus 267 ---------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~------- 318 (420)
T 4gga_A 267 ---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------- 318 (420)
T ss_dssp ---------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------
T ss_pred ---------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------
Confidence 11223345678899999999888888765 479999999999876544431
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~ 311 (737)
.+. .+.++.|+|++..+++++ .|+.|+|||+.++
T Consensus 319 -------------~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 319 -------------AHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp -------------CSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred -------------ccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 122 489999999999998876 5899999998763
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=304.38 Aligned_cols=216 Identities=11% Similarity=0.102 Sum_probs=157.8
Q ss_pred cCCceEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEECCCCeEE----EEEcccCccce
Q 004685 49 HQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIETGHSANV 96 (737)
Q Consensus 49 H~~~V~~l~~s~~g---------~~las-------------------gs~dg~V~vwd~~~~~~~----~~~~~~h~~~V 96 (737)
+.+.|.+|+|+|++ ++||+ |+.|++|+|||+.+++.. ..+ ..|...|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-EECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-EecCCcE
Confidence 67899999999976 56666 457889999999877642 334 4678899
Q ss_pred EEEEEeeC----CCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685 97 FCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 97 ~~v~~sp~----~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 171 (737)
.+++|+|+ .++.+|++++.||+|+|||+........ ......+...+.+|...|++++|++ + ..|++|+.||+
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~Dgt 288 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGF 288 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSE
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCE
Confidence 99999996 1247999999999999999975432100 0001133457788999999999998 4 47999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE--EEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
|++||++++..+ ......|...|.++ +|+|++.++|++|+.|++|+|||+++.+
T Consensus 289 V~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 289 VAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999999875321 11123577889999 4666522799999999999999998765
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcc-cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....+. +|.. ..|.+++|+|+++.+++++.|++|++||++++
T Consensus 345 ~~~~~~--------------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 345 TTKTTV--------------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp HHCEEE--------------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred cccccc--------------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 332221 1111 13788999999999999999999999998763
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-31 Score=281.13 Aligned_cols=132 Identities=18% Similarity=0.262 Sum_probs=111.9
Q ss_pred ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 118 (737)
++...+++|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+ .+|...|.+++|+|+.++.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4567889999999999999999999999999999999998 55667777 78999999999987633589999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCC
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
|++||+..... .....+..|...|.+++|+|+. +.+|++++.|+.|++||++...
T Consensus 81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 99999986421 1356777899999999999942 6899999999999999998764
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.5e-31 Score=289.36 Aligned_cols=206 Identities=14% Similarity=0.192 Sum_probs=149.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 135 (737)
.|+|++..+++++ .|+ .+++.+..+..+|...|++++|+| + +.+|++|+.||+|++||+.......
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l~s~s~dg~v~vwd~~~~~~~~---- 100 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYLITGSDQGVIKIWNLKEIIVGE---- 100 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEEEEEETTSEEEEEEHHHHHTTC----
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEEEEecCCceEEEeECcccccCc----
Confidence 3788888887765 388 456777777678999999999999 7 7999999999999999987511110
Q ss_pred CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC---CCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (737)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (737)
...+...+ .|...|++++|+| ++.+|++++.||.|++||+. .++.. .... ......+...+
T Consensus 101 ~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----------~~~~---~~~i~~~~~~~ 164 (437)
T 3gre_A 101 VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV-----------KFLN---CECIRKINLKN 164 (437)
T ss_dssp CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE-----------EEEE---EEEEEEEEGGG
T ss_pred ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee-----------eccc---cceeEEEEccC
Confidence 01112333 5999999999999 66899999999999999995 33211 0000 00111111111
Q ss_pred -CCccceEEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685 213 -KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 213 -~~~~~v~~i~--~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
.+...+.++. ++++ +.+|++++.|+.|++||+++++.+..+.. ..|. ..|++++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------~~h~-~~v~~~~~s~ 224 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIEN------------------SPRH-GAVSSICIDE 224 (437)
T ss_dssp GSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEEC------------------CGGG-CCEEEEEECT
T ss_pred cccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEcc------------------CCCC-CceEEEEECC
Confidence 1345667777 4565 68999999999999999998775544421 0122 2699999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++.+|++|+.||.|++||++++
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEcCCCeEEEEEcCCc
Confidence 9999999999999999999874
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.4e-30 Score=277.29 Aligned_cols=224 Identities=16% Similarity=0.267 Sum_probs=186.2
Q ss_pred CCcccccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
.+.++.|++|+. .+.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+
T Consensus 109 ~~~d~~v~lw~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~ 185 (401)
T 4aez_A 109 VALERNVYVWNA--DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN 185 (401)
T ss_dssp EEETTEEEEEET--TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE
T ss_pred EECCCeEEEeeC--CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC
Confidence 446788999994 44455555554 8899999999999999999999999999999999999998 7999999999994
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
+.+|++|+.||.|++||++... .....+.+|...|.+++|+| ++.+|++++.|+.|++||++++..
T Consensus 186 ----~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 186 ----RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP 251 (401)
T ss_dssp ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE
T ss_pred ----CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc
Confidence 4699999999999999998532 23677888999999999999 668999999999999999987652
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCcccccCCCCC
Q 004685 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
. .....|...|.+++|+|++..++++++ .|+.|++||+++++.+..+.
T Consensus 252 ~-------------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----- 301 (401)
T 4aez_A 252 K-------------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----- 301 (401)
T ss_dssp E-------------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----
T ss_pred c-------------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----
Confidence 1 122346778999999998777888876 79999999999876554431
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~ 311 (737)
+ ...|.+++|+|++++|++++ .||.|++||+.++
T Consensus 302 ----------------~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 302 ----------------A-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ----------------C-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ----------------C-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 1 12599999999999999954 7999999998763
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-31 Score=283.92 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=145.2
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEec----CCCCC------CCCCCCCCCCc
Q 004685 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSG------RGLDDNAITPS 140 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~----~~~~~------~~~~~~~~~~~ 140 (737)
..+.+|++......... ..|...|.+++|+|+ +. +|++|+.||.|++|++ ..+.. ...........
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 34567888766554444 457799999999999 67 9999999999999999 65331 00000000000
Q ss_pred eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004685 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (737)
Q Consensus 141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (737)
....+|...|++++|+| ++.+|++++.||.|++||. ++. .+.....|...|.+
T Consensus 102 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~~~-------------------------~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-TGA-------------------------LLNVLNFHRAPIVS 154 (425)
T ss_dssp ------CBCEEEEEECT-TSSEEEEEETTSCEEEEET-TSC-------------------------EEEEECCCCSCEEE
T ss_pred ccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-CCC-------------------------eeeeccCCCccEEE
Confidence 11123688999999999 6689999999999999993 322 12223356788999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (737)
Q Consensus 221 i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d 300 (737)
++|+|+ +++|++++.|+.|++||+++++.+..+............. ........+.+++|+|++ .+++++.+
T Consensus 155 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~ 226 (425)
T 1r5m_A 155 VKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE------NHSGDGSLGVDVEWVDDD-KFVIPGPK 226 (425)
T ss_dssp EEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEEECGG
T ss_pred EEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec------cccCCcceeeEEEEcCCC-EEEEEcCC
Confidence 999997 5899999999999999999887665553322111000000 000111138889999985 58899999
Q ss_pred CeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 301 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
|.|++||+.++........+...+..++|+|+.
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 999999999987666666777778888888853
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.7e-29 Score=275.22 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=158.6
Q ss_pred CceEEEEEcCCC----------CEEEEEeC----CCcEEEEECC--------------------------CCeEEEEEcc
Q 004685 51 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET 90 (737)
Q Consensus 51 ~~V~~l~~s~~g----------~~lasgs~----dg~V~vwd~~--------------------------~~~~~~~~~~ 90 (737)
-+..++.|.|+. .+|+.|+. .+.|.++++. +++.......
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 467888888864 35777754 3456666532 1122212225
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
.|...|++++|+|+. +.+|++++.||.|++|++..............++..+.+|...|++++|+|.+..+|++|+.||
T Consensus 126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 799999999999963 5799999999999999998532111111123457788899999999999996655999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP- 249 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~- 249 (737)
.|++||+...... ... .........|...|.+++|+|.++.+|++++.|+.|++||+++..
T Consensus 205 ~i~vwd~~~~~~~----------~~~--------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 205 TICLWDINATPKE----------HRV--------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp CEEEEETTSCCBG----------GGE--------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred eEEEEeCCCCCCC----------Cce--------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 9999999875321 000 011222345778899999999767899999999999999999763
Q ss_pred --CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 004685 250 --PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 250 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~ 310 (737)
.+..+ ..|.. .|++++|+|++. +|++|+.||.|++||+++
T Consensus 267 ~~~~~~~--------------------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 267 SKPSHTV--------------------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SSCSEEE--------------------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CcceeEe--------------------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 11111 12322 599999999987 688999999999999886
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.8e-30 Score=280.52 Aligned_cols=209 Identities=20% Similarity=0.202 Sum_probs=165.1
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecC
Q 004685 52 CVNAISWNSKGS-LLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
....++++|+.. ++++|+.||.|+||++.+.. .+..+ .+|...|++++|+| + +.+|++|+.||.|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEcc
Confidence 455688988765 44568899999999997643 23344 68999999999999 6 7999999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
...... ....++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++..
T Consensus 113 ~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------- 167 (402)
T 2aq5_A 113 DGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV---------------------- 167 (402)
T ss_dssp TTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE----------------------
T ss_pred CCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc----------------------
Confidence 643210 0013467888999999999999965579999999999999999876521
Q ss_pred eeccCC--CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 206 RSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 206 ~~~~~~--~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
... ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+. .+|....+.
T Consensus 168 ---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~ 224 (402)
T 2aq5_A 168 ---LTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPV 224 (402)
T ss_dssp ---EEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCC
T ss_pred ---EEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcce
Confidence 111 356788999999996 6899999999999999999876544331 123332488
Q ss_pred EEEEcCCCCEEEEE---eCCCeEEEEEcCCC
Q 004685 284 HVTFSPNGEEVLLS---YSGEHVYLMDVNHA 311 (737)
Q Consensus 284 ~v~~sp~g~~l~~g---~~dg~v~iwd~~~~ 311 (737)
+++|+|++.+|++| +.|+.|++||+.+.
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 99999999999999 78999999998874
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.1e-29 Score=272.23 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=140.7
Q ss_pred EEECCCCeEEEEEcccCccceEEEEEeeCCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE
Q 004685 76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA 154 (737)
Q Consensus 76 vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 154 (737)
+|++...+....+ .+|...|.+++|+|+ + .+|++|+.||.|++||+...... ......+|...|.+++
T Consensus 57 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 57 IRSLKSYKLHRTA-SPFDRRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNKT--------SFIQGMGPGDAITGMK 125 (383)
T ss_dssp HHHHTTCEEEEEE-CCCSSCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTCE--------EEECCCSTTCBEEEEE
T ss_pred cccccccceEEec-cCCCCCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCcccc--------eeeecCCcCCceeEEE
Confidence 3444556666777 789999999999999 5 89999999999999999864321 1222346999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE
Q 004685 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 234 (737)
Q Consensus 155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~ 234 (737)
|+|.++.+|++++.|+.|++||++... ...+.....+...+.+++|+|+ +.+|+++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 181 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATG 181 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEE
Confidence 999667899999999999999998532 1122233345678999999997 5899999
Q ss_pred eCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~ 311 (737)
+.|+.|++||++ ++.+..+ .+|.. .|.+++|+|+++ +|++++.|+.|++||+.+.
T Consensus 182 ~~d~~i~i~d~~-~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 182 DSTGRLLLLGLD-GHEIFKE--------------------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp ETTSEEEEEETT-SCEEEEE--------------------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred CCCCCEEEEECC-CCEEEEe--------------------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence 999999999995 3322222 12333 699999999999 8999999999999999874
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6.5e-29 Score=261.10 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=136.2
Q ss_pred CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC
Q 004685 80 SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159 (737)
Q Consensus 80 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 159 (737)
++.++..++ .+|.+.|++|+|+|+. +++|+||+.|++|+|||+....... ..+...+.+|...|.+++|+| +
T Consensus 26 ~~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~-d 97 (340)
T 4aow_A 26 EQMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISS-D 97 (340)
T ss_dssp CEEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECT-T
T ss_pred CceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECC-C
Confidence 334455667 8999999999999985 6899999999999999998643221 124567889999999999999 6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
+.+|++++.|+.|++|+....... .....+...+..+.+++. +..|++++.|+.
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~ 151 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKT 151 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSC
T ss_pred CCEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCe
Confidence 689999999999999998876421 111123456777888887 579999999999
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--CEEEEEeCCCeEEEEEcCCC
Q 004685 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g--~~l~~g~~dg~v~iwd~~~~ 311 (737)
+++||+......... ..+|.. .+..++|++++ .++++++.|+.|++||+.++
T Consensus 152 ~~~~d~~~~~~~~~~-------------------~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 152 IKLWNTLGVCKYTVQ-------------------DESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp EEEECTTSCEEEEEC-------------------SSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEeCCCceEEEE-------------------eccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 999998754322111 122333 58999999864 57889999999999998763
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.4e-29 Score=274.54 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=132.1
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
..|...|+||+|+|.. +.+|++|+.||.|+|||+...... ....+.+|...|++|+|+|.++.+|++|+.|
T Consensus 116 ~~~~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~--------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 116 APFDRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKP--------TFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp EECSSCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCC--------EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCce--------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 5688999999999964 689999999999999999864432 2445678999999999999778899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
|+|++||++.... ..+.....+...+.+++|+|+ +.+|++|+.||.|++||++...
T Consensus 187 ~~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 187 GTTRLQDFKGNIL-----------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp SCEEEEETTSCEE-----------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB
T ss_pred CEEEEeeccCCce-----------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce
Confidence 9999999976431 112222334456788999997 6899999999999999987432
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~ 311 (737)
+..+ .+|.. .|++++|+|++. +|++|+.|+.|++||+.+.
T Consensus 243 -~~~~--------------------~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 243 -LWNL--------------------RMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -CCCS--------------------BCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred -eEEE--------------------ecccc-eEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 2111 22433 699999999886 6778899999999999874
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.4e-29 Score=290.29 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=189.2
Q ss_pred cCCCCCcccccccccccccc---cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685 20 TDTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V 96 (737)
+..+.+.+++|++|+..... ......+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+ .+|...|
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v 475 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDV 475 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCE
Confidence 34567788999999854322 2345678999999999999999999999999999999999999999888 7999999
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEE
Q 004685 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQH 175 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vw 175 (737)
.+++|+|+ +.+|++|+.|++|++||+...... .......+|...|.+++|+|+. ..+|++++.|++|++|
T Consensus 476 ~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 476 LSVAFSLD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp EEEEECTT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred EEEEEeCC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence 99999999 799999999999999998642110 0112235789999999999954 2589999999999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
|++..+. ......|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+.
T Consensus 547 d~~~~~~-------------------------~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 547 NLSNCKL-------------------------RSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp ETTTCCE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred ECCCCcE-------------------------EEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 9987652 2223467789999999997 6899999999999999999876543321
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
.+ ..|.+++|+|++.+|++++ ++.|++||+.++.
T Consensus 601 --------------------~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 601 --------------------AN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp --------------------CS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred --------------------CC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 11 2599999999998777665 5679999999854
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.1e-29 Score=262.94 Aligned_cols=159 Identities=9% Similarity=0.071 Sum_probs=129.9
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc-EEEEEeC
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSASE 168 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s~ 168 (737)
.+|...|.+++|+|+ +.+|++++.|+.|++|++...... .+...+..|...|.+++|+| ++. +|++++.
T Consensus 8 ~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~ 77 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFID-NTDLQIYVGTV 77 (342)
T ss_dssp SCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEE-SSSEEEEEEET
T ss_pred cCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECC-CCCcEEEEEcC
Confidence 689999999999999 799999999999999999864311 12445568999999999999 568 8999999
Q ss_pred CCcEEEEEc-CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC--CccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 169 DGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 169 Dg~I~vwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
||.|++||+ ..+.. ..... |...|.+++|+| +.+|++++.|+.|++||+
T Consensus 78 dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp TSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECH
T ss_pred CCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcc
Confidence 999999999 76541 11223 678899999999 479999999999999999
Q ss_pred CC---------CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 246 RM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 246 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++ .+.+..+. +. ..|.+++|+|++ +++++.|+.|++||+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~---------------------~~-~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNTK---------------------VK-NKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp HHHTTBCEEEEESCSSSSS---------------------SC-CCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred cccccccccccCCeeeEEe---------------------eC-CceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 86 44333221 22 259999999988 99999999999999887
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.8e-28 Score=255.04 Aligned_cols=227 Identities=15% Similarity=0.214 Sum_probs=180.2
Q ss_pred Cccccccccccccccccccee--ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685 25 DVNHSLQMHSSLVRRLSQERE--LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~--l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
+.+++|++|+.. +.+.+.. +.+|...|++++|+|++++||+|+.||+|++||+.+++.+..+ .+|...+.++.+.
T Consensus 42 g~D~tV~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~ 118 (318)
T 4ggc_A 42 ALDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN 118 (318)
T ss_dssp EETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE
T ss_pred EeCCEEEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecC
Confidence 468999999944 4455544 4578889999999999999999999999999999999999998 7899888876654
Q ss_pred eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
+.++++++.++.+++|+..... ..+..+.+|...+..+.+.+ .+.+|++++.|+.|++||+++++.
T Consensus 119 ----~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 119 ----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTT
T ss_pred ----CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcc
Confidence 4689999999999999987532 23567789999999999999 668999999999999999988753
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE--EEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL--LVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l--~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (737)
.. ........+...+.++.++|.++..+ ++++.++.|++||.+.........
T Consensus 185 ~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----- 238 (318)
T 4ggc_A 185 GW---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----- 238 (318)
T ss_dssp BS---------------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----
T ss_pred cc---------------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-----
Confidence 21 01122234567889999999876665 456678999999998765332211
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~ 311 (737)
+ ...+..+.|+|++..+++++ .|+.|++||+.++
T Consensus 239 ----------------~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 239 ----------------A-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp ----------------C-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred ----------------c-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 1 12489999999999988876 5899999998774
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.7e-29 Score=268.41 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=131.1
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CC---cEE
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NP---HVV 163 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~---~~l 163 (737)
.+|...|++++|+| .+|++|+.||.|++|++....... .......+.+|...|++++|+|+ ++ .+|
T Consensus 13 ~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 13 KAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNEN----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCC----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCccccc----CCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 78999999999987 499999999999999998643111 12246777899999999999993 27 899
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC-----ccceEEEEEe----cCCCcE-EEE
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-----TLSLKSCDIS----STRPHL-LLV 233 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s----p~~~~~-l~t 233 (737)
++++.|+.|++||+.++.... . . .+.....+ ...|.+++|+ |+ +.. |++
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~---------~-~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~ 143 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETK---------K-V----------IFEKLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVA 143 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTC---------C-E----------EEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccc---------c-c----------cceeecccccccCCCcEEEEEEeeccCCC-CceEEEE
Confidence 999999999999998876310 0 0 01111233 4789999999 87 578 999
Q ss_pred EeCCCcEEEEECCC------CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685 234 GGSDAFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 234 ~s~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd 307 (737)
++.|+.|++||++. .+.+.... ...+........ .+...|.+++|+|++ +|++++.||.|++||
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSP--------TLELQGTVESPM-TPSQFATSVDISERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCC--------EEEEEEEECCSS-SSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred EeCCCcEEEEeCCccccccccceeeccC--------cceeeeeecccc-CCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence 99999999999987 44332000 000000000001 122369999999999 999999999999999
Q ss_pred cCCC
Q 004685 308 VNHA 311 (737)
Q Consensus 308 ~~~~ 311 (737)
+.++
T Consensus 214 ~~~~ 217 (397)
T 1sq9_A 214 LSTL 217 (397)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8763
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-29 Score=270.30 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=141.9
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
.-...|.+++|+|||+++||++.|++|+ |...++ .+ .+|...|.+++|+|+ | .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ- 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence 3457899999999999999999999999 755443 44 689999999999999 5 466666655432
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.. ...+ .|...|.+++|+| ++.+|++++.||.|++||... . +..+. .
T Consensus 77 --~~--------~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-~---------------l~~l~-~---- 123 (588)
T 2j04_A 77 --NG--------LLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-M---------------LTNLD-S---- 123 (588)
T ss_dssp --SC--------SSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-E---------------EEECC-C----
T ss_pred --ce--------Eeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-e---------------eeecc-C----
Confidence 11 2222 4588999999999 668999999999999999432 0 00000 0
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
..+.....+.+++|+|+ +++||+|+.||.|++||+..+...... -..+..+ .....+|. .+|.+++|
T Consensus 124 --~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~------~i~l~ti---~~~~~gh~-~~V~sVaw 190 (588)
T 2j04_A 124 --KGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPE------FYFESSI---RLSDAGSK-DWVTHIVW 190 (588)
T ss_dssp --SSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCC------CEEEEEE---ECSCTTCC-CCEEEEEE
T ss_pred --CCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCcccccc------ceeeeee---eccccccc-ccEEEEEE
Confidence 00001235899999997 699999999999999999876420000 0000000 00112233 37999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCC
Q 004685 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+|+| +++++.|+.|++||+..
T Consensus 191 SPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCS
T ss_pred cCCc--EEEEeCCCeEEEEECCC
Confidence 9999 88999999999999876
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.4e-28 Score=261.37 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=182.3
Q ss_pred CCCCcccccccccccccccccceee-----------cccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQEREL-----------EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE 89 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~ 89 (737)
...+.++.|++|+............ .+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+
T Consensus 60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 138 (408)
T 4a11_B 60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF- 138 (408)
T ss_dssp EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-
Confidence 3455688999999543333222221 36999999999999 7889999999999999999999988877
Q ss_pred ccCccceEEEEEeeCC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685 90 TGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
.+...+.++.|+|.. ++.++++++.|+.|++||+.... .+..+..|...|.+++|+|++..+|++++.
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~ 207 (408)
T 4a11_B 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS----------CSHILQGHRQEILAVSWSPRYDYILATASA 207 (408)
T ss_dssp -ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC----------CCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred -cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc----------eeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence 378899999999963 14599999999999999998632 367788899999999999966557999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
||.|++||++...........+... ...........|...|.+++|+|+ +++|++++.|+.|++||++++
T Consensus 208 dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 208 DSRVKLWDVRRASGCLITLDQHNGK---------KSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp TSCEEEEETTCSSCCSEECCTTTTC---------SCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred CCcEEEEECCCCCcccccccccccc---------cceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCC
Confidence 9999999998876321111000000 001112233567889999999997 689999999999999999987
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+........... .... .+........+..+++++.++.|++||+.++
T Consensus 278 ~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 324 (408)
T 4a11_B 278 ENTLVNYGKVCN--------------NSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG 324 (408)
T ss_dssp CBCCCCCCCCCC--------------CCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred ccceeccccccc--------------cccc--cceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence 654333211100 0001 1222233345566778888999999998774
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=292.63 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=108.4
Q ss_pred ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
...+.+|.++|++++|+|++++|++|+.||.|+|||+. +++.+..+ .+|..+|.+++|+|+.++.+|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 35688999999999999999999999999999999998 55667777 7999999999999874468999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCC
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
+||+..... .....+..|...|++++|+|+. +.++++|+.||.|++||++...
T Consensus 81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 999986321 2356778899999999999942 6899999999999999998764
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-28 Score=252.69 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=129.5
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
+....+ .+|...|.+++| |+ +.+|++|+.||.|++||+... .....+..|...|.+++|+| ++.+
T Consensus 9 ~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~ 73 (313)
T 3odt_A 9 QLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYDS-EKEL 73 (313)
T ss_dssp EEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEET-TTTE
T ss_pred HHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEECC-CCCE
Confidence 566677 899999999999 87 689999999999999999752 22566778999999999999 6689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
|++++.|+.|++|++...... ..+.....|...+.+++|+ ++++++++.|+.|++
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~ 128 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKV 128 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred EEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEE
Confidence 999999999999999875421 1122334577889999994 469999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD 307 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd 307 (737)
|| ..+.+..+ ..|.. .+.+++|+| ++.++++++.||.|++||
T Consensus 129 ~d--~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 129 WK--EGSLVYNL--------------------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EE--TTEEEEEE--------------------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred Ec--CCcEEEec--------------------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 99 22222221 11222 599999998 999999999999999999
No 95
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-28 Score=256.61 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (737)
Q Consensus 85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 164 (737)
...+ .+|...|++++|+|+ +.+|++|+.||.|++||+... +.+..+.+|...|.+++|+| ++.+|+
T Consensus 25 ~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~ 90 (369)
T 3zwl_B 25 AIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDC-FTKYCV 90 (369)
T ss_dssp EEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred cEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcC-CCCEEE
Confidence 3445 789999999999999 799999999999999999863 23677889999999999999 668999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-----Cc
Q 004685 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AF 239 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----g~ 239 (737)
+++.||.|++||+.+++.. . .+ .+...+.+++|+|+ +.++++++.+ +.
T Consensus 91 s~~~dg~i~iwd~~~~~~~-----------~-----------~~----~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCV-----------A-----------TW----KSPVPVKRVEFSPC-GNYFLAILDNVMKNPGS 143 (369)
T ss_dssp EEETTTEEEEEETTTCCEE-----------E-----------EE----ECSSCEEEEEECTT-SSEEEEEECCBTTBCCE
T ss_pred EEeCCCeEEEEECCCCcEE-----------E-----------Ee----ecCCCeEEEEEccC-CCEEEEecCCccCCCCE
Confidence 9999999999999887532 0 01 14567999999997 5899999998 99
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
|++||++.......+...... .. ..+..+.. ...+.+++|+|++++|++++.||.|++||+.+
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~--~~-----~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEE--PI-----HKIITHEG-LDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSS--CS-----EEEECCTT-CCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCccceeecccccc--ee-----eeccCCcC-ccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 999999877644333211100 00 00111111 11599999999999999999999999999876
No 96
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2e-28 Score=252.74 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=192.2
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004685 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV 96 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V 96 (737)
..+.+.++++++|+......+.+.+|.+|.++|++++|+|+ +++||+|+.|++|+|||+.+++ .+..+ ..|...|
T Consensus 24 las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v 102 (297)
T 2pm7_B 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASV 102 (297)
T ss_dssp EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCE
T ss_pred EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCce
Confidence 34567889999999655556788999999999999999874 8999999999999999998874 45556 6899999
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC------------CcEEE
Q 004685 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN------------PHVVW 164 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~------------~~~l~ 164 (737)
.+++|+|+..+.+|++|+.|+.|++||++..... ....+.+|...|.+++|+|.. +.+|+
T Consensus 103 ~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~ 174 (297)
T 2pm7_B 103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (297)
T ss_dssp EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------CCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------eeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence 9999999733589999999999999999863211 135677899999999999952 46899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEE
Q 004685 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARL 242 (737)
Q Consensus 165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~i 242 (737)
+|+.|++|++||++.+... .........|...|.+++|+|+. +.+|++++.|+.|++
T Consensus 175 sgs~D~~v~lwd~~~~~~~---------------------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 175 TGGADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp EEETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred EEcCCCcEEEEEEcCCCce---------------------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 9999999999999875421 01122345688899999999974 479999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
||++........ ..+...++. ..|.+++|+|+|++|++++.|+.|++|+...
T Consensus 234 Wd~~~~~~~~~~---------------~~~~~~~~~-~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 234 WTQDNEQGPWKK---------------TLLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEESSTTSCCEE---------------EESSSSCCS-SCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEeCCCCCccce---------------eeeecccCC-CcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999764210000 000001222 2699999999999999999999999999875
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.4e-28 Score=261.98 Aligned_cols=170 Identities=7% Similarity=0.035 Sum_probs=135.6
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
..|..+|.+++|+|+ +.+|++++.|+.|++||+.... ...+..+.+|...|.+++|+| ++.+|++++.|
T Consensus 5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d 73 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTD 73 (372)
T ss_dssp ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTE--------EEEEEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCc--------EEeeeeecCCCCcccEEEEeC-CCCEEEEEcCC
Confidence 458999999999999 7999999999999999998632 113677889999999999999 66899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
+.|++||+.+++.. .......|...+.+++|+|+ +++|++++.|+.|++||++...
T Consensus 74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence 99999999776411 11222346778999999997 5899999999999999998765
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
...... . ...+|. ..|.+++|+|++.+|++++.||.|++||+...
T Consensus 130 ~~~~~~----------~------~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 174 (372)
T 1k8k_C 130 DWWVCK----------H------IKKPIR-STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 174 (372)
T ss_dssp TEEEEE----------E------ECTTCC-SCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred cceeee----------e------eecccC-CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence 311110 0 001122 26999999999999999999999999998763
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.6e-29 Score=267.64 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=94.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEE----EcccCccceEEEEEee--------CCCCCEEEEEECCCcEEEEec
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~----~~~~h~~~V~~v~~sp--------~~~~~~l~sgs~dg~I~iwd~ 124 (737)
.+++++.+||+|+.|++|+|||..+++.... ...+|...|++++|+| + +.+|++|+.|++|+|||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETTSEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECCCeEEEEEC
Confidence 3344566899999999999999998865432 1268999999999998 5 689999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
.... +...+..|...|.+++|+|+++.+|++++.|++|++||+++++.
T Consensus 174 ~~~~----------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 174 TDEG----------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp ETTE----------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred CCCc----------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 7532 25667789999999999997767899999999999999998763
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=260.88 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=178.6
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEE-
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF- 101 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~- 101 (737)
++.+++|+....+...... .+|..+|++++|+|+ +.+|++|+.||.|++||+.+++ .+..+ .+|...|.+++|
T Consensus 43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI 120 (357)
T ss_dssp CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence 8899999954433332222 379999999999998 6999999999999999999887 77777 799999999966
Q ss_pred -----eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC----ceeEEE----EecCCCcEEEEEeC
Q 004685 102 -----VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE 168 (737)
Q Consensus 102 -----sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~~l~s~s~ 168 (737)
+|+ +.+|++++.||.|++||+..... +...+..|.. .+.++. |+| ++.+|++++.
T Consensus 121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKDD---------PVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp SGGGCC-C--CCEEEEEETTSCEEEECTTSCSS---------CSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccccCCC--ccEEEEEeCCCeEEEEeCCCCCC---------cceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 566 78999999999999999986431 2455544443 789998 566 6689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec---CCCcEEEEEeCCCcEEEEEC
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~~l~t~s~Dg~i~iwd~ 245 (737)
|+.|++||+++++.. ....+...+.+++|+| + +.+|++++.|+.|++||+
T Consensus 189 d~~i~i~d~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 189 NGDIKLFDLRNMALR--------------------------WETNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp TSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEE
T ss_pred CCeEEEEECccCcee--------------------------eecCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeC
Confidence 999999999886521 0113456899999999 5 589999999999999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 004685 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~ 312 (737)
++.+....+.. ... .+|.. .|++++|+|+++ +|++++.||.|++||+.++.
T Consensus 242 ~~~~~~~~~~~-------------~~~--~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 242 RTQHPTKGFAS-------------VSE--KAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEETTTEEEE-------------EEE--ECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cCCCcccceee-------------ecc--CCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 87664433210 000 12333 699999999998 89999999999999998753
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5e-28 Score=256.42 Aligned_cols=216 Identities=9% Similarity=0.052 Sum_probs=139.1
Q ss_pred ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCC
Q 004685 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA 117 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg 117 (737)
..+++.++.+|...|++++|+|||++|++|+.++ ++|||+.+++..... +...+..+++.++ ++.+ ++++.|+
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~d~ 81 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR--TNYVAFVTGVKE 81 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT--SSEEEEECSSTT
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC--CCEEEEEECCcc
Confidence 3445667789999999999999999999998775 789999988766554 2235888889888 4555 6778889
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC-CCCCCCCCCCCccceE
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNI 196 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~-~~~~~~~~~~~~~~~~ 196 (737)
+|++||+..+. ++..+. +...|.++.|++ + .++++ .|+.|++||+.+. +.+..
T Consensus 82 ~v~iWd~~~~~----------~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~----------- 135 (355)
T 3vu4_A 82 VVHIWDDVKKQ----------DVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD----------- 135 (355)
T ss_dssp EEEEEETTTTE----------EEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC-----------
T ss_pred EEEEEECCCCc----------EEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE-----------
Confidence 99999998632 244454 677999999987 3 34444 4789999999987 32210
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE--EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (737)
... ....+++++ ..+++ |+.||.|++||++++........... .....+.....
T Consensus 136 --------------~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~~ 191 (355)
T 3vu4_A 136 --------------DIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVLI 191 (355)
T ss_dssp --------------CEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEEE
T ss_pred --------------ecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEEE
Confidence 000 233456666 35555 68999999999987642211100000 00000000001
Q ss_pred CCCcccceeEEEEcCCCCEEEEEeCCCe-EEEEEcCCC
Q 004685 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNHA 311 (737)
Q Consensus 275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~-v~iwd~~~~ 311 (737)
.+|.. .|++++|+|+|++|++|+.|++ |++||+.++
T Consensus 192 ~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 192 KAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp CCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 33444 6999999999999999999998 999999874
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.1e-28 Score=263.81 Aligned_cols=247 Identities=11% Similarity=0.098 Sum_probs=181.9
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFC 98 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~ 98 (737)
...+.++.|++|+......+...++.+|.+.|++++|+|++++|++|+.|+.|++||+.+++ ....+ ..|...|.+
T Consensus 27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~ 105 (377)
T 3dwl_C 27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATF 105 (377)
T ss_dssp ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEE
T ss_pred EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEE
Confidence 44567899999996554447888999999999999999999999999999999999999877 55556 689999999
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
++|+|+ +.+|++|+.|+.|++||+..... ......+.. |...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 106 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 106 VRWSPN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSA 175 (377)
T ss_dssp EECCTT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEE
T ss_pred EEECCC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEE
Confidence 999998 79999999999999999986432 122556666 999999999999 6689999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC----ccc
Q 004685 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTS 253 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~----~~~ 253 (737)
+.............. .+......+... .|...|.+++|+|+ +++|++++.|+.|++||+++++. +..
T Consensus 176 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 176 YVRDVDAKPEASVWG-------SRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp CCSSCC-CCCSCSSC-------SCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred EecccCCCccccccc-------cccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 755422111000000 000001122333 67889999999997 58999999999999999998764 222
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+ .+|.. .|.+++|+|++++|++|+.++.+ +|+...
T Consensus 247 ~--------------------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 247 V--------------------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp E--------------------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred e--------------------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 2 12333 59999999999999888766655 776654
No 102
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=9.9e-29 Score=262.28 Aligned_cols=259 Identities=12% Similarity=0.116 Sum_probs=184.8
Q ss_pred cccccccccccccccccceeecc-----cCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685 26 VNHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~-----H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V 96 (737)
.++.|++|+.. +.+.+..+.. |...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+ .+|...|
T Consensus 42 ~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i 118 (366)
T 3k26_A 42 GSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAI 118 (366)
T ss_dssp ETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCE
T ss_pred CCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcE
Confidence 35589999943 3444455543 5678999999998 679999999999999999999999988 7899999
Q ss_pred EEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee---ccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004685 97 FCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (737)
Q Consensus 97 ~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 172 (737)
.+++|+| + +.+|++|+.||.|++||+..... ...+ ..|...|.+++|+| ++.+|++++.||.|
T Consensus 119 ~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 185 (366)
T 3k26_A 119 NELKFHPRD--PNLLLSVSKDHALRLWNIQTDTL----------VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSL 185 (366)
T ss_dssp EEEEECSSC--TTEEEEEETTSCEEEEETTTTEE----------EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EEEEECCCC--CCEEEEEeCCCeEEEEEeecCeE----------EEEecccccccCceeEEEECC-CCCEEEEecCCCCE
Confidence 9999999 6 79999999999999999986322 3444 68999999999999 66899999999999
Q ss_pred EEEEcCCCCCCCCCCC---CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 173 RQHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 173 ~vwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
++||+++++....... .........................|...|.+++|+ ++++++++.|+.|++||+++..
T Consensus 186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTT
T ss_pred EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCcc
Confidence 9999987643200000 000000000000000001122233477899999999 3599999999999999998765
Q ss_pred CcccccCCCCC-CCCccccccccccCCCCcccceeEEEEcCC--CCEEEEEeCCCeEEEEEcCCC
Q 004685 250 PLTSCQKRMSP-PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--g~~l~~g~~dg~v~iwd~~~~ 311 (737)
........... ..... .+ .+|.. .|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~-----~~--~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 263 DDIDKIKPSESNVTILG-----RF--DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CCGGGCCTTCCCEEEEE-----EE--ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred ccccccccCCcchheec-----cc--cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 42221111000 00011 11 12332 5899999999 999999999999999999874
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=260.34 Aligned_cols=208 Identities=10% Similarity=0.134 Sum_probs=162.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcc-------------------------------------
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET------------------------------------- 90 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~------------------------------------- 90 (737)
.+|.+++|+|+|++|+++. ++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5889999999999777664 6799999999888 5555420
Q ss_pred ----------------cCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceeec--cCCCcee
Q 004685 91 ----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVK 151 (737)
Q Consensus 91 ----------------~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~ 151 (737)
.|...|.+++|+|+ +.+| ++|+.||.|++||+....+ ..+..+. .|...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCce
Confidence 23337999999999 6885 8999999999999983112 1244444 5778999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC--CCc
Q 004685 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPH 229 (737)
Q Consensus 152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~ 229 (737)
+++|+| ++.+|++++.||.|.+|++........ .......|...|.+++|+|+ .+.
T Consensus 154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCc
Confidence 999999 668999999999999999987753210 11123356788999999996 247
Q ss_pred EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+|++++.|+.|++||+++++.+..+. .+|.. .|.+++|+ ++.+|++++.|+.|++||+.
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDKWL-------------------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEEEC-------------------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCceeeeee-------------------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence 99999999999999998776543321 22333 69999999 99999999999999999999
Q ss_pred CCC
Q 004685 310 HAG 312 (737)
Q Consensus 310 ~~~ 312 (737)
+++
T Consensus 271 ~~~ 273 (450)
T 2vdu_B 271 TGK 273 (450)
T ss_dssp TCC
T ss_pred CCc
Confidence 865
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=264.85 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=134.2
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC-CCCCCCCCceeeccCC------------CceeEEEEec
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHT------------RRVKKLAVEV 157 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~------------~~v~~l~~~p 157 (737)
.+...|++++|+|+ +.+|++|+.||.|+|||+....... .....+.....+.+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 36789999999999 7999999999999999998643211 0011123466778898 8899999999
Q ss_pred CCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCC--CCCc-----------cceEE--EeccCCceeeccCCCCCccceEEE
Q 004685 158 GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGS--SHQE-----------CRNIL--LDLRCGAKRSLADPPKQTLSLKSC 221 (737)
Q Consensus 158 ~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~--~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i 221 (737)
++. .+|++++.|+.|++||+........... .+.. ....+ ................|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 533 6888999999999999976432100000 0000 00000 000000000011235688899999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeC
Q 004685 222 DISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS 299 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~ 299 (737)
+|+|+ +++|++| .|+.|++||++.. ..+..+... +..+ .+|.. .|++++|+|++ .+|++|+.
T Consensus 184 ~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~--~~~~~-~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 184 SINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIK-----------PANM--EELTE-VITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECC-----------CSSG--GGCCC-CEEEEEECSSCTTEEEEEET
T ss_pred EEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecc-----------cccc--cccCc-ceEEEEECCCCCcEEEEEeC
Confidence 99997 6899998 7999999999843 222111000 0011 12333 69999999998 99999999
Q ss_pred CCeEEEEEcCCCC
Q 004685 300 GEHVYLMDVNHAG 312 (737)
Q Consensus 300 dg~v~iwd~~~~~ 312 (737)
||.|++||+.++.
T Consensus 248 dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 248 KGTIRLCDMRASA 260 (447)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCeEEEEECcCCc
Confidence 9999999998854
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.4e-27 Score=255.64 Aligned_cols=224 Identities=11% Similarity=0.034 Sum_probs=166.8
Q ss_pred ccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc----ccCccceEEEE
Q 004685 27 NHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTK 100 (737)
Q Consensus 27 ~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~ 100 (737)
++.+.+|.... .+.+....+..+. .+.+++|+|++.++++++.++.|++||+.+++....+. .+|...|.+++
T Consensus 98 ~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 98 ELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp GGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 33345554323 3345666666554 46699999988888888899999999999998876321 47888999999
Q ss_pred EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~ 180 (737)
|+|+ +.++++++.|+.|++||+.... ....+..|...+.+++|+|++..++++++.|+.|++||++++
T Consensus 177 ~~~~--~~~~~s~~~d~~v~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 177 IPEH--NELWVSQMQANAVHVFDLKTLA----------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp EGGG--TEEEEEEGGGTEEEEEETTTCC----------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EcCC--CEEEEEECCCCEEEEEECCCce----------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 9998 7899999999999999998532 256667889999999999965445567778999999999876
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--------CCCcEEEEECCCCCCcc
Q 004685 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLT 252 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--------~Dg~i~iwd~~~~~~~~ 252 (737)
+.. .... ....+.+++|+|+ ++.+++++ .|+.|++||+++++.+.
T Consensus 245 ~~~-------------------------~~~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 245 LEI-------------------------RKTD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp EEE-------------------------EECC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred cEE-------------------------EEec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 521 1111 1235889999997 46777777 58899999998765433
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCC
Q 004685 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~dg~v~iwd~~~~~ 312 (737)
.+. +.. .+.+++|+|+++++ ++++.++.|++||+.+++
T Consensus 298 ~~~---------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 298 TIG---------------------PPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEE---------------------EEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred ecc---------------------CCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 221 111 48889999999866 455779999999998743
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.8e-27 Score=238.84 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=126.7
Q ss_pred cccceeecccCC----ceEEEEEcCCCC---EEEEEeCCCcEEEEECCCC---eEEEEEcccCccceEEEEEeeCCCCCE
Q 004685 40 LSQERELEGHQG----CVNAISWNSKGS---LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDEL 109 (737)
Q Consensus 40 ~~~~~~l~~H~~----~V~~l~~s~~g~---~lasgs~dg~V~vwd~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~~ 109 (737)
++.+.+|+...+ .+.++.|-..+. -++++++ ..|++|+...+ +.++++ ..|+.+|..+.+.|+. .++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~ 101 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-YNL 101 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-CSC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-cce
Confidence 455566665544 255666655332 4556665 69999999988 888888 7899999999999986 555
Q ss_pred EEEEECCCcEE-EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCC
Q 004685 110 VVSGAGDAEVR-LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 110 l~sgs~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~ 186 (737)
+..+-.+-.+. ++-+.-... ...+.......+|...|.++ + +++++.+++ .|+.|++|++....
T Consensus 102 ~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG----- 168 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDG----- 168 (356)
T ss_dssp EEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTS-----
T ss_pred eeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCC-----
Confidence 55443322111 111111000 00001111112333333332 2 444554433 46777777764321
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004685 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (737)
+ .+.....|...+..++|+| .++.+|++++.|++|+|||+++++.+.++...
T Consensus 169 -----------------~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~------- 222 (356)
T 2w18_A 169 -----------------G--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID------- 222 (356)
T ss_dssp -----------------C--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred -----------------c--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC-------
Confidence 1 1222224556677777777 23689999999999999999998876665311
Q ss_pred cccccccccCCCCcccceeEEEEcCCCCEEE------------EEeCCCeEEEEEcCCC
Q 004685 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL------------LSYSGEHVYLMDVNHA 311 (737)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~------------~g~~dg~v~iwd~~~~ 311 (737)
......+.+++|+|+|.+++ +|+.|++|++||..++
T Consensus 223 -----------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 223 -----------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp -----------C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred -----------CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 01112478889999999874 4666788888887764
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.8e-27 Score=259.02 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=135.1
Q ss_pred EEEEEcccCccce-EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685 84 LLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (737)
Q Consensus 84 ~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 162 (737)
....+ .+|...| .+ +.++ +++|++|+.||.|++||+... +.+..+.+|...|.++.|++ .+
T Consensus 110 ~~~~l-~~h~~~v~~~--~~~~--g~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~ 171 (445)
T 2ovr_B 110 SPKVL-KGHDDHVITC--LQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMRD---NI 171 (445)
T ss_dssp CCEEE-ECSTTSCEEE--EEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEET---TE
T ss_pred eeEEe-cccCCCcEEE--EEEc--CCEEEEEECCCcEEEEECCCC----------cEEEEEcCCCCCEEEEEecC---CE
Confidence 34455 6888765 55 4555 689999999999999999863 23677889999999999974 68
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (737)
Q Consensus 163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i 242 (737)
+++|+.||.|++||+.+++. +.....|...|.+++|++ ..+++|+.|+.|++
T Consensus 172 l~s~~~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGEC-------------------------IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRV 223 (445)
T ss_dssp EEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEE
T ss_pred EEEEeCCCeEEEEECCcCcE-------------------------EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEE
Confidence 99999999999999987652 222335778899999974 58999999999999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 322 (737)
||+++++.+..+. +|.. .|.+++| ++.++++|+.||.|++||+.+++.......+..
T Consensus 224 wd~~~~~~~~~~~--------------------~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 280 (445)
T 2ovr_B 224 WDIETGQCLHVLM--------------------GHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 280 (445)
T ss_dssp EESSSCCEEEEEE--------------------CCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred EECCCCcEEEEEc--------------------CCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC
Confidence 9999876544331 2322 5999998 788999999999999999998655444444444
Q ss_pred CCeeeee
Q 004685 323 ASKIMSF 329 (737)
Q Consensus 323 ~~~~~~~ 329 (737)
.+..++|
T Consensus 281 ~v~~~~~ 287 (445)
T 2ovr_B 281 RVYSLQF 287 (445)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 4444443
No 108
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.1e-27 Score=249.43 Aligned_cols=244 Identities=15% Similarity=0.156 Sum_probs=189.7
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004685 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV 96 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V 96 (737)
..+.+.++++++|+....+.....+|++|.++|++++|+| ++++|++|+.|++|+|||+.+++ ....+ .+|...|
T Consensus 28 lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V 106 (316)
T 3bg1_A 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSV 106 (316)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCC
T ss_pred EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCce
Confidence 3456788999999955444456788999999999999986 48999999999999999998874 55566 7899999
Q ss_pred EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC----------------C
Q 004685 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------P 160 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----------------~ 160 (737)
.+++|+|+..+.+|++|+.|+.|++||++.... ......+.+|...|.+++|+|+. +
T Consensus 107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (316)
T 3bg1_A 107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI 179 (316)
T ss_dssp CEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCC
T ss_pred EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------cceeeeeccccCCcceEEEccccCCccccccccccCcccc
Confidence 999999974467999999999999999985321 11134567899999999999852 3
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---CcEEEEEeCC
Q 004685 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSD 237 (737)
Q Consensus 161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~~l~t~s~D 237 (737)
.+|++|+.|++|++||++.... ...+..+..|...|.+++|+|+. +.+|++++.|
T Consensus 180 ~~l~sgs~D~~v~lWd~~~~~~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 180 KRFASGGCDNLIKLWKEEEDGQ----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp CBEECCBTTSBCCEEEECTTSC----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ceEEEecCCCeEEEEEeCCCCc----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 6899999999999999965421 01233445788899999999974 3789999999
Q ss_pred CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+.|++||++....... . ...+ .+|. ..|.+++|+|++++|++++.|+.|++|+....
T Consensus 238 ~~v~iw~~~~~~~~~~---------~-----~~~~--~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTW---------S-----PKLL--HKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CEEEEEECSSTTCCCC---------B-----CCEE--EECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CeEEEEEccCccccch---------h-----hhhh--hcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 9999999976321000 0 0001 1122 26999999999999999999999999998743
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=6.3e-27 Score=255.46 Aligned_cols=218 Identities=18% Similarity=0.305 Sum_probs=181.7
Q ss_pred CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp 103 (737)
.+.++.|++|+ ..+.+....+.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++
T Consensus 149 g~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 149 GLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN 223 (435)
T ss_dssp EESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT
T ss_pred EeCCCeEEEEe--CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC
Confidence 45678899999 5677888999999999999998 7899999999999999999999999999 78999999999964
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (737)
Q Consensus 104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~ 183 (737)
.++++|+.||.|++||+...... .....+.+|...|.++.| ++.++++|+.||.|++||+++++..
T Consensus 224 ----~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 224 ----GMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp ----TEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred ----CEEEEeeCCCcEEEEeCCCCCCc-------eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEE
Confidence 58999999999999999864321 113667789999999999 3478999999999999999887522
Q ss_pred CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (737)
.....|...+.+++|+ +.++++|+.||.|++||+++++.+..+
T Consensus 290 -------------------------~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~--------- 332 (435)
T 1p22_A 290 -------------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL--------- 332 (435)
T ss_dssp -------------------------EEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred -------------------------EEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE---------
Confidence 1223466788999985 369999999999999999987655443
Q ss_pred ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+|.. .|.+++| ++.+|++|+.||.|++||+.++
T Consensus 333 -----------~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 333 -----------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -----------CCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred -----------eCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 22333 5999988 7889999999999999998763
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=250.25 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=136.4
Q ss_pred EECCCCeEEEEEcccCccceEEEEEeeCC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE
Q 004685 77 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155 (737)
Q Consensus 77 wd~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 155 (737)
|+....+.+..+ .+|...|++++|+|+. ++.+|++|+.||.|++||+..... .....+.+|...|++++|
T Consensus 24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW 94 (368)
T ss_dssp CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence 445556666666 7999999999999981 128999999999999999985221 123677889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE--ecCCCcEEEE
Q 004685 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV 233 (737)
Q Consensus 156 ~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~t 233 (737)
+| ++.+|++++.||.|++||+.+++.. ....|...|.+++| +|+ +.+|++
T Consensus 95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~ 146 (368)
T 3mmy_A 95 SD-DGSKVFTASCDKTAKMWDLSSNQAI--------------------------QIAQHDAPVKTIHWIKAPN-YSCVMT 146 (368)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEEEECSS-CEEEEE
T ss_pred Cc-CCCEEEEEcCCCcEEEEEcCCCCce--------------------------eeccccCceEEEEEEeCCC-CCEEEE
Confidence 99 6689999999999999999876521 01236778999999 776 589999
Q ss_pred EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++.|+.|++||+++++.+..+.. +. .+.++.+. +..+++++.++.+.+|++...
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~~~--------------------~~--~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVLQL--------------------PE--RCYCADVI--YPMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEEEC--------------------SS--CEEEEEEE--TTEEEEEEGGGCEEEEECSSS
T ss_pred ccCCCcEEEEECCCCcEEEEEec--------------------CC--CceEEEec--CCeeEEEeCCCcEEEEEeccc
Confidence 99999999999998776544421 11 35556555 458999999999999999874
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=2.7e-26 Score=246.43 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=140.5
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (737)
.++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+|+ +.++ ++++.|+.|++||+.... .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~----------~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN----------VIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE----------EEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECCC--CCEEEEECCCCCeEEEEECCCCe----------EEE
Confidence 46889999999999999999998888 555 45899999999 6765 677799999999997532 244
Q ss_pred eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE
Q 004685 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (737)
Q Consensus 142 ~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (737)
.+..+ ..+.+++|+|++..++++++.++.|++||+.+++.. .. + .+...+.++
T Consensus 69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------~~--------~----~~~~~~~~~ 121 (391)
T 1l0q_A 69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GT--------V----KTGKSPLGL 121 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EE--------E----ECSSSEEEE
T ss_pred EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------EE--------E----eCCCCcceE
Confidence 44434 489999999965445566777899999999876522 00 0 012357899
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCC
Q 004685 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSG 300 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~d 300 (737)
+|+|++..++++++.|+.|++||+++++.+..+. .+. .+..++|+|++++| ++++.+
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~--~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------------------VGR--SPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------CCS--SEEEEEECTTSSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--------------------cCC--CcceEEECCCCCEEEEEeCCC
Confidence 9999853344788889999999998876443331 111 37899999999988 456678
Q ss_pred CeEEEEEcCCC
Q 004685 301 EHVYLMDVNHA 311 (737)
Q Consensus 301 g~v~iwd~~~~ 311 (737)
+.|++||+.++
T Consensus 180 ~~v~~~d~~~~ 190 (391)
T 1l0q_A 180 MSISVIDTVTN 190 (391)
T ss_dssp TEEEEEETTTT
T ss_pred CEEEEEECCCC
Confidence 99999998874
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-27 Score=249.66 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=149.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 136 (737)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+...... ..+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~~~ 113 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDSKT 113 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-EeecCC
Confidence 445688899999999999999999999888873 567888888875 99999999999998763110 000000
Q ss_pred CCCceee-ccCCCceeEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685 137 ITPSALY-QCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (737)
Q Consensus 137 ~~~~~~~-~~h~~~v~~l~~~p--~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (737)
...+..+ ..|...|.+++|+| ++ .++++++.||+|++||+++++.. ......
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~------------------------~~~~~~ 168 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY------------------------IVHSAK 168 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE------------------------EEECCC
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE------------------------EEEecC
Confidence 1112222 35778999999999 54 78999999999999999987521 000112
Q ss_pred CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc-ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (737)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~ 292 (737)
+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+. .+|.. +|++++|+|+|.
T Consensus 169 ~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h~~-~v~~l~fs~~g~ 227 (343)
T 3lrv_A 169 SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDEEA-KIKEVKFADNGY 227 (343)
T ss_dssp SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCTTS-CEEEEEECTTSS
T ss_pred CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccCCC-CEEEEEEeCCCC
Confidence 3456899999997 689999999999999999987654 2221 11333 699999999999
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 004685 293 EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 293 ~l~~g~~dg~v~iwd~~~~ 311 (737)
+|++++. +.|++||+++.
T Consensus 228 ~l~s~~~-~~v~iwd~~~~ 245 (343)
T 3lrv_A 228 WMVVECD-QTVVCFDLRKD 245 (343)
T ss_dssp EEEEEES-SBEEEEETTSS
T ss_pred EEEEEeC-CeEEEEEcCCC
Confidence 9999994 59999999874
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=9.5e-26 Score=242.17 Aligned_cols=224 Identities=7% Similarity=0.100 Sum_probs=170.0
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~ 100 (737)
.....++.|++|+ ..+.+....+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+ ..+ ..+.+++
T Consensus 6 vs~~~d~~v~v~d--~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~-~~v~~~~ 80 (391)
T 1l0q_A 6 IANSESDNISVID--VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAG-SSPQGVA 80 (391)
T ss_dssp EEETTTTEEEEEE--TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECS-SSEEEEE
T ss_pred EEcCCCCEEEEEE--CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECC-CCccceE
Confidence 3455678999999 45667777888775 48999999999976 67779999999999999998887 444 3899999
Q ss_pred EeeCCCCCEEE-EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685 101 FVPETSDELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 101 ~sp~~~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
|+|+ +.+|+ +++.++.|++||+.... .+..+. +...+.+++|+|++..++++++.|+.|++||+.+
T Consensus 81 ~spd--g~~l~~~~~~~~~v~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 81 VSPD--GKQVYVTNMASSTLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp ECTT--SSEEEEEETTTTEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ECCC--CCEEEEEECCCCEEEEEECCCCe----------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 9999 67664 55567999999998632 134444 4457899999995544557888999999999987
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (737)
++.. .. + .. ...+.+++|+|++..++++++.|+.|++||+++++.+..+.
T Consensus 148 ~~~~-----------~~-----------~---~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---- 197 (391)
T 1l0q_A 148 KAVI-----------NT-----------V---SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---- 197 (391)
T ss_dssp TEEE-----------EE-----------E---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----
T ss_pred CcEE-----------EE-----------E---ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----
Confidence 6522 00 0 01 23468999999854444788889999999998765433321
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe---CCCeEEEEEcCCC
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNHA 311 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~---~dg~v~iwd~~~~ 311 (737)
+. ..+.+++|+|+|++|++++ .++.|++||+.++
T Consensus 198 -----------------~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 198 -----------------VE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp -----------------CS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred -----------------cC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 11 1488999999999999998 6899999998874
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=3.5e-26 Score=246.74 Aligned_cols=256 Identities=15% Similarity=0.213 Sum_probs=200.1
Q ss_pred CCCccccccccccccc-c-cccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccC
Q 004685 23 RPDVNHSLQMHSSLVR-R-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGH 92 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~-~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h 92 (737)
....++.|.+|+.... + .+....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+ .+|
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h 130 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGH 130 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECC
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCC
Confidence 3566789999984221 1 245667889999999999999 9999999999999999999987 556677 789
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
...|.+++|+|++ ..+|++|+.|+.|++||+.... .+..+ ..|...|.+++|+| ++.+|++++.|+
T Consensus 131 ~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 198 (402)
T 2aq5_A 131 TKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGA----------AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDK 198 (402)
T ss_dssp SSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTE----------EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTS
T ss_pred CCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCC----------ccEEEecCCCCCceEEEEECC-CCCEEEEEecCC
Confidence 9999999999993 3799999999999999998632 25566 78999999999999 668899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC-CCCcc-ceEEEEEecCCCcEEEEE---eCCCcEEEEEC
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-PKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDR 245 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~i~~sp~~~~~l~t~---s~Dg~i~iwd~ 245 (737)
.|++||+++++.+ ... ..|.. .+.++.|+|+ +.+|++| +.|+.|++||+
T Consensus 199 ~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 199 RVRVIEPRKGTVV-------------------------AEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp EEEEEETTTTEEE-------------------------EEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEET
T ss_pred cEEEEeCCCCcee-------------------------eeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcC
Confidence 9999999886522 111 12333 3789999997 6889998 79999999999
Q ss_pred CCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc-ceeee--ec
Q 004685 246 RMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAMRY--TV 320 (737)
Q Consensus 246 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~-~~~~~--~~ 320 (737)
++... +.... ..+. ..+.+++|+|++++|++++ .||.|++||+.+++. ...+. .+
T Consensus 253 ~~~~~~~~~~~-------------------~~~~-~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 253 KHLEEPLSLQE-------------------LDTS-SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp TBCSSCSEEEE-------------------CCCC-SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred ccccCCceEEe-------------------ccCC-CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence 97653 11110 1122 2589999999999997555 699999999998764 22332 24
Q ss_pred CCCCeeeeeccCCCCcc
Q 004685 321 GDASKIMSFTPTLNGLE 337 (737)
Q Consensus 321 ~~~~~~~~~~p~~~~~~ 337 (737)
...+..++|+|+...+.
T Consensus 313 ~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 313 KESQRGMGYMPKRGLEV 329 (402)
T ss_dssp SSCCSEEEECCGGGSCG
T ss_pred CCcccceEEecccccce
Confidence 58899999999865543
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-27 Score=253.48 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=169.2
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~ 101 (737)
.+++.|++++ + ++....+.+|...|.+++|+|+| .++.+.+|+.+.. ..+...|...|.+++|
T Consensus 31 ASas~D~TV~--d-----~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~~~~~~~~~~V~~vaw 93 (588)
T 2j04_A 31 LTTFPDISIG--Q-----PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---GLLNSQPVCYPRVCKP 93 (588)
T ss_dssp EECSSSEEEE--E-----ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---CSSTTSCSCCEEEEEE
T ss_pred EEEcCCceee--c-----ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc---eEeecCCCCcEEEEEE
Confidence 4467777777 3 44445668999999999999999 4556555554322 2232256889999999
Q ss_pred eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC-----ceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (737)
Q Consensus 102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~l~s~s~Dg~I~vwd 176 (737)
+|+ |.+|++++.||.|++||... .+..+. |.. .|.+++|+| ++++|++|+.||+|++||
T Consensus 94 SPd--G~~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 94 SPI--DDWMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp CSS--SSCEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEE
T ss_pred CCC--CCEEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence 999 79999999999999999542 144455 554 599999999 679999999999999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeec-cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
+..+..... ..+.. ..+ ....+|...|.+++|+|+ + +++++.|+.|++||+........
T Consensus 158 ~~~~~l~~~--------~~i~l-------~ti~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~-- 217 (588)
T 2j04_A 158 IRKNSENTP--------EFYFE-------SSIRLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPV-- 217 (588)
T ss_dssp CCCCTTTCC--------CCEEE-------EEEECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCC--
T ss_pred CCCCccccc--------cceee-------eeeecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccc--
Confidence 988642100 00000 001 112356789999999996 4 88999999999999987552100
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee--ccC
Q 004685 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF--TPT 332 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~p~ 332 (737)
... +. .+|. ..|.+++|+ |.+|++++ ++.|++||+..+.......++...+..++| +|+
T Consensus 218 --------~~t-----L~-~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 218 --------SRM-----IQ-NASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp --------EEE-----EE-CCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred --------eee-----ec-cccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence 000 00 1232 259999999 68888887 699999999986543444466666677777 553
No 116
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-26 Score=242.50 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=196.9
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEE
Q 004685 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~ 98 (737)
..+.++.|++|+....+.+....+.+|.++|++++|+++ +++|++|+.||.|++||+.+++ .+..+ ..|...|.+
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~ 106 (379)
T 3jrp_A 28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS 106 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEE
Confidence 455788999999665577888999999999999999987 9999999999999999999987 66666 689999999
Q ss_pred EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC------------CCcEEEEE
Q 004685 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA 166 (737)
Q Consensus 99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~l~s~ 166 (737)
++|+|+..+.+|++++.|+.|++||+...... ....+..|...|.+++|+|. ++.+|+++
T Consensus 107 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 99999832489999999999999999864322 24567789999999999995 46899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEEEE
Q 004685 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD 244 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~iwd 244 (737)
+.|+.|++||++..... ...+.....|...|.+++|+|+. +.+|++++.||.|++||
T Consensus 179 ~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred eCCCeEEEEEecCCCcc---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 99999999999876521 01122334677899999999974 68999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
++......... ......+ ...|++++|+|++++|++++.||.|++|++....
T Consensus 238 ~~~~~~~~~~~---------------~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 238 QDNEQGPWKKT---------------LLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ESSTTSCCEEE---------------ESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCCCccceee---------------eeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 98764211100 0000112 2369999999999999999999999999998754
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=5.1e-26 Score=240.99 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=78.2
Q ss_pred eEEEeeecccccceeeeecccCCCCEEEEecCCCc-EEEEEcCcccEEEEee-c-CCCceEEEEecCCCCeEEEEecCCc
Q 004685 616 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT 692 (737)
Q Consensus 616 ~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~-i~iWd~~t~~~~~~l~-g-H~~~V~~v~~sp~~~~l~S~~~Dg~ 692 (737)
.+.+.+|.+.++++. |+|||++||||+.|++ |+|||+.+++++..|. | |.+.|++++|+|++++|+|++.|++
T Consensus 188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 457889999998887 9999999999999998 9999999999999999 7 9999999999999999999999999
Q ss_pred EEEEcCCCCC
Q 004685 693 IKIWTPSASV 702 (737)
Q Consensus 693 i~lW~~~~~~ 702 (737)
|+|||+..+.
T Consensus 264 v~iw~~~~~~ 273 (355)
T 3vu4_A 264 LHVFEIFNDQ 273 (355)
T ss_dssp EEEEESSCCS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=4.6e-26 Score=242.15 Aligned_cols=231 Identities=13% Similarity=0.079 Sum_probs=172.4
Q ss_pred Cccccccccccccccc--cccee-----ecccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccc
Q 004685 25 DVNHSLQMHSSLVRRL--SQERE-----LEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSAN 95 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~~~~~-----l~~H~~~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~ 95 (737)
..++.+++|+...... +.... ...+...+.+++|||||++||++ +.|++|+|||+.+++.+..+ .|...
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~ 178 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGE 178 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSC
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCc
Confidence 3466777776322211 11111 22345568999999999998755 47899999999999998887 37788
Q ss_pred eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC----c
Q 004685 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----T 171 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg----~ 171 (737)
|.+++|+|+ +.+|++++.++ +++|+....... .......|...|.+++|+| ++.++++++.|+ .
T Consensus 179 V~~v~fspd--g~~l~s~s~~~-~~~~~~~~~~~~--------~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 179 VKDLHFSTD--GKVVAYITGSS-LEVISTVTGSCI--------ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIV 246 (365)
T ss_dssp CCEEEECTT--SSEEEEECSSC-EEEEETTTCCEE--------EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEE
T ss_pred eEEEEEccC--CceEEecccee-EEEEEeccCcce--------eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeE
Confidence 999999999 79999998554 566665543211 1234557888999999999 668888988887 5
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
++.|++...... .........|...|++++|+|+ +++||+|+.|+.|+|||+++++.+
T Consensus 247 i~~~~~~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 247 LTKISIKSGNTS---------------------VLRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp EEEEEEETTEEE---------------------EEEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEE
T ss_pred Eeecccccceec---------------------ceeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEE
Confidence 788888765411 0112223356778999999997 689999999999999999988765
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
..+. .+|.. .|++|+|+|||++|++|+.|++|+|||+...
T Consensus 305 ~~~~-------------------~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 305 KIFK-------------------QAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEET-------------------TSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEec-------------------CcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4432 33444 6999999999999999999999999999753
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=4.9e-25 Score=240.01 Aligned_cols=248 Identities=19% Similarity=0.230 Sum_probs=191.2
Q ss_pred CCCCcccccccccccc--------cccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-------E
Q 004685 22 TRPDVNHSLQMHSSLV--------RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-------L 85 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~-------~ 85 (737)
.....++.|++|+... ...++..++.+|...|++|+|+|++. +|++|+.||.|++||+.++.. .
T Consensus 145 at~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 224 (430)
T 2xyi_A 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK 224 (430)
T ss_dssp EEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS
T ss_pred EEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc
Confidence 3445678899999543 22678889999999999999999988 999999999999999987322 3
Q ss_pred EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
..+ ..|...|.+++|+|+. +.+|++++.||.|++||++.... ..+...+..|...|++++|+|.+..+|++
T Consensus 225 ~~~-~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 225 NIF-TGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp EEE-CCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred eee-cCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence 445 6899999999999954 78999999999999999996431 13366777899999999999977668999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
|+.||.|++||++..... +.....|...|.+++|+|++..+|++++.|+.|++||+
T Consensus 296 g~~dg~v~vwd~~~~~~~------------------------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 296 GSADKTVALWDLRNLKLK------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp EETTSEEEEEETTCTTSC------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred EeCCCeEEEEeCCCCCCC------------------------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999975421 22223467889999999986678999999999999999
Q ss_pred CCCCCcccccC-CCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 004685 246 RMLPPLTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~ 310 (737)
+.......... ...++..+.. ..+|. ..|++++|+|++. +|++++.||.|++|++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~-------~~~h~-~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFI-------HGGHT-AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEE-------CCCCS-SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCccccCccccccCCcceEEE-------cCCCC-CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 86432110000 0000000000 12233 3699999999999 899999999999999986
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=6.7e-25 Score=230.43 Aligned_cols=268 Identities=13% Similarity=0.143 Sum_probs=191.2
Q ss_pred CCCCcccccccccccccc--cccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------eEEEEE
Q 004685 22 TRPDVNHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSI 88 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~---------~~~~~~ 88 (737)
...+.++.|++|+..... .+....+.+|...|++++|+| ++++|++|+.||.|++||+.++ +.+..+
T Consensus 27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 345678899999954322 256778899999999999999 6999999999999999999887 556677
Q ss_pred cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC--C-CCCceeeccCCCceeEEEEecC--CCcEE
Q 004685 89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN--A-ITPSALYQCHTRRVKKLAVEVG--NPHVV 163 (737)
Q Consensus 89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~-~~~~~~~~~h~~~v~~l~~~p~--~~~~l 163 (737)
..|...|.+++|+|+.++.+|++++.||.|++||++.......-.. . .........|...+.+++|+|. ++.++
T Consensus 107 -~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 -NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp -CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred -cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 7899999999999983248999999999999999986443211000 0 0000111257889999999995 37899
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC---cEEEEEeCCCcE
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFA 240 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~t~s~Dg~i 240 (737)
++++.|+.+.+|+...+.. ..+.....|...|.+++|+|+++ ++|++++.||.|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKL-----------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp EEEETTEEEEEEECTTSCE-----------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred EEecCCCcEEEEccCCCce-----------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 9999999998887766541 12334456788999999999742 799999999999
Q ss_pred EEEECCCCCCcccccCCCCCCCCc-------------------------cccccccc-cCCCCcccceeEEEEcCCCCEE
Q 004685 241 RLYDRRMLPPLTSCQKRMSPPPCV-------------------------NYFCPMHL-SEHGRSSLHLTHVTFSPNGEEV 294 (737)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l 294 (737)
++||++.................. .......+ ...+|.. .|++++|+|++++|
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEE
Confidence 999998753221111000000000 00000000 0123433 69999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCcc
Q 004685 295 LLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 295 ~~g~~dg~v~iwd~~~~~~~ 314 (737)
++++.||.|++|++.+++..
T Consensus 322 ~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEETTSCEEEEEECTTSCE
T ss_pred EEecCCCcEEEEecCcCcch
Confidence 99999999999999986543
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3e-24 Score=239.51 Aligned_cols=229 Identities=11% Similarity=0.128 Sum_probs=164.9
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEcccCccceEEE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCT 99 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~--~~~~~~~~~~~~h~~~V~~v 99 (737)
.....+++|.+|+ ..+.+.+.++..+.. +.+++|+|+|++|++++.|+.|++||+ .+++.+..+ . +...+..+
T Consensus 153 vs~~~d~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~v 227 (543)
T 1nir_A 153 VTLRDAGQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSV 227 (543)
T ss_dssp EEEGGGTEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEE
T ss_pred EEEcCCCeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceE
Confidence 3455678899998 556677888883333 899999999999999999999999999 888888888 3 45668999
Q ss_pred EEee----CCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc----------CC-CceeEEEEecCCCcEE
Q 004685 100 KFVP----ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVV 163 (737)
Q Consensus 100 ~~sp----~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~l~~~p~~~~~l 163 (737)
+|+| + +.+|++++ .+++|.+||..+.+ ++..+.. |. ..+..+.++|+++.++
T Consensus 228 a~sp~~~~d--g~~l~v~~~~~~~v~v~D~~t~~----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 228 ESSKFKGYE--DRYTIAGAYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EECCSTTCT--TTEEEEEEEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EeCCCcCCC--CCEEEEEEccCCeEEEEeccccc----------cceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 9999 8 78888887 48999999987632 2333332 22 3789999999887888
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE-EEEeCCCcEEE
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARL 242 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~t~s~Dg~i~i 242 (737)
++...++.|.+||+.+.+.+ . +. .+ .+...+..+.|+|++ ++| +++..++.|.+
T Consensus 296 vs~~~~g~i~vvd~~~~~~l-----------~-~~--------~i----~~~~~~~~~~~spdg-~~l~va~~~~~~v~v 350 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNL-----------T-VT--------SI----GAAPFLHDGGWDSSH-RYFMTAANNSNKVAV 350 (543)
T ss_dssp EEETTTTEEEEEECTTSSSC-----------E-EE--------EE----ECCSSCCCEEECTTS-CEEEEEEGGGTEEEE
T ss_pred EEECCCCeEEEEEecCCCcc-----------e-eE--------Ee----ccCcCccCceECCCC-CEEEEEecCCCeEEE
Confidence 89999999999999876522 0 00 01 012346678999985 555 45566899999
Q ss_pred EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEe-CCCeEEEEEcCC
Q 004685 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH 310 (737)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~-~dg~v~iwd~~~ 310 (737)
||+.+++.+..+.... ..|.+ ....+ ++|+ +..++++. .|++|.+||+.+
T Consensus 351 ~D~~tg~l~~~i~~g~----------------~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 351 IDSKDRRLSALVDVGK----------------TPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EETTTTEEEEEEECSS----------------SBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EECCCCeEEEeeccCC----------------CCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 9999887655443110 11221 12223 5787 55556654 589999999887
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=253.95 Aligned_cols=245 Identities=16% Similarity=0.179 Sum_probs=197.5
Q ss_pred CCCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceE
Q 004685 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVF 97 (737)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~ 97 (737)
...+.++.|++|+....+.+...++.+|.++|++++|+|+ +++|++|+.||.|++||+.+++ .+..+ ..|...|.
T Consensus 25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~ 103 (753)
T 3jro_A 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVN 103 (753)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEE
T ss_pred EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeE
Confidence 3456789999999665577888999999999999999987 9999999999999999999886 56666 78999999
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC------------CCcEEEE
Q 004685 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWS 165 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~l~s 165 (737)
+++|+|+.++.+|++|+.||.|++||++..... ....+.+|...|.+++|+|. ++.++++
T Consensus 104 ~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp EEEECCGGGCSEEEEEETTSEEEEEECCSSSCC--------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred EEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc--------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 999999833489999999999999999865322 24567789999999999995 4688999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEEE
Q 004685 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLY 243 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~iw 243 (737)
|+.||.|++||++.+... .........|...|.+++|+|+. +.+|++++.||.|++|
T Consensus 176 gs~dg~I~iwd~~~~~~~---------------------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 176 GGADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp EETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred EECCCeEEEEeccCCccc---------------------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 999999999999876421 01122334678899999999974 6899999999999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|++++....... .....++. ..|++++|+|+|.+|++|+.||.|++|++....
T Consensus 235 d~~~~~~~~~~~---------------~~~~~~~~-~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKT---------------LLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCC---------------BSSSSCCS-SCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeE---------------EeccCCCC-CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 998764211100 00001122 369999999999999999999999999998643
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=230.27 Aligned_cols=251 Identities=12% Similarity=0.058 Sum_probs=184.5
Q ss_pred ccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685 48 GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYS--SRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~--~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. ..|...|.+++|+|+ +.+|++|+.||.|++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGDVYSID 177 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCcEEEEe
Confidence 566689999999999996 899999999999999 888777762 156789999999999 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
+....... .+...+.+|...|++++|+|+ ++.+|++++.|+.|++||++++..+
T Consensus 178 ~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------------ 233 (450)
T 2vdu_B 178 INSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------------------ 233 (450)
T ss_dssp TTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------------------
T ss_pred cCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------------------
Confidence 98643211 024467789999999999994 1689999999999999999877532
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC-CCc-ccccccc--ccCCCC
Q 004685 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP-PCV-NYFCPMH--LSEHGR 277 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~ 277 (737)
......|...|.+++|+ + +.+|++++.|+.|++||+++++.+..+....... .+. ....+.. ......
T Consensus 234 ------~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 234 ------DKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp ------EEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred ------eeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 11133577899999999 5 6899999999999999999987665543110000 000 0000000 000001
Q ss_pred cccceeEEEEcCCCCEEEEEe-CCCeEEEEEc--CCCC--cceeeeecCCCCeeeeeccC
Q 004685 278 SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV--NHAG--GRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~--~~~~--~~~~~~~~~~~~~~~~~~p~ 332 (737)
....|.+++|+|++++|++++ .|+.|++|++ .++. ...........+..++|+|.
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 123599999999999999999 7999999999 4432 22222223367888999984
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=1e-24 Score=234.31 Aligned_cols=258 Identities=9% Similarity=0.091 Sum_probs=169.8
Q ss_pred CCCCCccccccccccccccc---ccceeecccCCceEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004685 21 DTRPDVNHSLQMHSSLVRRL---SQERELEGHQGCVNAISWNS--------KGSLLISGSDDTHINVWSYSSRKLLHSIE 89 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~H~~~V~~l~~s~--------~g~~lasgs~dg~V~vwd~~~~~~~~~~~ 89 (737)
..+.+.++++++|+...... .+...+.||.+.|++++|+| |+++||+|+.|++|+|||+.++..+..+
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~- 182 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG- 182 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-
Confidence 44567789999999554432 34556889999999999998 7899999999999999999988877777
Q ss_pred ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC---------------CCCCceeeccCCCceeEEE
Q 004685 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN---------------AITPSALYQCHTRRVKKLA 154 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------------~~~~~~~~~~h~~~v~~l~ 154 (737)
..|..+|.+++|+|+. +.+|++|+.|++|++||++.......... .........+|...+.++.
T Consensus 183 ~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred cCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 6789999999999983 45899999999999999986433211000 0001122356888999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec-CCCcEEEE
Q 004685 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLV 233 (737)
Q Consensus 155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t 233 (737)
|.+.++..|++++.|+++++||+..+................ ... .. ......+...+ ...|+| .++.++++
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~--~~~-~~---~~~~~~~~~~~-~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK--NLL-PN---VQGISLFPSLL-GACPHPRYMDYFATA 334 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC---------------------CCS-CS---EEEECSSCCSS-CCEECSSCTTEEEEE
T ss_pred eecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE--EEc-cc---cccccccCcce-eEEEccCCCCEEEEE
Confidence 986577899999999999999998776432221111000000 000 00 00001111222 334444 33456777
Q ss_pred EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
|+.||.|++||+.+++...... ++.. +|.+++|+|||++|++++.+| +.+|.+.
T Consensus 335 gs~Dg~V~lwd~~~~~~~~~~~--------------------~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDSNSIPI--------------------QLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ETTTTEEEEEETTCTTCCEEEE--------------------ECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ECCCCEEEEEECCCCcEEEEec--------------------CCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 8899999999999876543321 1222 699999999999999998765 6666554
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=4e-23 Score=224.93 Aligned_cols=206 Identities=9% Similarity=0.095 Sum_probs=146.3
Q ss_pred cCCceEEEE---EcCCCCEEEEEe--------------CCC--cEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCC
Q 004685 49 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD 107 (737)
Q Consensus 49 H~~~V~~l~---~s~~g~~lasgs--------------~dg--~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~ 107 (737)
....+..++ |+|++..++..+ .++ .|.+||..++ +.+..+ ..+ ..+.+++|+|+ +
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~ 134 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T 134 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence 345678888 888877665432 233 3444444334 455555 333 45669999996 7
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (737)
Q Consensus 108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~ 187 (737)
.++++++.|+.|++||+..+.... ......+.+|...|.+++|++ ++.++++++.|+.|++||+++++..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~---- 204 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK---- 204 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence 888888899999999998643211 001114567889999999988 6689999999999999999876521
Q ss_pred CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
.....+...+.+++|+|++..++++++.|+.|++||+++++.+..+.
T Consensus 205 ---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------ 251 (433)
T 3bws_A 205 ---------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------------ 251 (433)
T ss_dssp ---------------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC------------
T ss_pred ---------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec------------
Confidence 11113456789999999854444666689999999998776443321
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEe--------CCCeEEEEEcCCC
Q 004685 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNHA 311 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--------~dg~v~iwd~~~~ 311 (737)
.+ ..+.+++|+|+|++|++++ .|+.|++||+.++
T Consensus 252 --------~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 252 --------KI--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp --------CC--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred --------CC--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 11 1489999999999999998 4889999998763
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.8e-24 Score=223.10 Aligned_cols=243 Identities=9% Similarity=0.059 Sum_probs=181.0
Q ss_pred CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeEEEEEccc
Q 004685 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETG 91 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~---------~~~~~~~~~~~ 91 (737)
..+.+.++.|++|+ ..+.+.+.++. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+...
T Consensus 51 l~sg~~Dg~v~iwd--~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 51 CMCRCEDGALHFTQ--LKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEETTEEEEEE--ESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCCcEEEEE--CCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 45577889999999 45556666665 567889999998 9999999999999665 55556666457
Q ss_pred CccceEEEEEee--CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeC
Q 004685 92 HSANVFCTKFVP--ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 92 h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
|..+|.+++|+| + +.+|++|+.||.|++||++.... .... ..|...|++++|+| ++.+|++|+.
T Consensus 124 ~~~~v~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~----------~~~~~~~~~~~i~~~~~~p-dg~~lasg~~ 190 (343)
T 3lrv_A 124 SANEIIYMYGHNEVN--TEYFIWADNRGTIGFQSYEDDSQ----------YIVHSAKSDVEYSSGVLHK-DSLLLALYSP 190 (343)
T ss_dssp CSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCE----------EEEECCCSSCCCCEEEECT-TSCEEEEECT
T ss_pred CCCCEEEEEcCCCCC--CCEEEEEeCCCcEEEEECCCCcE----------EEEEecCCCCceEEEEECC-CCCEEEEEcC
Confidence 888999999999 7 79999999999999999986331 2333 34566899999999 6689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC-CccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
||.|++||+++++.. ...... |...|.+++|+|+ +.+|++++ |+.|++||+++
T Consensus 191 dg~i~iwd~~~~~~~------------------------~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 191 DGILDVYNLSSPDQA------------------------SSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp TSCEEEEESSCTTSC------------------------CEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTS
T ss_pred CCEEEEEECCCCCCC------------------------ccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCC
Confidence 999999999987632 012223 7789999999997 58999999 55999999998
Q ss_pred CCCcccccCCCCCCCCccccccccccCCCCcccce--eEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecCCCC
Q 004685 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL--THVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDAS 324 (737)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~ 324 (737)
.+.+..+.. + ..+ ...+ .+++|+|+|++|++++. |+.|++|++.+....-.. .++
T Consensus 245 ~~~~~~~~~----------~-------~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~ 302 (343)
T 3lrv_A 245 DVGTLAYPT----------Y-------TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE 302 (343)
T ss_dssp STTCBSSCC----------C-------BC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred CCcceeecc----------c-------ccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence 765443321 0 000 0123 46999999999999999 999999999775432222 334
Q ss_pred eeeeecc
Q 004685 325 KIMSFTP 331 (737)
Q Consensus 325 ~~~~~~p 331 (737)
..++|.|
T Consensus 303 ~~~~~~~ 309 (343)
T 3lrv_A 303 SALCLQS 309 (343)
T ss_dssp EECCC--
T ss_pred eeEecCc
Confidence 4555555
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.3e-23 Score=213.10 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=160.1
Q ss_pred ccccccccccccc-ccccceeecccCC-------------------------ceEEEEEcCC----CCEEEEEeC-----
Q 004685 26 VNHSLQMHSSLVR-RLSQERELEGHQG-------------------------CVNAISWNSK----GSLLISGSD----- 70 (737)
Q Consensus 26 ~~~~~~~~~~~~~-~~~~~~~l~~H~~-------------------------~V~~l~~s~~----g~~lasgs~----- 70 (737)
-+..+++|+.... ..+..+++.+|+. .|++|+|+|+ ++++++++.
T Consensus 61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~ 140 (356)
T 2w18_A 61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL 140 (356)
T ss_dssp ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence 3567889985432 2378888888875 4556667777 777777653
Q ss_pred ---------------CCcEEEEEC-CCCeEEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685 71 ---------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 71 ---------------dg~V~vwd~-~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 133 (737)
|+.|++|++ .+++.+..+ .+|...+..++|+| ++++.+|++++.|++|+|||+.++.
T Consensus 141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk----- 214 (356)
T 2w18_A 141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ----- 214 (356)
T ss_dssp EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----
T ss_pred ecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----
Confidence 888888888 447777776 68888888889998 3237899999999999999998743
Q ss_pred CCCCCCceeeccCC---CceeEEEEecCCCcEE------------EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685 134 DNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (737)
Q Consensus 134 ~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~ 198 (737)
.+..+.+|. ..+.+++|+| ++.++ ++|+.|++|++||..+++.+ ..+
T Consensus 215 -----~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-----------~v~- 276 (356)
T 2w18_A 215 -----LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-----------GVM- 276 (356)
T ss_dssp -----EEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEE-----------EEE-
T ss_pred -----EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-----------EEE-
Confidence 256676543 4677889999 55655 56888999999999877532 000
Q ss_pred eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
.+....+|...+.+..++ +.++++++.|++|+|||+.+++.+.++. +|.
T Consensus 277 --------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~--------------------gH~ 325 (356)
T 2w18_A 277 --------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLP--------------------PVS 325 (356)
T ss_dssp --------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEEC--------------------CC-
T ss_pred --------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEec--------------------CCC
Confidence 011122333334444444 4689999999999999999987665542 243
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
...+..++|+|||++|++|+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 323556899999999999999999999996
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.7e-23 Score=223.63 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=143.3
Q ss_pred CCceEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEEcccCccceEEEEEeeCC-----------
Q 004685 50 QGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPET----------- 105 (737)
Q Consensus 50 ~~~V~~l~~s~~g~-~lasgs----~dg----~V~vwd~--~~~~~~--~~~~~~h~~~V~~v~~sp~~----------- 105 (737)
...|...+|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+ .+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34778888988774 666886 467 8999999 888876 346 6788888887777510
Q ss_pred -CCCEEEEEECC------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEE
Q 004685 106 -SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQH 175 (737)
Q Consensus 106 -~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vw 175 (737)
.+..++.++.+ +.|++||+... ....+..|...+.+++|+| +++.|++++.++ .|++|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----------~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-----------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC-----------SCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC-----------CCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEE
Confidence 02456555544 79999999742 1566778999999999999 567888888775 99999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeCCCc--EEEEECCCCCCcc
Q 004685 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPLT 252 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~Dg~--i~iwd~~~~~~~~ 252 (737)
|+.+++.. .+ ..+...+.+++|+|++ +.|+ +++.|+. |++||+++++..
T Consensus 209 d~~tg~~~-----------------------~l---~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~- 260 (415)
T 2hqs_A 209 TLANGAVR-----------------------QV---ASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR- 260 (415)
T ss_dssp ETTTCCEE-----------------------EE---ECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred ECCCCcEE-----------------------Ee---ecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-
Confidence 99877521 11 1234578899999984 6565 6766655 999999876531
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC--eEEEEEcCCC
Q 004685 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA 311 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg--~v~iwd~~~~ 311 (737)
.+ ..+. ..+.+++|+|+|++|+.++. ++ .|++||+.++
T Consensus 261 ~l--------------------~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 261 QV--------------------TDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp EC--------------------CCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred eC--------------------cCCC-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 11 1122 25899999999999998887 44 6777777653
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.5e-22 Score=217.14 Aligned_cols=222 Identities=9% Similarity=0.034 Sum_probs=160.9
Q ss_pred cccccccccccccccccc--eeecccCCceEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCe
Q 004685 26 VNHSLQMHSSLVRRLSQE--RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK 83 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~~s~--------------~g~~lasgs~d------g~V~vwd~~~~~ 83 (737)
.+.++++|+....+.+.+ .++.+|...+..+++++ .+..++.++.+ +.|++||+..+
T Consensus 91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~- 169 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY- 169 (415)
T ss_dssp EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence 445899999511333444 66899999888888775 15666666554 79999999754
Q ss_pred EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC---cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004685 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (737)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 160 (737)
....+ ..|...+.+++|+|+ ++.|++++.++ .|++||+..+. ...+..|...+.+++|+|++.
T Consensus 170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSS
T ss_pred CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCC
Confidence 45556 578899999999999 79999999885 99999998633 344566888999999999553
Q ss_pred cEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-C
Q 004685 161 HVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D 237 (737)
Q Consensus 161 ~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-D 237 (737)
.++++++.|+. |.+||+.+++. .....+...+.+++|+|+ ++.|++++. +
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~--------------------------~~l~~~~~~~~~~~~spd-g~~l~~~s~~~ 288 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQI--------------------------RQVTDGRSNNTEPTWFPD-SQNLAFTSDQA 288 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE--------------------------EECCCCSSCEEEEEECTT-SSEEEEEECTT
T ss_pred EEEEEEecCCCceEEEEECCCCCE--------------------------EeCcCCCCcccceEECCC-CCEEEEEECCC
Confidence 34447777665 99999987651 112234567889999998 577777765 4
Q ss_pred C--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 004685 238 A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (737)
Q Consensus 238 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~ 311 (737)
+ .|++||+.+++... + ..+ ...+.+++|+|+|++|+.++.+ ..|++||+.++
T Consensus 289 g~~~i~~~d~~~~~~~~-l--------------------~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQR-I--------------------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SSCEEEEEETTSSCCEE-C--------------------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCcEEEEEECCCCCEEE-E--------------------ecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 5 67777887654211 1 001 1248899999999999988874 58999998874
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.3e-21 Score=218.14 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=148.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec--CCCCCCCCCC
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD 134 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~--~~~~~~~~~~ 134 (737)
+|+|++.++++++.|++|.+||..+++++..+..++. +.+++|+|+ +.+|++++.|+.|.+||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence 3889999999999999999999999999998843443 899999999 799999999999999999 432
Q ss_pred CCCCCceeeccCCCceeEEEEec----CCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
+.+..+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.+ ..+ ... . ....
T Consensus 213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~--g-~~~~ 272 (543)
T 1nir_A 213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STR--G-MTVD 272 (543)
T ss_dssp ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECC--E-ECSS
T ss_pred ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-ccc--C-cccC
Confidence 2245555 455689999999 66 5555555 5899999998877632 111 000 0 0000
Q ss_pred CCCCC-ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 210 ~~~~~-~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
....| ...+.++.++|+++.++++...++.|.+||+.+.+.+... . + . + ...+..++|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-----------~-----i-~--~-~~~~~~~~~s 332 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------S-----I-G--A-APFLHDGGWD 332 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-----------E-----E-E--C-CSSCCCEEEC
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-----------E-----e-c--c-CcCccCceEC
Confidence 00001 2367899999987778888889999999999876532210 0 0 0 0 1136779999
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCC
Q 004685 289 PNGEEVLLSYS-GEHVYLMDVNHAG 312 (737)
Q Consensus 289 p~g~~l~~g~~-dg~v~iwd~~~~~ 312 (737)
|+|++|++++. +++|.+||+.+++
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCe
Confidence 99998877664 8999999999853
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=2.6e-21 Score=234.17 Aligned_cols=237 Identities=10% Similarity=0.046 Sum_probs=153.6
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCccce-----
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV----- 96 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~~V----- 96 (737)
+.|.+|+. ... ....+.+|...|.+++|||||++||.++.+ ..|++||+.+++ ...+ ..|...+
T Consensus 33 ~~l~~~~~--~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~ 107 (1045)
T 1k32_A 33 DDLWEHDL--KSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRM 107 (1045)
T ss_dssp TEEEEEET--TTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEE
T ss_pred CcEEEEEC--CCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCccccccc
Confidence 35666663 222 356778899999999999999999987643 479999998887 4556 6788888
Q ss_pred --EEEEEeeCCCCCEEEEEECC------CcEEEEecCCCCCCCCCCCC----------------------C---------
Q 004685 97 --FCTKFVPETSDELVVSGAGD------AEVRLFNLSRFSGRGLDDNA----------------------I--------- 137 (737)
Q Consensus 97 --~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~----------------------~--------- 137 (737)
.+++|+|+ +.++++++.+ ..|.+|++............ +
T Consensus 108 ~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~ 185 (1045)
T 1k32_A 108 FTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG 185 (1045)
T ss_dssp CSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred ccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence 99999999 5777777754 35777776543211100000 0
Q ss_pred --------CCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 138 --------TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 138 --------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
.....+.+|...+.++.|++ + .++++++.|+.+.+|.+...... ...+.
T Consensus 186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~---------------------~~~l~ 242 (1045)
T 1k32_A 186 KIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD---------------------LRKHT 242 (1045)
T ss_dssp EEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS---------------------CEECC
T ss_pred CEEEECCCCCeEECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc---------------------ceEec
Confidence 01123356788889999988 4 67778888899999987642210 01111
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-
Q 004685 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS- 288 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s- 288 (737)
.+ ..+...+|+|+ ++.|+.+ .++.|++||+... .+..+....... .. .. ..+ ...+.+++|+
T Consensus 243 ---~~-~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~-~~------~~--~~~-~~~v~~~~~S~ 305 (1045)
T 1k32_A 243 ---SF-TDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLES-PE------DR--IIS-IPSKFAEDFSP 305 (1045)
T ss_dssp ---CC-CSSCEEEEEES-SSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCB-CC------SE--EEE-CGGGGEEEEEE
T ss_pred ---CC-CCcceeeEcCC-CCEEEEE-eCCEEEEecCCce-EeeeeccCcccc-cc------cc--ccc-ccccceeeecC
Confidence 11 13456799997 5677776 4899999998432 222221100000 00 00 001 1248899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 289 PNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|+|++|+.++ ++.|++|++..+.
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~ 328 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTY 328 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSB
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCc
Confidence 9999999888 7899999988754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=3e-20 Score=216.99 Aligned_cols=219 Identities=9% Similarity=0.030 Sum_probs=148.0
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEEcccCc------------------------cceEEE
Q 004685 50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHS------------------------ANVFCT 99 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~-dg-----~V~vwd~~~~~~~~~~~~~h~------------------------~~V~~v 99 (737)
...|.+++|+|||++|++++. |+ .|++||+.+++....+ ..+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999999998876665 3333 238899
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+|+|+ |++|++++. +.|++||+...... ....+..|...+.+++|+| ++++|+.++ ++.|.+||+.+
T Consensus 115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~--------~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD--AQRLLFPLG-GELYLYDLKQEGKA--------AVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT--SSEEEEEET-TEEEEEESSSCSTT--------SCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC--CCEEEEEeC-CcEEEEECCCCCcc--------eEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence 99999 799998886 99999999864100 1344566778899999999 567777776 46899999987
Q ss_pred CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---------------------
Q 004685 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------------------- 238 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg--------------------- 238 (737)
++......... . .+.. +....+.. .....+.+++|+|+ ++.|++++.|+
T Consensus 182 g~~~~~~~~~~-~--~~~~----g~~~~v~~--~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 182 GRQMQLTADGS-T--TIGN----GIAEFVAD--EEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEECCCCCC-S--SEEE----SCCCHHHH--HHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CCEEEeccCCc-c--ceec----cccceeee--eccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 65221000000 0 0000 00000000 00112477999998 57888877665
Q ss_pred ------------cEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-----C
Q 004685 239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G 300 (737)
Q Consensus 239 ------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-----d 300 (737)
.|++||+.+ ++....... ..+. ..+..++| |||++|+.++. +
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------------------~~~~-~~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLG------------------KEQD-IYLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCC------------------SCSS-EEEEEEEE-EETTEEEEEEEETTSSE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCC------------------CCcc-eEEEEEEe-CCCCEEEEEEecccCCe
Confidence 788889877 653221100 0122 25899999 99999998764 4
Q ss_pred CeEEEEEcCCCC
Q 004685 301 EHVYLMDVNHAG 312 (737)
Q Consensus 301 g~v~iwd~~~~~ 312 (737)
..|++||+.+++
T Consensus 312 ~~i~~~d~~~g~ 323 (741)
T 2ecf_A 312 LDLVEVTLASNQ 323 (741)
T ss_dssp EEEEEEETTTCC
T ss_pred EEEEEEECCCCc
Confidence 679999988753
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=3.6e-19 Score=186.66 Aligned_cols=196 Identities=14% Similarity=0.181 Sum_probs=126.9
Q ss_pred EEEEEeCCCcEEEEECC-CC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-CcEEEEecCCCCCCCCCCCCCCC
Q 004685 64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 64 ~lasgs~dg~V~vwd~~-~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
++++++.|+.|++||+. ++ +.+..+ .+...+.+++|+|+ +.+|++++.+ +.|.+|++....+. ...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~------~~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA------LTF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC------EEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCc------eee
Confidence 44555789999999995 33 333333 47778999999999 7888888876 99999999732221 112
Q ss_pred ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (737)
Q Consensus 140 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (737)
+..+..+. .+..++|+|++..+++++..++.|.+||+..+... ..+ .... ....+.
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------~~~-----------~~~~-~~~~~~ 132 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-----------GVV-----------DVVE-GLDGCH 132 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-----------EEE-----------EEEC-CCTTBC
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-----------ccc-----------cccc-CCCCce
Confidence 33344333 78999999955334445555889999999522100 000 0001 123477
Q ss_pred EEEEecCCCcEEEEEe-CCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685 220 SCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (737)
Q Consensus 220 ~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g 297 (737)
+++|+|++ +.+++++ .++.|++||+.+ ++..... .... ..+.+..+..++|+|+|++++++
T Consensus 133 ~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 133 SANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQD--------------PAEV--TTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp CCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEE--------------EEEE--ECSTTCCEEEEEECTTSSEEEEE
T ss_pred EEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeec--------------cccc--ccCCCCCcceEEECCCCCEEEEE
Confidence 89999974 6666665 899999999986 3321100 0000 00111247889999999988766
Q ss_pred e-CCCeEEEEEcCC
Q 004685 298 Y-SGEHVYLMDVNH 310 (737)
Q Consensus 298 ~-~dg~v~iwd~~~ 310 (737)
+ .++.|.+|++..
T Consensus 196 ~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 196 NELNSSVDVWELKD 209 (343)
T ss_dssp ETTTTEEEEEESSC
T ss_pred eCCCCEEEEEEecC
Confidence 6 689999999864
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=1.9e-19 Score=217.89 Aligned_cols=249 Identities=10% Similarity=-0.002 Sum_probs=162.9
Q ss_pred cccccccccccccccceeecccCCce-------EEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--------
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCV-------NAISWNSKGSLLISGSDD------THINVWSYSSRKLLH-------- 86 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V-------~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~-------- 86 (737)
..|.+|+.. ..+ ...|.+|...+ .+++|+|||+++++++.+ ..|.+|++.+++...
T Consensus 80 ~~i~~~d~~--~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~ 156 (1045)
T 1k32_A 80 ADLYFYNGE--NGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH 156 (1045)
T ss_dssp EEEEEEETT--TTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred CeEEEEECC--CCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence 456677633 322 56788898888 999999999988888754 458888876654321
Q ss_pred -----------------------------------------EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685 87 -----------------------------------------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 87 -----------------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
.+ .+|...+.++.|+++ .++++++.|+.+.||.+.
T Consensus 157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~ 232 (1045)
T 1k32_A 157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTD 232 (1045)
T ss_dssp EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEE
T ss_pred eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC---EEEEEEeccCceEEEEEe
Confidence 12 346677788888876 577788888999999876
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
..... ...+..|. .+...+|+| +++.|+.+ .++.|.+||+.... + ..+.....
T Consensus 233 ~~g~~---------~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~-l--------------~~l~~~~~ 285 (1045)
T 1k32_A 233 LDGKD---------LRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEK-I--------------EKIEIGDL 285 (1045)
T ss_dssp TTSCS---------CEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCC-E--------------EECCCCCC
T ss_pred CCCCc---------ceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCceE-e--------------eeeccCcc
Confidence 42211 33444444 356789999 45666665 48999999983322 1 01100000
Q ss_pred eeccCCCCCccceEEEEEe-cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 206 RSLADPPKQTLSLKSCDIS-STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~s-p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
........+...+.+++|+ |+ ++.|++++ ++.|++|++..+..... ..+....+..
T Consensus 286 ~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~ 342 (1045)
T 1k32_A 286 ESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLKV---------------------PEPLRIRYVR 342 (1045)
T ss_dssp CBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEEC---------------------SCCSCEEEEE
T ss_pred cccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEEc---------------------cCCCcceEEe
Confidence 0000000133468899999 97 57788777 78999999876542211 1122224889
Q ss_pred EEEcCCCCEEEEEeCCCeEE-EEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685 285 VTFSPNGEEVLLSYSGEHVY-LMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
++|+ +|+.|+.++.++.+. +|++..+...... .+...+..++|+|+.+.
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~ 392 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF 392 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCE
Confidence 9999 999999999988899 9999876543333 55566777888887543
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=1.5e-18 Score=181.28 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=133.4
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCC
Q 004685 57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDD 134 (737)
Q Consensus 57 ~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~ 134 (737)
.|.+++. .+++++.++.|.+||..+++.+..+ ..+...+ +++|+|+ ++++++++. ++.|.+||+.....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~----- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP----- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC-----
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce-----
Confidence 4555554 5778888999999999999988877 4555666 9999999 676655554 89999999986321
Q ss_pred CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
....+..+..+..+++|+| ++++++++..++ .|.+||+.+++.. .. +.
T Consensus 75 ----~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-----------~~-- 125 (331)
T 3u4y_A 75 ----KVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-----------IP-- 125 (331)
T ss_dssp ----EEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-----------EE--
T ss_pred ----eEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-----------EE--
Confidence 0344555556555599999 557776555443 8999999876522 00 00
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685 212 PKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~ 290 (737)
......+++|+|++..++++...++. |.+|++.....+.... ...+ ........++|+|+
T Consensus 126 --~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------~~~~----~~~~~~~~~~~spd 186 (331)
T 3u4y_A 126 --IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------QEFI----SGGTRPFNITFTPD 186 (331)
T ss_dssp --CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------EEEE----CSSSSEEEEEECTT
T ss_pred --CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------Cccc----cCCCCccceEECCC
Confidence 12345899999985446666677788 9999998543221100 0000 01113788999999
Q ss_pred CCEEEEEe-CCCeEEEEEcCCC
Q 004685 291 GEEVLLSY-SGEHVYLMDVNHA 311 (737)
Q Consensus 291 g~~l~~g~-~dg~v~iwd~~~~ 311 (737)
|+++++++ .++.|++||+.++
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSST
T ss_pred CCEEEEEeCCCCeEEEEECCCC
Confidence 99776666 5899999998874
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=2.4e-19 Score=187.50 Aligned_cols=175 Identities=6% Similarity=-0.045 Sum_probs=118.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCCCCCE-EEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
++|++++.++.|.+||+.+++.+..+..++.. .+.+++|+|+ +.. ++++..++.|.+||+..... +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~----------~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET----------L 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE----------E
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCCe----------E
Confidence 47899999999999999999988877323322 4889999999 555 46666789999999976321 2
Q ss_pred eeec-cC----CCceeEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 141 ALYQ-CH----TRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 141 ~~~~-~h----~~~v~~l~~~p~~~~~l~s~s------------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
..+. .+ ...+.+++|+| +++++++++ .++.|.+||+.+++.. .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~----- 129 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------K----- 129 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------E-----
T ss_pred eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--------------E-----
Confidence 2222 11 22577899999 556666665 5799999999876421 0
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
.+. ....+.+++|+|+ +++++++ ++.|++||+.+++.+..+... .. ..
T Consensus 130 ---~~~----~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------------------~~---~~ 177 (337)
T 1pby_B 130 ---AFE----APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------------------SW---EA 177 (337)
T ss_dssp ---EEE----CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEECST-------------------TT---TT
T ss_pred ---EEe----CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeeeecc-------------------cc---CC
Confidence 010 0124667889997 4666666 689999999987654333211 00 01
Q ss_pred EEEEcCCCCEEEEEeCCC
Q 004685 284 HVTFSPNGEEVLLSYSGE 301 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg 301 (737)
.+.|+|+|.+++.++..+
T Consensus 178 ~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 178 ETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp TTBCCCBCCCCCCCCTTT
T ss_pred CceeCCCccEEeeeccCC
Confidence 126899998877666543
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=4.2e-19 Score=181.50 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=124.4
Q ss_pred EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC-CCCCCCCCCCCCCceeecc
Q 004685 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC 145 (737)
Q Consensus 67 sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~ 145 (737)
.++.|+.|++||+.+++.... ..|...|.+++|+|+ +.+|++++ ++.|++||+.. ... ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV--WQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE--EEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred CCCcceeEEEEeCCCCceeee--ccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence 456789999999999887644 358899999999999 78888887 78999999986 332 223333
Q ss_pred C-CCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004685 146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (737)
Q Consensus 146 h-~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (737)
+ ...+.+++|+| ++++|++++ .++.+.+|.+...... ...+. ....+..++
T Consensus 82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~----~~~~~~~~~ 135 (297)
T 2ojh_A 82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT---------------------PRLMT----KNLPSYWHG 135 (297)
T ss_dssp TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC---------------------CEECC----SSSSEEEEE
T ss_pred cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc---------------------eEEee----cCCCccceE
Confidence 4 46788999999 557787877 3455666655432110 00111 112378889
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-C
Q 004685 223 ISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-G 300 (737)
Q Consensus 223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-d 300 (737)
|+|++..++++++.++.+++|+++... ....+ ..+. ..+.+++|+|+|++|+.++. +
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------------THGE-GRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--------------------CCSS-SCEEEEEECTTSSEEEEEECTT
T ss_pred ECCCCCEEEEEECCCCceEEEEEECCCCcceEc--------------------ccCC-CccccceECCCCCEEEEEecCC
Confidence 999854344478889999999865321 11111 1111 25899999999998887774 8
Q ss_pred CeEEEEEcCC
Q 004685 301 EHVYLMDVNH 310 (737)
Q Consensus 301 g~v~iwd~~~ 310 (737)
+.+.+|++..
T Consensus 195 ~~~~i~~~~~ 204 (297)
T 2ojh_A 195 GQMQIWRVRV 204 (297)
T ss_dssp SSCEEEEEET
T ss_pred CCccEEEECC
Confidence 8999998763
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=4.2e-19 Score=206.01 Aligned_cols=201 Identities=12% Similarity=-0.010 Sum_probs=137.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC----
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR---- 126 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~---- 126 (737)
..|.+++|+|| ..++.+. ++.|++||+.+++..... .+...+.+++|+|+ |+.|+++ .|+.|++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 6555553 599999999988765443 46778999999999 7888885 689999999986
Q ss_pred -CCCCCCCCCCCCCceeeccCC--------------CceeEEEEecCCCcEEEEEeC-----------------------
Q 004685 127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSASE----------------------- 168 (737)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~~p~~~~~l~s~s~----------------------- 168 (737)
+... .....+. ..+.++.|+| ++++|++++.
T Consensus 155 ~g~~~----------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 155 MSRAI----------AVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCCE----------ESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred CCCcE----------EeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 3321 1111122 2358899999 5577777762
Q ss_pred ----------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685 169 ----------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 169 ----------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+..|.+||+.+++ ...+.....+...+.+++|+|+ ++.|++++.++
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~ 279 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR 279 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence 3456666665443 2223322345567899999997 57888877665
Q ss_pred -----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEEeCCCeEEEEEcC
Q 004685 239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~ 309 (737)
.|++||+.+++....+... ........+..++|+| +|++++++..|+.+++|.+.
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTLFVE----------------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEE----------------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCCeeEEEEEECCCCceeeEEEEc----------------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 8999999887322221100 0000000246689999 99999999889999999876
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=2.3e-19 Score=208.89 Aligned_cols=224 Identities=8% Similarity=-0.005 Sum_probs=144.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc---ceEEEEEeeCCCCCEEEEEECC---------CcE
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV 119 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~~l~sgs~d---------g~I 119 (737)
.+.+++|+|||+++++ +.||+|++||+.+++....+ ..|.. .|.+++|+|+ |++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence 4678899999998877 78999999999999877766 55654 4999999999 7999998874 778
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~ 199 (737)
.+||+..+... .+.....|...+..++|+| +++.|+.++. +.|++||+.+++........... .++..
T Consensus 94 ~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g 161 (723)
T 1xfd_A 94 VLSKIPHGDPQ--------SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG 161 (723)
T ss_dssp EEEESSSCCCE--------ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred EEEECCCCceE--------eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence 89999864321 1223334556688999999 5577777765 79999999876532000000000 00000
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC----------------------------------cEEEEEC
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR 245 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg----------------------------------~i~iwd~ 245 (737)
.. ..+.. ......+.+++|+|+ ++.|++++.|+ .|++||+
T Consensus 162 ~~----~~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 162 LS----DWLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp EC----CHHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred cc----ceeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 00 00000 000123478999998 57888876543 6888888
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCC
Q 004685 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG 312 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----dg~v~iwd~~~~~ 312 (737)
.+++....+... ... . .....+..++|+|||++|++... +..|++||+.+++
T Consensus 236 ~~~~~~~~l~~~------------~~~--~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 236 NGPTHDLEMMPP------------DDP--R-MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp SSSCCCEECCCC------------CCG--G-GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CCCceeEEeeCC------------ccC--C-CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 766532222100 000 0 01225899999999998877654 3578999987753
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=7.8e-19 Score=179.48 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=177.7
Q ss_pred ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEcccC-ccce
Q 004685 19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANV 96 (737)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~h-~~~V 96 (737)
....+.+.+++|.+|+... .+. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...+
T Consensus 13 ~~~~~~~~~~~i~~~d~~~--~~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~ 87 (297)
T 2ojh_A 13 STGPGGSMRSSIEIFNIRT--RKM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICN 87 (297)
T ss_dssp -----CCCCEEEEEEETTT--TEE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBC
T ss_pred eecCCCCcceeEEEEeCCC--Cce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccc
Confidence 3445567889999999443 333 35566899999999999999999987 78999999998 7766555 444 4788
Q ss_pred EEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685 97 FCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v 174 (737)
.+++|+|+ +.+|++++ .++.+.||.+...... ...+..+ ..+..++|+|++..++++++.++.+.+
T Consensus 88 ~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 88 NDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGT---------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp SCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCC---------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred cceEECCC--CCEEEEEEeCCCCcceEEEEECCCCc---------eEEeecC-CCccceEECCCCCEEEEEECCCCceEE
Confidence 99999999 79999998 4456666666432221 2333333 348899999965445558889999999
Q ss_pred EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCcc
Q 004685 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLT 252 (737)
Q Consensus 175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~-~~~~~~ 252 (737)
|++...... ......+...+.+++|+|++ +.|++++ .++.+++|++. ....+.
T Consensus 156 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 156 YSMDIDSGV------------------------ETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp EEEETTTCC------------------------EEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred EEEECCCCc------------------------ceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcE
Confidence 997543210 11112344678999999984 6666554 68999999986 222222
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCCCcceeee--e
Q 004685 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--T 319 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-----------g~v~iwd~~~~~~~~~~~--~ 319 (737)
.+ ..+. ..+..++|+|+|++|++++.+ +.|++||+.+++...... .
T Consensus 211 ~~--------------------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 269 (297)
T 2ojh_A 211 RI--------------------TDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG 269 (297)
T ss_dssp EC--------------------CCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred EE--------------------ecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence 11 1111 258899999999999988875 569999999876543333 5
Q ss_pred cCCCCeeeeeccCCCCccC
Q 004685 320 VGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~ 338 (737)
+...+..++|+|+.+.+..
T Consensus 270 ~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 270 GQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp STTTSCSCCBCTTSSEEEE
T ss_pred CCcccccceECCCCCEEEE
Confidence 5667888899998765544
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=9.1e-18 Score=176.81 Aligned_cols=206 Identities=9% Similarity=0.054 Sum_probs=146.2
Q ss_pred cCCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEE
Q 004685 49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR 120 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~ 120 (737)
....+..++|+|++++|++++. ++.|.+||..+++.+..+. ....+.+++|+|+ +. +++++..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence 3457889999999998887774 5689999999999888873 3345788999999 56 455566689999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCC---------ceeEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCCCCC
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH 190 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l~s~-s~Dg~I~vwdl~~~~~~~~~~~~~ 190 (737)
+||...... ...+..+.. .+.+++|+|++..+++++ +.++.|.+||+.+++..
T Consensus 115 ~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~------- 177 (353)
T 3vgz_A 115 AIDAKTGEV----------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK------- 177 (353)
T ss_dssp EEETTTCCE----------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred EEeCCCCee----------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence 999986432 233332221 268899999554444444 35789999999876522
Q ss_pred CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004685 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (737)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (737)
. ..+.+...+.+++|+|+ ++.+++++.++.|.+||+.+++.+..+....
T Consensus 178 -------~-----------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~------------ 226 (353)
T 3vgz_A 178 -------T-----------AIQNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLLD------------ 226 (353)
T ss_dssp -------E-----------EECCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECCC------------
T ss_pred -------E-----------EecCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCC------------
Confidence 0 01111234677899997 5788888889999999999876554432110
Q ss_pred cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (737)
Q Consensus 271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~ 311 (737)
.++. ..+..++|+|+|+++++++. ++.|.+||+.++
T Consensus 227 ----~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 227 ----DGKE-HFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp ----SSSC-CCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ----CCCC-cccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 1111 14788999999998888776 589999998774
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=5.7e-19 Score=206.11 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=137.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
.|.+++|||||++|++++. +.|++||+.++. ....+ ..|...+.+++|+|+ |++|+.++ ++.|++||+.....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE
Confidence 3889999999999999987 899999999872 33445 567888999999999 79998887 56899999986322
Q ss_pred CCCCCCCCCCceeeccCCC----------------ceeEEEEecCCCcEEEEEeCCC-----------------------
Q 004685 130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG----------------------- 170 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~----------------~v~~l~~~p~~~~~l~s~s~Dg----------------------- 170 (737)
......+.. .+.+++|+| +++.|++++.|+
T Consensus 185 ----------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 185 ----------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp ----------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred ----------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 111111221 247899999 556666766554
Q ss_pred ----------cEEEEEcCC-CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---
Q 004685 171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--- 236 (737)
Q Consensus 171 ----------~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~--- 236 (737)
.|.+||+.+ ++ ...+.....+...+..++| |+ ++.|++++.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~ 308 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQ-----------------------TQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD 308 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCC-----------------------CEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred CCCCCCCCeeEEEEEECCCCCc-----------------------eEEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence 455555554 33 2222222245678899999 97 567776543
Q ss_pred --CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc---ceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 237 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
+..|++||+.+++....+.. +... .+..++|+|||+++++++.||.+.+|.+..
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLAHE--------------------TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEEEE--------------------ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred CCeEEEEEEECCCCceEEEEEc--------------------CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 57899999988764322211 1000 245789999999888888899888887653
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=8.6e-18 Score=176.05 Aligned_cols=241 Identities=7% Similarity=0.072 Sum_probs=153.0
Q ss_pred CCCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCe--EEEEEcccCccce
Q 004685 23 RPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANV 96 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d-g~V~vwd~~--~~~--~~~~~~~~h~~~V 96 (737)
....++.|.+|+... ...+....+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+ ..+ ..+
T Consensus 10 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~ 86 (343)
T 1ri6_A 10 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALP-GSL 86 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECS-SCC
T ss_pred eCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccC-CCC
Confidence 335678899998532 222333333 477889999999999988888876 999999997 554 33444 333 388
Q ss_pred EEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEE
Q 004685 97 FCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQ 174 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~v 174 (737)
.+++|+|+ +.+|++++. ++.|.+||+..... ......+. ....+.+++|+|++ +++++++ .++.|.+
T Consensus 87 ~~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 87 THISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVE-GLDGCHSANISPDN-RTLWVPALKQDRICL 155 (343)
T ss_dssp SEEEECTT--SSEEEEEETTTTEEEEEEEETTEE-------EEEEEEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEE
T ss_pred cEEEEcCC--CCEEEEEecCCCeEEEEECCCCcc-------cccccccc-CCCCceEEEECCCC-CEEEEecCCCCEEEE
Confidence 99999999 677766654 88999999952110 01133333 33458899999954 5555555 8999999
Q ss_pred EEcCC-CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--CCCc
Q 004685 175 HDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPL 251 (737)
Q Consensus 175 wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~~~~ 251 (737)
||+.. ++.. .+.. ..... .....+..++|+|++..+++++..++.|++||+.. +...
T Consensus 156 ~d~~~~~~~~------------~~~~------~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 156 FTVSDDGHLV------------AQDP------AEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEECTTSCEE------------EEEE------EEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEecCCCcee------------eecc------ccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 99986 3210 0000 00000 11235778999998533445555899999999964 2210
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~ 310 (737)
.. .... .+.........+..++|+|+|++|+++. .++.|.+||+..
T Consensus 216 -~~----------~~~~--~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 216 -CV----------QTLD--MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp -EE----------EEEE--CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred -EE----------eecc--ccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 00 0000 0000000011477899999999888665 689999999874
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=3.3e-17 Score=172.45 Aligned_cols=197 Identities=12% Similarity=0.148 Sum_probs=120.7
Q ss_pred CCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccC
Q 004685 71 DTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (737)
Q Consensus 71 dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h 146 (737)
++.|.+|+++ +++........+...+..++|+|+ +.+++++.. ++.|.+|++..... ..+..+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~~ 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DCLYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVAP 84 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CEEEEEEEETTEEEEEEEEEETTEE--------EEEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--CeEEEEEecCCCceEEEEEecCCcE--------EEeeeeecC
Confidence 4567777654 555433211345577888999999 564444432 68999999964321 123444556
Q ss_pred CCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685 147 TRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (737)
Q Consensus 147 ~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 225 (737)
...+..++|+| ++++|++++ .++.|.+|++...... ..+........... .......+.+++|+|
T Consensus 85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLTP 150 (347)
T ss_dssp SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEECT
T ss_pred CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEECC
Confidence 77889999999 456666666 7899999999643211 11111100000000 111234578899999
Q ss_pred CCCcEEEEEeCCCcEEEEECC-CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeE
Q 004685 226 TRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHV 303 (737)
Q Consensus 226 ~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v 303 (737)
++ +++++...++.|++||+. .+. +.... . . ....+..+..++|+|+|++|++++ .++.|
T Consensus 151 dg-~l~v~~~~~~~v~~~~~~~~g~-~~~~~----------~-----~--~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 151 DN-RLAVIDLGSDKVYVYNVSDAGQ-LSEQS----------V-----L--TMEAGFGPRHLVFSPDGQYAFLAGELSSQI 211 (347)
T ss_dssp TS-CEEEEETTTTEEEEEEECTTSC-EEEEE----------E-----E--ECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CC-cEEEEeCCCCEEEEEEECCCCc-EEEee----------e-----E--EcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence 85 577777778999999998 332 11100 0 0 001111367899999999777754 58899
Q ss_pred EEEEcCC
Q 004685 304 YLMDVNH 310 (737)
Q Consensus 304 ~iwd~~~ 310 (737)
.+|++..
T Consensus 212 ~v~~~~~ 218 (347)
T 3hfq_A 212 ASLKYDT 218 (347)
T ss_dssp EEEEEET
T ss_pred EEEEecC
Confidence 9999875
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=4.5e-18 Score=197.36 Aligned_cols=219 Identities=11% Similarity=0.018 Sum_probs=131.7
Q ss_pred cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEEcccCc-----------------cceEEE
Q 004685 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFCT 99 (737)
Q Consensus 38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~h~-----------------~~V~~v 99 (737)
...+....|..+ .+..+.|. |+.+++++.|+ | +||+.+++.+ ..+ ..+. ..|.++
T Consensus 15 ~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~ 87 (706)
T 2z3z_A 15 PGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRT 87 (706)
T ss_dssp ---------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEE
T ss_pred CCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeE
Confidence 334444455544 35567888 66777787787 8 9999998873 333 2332 469999
Q ss_pred EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (737)
Q Consensus 100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~ 179 (737)
+|+|+ +.++++ .++.|++||+.... ...+..+...+.+++|+| +++.|+++ .|+.|.+||+.+
T Consensus 88 ~~spd--~~~~~~--~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 88 LDAGR--GLVVLF--TQGGLVGFDMLARK-----------VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp EETTT--TEEEEE--ETTEEEEEETTTTE-----------EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBC
T ss_pred EECCC--CeEEEE--ECCEEEEEECCCCc-----------eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCc
Confidence 99998 444444 35999999997532 334445667788999999 55777664 679999999987
Q ss_pred -----CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-------------------
Q 004685 180 -----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG------------------- 235 (737)
Q Consensus 180 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s------------------- 235 (737)
++.......... .+..... ....+...+.+++|+|+ ++.|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~ 218 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEA 218 (706)
T ss_dssp TTSCCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred ccccCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCC
Confidence 543211110000 0000000 00011233578999998 57888887
Q ss_pred --------------CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004685 236 --------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (737)
Q Consensus 236 --------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg 301 (737)
.+..|++||+.+++...... ...+. ..+.+++|+|||++|++++.++
T Consensus 219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------------------~~~~~-~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------------------GEPKE-KFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------------------CSCTT-CEEEEEEECTTSSEEEEEEECT
T ss_pred ceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------------------CCCCc-eeEeeEEEECCCCEEEEEEeCC
Confidence 45789999998765321110 01122 2489999999999999988775
Q ss_pred -----eEEEEEcCCC
Q 004685 302 -----HVYLMDVNHA 311 (737)
Q Consensus 302 -----~v~iwd~~~~ 311 (737)
.|++||+.++
T Consensus 280 ~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 280 AQNECKVNAYDAETG 294 (706)
T ss_dssp TSCEEEEEEEETTTC
T ss_pred CCCeeEEEEEECCCC
Confidence 8999998875
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=3.9e-17 Score=170.47 Aligned_cols=230 Identities=9% Similarity=0.050 Sum_probs=161.1
Q ss_pred CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeE-EEEEcccCccceEEEE
Q 004685 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTK 100 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~-~~~~~~~h~~~V~~v~ 100 (737)
....++.|.+|+ ..+.+....+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..+..+++
T Consensus 15 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 90 (331)
T 3u4y_A 15 VEQHLRRISFFS--TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVD 90 (331)
T ss_dssp EEGGGTEEEEEE--TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEE
T ss_pred EecCCCeEEEEe--CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceE
Confidence 345577899998 44556666666666777 9999999996666554 89999999999887 6666 55666666699
Q ss_pred EeeCCCCCEEEEEECCC---cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEE
Q 004685 101 FVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHD 176 (737)
Q Consensus 101 ~sp~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwd 176 (737)
|+|+ +.+++++..++ .|.+||+..... +..+. ......+++|+|++..++++...++. |.+|+
T Consensus 91 ~s~d--g~~l~~~~~~~~~~~i~v~d~~~~~~----------~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 91 ITPD--DQFAVTVTGLNHPFNMQSYSFLKNKF----------ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp ECTT--SSEEEECCCSSSSCEEEEEETTTTEE----------EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred ECCC--CCEEEEecCCCCcccEEEEECCCCCe----------EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 9999 78888555553 899999985321 33333 34456899999966556666677788 99999
Q ss_pred cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC---ccc
Q 004685 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP---LTS 253 (737)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~---~~~ 253 (737)
+...... .+.. ...+ ........++|+|++..+++++..++.|++||+.+++. +..
T Consensus 158 ~~~~g~~--------------~~~~---~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 158 IDADGVL--------------FDTG---QEFI----SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp ECTTCCE--------------EEEE---EEEE----CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred ECCCCcE--------------eecC---Cccc----cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9864311 0000 0001 11234689999998533556666789999999988765 332
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~ 312 (737)
+.. . ..+..++|+|+|++|+++.. ++.|.+||+.+++
T Consensus 217 ~~~--------------------~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 217 VGT--------------------N--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEC--------------------S--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred ccC--------------------C--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 210 1 13678999999998877765 7889999998753
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=1.1e-17 Score=189.45 Aligned_cols=197 Identities=9% Similarity=0.018 Sum_probs=136.3
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecC
Q 004685 50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLS 125 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~ 125 (737)
..+|.+++|+|||++||.++. ||+++||++.+++.. .+...+...+..++|+|+ .++++++. +....||.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEEe
Confidence 458999999999999998887 999999999776654 442333368999999987 57777775 5566777665
Q ss_pred C--CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 126 R--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 126 ~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
. ... ...+.. ...+...+|+|++..++++.+.++.+.+||+.+++.. .
T Consensus 97 ~~~~g~----------~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~------- 146 (582)
T 3o4h_A 97 TSRPGE----------EQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------E------- 146 (582)
T ss_dssp TTSTTC----------CEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------E-------
T ss_pred ccCCCc----------cccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------E-------
Confidence 3 111 112221 2234466888865555555555556669999876521 1
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+... .. .+++|+|+ +++|+.++.+ +.|++||+.+++... + .++..
T Consensus 147 ----l~~~---~~--~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~~-l--------------------~~~~~ 195 (582)
T 3o4h_A 147 ----LARL---PG--FGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F--------------------DSGEG 195 (582)
T ss_dssp ----EEEE---SS--CEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCEE-E--------------------CCSSC
T ss_pred ----eecC---CC--ceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCceE-e--------------------ecCCC
Confidence 1111 11 68899997 6889887777 789999998765321 1 11222
Q ss_pred cceeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCC
Q 004685 280 LHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAG 312 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg--~v~iwd~~~~~ 312 (737)
.+..++|||||++|+++..++ .|++||+.+++
T Consensus 196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 488999999999999888888 89999988754
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=6e-18 Score=196.85 Aligned_cols=239 Identities=8% Similarity=0.019 Sum_probs=149.5
Q ss_pred CcccccccccccccccccceeecccCC---ceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEc--c
Q 004685 25 DVNHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIE--T 90 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~s~~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~--~ 90 (737)
+.++++.+|+ ..+.+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++. ..+. .
T Consensus 34 ~~dg~i~~~d--~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~ 110 (723)
T 1xfd_A 34 EQKGTVRLWN--VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE 110 (723)
T ss_dssp CSSSCEEEBC--GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT
T ss_pred eCCCCEEEEE--CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc
Confidence 3567899999 445556667777765 49999999999999999764 7888999998875 2331 2
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC------------------ceeE
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKK 152 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~ 152 (737)
.|...+.+++|+|+ |+.|+.++. +.|++||+..+.. ......+.. .+.+
T Consensus 111 ~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~----------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 111 VSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQA----------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp CCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCC----------EEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred cccccccccEECCC--CCEEEEEEC-CeEEEEECCCCce----------EEEecCCCCCceECcccceeEEEEeccCcce
Confidence 34456899999999 789998886 7999999986432 222222222 2378
Q ss_pred EEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCC----------CCCCCCCccceEEEeccCCce-eeccCC---CCCccc
Q 004685 153 LAVEVGNPHVVWSASED-GTLRQHDFRQGSSCP----------PAGSSHQECRNILLDLRCGAK-RSLADP---PKQTLS 217 (737)
Q Consensus 153 l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~ 217 (737)
++|+| +++.|++++.| +.+.+|++....... ..+.........+++...+.. ..+... ..+...
T Consensus 178 ~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred EEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 99999 55666666544 456666654221100 000001122344555554442 222211 112567
Q ss_pred eEEEEEecCCCcEEEEEeC----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce----eEEEEcC
Q 004685 218 LKSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSP 289 (737)
Q Consensus 218 v~~i~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~v~~sp 289 (737)
+..++|+|+ ++++++.+. +..|++||+.+++....+.. +....+ ..++|+|
T Consensus 257 ~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 257 ITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------------------ESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp EEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------------------ECSSCCCCCCCCCEECT
T ss_pred eEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------------------ccCCEEeccCCCceEcC
Confidence 889999997 577766643 36799999987753322110 000112 3679999
Q ss_pred CCCEEEEE--eCCC
Q 004685 290 NGEEVLLS--YSGE 301 (737)
Q Consensus 290 ~g~~l~~g--~~dg 301 (737)
||+.|+.. ..++
T Consensus 316 dg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 316 DGRKFFFIRAIPQG 329 (723)
T ss_dssp TSCSEEEEEEECCS
T ss_pred CCCeEEEEEecccC
Confidence 99987764 4466
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=1.6e-17 Score=174.51 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=110.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCC
Q 004685 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~ 133 (737)
++++++++.++++++.++.|.+||..+++.+..+.......+..++|+|+ +.++ +++..++.|.+||+.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~~---- 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN---- 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE----
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCcE----
Confidence 45688889999999999999999999999888773222236789999999 5654 5666789999999975321
Q ss_pred CCCCCCceeecc-C-----CCceeEEEEecCCCcEEEEEeCC------------CcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 134 DNAITPSALYQC-H-----TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 134 ~~~~~~~~~~~~-h-----~~~v~~l~~~p~~~~~l~s~s~D------------g~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
...+.. + ...+..++|+| +++++++++.+ +.|.+||+.+++..... .
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~ 142 (349)
T 1jmx_B 78 ------TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------R 142 (349)
T ss_dssp ------EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------E
T ss_pred ------EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--------e
Confidence 222221 1 22378899999 55677777754 89999999875422000 0
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
. . .+...+.+++|+|++ + +++++ +.|++||+.+++.+..+
T Consensus 143 ~-----------~----~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 143 T-----------F----PMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp E-----------E----ECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEE
T ss_pred e-----------c----cCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccc
Confidence 0 0 012257788999984 5 55554 34999999887654433
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=6.5e-16 Score=163.47 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=127.4
Q ss_pred CCCEEEEEe----CCCcEEEEEC--CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC----CcEEEEecCCCCCC
Q 004685 61 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR 130 (737)
Q Consensus 61 ~g~~lasgs----~dg~V~vwd~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iwd~~~~~~~ 130 (737)
...+++.|+ .++.|.+|++ .+++....... +...+..++|+|+ +.+|++++.+ +.|.+|++....+.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 334555663 4568999876 45554433312 6677888999999 7888888876 89999998753221
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
. ..+.....+......+++ ++..++++...++.|.+|++.....+.... ..+ ... +. ....
T Consensus 89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------~~~-~~~-g~--~~~~ 149 (361)
T 3scy_A 89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS-------DVI-EFK-GS--GPDK 149 (361)
T ss_dssp E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS-------EEE-ECC-CC--CSCT
T ss_pred E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc-------eeE-Ecc-CC--CCCc
Confidence 1 123334445566777887 343444444568899999997654321110 000 000 00 0000
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC------cccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
...+...+.+++|+|++..+++++..++.|++|++..... +.... ....... .....+..
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~------------~~~~~~~--~~~~~~~~ 215 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG------------TPEAFKV--APGSGPRH 215 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE------------EEEEEEC--CTTCCEEE
T ss_pred cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc------------cccceec--CCCCCCeE
Confidence 1122345688999998533445555689999999875431 10000 0000000 11123778
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 004685 285 VTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (737)
Q Consensus 285 v~~sp~g~~l~~g~-~dg~v~iwd~~~~ 311 (737)
++|+|+|+++++++ .++.|.+|++.++
T Consensus 216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 216 LIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred EEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 99999999988888 5899999998863
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=189.22 Aligned_cols=222 Identities=10% Similarity=0.042 Sum_probs=135.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc---ceEEEEEeeCCCCCEEEEEEC---------CCcEEEE
Q 004685 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF 122 (737)
Q Consensus 55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~~l~sgs~---------dg~I~iw 122 (737)
+++|+|+|++++++ .|+.|++||+.+++....+ ..|.. .+.+++|+|+ |++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence 68999999655554 6999999999999877666 44443 4899999999 799988876 7899999
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
|+..+.... ...+ ...+..++|+| +++.|+.+. ++.|++||+.+++.......++. ..++.
T Consensus 96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~--~~v~~---- 156 (719)
T 1z68_A 96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE--NKIFN---- 156 (719)
T ss_dssp ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT--TTEEE----
T ss_pred ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc--CCeEc----
Confidence 998643200 0111 24588899999 556676665 78999999987763211100000 00000
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC----------------------------------cEEEEECCCC
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML 248 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg----------------------------------~i~iwd~~~~ 248 (737)
+....+.. ........+++|+|+ ++.|+.++.|. .|++||+.++
T Consensus 157 g~~~~v~~-ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~ 234 (719)
T 1z68_A 157 GIPDWVYE-EEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP 234 (719)
T ss_dssp SSCCHHHH-HHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred ccccceee-eecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence 00000000 000012258999998 57888877552 7888888765
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC----CeEEEEE----cCCCCcc
Q 004685 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHAGGR 314 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d----g~v~iwd----~~~~~~~ 314 (737)
+....+. ...+..+ .++.. .+..++|+||++++++.... ..|.+|| +.+++..
T Consensus 235 ~~~~~~~----------~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 235 AYVGPQE----------VPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp HHHCCEE----------CCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CccceeE----------ccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 4210000 0000001 11222 58999999998877775432 2588899 7665433
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=1.6e-17 Score=180.08 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=152.9
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------eEEEEE----cccCccceEEEEEeeCCCCCEEE---
Q 004685 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV--- 111 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----------~~~~~~----~~~h~~~V~~v~~sp~~~~~~l~--- 111 (737)
+...++.|++++++.++++|+.|+ |+||+.... ..+..+ ...+...|.+++|+|+ +.+|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~ 111 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM 111 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence 345689999999999999999987 899875311 011111 0235678999999999 78888
Q ss_pred -EEECCCcEEEEecCCCCCCC-CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685 112 -SGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (737)
Q Consensus 112 -sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~ 189 (737)
+|+.|+.|+|||+....... ...........+.+|...|.+++|+|.++.+|++++.||+|++||++++...
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------ 185 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------ 185 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence 78889999999987531000 0000011235566799999999999976789999999999999999876311
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (737)
.....|...+.+++|+|+ +++|++|+.||.|++||++ ++....+...
T Consensus 186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~------------ 232 (434)
T 2oit_A 186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCP------------ 232 (434)
T ss_dssp -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCC------------
T ss_pred -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCC------------
Confidence 011135678999999997 6899999999999999998 4333222110
Q ss_pred ccccCCCCcccceeEEEEcCCCCEEEEEe-CCC------eEEEEEcCCC
Q 004685 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA 311 (737)
Q Consensus 270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg------~v~iwd~~~~ 311 (737)
......+...|.+++|++++.++++.+ .+| .+++|++.+.
T Consensus 233 --~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 --PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 000111122599999999988776544 343 3899999874
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1.8e-16 Score=169.45 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=140.1
Q ss_pred ccccceeecccCCceEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE
Q 004685 39 RLSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV 110 (737)
Q Consensus 39 ~~~~~~~l~~H~~~V~~-----l~~s~~g~~lasgs~-dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l 110 (737)
+......+..|...... .+|+|||++|+.++. ++ .|.+||+.+++..... ..+...+..++|+|+ +..|
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l 95 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDAL 95 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEE
Confidence 34556677777766665 789999999998887 66 4888899988876655 566666667889999 7999
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE--EecCCCcEEEEE----------------------
Q 004685 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA---------------------- 166 (737)
Q Consensus 111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~---------------------- 166 (737)
+.++.++.|++||+..... ......+...+.... ++| ++.+++..
T Consensus 96 ~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp EEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred EEEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhcc
Confidence 9999999999999986432 223333444444343 367 44666532
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec-CCCcEEEEEeCC------Cc
Q 004685 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AF 239 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t~s~D------g~ 239 (737)
..+..|.+||+.+++. ..+. .+...+..++|+| + ++.|+.+..+ ..
T Consensus 165 ~~~~~l~~~d~~~g~~-----------------------~~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGES-----------------------TVIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp CCCEEEEEEETTTCCE-----------------------EEEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSCS
T ss_pred CCcceEEEEECCCCce-----------------------EEee---cCCccccccEECCCC-CCEEEEEEecCCCCCcce
Confidence 2345678888776641 1111 1234578899999 7 5777766653 37
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC----eEEEEEcCCCC
Q 004685 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHAG 312 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg----~v~iwd~~~~~ 312 (737)
|.++|+......... .......+..++|+|||+.|+..+. ++ .|++||+.+++
T Consensus 218 l~~~d~~~~~~~~l~--------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 218 MWLINEDGTNMRKVK--------------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EEEEETTSCCCEESC--------------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEEEeCCCCceEEee--------------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 888887654321110 0111124778899999998765544 22 39999988754
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=7.5e-16 Score=162.01 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=148.9
Q ss_pred ccccccccccccccccce-eecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--EEEEEcccCccceEEEE
Q 004685 27 NHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTK 100 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~ 100 (737)
.+.+.+|.....+.+... ....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+ ..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEE
Confidence 456677775444443322 3334567788999999999 554443 6899999998765 33343 45677889999
Q ss_pred EeeCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc---------CCCceeEEEEecCCCcEEEEEeCCC
Q 004685 101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 101 ~sp~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
|+|+ +++|++++ .++.|.+|++... +.. ..+..+.. +...+.+++|+|++ +++++...++
T Consensus 93 ~spd--g~~l~~~~~~~~~v~v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~ 162 (347)
T 3hfq_A 93 VDEA--RQLVYSANYHKGTAEVMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD 162 (347)
T ss_dssp EETT--TTEEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred ECCC--CCEEEEEeCCCCEEEEEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence 9999 78888777 6899999999631 110 11222211 22358899999955 5777777789
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--C
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--L 248 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~ 248 (737)
.|.+|++...... ..+.. +.. .....+..++|+|++..+++++..++.|++|++.. +
T Consensus 163 ~v~~~~~~~~g~~-----------~~~~~--------~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 163 KVYVYNVSDAGQL-----------SEQSV--------LTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp EEEEEEECTTSCE-----------EEEEE--------EEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEEEEEECCCCcE-----------EEeee--------EEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 9999999832211 00000 000 11224678999998533555567789999999874 2
Q ss_pred CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004685 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (737)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~ 310 (737)
+.. ... .... ..........+..++|+|+|++|+++ ..++.|.+|++..
T Consensus 222 ~~~-~~~----------~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 222 AFT-QLG----------IVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEE-EEE----------EEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred ceE-Eee----------eeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 210 000 0000 00000011248889999999988555 5589999999864
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=8.1e-17 Score=182.27 Aligned_cols=77 Identities=6% Similarity=-0.047 Sum_probs=66.3
Q ss_pred eecccccceeeeecccCCCCEEEEecCCC--cEEEEEcCcccEEEEeecCCCceEEEE--------ecCCCCeEEEEecC
Q 004685 621 GHCNVGTDIKQASFLGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGID 690 (737)
Q Consensus 621 gh~~~~~~i~~~~~~s~d~~~l~sgs~D~--~i~iWd~~t~~~~~~l~gH~~~V~~v~--------~sp~~~~l~S~~~D 690 (737)
+|.+.+..+. |||||++|++++.|+ .|++||++++++. .+.+|...|.+++ |||||.++++++.|
T Consensus 192 ~~~~~~~~~~----~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 192 SGEGSFSSAS----ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp CSSCEEEEEE----ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred cCCCccccce----ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence 3333444455 899999999999999 9999999999998 8899999898888 99999999999999
Q ss_pred CcEEEEcCCCCCCc
Q 004685 691 NTIKIWTPSASVPS 704 (737)
Q Consensus 691 g~i~lW~~~~~~~~ 704 (737)
|+++||++ ++..
T Consensus 267 g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 267 GRSAVFID--GERV 278 (582)
T ss_dssp TEEEEEET--TEEE
T ss_pred CcEEEEEE--CCee
Confidence 99999999 5444
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=1e-14 Score=154.24 Aligned_cols=245 Identities=7% Similarity=0.005 Sum_probs=146.6
Q ss_pred ccccccccccccccc--ccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEEcccCccc
Q 004685 26 VNHSLQMHSSLVRRL--SQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSAN 95 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~--~~~--~~~~~~~h~~~ 95 (737)
.++.+.+|.....+. +....+ |...+..++|+|+|++|++++.+ +.|.+|++.. ++. +..+ ..+...
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~ 101 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGAD 101 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSC
T ss_pred CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCC
Confidence 356677776544333 333344 77788899999999999998876 7999998865 432 3333 335556
Q ss_pred eEEEEEeeCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCcee--------eccCCCceeEEEEecCCCcEEEEE
Q 004685 96 VFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSAL--------YQCHTRRVKKLAVEVGNPHVVWSA 166 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~l~s~ 166 (737)
...+++ + +.+|++++ .++.|.+|++........ ...... ...+...+.+++|+|++..+++++
T Consensus 102 p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 102 PCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred cEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 777777 5 56666665 588999999975221110 000000 011233468899999553455555
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEEC
Q 004685 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDR 245 (737)
Q Consensus 167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~ 245 (737)
..++.|.+|++......... ...... +...... .........++|+|+ ++++++++ .++.|.+||+
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~-----~~l~~~-----~~~~~~~--~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNK-----EKFLTK-----GTPEAFK--VAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTC-----CCCEEE-----EEEEEEE--CCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcccc-----cceeec-----cccccee--cCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEe
Confidence 56899999998764310000 000000 0000000 011235678999998 46666655 6899999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC--CeEEEEEcCC
Q 004685 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH 310 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--g~v~iwd~~~ 310 (737)
.++...... .. .. ..........++|+|||++|+++..+ +.|.+|++..
T Consensus 241 ~~g~~~~~~-----------~~---~~--~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 241 ADGMLDEIQ-----------TV---AA--DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp ETTEEEEEE-----------EE---ES--CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred cCCceEEeE-----------EE---ec--CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 855321100 00 00 00111136789999999999777765 8999999863
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=7e-16 Score=160.97 Aligned_cols=248 Identities=11% Similarity=0.120 Sum_probs=168.3
Q ss_pred Ccccccccccccccccccceeecc-cCC-ceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC----ccceE
Q 004685 25 DVNHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVF 97 (737)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~-H~~-~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h----~~~V~ 97 (737)
..+++|.+|+. .+.+....+.. +.. .+.+++|+|+++++ +++..++.|.+||+.+++.+..+...+ ...+.
T Consensus 8 ~~~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 8 ARPDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp ETTTEEEEEET--TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CCCCeEEEEEC--CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 45678888883 44556666653 222 47899999999765 566678899999999998887763222 23678
Q ss_pred EEEEeeCCCCCEEEEEE------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685 98 CTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 165 (737)
+++|+|+ +++|+++. .++.|.+||+.... ....+. ....+.+++|+|+ +++|++
T Consensus 86 ~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~d-g~~l~~ 151 (337)
T 1pby_B 86 GAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARD-GSKLYG 151 (337)
T ss_dssp CEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTT-SSCEEE
T ss_pred ceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCC-CCEEEE
Confidence 9999999 68888776 57999999997532 133333 2456788999995 465555
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCC--------CCcc----------------------------------ceEEEeccCC
Q 004685 166 ASEDGTLRQHDFRQGSSCPPAGSS--------HQEC----------------------------------RNILLDLRCG 203 (737)
Q Consensus 166 ~s~Dg~I~vwdl~~~~~~~~~~~~--------~~~~----------------------------------~~~~~~~~~~ 203 (737)
+ ++.|.+||+.+++........ ..+. ...+++...+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 5 689999999876543110000 0000 1234555544
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
... ......+...+.+++|+|+ +++++++ ++.|++||+.+++.+..+.. . ..+.
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~--------------------~--~~~~ 283 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPL--------------------P--HSYY 283 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEEC--------------------S--SCCC
T ss_pred Cce-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceecC--------------------C--Ccee
Confidence 433 1112223346778999997 5777777 79999999987765433311 1 1377
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee
Q 004685 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~ 316 (737)
+++|+|+|++|++++.++.|.+||+.+++....
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence 899999999999998899999999998765433
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=2.3e-15 Score=158.34 Aligned_cols=249 Identities=9% Similarity=0.048 Sum_probs=174.3
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCcc---------ce
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA---------NV 96 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~---------~V 96 (737)
++.|.+|+ ..+.+....+... ..+.+++|+|+|+++ +++..++.|.+||..+++.+..+ ..+.. .+
T Consensus 68 ~~~v~~~d--~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 143 (353)
T 3vgz_A 68 GGVVYRLD--PVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQP 143 (353)
T ss_dssp SEEEEEEC--TTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEE
T ss_pred CccEEEEc--CCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCC
Confidence 56677777 3455566666543 457889999999855 45566899999999999988877 33322 27
Q ss_pred EEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685 97 FCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (737)
Q Consensus 97 ~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v 174 (737)
.+++|+|+ +.++++++ .++.|.+||..... ....+..+...+.+++|+| +++.+++++.++.|.+
T Consensus 144 ~~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 144 RELVADDA--TNTVYISGIGKESVIWVVDGGNIK----------LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELIT 210 (353)
T ss_dssp EEEEEETT--TTEEEEEEESSSCEEEEEETTTTE----------EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEE
T ss_pred ceEEECCC--CCEEEEEecCCCceEEEEcCCCCc----------eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEE
Confidence 89999999 67666655 47899999998532 2344443555688999999 5577778888999999
Q ss_pred EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC-CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
||+.+++.. .. +.. ...+...+.+++|+|++..++++...++.|.+||+.+++.+..
T Consensus 211 ~d~~~~~~~--------------~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 211 IDTADNKIL--------------SR--------KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp EETTTTEEE--------------EE--------EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred EECCCCeEE--------------EE--------EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999877522 00 111 1123446788999998543444455569999999988765544
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
+.. . ....++|+|+|++++++. .++.|.+||+.+++... ....+..+..++|+|+
T Consensus 269 ~~~--------------------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~d 324 (353)
T 3vgz_A 269 VAA--------------------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK-TFDTPTHPNSLALSAD 324 (353)
T ss_dssp EEC--------------------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EEECCSEEEEEEECTT
T ss_pred EEc--------------------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE-EEecCCCCCeEEEcCC
Confidence 321 0 124589999999777776 58999999999865443 3444556788999998
Q ss_pred CCCccC
Q 004685 333 LNGLEL 338 (737)
Q Consensus 333 ~~~~~~ 338 (737)
.+.+..
T Consensus 325 g~~l~v 330 (353)
T 3vgz_A 325 GKTLYV 330 (353)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 765544
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=8.6e-16 Score=166.41 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=145.0
Q ss_pred cCCceEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685 49 HQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVSG 113 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~la----sgs~dg~V~vwd~~~~--------~~---~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 113 (737)
|.+.|++++|+|+|++|| +|+.|+.|+|||+.++ +. +..+ .+|...|.+++|+|+. +.+|+++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las~ 168 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAVC 168 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEEE
Confidence 567899999999999999 7889999999998754 11 3334 6799999999999985 6899999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.||+|++||++... ......+|...|++++|+| ++++|++|+.||.|++||++ +...
T Consensus 169 s~Dg~v~iwD~~~~~----------~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~---------- 226 (434)
T 2oit_A 169 LADGSIAVLQVTETV----------KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK---------- 226 (434)
T ss_dssp ETTSCEEEEEESSSE----------EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE----------
T ss_pred ECCCeEEEEEcCCCc----------ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc----------
Confidence 999999999998632 1344556889999999999 57899999999999999988 3211
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE-EeCCCc------EEEEECCCCCCcccccCCCCCCCCccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAF------ARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t-~s~Dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (737)
.. ... .......|...+.+++|+++. .++++ +..||. +++|+++......... ...
T Consensus 227 -~~-~~~------~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~--------~~~ 289 (434)
T 2oit_A 227 -KV-IPC------PPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI--------FVN 289 (434)
T ss_dssp -EE-ECC------CTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE--------EEE
T ss_pred -cc-ccC------CcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcc--------eEe
Confidence 00 000 000011244589999999963 44433 344433 8999998653211100 000
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 004685 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~ 309 (737)
+........+... +-..+.+-++.+++++++. .+.|.+....
T Consensus 290 ~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 290 FMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 0000000001111 1223445577788777777 5567777644
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.64 E-value=6.9e-15 Score=154.29 Aligned_cols=250 Identities=10% Similarity=0.055 Sum_probs=163.5
Q ss_pred CCCcccccccccccccccccceeecccC-CceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC-----ccc
Q 004685 23 RPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN 95 (737)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h-----~~~ 95 (737)
....+++|.+|+. .+.+...++..+. ..+..++|+|+++++ +++..++.|.+||+.+++.+..+...+ ...
T Consensus 16 ~~~~~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~ 93 (349)
T 1jmx_B 16 VTNYPNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 93 (349)
T ss_dssp EEETTTEEEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred EeCCCCeEEEEEC--CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence 3445788999984 4455666666443 257899999999865 455678999999999998887763233 234
Q ss_pred eEEEEEeeCCCCCEEEEEECC------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685 96 VFCTKFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (737)
Q Consensus 96 V~~v~~sp~~~~~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 163 (737)
+.+++|+|+ +.+|++++.+ +.|.+||+...... ..+..+. +...+.+++|+|++ +++
T Consensus 94 ~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~ 162 (349)
T 1jmx_B 94 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY 162 (349)
T ss_dssp SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE
T ss_pred ccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE
Confidence 789999999 7888888765 89999999853211 1123333 34468899999955 544
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCC-----------------Cc--c-------------------------ceEEEe
Q 004685 164 WSASEDGTLRQHDFRQGSSCPPAGSSH-----------------QE--C-------------------------RNILLD 199 (737)
Q Consensus 164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~-----------------~~--~-------------------------~~~~~~ 199 (737)
+++. .|.+||+.+++......... .. . ....++
T Consensus 163 -~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 163 -VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp -EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred -EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 4543 49999998876432111110 00 0 000012
Q ss_pred ccCCceeeccCCCCCccceEEEEEec-CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
...+....+.. ......+.+++|+| + +++++++ ++.|.+||+.+++.+..+.. .
T Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~--------------------~- 294 (349)
T 1jmx_B 240 LKTGKTHTQEF-ADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAANL--------------------D- 294 (349)
T ss_dssp TTTCCEEEEEE-EECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEEC--------------------S-
T ss_pred ccCCcEEeccc-ccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEcC--------------------C-
Confidence 22222111111 11233567889999 7 5677777 88999999988765433311 1
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
..+.+++|+|+|++|++++.++.|.+||+.+++..
T Consensus 295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp -SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred -CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 13678999999999999888999999999986543
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=2.1e-15 Score=161.34 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 53 VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
+.+++|+|||++|+..... ..|.+||+.+++..... ..+......+.|+|+ ++.|+.++.++.|++||+.....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEEEEcCCcEEEEECCCCCc
Confidence 7788999999998876543 46888999888754433 333333344789999 79999999999999999875332
Q ss_pred CCCCCCCCCCceeeccCCCceeE-------------------EEEecCCCcEEEEE-----eCCCcEEEEEcCCCCCCCC
Q 004685 130 RGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SEDGTLRQHDFRQGSSCPP 185 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~p~~~~~l~s~-----s~Dg~I~vwdl~~~~~~~~ 185 (737)
......+...... +.|+|++ ..++.. ..+..|.+||+.+++.
T Consensus 115 ----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~--- 180 (396)
T 3c5m_A 115 ----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGEL--- 180 (396)
T ss_dssp ----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCE---
T ss_pred ----------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcE---
Confidence 1122222221111 2344522 322222 3445677777766541
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCcccccCCCC
Q 004685 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D------g~i~iwd~~~~~~~~~~~~~~~ 259 (737)
..+. .+...+..+.|+|+++..|+..+.+ ..|.+||+.........
T Consensus 181 --------------------~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----- 232 (396)
T 3c5m_A 181 --------------------EVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK----- 232 (396)
T ss_dssp --------------------EEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-----
T ss_pred --------------------Eeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-----
Confidence 1111 1234578899999334666655543 36888888654321110
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA 311 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-----g~v~iwd~~~~ 311 (737)
.......+..++|+|+|++|+.++.+ +.|++||+.++
T Consensus 233 ---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 233 ---------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ---------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ---------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 00111147889999999988777653 34888887664
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.61 E-value=7.1e-14 Score=160.64 Aligned_cols=205 Identities=10% Similarity=-0.008 Sum_probs=133.8
Q ss_pred eecccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccceE---------EEEEe--eCCCCCE-E
Q 004685 45 ELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-V 110 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~V~---------~v~~s--p~~~~~~-l 110 (737)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..+...+. ...|+ |+ ++. |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeEE
Confidence 466799999999999887777777 56889999996545445555 45655655 66676 88 566 6
Q ss_pred EEEEC-CCcEEEEecC--C-CCCCCCCCCCCCCceeecc-----CCCceeEEEEecCCCcEEEEEeCC----------Cc
Q 004685 111 VSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------GT 171 (737)
Q Consensus 111 ~sgs~-dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~D----------g~ 171 (737)
+.++. +..|.++++. . .. ...+.. |...+.+++|+| +++.|++++.+ ..
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence 65543 5666666654 1 11 222333 566788999999 55777777766 57
Q ss_pred EEEEEcCC------CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--------
Q 004685 172 LRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-------- 237 (737)
Q Consensus 172 I~vwdl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-------- 237 (737)
|.+||+.+ +... .+. ..+...+..++|+|+ ++.|+.++.+
T Consensus 163 i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp EEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTC
T ss_pred EEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCCC
Confidence 99999877 3311 111 012245677899998 5778776644
Q ss_pred CcEEEEECC-CCC--CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--eEEEEEcCC
Q 004685 238 AFARLYDRR-MLP--PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH 310 (737)
Q Consensus 238 g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg--~v~iwd~~~ 310 (737)
..|++||+. ++. ....+. . .....+..++|+|||++++++..++ .|++||+.+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~-------------------~-~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLL-------------------G-GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEE-------------------E-ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred cEEEEEEECCCCcccccEEeC-------------------C-CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 379999998 441 111110 0 1112488999999999877777788 555555444
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=3.6e-13 Score=142.11 Aligned_cols=185 Identities=5% Similarity=-0.058 Sum_probs=120.8
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc----
Q 004685 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG---- 91 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~---- 91 (737)
.++.+.+++ ..+.+.+.++..+..+ .++|+|||++|+++. .++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 456788887 4556667788777666 899999999998886 3678999999999888877322
Q ss_pred -CccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEe
Q 004685 92 -HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSAS 167 (737)
Q Consensus 92 -h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s 167 (737)
+......++|+|+ +++|+++.. ++.|.+||+.... .+.. +. .. ....+.+.|.+...+++.+
T Consensus 105 ~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~~----------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 105 QGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKGD----------YVEDVTA-AA-GCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTTE----------EEEEEGG-GT-TEEEEEECTTSSSEEEEEE
T ss_pred ccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCCc----------EEEEEec-CC-CcceeEEcCCCCeeEEEEC
Confidence 2345678999999 788887764 6899999998632 1333 22 22 2233567786667888999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.||.+.+|++....... .. .. . .......... ..+.++++ +..++..+.++.+.++|+..
T Consensus 171 ~dg~~~~v~~~~~g~~~----------~~-~~--~-----~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVA----------SQ-SR--S-----KQMFSVKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp TTSSEEEEEECTTSSEE----------EE-EE--C-----CCCSCTTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSS
T ss_pred CCCcEEEEEECCCCcEe----------ee-cc--c-----cceEcCCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecC
Confidence 99999999986532110 00 00 0 0000001111 12233565 35666667889999999875
Q ss_pred C
Q 004685 248 L 248 (737)
Q Consensus 248 ~ 248 (737)
.
T Consensus 231 ~ 231 (361)
T 2oiz_A 231 D 231 (361)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=1.1e-13 Score=160.95 Aligned_cols=112 Identities=8% Similarity=0.045 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccc-----eEEEEEeeCCCCCEEEEEECC---------C
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------A 117 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~-----V~~v~~sp~~~~~~l~sgs~d---------g 117 (737)
...+++|+|||++|+++ |+.|++||+.+++....+ ..|... ...++|||+ |++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccce
Confidence 35578999999999987 899999999999887666 566532 244889999 7999888876 5
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
.+.+||+..+. ...+..|...+...+|+| +++.|+.+ .|+.|.+||+.++.
T Consensus 93 ~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 93 SYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCc
Confidence 67799998643 233455777899999999 45666666 46899999998775
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=6.3e-14 Score=148.45 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=118.1
Q ss_pred EEEEEeCC--CcEEEEEC--CCCeEEE--EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC-CCCCCCCCCCC
Q 004685 64 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA 136 (737)
Q Consensus 64 ~lasgs~d--g~V~vwd~--~~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~ 136 (737)
+|+.|+.. +.|.+|++ .+++... .........+..++|+|+ +++|++++.+ .|.+|++. .+..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~~------- 73 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTEI------- 73 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTEE-------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCCE-------
Confidence 35555543 46777665 4555422 221123456889999999 7889888888 99999986 3211
Q ss_pred CCCceeeccCCCceeEEEEecCCCc--EEEEEe-------------CCCcEEEEEcCC-CCCCCCCCCCCCccceEEEec
Q 004685 137 ITPSALYQCHTRRVKKLAVEVGNPH--VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s-------------~Dg~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~ 200 (737)
..+.....+ +.+.+++|+|+ ++ +++++. .++.+.+|++.. ++.. ..+..
T Consensus 74 -~~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~- 138 (365)
T 1jof_A 74 -VHEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQN- 138 (365)
T ss_dssp -EEEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEE-
T ss_pred -EEeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEee-
Confidence 001111111 23556899994 45 344553 689999999974 3210 00000
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (737)
+. ..+...+.+++|+|+ +++++++. .++.|++||+. +++..... . +.... .
T Consensus 139 -------~~--~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~-----------~-----~~~~~-~ 191 (365)
T 1jof_A 139 -------YE--YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVG-----------S-----VDAPD-P 191 (365)
T ss_dssp -------EE--CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEE-----------E-----EECSS-T
T ss_pred -------EE--eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEee-----------e-----EecCC-C
Confidence 00 012346789999998 46676665 46899999998 54421100 0 00000 0
Q ss_pred ccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685 279 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 279 ~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
+..+..++|+|+|++|++++. ++.|.+|++..
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 124888999999999988876 78999998764
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=3.1e-13 Score=142.60 Aligned_cols=193 Identities=9% Similarity=0.061 Sum_probs=122.5
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEEec
Q 004685 61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (737)
Q Consensus 61 ~g~~lasgs------~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iwd~ 124 (737)
++++++... .|+.|.+||..+++.+..+ ..+..+ .++|+|+ +.+++++. .++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 3789999999999988888 455555 8999999 78887776 3678999998
Q ss_pred CCCCCCCCCCCCCCCceeecc------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685 125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~ 196 (737)
.+.. .+..+.. +......++++| ++++|+++.. +++|.+||+.+.+.+
T Consensus 89 ~t~~----------~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~------------- 144 (361)
T 2oiz_A 89 DKLT----------FEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV------------- 144 (361)
T ss_dssp TTCC----------EEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred cCCc----------EEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence 7532 1333321 234567899999 5567766653 689999999887522
Q ss_pred EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCC
Q 004685 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.. .+.. .....+.+.|.+...+++.+.||.+.+|++.. ++....... ...+ .
T Consensus 145 -~~-------~i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~-------~ 197 (361)
T 2oiz_A 145 -ED-------VTAA-----AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF-------S 197 (361)
T ss_dssp -EE-------EGGG-----TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-------C
T ss_pred -EE-------EecC-----CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-------c
Confidence 00 0100 11123556776557888889999999999864 322101000 0000 0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.... ...+.++|++..++..+.++.|+++|+...
T Consensus 198 ~~~~--~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 198 VKDD--PIFIAPALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp TTTS--CBCSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred CCCC--ceEEEecccCCEEEEEeCCCeEEEEEecCC
Confidence 0000 112334677878888888899999998753
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=169.12 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=101.7
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEEEeC------
Q 004685 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE------ 168 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~------ 168 (737)
+++|+|+ +. ++..+.|+.|++||+..+.. ...+..+.. .+.+++|+| ++++|++++.
T Consensus 20 ~~~~s~d--g~-~~~~~~d~~i~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWISG--QE-YLHQSADNNIVLYNIETGQS----------YTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESSS--SE-EEEECTTSCEEEEESSSCCE----------EEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred ccEECCC--Ce-EEEEcCCCCEEEEEcCCCcE----------EEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence 7899999 65 44455799999999986432 233333332 388999999 5677777765
Q ss_pred ---CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 169 ---DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 169 ---Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
++.|++||+.+++.... ..+ ...+..++|+|+ ++.|+.+. ++.|++||+
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp SCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEESS
T ss_pred eecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEeC
Confidence 78999999988763100 000 134778999998 57888775 789999999
Q ss_pred CCCCCcccccCCCCCCCCccccccccccCCCCcc--------cceeEEEEcCCCCEEEEEeCC-CeEEEEEc
Q 004685 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDV 308 (737)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~v~~sp~g~~l~~g~~d-g~v~iwd~ 308 (737)
.+++.......... ... . .|+.. ....+++|||||++|+.++.| +.+.+|.+
T Consensus 138 ~~g~~~~l~~~~~~----~~v-----~--~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 138 PGDPPFQITFNGRE----NKI-----F--NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp TTSCCEECCCCCBT----TTE-----E--ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEecCCCc----CCe-----E--cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 87764322110000 000 0 01100 012579999999999998865 45555544
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=4.4e-12 Score=129.09 Aligned_cols=160 Identities=8% Similarity=0.088 Sum_probs=107.1
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee------ccCCCceeEEEEecCCCcEEE
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVW 164 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~ 164 (737)
++-..+.+++++++ +.++++...++.|.+||.... .+..+ ..+...+..+++.+.++.+++
T Consensus 27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g~-----------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGR-----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTSC-----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred CccCCCceEEECCC--CCEEEEECCCCEEEEECCCCc-----------EEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence 34567899999998 688888888999999997631 12222 234457889999643666666
Q ss_pred EEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 165 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (737)
Q Consensus 165 s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw 243 (737)
+... ++.|.+||. .++.. .. +. ..+...+.+++++|+ ++++++...++.|.+|
T Consensus 94 ~~~~~~~~i~~~d~-~g~~~--------------~~--------~~--~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 94 TERSPTHQIQIYNQ-YGQFV--------------RK--------FG--ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF 147 (286)
T ss_dssp EECGGGCEEEEECT-TSCEE--------------EE--------EC--TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred EcCCCCCEEEEECC-CCcEE--------------EE--------ec--CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence 6543 789999993 33311 00 00 112345789999997 5788877788999999
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
|.. ++.+..+.. .++ ...+..++++|+|+++++...++.|++||..
T Consensus 148 ~~~-g~~~~~~~~------------------~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 148 DQN-GNVLHKFGC------------------SKH-LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp CTT-SCEEEEEEC------------------TTT-CSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred cCC-CCEEEEeCC------------------CCc-cCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 964 332222110 001 1137899999999977777779999999964
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=2.7e-12 Score=133.64 Aligned_cols=180 Identities=8% Similarity=0.026 Sum_probs=113.5
Q ss_pred ccceEEEEEeeCCCCCEEEEEECC------------------------CcEEEEecCCCCCCCCCCCCCCCceeec-cCC
Q 004685 93 SANVFCTKFVPETSDELVVSGAGD------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHT 147 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~d------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~ 147 (737)
-..+.+++++|+ |+++++...+ +.|.+||..++.. +..+. .+.
T Consensus 23 l~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------~~~~~~~~~ 90 (329)
T 3fvz_A 23 PGQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------LQSSGKNLF 90 (329)
T ss_dssp CSCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------EEEECTTTC
T ss_pred cCCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------EeccCCCcc
Confidence 356899999999 7888888777 4799999875321 22222 344
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (737)
Q Consensus 148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (737)
..+..++++| +++++++...++.|.+||........ ..+ . ..+ .......+......++++|++
T Consensus 91 ~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~----------~~~-~-~~~---~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 91 YLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPL----------LIL-G-RSM---QPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp SSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCS----------EEE-S-BTT---BCCCSTTCCSSEEEEEECTTT
T ss_pred CCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEE----------EEe-c-ccC---CCCCCccccCCCcEEEEeCCC
Confidence 5788999999 55788888889999999976542110 000 0 000 000012334567899999954
Q ss_pred CcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEE
Q 004685 228 PHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYL 305 (737)
Q Consensus 228 ~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~i 305 (737)
+.++++.+ .++.|++||. .+..+..+....... ....++ -.....++++|+ +.++++...++.|++
T Consensus 155 g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~----------~~~~~~-~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGS----------SPRPGQ-FSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp CCEEEEECSSCCEEEEECT-TSCEEEEECEECCSS----------SCCTTE-ESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCC----------CCCCcc-cCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 67888876 6899999994 444433332110000 000001 113788999999 666666667899999
Q ss_pred EEcCCCC
Q 004685 306 MDVNHAG 312 (737)
Q Consensus 306 wd~~~~~ 312 (737)
|+..+++
T Consensus 223 ~~~~~G~ 229 (329)
T 3fvz_A 223 FKTDTKE 229 (329)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9988654
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=5.5e-12 Score=131.42 Aligned_cols=197 Identities=5% Similarity=0.009 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
..|.+++|++++..++..+.++.++.| .++....+ ..+...+.+++|+|+ +.+++++..++.|.+||......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~- 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEI- 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE-
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcE-
Confidence 457888999988877777888899999 34555566 556677899999998 68888888899999999875321
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
......+...+.+++++| +++++++...+ +.|.+||..+.... .+
T Consensus 79 ---------~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~--------- 127 (333)
T 2dg1_A 79 ---------KRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ------------DI--------- 127 (333)
T ss_dssp ---------EEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE------------EE---------
T ss_pred ---------EEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE------------EE---------
Confidence 122224567899999999 45777776665 68999998765421 00
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
+. .......+.+++++|+ ++++++... .+.|..||...++.. .+. ....
T Consensus 128 -~~-~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~---------------------~~~~ 182 (333)
T 2dg1_A 128 -IE-DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PII---------------------QNIS 182 (333)
T ss_dssp -EC-SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEE---------------------EEES
T ss_pred -Ec-cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE-Eee---------------------cCCC
Confidence 00 0112346889999997 466666543 245666665433211 100 0011
Q ss_pred ceeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 004685 281 HLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~ 310 (737)
.+..++|+|+|++|+++. .++.|++||+.+
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 367899999998766554 578999999864
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=1.9e-11 Score=135.71 Aligned_cols=206 Identities=10% Similarity=0.048 Sum_probs=138.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
|.+.++++...++.|.++|..+++.+..+. ....+.++.|+|+ +.++++++.|+.|.+||+...+. +.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence 445677788889999999999999998883 3346779999999 79999999999999999952111 12
Q ss_pred ceeeccCCCceeEEEEe----cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC-
Q 004685 140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ- 214 (737)
Q Consensus 140 ~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (737)
+..+.. ......++|+ |++..++++...++.|.++|..+.+.+. .+ . .+.. .+.....|
T Consensus 233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-----------~i-~--~~~~-~~~~~~~~p 296 (567)
T 1qks_A 233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------IQ-S--TRGM-TYDEQEYHP 296 (567)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------EE-E--CCEE-CTTTCCEES
T ss_pred eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-----------EE-e--cccc-ccccccccC
Confidence 344443 3346789999 6554455555667999999987766331 00 0 0000 00000001
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE
Q 004685 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l 294 (737)
...+..+.++++++.+++....+|.|.++|....+.+.... + ........+.|+|+|+++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~----------------i----~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE----------------I----SAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------E----ECCSSEEEEEECTTSCEE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------e----eccccccCceECCCCCEE
Confidence 12567788888777777777788999999987643211100 0 001136678999999998
Q ss_pred EEEeC-CCeEEEEEcCCCCc
Q 004685 295 LLSYS-GEHVYLMDVNHAGG 313 (737)
Q Consensus 295 ~~g~~-dg~v~iwd~~~~~~ 313 (737)
+++.. ++.|.++|+.+++.
T Consensus 357 ~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEE
T ss_pred EEEeCCCCeEEEEECCCCcE
Confidence 88775 78999999998653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.46 E-value=7.3e-12 Score=130.41 Aligned_cols=238 Identities=14% Similarity=0.091 Sum_probs=161.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685 50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~d------------------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
-+.|.+|+++|+|+++++...+ +.|.+||..+++.+..+...+-.....++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 3679999999999999988877 479999999898877763345567899999998
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee---------ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEE
Q 004685 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH 175 (737)
Q Consensus 106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vw 175 (737)
+.++++...++.|++|+...... .+..+ ..+......++++|+++.++++.+ .++.|++|
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~~---------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKEG---------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSSC---------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCeE---------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 78888888899999999763210 12222 234557899999996668888886 68999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
|. .+... ..+-....+ ....+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus 172 ~~-~g~~~-----------~~~~~~g~~----~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 172 SP-SGKFV-----------TQWGEESSG----SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp CT-TSCEE-----------EEECEECCS----SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred cC-CCCEE-----------EEeccCCCC----CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 94 33311 000000000 000012234578999999756888888889999999998776554432
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcC------CCCEEEEEeCCCeEEEEEcCCCCcceeee---ecCCCCee
Q 004685 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRY---TVGDASKI 326 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp------~g~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~ 326 (737)
.. .....+..++|+| +|...++...+..|++|++.+++....+. .....+..
T Consensus 236 ~~-------------------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 236 HA-------------------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp CT-------------------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred cc-------------------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 11 1112477889999 33333333335589999999876554432 33445667
Q ss_pred eeeccCC
Q 004685 327 MSFTPTL 333 (737)
Q Consensus 327 ~~~~p~~ 333 (737)
++++|+.
T Consensus 297 ia~~~dG 303 (329)
T 3fvz_A 297 IVASEDG 303 (329)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 8888875
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=5e-12 Score=132.50 Aligned_cols=73 Identities=10% Similarity=0.015 Sum_probs=57.4
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcE-EEEcCCCCCCccccCCCCCC
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP 713 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i-~lW~~~~~~~~~~~~~~~~~ 713 (737)
|+ |+ ++++++.|+.++|| +.++++ ..+..+.+.|.+++|+| .++++++.++.. +||.+. ++ ...+.+|...
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred Ec-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 78 88 99999999999999 987776 45555688999999999 788888877765 788776 44 5556777765
Q ss_pred Ch
Q 004685 714 DT 715 (737)
Q Consensus 714 ~~ 715 (737)
++
T Consensus 343 ~l 344 (347)
T 2gop_A 343 IF 344 (347)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.45 E-value=4e-12 Score=146.01 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=64.4
Q ss_pred ecccccceeeeecccCCCCEEEEecCCC--cEEEEEcCcccEEEEeecCCCc--------eEEEEecCCCCeEEEEecCC
Q 004685 622 HCNVGTDIKQASFLGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAV--------VNCVQCHPFDCVVATSGIDN 691 (737)
Q Consensus 622 h~~~~~~i~~~~~~s~d~~~l~sgs~D~--~i~iWd~~t~~~~~~l~gH~~~--------V~~v~~sp~~~~l~S~~~Dg 691 (737)
|...+..+. |||||+++++++.|+ .|++||+.++++...+.+|... +.+++|+|+++++++++. +
T Consensus 240 ~~~~~~~~~----~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 240 PEEAIAQAE----WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp TTBCEEEEE----ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred CCceEcceE----ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 334444455 899999999999999 6777777788877666666544 678999999999999999 9
Q ss_pred cEEEE--cCCCCCCccccCCCCCC
Q 004685 692 TIKIW--TPSASVPSIVSGGAAGP 713 (737)
Q Consensus 692 ~i~lW--~~~~~~~~~~~~~~~~~ 713 (737)
+++|| |+.+++ +..+.+|.+.
T Consensus 315 ~~~l~~~d~~~~~-~~~l~~~~~~ 337 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAAGPWTE 337 (662)
T ss_dssp SCEEEEEETTTTE-EEECCSSCCE
T ss_pred ccEEEEEECCCCc-EEEecCCCCe
Confidence 99999 655554 5555655443
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.45 E-value=3.7e-12 Score=134.81 Aligned_cols=245 Identities=11% Similarity=0.095 Sum_probs=148.5
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCccceEEEEEeeCCCCCE--EEEEE-----------
Q 004685 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA----------- 114 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~sgs----------- 114 (737)
+...+..++|+|+|++|++++.+ .|.+|++. +++............+.+++|+|+ +++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence 34568899999999999999887 99999997 776654331111123567899999 673 44542
Q ss_pred --CCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcC-CCCCCCCCCCC
Q 004685 115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPAGSS 189 (737)
Q Consensus 115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~-~~~~~~~~~~~ 189 (737)
.++.+.+|++... +.. ...+..+. .+...+.+++|+|+ +++++++. .++.|.+||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~-g~~-----~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~------ 181 (365)
T 1jof_A 115 YKFAGYGNVFSVSET-GKL-----EKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVE------ 181 (365)
T ss_dssp SSSCCEEEEEEECTT-CCE-----EEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEE------
T ss_pred ecCCceEEEEccCCC-CcC-----cceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEE------
Confidence 6899999999741 110 00011111 24567899999995 56666654 46799999998 44311
Q ss_pred CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC--CCCCcc---cccCCCCCCCC
Q 004685 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR--MLPPLT---SCQKRMSPPPC 263 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~--~~~~~~---~~~~~~~~~~~ 263 (737)
.+. .+ ..+.+...+..++|+|+ ++++++++ .++.|.+|++. +++... .+..
T Consensus 182 ------~~~--------~~-~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~------- 238 (365)
T 1jof_A 182 ------LVG--------SV-DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL------- 238 (365)
T ss_dssp ------EEE--------EE-ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-------
T ss_pred ------Eee--------eE-ecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-------
Confidence 000 01 01112345789999998 56776665 47899999875 333210 0000
Q ss_pred ccccccccccCCCCcc-----cceeEEE-EcCCCCEEEEEeCC-C-----eEEEEEcC-CCCccee--ee-ecCCCCeee
Q 004685 264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN-HAGGRAM--RY-TVGDASKIM 327 (737)
Q Consensus 264 ~~~~~~~~~~~~~~~~-----~~i~~v~-~sp~g~~l~~g~~d-g-----~v~iwd~~-~~~~~~~--~~-~~~~~~~~~ 327 (737)
. +... .++.. ..+..++ |+|||++|+++..+ + .|.+|++. +++.... .. ..+.....+
T Consensus 239 ---~-~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 312 (365)
T 1jof_A 239 ---I-PPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN 312 (365)
T ss_dssp ---S-CTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred ---C-CCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence 0 0000 01110 0378899 99999998887653 3 89999996 4432221 12 234456678
Q ss_pred eecc---CCCCccC
Q 004685 328 SFTP---TLNGLEL 338 (737)
Q Consensus 328 ~~~p---~~~~~~~ 338 (737)
+|+| +.+.+..
T Consensus 313 a~sp~~~dg~~l~v 326 (365)
T 1jof_A 313 AVSPCPWSDEWMAI 326 (365)
T ss_dssp CEEECTTCTTEEEE
T ss_pred eecCCCcCCCEEEE
Confidence 8888 5554443
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=6.5e-10 Score=113.33 Aligned_cols=202 Identities=9% Similarity=0.038 Sum_probs=137.2
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
+..+...+.+|+++++|+++++...++.|.+||.. ++........+...+.++++.++ +.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence 44556789999999999988877768899999988 55433221234577999999998 6888877778899999875
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
. . . . ...+......+.++++++ ++.++++...++.|..||. .+... .+.
T Consensus 87 g-~--~------~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~------ 135 (299)
T 2z2n_A 87 G-I--I------K-EYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYE------ 135 (299)
T ss_dssp S-C--E------E-EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEE------
T ss_pred C-c--E------E-EEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------Eec------
Confidence 2 1 0 0 111122445788999998 5577777777889999997 43311 000
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
.+.....+.+++++++ +.++++...++.|..||. +++... +.. . .....+..+
T Consensus 136 -----~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------------------~-~~~~~~~~i 188 (299)
T 2z2n_A 136 -----LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-FKI------------------P-TPASGPVGI 188 (299)
T ss_dssp -----CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-EEC------------------S-STTCCEEEE
T ss_pred -----CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-eeC------------------C-CCCCcceeE
Confidence 1112345788999987 467777767789999998 443211 100 0 001137889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEc
Q 004685 286 TFSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 286 ~~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
+++++|..+++...++.|.+||.
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT
T ss_pred EECCCCCEEEEccCCceEEEECC
Confidence 99999997666666889999987
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.41 E-value=1.9e-11 Score=130.13 Aligned_cols=252 Identities=9% Similarity=-0.041 Sum_probs=154.2
Q ss_pred ccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE--eeCCCCC
Q 004685 31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDE 108 (737)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~ 108 (737)
++|.....+.+......+|...+.+++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....| +|+ +.
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~ 137 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CT 137 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SS
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CC
Confidence 3443334555555556667666667889999999999999999999999998876655 455555554444 677 67
Q ss_pred EEEEEE----------------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEec-CCCcEEEE
Q 004685 109 LVVSGA----------------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWS 165 (737)
Q Consensus 109 ~l~sgs----------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s 165 (737)
+++... .+..|.+||+..+. ...+..+...+..+.|+| ++ ..|+.
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~ 205 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAF 205 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEE
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEE
Confidence 776432 34679999988643 344455677789999999 65 55555
Q ss_pred EeCC------CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeCCC
Q 004685 166 ASED------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDA 238 (737)
Q Consensus 166 ~s~D------g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~Dg 238 (737)
+..+ ..|.++|+...... .+... .....+....|+|++ +.|+ ++..++
T Consensus 206 ~~~~~~~~~~~~l~~~d~~~~~~~-----------------------~l~~~-~~~~~~~~~~~spdg-~~l~~~~~~~~ 260 (388)
T 3pe7_A 206 CHEGPHDLVDARMWLINEDGTNMR-----------------------KVKTH-AEGESCTHEFWVPDG-SALVYVSYLKG 260 (388)
T ss_dssp EECSCTTTSSCSEEEEETTSCCCE-----------------------ESCCC-CTTEEEEEEEECTTS-SCEEEEEEETT
T ss_pred EEecCCCCCcceEEEEeCCCCceE-----------------------EeeeC-CCCcccccceECCCC-CEEEEEecCCC
Confidence 4442 36777776654311 11110 111346778999985 5454 443322
Q ss_pred ----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE---------eCCCeEEE
Q 004685 239 ----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYL 305 (737)
Q Consensus 239 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g---------~~dg~v~i 305 (737)
.|++||+.+++...... +. ...+.......++|+|||+.|+.. ..+..|++
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~-----------~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLTS-----------MP-----ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEEE-----------EC-----CEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCcceEEEEecCCCceEEEEc-----------CC-----CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 39999998775321100 00 000000001123799999988865 44679999
Q ss_pred EEcCCCCcceeeeecCC-----------CCeeeeeccCCCCccCC
Q 004685 306 MDVNHAGGRAMRYTVGD-----------ASKIMSFTPTLNGLELQ 339 (737)
Q Consensus 306 wd~~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~ 339 (737)
||+.+++. ..+..+.. .....+|+|+++.+.+.
T Consensus 325 ~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 325 FNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp EETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred EeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 99998553 33333333 35667899988766554
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=4.3e-11 Score=138.48 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=56.3
Q ss_pred ccCCCCEEEEecCCCc--EEEEEcCcccEEEEeecCCCceEEEEecCCCCeEE-EEe---cCCcEEEEcCCCCCC
Q 004685 635 LGQRGDYIASGSDDGR--WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVA-TSG---IDNTIKIWTPSASVP 703 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~--i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~-S~~---~Dg~i~lW~~~~~~~ 703 (737)
+++++.+++++..|+. |++||+.+|+.++.+..|.+.|.+++++|+++.|+ +.+ ..++|.+||+.+++.
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 417 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 5678889999999985 56678778999999999988999999999987444 433 357899999998873
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.36 E-value=1.3e-10 Score=121.06 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=158.3
Q ss_pred cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~ 105 (737)
.+..++.| ..+....+.++...+.+++|+++|++++++..++.|.+||..+++..... ..+...+.+++|+|+
T Consensus 25 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d- 97 (333)
T 2dg1_A 25 SESELQTI-----TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD- 97 (333)
T ss_dssp CGGGSCEE-----ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-
T ss_pred ecccCccc-----ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-
Confidence 34555555 23455667777778899999999998888989999999999888765544 346678999999999
Q ss_pred CCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeC------CCcEE
Q 004685 106 SDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLR 173 (737)
Q Consensus 106 ~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~ 173 (737)
+.++++...+ +.|.+||...... ...+ ..+...+.+++++| ++.++++... .+.|.
T Consensus 98 -g~l~v~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 98 -GRLFVCYLGDFKSTGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp -SCEEEEECTTSSSCCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEE
T ss_pred -CcEEEEeCCCCCCCceEEEEeCCCCEE----------EEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEE
Confidence 6887777666 6899999875321 1111 12345789999999 5577766553 24455
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcc
Q 004685 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLT 252 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~ 252 (737)
.+|...++.. .+. .....+..++|+|++..++++.+.++.|.+||+.. +..+.
T Consensus 166 ~~~~~~~~~~------------~~~--------------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 166 YVSPDFRTVT------------PII--------------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp EECTTSCCEE------------EEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred EEeCCCCEEE------------Eee--------------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence 5554433210 000 01124678999997433455556688999999864 22221
Q ss_pred cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC------CCee
Q 004685 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKI 326 (737)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~ 326 (737)
.+.. ..+ ... .++ ..+..++++++|.++++...++.|.+||.. ++.......... .+..
T Consensus 220 ~~~~--------~~~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 220 PFGA--------TIP--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEE--------EEE--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCE
T ss_pred cccc--------eEE--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcce
Confidence 1100 000 000 111 137789999999988877788999999984 343332222221 4667
Q ss_pred eeeccCCCC
Q 004685 327 MSFTPTLNG 335 (737)
Q Consensus 327 ~~~~p~~~~ 335 (737)
++|+|+...
T Consensus 285 ~~~~~dg~~ 293 (333)
T 2dg1_A 285 PQFIPGTNQ 293 (333)
T ss_dssp EEECTTSCE
T ss_pred EEECCCCCE
Confidence 778776433
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.36 E-value=1.6e-11 Score=142.84 Aligned_cols=261 Identities=10% Similarity=0.090 Sum_probs=159.6
Q ss_pred ccccccccccccccccceeecccCCc-----eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEcccC
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH 92 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~-----V~~l~~s~~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~h 92 (737)
+++|.+|+ ..+.+....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... + ..|
T Consensus 35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~ 110 (740)
T 4a5s_A 35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERI 110 (740)
T ss_dssp TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCC
T ss_pred CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c-ccC
Confidence 67889998 4445555667777643 2447899999999998876 566799999987653 4 567
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---------ceeEEEEecCCCcEE
Q 004685 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVV 163 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l 163 (737)
...+...+|||+ |+.|+.+. |+.|++|++..+....... .-.....+.++.+ ....+.|+| +++.|
T Consensus 111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l 185 (740)
T 4a5s_A 111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL 185 (740)
T ss_dssp CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence 788999999999 78888875 6899999987643221100 0000111222222 224589999 55666
Q ss_pred EEEeCC-CcEEEEEcCCCCCC------------CCCCCCCCccceEEEeccC---C---ceeeccCCC---CCccceEEE
Q 004685 164 WSASED-GTLRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC 221 (737)
Q Consensus 164 ~s~s~D-g~I~vwdl~~~~~~------------~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~v~~i 221 (737)
+..+.| +.+.+|++...... +..+.........++++.. + ....+.... .+...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 666544 44888877432211 0111112223455677766 5 333332211 266778999
Q ss_pred EEecCCCcEEEEEeC----CCcEEEEECCCCCC------cccccCCCCCCCCccccccccccCCCCcccce-----eEEE
Q 004685 222 DISSTRPHLLLVGGS----DAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-----THVT 286 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~v~ 286 (737)
+|+|+ ++.++.... +..|++||+.+++. +..+. ..++.. .+ ..++
T Consensus 266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------------------~~~~~~-~v~~~~~~~p~ 325 (740)
T 4a5s_A 266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------------------EMSTTG-WVGRFRPSEPH 325 (740)
T ss_dssp EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------------------EECSSS-CSSSSSCCCCE
T ss_pred EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------------------eccCCc-eEccCcCCCce
Confidence 99998 565555432 34799999987751 11110 000110 12 3578
Q ss_pred EcCCCCEEE-EEeC-C--CeEEEEEcCCCCccee
Q 004685 287 FSPNGEEVL-LSYS-G--EHVYLMDVNHAGGRAM 316 (737)
Q Consensus 287 ~sp~g~~l~-~g~~-d--g~v~iwd~~~~~~~~~ 316 (737)
|+|||+.|+ ..+. + ..|++||+..+.....
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence 999999877 6654 3 4788899887554433
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.36 E-value=1.3e-10 Score=118.02 Aligned_cols=221 Identities=10% Similarity=0.124 Sum_probs=149.1
Q ss_pred cccccccccccccccccceeec------ccCCceEEEEE-cCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceE
Q 004685 26 VNHSLQMHSSLVRRLSQERELE------GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVF 97 (737)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~------~H~~~V~~l~~-s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~ 97 (737)
.++.|.+|+.. .+....+. +|...+.++++ .+++.++++... ++.|.+|| .+++.+..+...+...+.
T Consensus 49 ~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~ 124 (286)
T 1q7f_A 49 NNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPR 124 (286)
T ss_dssp GGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEE
T ss_pred CCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCce
Confidence 34567777632 23333442 34567899999 577777777643 78999999 566777666334456789
Q ss_pred EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
++++.|+ +.++++...++.|.+||... . .+..+. .+...+.++++++ +++++++...++.|.+|
T Consensus 125 ~i~~~~~--g~l~v~~~~~~~i~~~~~~g---~--------~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~ 190 (286)
T 1q7f_A 125 GVTVDNK--GRIIVVECKVMRVIIFDQNG---N--------VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVF 190 (286)
T ss_dssp EEEECTT--SCEEEEETTTTEEEEECTTS---C--------EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEE
T ss_pred EEEEeCC--CCEEEEECCCCEEEEEcCCC---C--------EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEE
Confidence 9999998 68888888889999999652 1 122232 3445689999999 55788787888999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccc
Q 004685 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSC 254 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~ 254 (737)
|..... . .. + ....+...+.+++++++ ++++++...++ .|.+||.. ++.+..+
T Consensus 191 ~~~g~~-~--------------~~--------~-~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~ 244 (286)
T 1q7f_A 191 NYEGQY-L--------------RQ--------I-GGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISAL 244 (286)
T ss_dssp ETTCCE-E--------------EE--------E-SCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred cCCCCE-E--------------EE--------E-ccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEE
Confidence 974321 0 00 1 01112346789999997 57888877775 99999964 3333222
Q ss_pred cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
.. ... ...+..++++|+|+++++ +.++.|++|++..
T Consensus 245 ~~------------------~~~-~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ES------------------KVK-HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EE------------------SSC-CSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cc------------------cCC-CCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 11 001 113778999999986666 6799999999865
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.34 E-value=5.1e-11 Score=137.47 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=57.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcC-cccEEEEeecC-CCceEEEEecCCCCeEE----EEecCCcEEEEcCCCCCCccccC
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~-t~~~~~~l~gH-~~~V~~v~~sp~~~~l~----S~~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
++ ++.++++++.|+..+||.++ +|+.++.+..| .+.|.+++++|+++.|+ |...+++|++||+.+++. ..++
T Consensus 327 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~ 404 (695)
T 2bkl_A 327 IV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWA 404 (695)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence 44 78899999999999999776 57778888877 78899999999998555 333467899999998874 3344
Q ss_pred CC
Q 004685 709 GA 710 (737)
Q Consensus 709 ~~ 710 (737)
.+
T Consensus 405 ~~ 406 (695)
T 2bkl_A 405 KV 406 (695)
T ss_dssp EC
T ss_pred cC
Confidence 33
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.34 E-value=3e-10 Score=116.10 Aligned_cols=160 Identities=10% Similarity=0.025 Sum_probs=106.0
Q ss_pred ccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685 90 TGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 90 ~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
..+.....+++|+|+ ++ +++++..++.|..|+.... ...+..+...+.++++++ ++.++++...
T Consensus 24 ~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~-dg~l~v~~~~ 88 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNK-QGHLIACSHG 88 (296)
T ss_dssp ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECT-TCCEEEEETT
T ss_pred ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECC-CCcEEEEecC
Confidence 345567789999999 66 7888888999999998752 234445667789999999 5577777767
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE----Ee---------
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GG--------- 235 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t----~s--------- 235 (737)
++.|.+||..+++.. .+..... ......+..++++|+ ++++++ |+
T Consensus 89 ~~~i~~~d~~~g~~~------------~~~~~~~---------~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 89 LRRLERQREPGGEWE------------SIADSFE---------GKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp TTEEEEECSTTCCEE------------EEECEET---------TEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCC
T ss_pred CCeEEEEcCCCCcEE------------EEeeccC---------CCCCCCCCCEEECCC-CCEEEECCccccccccccccc
Confidence 789999998766521 1110000 001234577899997 577776 32
Q ss_pred ----CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 236 ----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 236 ----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
..+.|..++.. ++ +..+. .+ ......++|+|+|+.+++.+.++.|++|++.
T Consensus 147 ~~~~~~~~l~~~~~~-g~-~~~~~--------------------~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GT-LSAPI--------------------RD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp CCCSSSCEEEEECTT-SC-EEEEE--------------------CC-CSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred cccCCCcEEEEECCC-CC-EEEee--------------------cC-CCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 12455555544 22 11110 01 1136789999999999767778999999987
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.30 E-value=4.2e-11 Score=138.14 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=125.8
Q ss_pred ccCCceEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCeEE-EEEcccCccceEEEEEeeCCCCCEEEEEECCCc---
Q 004685 48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAE--- 118 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~la-----sgs~dg~V~vwd~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~--- 118 (737)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+ ... ........++|+|+ +..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~~~~~~~~wspD--g~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--IEGGKYATPKWTPD--SKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--BSCCTTCCCEECTT--SSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--cCcccccceEEecC--CCEEEEEEecCCCCC
Confidence 4556799999999999998 4455678999999998865 211 11111268999999 789999988776
Q ss_pred ----------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC----cEEEEEcCCCCCCC
Q 004685 119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCP 184 (737)
Q Consensus 119 ----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg----~I~vwdl~~~~~~~ 184 (737)
|++|++.+..... ..+.....+...+..+.|+|++ ++|+.++.++ .|.+|+...+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-- 264 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-- 264 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred ccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce--
Confidence 9999998643211 1122333455678899999955 5555555444 455554333221
Q ss_pred CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe---CCCcEEEEECCCCCC--cccccCCCC
Q 004685 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPP--LTSCQKRMS 259 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s---~Dg~i~iwd~~~~~~--~~~~~~~~~ 259 (737)
..+.. +...+....+ +++ .+++.+. .++.|.+||+.++.. ...+.
T Consensus 265 ----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---- 314 (695)
T 2bkl_A 265 ----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIV---- 314 (695)
T ss_dssp ----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE----
T ss_pred ----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEe----
Confidence 11110 1123344445 544 4544444 258899999876532 01110
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
.+ +....+..++|+ ++.++++...|+..++|.+.
T Consensus 315 --------------~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 315 --------------PE-DSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp --------------CC-CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred --------------cC-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 01 112247788888 67778888889988888765
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=2e-10 Score=119.29 Aligned_cols=183 Identities=5% Similarity=-0.082 Sum_probs=116.5
Q ss_pred CCCcEEEEECCCCeEEEEEcc-----cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004685 70 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (737)
Q Consensus 70 ~dg~V~vwd~~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 144 (737)
.++.|.+||..+++....+.. .......++.+.. +.++++...++.|.+||..+... +..+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~----------~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKE----------VGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCE----------EEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEE----------EEEcC
Confidence 478999999999987665421 1224467787754 36677777789999999986332 34443
Q ss_pred cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004685 145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (737)
Q Consensus 145 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (737)
.......++++++ +.++++...++.|.+||+.+++.. ..+. +............+++
T Consensus 82 -~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~--------------~~i~------~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 -GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEIT--------------GYIE------CPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp -CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEE--------------EEEE------CTTCCTTTCBCCCEEE-
T ss_pred -CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEE--------------EEEE------cCCccccCCCcceEEE-
Confidence 3466889999884 466655558899999999876522 0000 0000011113445666
Q ss_pred cCCCcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004685 225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (737)
Q Consensus 225 p~~~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--- 300 (737)
. ++.++++.. .++.|.+||+.+++.+..+... .....++++|+|++++++..+
T Consensus 139 ~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------------------~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 139 Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------------------IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------------------SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------------------CCccceEEcCCCCEEEEECCCccC
Confidence 3 344555544 4899999999987655443210 024568899999877666554
Q ss_pred -------CeEEEEEcCCC
Q 004685 301 -------EHVYLMDVNHA 311 (737)
Q Consensus 301 -------g~v~iwd~~~~ 311 (737)
+.|.++|..++
T Consensus 196 ~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp CSSCBCCCEEEEEETTTT
T ss_pred CccccCCceEEEEECCCC
Confidence 67888887663
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.28 E-value=7.1e-09 Score=109.32 Aligned_cols=193 Identities=12% Similarity=-0.011 Sum_probs=118.2
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEE
Q 004685 58 WNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLF 122 (737)
Q Consensus 58 ~s~~g~~lasgs~--dg---~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iw 122 (737)
..|++++++.... .. .|.+||..+++.+..+. ....+ .++++|+ ++.++.+. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec-CCCCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777766653 22 88999999999888883 33333 9999999 67777765 36789999
Q ss_pred ecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 123 NLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
|..+... +..+.. +......+.|+|+ +++|++++. ++.|.++| .+++....
T Consensus 103 D~~t~~~----------~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~-------- 162 (373)
T 2mad_H 103 DPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQ-------- 162 (373)
T ss_pred ECCCCcE----------EEEEECCCccccccCCCccceEECCC-CCEEEEEecCCCCeEEEEE-CCCCEEeE--------
Confidence 9975321 222111 0123458999994 566666653 57899999 87753200
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
+ +. . . .++.+.|.+...+++.+.||.+.++|. +++........ + ..
T Consensus 163 ---~----------i~-~---~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~-----------~-~~- 208 (373)
T 2mad_H 163 ---L----------LS-S---P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG-----------A-ML- 208 (373)
T ss_pred ---E----------cC-C---C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc-----------c-cc-
Confidence 0 00 0 0 124455665567788888999999999 76543221000 0 00
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+... -.....+.+++..++..+..+.+.+.|+...
T Consensus 209 -~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 209 -TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred -cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 00000 1233567777665555557789999998753
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.26 E-value=5.7e-11 Score=126.70 Aligned_cols=223 Identities=7% Similarity=-0.066 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE-------------------EEEeeCCCCCEEEEE
Q 004685 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG 113 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~-------------------v~~sp~~~~~~l~sg 113 (737)
...+.|+|||++|+.++.++.|.+||+.+++..... ..+...... +.|+|+ ++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~ 159 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA 159 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence 334789999999999999999999999988765544 333332222 345666 4544433
Q ss_pred -----ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC------CcEEEEEcCCCCC
Q 004685 114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS 182 (737)
Q Consensus 114 -----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D------g~I~vwdl~~~~~ 182 (737)
..+..|.+||+..+. ...+..+...+..+.|+|.++..|+..+.+ ..|.+||+..+..
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 356789999987532 233335667789999999434544444433 3577888765431
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCcccccCC
Q 004685 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR 257 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----g~i~iwd~~~~~~~~~~~~~ 257 (737)
. .+.. ......+..++|+|++ +.|+.++.+ +.|++||+.+++.....
T Consensus 229 ~-----------------------~l~~-~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--- 280 (396)
T 3c5m_A 229 R-----------------------KIKE-HAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVM--- 280 (396)
T ss_dssp E-----------------------ESSC-CCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEE---
T ss_pred e-----------------------Eeec-cCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEee---
Confidence 1 1111 1112357788999984 655555433 44999999876422110
Q ss_pred CCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEe----------------CCCeEEEEEcCCCCcceeeeec
Q 004685 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV 320 (737)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~----------------~dg~v~iwd~~~~~~~~~~~~~ 320 (737)
. .. ... +.|+| +|++++.++ .+..|++||+.++... .+...
T Consensus 281 --------~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 281 --------V----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp --------E----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred --------e----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 0 00 123 88999 999888765 3478999999886543 22222
Q ss_pred CC-----------CCeeeeeccCCCCccCC
Q 004685 321 GD-----------ASKIMSFTPTLNGLELQ 339 (737)
Q Consensus 321 ~~-----------~~~~~~~~p~~~~~~~~ 339 (737)
.. .....+|+|+.+.+.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCccccccccccCCCCCceEccCCCeEEEE
Confidence 22 14456788876655443
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=4.9e-10 Score=114.45 Aligned_cols=233 Identities=10% Similarity=0.044 Sum_probs=148.5
Q ss_pred ccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685 41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (737)
Q Consensus 41 ~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 119 (737)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+ ..+...+.+++++|+ +.++++...++.|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~i 92 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRRL 92 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCeE
Confidence 44455666667788999999998 7888888999999999887 4555 456778999999998 6887777777899
Q ss_pred EEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeC-----------------CCcEEEEEcCCCC
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDFRQGS 181 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~-----------------Dg~I~vwdl~~~~ 181 (737)
.+||...+.... ...... .....+..++++| +++++++.+. .+.|..++.. ++
T Consensus 93 ~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 93 ERQREPGGEWES-------IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp EEECSTTCCEEE-------EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred EEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 999986532110 000011 1123467899999 5577776321 2344444433 21
Q ss_pred CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC-CCCCcccccCCCCC
Q 004685 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSP 260 (737)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~~~~~~~~ 260 (737)
...+ ..+......++|+|++ +.+++.+.++.|++||+. .+.....
T Consensus 164 -----------------------~~~~---~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~------- 209 (296)
T 3e5z_A 164 -----------------------LSAP---IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ------- 209 (296)
T ss_dssp -----------------------EEEE---ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE-------
T ss_pred -----------------------EEEe---ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC-------
Confidence 0011 1123456889999984 666777888999999987 3321000
Q ss_pred CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee-ccCCCCc
Q 004685 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNGL 336 (737)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~ 336 (737)
...+ ..+ ...+..++++++|+++++. ++.|.+||.. ++.......... +..++| .|+.+.+
T Consensus 210 ---~~~~-------~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 210 ---GVHF-------TVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL 271 (296)
T ss_dssp ---EEEE-------CCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred ---CeEe-------eCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence 0000 001 1135679999999866555 8899999986 444433333334 777888 4654433
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.24 E-value=4.5e-10 Score=129.87 Aligned_cols=234 Identities=10% Similarity=-0.016 Sum_probs=143.9
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc----
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~---- 118 (737)
+|...+.+++|||||++||.+..++ .|++||+.+++.+... . ....+..++|+|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~-~~~~~~~~~wspD--g~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-L-ERVKFSCMAWTHD--GKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-E-EEECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-c-cCcccceEEEEeC--CCEEEEEEECCccccc
Confidence 3445688999999999998765543 8999999999876543 1 2233678999999 788888888766
Q ss_pred ------------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-----CCcEEEEEcCC--
Q 004685 119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ-- 179 (737)
Q Consensus 119 ------------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----Dg~I~vwdl~~-- 179 (737)
|++|++.+..... ..+.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccc
Confidence 9999997643210 0111222345667899999954 55555543 56899999876
Q ss_pred ----CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-C---CcEEEEECCCCCC-
Q 004685 180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D---AFARLYDRRMLPP- 250 (737)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-D---g~i~iwd~~~~~~- 250 (737)
+... ...+. .+...+.. .|+|++ ..|+..+. + +.|.+||+.+...
T Consensus 271 ~~~~~~~~----------~~~l~--------------~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 271 NGITGILK----------WVKLI--------------DNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp SSSCSSCC----------CEEEE--------------CSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred cccCCccc----------eEEee--------------CCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 3210 01111 11122222 477865 45544443 3 3699999876531
Q ss_pred -cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe--EEEEEcCCCCcceeeeecCCCCeee
Q 004685 251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAGGRAMRYTVGDASKIM 327 (737)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~ 327 (737)
...+ ..+ .....+..++|++++.++++...++. |++|++.+++....+......+..+
T Consensus 325 ~~~~l------------------~~~-~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~ 385 (710)
T 2xdw_A 325 KWKVL------------------VPE-HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY 385 (710)
T ss_dssp GCEEE------------------ECC-CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred cceec------------------cCC-CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence 1111 001 11114788999988888888888884 6667775665433333333444556
Q ss_pred eeccCCCCcc
Q 004685 328 SFTPTLNGLE 337 (737)
Q Consensus 328 ~~~p~~~~~~ 337 (737)
+++|+...+.
T Consensus 386 ~~s~d~~~l~ 395 (710)
T 2xdw_A 386 SGQKKDTEIF 395 (710)
T ss_dssp ECCTTCSEEE
T ss_pred ecCCCCCEEE
Confidence 6777655443
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.19 E-value=4.2e-08 Score=99.77 Aligned_cols=201 Identities=8% Similarity=0.028 Sum_probs=134.3
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
......+.+|++.++|.++++...++.|.+||.. ++............+.++++.++ +.++++...++.|..||..
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-
Confidence 3445678999999999988887778999999988 55443221233467899999988 6777777668889999876
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.... ..........+.++++.+ ++.++++...++.|..+|.. ++.. .+.
T Consensus 92 g~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-------------~~~------- 140 (300)
T 2qc5_A 92 GGFT---------EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-------------EYD------- 140 (300)
T ss_dssp SCEE---------EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-------------EEE-------
T ss_pred CCeE---------EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-------------Ecc-------
Confidence 2210 111222345688999998 55777777667889999876 3311 000
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.+.....+.+++++++ ++++++...++.|..||. .++... +.. . .....+..++
T Consensus 141 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------------------~-~~~~~~~~i~ 194 (300)
T 2qc5_A 141 ----LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-YPL------------------P-TNAAAPVGIT 194 (300)
T ss_dssp ----CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EEC------------------S-STTCCEEEEE
T ss_pred ----CCCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-eeC------------------C-CCCCCcceEE
Confidence 1112346788999997 466666666788999988 433211 100 0 0111478899
Q ss_pred EcCCCCEEEEEeCCCeEEEEEc
Q 004685 287 FSPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~ 308 (737)
++++|..+++....+.|.+|+.
T Consensus 195 ~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 195 SGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT
T ss_pred ECCCCCEEEEccCCCEEEEEcC
Confidence 9999986666666778888886
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.18 E-value=9.1e-10 Score=115.15 Aligned_cols=205 Identities=7% Similarity=-0.010 Sum_probs=127.3
Q ss_pred CceEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---------
Q 004685 51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------- 116 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~d---g--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--------- 116 (737)
..+.+++|+|||++||.++.+ + .|.+||+.+++..... . +.. +.+++|+|+ ++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence 468889999999999887654 2 4888899888765544 2 233 999999999 6877777632
Q ss_pred ------------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-------c
Q 004685 117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T 171 (737)
Q Consensus 117 ------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-------~ 171 (737)
..|.+||+..+.. +..+.. . .+..+.|+| ++ +++++..++ .
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------IEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEE----------EEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeE----------EeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence 5688899875321 123333 3 788999999 44 777776542 3
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--------CcEEEE
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY 243 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D--------g~i~iw 243 (737)
..+|.+.+++ ...+.. + ..+.. ++|+ ++.|+.++.+ ..|.+|
T Consensus 200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~--~spd-g~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYA--VDSD-GERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp EEEEEEETTE-----------------------EEEEEE---E-ESEEE--EEEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccEEEeCCCc-----------------------eEEecc---C-cceee--ECCC-CCEEEEEEccccCCccccceEEEE
Confidence 4555444221 111111 1 22333 3887 4666666543 367788
Q ss_pred ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (737)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~ 322 (737)
| +++.. .+. .++ ...+.. +.|+ ++ ++++++.++.+++| +.+++ .........
T Consensus 250 d--~~~~~-~l~-------------------~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~ 302 (347)
T 2gop_A 250 D--GKEVM-GIL-------------------DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRH 302 (347)
T ss_dssp C--SSCEE-ESS-------------------TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSS
T ss_pred C--CCceE-ecc-------------------ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCC
Confidence 7 33211 110 111 124775 8999 88 88899999999999 88543 333333344
Q ss_pred CCeeeeecc
Q 004685 323 ASKIMSFTP 331 (737)
Q Consensus 323 ~~~~~~~~p 331 (737)
.+..++|+|
T Consensus 303 ~v~~~~~s~ 311 (347)
T 2gop_A 303 WIMGFDVDE 311 (347)
T ss_dssp EEEEEEESS
T ss_pred eEEeeeeeC
Confidence 556677776
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.15 E-value=2.2e-09 Score=124.60 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=52.3
Q ss_pred CCCEEEEecCCCcEEEEEcC-cccEEEEeecC-CCceEEEEecCCCCeEE-EE---ecCCcEEEEcCCCCC
Q 004685 638 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA-TS---GIDNTIKIWTPSASV 702 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~-t~~~~~~l~gH-~~~V~~v~~sp~~~~l~-S~---~~Dg~i~lW~~~~~~ 702 (737)
++.++++...|+..+||.++ +|..++.+..+ .+.|..++|+|+++.|+ +. ...++|++||+.+++
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67789999999998888766 57788888764 77899999999987444 33 346799999999887
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.14 E-value=4.3e-09 Score=105.56 Aligned_cols=202 Identities=6% Similarity=-0.015 Sum_probs=138.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
+...+.+|+++++|+++++.. ++.|.+||..+.... .+.......+.++++.|+ +.++++...++.|.+|+.....
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence 335678999999999777666 889999998765433 331233367899999998 6888877778899999754321
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
. ..........+.++++++ +++++++...++.|.+||....... .
T Consensus 141 ~----------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~------------------------~ 185 (270)
T 1rwi_B 141 Q----------TVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV------------------------V 185 (270)
T ss_dssp C----------EECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEE------------------------E
T ss_pred e----------EeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceE------------------------e
Confidence 1 111122334578899999 4577777777889999998765311 0
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
........+.+++++++ +.++++...++.|.+||........ .. ..+ ...+.+++++
T Consensus 186 -~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------------------~~~-~~~p~~i~~~ 242 (270)
T 1rwi_B 186 -LPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV-LP-------------------FTG-LNTPLAVAVD 242 (270)
T ss_dssp -CCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE-CC-------------------CCS-CSCEEEEEEC
T ss_pred -ecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee-ec-------------------cCC-CCCceeEEEC
Confidence 00111245788999997 4777777778999999986532111 00 001 1148899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 289 PNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|+|+.+++...++.|++|++...+
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCEEEEECCCCEEEEEcCCCcc
Confidence 999988888889999999987743
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.13 E-value=1.5e-08 Score=106.73 Aligned_cols=253 Identities=10% Similarity=0.038 Sum_probs=154.0
Q ss_pred ccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc------C
Q 004685 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------H 92 (737)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~------h 92 (737)
++.+++ ..+.+.+.++..-..+ .++|+|||++|+.+. .++.|.+||..+.+.+..+..+ +
T Consensus 48 ~v~v~D--~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEE--CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 556666 3455666777654444 899999999988875 3678999999998887776322 0
Q ss_pred ccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
......++|+|+ +++|+.+.. ++.|.++| ..... +.. +. .. .++.+.|.+...+++.+.|
T Consensus 124 g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~~----------~~~~i~-~~---~~~~~~~~~~~~~~~~~~d 186 (373)
T 2mad_H 124 GPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGSS----------DDQLLS-SP---TCYHIHPGAPSTFYLLCAQ 186 (373)
T ss_pred CCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCCE----------EeEEcC-CC---ceEEEEeCCCceEEEEcCC
Confidence 123458999999 788887764 57899999 75321 222 21 11 1245566566677788889
Q ss_pred CcEEEEEcCCCCCCCCCC-----CCC----------C----------ccceEEEeccCCceeeccCCC----------CC
Q 004685 170 GTLRQHDFRQGSSCPPAG-----SSH----------Q----------ECRNILLDLRCGAKRSLADPP----------KQ 214 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~-----~~~----------~----------~~~~~~~~~~~~~~~~~~~~~----------~~ 214 (737)
|.+.++|. +++...... ... . .....+++...+....+.... ..
T Consensus 187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~ 265 (373)
T 2mad_H 187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence 99999998 654331000 000 0 001111222111111111000 00
Q ss_pred ccceEEEEEecCCCcEEEEEeC----------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
......+.++|++ ..+++... .+.|.++|+.+++.+..+... . ....
T Consensus 266 p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-------------------~---~p~~ 322 (373)
T 2mad_H 266 PGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-------------------H---DVDA 322 (373)
T ss_pred cCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-------------------C---CcCe
Confidence 1223347788875 45555432 357999999988766555321 1 3678
Q ss_pred EEEcCCCC-EEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCee
Q 004685 285 VTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (737)
Q Consensus 285 v~~sp~g~-~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 326 (737)
++|+|||+ .++++. .++.|.+||+.+++........+..+..
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~ 366 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcE
Confidence 99999999 788877 4899999999997765553444443333
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.13 E-value=6.1e-09 Score=104.47 Aligned_cols=219 Identities=6% Similarity=-0.018 Sum_probs=140.1
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
...+|+++++|++++ +...++.|.+||..+..... +...+...+.++++.++ +.++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~-- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN-- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence 678999999999777 54778999999976654332 21233456889999998 67666655 8899999976421
Q ss_pred CCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 131 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
...+. .....+..+++++ ++.++++...++.|.+|+..+.... .
T Consensus 99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~------------------------~- 143 (270)
T 1rwi_B 99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT------------------------V- 143 (270)
T ss_dssp ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE------------------------E-
T ss_pred ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE------------------------e-
Confidence 11121 2235688999999 5577777777889999975443211 0
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
........+.+++++++ ++++++...++.|.+||.......... .... ..+..+++++
T Consensus 144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~ 201 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE 201 (270)
T ss_dssp CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence 00111234678899996 467777777889999998754321110 0010 1478899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
+|..+++...++.|.+|+................+..+++.|+.
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence 99766666678899999987643222111112345566777654
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.12 E-value=7.2e-09 Score=106.46 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=60.0
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEecCCcEEEEcCCCC
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTPSAS 701 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~~Dg~i~lW~~~~~ 701 (737)
++++|+++++...++.|.+||.++++.+..+..+...+.+++|+|+++ ++++...++.|..|++...
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 789999999988899999999999999999988888999999999998 7777777899999998753
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.12 E-value=1.2e-08 Score=105.79 Aligned_cols=240 Identities=11% Similarity=-0.014 Sum_probs=153.7
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc----cceEEEEEe
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFV 102 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~----~~V~~v~~s 102 (737)
.+.|.+++ ..+.+.+.++.. ......|+++++++++++...++.|.+||..+++....+..+.. .....+++
T Consensus 63 ~~~v~viD--~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 63 SHVIFAID--INTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp GTEEEEEE--TTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CCEEEEEE--CcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 46677777 455667677753 45688999999986555555889999999999988877732221 14567777
Q ss_pred eCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----------Cc
Q 004685 103 PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GT 171 (737)
Q Consensus 103 p~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----------g~ 171 (737)
.. +.++++.. .++.|.++|+.+... ...+.. ......++++| ++++++++..+ +.
T Consensus 139 ~~--~~lyv~~~~~~~~v~viD~~t~~~----------~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~ 204 (328)
T 3dsm_A 139 YG--KYVYVNCWSYQNRILKIDTETDKV----------VDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPS 204 (328)
T ss_dssp ET--TEEEEEECTTCCEEEEEETTTTEE----------EEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCE
T ss_pred EC--CEEEEEcCCCCCEEEEEECCCCeE----------EEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCce
Confidence 33 44555544 489999999986321 233322 23456789998 55666666544 78
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
|.++|..+++.. ..+.. +. ......++|+|++ +.++++.. .|.+||..+++..
T Consensus 205 v~~id~~t~~v~----------------------~~~~~-~~-g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 205 LYRIDAETFTVE----------------------KQFKF-KL-GDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEETTTTEEE----------------------EEEEC-CT-TCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCC
T ss_pred EEEEECCCCeEE----------------------EEEec-CC-CCCceeEEEecCC-CEEEEEcc--EEEEEECCCCcee
Confidence 999998876521 00110 00 1256899999974 56666644 8999999876642
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCcceeeeecCCCCee
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-----YSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 326 (737)
... +.. . . ......++++|++..|+++ ..++.|.+||.. ++. ...+..+..+..
T Consensus 258 ~~~------------~~~-----~-~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~-~~~i~~G~~P~~ 316 (328)
T 3dsm_A 258 VRP------------FLE-----F-R-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL-IDEFYVGIIPGA 316 (328)
T ss_dssp SSC------------SBC-----C-C-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE-EEEEEEEESEEE
T ss_pred eee------------eec-----C-C-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE-EEEEEeccCcce
Confidence 110 000 0 0 1247889999954445555 468899999988 554 444456777777
Q ss_pred eeeccC
Q 004685 327 MSFTPT 332 (737)
Q Consensus 327 ~~~~p~ 332 (737)
++|...
T Consensus 317 ~~~~~~ 322 (328)
T 3dsm_A 317 FCWKLE 322 (328)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 777654
No 198
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.11 E-value=4.7e-10 Score=117.38 Aligned_cols=179 Identities=15% Similarity=0.087 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
+++.|++++...++++|+.+ .+++|++.... ....+ .+.. |+.++| + +..|+++ .++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcEE
Confidence 69999999999999999987 56679875433 11122 3556 999999 5 6889888 889999
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
+||+..... ......|...+.++.+.+. + +++++.||.|.+||+..+...
T Consensus 110 v~dv~sl~~----------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~----------------- 159 (388)
T 1xip_A 110 SLDLEELSE----------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK----------------- 159 (388)
T ss_dssp EEESSSTTC----------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE-----------------
T ss_pred EEEchhhhc----------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc-----------------
Confidence 999986431 3345567778888887652 3 778899999999999976521
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC--cccccCCCCCCCCccccccccccCC-CC
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH-GR 277 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 277 (737)
.....|.+++|+|. + ++.|..||.+++|+...... ...+.. |..+..+ +|
T Consensus 160 ------------~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~------------Pp~~~~~~~~ 212 (388)
T 1xip_A 160 ------------QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSL------------PSELEELPVE 212 (388)
T ss_dssp ------------EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEECC------------CHHHHTSCTT
T ss_pred ------------cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceecC------------CcccccccCC
Confidence 02347899999996 3 68899999999998876542 222210 1111111 12
Q ss_pred cccceeEEEEcCCCCEEEEE
Q 004685 278 SSLHLTHVTFSPNGEEVLLS 297 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g 297 (737)
...|.+|.|.+++.++++=
T Consensus 213 -~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 213 -EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -TSEEEEEEESSSSEEEEEE
T ss_pred -CeeEEEEEEecCCeEEEEE
Confidence 2369999999999988763
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.10 E-value=1.7e-08 Score=111.97 Aligned_cols=225 Identities=12% Similarity=0.112 Sum_probs=148.9
Q ss_pred ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEe--
Q 004685 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV-- 102 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~s-- 102 (737)
+++|.++| ..+.+.+.++... ..+..+.|+|||++|++++.|+.|.+||+. +++.+..+. . ......++|+
T Consensus 176 ~~~V~viD--~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-~-G~~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALID--GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-I-GSEARSIETSKM 250 (567)
T ss_dssp TTEEEEEE--TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-C-CSEEEEEEECCS
T ss_pred CCeEEEEE--CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-c-CCCCceeEEccc
Confidence 45666666 4455666666533 356799999999999999999999999996 788888773 3 3346799999
Q ss_pred --eCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc----------CCC-ceeEEEEecCCCcEEEEEeC
Q 004685 103 --PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 103 --p~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~ 168 (737)
|+ |.+++++. .++.|.++|..+.+ ++..+.. |.. .+..+..++.++.+++....
T Consensus 251 ~~pD--Gk~l~v~n~~~~~v~ViD~~t~~----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 251 EGWE--DKYAIAGAYWPPQYVIMDGETLE----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp TTCT--TTEEEEEEEETTEEEEEETTTCC----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred cCCC--CCEEEEEEccCCeEEEEECCCCc----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 68 67666555 56999999977532 2222221 222 67788888877777878888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (737)
Q Consensus 169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~ 248 (737)
+|.|.++|....... .+.. + ........+.|+|++..+++++..++.|.++|+.++
T Consensus 319 ~g~v~~vd~~~~~~~------------~v~~--------i----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 319 TGKILLVDYTDLNNL------------KTTE--------I----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp TTEEEEEETTCSSEE------------EEEE--------E----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCeEEEEecCCCccc------------eeee--------e----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 899999998764311 0110 0 011345678899985334455557899999999988
Q ss_pred CCcccccC-CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE-Ee-CCCeEEEEEcCC
Q 004685 249 PPLTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SY-SGEHVYLMDVNH 310 (737)
Q Consensus 249 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~-g~-~dg~v~iwd~~~ 310 (737)
+.+..+.. .. ..|.+..+. + ++|++..+.+ +. .++.|.++|..+
T Consensus 375 kl~~~i~vgg~----------------~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 375 KLVAIEDTGGQ----------------TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEEECSSS----------------SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cEEEEEeccCc----------------CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 75544321 10 112111132 2 6888555544 43 468999999987
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.06 E-value=7.8e-09 Score=104.16 Aligned_cols=195 Identities=8% Similarity=0.019 Sum_probs=137.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc-cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
.+++|++++.|+.|.+||.++++.+..+ ..+. ..+.++.+.|+ |++|+ +.++.|..||. ++. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G~----------~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DGR----------E 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TSC----------E
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CCC----------E
Confidence 4678999999999999999999999998 4554 57899999999 78888 45788999998 322 2
Q ss_pred ceeeccC-CCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004685 140 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (737)
Q Consensus 140 ~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (737)
+..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. .++. ++...... ....+...
T Consensus 68 ~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~--------------l~~~~~~~-----~~~~~~~~ 126 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEV--------------LSKTEFET-----GIERPHAQ 126 (276)
T ss_dssp EEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCE--------------EEEEEECC-----SCSSGGGS
T ss_pred EEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCE--------------EEEEeccC-----CCCccccc
Confidence 4445443 34688889998 6678877776 677777775 3331 11111000 00011123
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (737)
Q Consensus 218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g 297 (737)
...+++.++ ++++++...++.|.+||.. ++.+.++... ....++.+.++|..++++
T Consensus 127 ~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------------------~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 127 FRQINKNKK-GNYLVPLFATSEVREIAPN-GQLLNSVKLS----------------------GTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp CSCCEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEECS----------------------SCCCEEEECTTSCEEEEC
T ss_pred ccCceECCC-CCEEEEecCCCEEEEECCC-CCEEEEEECC----------------------CCccceeEcCCCCEEEEe
Confidence 344567776 6899999999999999998 7765544211 125567889999999999
Q ss_pred eCCCeEEEEEcCCCCccee
Q 004685 298 YSGEHVYLMDVNHAGGRAM 316 (737)
Q Consensus 298 ~~dg~v~iwd~~~~~~~~~ 316 (737)
..++.|..+|..+++..-.
T Consensus 183 ~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp BTTSEEEEECTTTCCEEEE
T ss_pred CCCCeEEEEeCcCCcEEEE
Confidence 8888999999998765433
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.06 E-value=1.2e-08 Score=102.87 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=155.8
Q ss_pred CCcccccccccccccccccceeecccC-CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685 24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (737)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s 102 (737)
.+.++.|.+++ ..+.+.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+.......+.++.+.
T Consensus 11 ~~~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~ 85 (276)
T 3no2_A 11 GSGWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARIL 85 (276)
T ss_dssp CTTCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEEC
T ss_pred eCCCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEEC
Confidence 45678888888 44667777887765 5789999999999988 34778999999 8899988843334578899999
Q ss_pred eCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeec------cCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 103 PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 103 p~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
|+ |.++++.+. ++.|..+|.. +.. +..+. .+......+++.+ +++++++...++.|..|
T Consensus 86 ~d--G~~lv~~~~~~~~v~~vd~~---Gk~--------l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 86 PD--GNALVAWCGHPSTILEVNMK---GEV--------LSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREI 151 (276)
T ss_dssp TT--SCEEEEEESTTEEEEEECTT---SCE--------EEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred CC--CCEEEEecCCCCEEEEEeCC---CCE--------EEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence 99 799998887 7777777653 211 22211 1222345567777 66899999999999999
Q ss_pred EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (737)
Q Consensus 176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (737)
|.. ++ .+|....+ ....++.+.++ ++++++++.+++|..+|..+++.+.++.
T Consensus 152 d~~-G~--------------~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 152 APN-GQ--------------LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CTT-SC--------------EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCC-CC--------------EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 987 65 23332221 23445677775 5788888888899999999888765553
Q ss_pred CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCCc
Q 004685 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNHAGG 313 (737)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--------g~v~iwd~~~~~~ 313 (737)
.... .+..-..+..++..++|..+++.... +..+++++...+.
T Consensus 204 ~~~~---------------~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~ 254 (276)
T 3no2_A 204 ANDI---------------EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK 254 (276)
T ss_dssp GGGS---------------BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred CCCC---------------CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence 1100 00011137888999999988777421 2446666644333
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.06 E-value=7.5e-08 Score=100.28 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=120.6
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEE
Q 004685 56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR 120 (737)
Q Consensus 56 l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~ 120 (737)
....|+++.++.... ++.|.++|..+++.+..+. ....+ . ++++|+ +.+++.+. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-vG~~P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-CCCCC-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence 445689988887765 6799999999999999884 33344 4 999999 57665554 367899
Q ss_pred EEecCCCCCCCCCCCCCCCceeeccC-------CCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCC
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQ 191 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~ 191 (737)
+||..+... +..+.-. ......++|+|++ ++++++.. ++.|.++|+.+.+.+
T Consensus 113 viD~~t~~v----------~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv-------- 173 (386)
T 3sjl_D 113 VFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFK-------- 173 (386)
T ss_dssp EECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEE--------
T ss_pred EEECCCCeE----------EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEE--------
Confidence 999986332 3333211 1245679999955 65555543 689999999988632
Q ss_pred ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccc
Q 004685 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPM 270 (737)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (737)
..+. .++ +..+.|.+...+++.+.||.+.+.++.. ++...... ..+.+
T Consensus 174 --------------~tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~~~~~- 222 (386)
T 3sjl_D 174 --------------RMLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---------EVFHP- 222 (386)
T ss_dssp --------------EEEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---------CCCSC-
T ss_pred --------------EEEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---------ceecc-
Confidence 0110 000 1122344456777888899999999876 43211000 00000
Q ss_pred cccCCCCcccceeEEEEc-CCCCEEEEEeCCCeEEEEEcCCC
Q 004685 271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 271 ~~~~~~~~~~~i~~v~~s-p~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
....-.....|. ++|++++ .+.+|.|++.|+.+.
T Consensus 223 ------~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 223 ------EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp ------TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred ------ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 000011224664 6886555 555889999998764
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=6e-08 Score=102.89 Aligned_cols=191 Identities=11% Similarity=0.025 Sum_probs=118.8
Q ss_pred CCCCEEEEEeC-C----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEEec
Q 004685 60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (737)
Q Consensus 60 ~~g~~lasgs~-d----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iwd~ 124 (737)
+++++++.... + +.|.++|..+++.+..+.. ...+ .++++|+ ++.|+.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GFLP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CCCC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46776665544 2 6999999999999999843 3345 8999999 56665554 4678999999
Q ss_pred CCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 125 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
.+... +..+.- .......+.|+|+ +++++++.. ++.|.+.|+.+.+.+
T Consensus 157 ~t~~v----------v~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv------------ 213 (426)
T 3c75_H 157 VTFLP----------IADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKTFD------------ 213 (426)
T ss_dssp TTCCE----------EEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred CCCcE----------EEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCeEE------------
Confidence 86432 222221 1133467899995 566666653 578999999987632
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
. .+.. + . +....|.+...+++.+.||.+.+.+..+++...... ..+. .
T Consensus 214 --~--------~I~v-~----g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v 261 (426)
T 3c75_H 214 --R--------MLDV-P----D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T 261 (426)
T ss_dssp --E--------EEEC-C----S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred --E--------EEEc-C----C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence 0 0100 0 0 123344434567777788888888885443221100 0000 0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
+... ....+.|.+++..++..+..+.|.+.|+...
T Consensus 262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 0000 1223578999998888888899999998763
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=4.1e-08 Score=102.48 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=113.2
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEc------ccCccceEEEEEeeCCCCCEEEEEEC-----CC
Q 004685 51 GCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELVVSGAG-----DA 117 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~-----dg 117 (737)
..+..++++++|+++++.. .++.++||.+.+++. ..+. ..+-..+.++++.++ +.++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCCCC
Confidence 6789999999999988864 234355665545543 3221 124467999999998 566665433 57
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeec------cCCCceeEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCCC
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGS 188 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s---~Dg~I~vwdl~~~~~~~~~~~ 188 (737)
.|.+||+.+... +..+. .+...+..++++++++..+++.. .++.|.+||+.+++..
T Consensus 94 ~i~~~d~~tg~~----------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~----- 158 (343)
T 2qe8_A 94 KLVAWDTLNNQL----------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA----- 158 (343)
T ss_dssp EEEEEETTTTEE----------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-----
T ss_pred eEEEEECCCCeE----------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-----
Confidence 899999875321 11111 22345689999985556666665 6789999999876521
Q ss_pred CCCccceEEEeccCCceeeccCCCCCccc-eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685 189 SHQECRNILLDLRCGAKRSLADPPKQTLS-LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
.+. ..|... .....+.++ +..+.+.+.++.++.|..
T Consensus 159 ------------------r~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~g~~~~~~~---------------------- 195 (343)
T 2qe8_A 159 ------------------RVL--QGYPGIAPEDIDLVID-GVPVQIGQPDGTVIRPHL---------------------- 195 (343)
T ss_dssp ------------------EEC--TTCTTTSCCSCCCEET-TEECBEECTTSCEECCCC----------------------
T ss_pred ------------------EEe--cCCCcccccccceeEC-CEEEEeccCCCceeceec----------------------
Confidence 000 000000 000223333 456666777777765531
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCCC-eEEEEE
Q 004685 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMD 307 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg-~v~iwd 307 (737)
.+..++|+|+|++|+.+...+ .++.++
T Consensus 196 -------------~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 196 -------------GVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp -------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred -------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 267899999999998887765 444433
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.99 E-value=3.3e-07 Score=93.37 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEec-CCCC-eEEEEec
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH-PFDC-VVATSGI 689 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~s-p~~~-~l~S~~~ 689 (737)
++++|++.++....+.|.+||.++|+++..+..+...+++++|. |+++ +++|...
T Consensus 206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 78999999988888999999999999999999998899999999 8876 5555554
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.99 E-value=5.7e-08 Score=99.68 Aligned_cols=234 Identities=8% Similarity=0.035 Sum_probs=141.4
Q ss_pred cccCCceEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEc---ccCccceEEEEEeeCCCCCEEEEEECC
Q 004685 47 EGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 47 ~~H~~~V~~l~~s~~g~~las-------gs~dg~V~vwd~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
.+.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.+++++++. ..|..+...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--g~l~v~~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVADMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEEETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC--CcEEEEECC
Confidence 333446689999999998888 5778899999988877543221 1245678999999872 344444445
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCc-eee--ccCCCceeEEEEecCCCcEEEEEeCC---------------CcEEEEEcC
Q 004685 117 AEVRLFNLSRFSGRGLDDNAITPS-ALY--QCHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDFR 178 (737)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~-~~~--~~h~~~v~~l~~~p~~~~~l~s~s~D---------------g~I~vwdl~ 178 (737)
+.|.+||.. ..... + ... ......+.++++++ +++++++...+ +.|..||..
T Consensus 92 ~~l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEE--------IAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp TEEEEEETT-SCEEE--------CCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred CCEEEEeCC-CCEEE--------EEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 578889876 32110 0 000 01224578999999 55777666554 456666543
Q ss_pred CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe----cCCCcEEEEEeCCCcEEEEECC-CCCCccc
Q 004685 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDAFARLYDRR-MLPPLTS 253 (737)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~ 253 (737)
++.. .+. ........++|+ |++..++++...++.|.+||+. .+.....
T Consensus 162 -g~~~------------~~~--------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 162 -GQMI------------QVD--------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp -SCEE------------EEE--------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred -CCEE------------Eec--------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 2200 000 011245788999 8742344555678999999976 2221000
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (737)
..+ ..+ .++....+..++++++|.++++...++.|.+||..+++...........+..++|+|+.
T Consensus 215 -----------~~~--~~~--~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 215 -----------KVW--GHI--PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp -----------EEE--EEC--CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred -----------eEE--EEC--CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence 000 000 01110137789999999988888788999999988665444443344566777887765
Q ss_pred C
Q 004685 334 N 334 (737)
Q Consensus 334 ~ 334 (737)
+
T Consensus 280 ~ 280 (314)
T 1pjx_A 280 K 280 (314)
T ss_dssp S
T ss_pred C
Confidence 4
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.96 E-value=2.2e-07 Score=96.77 Aligned_cols=262 Identities=11% Similarity=0.079 Sum_probs=157.9
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEcccC-----
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH----- 92 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~h----- 92 (737)
+++.+.| ..+.+.+.++..-..+ . ++++|||++|+.+. .++.|.+||..+++.+..+..+.
T Consensus 59 ~~V~ViD--~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 59 TQQFVID--GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp EEEEEEE--TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CEEEEEE--CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 4566666 4566677777654555 4 99999999887665 36789999999999888873221
Q ss_pred -ccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 93 -SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 93 -~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
......++|+|+ |.+++.+.. ++.|.++|+.+..- +..+.- .+ |..+.|.+.+.+++.+.|
T Consensus 135 ~g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~~v----------v~tI~v-~g---~~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 135 VGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDV-PD---CYHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp BSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred cCCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCCcE----------EEEEEC-CC---cceeecCCCceeEEECCC
Confidence 124567999999 688777764 68999999986321 333321 11 122234355666677888
Q ss_pred CcEEEEEcCC-CCCC---CCCC-------CCCC----ccceEEEeccCCceeeccCCCC--------------------C
Q 004685 170 GTLRQHDFRQ-GSSC---PPAG-------SSHQ----ECRNILLDLRCGAKRSLADPPK--------------------Q 214 (737)
Q Consensus 170 g~I~vwdl~~-~~~~---~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------~ 214 (737)
|++.+.++.. ++.. .... ..+. .....+|....+.+..+..... .
T Consensus 199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 8888888875 3321 0000 0000 0112222222222211111000 0
Q ss_pred ccceEEEEEecCCCcEEEEEeC---------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685 215 TLSLKSCDISSTRPHLLLVGGS---------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (737)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~t~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 285 (737)
......++++++...++++-.. .+.|.++|+.+++.+..+.. +..+..|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~l 336 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSI 336 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceE
Confidence 1123347778875444443321 25799999999887665531 1147889
Q ss_pred EEcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685 286 TFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (737)
Q Consensus 286 ~~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (737)
+++||++ +|+++.. ++.|.++|..+++...... .....+.+.++++
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~-~~~~p~~l~~s~d 384 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTAD 384 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEEECC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec-CCCCCceeEECCc
Confidence 9999997 7777655 8999999999976544444 3444455566654
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.94 E-value=3.6e-07 Score=92.68 Aligned_cols=199 Identities=6% Similarity=0.002 Sum_probs=134.9
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
+...+.+|+++++|.++++...++.|..||.. ++. ..+. ......+.++++.++ +.++++...++.|..||.. .
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g 129 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-G 129 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-C
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-C
Confidence 45679999999999988887778899999986 332 2221 234567899999998 6888877778899999873 2
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
... ..........+..+++++ ++.++++...++.|..||. +++.. .
T Consensus 130 ~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~-----------------------~ 175 (299)
T 2z2n_A 130 KIR---------EYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDIT-----------------------E 175 (299)
T ss_dssp CEE---------EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-----------------------E
T ss_pred CEE---------EecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEE-----------------------E
Confidence 110 111222345688999998 4577777767789999998 44311 0
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
+ ..+.....+.+++++++ +.++++...++.|.+||. ++... .+.. ... ...+.++++
T Consensus 176 ~-~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~~------------------~~~-~~~~~~i~~ 232 (299)
T 2z2n_A 176 F-KIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEIT-EFKI------------------PTP-NARPHAITA 232 (299)
T ss_dssp E-ECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EEEC------------------SST-TCCEEEEEE
T ss_pred e-eCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEE-EEEC------------------CCC-CCCceeEEE
Confidence 0 01112345778999997 567766667889999998 54321 1100 001 114889999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC
Q 004685 288 SPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+++|..+++...++.|.+||..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEeccCCceEEEECCC
Confidence 9999966665578899999983
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.93 E-value=1.7e-07 Score=100.07 Aligned_cols=217 Identities=8% Similarity=0.007 Sum_probs=137.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCC
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS 128 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~ 128 (737)
.....|+|+++++++++...++.|++||..++...... ... .... ++|+|+ +..|+++..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence 36789999999998888888899999999988766554 332 2333 999999 68888887765 78888876421
Q ss_pred CCCCCCCCCCCceee---cc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685 129 GRGLDDNAITPSALY---QC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
. ...+ .. ....+.+++++|+++.+++ +..++.|..||...+... .+....
T Consensus 206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~--- 259 (409)
T 3hrp_A 206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLE--- 259 (409)
T ss_dssp C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECC---
T ss_pred e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEeccc---
Confidence 1 1122 12 4456788999996555554 677889999998765411 110000
Q ss_pred eeeccCCCCCccc--eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685 205 KRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 205 ~~~~~~~~~~~~~--v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
....... ...++|+|+++.++++-..++.|+.|+.... +..+....... .+... .... ..-...
T Consensus 260 ------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~----g~~dg-~~~~-~~~~~P 325 (409)
T 3hrp_A 260 ------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK----TVQDG-LREE-ALFAQP 325 (409)
T ss_dssp ------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC----SCBCE-EGGG-CBCSSE
T ss_pred ------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC----CcCCC-cccc-cEeCCC
Confidence 0001111 1289999965677777778899999987643 21111110000 00000 0000 001137
Q ss_pred eEEEEcCCCCEEEEEe-CCCeEEEEEcCCCC
Q 004685 283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHAG 312 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~ 312 (737)
..++++|+|.++++-. .++.|+.|++.++.
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 7899999999777777 78999999987654
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=4e-07 Score=97.23 Aligned_cols=164 Identities=14% Similarity=0.079 Sum_probs=98.0
Q ss_pred cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--c
Q 004685 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T 171 (737)
Q Consensus 94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~ 171 (737)
.....|+|+++ +.++++...++.|++||..... +..+........ ++|++ +++.|+++..++ .
T Consensus 131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHT 195 (409)
T ss_dssp CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCE
T ss_pred CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEec-CCCcEEEEecCCCce
Confidence 35789999998 6777777778999999987532 222222233344 99999 456777777765 7
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
|.+|+....... ..+-. + .......+.+++++|+++. |+++..++.|+.||......
T Consensus 196 I~~~d~~~~~~~-----------~~~g~--------~--~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~- 252 (409)
T 3hrp_A 196 VYVYMKASGWAP-----------TRIGQ--------L--GSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV- 252 (409)
T ss_dssp EEEEEGGGTTCE-----------EEEEE--------C--CTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-
T ss_pred EEEEEcCCCcee-----------EEeee--------c--cchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-
Confidence 888887654311 00000 0 0112345678899996554 44477788999999986541
Q ss_pred ccccCCCCCCCCccccccccccCCCCccc-ceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~ 310 (737)
..+... .. .+.... +...++|+|++..|+.+ ..++.|+.|+...
T Consensus 253 ~~~~~~-------------~~--~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 253 TLIKQL-------------EL--SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp EEEEEC-------------CC--CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred EEEecc-------------cc--cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 111000 00 011110 12389999964445544 5578899998654
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.92 E-value=5.6e-08 Score=103.12 Aligned_cols=256 Identities=11% Similarity=0.075 Sum_probs=154.9
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc------
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------ 91 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~------ 91 (737)
+.|.+.| ..+.+.+.++.--..+ .|+++|||++|+.+. .++.|.++|..+++.+..+..+
T Consensus 99 ~~VsVID--~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVID--GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEE--CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 6777777 5566777777644455 899999999887775 4678999999999988877322
Q ss_pred CccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 92 h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
.......++|+|+ +.+++.+.. ++.|.+.|+.+... +..+.- .. +....|.+...+++.+.|
T Consensus 175 ~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~kv----------v~~I~v-~g---~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 175 VGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKTF----------DRMLDV-PD---CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp BSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred cCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCeE----------EEEEEc-CC---ceeeccCCCcEEEEEcCC
Confidence 1234567899999 788887764 58899999986321 223221 11 123334344556666677
Q ss_pred CcEEEEEcCCCCCCC------CCCC------C--CCccc----------eEEEeccCCceeeccCCC-----C-----Cc
Q 004685 170 GTLRQHDFRQGSSCP------PAGS------S--HQECR----------NILLDLRCGAKRSLADPP-----K-----QT 215 (737)
Q Consensus 170 g~I~vwdl~~~~~~~------~~~~------~--~~~~~----------~~~~~~~~~~~~~~~~~~-----~-----~~ 215 (737)
|.+.+.++..++... .... . ..... ..+++...+....+.... . ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 777777774332210 0000 0 01111 122222221111111000 0 01
Q ss_pred cceEEEEEecCCCcEEEEEe---------CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685 216 LSLKSCDISSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s---------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
.....++++|++..++++.. .++.|.++|+.+.+.+..+... .....++
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----------------------~~P~gia 376 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----------------------HEIDSIN 376 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----------------------EEECEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----------------------CCcCeEE
Confidence 11223689998544444432 1357999999998876665311 1377899
Q ss_pred EcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCe
Q 004685 287 FSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASK 325 (737)
Q Consensus 287 ~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~ 325 (737)
|+|||+ +++++.. ++.|.++|+.+.+........+....
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ 417 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc
Confidence 999999 8888884 89999999999876555434444444
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.89 E-value=3.6e-07 Score=93.08 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=143.5
Q ss_pred ecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685 46 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
+..+..-..+..|+++ +.++++...++.|..||..+++.. .+ .....+.+++++|+ +.++++ . +..|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEEEEC
Confidence 3334445668899995 556777778899999999887653 33 24567999999999 675554 4 567999998
Q ss_pred CCCCCCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCC---------CcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 125 SRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~D---------g~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
...... .+.... .....+..++++| +++++++...+ ....+|.+......
T Consensus 81 ~~g~~~--------~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---------- 141 (297)
T 3g4e_A 81 KEQSAV--------VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---------- 141 (297)
T ss_dssp TTTEEE--------EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE----------
T ss_pred CCCcEE--------EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE----------
Confidence 753211 111111 1124578899999 45666544221 23345544432110
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCcccccCCCCCCCCcccccccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMH 271 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (737)
..+. ......+.++|+|++..++++.+.++.|.+||+. ++..... +.+. .
T Consensus 142 -~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----------~~~~--~ 193 (297)
T 3g4e_A 142 -KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----------RSVY--K 193 (297)
T ss_dssp -EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----------EEEE--E
T ss_pred -EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----------EEEE--E
Confidence 0000 0123457899999854455666778999999974 3321000 0000 0
Q ss_pred ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCCCc
Q 004685 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL 336 (737)
Q Consensus 272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 336 (737)
+ .........++++++|.+.++....+.|.+||..+++...........+..++|. |+.+.+
T Consensus 194 ~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 194 L---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp C---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred C---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence 0 0011146789999999887777778899999999877655555555677888997 765544
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.84 E-value=1.4e-06 Score=88.34 Aligned_cols=201 Identities=6% Similarity=-0.033 Sum_probs=133.9
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
.+...+.+|++.+++.++++...++.|.+||.. ++............+.++++.++ +.++++...++.|..|+.. .
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-C
Confidence 344678999999999988877778899999988 55432221224467899999988 6888877768889999876 2
Q ss_pred CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
... ...+......+.++++.+ +++++++...++.|..+|. .++.. .+.
T Consensus 135 ~~~---------~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~-------- 182 (300)
T 2qc5_A 135 TIY---------EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP-------- 182 (300)
T ss_dssp CEE---------EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE--------
T ss_pred CEE---------EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee--------
Confidence 210 111222345688999998 4567766666788999987 33311 000
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
.+.....+.+++++++ ++++++....+.|.+||. ++.... +. . ... ...+.++++
T Consensus 183 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~----------------~--~~~-~~~~~~i~~ 237 (300)
T 2qc5_A 183 ---LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-YD----------------I--PTP-NARPHAITA 237 (300)
T ss_dssp ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EE----------------C--SST-TCCEEEEEE
T ss_pred ---CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-EE----------------C--CCC-CCCceEEEE
Confidence 1122346788999986 567776666778999998 332111 10 0 001 114789999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC
Q 004685 288 SPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+++|...++...++.|..||..
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCEEEeccCCCeEEEECCC
Confidence 9999966666667899999983
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.1e-07 Score=99.29 Aligned_cols=257 Identities=9% Similarity=-0.002 Sum_probs=150.9
Q ss_pred ccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc-C-----
Q 004685 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-H----- 92 (737)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~-h----- 92 (737)
++.+.| ..+.+.+.++.--..+ .+.++||+++++.+. .++.|.+||..+++.+..+..+ .
T Consensus 47 ~vsvID--~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSC--AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEE--TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEE--CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 555666 5667777888755556 799999999888875 3688999999999999888322 0
Q ss_pred ccceEEEEEeeCCCCCEEEEEEC--CCcEEE--EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685 93 SANVFCTKFVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~--dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
......++++|+ |.+++.+.. +..|.+ +|..+ +..+.. ... +.+.|++...+++.+.
T Consensus 123 g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 123 GPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp SCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCC
T ss_pred CCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcC
Confidence 134678999999 677777764 467888 88864 111110 010 1223444456666777
Q ss_pred CCcEEEEEcCC-----CCCCC----CCCCC-----CCc---------cceEEEeccCCceeeccCCCC----------Cc
Q 004685 169 DGTLRQHDFRQ-----GSSCP----PAGSS-----HQE---------CRNILLDLRCGAKRSLADPPK----------QT 215 (737)
Q Consensus 169 Dg~I~vwdl~~-----~~~~~----~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~----------~~ 215 (737)
|+.+.+.|+.. ++... ....+ ... .....++........+..... ..
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 88888888776 22110 00000 000 111122221111111110000 00
Q ss_pred cceEEEEEecCCCcEEEEEe---C-----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 216 LSLKSCDISSTRPHLLLVGG---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 216 ~~v~~i~~sp~~~~~l~t~s---~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
.....++|+|++..++++.. . ++.+.++|+.+.+.+..+.. +.....++|
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~ 321 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIA 321 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEE
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEE
Confidence 11122689998544444333 2 23566999999876655431 113778999
Q ss_pred cCCCCE-EEEEe-CCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685 288 SPNGEE-VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (737)
Q Consensus 288 sp~g~~-l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (737)
+|||++ +++.. .++.|.++|+.+.+.. .....+.....+++.+
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv-~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQ-SSVELDKGPESLSVQN 366 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEE-EECCCCSCCCEEECCC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEE-EEEECCCCCCEEEeec
Confidence 999985 55555 4899999999996543 4444555555666554
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.82 E-value=2.6e-08 Score=104.13 Aligned_cols=176 Identities=9% Similarity=-0.017 Sum_probs=116.8
Q ss_pred ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
.+..+++++. ..++++|+.++ +++|++........ .....++.. ...+.. |+.++| ++.+|+++ .++.|+
T Consensus 39 ~~nlLais~~--~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNS--KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETT--TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEE
T ss_pred cccEEEEcCC--CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEE
Confidence 6899999999 68899999885 55698764320000 000012222 224666 999999 44788787 889999
Q ss_pred EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (737)
Q Consensus 174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (737)
+||+++.... ... +.+...+.++.+.+ ++ ++++..||.|.+||+..++...
T Consensus 110 v~dv~sl~~~-----------~~~--------------~~~~~~v~~i~~~~--p~-~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 110 SLDLEELSEF-----------RTV--------------TSFEKPVFQLKNVN--NT-LVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp EEESSSTTCE-----------EEE--------------EECSSCEEEEEECS--SE-EEEEETTSEEEEEETTTCCEEE-
T ss_pred EEEchhhhcc-----------Ccc--------------ceeecceeeEEecC--CC-EEEEECCCCEEEEEccCCcccc-
Confidence 9999876521 001 11233466666665 33 8889999999999998765321
Q ss_pred ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--ceee------e---ecCC
Q 004685 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMR------Y---TVGD 322 (737)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~--~~~~------~---~~~~ 322 (737)
....|++++|||+| ++.|..||.+++|+...... ...+ . .+..
T Consensus 161 ------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~ 214 (388)
T 1xip_A 161 ------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY 214 (388)
T ss_dssp ------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS
T ss_pred ------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe
Confidence 11159999999999 78899999999998887553 2222 1 1345
Q ss_pred CCeeeeeccCCC
Q 004685 323 ASKIMSFTPTLN 334 (737)
Q Consensus 323 ~~~~~~~~p~~~ 334 (737)
.+..++|.++..
T Consensus 215 ~V~sI~wl~~~~ 226 (388)
T 1xip_A 215 SPLSVTILSPQD 226 (388)
T ss_dssp EEEEEEESSSSE
T ss_pred eEEEEEEecCCe
Confidence 566677877543
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.81 E-value=8.5e-08 Score=110.24 Aligned_cols=233 Identities=14% Similarity=0.059 Sum_probs=133.8
Q ss_pred ccCCceEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc----
Q 004685 48 GHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~las-----gs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~---- 118 (737)
+|...+..++|||||++||- |+....|++||+.+++.+... .+......++|+ + ++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-D--g~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-G--NEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-C--CCEEEEEEecCccccc
Confidence 45567889999999998884 333467999999999865432 112223578899 8 688888877743
Q ss_pred ---------EEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCC
Q 004685 119 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPP 185 (737)
Q Consensus 119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~D---g~I~vwdl~~~~~~~~ 185 (737)
|++|++.+..... ..+..... |......+.|+|++..++++.+.+ ..|.++|+.++...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-- 272 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-- 272 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence 9999987643211 11222233 445578899999654444554432 47899998765311
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCC
Q 004685 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP 262 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~ 262 (737)
... +.. +....... |+++++.+++....+ +.|..+|+.+.....
T Consensus 273 --------~~~-----------l~~---~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~---------- 319 (693)
T 3iuj_A 273 --------LLT-----------VQG---DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH---------- 319 (693)
T ss_dssp --------CEE-----------EEC---SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG----------
T ss_pred --------eEE-----------EeC---CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc----------
Confidence 011 111 11222222 556555566665544 678899988653200
Q ss_pred CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCcc
Q 004685 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (737)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 337 (737)
...+ .. +.. .+. .|++++++|+....+ + .|++|++..+............+..+.++|+...+.
T Consensus 320 -~~~l-----~~--~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 320 -WRDL-----IP--ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp -CEEE-----EC--CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEE
T ss_pred -cEEE-----ec--CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEE
Confidence 0000 11 111 133 899999988887764 3 688998875332222122222233445555554443
No 217
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.80 E-value=1.3e-07 Score=109.75 Aligned_cols=231 Identities=11% Similarity=-0.008 Sum_probs=131.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc-----
Q 004685 49 HQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----- 118 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~----- 118 (737)
|...+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCcccccc
Confidence 44478899999999999877543 46999999999875432 12233467899998 45666555543
Q ss_pred ---------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCC
Q 004685 119 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCP 184 (737)
Q Consensus 119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~~~~ 184 (737)
|++|++.+..... ..+.....+...+..+.|+| ++++|+..+.+ ..|.+||+.++...
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~- 307 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG- 307 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC-
T ss_pred cccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc-
Confidence 8889886532110 01122223334588999999 45666555543 37899998765200
Q ss_pred CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC----CCcEEEEECCCCC-CcccccCCCC
Q 004685 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLP-PLTSCQKRMS 259 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~-~~~~~~~~~~ 259 (737)
+...+. . +....... ++|++ +.|+..+. ++.|.+||+.+.. ....+.
T Consensus 308 --------~~~~l~-----------~---~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~---- 359 (741)
T 1yr2_A 308 --------PVTALI-----------P---DLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV---- 359 (741)
T ss_dssp --------CCEEEE-----------C---SSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE----
T ss_pred --------ccEEec-----------C---CCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe----
Confidence 001111 0 11122223 34654 56665554 3459999987632 111110
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCcceeeee-cCCCCeeeeeccCCCCcc
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYT-VGDASKIMSFTPTLNGLE 337 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~-~~~~~~~~~~~p~~~~~~ 337 (737)
. +....+..++|+ ++.++++...|+..++|.+. +++....+.. ....+..++++|+.+.+.
T Consensus 360 ---------------~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 360 ---------------P-ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp ---------------C-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred ---------------c-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 0 111136677887 56677777889887777665 3332222221 233455677777665554
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.78 E-value=1.5e-06 Score=89.76 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=132.0
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 52 CVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
-..+..|+|++ .+++++..++.|.+||..+++.. .+ . ....+.+++|+|+ +.++++. .+ .|.+||.......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~-~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-A-LPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-E-CSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-E-CCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCcEE
Confidence 45678899974 56677777899999999887643 33 1 3467999999998 6666654 44 4899998653211
Q ss_pred CCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 131 GLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 131 ~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
.+.... .....+.+++++| +++++++... .+.|..++ .++. ..+.
T Consensus 123 --------~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~---- 175 (326)
T 2ghs_A 123 --------LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF---- 175 (326)
T ss_dssp --------EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE----
T ss_pred --------EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee----
Confidence 011111 1124588999999 4466554432 13444444 2220 0000
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC--CC-CCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
........++|+|++..++++.+.++.|.+||+. ++ ..... ..+. .+ ... .
T Consensus 176 ----------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~-----------~~~~--~~--~~~-~ 229 (326)
T 2ghs_A 176 ----------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA-----------EVFI--DS--TGI-K 229 (326)
T ss_dssp ----------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC-----------EEEE--EC--TTS-S
T ss_pred ----------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc-----------eEEE--EC--CCC-C
Confidence 0112357899999853344555667899999986 43 21100 0000 00 001 1
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCCC
Q 004685 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNG 335 (737)
Q Consensus 280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~ 335 (737)
.....++++++|.++++...++.|.+||. +++...........+..++|. |+...
T Consensus 230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence 13678999999987777777789999998 444433333334456778887 65443
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=4.4e-07 Score=94.60 Aligned_cols=79 Identities=8% Similarity=-0.047 Sum_probs=65.3
Q ss_pred ccCCCCEEEEecC---------CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEe-cCCcEEEEcCCCCCC
Q 004685 635 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP 703 (737)
Q Consensus 635 ~s~d~~~l~sgs~---------D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~-~Dg~i~lW~~~~~~~ 703 (737)
+++|++.++.+.. +..+.|+|+.+++.+.++.... ...+++|+||++ ++++.. .+++|.++|+.+.+.
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 7899887765432 2345599999999999997655 689999999997 678887 699999999999999
Q ss_pred ccccCCCCCCC
Q 004685 704 SIVSGGAAGPD 714 (737)
Q Consensus 704 ~~~~~~~~~~~ 714 (737)
+.++..+.+|.
T Consensus 350 v~~I~vg~~P~ 360 (368)
T 1mda_H 350 QSSVELDKGPE 360 (368)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEECCCCCC
Confidence 99998777764
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.70 E-value=1.1e-06 Score=101.07 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=49.9
Q ss_pred ccCCCCEEEEecCCC---cEEEEEcCcccEEEEee-cCCCceEEEEecCCCCeEEEEecC----CcEEEEcCCCCCC
Q 004685 635 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP 703 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~---~i~iWd~~t~~~~~~l~-gH~~~V~~v~~sp~~~~l~S~~~D----g~i~lW~~~~~~~ 703 (737)
+++++++|+....++ .|++||++.+. .+.+. .+.+.|..+.++|+++.|+-...+ ++|..||+.+++.
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788898877766544 78999998554 45554 456678889999998755444444 7899999988764
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.66 E-value=4.7e-06 Score=85.11 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=100.5
Q ss_pred cCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685 91 GHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 169 (737)
..........|+|+ ++ ++++...++.|..|+... . ...+..+...+..+++++ +++++++...+
T Consensus 42 ~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~g-~-----------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~ 106 (305)
T 3dr2_A 42 DQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWREDG-T-----------VDVLLDATAFTNGNAVDA-QQRLVHCEHGR 106 (305)
T ss_dssp CCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEETTS-C-----------EEEEEESCSCEEEEEECT-TSCEEEEETTT
T ss_pred cCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeCCC-C-----------EEEEeCCCCccceeeECC-CCCEEEEECCC
Confidence 34556778999999 56 677777889999998742 1 334445667789999999 55766655556
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE----EeC---------
Q 004685 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GGS--------- 236 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t----~s~--------- 236 (737)
+.|..|+.. ++. ..+.....+ .....+..++++|+ ++++++ |..
T Consensus 107 ~~v~~~~~~-g~~------------~~~~~~~~~---------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 107 RAITRSDAD-GQA------------HLLVGRYAG---------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp TEEEEECTT-SCE------------EEEECEETT---------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCC
T ss_pred CEEEEECCC-CCE------------EEEEeccCC---------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccc
Confidence 789999875 321 111110000 01134567899997 567765 332
Q ss_pred ----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC------CeEEEE
Q 004685 237 ----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLM 306 (737)
Q Consensus 237 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d------g~v~iw 306 (737)
.+.|..||..+++..... . ......++|+|+++.|+.+... +.|++|
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~----------------~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA----------------D-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE----------------E-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred cccCCCeEEEEcCCCCcEEEEe----------------c-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 245777776554321100 0 0126779999999988888765 678888
Q ss_pred EcCC
Q 004685 307 DVNH 310 (737)
Q Consensus 307 d~~~ 310 (737)
++..
T Consensus 221 ~~~~ 224 (305)
T 3dr2_A 221 AWRD 224 (305)
T ss_dssp EEET
T ss_pred EecC
Confidence 8765
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.64 E-value=8.7e-09 Score=108.70 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=102.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
++.++++++.|+.|..||..+|+.+..+ .. ..+.+..+..+ +.++++++.|+.|+.||..+++..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~---------- 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-KE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGL---------- 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE-EC--CCSCCCC-------CCEEECTTTCCEEEC-----CCS----------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-cC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCcee----------
Confidence 5788999999999999999999999888 33 45555555665 567888889999999999764331
Q ss_pred eeeccCCC-cee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce
Q 004685 141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (737)
Q Consensus 141 ~~~~~h~~-~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (737)
..+..+.. .+. +..+. .+..+++++.|+.|..||..+++.. |....+ .
T Consensus 73 w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~--- 122 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F--- 122 (369)
T ss_dssp EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred eeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence 11211110 000 00111 2245677888999999999988743 111100 0
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC---CEEE
Q 004685 219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL 295 (737)
Q Consensus 219 ~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g---~~l~ 295 (737)
...++|. +..+++++.|+.|+.||.++++.+..+... .....+++++. ..++
T Consensus 123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence 1234454 468888999999999999988754433100 01112233332 4578
Q ss_pred EEeCCCeEEEEEcCCCCc
Q 004685 296 LSYSGEHVYLMDVNHAGG 313 (737)
Q Consensus 296 ~g~~dg~v~iwd~~~~~~ 313 (737)
+++.||.|+.||..+++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEETSCEEEEECTTTCCE
T ss_pred EECCCCEEEEEECCCCcE
Confidence 889999999999998764
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=6e-06 Score=94.29 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=43.4
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEe
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG 688 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~ 688 (737)
++..+.+|+.|+.|+++++||.+||+++-.++...+. ..-+.|+.+|+ |++..+
T Consensus 482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 5667889999999999999999999999999865433 35577889997 655543
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.60 E-value=1.5e-06 Score=88.89 Aligned_cols=230 Identities=10% Similarity=0.030 Sum_probs=136.3
Q ss_pred cceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685 42 QERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (737)
Q Consensus 42 ~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 120 (737)
.+..+..+.....+..|+|+++ +++++..++.|..|+.. ++ ...+ ..+...+.++++.++ +.++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEEE
Confidence 3444555556678899999998 67788888999999984 44 3344 345667899999998 67666655568899
Q ss_pred EEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEE----EeC-------------CCcEEEEEcCCCCC
Q 004685 121 LFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQGSS 182 (737)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s----~s~-------------Dg~I~vwdl~~~~~ 182 (737)
+|+.. +.... ......+ ....+..+++++ ++.++++ |.. .+.|..||..+++.
T Consensus 111 ~~~~~-g~~~~-------~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~ 181 (305)
T 3dr2_A 111 RSDAD-GQAHL-------LVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL 181 (305)
T ss_dssp EECTT-SCEEE-------EECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred EECCC-CCEEE-------EEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence 99875 21100 0001111 123467799998 5577765 322 23455666544431
Q ss_pred CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCcccccC
Q 004685 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQK 256 (737)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D------g~i~iwd~~~~~~~~~~~~ 256 (737)
. .+. .......++|+|+ ++.|+++... +.|++||+.... +...
T Consensus 182 ~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-- 230 (305)
T 3dr2_A 182 Q-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-- 230 (305)
T ss_dssp E-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEEE--
T ss_pred E-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC--
Confidence 1 111 1234578999998 4666666554 789999987532 1100
Q ss_pred CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (737)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 335 (737)
..+.. . . ......++++++|+ |.+++.+ .|.+|+.. ++... .+.....+..++|.|+.+.
T Consensus 231 --------~~~~~-----~-~-~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~-g~~~~-~~~~~~~~~~~~f~~d~~~ 290 (305)
T 3dr2_A 231 --------RHFAS-----V-P-DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD-GQLLG-HIPTPGTASNCTFDQAQQR 290 (305)
T ss_dssp --------EEEEC-----C-S-SSCCCSEEECTTSC-EEECCSS-EEEEECTT-SCEEE-EEECSSCCCEEEECTTSCE
T ss_pred --------eEEEE-----C-C-CCCCCeEEECCCCC-EEEecCC-cEEEECCC-CCEEE-EEECCCceeEEEEeCCCCE
Confidence 00000 0 0 01245689999999 4455544 59999984 34333 3333335677888865543
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=9.5e-06 Score=83.71 Aligned_cols=193 Identities=11% Similarity=0.113 Sum_probs=117.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc---CccceEEEEEeeCCCCCEEEEEECC----CcEEEE
Q 004685 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAGD----AEVRLF 122 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iw 122 (737)
...|.+++|+++|+++++. . ..|.+||..+++........ ....+.+++++|+ |.++++...+ +...||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence 4579999999999877765 4 35999999887754322111 1246889999998 6776655421 233444
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC--CC-CCCCCCCCCCCccceEEEe
Q 004685 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD 199 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~--~~-~~~~~~~~~~~~~~~~~~~ 199 (737)
.+.. +. ...+..+......++|+|++..++++.+.++.|.+||+. ++ ... ....+..
T Consensus 165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~ 224 (326)
T 2ghs_A 165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID 224 (326)
T ss_dssp EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence 4432 21 222222334567899999554455566667899999986 33 211 0111111
Q ss_pred ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (737)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (737)
+ .........++++++ +++.++...++.|.+||. .++.+..+.. +.
T Consensus 225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------------------~~- 270 (326)
T 2ghs_A 225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYEV--------------------PG- 270 (326)
T ss_dssp C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEEC--------------------SC-
T ss_pred C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEEC--------------------CC-
Confidence 1 112234578899987 466666666788999998 3443322210 11
Q ss_pred cceeEEEEc-CCCCEEEEEeCC
Q 004685 280 LHLTHVTFS-PNGEEVLLSYSG 300 (737)
Q Consensus 280 ~~i~~v~~s-p~g~~l~~g~~d 300 (737)
..+++++|+ |++..|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 148999998 898887776654
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.44 E-value=1.4e-05 Score=90.95 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=52.0
Q ss_pred CCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCC
Q 004685 647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGA 710 (737)
Q Consensus 647 ~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~ 710 (737)
..+.|..||+.||+.+-.+.. ..++++..+++++.+++.++.||.|++||.++++.+....-.
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 358999999999999877763 345666777888888888999999999999999998776533
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.43 E-value=2.5e-05 Score=76.80 Aligned_cols=225 Identities=7% Similarity=-0.031 Sum_probs=134.7
Q ss_pred cccceeecccCC--ceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 40 LSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 40 ~~~~~~l~~H~~--~V~~l~~s~~g~~lasgs~--dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
.+.+.++. |.. ....|.|++++.++++.+. ++.|+++|+.+++.+..+..+.......+++.. +.++++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEec
Confidence 45566663 543 3689999998766665553 579999999999998887322222334555543 345555556
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
++.+.++|..+.. .+..+..-... ...+++++..+++ +..+++|.++|..+.+...
T Consensus 85 ~~~v~viD~~t~~----------v~~~i~~g~~~--g~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~----------- 140 (266)
T 2iwa_A 85 KNIGFIYDRRTLS----------NIKNFTHQMKD--GWGLATDGKILYG-SDGTSILYEIDPHTFKLIK----------- 140 (266)
T ss_dssp CSEEEEEETTTTE----------EEEEEECCSSS--CCEEEECSSSEEE-ECSSSEEEEECTTTCCEEE-----------
T ss_pred CCEEEEEECCCCc----------EEEEEECCCCC--eEEEEECCCEEEE-ECCCCeEEEEECCCCcEEE-----------
Confidence 8999999998632 23333211111 2335554545554 4567899999998765320
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.+. +.........++.+.|. + +.+++....++.|.+.|..+++.+..+.... ..+......
T Consensus 141 ~I~---------Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~~ 201 (266)
T 2iwa_A 141 KHN---------VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDEG 201 (266)
T ss_dssp EEE---------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHTT
T ss_pred EEE---------ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------ccccccccc
Confidence 000 00000011235677777 3 5666666678999999999988766553210 000000000
Q ss_pred CCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~ 311 (737)
.......+.++|+|+++.+++++. .++|++.++...
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 011113688999999887666665 789999998763
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=2.5e-05 Score=88.95 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=50.2
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeec-CCCceEEEEecCCCC-eEEEEec----------------CCcEEEE
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG-DEAVVNCVQCHPFDC-VVATSGI----------------DNTIKIW 696 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~g-H~~~V~~v~~sp~~~-~l~S~~~----------------Dg~i~lW 696 (737)
++.++.+++.|+.||.+++||..||+++..+.. +.....-+.|+++|+ +++..+. .+.+.++
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f 563 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF 563 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence 567888999999999999999999999999974 444445567789997 4444322 4678888
Q ss_pred cCC
Q 004685 697 TPS 699 (737)
Q Consensus 697 ~~~ 699 (737)
.+.
T Consensus 564 ~l~ 566 (677)
T 1kb0_A 564 VVG 566 (677)
T ss_dssp EET
T ss_pred ecc
Confidence 877
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.41 E-value=8.8e-05 Score=73.82 Aligned_cols=221 Identities=7% Similarity=0.004 Sum_probs=133.5
Q ss_pred CceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..+.+++|++++.. +++-...+.|.+++..++.....+ ........++++.|+. +.++++-...+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCE
Confidence 45789999996554 455556789999999866543333 2233567899999973 45556666678999999863211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.............++++|+++.++++... .+.|..+++..... ..+.
T Consensus 114 ----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~--------- 162 (267)
T 1npe_A 114 ----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILA--------- 162 (267)
T ss_dssp ----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEE---------
T ss_pred ----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEE---------
Confidence 11111122456899999965555555443 46788888754321 1111
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
. ........++++|+++.++++-...+.|.++|+........+ . ... ....+++
T Consensus 163 --~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------------------~-~~~---~P~gi~~ 216 (267)
T 1npe_A 163 --Q--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------------------E-GLQ---YPFAVTS 216 (267)
T ss_dssp --C--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE------------------E-CCC---SEEEEEE
T ss_pred --E--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe------------------c-CCC---CceEEEE
Confidence 0 112356889999975566677777789999998753211110 0 001 1345655
Q ss_pred cCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeec-CCCCeeeeeccC
Q 004685 288 SPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (737)
Q Consensus 288 sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (737)
. +..|+.+.. .+.|.++|..+++........ ...+..+++.|+
T Consensus 217 d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 217 Y--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred e--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 4 455666654 689999999886654443322 123566666665
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.40 E-value=0.00021 Score=75.11 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=67.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccC--------ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h--------~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 132 (737)
.+..|+.++.++.|..+|..+++.+..+.... ...+.+.-.. . +..++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~v~~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-S--GGHVYIGSEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-E--TTEEEEEETTSEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-e--CCEEEEEcCCCEEEEEECCCCCE---
Confidence 46678888889999999999999887763211 1223222222 2 46788888999999999886432
Q ss_pred CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
................. + ..++.++.++.|..+|..+++.
T Consensus 126 -------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 126 -------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV 165 (376)
T ss_dssp -------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred -------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence 22222111111112222 3 4666788899999999988763
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.35 E-value=1.4e-05 Score=83.15 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=129.9
Q ss_pred ccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEccc-----CccceEEEEEeeCCCCCEEEEEE---
Q 004685 48 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA--- 114 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~~~l~sgs--- 114 (737)
+|-..+.+|+|+++++++++-.. ++.|.+||+.+++.+..+... +...+..+++.|+. +..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence 45678999999999887776543 578999999999877666211 22456899999863 45556655
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
.++.|.+||+..... ...+..|..... ...+.+ ++..+.+.+.++.++.|.
T Consensus 143 ~~~~i~v~d~~~g~~----------~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~----------------- 194 (343)
T 2qe8_A 143 DKAALIRVDLQTGLA----------ARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH----------------- 194 (343)
T ss_dssp GGCEEEEEETTTCCE----------EEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------
T ss_pred CCCeEEEEECCCCCE----------EEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------
Confidence 678999999875321 222333211100 023333 345566667777765542
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
..+..++|+|+ ++.|+++..++ .+..++....... .+ .....+.....
T Consensus 195 ----------------------~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~-~~-------~~~~~~~~~~~ 243 (343)
T 2qe8_A 195 ----------------------LGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNL-QL-------TDAELGSKIER 243 (343)
T ss_dssp ----------------------CCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCT-TC-------CHHHHHTTCEE
T ss_pred ----------------------cccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCC-CC-------ChhhhhcceEe
Confidence 13578999997 46777766555 5555543211100 00 00000000000
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee-cCCCCeeeeeccC
Q 004685 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPT 332 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~ 332 (737)
.++.. ....++++++|.++++...++.|.+||..+++....... ....+..++|.|+
T Consensus 244 --~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 244 --YSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp --EEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred --cccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 01111 255689999999888888899999999855442222211 1334566777765
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.33 E-value=2.4e-05 Score=89.26 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=50.7
Q ss_pred CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCC
Q 004685 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 709 (737)
Q Consensus 648 D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~ 709 (737)
+|.|+.||+.||+.+-.+..|.. +..-.++..+.+++.++.||.|++||.++++.+-..+-
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 68999999999999988877653 44456677788999999999999999999998865543
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.23 E-value=8.4e-05 Score=77.94 Aligned_cols=212 Identities=12% Similarity=0.076 Sum_probs=120.4
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCC----eEEEEEc------ccCccceEEEEEeeCCCCCEEEEEECC------CcEEEE
Q 004685 60 SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE------TGHSANVFCTKFVPETSDELVVSGAGD------AEVRLF 122 (737)
Q Consensus 60 ~~g~~la-sgs~dg~V~vwd~~~~----~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iw 122 (737)
+++++|+ +|-.++.|.|+|+.+. +..+.+. ......-..+...|+ + +++++..+ |.|.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeEEEE
Confidence 6777665 5667889999999755 5566551 011224567788898 6 77777665 789999
Q ss_pred ecCCCCCCCCCCCCCCCceeecc--CC-CceeEEEEecCCCcEEEEEe-------------------CCCcEEEEEcCCC
Q 004685 123 NLSRFSGRGLDDNAITPSALYQC--HT-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHDFRQG 180 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~l~s~s-------------------~Dg~I~vwdl~~~ 180 (737)
|..+.+- +..+.. .. ..-..+.|+| +.+.+++.. .+.+|.+||+.++
T Consensus 170 D~~T~~v----------~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 170 DHYSFEP----------LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp CTTTCCE----------EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred ECCCCeE----------EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 9886332 333321 11 2234688899 556777764 3689999999876
Q ss_pred CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE--ecCCCcEEEEEe-----CCCcEEEEECCCCCCc--
Q 004685 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG-----SDAFARLYDRRMLPPL-- 251 (737)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~t~s-----~Dg~i~iwd~~~~~~~-- 251 (737)
+.. . .+... ........+.| +|++...++++- .++.|.+|....+...
T Consensus 239 k~~--------------~--------tI~vg-~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~ 295 (462)
T 2ece_A 239 KRI--------------H--------SLTLG-EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE 295 (462)
T ss_dssp EEE--------------E--------EEESC-TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred cEe--------------e--------EEecC-CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence 422 0 01100 01122334444 897544444454 6778887766532210
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~ 311 (737)
..+... +........... ...+........+.+||||++|+++.. .+.|.+||+...
T Consensus 296 ~vIdi~--~~~v~~~lp~~~-~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 296 KVIEIP--AEPLEGNLPEIL-KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEEEEC--CEECCSSCCGGG-GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EEEeCC--Cccccccccccc-cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 000000 000000000000 000000113678999999999999988 789999999754
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.22 E-value=1.4e-06 Score=91.78 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=71.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~ 186 (737)
+..+++++.|+.|+.||..+++. +..+.. ..+.+..+.. ++.++++++.|+.|..||..+++..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~----------~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~--- 72 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSI----------KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGL--- 72 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCE----------EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCS---
T ss_pred CCEEEEEcCCCEEEEEECCCCCE----------EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCcee---
Confidence 57899999999999999986432 333333 3444444444 4456777789999999999887632
Q ss_pred CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (737)
|.........+. ..+ .+. . +..+++++.|+.|+.||.++++.+..+..
T Consensus 73 -----------w~~~~~~~~~~~-----~sp----~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------- 120 (369)
T 2hz6_A 73 -----------TKLPFTIPELVQ-----ASP----CRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSS---------- 120 (369)
T ss_dssp -----------EECSCCHHHHHT-----TCS----CC-------CCCCEEEEEEEEECCC--------------------
T ss_pred -----------eeeeccCccccc-----cCc----eEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecC----------
Confidence 100000000000 000 011 1 24778888899999999998876544321
Q ss_pred cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+. ...++|++..+++++.|+.|+.||..+++
T Consensus 121 ----------~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 121 ----------AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ----------CC-----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 00 13456788889999999999999988854
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.16 E-value=9.4e-05 Score=71.85 Aligned_cols=209 Identities=9% Similarity=-0.034 Sum_probs=123.8
Q ss_pred cccceeecccCCc--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccce--EEEEEeeCCCCCEEEEE
Q 004685 40 LSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSG 113 (737)
Q Consensus 40 ~~~~~~l~~H~~~--V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V--~~v~~sp~~~~~~l~sg 113 (737)
.+.+.++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+. .. ... ..+++.. +.+++..
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~-~~~FgeGit~~g---~~ly~lt 103 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG-KRYFGEGISDWK---DKIVGLT 103 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC-TTCCEEEEEEET---TEEEEEE
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC-CccceeEEEEeC---CEEEEEE
Confidence 4556666 35433 4789998 677777877776 89999999999988873 22 233 3344432 2444444
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
-.++.+.+||..+.. .+..+.. ...-..++ +++..++ .+..++.|.++|..+.+...
T Consensus 104 w~~~~v~v~D~~t~~----------~~~ti~~-~~eG~glt--~dg~~L~-~SdGs~~i~~iDp~T~~v~~--------- 160 (262)
T 3nol_A 104 WKNGLGFVWNIRNLR----------QVRSFNY-DGEGWGLT--HNDQYLI-MSDGTPVLRFLDPESLTPVR--------- 160 (262)
T ss_dssp SSSSEEEEEETTTCC----------EEEEEEC-SSCCCCEE--ECSSCEE-ECCSSSEEEEECTTTCSEEE---------
T ss_pred eeCCEEEEEECccCc----------EEEEEEC-CCCceEEe--cCCCEEE-EECCCCeEEEEcCCCCeEEE---------
Confidence 468999999998633 2344432 12212333 4344444 44446789999988876320
Q ss_pred ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
.+ .+.........++.+.|. ++.+++..-.+..|.+.|.++++.+..+....-.+.. ..
T Consensus 161 --~I---------~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~-------~~- 219 (262)
T 3nol_A 161 --TI---------TVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA-------GP- 219 (262)
T ss_dssp --EE---------ECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS-------CS-
T ss_pred --EE---------EeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc-------cc-
Confidence 00 010000011334556776 3566666667889999999999876665432100000 00
Q ss_pred CCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (737)
Q Consensus 274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d 300 (737)
......-.+.+||+|+++.|++.+..
T Consensus 220 -~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 220 -LPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence 00111236889999998888887763
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.16 E-value=1.9e-05 Score=81.22 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCC
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 703 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~ 703 (737)
+.+++ .|..|+.+|.+..+|. +++.+..+......+.++...+++.+++ ++.+|.+++-.....++
T Consensus 262 ~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 262 IGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHHH 327 (330)
T ss_dssp ECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC-----
T ss_pred EcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecccccc
Confidence 34444 5666778889999996 8888888877777888888888888776 77899999987766554
No 237
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.11 E-value=0.0009 Score=65.31 Aligned_cols=231 Identities=11% Similarity=0.130 Sum_probs=135.8
Q ss_pred eeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685 44 RELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 44 ~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
+.+.|-.+.+..|+|+|++..| ++...++.|...|.. ++.+..+..........|++.++ +.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence 4566666789999999976644 557788999999998 88777773333356788899887 5666666567889999
Q ss_pred ecCCCCCCCCCCCCCC-CceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685 123 NLSRFSGRGLDDNAIT-PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (737)
++........ ..... ++. ..........++|+|.+..++ ++.......+|.+. +... .....++.+..
T Consensus 97 ~v~~~~~i~~-~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~-va~E~~p~~i~~~~-g~~~-------~~~l~i~~~~~ 165 (255)
T 3qqz_A 97 SLTPNSEVKI-LKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFW-FFKEKNPIEVYKVN-GLLS-------SNELHISKDKA 165 (255)
T ss_dssp EECTTCCEEE-EEEEECCCS-SCCCSSCCEEEEEETTTTEEE-EEEESSSEEEEEEE-STTC-------SSCCEEEECHH
T ss_pred EcCCCCeeee-eeeeccccc-cccccCCcceEEEeCCCCEEE-EEECcCCceEEEEc-cccc-------CCceeeecchh
Confidence 8875321000 00000 000 012344568999999554444 45544455555554 2100 00111111100
Q ss_pred CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
+. .......+.+++++|..+.+++.+.....|.++|... +.+..+..... + +- -.+.-..
T Consensus 166 ------~~-~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g-------~---~~--l~~~~~q 225 (255)
T 3qqz_A 166 ------LQ-RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKG-------S---RG--LSHNIKQ 225 (255)
T ss_dssp ------HH-HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTT-------G---GG--CSSCCCS
T ss_pred ------hc-cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCc-------c---CC--cccccCC
Confidence 00 0011234689999998888888888889999999763 33333211100 0 00 0011113
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
-..|+|.++|+ |++.+.-+.++.|.-.
T Consensus 226 pEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 226 AEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 67899999998 6666887788887644
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.08 E-value=0.00016 Score=75.82 Aligned_cols=254 Identities=12% Similarity=0.041 Sum_probs=141.5
Q ss_pred hhccccCCCCCccccccccccc--ccccccceeec------cc-CCceEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 004685 15 LDTRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSY 79 (737)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~------~H-~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~ 79 (737)
+.++.+-.+.-...+|.+.+.. -++.+..++++ .. ...-..+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 4455555555566778888754 23446666663 11 1234567888999 77776555 78999999
Q ss_pred CCCeEEEEEccc-Cc-cceEEEEEeeCCCCCEEEEEE-------------------CCCcEEEEecCCCCCCCCCCCCCC
Q 004685 80 SSRKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAIT 138 (737)
Q Consensus 80 ~~~~~~~~~~~~-h~-~~V~~v~~sp~~~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~~~ 138 (737)
.+.+.+.++..+ .. ..-..+.|+|+ ++.+++.. .+.+|.+||+....
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---------- 239 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---------- 239 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----------
T ss_pred CCCeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----------
Confidence 999999888422 11 22345888999 68888874 47899999998531
Q ss_pred CceeeccC--CCceeEEEE--ecCCCcEEEEEe-----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee-ec
Q 004685 139 PSALYQCH--TRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR-SL 208 (737)
Q Consensus 139 ~~~~~~~h--~~~v~~l~~--~p~~~~~l~s~s-----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (737)
....+..- ......+.| +|++...++++- .+++|.+|....+.. .....+++...... .+
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----------~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----------NAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----------EEEEEEEECCEECCSSC
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----------eEEEEEeCCCccccccc
Confidence 13333321 123445656 885544444444 677888877654320 11112222211100 01
Q ss_pred cCCC----CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC---CcccccCCCCCCCCccccccccccCCCCcccc
Q 004685 209 ADPP----KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP---PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (737)
Q Consensus 209 ~~~~----~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (737)
...+ ........|.++|++..++++.-..+.|.+||+.... .+..+..... ... +.+..+. .-...
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~----~~~--~~~~~G~-~~~gg 382 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI----FHR--ADHPAGH-KLTGA 382 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT----TTC--BCCTTSC-CCCSC
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe----ecc--ccccccc-cCCCC
Confidence 0000 0013467899999854444445567899999986322 1211111000 000 0000000 00002
Q ss_pred eeEEEEcCCCCEEEEEe
Q 004685 282 LTHVTFSPNGEEVLLSY 298 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~ 298 (737)
-..++++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 45689999999999998
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.03 E-value=0.00015 Score=70.41 Aligned_cols=210 Identities=7% Similarity=-0.063 Sum_probs=125.0
Q ss_pred cccceeecccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685 40 LSQERELEGHQG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (737)
Q Consensus 40 ~~~~~~l~~H~~--~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 117 (737)
.+.+.++ .|.. -...|.|+ ++.++++.+.+|.|+++|+.+++.+..+ ......-..+++.. +.+++..-.++
T Consensus 43 ~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g---~~Ly~ltw~~~ 116 (268)
T 3nok_A 43 AHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG---ERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS---SCEEEEESSSC
T ss_pred eEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC---CEEEEEEccCC
Confidence 3556666 3433 24788887 4677788889999999999999988776 33222223455543 35666666789
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.+.+||..+.. .+..+.. ...-..+++ ++ ..|+.+..++.|.++|..+.+... .+
T Consensus 117 ~v~V~D~~Tl~----------~~~ti~~-~~eGwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~v~~-----------~I 171 (268)
T 3nok_A 117 LLFTWSGMPPQ----------RERTTRY-SGEGWGLCY--WN-GKLVRSDGGTMLTFHEPDGFALVG-----------AV 171 (268)
T ss_dssp EEEEEETTTTE----------EEEEEEC-SSCCCCEEE--ET-TEEEEECSSSEEEEECTTTCCEEE-----------EE
T ss_pred EEEEEECCcCc----------EEEEEeC-CCceeEEec--CC-CEEEEECCCCEEEEEcCCCCeEEE-----------EE
Confidence 99999998633 2344432 222234444 34 455555568899999988876320 00
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (737)
.+.........++.+.|. ++.+++....+..|.+.|.++++.+..+.... ..+........
T Consensus 172 ---------~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~~ 232 (268)
T 3nok_A 172 ---------QVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVTN 232 (268)
T ss_dssp ---------ECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCCC
T ss_pred ---------EeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------CcccccccccC
Confidence 011111112345667777 35666666678899999999998666553210 00000000001
Q ss_pred cccceeEEEEcCCCCEEEEEeC
Q 004685 278 SSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 278 ~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
...-.+.|||+|+++.|++.+.
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEeCC
Confidence 1224788999998777766654
No 240
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.02 E-value=0.0018 Score=65.65 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=134.3
Q ss_pred cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--
Q 004685 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-- 117 (737)
Q Consensus 40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-- 117 (737)
.+.+..|... .....++|+++++++++-..++.|..||.... ....+ .....+.++++.++ +.++++.....
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcc
Confidence 4444555433 45778999999998888778899999998764 33333 12356889999998 67766654433
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (737)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~ 197 (737)
.|..++...... ..+... ........++..+ ++..+++-..++.|..+|...+... ...
T Consensus 96 ~v~~~d~~~g~~--------~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~-----------v~~ 154 (306)
T 2p4o_A 96 PVVSLVKSDGTV--------ETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS-----------IWL 154 (306)
T ss_dssp EEEEEECTTSCE--------EEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE-----------EEE
T ss_pred eEEEEcCCCCeE--------EEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe-----------EEE
Confidence 355566543221 001111 1122234455444 4455555556788888887643200 000
Q ss_pred EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCC
Q 004685 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (737)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (737)
.. +... ...........+.+ +|++..++++-...+.|..||+.. +.. .. ...+. ..
T Consensus 155 ~~---~~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~----------~~~~~--~~---- 211 (306)
T 2p4o_A 155 EH---PMLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GE----------PEIFV--EQ---- 211 (306)
T ss_dssp EC---GGGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CC----------CEEEE--ES----
T ss_pred EC---Cccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Cc----------cEEEe--cc----
Confidence 00 0000 00001111234455 676545666667788999999874 211 00 00000 00
Q ss_pred CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeec-CCCCeeeeec---cCCCCccC
Q 004685 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTV-GDASKIMSFT---PTLNGLEL 338 (737)
Q Consensus 277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~-~~~~~~~~~~---p~~~~~~~ 338 (737)
.....++++++|+++++....+.|.+++.. ++.... .... ...+..++|. |+...+..
T Consensus 212 ---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 212 ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp ---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred ---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence 124568999999876666668899999875 433211 1122 2456777887 66554433
No 241
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.01 E-value=0.0072 Score=62.51 Aligned_cols=224 Identities=8% Similarity=0.026 Sum_probs=137.0
Q ss_pred CceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..+.+++|++.... +++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCce
Confidence 34678999975554 455556788999998876544333 2233456789998864 56666666678899998863211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
.............++++|.++.++++-... +.|..+++...... .+
T Consensus 151 ----------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----------------------~~ 197 (349)
T 3v64_C 151 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----------------------II 197 (349)
T ss_dssp ----------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----------------------ES
T ss_pred ----------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-----------------------EE
Confidence 112222335578999999776677666655 78888887654311 01
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
. .......+.++|+|.++.++++-...+.|..+|+..... ..+.. . . ......+++
T Consensus 198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~-------------~------~-~~~P~giav- 253 (349)
T 3v64_C 198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-------------Q------G-LPHPFAITV- 253 (349)
T ss_dssp C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-------------S------S-CSSEEEEEE-
T ss_pred E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEe-------------C------C-CCCceEEEE-
Confidence 0 011235689999987666667766778999999874321 11100 0 0 112556777
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (737)
.++..+++-...+.|..++..+++........ ..+.....++|..
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~ 299 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR 299 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGG
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcccc
Confidence 34444444455789999997776655554433 3444445566654
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.99 E-value=0.00075 Score=64.93 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=123.8
Q ss_pred cccceeecccC--CceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685 40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (737)
Q Consensus 40 ~~~~~~l~~H~--~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 115 (737)
.+.+.++ .|. .-...|.|++ +.++.+.+.+| .|+++|+.+++.+..+.......-..+++.. +.+++..-.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~---~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR---DRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---CEEEEEEee
Confidence 4555666 454 3467899986 66677777654 8999999999998887322221223344443 345555556
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
++.+.+||..+.. .+..+.. ...-..++ +++..++++ ..++.|.++|..+.+...
T Consensus 84 ~~~v~v~D~~tl~----------~~~ti~~-~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~----------- 138 (243)
T 3mbr_X 84 NHEGFVYDLATLT----------PRARFRY-PGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVG----------- 138 (243)
T ss_dssp SSEEEEEETTTTE----------EEEEEEC-SSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEE-----------
T ss_pred CCEEEEEECCcCc----------EEEEEeC-CCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEE-----------
Confidence 8999999998633 2344432 22223444 435455544 457889999988876320
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
.+ .+.........++.+.+. ++..++..-.+..|.+.|.++++.+..+....-.+.... . .
T Consensus 139 ~I---------~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~ 199 (243)
T 3mbr_X 139 SI---------KVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T 199 (243)
T ss_dssp EE---------ECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred EE---------EEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence 00 011000111344566666 356666666788999999999987666542210000000 0 0
Q ss_pred CCcccceeEEEEcCCCCEEEEEeC
Q 004685 276 GRSSLHLTHVTFSPNGEEVLLSYS 299 (737)
Q Consensus 276 ~~~~~~i~~v~~sp~g~~l~~g~~ 299 (737)
.....-.+.+|++|+++.|++.+.
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCCceEEEEEcCCCCEEEEECC
Confidence 011224788999998887777765
No 243
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.93 E-value=0.0049 Score=64.74 Aligned_cols=225 Identities=8% Similarity=0.042 Sum_probs=136.3
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..+.+++|++.+. ++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCce
Confidence 4577899998555 5555566788999998876544433 2333456788998864 55666666678888887763211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
...+.........++++|.++.++++-... +.|..+++..... ..+..
T Consensus 194 ----------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~--------- 242 (386)
T 3v65_B 194 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD--------- 242 (386)
T ss_dssp ----------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred ----------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence 112222335678999998676666665555 7788888765321 11110
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
......+.++|+|.++.++++-...+.|..+|+..... ..+.. . . ......+++
T Consensus 243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~------------------~-~-~~~P~giav- 296 (386)
T 3v65_B 243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS------------------Q-G-LPHPFAITV- 296 (386)
T ss_dssp ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEEC------------------S-S-CSSEEEEEE-
T ss_pred ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEE------------------C-C-CCCceEEEE-
Confidence 11234688999987666667767778899999864321 11100 0 0 112566777
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCCC
Q 004685 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLN 334 (737)
Q Consensus 289 p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~~ 334 (737)
..+..+++-...+.|..++..+++....+... ..+.....++|..+
T Consensus 297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q 343 (386)
T 3v65_B 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ 343 (386)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGS
T ss_pred ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcC
Confidence 34444555555789999997776655554433 34444455566443
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.89 E-value=0.0021 Score=63.62 Aligned_cols=190 Identities=7% Similarity=0.024 Sum_probs=114.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEE----EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCC
Q 004685 63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 138 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 138 (737)
.+|+.+.. +.|+.++++..... ..+.......+.+++|+++. +.++++-..++.|..+++.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~--------- 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEP--------- 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCC---------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCCc---------
Confidence 34554443 47888888765321 11111223457899999973 45556666678999999864211
Q ss_pred CceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce
Q 004685 139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (737)
Q Consensus 139 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (737)
.............+++++.++.++++-...+.|.++++..... ..+.. ......
T Consensus 71 -~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P 124 (267)
T 1npe_A 71 -TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP 124 (267)
T ss_dssp -EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred -EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence 1122222246789999986666777777778999999864321 11110 011345
Q ss_pred EEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE
Q 004685 219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (737)
Q Consensus 219 ~~i~~sp~~~~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~ 296 (737)
..++++|+++.++++... .+.|..+++.... ...+. . . . ......++++|++..|+.
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------------~-----~-~-~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------------Q-----D-N-LGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------------C-----T-T-CSCEEEEEEETTTTEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------------E-----C-C-CCCCcEEEEcCCCCEEEE
Confidence 789999965555555443 4688888875322 11110 0 0 0 113678999998887777
Q ss_pred EeC-CCeEEEEEcCC
Q 004685 297 SYS-GEHVYLMDVNH 310 (737)
Q Consensus 297 g~~-dg~v~iwd~~~ 310 (737)
+.. .+.|.++|+..
T Consensus 184 ~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 184 VDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETTTTEEEEEETTE
T ss_pred EECCCCEEEEEecCC
Confidence 765 67999999865
No 245
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.86 E-value=0.012 Score=59.99 Aligned_cols=226 Identities=6% Similarity=-0.025 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (737)
Q Consensus 51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~ 126 (737)
..+.+++|++.+. ++++-...+.|..+++.+ +.....+....-.....+++.+.. +.++++-...+.|.+.++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCCC
Confidence 4577999998655 455555678999999876 122222212222456789998753 55666666788999998863
Q ss_pred CCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685 127 FSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
.. ... ..........++++|.++.++++.... +.|...++..... ..+..
T Consensus 109 ~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~----- 160 (316)
T 1ijq_A 109 VK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----- 160 (316)
T ss_dssp SS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC-----
T ss_pred Cc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE-----
Confidence 11 122 222335678999998666666665443 6788887754320 11110
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
......+.++++++++.++++-...+.|..+|+.... ...+.. ..........
T Consensus 161 --------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~------------------~~~~~~~P~g 213 (316)
T 1ijq_A 161 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILE------------------DEKRLAHPFS 213 (316)
T ss_dssp --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEE------------------CTTTTSSEEE
T ss_pred --------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEee------------------cCCccCCcEE
Confidence 1123568999998766666666677899999987422 111110 0000012456
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (737)
Q Consensus 285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (737)
+++. .+..+++-...+.|..++..+++....+... ..+.....++|..
T Consensus 214 iav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~ 262 (316)
T 1ijq_A 214 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 262 (316)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred EEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEecccc
Confidence 7774 3444455555789999998877654444322 3444555566543
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.86 E-value=0.00019 Score=77.96 Aligned_cols=190 Identities=7% Similarity=0.009 Sum_probs=116.3
Q ss_pred ccccccccccccccccce--eecccCCceEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeE
Q 004685 27 NHSLQMHSSLVRRLSQER--ELEGHQGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKL 84 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~-s-~~g~~lasgs------------------~dg~V~vwd~~~~~~ 84 (737)
+.+|..-| ...++..+ ++. ....+..+++ + |+++++++++ .++.|.++|.++++.
T Consensus 111 ~~rVavId--l~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v 187 (595)
T 1fwx_A 111 NTRVARVR--CDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 187 (595)
T ss_dssp TTEEEEEE--TTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE
T ss_pred CCEEEEEE--CCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE
Confidence 34444444 33444444 333 2245788998 5 8999998884 346799999999998
Q ss_pred EEEEcccCccceEEEEEeeCCCCCEEEEEECCC--------------------------------------cEEEEecCC
Q 004685 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSR 126 (737)
Q Consensus 85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--------------------------------------~I~iwd~~~ 126 (737)
..++.-+. ....++++|+ +.++++.+.+. .|.+.|.+.
T Consensus 188 ~~qI~Vgg--~pd~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 188 AWQVLVSG--NLDNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp EEEEEESS--CCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred EEEEEeCC--CccceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 88874322 4567889999 68887777553 234444432
Q ss_pred CCCCCCCCCCCCC-ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 127 FSGRGLDDNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
..+ .. +..+. -.....++.++|++..+++++..+.+|.++|+.+.+..... .. .....+.
T Consensus 264 ~~~--------~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l-~~~~~v~-------- 324 (595)
T 1fwx_A 264 EAS--------SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA-DPRSAVV-------- 324 (595)
T ss_dssp GGC--------CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-CGGGGEE--------
T ss_pred cCC--------ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc-CcccceE--------
Confidence 100 11 12222 22345789999976566667777899999999864210000 00 0000011
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
... .-......++|+|++ ..+++...|+.|.+||+..
T Consensus 325 ---~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 ---AEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ---ECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred ---EEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 111 122456889999985 7777888999999999876
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.79 E-value=0.04 Score=63.97 Aligned_cols=213 Identities=9% Similarity=0.034 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 132 (737)
|.++...+++.+.+ |+.++-|..||..+++............|.++...++ +.+. .|+.++-|.+||.....-...
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lw-igt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIW-VATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEE-EEEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEE-EEECCCCeEEEeCCCCeEEEe
Confidence 88888888776555 5655568899987776543221223567888888877 4544 455444488888764221100
Q ss_pred CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (737)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (737)
.. .......-....|.++...+ ++.+. .|+.+ .|.+||..+.... .+..... ....
T Consensus 251 ~~---~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~-------------~~~~~~~-----~~~~ 306 (795)
T 4a2l_A 251 LH---SPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFA-------------SYSSNPV-----ENGS 306 (795)
T ss_dssp CC---CTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEE-------------EECCCTT-----STTS
T ss_pred ec---CCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEE-------------EEecCCC-----CCCC
Confidence 00 00000001235689998887 43444 55555 6899997655311 0000000 0001
Q ss_pred CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (737)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~ 292 (737)
.....|.++...+++ .|..|+.++-|..|+...... ..+.... . ..+-....|.++...++|.
T Consensus 307 l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~-~~~~~~~-------------~-~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF-KNIRNIP-------------Y-KNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp CSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS-EEECCCT-------------T-SSSCSCSSEEEEEECTTSC
T ss_pred CCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc-eEEcCCC-------------C-CCCCCCCeeEEEEECCCCC
Confidence 123568888888863 567788888899998765431 1111000 0 0111122499999999887
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 004685 293 EVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 293 ~l~~g~~dg~v~iwd~~~~ 311 (737)
|.+|+.++.|..|+..++
T Consensus 370 -lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp -EEEEESSSCEEEECTTTC
T ss_pred -EEEEECCCCeEEEcCCCC
Confidence 566788878999987763
No 248
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.74 E-value=0.017 Score=59.67 Aligned_cols=199 Identities=9% Similarity=0.028 Sum_probs=124.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
...+|.+..+++.+++ +. ...|+..++........+ . ....+..++|.+.. +.++.+-...+.|..+++.....
T Consensus 34 d~~~C~~~~~~~~ll~-~~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~- 107 (349)
T 3v64_C 34 DRRSCKALGPEPVLLF-AN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV- 107 (349)
T ss_dssp TSSCEEESSSCCEEEE-EC-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCCcccccccCceeEe-ec-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc-
Confidence 3456766666443333 32 346888898776554433 2 33457899999874 45555555678899898874221
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (737)
.............+++.+.++.++++-...+.|.+.++..... ..+..
T Consensus 108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~----------- 155 (349)
T 3v64_C 108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW----------- 155 (349)
T ss_dssp ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-----------
T ss_pred ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe-----------
Confidence 1112222334578999886777777777788999999875431 11110
Q ss_pred CCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685 211 PPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
........++++|.++.++++-... +.|..+++..... ..+.. ......+.++|+|
T Consensus 156 --~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~--------------------~~~~~PnGla~d~ 212 (349)
T 3v64_C 156 --QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD--------------------THLFWPNGLTIDY 212 (349)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCC--------------------SSCSCEEEEEEET
T ss_pred --CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEE--------------------CCCCCcceEEEeC
Confidence 1123468899999766667776666 7888888764321 11100 0111367899999
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC
Q 004685 290 NGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 290 ~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
++..|+.+.. .+.|..+++..
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCEEEEEeCCC
Confidence 8777777765 67899999875
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0057 Score=69.34 Aligned_cols=65 Identities=6% Similarity=-0.010 Sum_probs=51.0
Q ss_pred EecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCC
Q 004685 644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 709 (737)
Q Consensus 644 sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~ 709 (737)
....+|.|+.||+.||+.+=.+..+. ++....+...+.+++.++.||.|++||.++++.+-...-
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 44567999999999999987776543 344455556678888899999999999999998866543
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0053 Score=69.65 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=40.1
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCce-EEEEecCCCC-eEEEEe
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG 688 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V-~~v~~sp~~~-~l~S~~ 688 (737)
+...+.+|+.|+.|+.+++||.++|+++-.+....+.. .-+.+..+++ +++.++
T Consensus 465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 45578899999999999999999999999987654322 2344556776 555544
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.68 E-value=0.13 Score=59.67 Aligned_cols=217 Identities=11% Similarity=0.083 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-------CccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
...|.+|...+++.+.+ |+.++-|.+||..+++..... .. ....|.++...++ +.+.+ |+.+ -|.+|
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWI-GTFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEE-EESS-CEEEE
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEE-EeCC-hhheE
Confidence 45688888877777555 444445889998876544322 11 2356899988877 55554 4455 58888
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
+.....-..... .+.....-....|.++...+ ++. |..|+.++.|..|+....... .+....
T Consensus 288 ~~~~~~~~~~~~---~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~~~ 349 (795)
T 4a2l_A 288 HEGTDSFASYSS---NPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRFK-------------NIRNIP 349 (795)
T ss_dssp ETTTTEEEEECC---CTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSSE-------------EECCCT
T ss_pred cCCCCeEEEEec---CCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccce-------------EEcCCC
Confidence 876422100000 00000011235689998887 434 556888888999987654311 000000
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC-CCcccc
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLH 281 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 281 (737)
. ........|.++...+++ .|.+|+.++-|..||..+.... .+... ..... +-....
T Consensus 350 ~------~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~-~~~~~-------------~~~~~~~l~~~~ 407 (795)
T 4a2l_A 350 Y------KNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFT-SYTLQ-------------EDESARGIGSNN 407 (795)
T ss_dssp T------SSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEE-EECCC-------------------CCSCSC
T ss_pred C------CCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEE-EEecC-------------CCCcccCCCCcc
Confidence 0 001123458888887753 5667888888999998764321 11000 00000 001125
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
|.+++..++|..|.+|+.++.|.+||..+++
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 8999999999867778887889999988754
No 252
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.62 E-value=0.048 Score=57.36 Aligned_cols=228 Identities=7% Similarity=-0.012 Sum_probs=133.4
Q ss_pred cCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685 49 HQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 49 H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
....+.+|+|++.+..| ++-...+.|..+++... .....+ .........+++.+.. +.++++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence 34567899999865544 45556788999998752 222222 3344567889999853 56666666778899888
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
+..... ...+.........|+++|.++.++++-.. .+.|...++...... .+..
T Consensus 188 ~~g~~~----------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~~~~--- 242 (400)
T 3p5b_L 188 TKGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLVT--- 242 (400)
T ss_dssp TTTCSE----------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE------------EEEC---
T ss_pred CCCCce----------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE------------EEEE---
Confidence 763211 11222234457899999966666655433 367888887654311 1110
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
......+.+++++.++.++++-...+.|..+|+..... ..+.. ..+.. ...
T Consensus 243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-----------------~~~~l-~~P 293 (400)
T 3p5b_L 243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE-----------------DEKRL-AHP 293 (400)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEE-----------------CSSTT-SSE
T ss_pred ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEe-----------------CCCCC-CCC
Confidence 11245688999987666666666678999999864322 11110 00000 124
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (737)
..+++. .+..+++-...+.|..+|..+++........ ..+.....++|..
T Consensus 294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 344 (400)
T ss_dssp EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGG
T ss_pred EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeecc
Confidence 456662 3344444455789999998887655544432 3344455566643
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.59 E-value=0.0015 Score=64.15 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=114.7
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCC
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGN 159 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~ 159 (737)
+.+.++..+.......++|+|+ +.++++.+. ++.|.++|+.++.- +..+. +.......+++. +
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~--g 75 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLL--N 75 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEE--T
T ss_pred eEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEe--C
Confidence 4556663222234689999997 555565543 68999999987432 23322 111122345554 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (737)
Q Consensus 160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~ 239 (737)
..+.++.-.++.+.++|..+.+.+ ..+... .. . .+.+++++ ..++++..++.
T Consensus 76 ~~lyv~t~~~~~v~viD~~t~~v~----------------------~~i~~g--~~-~--g~glt~Dg-~~l~vs~gs~~ 127 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRRTLSNI----------------------KNFTHQ--MK-D--GWGLATDG-KILYGSDGTSI 127 (266)
T ss_dssp TEEEEEETTCSEEEEEETTTTEEE----------------------EEEECC--SS-S--CCEEEECS-SSEEEECSSSE
T ss_pred CEEEEEEecCCEEEEEECCCCcEE----------------------EEEECC--CC-C--eEEEEECC-CEEEEECCCCe
Confidence 466666677899999999877532 111111 00 1 12345554 44555557899
Q ss_pred EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeee
Q 004685 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRY 318 (737)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~ 318 (737)
|.++|..+.+.+..+.... .+..-..++.+.|. +|. +++.. .++.|.+.|..+++......
T Consensus 128 l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 128 LYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEE
Confidence 9999999877665543211 01111126678888 674 55555 57899999999987655543
Q ss_pred ecC-------------CCCeeeeeccCCCCc
Q 004685 319 TVG-------------DASKIMSFTPTLNGL 336 (737)
Q Consensus 319 ~~~-------------~~~~~~~~~p~~~~~ 336 (737)
..+ ...+.++|+|..+.+
T Consensus 190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred CCCcccccccccccccCceEEEEEcCCCCEE
Confidence 221 355778888875543
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.59 E-value=0.00021 Score=77.64 Aligned_cols=222 Identities=12% Similarity=0.136 Sum_probs=125.5
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEE-e-eCCCCCEEEEEE------------------CCCc
Q 004685 60 SKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE 118 (737)
Q Consensus 60 ~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~-s-p~~~~~~l~sgs------------------~dg~ 118 (737)
+||++|+.... ++.|.+.|+.+.++...+.-.....+..+++ . |+ +.+++.++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence 37887776654 5679999999999887542223456889998 4 88 57777774 2456
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---------------cEEEEEcCCCCCC
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC 183 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---------------~I~vwdl~~~~~~ 183 (737)
+.+.|..+.. ....+.-- .....++++|+ ++++++.+.+. .|.+.|.......
T Consensus 177 vtvID~~t~~----------v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 177 FTAVDADKWE----------VAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEEETTTTE----------EEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEECCCCe----------EEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 8888887521 12222211 13456788995 46666666442 3666665432211
Q ss_pred CCCCCCCCccceEEEeccC--Cce--eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685 184 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (737)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (737)
.............++|... +.. ..+.. .....++.++|++...++++..+.+|.++|+.+.+... .....
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~ 318 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD 318 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence 0000000012244555544 211 11111 12456789999864456666688999999998642100 00000
Q ss_pred CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
+... ....-.-+.....++|+|+| ++++... |+.|.+||+.+
T Consensus 319 ~~~~--------v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 319 PRSA--------VVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGG--------EEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cccc--------eEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 0000 00000112247789999999 6666655 99999999987
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.58 E-value=0.0018 Score=62.88 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=110.9
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE--EEEecC
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK--LAVEVG 158 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~p~ 158 (737)
+.+.++..........+.|+ + +.++.+.+.+| .|+.+|+.+++- +..+.- ...... +++.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~-- 95 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDW-- 95 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEE--
T ss_pred EEEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEe--
Confidence 34556632233446889998 5 57778888776 899999987432 233321 223333 4443
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+..+.+..-.++.+.+||..+.+.+ ..+.. .. .-..++ +++ ..|+.+..++
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~----------------------~ti~~-~~---eG~glt--~dg-~~L~~SdGs~ 146 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQV----------------------RSFNY-DG---EGWGLT--HND-QYLIMSDGTP 146 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEE----------------------EEEEC-SS---CCCCEE--ECS-SCEEECCSSS
T ss_pred CCEEEEEEeeCCEEEEEECccCcEE----------------------EEEEC-CC---CceEEe--cCC-CEEEEECCCC
Confidence 4456656667899999999887633 01111 01 112333 443 4555555678
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee
Q 004685 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~ 317 (737)
.|.++|..+.+.+..+.... .+..-..++.+.|. +|+ |+++. .++.|.+.|..+++.....
T Consensus 147 ~i~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 147 VLRFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEEEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred eEEEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEE
Confidence 89999999887665543210 11111135667776 675 55555 5889999999997755444
Q ss_pred eec------------CCCCeeeeeccCCC
Q 004685 318 YTV------------GDASKIMSFTPTLN 334 (737)
Q Consensus 318 ~~~------------~~~~~~~~~~p~~~ 334 (737)
... ....+.++|.|..+
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCC
Confidence 322 23445667766543
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.54 E-value=0.0015 Score=66.78 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=107.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (737)
+..|..++.++.|..+|.. ++....+ ......+.++...++ +. +..++.++.|..+|.. +.. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~~----------~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GTE----------KW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SCE----------EE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CCE----------eE
Confidence 4567778888999999988 7766665 344455666666665 44 6667778999999987 221 22
Q ss_pred eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE
Q 004685 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (737)
Q Consensus 142 ~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (737)
.+......+.++.+.+ ++.++ .++ +.|..+| .+++. ++... .....+.++
T Consensus 171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~--------------~~~~~-----------~~~~~~~~~ 220 (330)
T 3hxj_A 171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTE--------------KWNFY-----------AGYWTVTRP 220 (330)
T ss_dssp EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCE--------------EEEEC-----------CSSCCCSCC
T ss_pred EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcE--------------EEEEc-----------cCCcceece
Confidence 3333344566677766 44444 455 7899999 55431 12111 111345666
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004685 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg 301 (737)
...++ + .+.+++.++.|..+|. +++.+..+.. . ...+..+.+.+++. |.+++.+|
T Consensus 221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~-~~~~~~~~~~~~g~-l~v~t~~g 275 (330)
T 3hxj_A 221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------G-KRIESSPVIGNTDT-IYFGSYDG 275 (330)
T ss_dssp EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------S-SCCCSCCEECTTSC-EEEECTTC
T ss_pred EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------C-CCccccceEcCCCe-EEEecCCC
Confidence 67764 2 5666777888888874 3332222110 0 00133355566664 77888898
Q ss_pred eEEEEEcCCCC
Q 004685 302 HVYLMDVNHAG 312 (737)
Q Consensus 302 ~v~iwd~~~~~ 312 (737)
.|..+|. +++
T Consensus 276 gl~~~d~-~g~ 285 (330)
T 3hxj_A 276 HLYAINP-DGT 285 (330)
T ss_dssp EEEEECT-TSC
T ss_pred CEEEECC-CCc
Confidence 9999985 444
No 257
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.53 E-value=0.038 Score=56.13 Aligned_cols=224 Identities=10% Similarity=0.073 Sum_probs=132.9
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685 52 CVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (737)
Q Consensus 52 ~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~ 130 (737)
.+.+|+|++. +.++.+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSLR- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCcE-
Confidence 4668999985 45555666778899999887632211112223456788998763 56666666778999999864211
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
.............++++|.++.++++-. ..+.|...++..... ..+..
T Consensus 114 ---------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------- 162 (318)
T 3sov_A 114 ---------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN---------- 162 (318)
T ss_dssp ---------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred ---------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence 1112233456789999986655555542 357788888764321 11110
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
......+.++|+|+++.++++=+..+.|..+|+.... ...+.. +. ......+++..
T Consensus 163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-------------------~~-~~~P~glav~~ 218 (318)
T 3sov_A 163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-------------------GS-LPHPFALTLFE 218 (318)
T ss_dssp ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-------------------SC-CSCEEEEEEET
T ss_pred ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec-------------------CC-CCCceEEEEeC
Confidence 1123468999999766666666777899999986422 111110 00 11245677753
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcceeeee-cCCCCeeeeeccCC
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTL 333 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~~ 333 (737)
+..+.+-...+.|..++..+++....... ...+.....++|..
T Consensus 219 -~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~ 262 (318)
T 3sov_A 219 -DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR 262 (318)
T ss_dssp -TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGG
T ss_pred -CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEecccc
Confidence 33444444578999999988775444433 24444455566643
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.50 E-value=0.017 Score=60.50 Aligned_cols=197 Identities=8% Similarity=0.027 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 132 (737)
-+|.+..+.+ +|+.+ ....|+.+++........+ . ....+..++|.+.. +.++++-...+.|..+++.....
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~--- 150 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV--- 150 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCE---
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCCc---
Confidence 3455555533 34333 3357899998876554433 2 33557899999863 45555656678899998874221
Q ss_pred CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (737)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (737)
.............+++++.++.++++-...+.|.+.++..... ..+..
T Consensus 151 -------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~------------- 198 (386)
T 3v65_B 151 -------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW------------- 198 (386)
T ss_dssp -------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------
T ss_pred -------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------
Confidence 1112222234567889886767777777778888888764321 11110
Q ss_pred CCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685 213 KQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
........++++|.++.++++-... +.|..+++...... .+.. ......+.++|+|++
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~--------------------~~~~~PnGlavd~~~ 257 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIAD--------------------THLFWPNGLTIDYAG 257 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC--------------------SSCSCEEEEEEEGGG
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEE--------------------CCCCCeeeEEEeCCC
Confidence 1123568899999766666666555 78888887643211 1100 001136789999987
Q ss_pred CEEEEEeC-CCeEEEEEcCC
Q 004685 292 EEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 292 ~~l~~g~~-dg~v~iwd~~~ 310 (737)
..|+.+.. .+.|..+|+..
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 258 RRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TEEEEEETTTTEEEEECTTS
T ss_pred CEEEEEECCCCEEEEEeCCC
Confidence 77777765 67899999765
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.48 E-value=0.049 Score=60.33 Aligned_cols=65 Identities=6% Similarity=-0.090 Sum_probs=43.4
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEecCCc----EEEEcCCC
Q 004685 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGIDNT----IKIWTPSA 700 (737)
Q Consensus 636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~~Dg~----i~lW~~~~ 700 (737)
...+..|+.|+.|+.+++||..||+++-.+...... -.-+.+.++++ |+++.+.++. +..+++.+
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~~g~~~~~~~~~~~~ 542 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTD 542 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHTTCCC
T ss_pred EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCCCCccceeEeccccC
Confidence 335677778999999999999999999888744321 22344678887 5555544433 33445544
No 260
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.41 E-value=0.025 Score=58.90 Aligned_cols=207 Identities=11% Similarity=0.014 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (737)
Q Consensus 61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (737)
++..++.++.++.|..+|..+++.+..+ ............ . +..++.++.++.|..+|..++.. +
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~~p~~-~---~~~v~v~~~~g~l~~~d~~tG~~----------~ 166 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT-KVAGEALSRPVV-S---DGLVLIHTSNGQLQALNEADGAV----------K 166 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE-ECSSCCCSCCEE-E---TTEEEEECTTSEEEEEETTTCCE----------E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE-eCCCceEcCCEE-E---CCEEEEEcCCCeEEEEECCCCcE----------E
Confidence 4567888889999999999999988776 322221111122 2 35788888899999999876432 1
Q ss_pred eeeccCCCc-----eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC-----------------CCC--------
Q 004685 141 ALYQCHTRR-----VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------SSH-------- 190 (737)
Q Consensus 141 ~~~~~h~~~-----v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~-----------------~~~-------- 190 (737)
......... ....... + ..++.++.++.|..+|..+++..-... ...
T Consensus 167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~ 243 (376)
T 3q7m_A 167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF 243 (376)
T ss_dssp EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence 222111110 0112222 2 356677888889999987776431000 000
Q ss_pred ---CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685 191 ---QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (737)
Q Consensus 191 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (737)
.......++...+........ .....+... +..+++++.++.|..+|..+++.+......
T Consensus 244 ~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---------- 306 (376)
T 3q7m_A 244 ALAYNGNLTALDLRSGQIMWKREL----GSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL---------- 306 (376)
T ss_dssp EECTTSCEEEEETTTCCEEEEECC----CCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT----------
T ss_pred EEecCcEEEEEECCCCcEEeeccC----CCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc----------
Confidence 011112222222322111111 112233332 347777788899999999887654332100
Q ss_pred ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (737)
Q Consensus 268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~ 314 (737)
... .+..... .+..|++++.+|.|+++|..+++..
T Consensus 307 --------~~~--~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 307 --------LHR--LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp --------TTS--CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred --------CCC--cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 000 1112222 3567999999999999999997643
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.40 E-value=0.013 Score=59.73 Aligned_cols=201 Identities=10% Similarity=0.034 Sum_probs=111.3
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEee-CCCCCEEEEEEC----------
Q 004685 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVP-ETSDELVVSGAG---------- 115 (737)
Q Consensus 52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp-~~~~~~l~sgs~---------- 115 (737)
.+.+|++.+ +++++ .+...+.|..+|..+++.. .+.. + .......+++.+ + |.++++-..
T Consensus 81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHH
T ss_pred CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCC--CEEEEECCcccccccccce
Confidence 578999998 66544 4544456888997765422 2211 1 113468899999 7 677776432
Q ss_pred -------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004685 116 -------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (737)
Q Consensus 116 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~ 188 (737)
++.|..||..... +..+.........++++|++..++++-...+.|..|++......
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----- 220 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----- 220 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-----
T ss_pred ehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-----
Confidence 3667777765321 11121122345679999944335555566789999998753210
Q ss_pred CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC----------CCcEEEEECCCCCCcccccCCC
Q 004685 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRM 258 (737)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~ 258 (737)
....+. ..+ . ...++++++ ++++++... .+.|..+|.. ++.+..+...
T Consensus 221 ----~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~- 278 (322)
T 2fp8_A 221 ----TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP- 278 (322)
T ss_dssp ----CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC-
T ss_pred ----ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC-
Confidence 001111 111 2 567889987 455555543 4667788764 4433322211
Q ss_pred CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.+.....++.+++ .++.++++....+.|.++++...
T Consensus 279 ----------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 279 ----------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ----------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ----------------CCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 0000113666666 45655555556789999998753
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.38 E-value=0.006 Score=59.20 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=113.9
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee--EEEEecCCC
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK--KLAVEVGNP 160 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~p~~~ 160 (737)
+.+.++..........+.|+. +.++++.+.+|.|+.+|+.+++- +..+ -..... .+++. +.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv----------~~~~--l~~~~FgeGit~~--g~ 106 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQP----------VWME--RLGNIFAEGLASD--GE 106 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSSC----------SEEE--ECTTCCEEEEEEC--SS
T ss_pred EEEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCcE----------EeEE--CCCCcceeEEEEe--CC
Confidence 445555323334567888874 47888888899999999987432 2333 122233 35543 44
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004685 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (737)
Q Consensus 161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i 240 (737)
.+++..-.++.+.+||..+.+.+ ..+.. . ..-..++ ++ +..|+++..++.|
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~----------------------~ti~~-~---~eGwGLt--~D-g~~L~vSdGs~~l 157 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRE----------------------RTTRY-S---GEGWGLC--YW-NGKLVRSDGGTML 157 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEE----------------------EEEEC-S---SCCCCEE--EE-TTEEEEECSSSEE
T ss_pred EEEEEEccCCEEEEEECCcCcEE----------------------EEEeC-C---CceeEEe--cC-CCEEEEECCCCEE
Confidence 66666778899999999887633 01111 1 1113444 33 3566666678999
Q ss_pred EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeeee
Q 004685 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYT 319 (737)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~ 319 (737)
.++|..+.+.+..+.... .+..-..++.+.|. +|+ |+++. .++.|.+.|..+++.......
T Consensus 158 ~~iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEEcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 999999887666553211 11111135677777 775 55555 578999999999875444332
Q ss_pred c-------------CCCCeeeeeccCCC
Q 004685 320 V-------------GDASKIMSFTPTLN 334 (737)
Q Consensus 320 ~-------------~~~~~~~~~~p~~~ 334 (737)
. ....+.+++.|..+
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred CCCcccccccccCcCCceEEEEEcCCCC
Confidence 2 23556677776543
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.38 E-value=0.0092 Score=60.84 Aligned_cols=201 Identities=8% Similarity=0.030 Sum_probs=112.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-------------------CccceEEEEEeeCCCCCEEE
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------------------HSANVFCTKFVPETSDELVV 111 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-------------------h~~~V~~v~~sp~~~~~~l~ 111 (737)
....+++|+++++++.++..++.|..||..+++.. .+... ....+.++++.++. +. |+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~-l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQ-LY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC-Cc-EE
Confidence 34567899999998888888999999998765432 22110 01357899999731 44 55
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCCCcee-ec-cCCCceeEEEEec-CCCcEEEEEeC-----------------CCc
Q 004685 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQ-CHTRRVKKLAVEV-GNPHVVWSASE-----------------DGT 171 (737)
Q Consensus 112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~-~h~~~v~~l~~~p-~~~~~l~s~s~-----------------Dg~ 171 (737)
.+...+.|..+|....... .+.. .. ........+++.+ ++ .++++-.. ++.
T Consensus 96 v~d~~~~i~~~d~~~g~~~--------~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT--------QLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EEETTTEEEEECTTCEECE--------EEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred EEECCCCEEEEeCCCCEEE--------EecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCce
Confidence 5544555888876532110 0110 01 0123467788887 44 55544322 245
Q ss_pred EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
|..||..+++. ..+. ........++|+|++..++++-...+.|.+|++.....
T Consensus 167 v~~~d~~~~~~-----------------------~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~- 219 (322)
T 2fp8_A 167 LIKYDPSTKET-----------------------TLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK- 219 (322)
T ss_dssp EEEEETTTTEE-----------------------EEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-
T ss_pred EEEEeCCCCEE-----------------------EEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-
Confidence 66666544321 0000 00123467899997433444546678999999875321
Q ss_pred ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----------CCeEEEEEcC
Q 004685 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN 309 (737)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----------dg~v~iwd~~ 309 (737)
.. ...+. .+ .. ...++++++|.+.++... .+.|..+|..
T Consensus 220 ~~----------~~~~~--~~------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 220 GT----------AEVLV--KI------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp TC----------EEEEE--EC------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred Cc----------cceEE--eC------CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 00 00010 00 11 566899999986666554 3567777653
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.37 E-value=0.089 Score=60.31 Aligned_cols=226 Identities=8% Similarity=-0.012 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 50 ~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
...+.+|+|++... ++++-...+.|+.+++... .....+ .........|++.+.. +.++++-...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEeC
Confidence 45677899998544 5555566788999998753 222223 3334567789999874 456666667889999998
Q ss_pred CCCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685 125 SRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (737)
.... ...+ .........|+++|..+.++++-... +.|...++..... ..+..
T Consensus 501 dG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~--- 554 (791)
T 3m0c_C 501 KGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--- 554 (791)
T ss_dssp TSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC---
T ss_pred CCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe---
Confidence 7321 2222 22344578999999666666665333 6788888765431 11110
Q ss_pred CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (737)
........|++++..+.++++=.....|..+++...... .+... .+.-. ..
T Consensus 555 ----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~-----------------~~~l~-~P 605 (791)
T 3m0c_C 555 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED-----------------EKRLA-HP 605 (791)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEEC-----------------TTTTS-SE
T ss_pred ----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecC-----------------CCccC-CC
Confidence 112457889999876666666566778999998643321 11100 00001 13
Q ss_pred eEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeee-cCCCCeeeeeccCCC
Q 004685 283 THVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLN 334 (737)
Q Consensus 283 ~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~~~ 334 (737)
..|++ .+.+|+.+.. .+.|...|..+++....+.. ...+..+..|+|..+
T Consensus 606 ~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Q 657 (791)
T 3m0c_C 606 FSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ 657 (791)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGS
T ss_pred CEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccC
Confidence 45665 3445666654 68899999888765554433 345555566776543
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.36 E-value=0.048 Score=60.50 Aligned_cols=54 Identities=19% Similarity=0.059 Sum_probs=39.6
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEec
Q 004685 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGI 689 (737)
Q Consensus 636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~~ 689 (737)
...+.+|+.|+.|+.++.||.+||+++-+++-..+. ..-+.|..+|+ |+++.+.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 346788888999999999999999999888754322 23356678886 5555443
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.28 E-value=0.11 Score=52.64 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee
Q 004685 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 151 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 151 (737)
..|+..|+.+.+....+ . ....+..++|.+.. +.++++-..++.|..+++....... .....+........
T Consensus 10 ~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPD 80 (316)
T ss_dssp SSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCC
T ss_pred CeEEEEECCCcceEehh-c-CCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEEeCCCCCcC
Confidence 47999999887655544 2 34567899999873 4555666667899999887410000 00111222224557
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE
Q 004685 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (737)
Q Consensus 152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l 231 (737)
.+++++.+++++++-...+.|.++++..... ..+.. ........++++|.++.++
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEeCCCCCEEE
Confidence 8999875667777777788999999764321 11111 0123567899999766566
Q ss_pred EEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 004685 232 LVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (737)
Q Consensus 232 ~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~ 309 (737)
++.... +.|..+++.... ...+. . ........++++|++..|+.+.. .+.|..+|+.
T Consensus 136 ~~d~~~~~~I~~~~~dG~~-~~~~~-------------~-------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGVD-IYSLV-------------T-------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEECSSSCEEEEEETTSCC-EEEEE-------------C-------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEccCCCCeEEEEcCCCCC-eEEEE-------------E-------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 665443 688888875321 11110 0 01113678999998888877765 6799999987
Q ss_pred C
Q 004685 310 H 310 (737)
Q Consensus 310 ~ 310 (737)
.
T Consensus 195 g 195 (316)
T 1ijq_A 195 G 195 (316)
T ss_dssp S
T ss_pred C
Confidence 4
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.27 E-value=0.059 Score=56.72 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=118.3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee
Q 004685 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (737)
Q Consensus 64 ~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 143 (737)
+|+.+. ...|+..++........+ .....+..++|.+.. +.++.+-...+.|+.+++....... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence 444443 368999999876554444 345678899999873 4455555567889888886421000 012222
Q ss_pred ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE
Q 004685 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (737)
Q Consensus 144 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (737)
.........+++.+.+++++++-...+.|.+.++..... ..+.. ........+++
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav 209 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV 209 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence 223456788999886667777777788899988875431 11111 11234678999
Q ss_pred ecCCCcEEEEEeC-CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC
Q 004685 224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 301 (737)
Q Consensus 224 sp~~~~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg 301 (737)
+|.++.++.+-.. .+.|...++.......... ........|+++|++..|+.+.. .+
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---------------------~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------------------ENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---------------------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---------------------CCCCceEEEEEEeCCCEEEEEECCCC
Confidence 9976656555433 3788888886432111100 00114778999998888888765 67
Q ss_pred eEEEEEcCCC
Q 004685 302 HVYLMDVNHA 311 (737)
Q Consensus 302 ~v~iwd~~~~ 311 (737)
.|..+|+...
T Consensus 269 ~I~~~d~dG~ 278 (400)
T 3p5b_L 269 SISSIDVNGG 278 (400)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 8999998753
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.25 E-value=0.041 Score=55.51 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685 51 GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~ 128 (737)
..+.+|++.++|+++++..... .|..+|..+++...............++..+. +..+++-..++.|..+|.....
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCCc
Confidence 4688999999999766654432 47777877776543321112223345555554 3445554468888888876321
Q ss_pred CCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC-CCCCCCCCCCCCccceEEEeccCCcee
Q 004685 129 GRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.... ....... ............+ +++++.++++-...+.|..+++.. +... ....+...
T Consensus 150 ~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~---------~~~~~~~~------ 211 (306)
T 2p4o_A 150 GSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFVEQ------ 211 (306)
T ss_dssp EEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEEES------
T ss_pred EeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC---------ccEEEecc------
Confidence 1100 0000000 0000111234455 675555666777788999999875 2210 00111110
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc--cccCCCCCCCCccccccccccCCCCcccceeE
Q 004685 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT--SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (737)
.....++++++ ++++++....+.|.++|.. ++... .+. ......++
T Consensus 212 ---------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~~~~~~---------------------~~~~~p~~ 259 (306)
T 2p4o_A 212 ---------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTIIAQAE---------------------QGVIGSTA 259 (306)
T ss_dssp ---------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEEEECGG---------------------GTCTTEEE
T ss_pred ---------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEEEeecc---------------------cccCCceE
Confidence 13456888987 5777777778899999875 33211 110 00113789
Q ss_pred EEEc---CCCCEEEEEeCCC
Q 004685 285 VTFS---PNGEEVLLSYSGE 301 (737)
Q Consensus 285 v~~s---p~g~~l~~g~~dg 301 (737)
++|. |++..|++++..+
T Consensus 260 ~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 260 VAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECCSTTTTTEEEEEECTT
T ss_pred EEEecccCCCCEEEEECCCC
Confidence 9999 8988888877653
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.24 E-value=0.03 Score=62.16 Aligned_cols=61 Identities=11% Similarity=-0.083 Sum_probs=43.6
Q ss_pred CCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004685 647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (737)
Q Consensus 647 ~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~ 708 (737)
.+|.+..||+.||+.+=+..-- .++++-.....+.+++.++.||.|+.||.++++.+-..+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 5689999999999988666421 222222223345667779999999999999999876543
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.23 E-value=0.058 Score=59.82 Aligned_cols=60 Identities=12% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCce-EEEEecCCCC-eEEEEec-CCcEEEE
Q 004685 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSGI-DNTIKIW 696 (737)
Q Consensus 637 ~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V-~~v~~sp~~~-~l~S~~~-Dg~i~lW 696 (737)
..+.+|+.|+.|+.++.||.+||+++-.++...+.+ .-+.|..+|+ |++..+. -|.+-+|
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence 357788889999999999999999999988754433 2366778887 5555443 3434444
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.20 E-value=0.014 Score=67.09 Aligned_cols=120 Identities=12% Similarity=0.074 Sum_probs=70.7
Q ss_pred ccCC-ceEEEEEc-CCCCEEEEEe-CC----CcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---
Q 004685 48 GHQG-CVNAISWN-SKGSLLISGS-DD----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--- 116 (737)
Q Consensus 48 ~H~~-~V~~l~~s-~~g~~lasgs-~d----g~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--- 116 (737)
+|.. .+...+|| |||++||-+. .+ .+|+++|+.++ +.+... -......++|+|+ ++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence 3443 67889999 9999887543 22 25999999998 632210 0122457889999 5666666554
Q ss_pred --CcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCC
Q 004685 117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG 180 (737)
Q Consensus 117 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~ 180 (737)
..|.++++....... ...+. ........+.|+|++..++++... ...|.++|+.++
T Consensus 245 ~~~~v~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEEETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCEEEEEECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 257777776432110 11221 223446788999955444444432 235777777664
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.20 E-value=0.013 Score=56.39 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=102.3
Q ss_pred eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCce--eEEEEecC
Q 004685 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVG 158 (737)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~ 158 (737)
+.+..+.......+..+.|++. .++.+.+.+| .|+.+|+.++.- +.... -.... -.+++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv----------~~~~~-l~~~~fgeGi~~~-- 73 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGRI----------LQRAE-VPPPYFGAGIVAW-- 73 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCCE----------EEEEE-CCTTCCEEEEEEE--
T ss_pred EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCCE----------EEEEe-CCCCcceeEEEEe--
Confidence 3455553233456779999863 6777777754 899999987432 22222 12222 234443
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
+.+++...-.++.+.+||..+.+.+ ..+.. .. .-..++ +++ ..|+++..++
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~----------------------~ti~~-~~---~Gwglt--~dg-~~L~vSdgs~ 124 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPR----------------------ARFRY-PG---EGWALT--SDD-SHLYMSDGTA 124 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEE----------------------EEEEC-SS---CCCEEE--ECS-SCEEEECSSS
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEE----------------------EEEeC-CC---CceEEe--eCC-CEEEEECCCC
Confidence 4466666677899999999887633 01111 11 113444 443 4555556689
Q ss_pred cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee
Q 004685 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~ 317 (737)
.|.++|..+.+.+..+.... ++..-..++.+.|. +|+ |++.. .+..|.+.|..+++.....
T Consensus 125 ~l~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 125 VIRKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEE
T ss_pred eEEEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEE
Confidence 99999999887665553211 11111135667765 665 45554 5789999999998755443
Q ss_pred e
Q 004685 318 Y 318 (737)
Q Consensus 318 ~ 318 (737)
.
T Consensus 187 d 187 (243)
T 3mbr_X 187 D 187 (243)
T ss_dssp E
T ss_pred E
Confidence 3
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.51 Score=54.38 Aligned_cols=217 Identities=8% Similarity=0.071 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc------cCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~ 124 (737)
..|.+|...++|.+.+ |+.+ -|.+||..+++...-... .....|.++...++ + .|..|+..+-|.+++.
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g-~lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD--N-KLWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT--S-EEEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC--C-CEEEEeCCCCeEEECC
Confidence 4688998888887655 4444 688999877654322100 12356888888776 4 4555666556888887
Q ss_pred CCCCCCCCCCCCC----CCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685 125 SRFSGRGLDDNAI----TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (737)
Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 200 (737)
....-.......+ ............|.++...+ .+. |..|+.++.|..++....... .+..
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~ 350 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFH-------------TWSY 350 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcce-------------eecc
Confidence 6532111000000 00000011345688988877 333 557887888999987754311 0000
Q ss_pred cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
.... -.........|.++...++ + .|.+|+.++-|..||..+.... .+.. + ..-...
T Consensus 351 ~~~~---~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~-~~~~------------~-----~~~~~~ 407 (781)
T 3v9f_A 351 SPTQ---MNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAI-YNKE------------N-----RELLSN 407 (781)
T ss_dssp ---C---CCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEE-CC----------------------CCCS
T ss_pred Cccc---cccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEE-EccC------------C-----CCCCCc
Confidence 0000 0000112346788888775 3 5667776777889998653211 0000 0 001112
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
.|.++...++|. |.+|+.++.|..+|..++
T Consensus 408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLK 437 (781)
T ss_dssp BEEEEEECTTSC-EEEEETTEEEEEECSSSC
T ss_pred ceEEEEECCCCC-EEEEeccCCEEEEcCCCC
Confidence 589999988887 555777778999987764
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.09 E-value=0.094 Score=53.14 Aligned_cols=184 Identities=7% Similarity=0.032 Sum_probs=112.2
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 150 (737)
...|+.++++.......+.......+..++|.+.. +.++.+-...+.|..+++...... ...+.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~---------~~~~~~~l~~p 81 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESV---------QNVVVSGLLSP 81 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCC---------CEEEEECCSCC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCce---------EEEEcCCCCCc
Confidence 35799999987631111111223456789999864 455566666788999988743210 11222223456
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (737)
Q Consensus 151 ~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (737)
..+++.+.++.++++-...+.|.++++..... ..+.. ........++++|.++.+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM 136 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence 78999876777777777788999999875431 11110 112346789999875555
Q ss_pred EEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 004685 231 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV 308 (737)
Q Consensus 231 l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~ 308 (737)
+.+-. ..+.|..+++.... ...+.. ......+.++|+|++..|+.+.. .+.|..+|+
T Consensus 137 y~td~~~~~~I~r~~~dG~~-~~~~~~--------------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSS-RFIIIN--------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EEEECSSSCEEEEEETTSCS-CEEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCCEEEEEEcCCCC-eEEEEE--------------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 55542 35788888876322 111100 00113678999998877777765 679999998
Q ss_pred CC
Q 004685 309 NH 310 (737)
Q Consensus 309 ~~ 310 (737)
..
T Consensus 196 dG 197 (318)
T 3sov_A 196 DG 197 (318)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.05 E-value=0.088 Score=60.33 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=115.8
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 150 (737)
...|+..++........+ .....+..|+|.+.. +.++++-...+.|+.+++....... .....+.......
T Consensus 403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P 473 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP 473 (791)
T ss_dssp BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence 457888888876554433 234567899999863 4556666667889888886421100 0122222234556
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (737)
Q Consensus 151 ~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (737)
..|++.+.+++++++-...+.|.+.++..... ..+.. ........|+++|..+.+
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCCE
Confidence 78999986767888888889999999875431 11111 112346889999976656
Q ss_pred EEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 004685 231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV 308 (737)
Q Consensus 231 l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~ 308 (737)
+++-... +.|...++..... ..+.. ........|++++.+..|+.+.. .+.|..+++
T Consensus 529 YwtD~g~~~~I~~~~~dG~~~-~~lv~--------------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLNGVDI-YSLVT--------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEECSSSCEEEEEETTSCCE-EEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEecCCCCCeEEEEecCCCce-EEEEe--------------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 6655343 7788888864321 11110 01114788999988887887765 578999998
Q ss_pred CCCC
Q 004685 309 NHAG 312 (737)
Q Consensus 309 ~~~~ 312 (737)
....
T Consensus 588 dG~~ 591 (791)
T 3m0c_C 588 NGGN 591 (791)
T ss_dssp TSCS
T ss_pred CCCc
Confidence 6543
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.99 E-value=0.0043 Score=70.60 Aligned_cols=209 Identities=6% Similarity=-0.037 Sum_probs=117.1
Q ss_pred CceEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685 51 GCVNAISWNSKGSLLISG-SDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
..+.+|+|++.+..|+.+ ...+.|+.+++.+ ......+ .........|++.+.. +.++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence 346689999866655544 4567899999875 2222212 1122345678887653 5666665667889999876
Q ss_pred CCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
... ...+ .........|+++|.++.++++-... +.|..+++...... .+
T Consensus 484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l------ 534 (699)
T 1n7d_A 484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SL------ 534 (699)
T ss_dssp SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EE------
T ss_pred CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EE------
Confidence 421 1222 11223457788988665655554333 67777766543210 00
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
+. ......+.|+|+|+++.++++-...+.|..+|+.... ...+... . .......
T Consensus 535 ----~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~-----------------~-~~~~~P~ 588 (699)
T 1n7d_A 535 ----VT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED-----------------E-KRLAHPF 588 (699)
T ss_dssp ----SC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCC-----------------S-SSCSSCC
T ss_pred ----Ee---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEec-----------------C-CcCCCce
Confidence 00 0123456899999866777777778899999986432 1111100 0 0000133
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004685 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 317 (737)
.|++..+ .++++....+.|..++..+++....+
T Consensus 589 glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 589 SLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 4555443 33444445789999998876544333
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.97 E-value=0.26 Score=49.93 Aligned_cols=202 Identities=9% Similarity=0.112 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC--CCC---EEEEEE-C--CCcEEEEecCCCCCCCCC
Q 004685 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGA-G--DAEVRLFNLSRFSGRGLD 133 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~---~l~sgs-~--dg~I~iwd~~~~~~~~~~ 133 (737)
..+++.....+-+.+||+ +|+.+..+ .. ..++.+..-|.- .+. ++++.. . +++|.+|++......
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--- 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--- 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence 356666677889999999 78888877 32 567777776631 011 233333 3 589999987532211
Q ss_pred CCCCCCceeec-------cCCCceeEEEE--ecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 134 DNAITPSALYQ-------CHTRRVKKLAV--EVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 134 ~~~~~~~~~~~-------~h~~~v~~l~~--~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
+..+. .-...+..+++ +|..+ .++++...+|.+..|++.....- .-....+
T Consensus 113 ------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lV------ 173 (355)
T 3amr_A 113 ------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKV------ 173 (355)
T ss_dssp ------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEE------
T ss_pred ------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEE------
Confidence 22221 11145566777 66444 36778888999999998542110 0000111
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
..+.. ...+-.|...+.. ..|+++-.+.-|..||.+...... ...+..+ ..++-...+.
T Consensus 174 -----R~f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~------~~g~l~aDvE 232 (355)
T 3amr_A 174 -----RAFKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRA------DGRHLTRDIE 232 (355)
T ss_dssp -----EEEEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSC--------CEEEEEB------SSSSBCSCEE
T ss_pred -----EEecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCC--------ceEEEEe------cCCccccCcc
Confidence 11111 2357788899864 688888888777777755221000 0000000 0112222477
Q ss_pred EEEE--cCCCC-EEEEEeC-CCeEEEEEcCC
Q 004685 284 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 284 ~v~~--sp~g~-~l~~g~~-dg~v~iwd~~~ 310 (737)
.|++ .++++ ||++++. ++.+.+||...
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 7777 56666 7777774 78999999973
No 278
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.90 E-value=0.45 Score=53.11 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..+.+|+|++.+..| ++-..++.|..+++........+ .........+++.+.. ++++++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCcE
Confidence 457799999965554 45566789999998765443333 2233457789998764 55666666678899998863211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
.......-.....|+++|..+.++++- +..+.|...++..... ..+.
T Consensus 115 ----------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~---------- 162 (628)
T 4a0p_A 115 ----------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLV---------- 162 (628)
T ss_dssp ----------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE----------
T ss_pred ----------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEE----------
Confidence 111113334568999999666666554 2356777777765431 1111
Q ss_pred cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (737)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 288 (737)
. .......+++++.++.++++-...+.|..+|+..... ..+. .... ....+++.
T Consensus 163 -~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~------------------~~l~---~P~glav~ 216 (628)
T 4a0p_A 163 -P---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA------------------DDLP---HPFGLTQY 216 (628)
T ss_dssp -C---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE------------------ECCS---CEEEEEEE
T ss_pred -C---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee------------------ccCC---CceEEEEE
Confidence 0 1245689999997666666666778999999875332 1110 0001 24467775
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685 289 PNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (737)
Q Consensus 289 p~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (737)
. + .|+.+. ..+.|...|..+++....+... ..+.....++|..
T Consensus 217 ~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~ 261 (628)
T 4a0p_A 217 Q-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSR 261 (628)
T ss_dssp T-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGG
T ss_pred C-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecc
Confidence 4 3 555555 4789999998887765544433 3344455666643
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.90 E-value=0.037 Score=62.56 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=47.7
Q ss_pred CCCCEEEEecCCC-----------cEEEEEcCcccEEEEe--ecCCCceE-EEEecCCCCeEEEEecC-----------C
Q 004685 637 QRGDYIASGSDDG-----------RWFIWEKQTGRLIKML--LGDEAVVN-CVQCHPFDCVVATSGID-----------N 691 (737)
Q Consensus 637 ~d~~~l~sgs~D~-----------~i~iWd~~t~~~~~~l--~gH~~~V~-~v~~sp~~~~l~S~~~D-----------g 691 (737)
.++++++.|+.++ .|.+||..+....... .-+..+.. +++..|++++++.||.+ .
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence 4677788877543 6889999988876654 33455543 34567899999999975 4
Q ss_pred cEEEEcCCCCC
Q 004685 692 TIKIWTPSASV 702 (737)
Q Consensus 692 ~i~lW~~~~~~ 702 (737)
.+.+||+.+.+
T Consensus 489 ~v~~ydp~t~~ 499 (656)
T 1k3i_A 489 TPEIYVPEQDT 499 (656)
T ss_dssp CCEEEEGGGTE
T ss_pred ceEEEcCCCCc
Confidence 68999987754
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.79 E-value=0.0086 Score=67.86 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=62.3
Q ss_pred ccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCC
Q 004685 29 SLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPET 105 (737)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~ 105 (737)
.+.+|+....+...+..+.. +.....++++.+++++++.|+. +..+.+||..+.+....- ..+.. .-.+++..++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d- 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD- 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-
Confidence 46677766666666655543 3333446778899999999984 568999999877544321 11222 2234556666
Q ss_pred CCCEEEEEE-CC-----CcEEEEecCC
Q 004685 106 SDELVVSGA-GD-----AEVRLFNLSR 126 (737)
Q Consensus 106 ~~~~l~sgs-~d-----g~I~iwd~~~ 126 (737)
+.+++.|+ .+ ..+.+||..+
T Consensus 298 -g~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 298 -GRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp -SCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred -CeEEEEeCcccCCcccccceEeCCCC
Confidence 68888888 44 5689999875
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.41 Score=51.24 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=47.9
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEEEEeecC--------------C----------CceEEEEecCC-CCeEEEEecCC
Q 004685 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD--------------E----------AVVNCVQCHPF-DCVVATSGIDN 691 (737)
Q Consensus 637 ~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH--------------~----------~~V~~v~~sp~-~~~l~S~~~Dg 691 (737)
.+|+++++=...+.|+.++ .+| .+.++.|. . ..-.+|++.++ +.++++=....
T Consensus 389 ~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~ 466 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH 466 (496)
T ss_dssp CCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence 4567777777788888888 566 45555543 1 23678999997 77777766788
Q ss_pred cEEEEcCCCCCCccccC
Q 004685 692 TIKIWTPSASVPSIVSG 708 (737)
Q Consensus 692 ~i~lW~~~~~~~~~~~~ 708 (737)
.||.++++.....+-.+
T Consensus 467 rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 467 TIRTISMEQEENVAGDE 483 (496)
T ss_dssp EEEEEEECCCC------
T ss_pred EEEEEECCCCcccccCC
Confidence 99999999988877444
No 282
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.71 E-value=0.56 Score=46.65 Aligned_cols=234 Identities=11% Similarity=0.124 Sum_probs=132.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 136 (737)
-.+|..+.||.=. ..++.|+|+++.+.++.+. ....|..=+|-.. +.|+-.+ +..|+-|++....
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~---~~L~lVT-~taVyHWs~~~~s-------- 137 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------- 137 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS---SEEEEEE-SSEEEEEESSTTC--------
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCC---CeEEEEc-CCcEEEEcccCCC--------
Confidence 3578888777655 5789999999999988873 4568888888776 5665554 5689999987422
Q ss_pred CCCceeeccC----CCceeEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 137 ITPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 137 ~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.|...+..| ...|..-..+++..-++++|- -.|.+.+|..+..... .++
T Consensus 138 -~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-------------~ie------- 196 (365)
T 2xzh_A 138 -QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-------------PIE------- 196 (365)
T ss_dssp -CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-------------EEC-------
T ss_pred -CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-------------eee-------
Confidence 334555444 245666666774433444432 2367778887665311 110
Q ss_pred eccCCCCCccceEEEEE--ecCCCcEEEEEeC---CCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 207 SLADPPKQTLSLKSCDI--SSTRPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~--sp~~~~~l~t~s~---Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
+|......+.+ ++....+|+.+.. .+.++|.++... .....+.. .....+.+. .....
T Consensus 197 ------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k-----k~vdi~fpp----ea~~D- 260 (365)
T 2xzh_A 197 ------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPP----EAQND- 260 (365)
T ss_dssp ------CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC-----EEEEECCCT----TCTTC-
T ss_pred ------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc-----ccceeeCCc----cccCC-
Confidence 11111101100 1111112222221 258999988542 11111100 000101111 11111
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004685 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (737)
--.++..++....++.-+.-|.|++||+.++.......-..+++-..+......++......
T Consensus 261 FPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 261 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC
Confidence 25578899988999999999999999999998777766666666655655544444433333
No 283
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.65 E-value=0.45 Score=53.04 Aligned_cols=186 Identities=6% Similarity=-0.033 Sum_probs=117.5
Q ss_pred CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (737)
Q Consensus 70 ~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (737)
....|+..++++......+....-..+..++|.+.. +.++.+-..++.|..+++..... ...+......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~~----------~~v~~~g~~~ 81 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSAL----------EHVVEFGLDY 81 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC----------EEEECSSCSC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCCc----------EEEEeCCCCC
Confidence 346899999987654333322233567899999974 55556666788899888864211 1122222245
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc
Q 004685 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (737)
Q Consensus 150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 229 (737)
...+++++.+++++++-...+.|.+.++..... ..+.. .......+++++|..+.
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALALDPAEGF 136 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEEETTTTE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEEccCCCe
Confidence 678999886777777777788999999875431 11110 11234589999997665
Q ss_pred EEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004685 230 LLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMD 307 (737)
Q Consensus 230 ~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd 307 (737)
++.+-. ..+.|...++..... ..+. ........+++++++..|+.+.. .+.|..+|
T Consensus 137 lY~tD~g~~~~I~r~~~dG~~~-~~l~---------------------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 137 MYWTEWGGKPKIDRAAMDGSER-TTLV---------------------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp EEEEECSSSCEEEEEETTSCSC-EEEE---------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCCce-EEEE---------------------CCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 555542 256777777764321 1110 01114778999998888887766 67999999
Q ss_pred cCCCCc
Q 004685 308 VNHAGG 313 (737)
Q Consensus 308 ~~~~~~ 313 (737)
+.....
T Consensus 195 ~dG~~~ 200 (628)
T 4a0p_A 195 MLGLNR 200 (628)
T ss_dssp TTSCSC
T ss_pred CCCCce
Confidence 876443
No 284
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.57 E-value=0.41 Score=53.29 Aligned_cols=223 Identities=9% Similarity=0.036 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
+.+.+|+|++.+..|+-+ ...+.|..++++.......+....-.....+++.+.. +.++++-...+.|.+.++....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC-
Confidence 456789999966655544 4567899999876532222213333568899999863 5566666678999999987421
Q ss_pred CCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
...+ ...-.....|+++|.++.++++-. ..+.|...++..... ..+..
T Consensus 118 ----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~-------- 167 (619)
T 3s94_A 118 ----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN-------- 167 (619)
T ss_dssp ----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred ----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe--------
Confidence 1222 133445678999996666665542 245666666654321 11110
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
......+.+++++.++.++++-...+.|..+|+...... .+.. .. . . ....+++
T Consensus 168 -----~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~-------------~~---~-~---~P~gi~~ 221 (619)
T 3s94_A 168 -----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK-------------GS---L-P---HPFALTL 221 (619)
T ss_dssp -----SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEEE
T ss_pred -----CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEe-------------CC---C-C---CceEEEE
Confidence 112456899999976666666667788999988643211 1100 00 0 0 1235677
Q ss_pred cCCCCEEEEEe-CCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685 288 SPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (737)
Q Consensus 288 sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (737)
..+ .|+.+. ..+.|...|..+++........ ..+.....++|..
T Consensus 222 ~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~ 267 (619)
T 3s94_A 222 FED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR 267 (619)
T ss_dssp SSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGG
T ss_pred eCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEcccc
Confidence 655 555555 4789999999887655443332 3445555566643
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.49 E-value=0.34 Score=51.35 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=92.6
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---Cc-EEEEecC
Q 004685 52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~-I~iwd~~ 125 (737)
...+|+|+|+ ...|..+...+.|+.+|..+++..... .......+++|+++ +.++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEECC
Confidence 4578999985 344544444489999999877655433 34456899999999 6755554322 11 2222221
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
. .. .....+. .......++++|.++.++++-..++.|..+|..++... ..+...
T Consensus 216 ~--~~-------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~----- 269 (433)
T 4hw6_A 216 S--GF-------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMM----- 269 (433)
T ss_dssp G--TT-------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEEC-----
T ss_pred C--Ce-------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEecc-----
Confidence 1 10 0001111 23445678898866677766667788999988755410 011100
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
. .......++|+|++..++++-...+.|+.++..
T Consensus 270 ---~----~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 270 ---D----TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ---S----CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred ---C----CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 0 011224699999853356666677899998875
No 286
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.45 E-value=0.17 Score=55.88 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccee
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~ 316 (737)
.+..+++++.||.|+.||..+++..-.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 466788899999999999999775433
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.34 E-value=2.2 Score=49.03 Aligned_cols=222 Identities=10% Similarity=0.011 Sum_probs=117.3
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcc-----cCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685 51 GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (737)
Q Consensus 51 ~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd 123 (737)
..|.+|.... ++.+ ..++.++-|..||..+++... +.. .....|.++...++ +. |..+..++-|..||
T Consensus 115 ~~i~~i~~d~~~~g~l-wi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~ 189 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGL-WVCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAED--GK-LYIGHVEGGLSILS 189 (781)
T ss_dssp SCEEEEEECSSTTSEE-EEEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEET--TE-EEEEETTTEEEEEE
T ss_pred CcceEEEecCccCCCE-EEEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCC--CC-EEEEecCCCeEEEc
Confidence 3688888877 6664 446545568889987766433 311 12345888888776 44 44466665688888
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (737)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (737)
.....-.... ..+.....-....|.++...+ ++.+. .++.+ .+.+||..+..... ....
T Consensus 190 ~~~~~~~~~~---~~~~~~~~l~~~~i~~i~~d~-~g~lw-igt~~-Gl~~~d~~~~~~~~---------------~~~~ 248 (781)
T 3v9f_A 190 LNDKSVKHFV---HDPQNPNSLPGNDVRCIYKDT-NGNIW-IGTSK-GLALFNANTETFTN---------------FHNN 248 (781)
T ss_dssp TTTTEEEEEC---C--------CCSSEEEEEECT-TCCEE-EEETT-EEEEEETTTTEEEC-------------------
T ss_pred CCCCceEeee---cCCCCcccCCCCceeEEEEcC-CCCEE-EEeCC-cHheECCCCCcEEE---------------EEcC
Confidence 7642110000 000000001135688888877 44444 45555 68999976653110 0000
Q ss_pred ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (737)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (737)
. ..........|.++...++ ..|..|+..+-|.++|............. ...+. ......+-....|.
T Consensus 249 ~---~~~~~l~~~~i~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~------f~~~~-~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 249 P---GNIHGALSSYIFSIKQLKD--NKLWIATELNGIMILDLQQNQFLLPEQIR------FEFIR-EGDNNYSLSNASAR 316 (781)
T ss_dssp ----------CCCCEEEEEECTT--SEEEEEESSSCEEEEETTCC---------------CEEEC-BCSSTTSBSSSCEE
T ss_pred C---CccccccCceEEEEEECCC--CCEEEEeCCCCeEEECCCCCeeeeeeccc------ccccc-CCCCCCCCCCCeEE
Confidence 0 0000012346888888775 36777777567889998765421110000 00000 00000111122599
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (737)
Q Consensus 284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~ 311 (737)
++...++|. |-+|+.++.|..|+..+.
T Consensus 317 ~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 317 YIFQDSFNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp EEEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred EEEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence 999999887 667777778888887764
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.17 E-value=3.3 Score=49.53 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685 50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 50 ~~~V~~l~~s~~------g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
.+.|.|+++.|. +.++|.|.. |++|+|+++.+.+.+....-+......++.+.......+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 368999986 9999999999877665432122234455555433214578899999998877
Q ss_pred ecCC
Q 004685 123 NLSR 126 (737)
Q Consensus 123 d~~~ 126 (737)
.+..
T Consensus 633 ~~d~ 636 (1158)
T 3ei3_A 633 GLNI 636 (1158)
T ss_dssp EECT
T ss_pred EEcC
Confidence 7654
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.14 E-value=0.13 Score=54.50 Aligned_cols=158 Identities=7% Similarity=0.005 Sum_probs=96.1
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC----cEEEEecC
Q 004685 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg----~I~iwd~~ 125 (737)
....|+|+| ++..|..+...+.|+.+|+.++...... ........++|+++ ++.|+.+.. ++ .+..++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 4555555554488999999877654433 24456889999999 675544443 22 23333322
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
. .. .....+. .......++++|.++.++++-..++.|..++....... .+.
T Consensus 214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~------- 264 (430)
T 3tc9_A 214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLF------- 264 (430)
T ss_dssp G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEE-------
T ss_pred C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEE-------
Confidence 1 11 1012222 13345778899966677777777789999998754310 011
Q ss_pred eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
... .......++|+|++..++++-...+.|..++...
T Consensus 265 ----~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 265 ----TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ----ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ----EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 000 1134578999998532566666778999988753
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.08 E-value=1.7 Score=45.15 Aligned_cols=235 Identities=11% Similarity=0.110 Sum_probs=134.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (737)
Q Consensus 57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 136 (737)
-.+|..+.||-=. ..++.|+|+++.+.++.+. ....|..-+|-.. +.|+-.+ +..|+-|++....
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~s-------- 136 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------- 136 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSSC--------
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCC---CeEEEEc-CCeeEEecccCCC--------
Confidence 3577777777655 5799999999999888873 4567888888876 4555544 6789999986421
Q ss_pred CCCceeeccC----CCceeEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 137 ITPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 137 ~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
.|...+..| ...|..-..+++..-++++|- -.|.+.+|..+..... ...
T Consensus 137 -~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ie------------------ 195 (494)
T 1bpo_A 137 -QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIE------------------ 195 (494)
T ss_dssp -CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EEC------------------
T ss_pred -CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hhe------------------
Confidence 345555444 245666667774433343332 2467788887765421 111
Q ss_pred eccCCCCCccceEEEEEe--cCCCcEEEEEeC---CCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCccc
Q 004685 207 SLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~s--p~~~~~l~t~s~---Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (737)
+|......+.+. +....+++.+.. .+.++|.++... .....+.. .....+.+. .....
T Consensus 196 ------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k-----k~vdv~fpp----e~~~D- 259 (494)
T 1bpo_A 196 ------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPP----EAQND- 259 (494)
T ss_dssp ------CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-----EEEECCCCT----TSTTC-
T ss_pred ------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-----eeeeeeCCc----ccccC-
Confidence 111111111111 100123333322 378999998543 11111100 000111111 11111
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCC
Q 004685 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 343 (737)
--.++..++....++.-+.-|.|++||+.++.......-..+++-..+......++......+
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 255788999999999999999999999999987776666666666655555544444433333
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.08 E-value=0.12 Score=51.78 Aligned_cols=179 Identities=7% Similarity=0.044 Sum_probs=104.3
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc----C--CCceeEEEE---ecCCCc
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPH 161 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~ 161 (737)
...-.-.+++|.+.. +.++++.-..++|..|+....... .+ .+.. . ...+..|.| .|. +.
T Consensus 10 ~~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-gr 78 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KR 78 (334)
T ss_dssp CTTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CE
T ss_pred CcccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCC-Cc
Confidence 334455688999863 444555557999999998632110 01 1111 0 113578999 674 56
Q ss_pred EEEEEe-------------CCCcEEEEEcC---CCCCCCCCCCCCCccceEEEeccCCceeeccC-CCCCccceEEEEEe
Q 004685 162 VVWSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDIS 224 (737)
Q Consensus 162 ~l~s~s-------------~Dg~I~vwdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s 224 (737)
++++.. .+..|..+|+. +++.. ...++..-. ..+.. ..........++..
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~-~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQ-DEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHH-HHHHHHHSSCCEEEEEEEEC
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCcccc-ccccccccccccCCceeEEC
Confidence 666433 15779999998 55532 111111000 00000 00012357899999
Q ss_pred cCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeE
Q 004685 225 STRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (737)
Q Consensus 225 p~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v 303 (737)
++ ++..++++.. +.|..++.... .+..+....+ ........+.|+++|+|..|++....|.+
T Consensus 146 ~~-GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~---------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 146 RD-GNSYVAFALGMPAIARVSADGK-TVSTFAWESG---------------NGGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp TT-SCEEEEEEESSCEEEEECTTSC-CEEEEEECCC---------------CSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred CC-CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCC---------------CcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 97 6888888887 77777766533 2221111000 01111237789999999999999889999
Q ss_pred EEEEcCC
Q 004685 304 YLMDVNH 310 (737)
Q Consensus 304 ~iwd~~~ 310 (737)
..+|+.+
T Consensus 209 ~~fD~~~ 215 (334)
T 2p9w_A 209 TAFDVSK 215 (334)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9999884
No 292
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.03 E-value=0.27 Score=54.35 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 317 (737)
.+..++.++.|+.++.||.++++.+-..
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 4667888999999999999998754443
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.01 E-value=0.51 Score=54.06 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEE
Q 004685 53 VNAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLF 122 (737)
Q Consensus 53 V~~l~~s~~g~~lasgs~d-----g~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iw 122 (737)
...++|+|||+.|+....| ..|.++++.++.. ...+..........+.|+|+ +.+|+..+. ...|.++
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEE
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEE
Confidence 3468899999887766654 3688889887642 22331123345678899999 677665542 3457788
Q ss_pred ecCCCCCCCCCCCCCCC-ceee-ccCCCceeEEEEecCCCcEEEEEeCC--C--cEEEEEcCC
Q 004685 123 NLSRFSGRGLDDNAITP-SALY-QCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ 179 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~-~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D--g--~I~vwdl~~ 179 (737)
|+...... . +..+ ........++.|+. ++.+++....+ + .|..+|+.+
T Consensus 301 d~~~~~~~--------~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 301 DLRKGNAH--------NTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSSCTTC--------CCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred ECCCCCCC--------ceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 88753211 1 0212 22344556666554 55566565554 2 455666543
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.98 E-value=0.31 Score=48.89 Aligned_cols=169 Identities=10% Similarity=0.053 Sum_probs=102.0
Q ss_pred ecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEccc----C--ccceEEEEE---eeCCCCCEEEEEE-
Q 004685 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETG----H--SANVFCTKF---VPETSDELVVSGA- 114 (737)
Q Consensus 46 l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~----h--~~~V~~v~~---sp~~~~~~l~sgs- 114 (737)
+.+...--.+++|++... ++++.-..++|..||...+......... . ...+..|.| .|+ +.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcc
Confidence 444444556789988555 4455547899999999865433332121 1 124689999 576 56776543
Q ss_pred ------------CCCcEEEEecC---CCCCCCCCCCCCCCceeecc-----------CCCceeEEEEecCCCcEEEEEeC
Q 004685 115 ------------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQC-----------HTRRVKKLAVEVGNPHVVWSASE 168 (737)
Q Consensus 115 ------------~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~p~~~~~l~s~s~ 168 (737)
.+..|..||+. +..... ...+.. -......++..+ .++..++++.
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~ 156 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFAL 156 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECC-CCCEEEeCCC
Confidence 26779999988 432110 111111 112478999999 5677778887
Q ss_pred C-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685 169 D-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 169 D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
- +.|...+..... ...+.+... ........+.|+++|++ ++|++....+.|..+|++
T Consensus 157 ~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 157 GMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECS
T ss_pred CCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCC
Confidence 7 776666654331 111211110 11123457899999974 666666669999999988
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.89 E-value=0.051 Score=61.74 Aligned_cols=166 Identities=9% Similarity=0.031 Sum_probs=98.3
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-CcEEEEecCCCCC
Q 004685 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSG 129 (737)
Q Consensus 52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iwd~~~~~~ 129 (737)
....|++.+ .+.++++-...+.|.++++........+ .........|++.|.. +.++++-... +.|..+++.....
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCe
Confidence 345688885 4455565566789999998765433333 2233456788999874 4455443333 6777776653111
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
.......-.....|+|+|.++.++++-+..+.|..+++..... ..+ .
T Consensus 532 ----------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~-----------~ 578 (699)
T 1n7d_A 532 ----------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTI-----------L 578 (699)
T ss_dssp ----------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEE-----------C
T ss_pred ----------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEE-----------E
Confidence 1111112234578999997777777777788999999864321 111 1
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (737)
..........++++.. ..++++....+.|..+|..+++.+..+
T Consensus 579 ~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred ecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 1001112234455554 357777777889999998777655554
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.84 E-value=1.8 Score=48.03 Aligned_cols=202 Identities=7% Similarity=-0.002 Sum_probs=119.6
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
..+.+|+|.+.+. ++++-...+.|+.++++.......+ ...-.....+++.+.+ ++++++-...+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~- 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM- 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence 3467899998554 4445556788999998764433333 3333567789998753 5666666677899999887421
Q ss_pred CCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
...+ ...-.....|+++|..+.++++-. ....|...++..... ..+..
T Consensus 426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~-------- 475 (619)
T 3s94_A 426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLVN-------- 475 (619)
T ss_dssp ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEEe--------
Confidence 1222 223456789999996666665542 235676666654321 11110
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
......+.+++++..+.++++=+..+.|..+++..... ..+.. .. .. ....+++
T Consensus 476 -----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~-------------~~---l~----~P~glav 529 (619)
T 3s94_A 476 -----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RVLVE-------------DK---IP----HIFGFTL 529 (619)
T ss_dssp -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEEE-------------CC---CC----SSCCEEE
T ss_pred -----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EEEec-------------cC---CC----CcEEEEE
Confidence 11245688999987555555555667899998864321 11100 00 00 1234555
Q ss_pred cCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004685 288 SPNGEEVLLSYS-GEHVYLMDVNHAGG 313 (737)
Q Consensus 288 sp~g~~l~~g~~-dg~v~iwd~~~~~~ 313 (737)
..+ +|+.+.. .+.|...|..++..
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred ECC--EEEEeecCCCeEEEEEcCCCce
Confidence 433 5666655 67888888888743
No 297
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.69 E-value=1.3 Score=42.75 Aligned_cols=167 Identities=10% Similarity=0.096 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEEc-----ccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~---~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw 122 (737)
...-.|++.+++.++++.-.++.+.++++..... +.... .........++|.|. ++.|.++.......||
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence 4567888888888777766778899998765432 22221 123455789999998 4566555555455555
Q ss_pred ecCCCCCCCCCCCCCCCceee-------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685 123 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~ 195 (737)
.+...... ..+..+ ..+...+.+++++|..+++++.....+.+..+|..... .
T Consensus 148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~ 207 (255)
T 3qqz_A 148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I 207 (255)
T ss_dssp EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence 55410000 001111 11234578999999888888888888999999976431 1
Q ss_pred EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
..+.+..+. ..........-.|+|.++ ++++++ +..+.++.|..
T Consensus 208 ~~~~L~~g~----~~l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 208 GEMSLTKGS----RGLSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEECSTTG----GGCSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred EEEEcCCcc----CCcccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence 222222111 001111235678999997 565555 66677766643
No 298
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.63 E-value=0.12 Score=54.87 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=90.9
Q ss_pred ceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---
Q 004685 95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--- 170 (737)
Q Consensus 95 ~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--- 170 (737)
....|+++| + +..|..+...+.|+.+|+.... +..+.........++|++++..++++...++
T Consensus 138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 357889997 4 2445555444788888887422 3333334556889999994432554444322
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 171 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 171 -~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
.+.+++. .+... .... +.. ......++++|+++.++++-..++.|..|+.....
T Consensus 205 ~~v~~~~~-~g~~~---------~~~~-----------l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 205 PNNYILTR-ESGFK---------VITE-----------LTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEEEEEG-GGTSC---------SEEE-----------EEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEeC-CCcee---------eeee-----------ecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 2333332 22210 0000 100 12346788999556777777778899999987543
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
...... .+. ......++|+|+|++|+.+.. .+.|..++...
T Consensus 260 ~~~~~~-------------------~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 260 TTPLFT-------------------IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEEE-------------------CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEE-------------------cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 110000 000 113567999999997666654 78999988764
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.97 E-value=3.6 Score=41.97 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEc--ccCccceEEEEEeeC---CCCCEEEEEECC-----Cc
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE 118 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~--~~h~~~V~~v~~sp~---~~~~~l~sgs~d-----g~ 118 (737)
.....|+|.|+|+++++ ..+|.|.+++ .++. +..+. .........|+|+|+ . +.++++-... +.
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence 34678999999996555 5569999998 3432 22220 122456899999996 3 4555554433 56
Q ss_pred EEEEecC
Q 004685 119 VRLFNLS 125 (737)
Q Consensus 119 I~iwd~~ 125 (737)
|..|+..
T Consensus 107 v~r~~~~ 113 (352)
T 2ism_A 107 VVRLRHL 113 (352)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7777765
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.87 E-value=0.9 Score=48.09 Aligned_cols=173 Identities=9% Similarity=0.034 Sum_probs=98.1
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCC
Q 004685 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFS 128 (737)
Q Consensus 52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~ 128 (737)
....++++| +|.++++-..++.|+.+|..++.....+ ..+....-..++|+|+ ++ ++++-...+.|..++.....
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd--G~~LYvad~~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT--GDWAYIIYNGKHCIYRVDYNRET 306 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT--SSEEEEEETTTTEEEEEEBCTTT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC--CCEEEEEeCCCCEEEEEeCCCCC
Confidence 456788999 7777777667789999999877653332 1122223457999999 67 55555667889998876322
Q ss_pred CCCCCCCCCCCceeecc---------------CCCceeEEEE---------ecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685 129 GRGLDDNAITPSALYQC---------------HTRRVKKLAV---------EVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~---------------h~~~v~~l~~---------~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~ 184 (737)
+.. .....+.+ .-.....+++ .+ ++.++++-.....|+.++. .+...
T Consensus 307 ~~~------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~v~- 377 (433)
T 4hw6_A 307 GKL------AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGRVT- 377 (433)
T ss_dssp CCB------CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSEEE-
T ss_pred ccc------CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCCEE-
Confidence 110 00001111 1234567888 44 5567766667788888874 22210
Q ss_pred CCCCCCCccceEEEecc----CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685 185 PAGSSHQECRNILLDLR----CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (737)
Q Consensus 185 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~ 246 (737)
.+.... .+.................++++|.++.++++=..+.+|+.++++
T Consensus 378 -----------t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 -----------TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -----------EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -----------EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 011000 000000000011223567899995456677776777889888764
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.81 E-value=2.9 Score=41.50 Aligned_cols=93 Identities=8% Similarity=0.077 Sum_probs=48.0
Q ss_pred cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEEcccCccce-EEEEEe
Q 004685 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANV-FCTKFV 102 (737)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~s 102 (737)
..+..++....+...+..+......-.++. .++.+++.|+.+ ..+.+||..+.+-...- ....... .+++.
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~- 99 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL-GPPTPRDSLAACA- 99 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE-CCSSCCBSCEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC-CCCccccceeEEE-
Confidence 344455544444444433332222222222 256777777754 67889999887643322 1111111 12222
Q ss_pred eCCCCCEEEEEECC------CcEEEEecCC
Q 004685 103 PETSDELVVSGAGD------AEVRLFNLSR 126 (737)
Q Consensus 103 p~~~~~~l~sgs~d------g~I~iwd~~~ 126 (737)
-+ +.+++.|+.+ ..+.+||+..
T Consensus 100 ~~--~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 100 AE--GKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp ET--TEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred EC--CEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 24 5677777765 4588888875
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.81 E-value=3.8 Score=41.22 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=102.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE-EEecCCCC
Q 004685 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR-LFNLSRFS 128 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~-iwd~~~~~ 128 (737)
.+.+..|.+.+++..++.+ .++.|.. ..+.++.-..........+..+++.|+ +.+++.+. +|.+. -+|-.
T Consensus 121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~-~G~~~~S~d~g--- 192 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSS-RGSFYSTWEPG--- 192 (327)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEET-TSSEEEEECTT---
T ss_pred CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEEC-CCcEEEEeCCC---
Confidence 3457788887777766655 4555432 223444333332445667899999987 56666554 44443 33321
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (737)
+.. +..+ -......+..+.+.++ +.++ .++.+|.+.+.+...++. |. .+
T Consensus 193 G~t-----W~~~--~~~~~~~~~~~~~~~~-g~~~-~~~~~G~~~~s~~D~G~t---------------W~-------~~ 241 (327)
T 2xbg_A 193 QTA-----WEPH--NRTTSRRLHNMGFTPD-GRLW-MIVNGGKIAFSDPDNSEN---------------WG-------EL 241 (327)
T ss_dssp CSS-----CEEE--ECCSSSCEEEEEECTT-SCEE-EEETTTEEEEEETTEEEE---------------EC-------CC
T ss_pred CCc-----eeEC--CCCCCCccceeEECCC-CCEE-EEeCCceEEEecCCCCCe---------------eE-------ec
Confidence 110 1111 1234567888998884 4554 455678777664221210 00 00
Q ss_pred cCC-CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685 209 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (737)
Q Consensus 209 ~~~-~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 287 (737)
... ......+.++.+.++ +.+++++ .++.| ++....++.-..+.. . ... ...+.++.|
T Consensus 242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~----------------~-~~~-~~~~~~v~~ 300 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVD----------------V-KKV-PSNFYKILF 300 (327)
T ss_dssp BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGG----------------G-TTS-SSCCCEEEE
T ss_pred cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCc----------------c-CCC-CCCeEEEEE
Confidence 000 011235778888875 4555554 46766 344443322111100 0 000 013677888
Q ss_pred cCCCCEEEEEeCCCeEEEEEc
Q 004685 288 SPNGEEVLLSYSGEHVYLMDV 308 (737)
Q Consensus 288 sp~g~~l~~g~~dg~v~iwd~ 308 (737)
.+++ .+++++.+|.|.-++-
T Consensus 301 ~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EETT-EEEEECSTTEEEEECC
T ss_pred ECCC-ceEEEcCCceEEEEcC
Confidence 7555 4777778888877654
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.65 E-value=1.1 Score=47.91 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=97.3
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccC---ccceEEEEE-------eeCCCCCEEEEEECCC-c
Q 004685 52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKF-------VPETSDELVVSGAGDA-E 118 (737)
Q Consensus 52 ~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h---~~~V~~v~~-------sp~~~~~~l~sgs~dg-~ 118 (737)
....|+|+|. ++++++-...+.|++.|+.++.....+ ... ......++| +++ +..|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCC
Confidence 3568999983 445555555578999999887765544 221 235899999 998 67555555443 2
Q ss_pred ------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC-------CCCCCCC
Q 004685 119 ------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPP 185 (737)
Q Consensus 119 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~-------~~~~~~~ 185 (737)
|.+++... ++..... .....+.. ......++++|+++.++++-..++.|..+|+. ++..-..
T Consensus 217 ~~~~~~V~~i~r~~-~G~~~~~---~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 217 GDESPSVYIIKRNA-DGTFDDR---SDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp GGGEEEEEEEECCT-TSCCSTT---SCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred cccCceEEEEecCC-CCceeec---ccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 55555221 1111000 00012221 12346788999777888888888899999997 4432000
Q ss_pred CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc-EEEEEeCCCcEEEEECC
Q 004685 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR 246 (737)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~t~s~Dg~i~iwd~~ 246 (737)
...........+.. . ........++|+|++ + ++++-.....|+.++..
T Consensus 292 ~~~~~~g~~~~l~~-----------~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFT-----------I-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEE-----------C-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEe-----------c-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecC
Confidence 00000000001111 1 112345789999985 5 45555667889987654
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.58 E-value=2.5 Score=41.82 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=34.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECCC-----cEEEEecCC
Q 004685 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDA-----EVRLFNLSR 126 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~dg-----~I~iwd~~~ 126 (737)
++.+++.|+.+ ..+.+||..+.+-...- ...... -.+++.. + +.+++.|+.++ .+.+||+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-NMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCC-CCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCC
Confidence 66777777754 35888998877543221 111111 1122222 3 57778787653 467788764
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.32 E-value=0.62 Score=48.24 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------EEEEEccc-----CccceEEEEEeeCCC-CCEEEEE
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPETS-DELVVSG 113 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~------------~~~~~~~~-----h~~~V~~v~~sp~~~-~~~l~sg 113 (737)
.|..+..+|+|++||..+. ..|.|-.+..+. ....+.-+ ...+|..+.|+|-+. +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5778999999999998865 588988887321 11223111 246799999999641 4689999
Q ss_pred ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEE
Q 004685 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD 176 (737)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwd 176 (737)
..|+.|++||+.........-+.......+......|.+++|.+ ++-.|+..+ ..|.|.-..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 99999999999863221110000001112222336788999988 555555544 667666543
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.24 E-value=4 Score=40.28 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCe---EEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecCC
Q 004685 61 KGSLLISGSDD-----THINVWSYSSRK---LLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR 126 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~---~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~ 126 (737)
++.+++.|+.+ ..+.+||..+.+ -...- ...... -.+++.. + +.+++.|+.+ ..+.+||+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCC
Confidence 56777777754 468899988765 22211 111111 1122222 4 5677777654 3577888765
Q ss_pred CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
..- ..+..+...... .++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 138 ~~W--------~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 138 DQW--------SMLGDMQTAREG-AGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TEE--------EEEEECSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CeE--------EECCCCCCCccc-ceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 321 111111111111 122222 44677777654 357777776543
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.07 E-value=5.1 Score=40.79 Aligned_cols=202 Identities=12% Similarity=0.113 Sum_probs=107.7
Q ss_pred ceEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeE-EEEEccc-----CccceEEEEEeeCCCCC--E
Q 004685 52 CVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKL-LHSIETG-----HSANVFCTKFVPETSDE--L 109 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs------------~dg~V~vwd~~~--~~~-~~~~~~~-----h~~~V~~v~~sp~~~~~--~ 109 (737)
..-.|.+.|+|..+++++ .+|.|.++|..+ .+. ...+ .+ ..-....+.+.++.++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455677888876555552 689999999873 222 1122 11 23467888887742233 3
Q ss_pred EEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeC---C--------------
Q 004685 110 VVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE---D-------------- 169 (737)
Q Consensus 110 l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~---D-------------- 169 (737)
+++-.. +.+|.+|++....... ..+..+.+. -...+.+.+.+ ++.++++... |
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence 444333 5778888887532211 112233221 23578899988 5566655431 1
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (737)
Q Consensus 170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~ 249 (737)
|.|..+|. ++ ...+. ......+.++|+|++..++++-+..+.|..|++....
T Consensus 203 g~vyr~d~--~~-----------------------~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 203 SFVTYYSP--ND-----------------------VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp EEEEEECT--TC-----------------------CEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cEEEEEEC--Ce-----------------------EEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 22222222 11 11110 1123468999999854455555677899999986321
Q ss_pred CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCC-CeEEEEEc
Q 004685 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDV 308 (737)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~d-g~v~iwd~ 308 (737)
.+.. .+.+ .+ ....-.+++++ +|.+.+++..+ +.|..|+.
T Consensus 255 ~l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 255 TLTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp CEEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred cEec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 1110 0111 00 11366789999 59877766544 34444443
No 308
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.18 E-value=3.9 Score=49.05 Aligned_cols=234 Identities=10% Similarity=0.100 Sum_probs=126.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCC
Q 004685 58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (737)
Q Consensus 58 ~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 137 (737)
.+|..+.||.=. ..++.|+|+++...++.+. ...+|..-.|-.. +.|+-.+ +..|.-|++....
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~s--------- 136 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES--------- 136 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCCC---------
Confidence 456666666554 5789999999988887762 4567877788765 4554443 5689999996411
Q ss_pred CCceeeccC----CCceeEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685 138 TPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (737)
Q Consensus 138 ~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
.|...+..| ...|..-..+++..-++++|- ..|.+.+|.+...... ...+|..+- ..+
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~------- 204 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQF------- 204 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---hee-------
Confidence 334444444 345666666774433443432 3477888887765422 111111110 000
Q ss_pred ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (737)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 286 (737)
..++...+..-++|..... ..+.++|.++... .....+.. .....+.+.. .... -...+.
T Consensus 205 --~~~~~~~~~~l~~f~~~~~-------~g~kLhi~Ei~~~~~~~~~f~k-----k~~~~~~~~~----~~~D-fpv~~~ 265 (1630)
T 1xi4_A 205 --KMEGNAEESTLFCFAVRGQ-------AGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPPE----AQND-FPVAMQ 265 (1630)
T ss_pred --ccCCCCCCceEEEEEEecC-------CCceEEEEecCCCccCCCCCcc-----ccccccCCcc----cccC-cceEEE
Confidence 0001111111122222111 1268999988543 11111110 0111111111 0111 245688
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (737)
Q Consensus 287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (737)
.++.-..++.-+.-|.|++||+.++.......-.+.++-..+......++..
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~ 317 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 317 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEE
Confidence 8998889999999999999999998866655555555555555444444443
No 309
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.11 E-value=7 Score=38.70 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=52.0
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecC
Q 004685 61 KGSLLISGSD----D-----THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLS 125 (737)
Q Consensus 61 ~g~~lasgs~----d-----g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~ 125 (737)
++.+++.|+. + ..+.+||..+.+-...- ...... -.+++.. + +.+++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMSVPRNRIGVGVI-D--GHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCSSCCBTCEEEEE-T--TEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCCcCccccEEEEE-C--CEEEEEcCCCCCcccccEEEECCC
Confidence 5677777765 2 46888998877533221 111111 1122222 3 4677777643 357888887
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
+..-. .+..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 146 ~~~W~--------~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 146 RDEWH--------LVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TTEEE--------ECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCeEe--------ECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 53211 11111111111122222 44677777654 357777776543
No 310
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.70 E-value=9 Score=38.39 Aligned_cols=160 Identities=12% Similarity=0.105 Sum_probs=85.8
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (737)
Q Consensus 48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~ 127 (737)
++...+.++.+.+++.+++.+...+.++-+|- .++.-..+.......+..+.+.++ +.++ .++.+|.+++.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~G~~~~s~~D~- 234 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPD--GRLW-MIVNGGKIAFSDPDN- 234 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTT--SCEE-EEETTTEEEEEETTE-
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCC--CCEE-EEeCCceEEEecCCC-
Confidence 34567899999999888877654433344442 122222222345567889999887 5554 555678877764221
Q ss_pred CCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685 128 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (737)
Q Consensus 128 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (737)
+.. +..+..- ......+.++.+.+ ++.+++++ .++.| ++....++.= .
T Consensus 235 -G~t-----W~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~tW----------------------~ 283 (327)
T 2xbg_A 235 -SEN-----WGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQTW----------------------Q 283 (327)
T ss_dssp -EEE-----ECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSSC----------------------E
T ss_pred -CCe-----eEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCccc----------------------E
Confidence 100 0001100 01223578888887 44566554 46766 3444433310 0
Q ss_pred eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (737)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~ 245 (737)
.+.........+.++.|.++ ..+++++.+|.|.-++-
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 284 QDVDVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT 320 (327)
T ss_dssp ECGGGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred EcCccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence 01111111235677888753 35667777898777654
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.66 E-value=9.8 Score=38.70 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=45.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEc--ccCccceEEEEEeeC---CCCCEEEEEEC---C----C
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D----A 117 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~--~~h~~~V~~v~~sp~---~~~~~l~sgs~---d----g 117 (737)
.....|+|.|+|+++++ ..+|.|+++|. .++ .+..+. .........|+|+|+ . +.++++-.. + .
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcce
Confidence 45678999999985555 55699999974 444 222220 112356889999996 3 455555442 3 5
Q ss_pred cEEEEecCC
Q 004685 118 EVRLFNLSR 126 (737)
Q Consensus 118 ~I~iwd~~~ 126 (737)
.|..|+...
T Consensus 106 ~v~r~~~~~ 114 (354)
T 3a9g_A 106 RVIRGRLDG 114 (354)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEECC
Confidence 677777653
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.36 E-value=9.5 Score=37.82 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=34.6
Q ss_pred EcCCCCEEEEEeC-----C------CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC--------C
Q 004685 58 WNSKGSLLISGSD-----D------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD--------A 117 (737)
Q Consensus 58 ~s~~g~~lasgs~-----d------g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d--------g 117 (737)
...++.+++.|+. . ..+.+||..+.+-.. +....... -.+++.. + +.+++.|+.+ .
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence 3457788888873 1 127788988775432 21111111 1122222 3 4677777632 4
Q ss_pred cEEEEecCC
Q 004685 118 EVRLFNLSR 126 (737)
Q Consensus 118 ~I~iwd~~~ 126 (737)
.+.+||+.+
T Consensus 118 ~~~~~d~~~ 126 (315)
T 4asc_A 118 SVMCYDRLS 126 (315)
T ss_dssp CEEEEETTT
T ss_pred eEEEECCCC
Confidence 588888875
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.30 E-value=5.3 Score=40.65 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=25.1
Q ss_pred eeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685 282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (737)
Q Consensus 282 i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~ 310 (737)
-+.++|+||+++|+.+.. .+.|..|++..
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 678999999998888875 78999999975
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.02 E-value=8 Score=40.05 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=96.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC---ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC-C
Q 004685 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD-D 134 (737)
Q Consensus 59 s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~ 134 (737)
+.+|..|+.+-. +.||.-++.....-+.+...+ -..|..+..+|+ |++||..+ +..|.|-.+..+.....+ .
T Consensus 29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCcccc
Confidence 456666666643 688888877443333332221 236788999999 78888875 568888888742211110 0
Q ss_pred --CCCCCceeecc------CCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685 135 --NAITPSALYQC------HTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (737)
Q Consensus 135 --~~~~~~~~~~~------h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (737)
...+ .+.+.- ...+|..+.|+|-+. ..|++-..|+.|++||+......+. ......+
T Consensus 105 ~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-----------~L~k~~~- 171 (452)
T 3pbp_A 105 IQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-----------VLNKPNN- 171 (452)
T ss_dssp HHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-----------EESCCCS-
T ss_pred cccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-----------chhcccc-
Confidence 0011 111111 257799999999543 3888999999999999997432211 1110000
Q ss_pred eeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEE
Q 004685 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLY 243 (737)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iw 243 (737)
..........+.+++|.++ +-.|.+.+ .+|.|+-.
T Consensus 172 ---~fg~d~~~~ev~S~~Fg~~-~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ---SFGLDARVNDITDLEFSKD-GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---EEESCSSCCCEEEEEECTT-SSCEEEEECTTSCEEEEE
T ss_pred ---ccCCCcccceEEEEEEcCC-CcEEEEEecCCCCCEEEE
Confidence 0011223367889999985 56666644 66776554
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.11 E-value=6 Score=38.97 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-------CcEEEEecCCCC
Q 004685 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS 128 (737)
Q Consensus 61 ~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I~iwd~~~~~ 128 (737)
++.+++.|+.++ .+.+||..+.+-...-.......-.+++.. + +.+++.|+.+ ..+.+||+....
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 567777777553 477889887654332100111111222222 3 4677776643 347888887532
Q ss_pred CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
- ..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 185 W--------~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 W--------TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp E--------EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred E--------EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 1 111111111111122222 44777777764 357788876653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.96 E-value=7.7 Score=38.10 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=54.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-----CcEEEEecCCCCCC
Q 004685 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR 130 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~~~~~ 130 (737)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. + +.+++.|+.+ ..+.+||+.+..-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W- 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHW- 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE-
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcE-
Confidence 56777777643 3588899887654322101111111122222 4 5677777754 4588888875321
Q ss_pred CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 188 -------~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 188 -------TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp -------EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -------EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 111111111111122222 44677777764 457888877653
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=90.68 E-value=7.3 Score=38.40 Aligned_cols=106 Identities=8% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCCCCCEEEEEEC---------CCcEEEEec
Q 004685 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAG---------DAEVRLFNL 124 (737)
Q Consensus 61 ~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~---------dg~I~iwd~ 124 (737)
++++++.|+.+ ..+.+||..+.+-...- ..... .-.+++. -+ +.+++.|+. -..+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SMLTQRCSHGMVE-AN--GLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEE-ET--TEEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCcCCcceeEEEE-EC--CEEEEECCCCCCCCcccccceEEEeCC
Confidence 66777777755 45889999887643321 11111 1112222 23 467777654 344788888
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
.+..- ..+..+...... .++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 177 ~~~~W--------~~~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 177 ATETW--------TELCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTTEE--------EEECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCeE--------EECCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 75321 111111111111 122222 44677777654 357778877653
No 318
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=90.54 E-value=7.9 Score=39.06 Aligned_cols=151 Identities=11% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCc---EEEEEeC---CCcEEEEEc
Q 004685 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---VVWSASE---DGTLRQHDF 177 (737)
Q Consensus 107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~---~l~s~s~---Dg~I~vwdl 177 (737)
..+++...+++-+.+||+.- +.++.+.. +.++.+..-|. ++. ++++... +.+|.+|++
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred ccEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 35677777788999999952 12444432 56777777661 111 3333333 578999987
Q ss_pred CCCCCCCCCCCCCCccceEEEeccCCceeeccCC--C--CCccceEEEEE--ecCCCc-EEEEEeCCCcEEEEECCC---
Q 004685 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP--P--KQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRM--- 247 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~i~~--sp~~~~-~l~t~s~Dg~i~iwd~~~--- 247 (737)
...... +. .+... + .....+..+|+ +|..+. ++++...+|.+..|++..
T Consensus 107 Dp~~~~-------------l~--------~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 107 DGKNGT-------------LQ--------SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp CTTTCC-------------EE--------ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred CCCCCc-------------ee--------eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence 432210 00 11000 0 11145566777 665443 688888889999999843
Q ss_pred CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (737)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~ 309 (737)
+.... +.++.|. + +..+..|+..+....|+++-.+..|..++..
T Consensus 166 g~~~~---------~lVR~f~---l------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 166 GYISG---------KKVRAFK---M------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp SCEEE---------EEEEEEE---C------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred Ccccc---------eEEEEec---C------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 21110 1111111 1 1147789999999999999999666555544
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.09 E-value=29 Score=41.47 Aligned_cols=178 Identities=11% Similarity=0.108 Sum_probs=99.1
Q ss_pred ccccccccccccccccce--eecccCCceEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCeEEEEEcc
Q 004685 27 NHSLQMHSSLVRRLSQER--ELEGHQGCVNAISW---NSK-GSLLISGS----------DDTHINVWSYSSRKLLHSIET 90 (737)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~---s~~-g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~ 90 (737)
...+++.+.. +++.+. .|.. .+.+.|++. ..+ ..+|+.|. ..|.|.+|++..++.......
T Consensus 806 ~s~i~lidp~--t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~ 882 (1158)
T 3ei3_A 806 VHNLLIIDQH--TFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK 882 (1158)
T ss_dssp EEEEEEEETT--TCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEeCC--CCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE
Confidence 3455555532 233332 3333 345556553 322 46888875 358899999875554333323
Q ss_pred cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (737)
Q Consensus 91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 170 (737)
..+++|++++--. | +|++|- ..+|++|++..... +..-..+-..|..+.... .+++++.|..-.
T Consensus 883 ~v~g~v~al~~~~---g-~Lla~i-g~~l~vy~l~~~~~----------L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 883 EVKGAVYSMVEFN---G-KLLASI-NSTVRLYEWTTEKE----------LRTECNHYNNIMALYLKT-KGDFILVGDLMR 946 (1158)
T ss_dssp EESSCEEEEEEET---T-EEEEEE-TTEEEEEEECTTSC----------EEEEEEECCCSCEEEEEE-ETTEEEEEESSB
T ss_pred EcCCcCEEEeeeC---C-EEEEEc-CCEEEEEECCCCce----------EEEEeeccccEEEEEEec-cCCEEEEEEhhh
Confidence 4567888877443 4 454443 57899999975221 221011111133222222 346777888777
Q ss_pred cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (737)
Q Consensus 171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~ 247 (737)
.|.++..+.... .+ ..+. ......+++++.|-.+ ..++.+..+|.|.++....
T Consensus 947 Sv~~~~y~~~~~-------------~L--------~~~a-~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 947 SVLLLAYKPMEG-------------NF--------EEIA-RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CEEEEEEETTTT-------------EE--------EEEE-ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred eEEEEEEEcCCC-------------eE--------EEEE-eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence 887766543220 00 0111 1123467888888764 4788899999999998764
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.85 E-value=15 Score=34.29 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=52.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685 62 GSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (737)
Q Consensus 62 g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 135 (737)
..+|+....| +|+.=....+. ....+-..-=..+.+++|+|+ +.+.+. .+|.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~------ 72 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN------ 72 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT------
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc------
Confidence 4456666666 65554444332 112221111246789999997 676666 667655444432111
Q ss_pred CCCCceeeccCCCc--------eeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685 136 AITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (737)
Q Consensus 136 ~~~~~~~~~~h~~~--------v~~l~~~p~~~~~l~s~s~Dg~I~vwdl 177 (737)
....+-... -.++.|.| ++.+.++ .||.|.-++-
T Consensus 73 -----~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 73 -----DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp -----CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred -----ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 111111222 36789998 5566655 5698887764
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.20 E-value=24 Score=35.73 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc------ccCccceEEEEEeeC---CCCCEEEEEEC-------
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPE---TSDELVVSGAG------- 115 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~------~~h~~~V~~v~~sp~---~~~~~l~sgs~------- 115 (737)
....|+|.|+|+.|+.+...|.|++++.. +.....+. .........|+|+|+ . +.++++-..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCCCc
Confidence 46789999999934445567999999854 33211110 122346789999994 2 555555433
Q ss_pred CCcEEEEecC
Q 004685 116 DAEVRLFNLS 125 (737)
Q Consensus 116 dg~I~iwd~~ 125 (737)
...|..|++.
T Consensus 97 ~~~v~r~~~~ 106 (353)
T 2g8s_A 97 GTAVGYGRLS 106 (353)
T ss_dssp EEEEEEEEEC
T ss_pred eeEEEEEEEC
Confidence 2346556654
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=87.74 E-value=12 Score=36.81 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=53.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECC-----CcEEEEecCCCCC
Q 004685 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSG 129 (737)
Q Consensus 61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~~~~ 129 (737)
++++++.|+.+ ..+.+||..+.+-...-. ...... .+++.. + +.+++.|+.+ ..+.+||+....-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 56777777643 358889988765432210 111111 122222 3 5677777754 4588888875321
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~ 181 (737)
. .+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 197 ~--------~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 197 R--------MITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp E--------ECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred e--------eCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 1 11111111111122222 44677777664 457888877653
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.67 E-value=11 Score=37.42 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=53.4
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeEEEEEcccCccce-EEEEEeeCCCCCEEEEEEC-C-----CcEEEEecC
Q 004685 61 KGSLLISGSDD--------THINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAG-D-----AEVRLFNLS 125 (737)
Q Consensus 61 ~g~~lasgs~d--------g~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~-d-----g~I~iwd~~ 125 (737)
++.+++.|+.+ ..+.+||..+.+-...- ....... .+++. -+ +.+++.|+. + ..+.+||+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYVVYGHTVLS-HM--DLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEE-ET--TEEEEECCBCTTSCBCCCEEEEETT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCcccceeEEE-EC--CEEEEEeCCCCCCcccceEEEEeCC
Confidence 56677777632 45889999877533211 1111111 22222 33 467777775 2 458888887
Q ss_pred CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 004685 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 181 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-----~I~vwdl~~~~ 181 (737)
+..- ..+..+......-.++.+ ++.+++.|+.++ .+.+||+.+.+
T Consensus 174 ~~~W--------~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 174 KFEW--------KELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEE--------EECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCeE--------EECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 5321 111111111111122222 447777777654 47777876653
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.97 E-value=25 Score=34.68 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=34.4
Q ss_pred EcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-------CcE
Q 004685 58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV 119 (737)
Q Consensus 58 ~s~~g~~lasgs~----dg-------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I 119 (737)
...++.+++.|+. ++ .+.+||..+.+-...-.......-.+++.. + +.+++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence 3457788888873 12 177888877654322100011111222222 3 4677777754 247
Q ss_pred EEEecCC
Q 004685 120 RLFNLSR 126 (737)
Q Consensus 120 ~iwd~~~ 126 (737)
.+||+.+
T Consensus 130 ~~yd~~~ 136 (318)
T 2woz_A 130 LCYDPVA 136 (318)
T ss_dssp EEEETTT
T ss_pred EEEeCCC
Confidence 7788765
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.51 E-value=26 Score=34.53 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=33.7
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEEC------CCcEEEEecCC
Q 004685 61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAG------DAEVRLFNLSR 126 (737)
Q Consensus 61 ~g~~lasgs~d-------g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~------dg~I~iwd~~~ 126 (737)
++.+++.|+.+ ..+.+||..+.+-...- ...... -.+++. .+ +.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56777777754 34778898876543321 111111 112222 33 467777764 23588888875
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.37 E-value=41 Score=33.67 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECC
Q 004685 61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 61 ~g~~lasgs~-d---------g~V~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
++++++.|+. + ..+.+||..+.+-...- ... .......+...+ +.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~p~~r~~~~~~~~~--~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM-SHAPMGMAGHVTFVHN--GKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS-CCCSSCCSSEEEEEET--TEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC-CCCCcccccceEEEEC--CEEEEEeCcC
Confidence 5677777765 2 46889999887543321 111 111112122244 5778888765
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=80.78 E-value=50 Score=33.24 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=46.4
Q ss_pred ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce----eeccCCCceeEEEEecC---CCcEEEE
Q 004685 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVWS 165 (737)
Q Consensus 93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~---~~~~l~s 165 (737)
-.....|+|.|+ +.+|++--..|.|++++...... ..+. ...........|+++|+ ++.+.++
T Consensus 31 L~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 31 LNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 456789999999 67777665589999887543211 0111 11223456789999984 3444433
Q ss_pred E--eCCCcEEEEEcCC
Q 004685 166 A--SEDGTLRQHDFRQ 179 (737)
Q Consensus 166 ~--s~Dg~I~vwdl~~ 179 (737)
- ..+..|.-|.+..
T Consensus 101 yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 101 FTSASDNRIVRMLYDE 116 (347)
T ss_dssp EECSSSEEEEEEEBCT
T ss_pred EecCCCCEEEEEEeCC
Confidence 2 2345666666654
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=80.39 E-value=51 Score=33.14 Aligned_cols=63 Identities=8% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCceEEEEEcCC---CCEEE-EEeCC-----CcEEEEECCCCe-----EE-EEEc--ccCccceEEEEEeeCCCCCEEEE
Q 004685 50 QGCVNAISWNSK---GSLLI-SGSDD-----THINVWSYSSRK-----LL-HSIE--TGHSANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 50 ~~~V~~l~~s~~---g~~la-sgs~d-----g~V~vwd~~~~~-----~~-~~~~--~~h~~~V~~v~~sp~~~~~~l~s 112 (737)
......|+|+|+ +..|. +-... +.|..|+...+. .+ ..+. .........++|.|+ |.++++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence 356789999998 44444 43322 578888876431 11 1231 111123468999999 677666
Q ss_pred EE
Q 004685 113 GA 114 (737)
Q Consensus 113 gs 114 (737)
-+
T Consensus 152 ~G 153 (352)
T 2ism_A 152 TG 153 (352)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=78.62 E-value=4.7 Score=37.71 Aligned_cols=108 Identities=11% Similarity=-0.049 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~ 125 (737)
.+..|+|+|+|.+.+. .+|.+.-.+..+... -..+-..--....++.|.|+ +.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~--G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN--GYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT--SCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC--CCEEEe--CCCEEEEeCCC
Confidence 6779999999997777 667777666544211 11110001112478899998 677766 56888777643
Q ss_pred CCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685 126 RFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (737)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 173 (737)
+..... +...... ..--..+..|.+.| ++.+.+.. |+.+.
T Consensus 116 ~~~~~~-----Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDTDN-----WIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp CSTTCC-----HHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred cCCCCc-----eeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 211110 0000011 11124678999999 55665444 77754
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.83 E-value=4.1 Score=41.09 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe--eCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV--PETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP 139 (737)
Q Consensus 63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (737)
.+++.++.||.|.-.|..+|+...++......++....-. +.. +..++.. ..||.|..++...+..+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~-------- 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKL-------- 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEE--------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEe--------
Confidence 4788899999999999999999998843211233322111 111 2333333 578999888876432110
Q ss_pred ceeec--cCCCceeE---EEE-ec---CCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685 140 SALYQ--CHTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGSS 182 (737)
Q Consensus 140 ~~~~~--~h~~~v~~---l~~-~p---~~~~~l~s~s~Dg~I~vwdl~~~~~ 182 (737)
..... -...++.. ..+ .+ .....+++|+.+|++...|+++++.
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 00000 01122221 000 00 0235778999999999999999973
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=77.70 E-value=50 Score=36.96 Aligned_cols=110 Identities=8% Similarity=0.027 Sum_probs=57.1
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCeEEEEEcc------cCccceEEEEEee-CCCCCEEEEEECCC------cEEEE
Q 004685 60 SKGSLLISGSDD----THINVWSYSSRKLLHSIET------GHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF 122 (737)
Q Consensus 60 ~~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~------~h~~~V~~v~~sp-~~~~~~l~sgs~dg------~I~iw 122 (737)
.++.+++.|+.+ ..+.+||..+++....-.. .....-.+++..+ + +.+++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence 567777778753 4688899887654322100 0111122333332 4 57778877543 47778
Q ss_pred ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCC
Q 004685 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGS 181 (737)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~ 181 (737)
|+.+..- ..+..+..-.. -.+++... ++.+++.|+.++ .+.+||..+..
T Consensus 474 d~~t~~W--------~~~~~~p~~R~-~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 474 DMKTREW--------SMIKSLSHTRF-RHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp ETTTTEE--------EECCCCSBCCB-SCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE
T ss_pred eCCCCcE--------EECCCCCCCcc-cceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc
Confidence 8775321 11111111111 12223323 557777887654 68888887654
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=77.70 E-value=73 Score=33.40 Aligned_cols=63 Identities=13% Similarity=0.253 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEcc-----cCccceEEEEEeeC---CCCCEEEEEE
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIET-----GHSANVFCTKFVPE---TSDELVVSGA 114 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~-----~h~~~V~~v~~sp~---~~~~~l~sgs 114 (737)
...++|+|.|+|+++++-...+.|++++..+++. +..+.. ........|+|+|+ . +.++++-+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGT 99 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEe
Confidence 3567999999999777665445788888655543 222211 12456789999994 2 55555554
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=76.31 E-value=53 Score=33.05 Aligned_cols=60 Identities=5% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEEEE--e-ecCCCceEEEEecCCCCeEEEEe-cCCcEEEEcC
Q 004685 637 QRGDYIASGSDDGRWFIWEKQTGRLIKM--L-LGDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 698 (737)
Q Consensus 637 ~d~~~l~sgs~D~~i~iWd~~t~~~~~~--l-~gH~~~V~~v~~sp~~~~l~S~~-~Dg~i~lW~~ 698 (737)
.+|+++++.-..+.|...+++.++.+.. | .+--.++..|++.|||.++++.. .+| +||.+
T Consensus 287 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 287 WQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred cCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 3678888888888888888876654432 2 23345899999999999777543 455 44543
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=73.87 E-value=91 Score=32.64 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=42.9
Q ss_pred CCCEEEEecCCCcEEEEEcCc-cc-EE---EEeecCCCceEEEEecCCCC-eEEEEecCCcEE------EEcCCCCCCcc
Q 004685 638 RGDYIASGSDDGRWFIWEKQT-GR-LI---KMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIK------IWTPSASVPSI 705 (737)
Q Consensus 638 d~~~l~sgs~D~~i~iWd~~t-~~-~~---~~l~gH~~~V~~v~~sp~~~-~l~S~~~Dg~i~------lW~~~~~~~~~ 705 (737)
.+++++..-..+.|....++. +. .. ..|..--.+++.|++.|||. ++++.+..|.|. +|.++....++
T Consensus 368 ~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~ 447 (454)
T 1cru_A 368 ENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLI 447 (454)
T ss_dssp TTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEE
T ss_pred CCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceE
Confidence 355555555556666666653 32 11 22222236999999999997 777776667654 78776666555
Q ss_pred cc
Q 004685 706 VS 707 (737)
Q Consensus 706 ~~ 707 (737)
.+
T Consensus 448 ~~ 449 (454)
T 1cru_A 448 KF 449 (454)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=68.88 E-value=74 Score=31.72 Aligned_cols=50 Identities=8% Similarity=-0.022 Sum_probs=25.6
Q ss_pred CcEEEEECCCCeEEEEEcccCccce-EEEEEeeCCCCCEEEEEEC------CCcEEEEec
Q 004685 72 THINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAG------DAEVRLFNL 124 (737)
Q Consensus 72 g~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~------dg~I~iwd~ 124 (737)
..+.+||..+.+-...-.......- .+++.. + +.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-G--DKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-T--TEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-C--CEEEEEeeecCCCcccCceEEEEe
Confidence 4788999987653322101111111 233333 3 467777654 245677776
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=67.18 E-value=64 Score=36.07 Aligned_cols=110 Identities=8% Similarity=0.073 Sum_probs=58.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCCCCC
Q 004685 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRG 131 (737)
Q Consensus 61 ~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~~~~ 131 (737)
++.+++.|+.+ ..+.+||..+.+-...- ..... .-.+++...+ +.+++.|+.++ .+.+||+.+..-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~-~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~- 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK-SLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFK- 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC-CCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEE-
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC-CCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceE-
Confidence 67777777643 35788998876533221 11111 1122223234 67888887654 6889988753211
Q ss_pred CCCCCCCCcee---eccCCCceeEEEEecCCCcEEEEEeCC-------CcEEEEEcCCCC
Q 004685 132 LDDNAITPSAL---YQCHTRRVKKLAVEVGNPHVVWSASED-------GTLRQHDFRQGS 181 (737)
Q Consensus 132 ~~~~~~~~~~~---~~~h~~~v~~l~~~p~~~~~l~s~s~D-------g~I~vwdl~~~~ 181 (737)
.+.. +........++.+....+.+++.|+.+ ..+.+||+.+..
T Consensus 527 -------~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 527 -------DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp -------ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred -------EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1111 111111223355555335677777762 357888887765
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=67.05 E-value=1.1e+02 Score=30.73 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=36.0
Q ss_pred CceEEEEEcCC----CCEEEEEeC---C----CcEEEEECCCC-------eEE-EEEcccCccceEEEEEeeCCCCCEEE
Q 004685 51 GCVNAISWNSK----GSLLISGSD---D----THINVWSYSSR-------KLL-HSIETGHSANVFCTKFVPETSDELVV 111 (737)
Q Consensus 51 ~~V~~l~~s~~----g~~lasgs~---d----g~V~vwd~~~~-------~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~ 111 (737)
.....|+|+|+ +.+.++-+. + ..|..|+.... +.+ ..+..........++|.|+ |.+++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Lyv 150 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLYI 150 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEEE
Confidence 56889999997 444444332 3 56777877654 111 1121111223467999999 67777
Q ss_pred EEE
Q 004685 112 SGA 114 (737)
Q Consensus 112 sgs 114 (737)
+-+
T Consensus 151 t~G 153 (354)
T 3a9g_A 151 TTG 153 (354)
T ss_dssp ECC
T ss_pred EEC
Confidence 644
No 338
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=60.51 E-value=56 Score=34.40 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---EEEEEc----c----cCccceEEEEEeeC
Q 004685 52 CVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---LLHSIE----T----GHSANVFCTKFVPE 104 (737)
Q Consensus 52 ~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~---~~~~~~----~----~h~~~V~~v~~sp~ 104 (737)
..+.|+|.|+|. .|+.+...|.|++++..... .+..+. . ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999996 45556778999999754321 122221 1 11456889999985
No 339
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.36 E-value=22 Score=38.82 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=41.4
Q ss_pred ccCCCCEEEEecCC------------CcEEEEEcCcccEEEEeecC-CCceEEEEecCCCCeEEEE
Q 004685 635 LGQRGDYIASGSDD------------GRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 687 (737)
Q Consensus 635 ~s~d~~~l~sgs~D------------~~i~iWd~~t~~~~~~l~gH-~~~V~~v~~sp~~~~l~S~ 687 (737)
|+++|++++.-..+ ..+.+.+..+|++.+.|.++ ..+++.++|+||++.|+..
T Consensus 483 fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 78889877765432 34666678899999999998 5689999999999855544
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=56.54 E-value=1.5e+02 Score=28.90 Aligned_cols=105 Identities=8% Similarity=0.035 Sum_probs=57.4
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE--CCCcE
Q 004685 56 ISWNSKGSLLISGSDD--------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119 (737)
Q Consensus 56 l~~s~~g~~lasgs~d--------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I 119 (737)
--|+++|.+|+-+... ..|+..+++.++..... . .. +..|+++ ++.|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~---~~--~~~~s~~--g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-P---DP--CIYASLI--GNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-C---SC--EEEEEEE--TTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-c---CC--ccEEEEe--CCEEEEEeecCCCCc
Confidence 3467888888766432 46788888776533222 1 11 2367887 67777665 45555
Q ss_pred EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (737)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~ 181 (737)
.||.+...... ...+..+.. ..+++.+..++++......|...++..+.
T Consensus 130 ~Iy~~~~dGs~---------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 130 SLYRIRIDGEE---------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp EEEEEETTSCC---------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred eEEEEECCCCC---------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 55555432111 222322322 34556555555554445677777776543
No 341
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=56.06 E-value=51 Score=27.00 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=78.5
Q ss_pred hhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchh
Q 004685 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (737)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 444 (737)
.....++.....|. +..++..+..++...+.. ...+.+++.++...+ +...|+.++..++.++|....+.
T Consensus 15 ~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 15 EEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLM---EFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhhhhhHHH
Confidence 33445555555555 678888898888876554 456777777777644 45567888999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccCCCchh
Q 004685 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (737)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (737)
+.+...+..+++..++.........+.|....
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999888888888887654
No 342
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=55.99 E-value=1.7e+02 Score=29.23 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccC----ccceEEEEEeeCCCCCEEEEEE-------CCCc
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGH----SANVFCTKFVPETSDELVVSGA-------GDAE 118 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~~~l~sgs-------~dg~ 118 (737)
+.|.-=+|-.+ +.|+..+. ..|.-|+++.. ...+.| .-| ...|..-..+++ .+.++..+ -.|.
T Consensus 107 e~VvfWkWis~-~~L~lVT~-taVyHWs~~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 107 DDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp SCEEEEEECSS-SEEEEEES-SEEEEEESSTTCCCEEEE-ECCGGGTTCEEEEEEECTT--SCEEEEEEEEEETTEEEEE
T ss_pred CccEEEEecCC-CeEEEEcC-CcEEEEcccCCCCCceee-ecchhcccceEEEEEECCC--CCEEEEEeEeccCCcccee
Confidence 56666667543 44554443 48999999753 344445 333 345666666666 46554332 2477
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEec--CCCcEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~~l~s~s~---Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.+|..... ..+.+.+|...-..+.+.. ....+|..+.. .+.+++-++...... ....
T Consensus 182 mQLYS~er~-----------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~------~~~f 244 (365)
T 2xzh_A 182 MQLYSVDRK-----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPF 244 (365)
T ss_dssp EEEEETTTT-----------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT------CCCC
T ss_pred EEEEeeccc-----------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC------CCCc
Confidence 889988752 2566777755443333321 11123333332 258888888543100 0011
Q ss_pred ceEEEeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685 194 RNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~ 251 (737)
..... .+.+++ .......++..++.. ..+..-+.-|.|++||+.++..+
T Consensus 245 ~kk~v--------di~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 245 PKKAV--------DVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp CCEEE--------EECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEE
T ss_pred ccccc--------eeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEE
Confidence 11111 122222 234556788899864 68888899999999999998744
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.83 E-value=7.9 Score=45.36 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=32.1
Q ss_pred ceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCcccc
Q 004685 671 VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS 707 (737)
Q Consensus 671 ~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~ 707 (737)
.|.+++..++..+++|-+.|+++|||++.++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667778888899999999999999999999887753
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.60 E-value=55 Score=38.21 Aligned_cols=35 Identities=6% Similarity=0.077 Sum_probs=30.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (737)
Q Consensus 281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~ 315 (737)
.+.+++..++..++++-+.|+++++|++.+++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 57788888899999999999999999999976433
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=53.21 E-value=3.8e+02 Score=32.61 Aligned_cols=171 Identities=14% Similarity=0.167 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccC----ccceEEEEEeeCCCCCEEEEEE-------CCCc
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGH----SANVFCTKFVPETSDELVVSGA-------GDAE 118 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~~~l~sgs-------~dg~ 118 (737)
.+|.-=.|-.+ +.|+..+. ..|.-|++... .+.+.| .-| ...|..-..+++ .+.++..| -.|.
T Consensus 106 e~VvfWkWis~-~~l~lVT~-~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~~--~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 106 DDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CCceEEEecCC-CeeEEEcC-CeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCCC--CCeEEEEeeccCCCcccce
Confidence 45655566543 33444432 47999999743 233333 223 355666666676 45554332 3588
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe--cCCCcEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s~---Dg~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.+|...... .+.+.+|...-..+... +....++..+.. .+.+++-++....... +..
T Consensus 181 mQLyS~er~~-----------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~------~~f 243 (1630)
T 1xi4_A 181 MQLYSVDRKV-----------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN------QPF 243 (1630)
T ss_pred eeeeeccccc-----------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC------CCC
Confidence 8999887533 44556665544333332 111123322222 2688888885531000 000
Q ss_pred ceEEEeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004685 194 RNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (737)
.... ..+.+++ .......++..++.. ..+..-+.-|.|.+||+.++..+.
T Consensus 244 ~kk~--------~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 244 PKKA--------VDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cccc--------ccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhh
Confidence 0000 1111111 123345678888864 588888899999999999987553
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=51.78 E-value=2.3e+02 Score=29.54 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=116.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccC----ccceEEEEEeeCCCCCEEEEEE-------CCCc
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGH----SANVFCTKFVPETSDELVVSGA-------GDAE 118 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~~~l~sgs-------~dg~ 118 (737)
+.|.-=+|-. .+.|+..+. ..|.-|+++.. ...+.| .-| ...|..-..+++ .+.++..+ -.|.
T Consensus 106 e~VvfWkWis-~~~l~lVT~-taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 106 DDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp SCCCEEEEEE-TTEEEEECS-SEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT--SSEEEEEEEEEETTEEEEE
T ss_pred CCceEEEecC-CCeEEEEcC-CeeEEecccCCCCchhhe-ecchhcccceEEEEEECCC--CCeEEEEeecccCCcccce
Confidence 4555556643 344555543 58999999753 344555 333 345666666666 56654332 2477
Q ss_pred EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC--CCcEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCcc
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQEC 193 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~D---g~I~vwdl~~~~~~~~~~~~~~~~ 193 (737)
+.+|..... ..+.+.+|...-..+.+... ...++..+... +.+++.++...... ....
T Consensus 181 mQLYS~er~-----------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~------~~~f 243 (494)
T 1bpo_A 181 MQLYSVDRK-----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPF 243 (494)
T ss_dssp EEEEESTTC-----------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT------CCCC
T ss_pred EEEeecccc-----------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC------CCCc
Confidence 889998853 25677788665544444211 11244444432 68889888553100 0011
Q ss_pred ceEEEeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685 194 RNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
.....+ +.+.+ .......++..++.. ..+..-..-|.|++||+.++..+..-..
T Consensus 244 ~kk~vd--------v~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrI---------------- 298 (494)
T 1bpo_A 244 PKKAVD--------VFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRI---------------- 298 (494)
T ss_dssp CCEEEE--------CCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEEC----------------
T ss_pred cceeee--------eeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecc----------------
Confidence 111111 22222 234456788999874 6888889999999999999875432110
Q ss_pred cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
+...|-..+-+....-++.-...|.|.--.+....
T Consensus 299 -----s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 299 -----SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -----CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -----cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 01123333344444445555566766666666643
No 347
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=49.65 E-value=3.1e+02 Score=31.02 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEccc------CccceEEEEEeeCCCCCEEEEEECCCc----
Q 004685 50 QGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETSDELVVSGAGDAE---- 118 (737)
Q Consensus 50 ~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~------h~~~V~~v~~sp~~~~~~l~sgs~dg~---- 118 (737)
.+.|.+|+++|. ...+..+...+.|...+ +.++.-..+... ....|.+|++.|.. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~-~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN-PDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE-EEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCC-CCEEEEEeCccCCCcc
Confidence 468999999995 45666677777776555 344433333111 12469999999853 344444443211
Q ss_pred EEEEecCCCCCCCCCCCCCCCcee-ec-----cCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685 119 VRLFNLSRFSGRGLDDNAITPSAL-YQ-----CHTRRVKKLAVEVGNPHVVWSASEDGT 171 (737)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~-~~-----~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 171 (737)
-.||.....- .. ++.+.. +. .....+..++++|.++..++.+...+.
T Consensus 92 ~~v~~S~DgG-~T-----W~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 92 AAFYVSEDRG-QS-----FTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp CEEEEESSTT-SE-----EEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred cEEEEECCCC-Cc-----ceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 3444433211 10 111100 00 001135678888866667777664443
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.26 E-value=15 Score=40.81 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=29.0
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEeec
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG 667 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~g 667 (737)
...+..++++=+.|+++||||+.+++++.+..-
T Consensus 227 ~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 227 KLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 355689999999999999999999999987754
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=45.82 E-value=3.6e+02 Score=30.08 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (737)
Q Consensus 50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~ 129 (737)
...|++|.-..+|. |-.|..+| |..||-.+.+............|.++....+ + .|-.|+.+| +..||.....-
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~--g-~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDN--T-YLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETT--T-EEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCC--C-cEEEEeCCC-eEEEeCCCCEE
Confidence 45799999888776 44456666 5567743322111000112346888776665 3 555566665 78898875211
Q ss_pred CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (737)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (737)
.. ........|.++... ++ .|..++.+ .+..+|..+.+.. .+.. ..
T Consensus 95 --------~~--~~~~~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-------------~~~~-------~~ 140 (758)
T 3ott_A 95 --------EQ--PETDFPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-------------SFDT-------RR 140 (758)
T ss_dssp --------CC--CSCCCCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-------------EECH-------HH
T ss_pred --------EC--cccCCCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-------------Eecc-------CC
Confidence 00 001112346666543 33 44456655 6888887654311 0000 00
Q ss_pred CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (737)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 289 (737)
. ......|.++....+ + .|.+++.+ -|..||..+.+.. .+... .. .......|.++...+
T Consensus 141 ~-~l~~~~i~~i~~d~~-g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~------------~~---~~~~~~~i~~i~~d~ 200 (758)
T 3ott_A 141 N-GLPNNTIYSIIRTKD-N-QIYVGTYN-GLCRYIPSNGKFE-GIPLP------------VH---SSQSNLFVNSLLEDT 200 (758)
T ss_dssp H-CCSCSCEEEEEECTT-C-CEEEEETT-EEEEEETTTTEEE-EECCC------------CC---TTCSSCCEEEEEEET
T ss_pred C-CcCCCeEEEEEEcCC-C-CEEEEeCC-CHhhCccCCCceE-EecCC------------Cc---cccccceeEEEEEEC
Confidence 0 011235677777664 3 34445554 4777887654311 11000 00 001111388888888
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC
Q 004685 290 NGEEVLLSYSGEHVYLMDVNHAG 312 (737)
Q Consensus 290 ~g~~l~~g~~dg~v~iwd~~~~~ 312 (737)
++..|.+|+. +.+..+|..+..
T Consensus 201 ~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 201 TRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp TTTEEEEEEE-EEEEEEETTTTE
T ss_pred CCCEEEEEEC-CCCeEEcCCCCe
Confidence 8776666664 468888877643
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=45.52 E-value=2.5e+02 Score=28.23 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=17.3
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685 149 RVKKLAVEVGNPHVVWSASEDGTLRQH 175 (737)
Q Consensus 149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vw 175 (737)
.+.+|.++|.++..|+.+...+ |...
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 5889999986666666666543 4433
No 351
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.72 E-value=57 Score=35.16 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=38.5
Q ss_pred ccCCCCEEEEec------------CCCcEEEEEcCcccEEEEeecC-CCceEEEEecCCCCeEEEE
Q 004685 635 LGQRGDYIASGS------------DDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 687 (737)
Q Consensus 635 ~s~d~~~l~sgs------------~D~~i~iWd~~t~~~~~~l~gH-~~~V~~v~~sp~~~~l~S~ 687 (737)
|.++|.+.+... ....++.++..+|++...+.+. -..++.++||||++.|..+
T Consensus 483 fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 677888766321 1236777788889998888875 4679999999999854433
No 352
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.11 E-value=9.9 Score=45.60 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=31.1
Q ss_pred ceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCcccc
Q 004685 671 VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS 707 (737)
Q Consensus 671 ~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~ 707 (737)
.|.+++..++..+++|-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455667788899999999999999999999887763
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=40.15 E-value=2.7e+02 Score=27.04 Aligned_cols=66 Identities=6% Similarity=0.011 Sum_probs=35.8
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-
Q 004685 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG- 300 (737)
Q Consensus 222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d- 300 (737)
+|+|.+..++.+......|...++........+ .+ ... ..++|++.+|+-....
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~--------------------~~----~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY--------------------DC----NCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEE--------------------CS----CEE-EEEEEETTEEEEEEGGG
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEe--------------------CC----Ccc-ceeeecCCEEEEEEcCC
Confidence 356665445555544678888887654321110 00 111 2356999988877654
Q ss_pred -CeEEEEEcCCCC
Q 004685 301 -EHVYLMDVNHAG 312 (737)
Q Consensus 301 -g~v~iwd~~~~~ 312 (737)
..|..-++....
T Consensus 206 ~~~I~~~~ldG~~ 218 (302)
T 3s25_A 206 DNAIVHVNINNPN 218 (302)
T ss_dssp TTEEEEECSSSCC
T ss_pred CcEEEEEECCCCC
Confidence 355555555433
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=39.30 E-value=3.1e+02 Score=27.51 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=16.2
Q ss_pred ceEEEEEecCCCcEEEEEeCCC
Q 004685 217 SLKSCDISSTRPHLLLVGGSDA 238 (737)
Q Consensus 217 ~v~~i~~sp~~~~~l~t~s~Dg 238 (737)
.+.++.++|.++..+.++...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEcCCe
Confidence 4788999987556777777555
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.44 E-value=28 Score=41.74 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=27.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEe
Q 004685 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML 665 (737)
Q Consensus 635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l 665 (737)
..++..++++=+.|+++|||++.+++++.+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 5678899999999999999999999888764
No 356
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=35.95 E-value=78 Score=26.92 Aligned_cols=109 Identities=13% Similarity=0.000 Sum_probs=77.0
Q ss_pred hhhhHHHHhhhcccCCCCccchhhhhhhhhcccC-----CCC-------CcchhhhhhHHHHHhhhcccccchhhhHHHH
Q 004685 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLS-----GIG-------PMLRHECLCIRAALLLKRKWKNDAQMAIRDC 430 (737)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 430 (737)
...+...+......|. +..++..+..++...+. ... .+....++.+++.++...+ +...|+.++
T Consensus 11 a~~~~~~G~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~ 86 (162)
T 3rkv_A 11 VEALRQKGNELFVQKD-YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 3444555555555555 56777777777765111 011 1122346777887777644 445778889
Q ss_pred HHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCch
Q 004685 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (737)
..++.++|....+.+.....+..++++..+.........+.|...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999999999999999988888888888765
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=35.48 E-value=77 Score=34.10 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeE-------------EEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004685 51 GCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKL-------------LHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs-~dg~V~vwd~~~~~~-------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 116 (737)
.....+.++|||++++.++ .+.+|.|+|+++... .... .-.-.....+|.++ |....+...|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~--G~aYTtlfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGR--GNAYTTLFID 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSS--SEEEEEETTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCC--CceEeeeeec
Confidence 4456789999999887654 588999999874211 2222 23455678999998 7777777789
Q ss_pred CcEEEEecCC
Q 004685 117 AEVRLFNLSR 126 (737)
Q Consensus 117 g~I~iwd~~~ 126 (737)
..|.-|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999974
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=33.50 E-value=98 Score=33.28 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=48.3
Q ss_pred ccCCCCEE-EEecCCCcEEEEEcCcc------cE-------EEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCC
Q 004685 635 LGQRGDYI-ASGSDDGRWFIWEKQTG------RL-------IKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 700 (737)
Q Consensus 635 ~s~d~~~l-~sgs~D~~i~iWd~~t~------~~-------~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~ 700 (737)
++|||+|+ ++|--+.++.|+|++.. ++ +....--. .-...+|.++|.-..|--.|..|.-|++.+
T Consensus 330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 89999985 55667999999999852 11 22332222 456799999996666667899999999875
Q ss_pred C
Q 004685 701 S 701 (737)
Q Consensus 701 ~ 701 (737)
.
T Consensus 409 a 409 (638)
T 3sbq_A 409 A 409 (638)
T ss_dssp H
T ss_pred H
Confidence 3
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=32.62 E-value=4.5e+02 Score=27.37 Aligned_cols=30 Identities=7% Similarity=0.009 Sum_probs=21.1
Q ss_pred CceeEEEEecCCC-cEEEEEeCCCcEEEEEcC
Q 004685 148 RRVKKLAVEVGNP-HVVWSASEDGTLRQHDFR 178 (737)
Q Consensus 148 ~~v~~l~~~p~~~-~~l~s~s~Dg~I~vwdl~ 178 (737)
...+.|+|.|++. ++| .+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~-V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLF-ILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEE-EEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEE-EEeCCceEEEEeCC
Confidence 3457899999553 355 56778999999743
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.52 E-value=66 Score=35.75 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 004685 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (737)
Q Consensus 51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~ 88 (737)
..|.++.+ +..+|++-+.|+++|+|++.+++++...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 45666655 4679999999999999999999988776
No 361
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=31.28 E-value=18 Score=31.81 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=74.5
Q ss_pred hhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCC-c-----chhhhhhHHHHHhhhcccccchhhhHHHHHHhhcc--
Q 004685 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-M-----LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI-- 436 (737)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-- 436 (737)
.+...++.....|. |..++..+..++...+..... . ....++.+++.++...+. .-.|+.++..++.+
T Consensus 13 ~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhhh
Confidence 34444455555554 667888888888877662211 1 112378899988887653 34567778888888
Q ss_pred -----CCcccchh----HHHHHHHHHHhhHHHHHHHHHHhcccCCCchh
Q 004685 437 -----DSSSFRAH----LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (737)
Q Consensus 437 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (737)
+|....+. +.....+..++++.++.........+.|+...
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999988 88999999999999998776666555554433
No 362
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=27.63 E-value=4.6e+02 Score=26.00 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=50.7
Q ss_pred eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEc---ccCccceEEEEEeeC--CCCCEEEEEE--C
Q 004685 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIE---TGHSANVFCTKFVPE--TSDELVVSGA--G 115 (737)
Q Consensus 45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~--~~~~---~~h~~~V~~v~~sp~--~~~~~l~sgs--~ 115 (737)
.+-..-...+.|+|.|+|.++++-...|.|++++..+++.. ..+. .........|+++|+ .++.++++-+ .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34333456789999999998887766899999987655432 2120 123567899999984 1144545433 3
Q ss_pred CCcEEEEecC
Q 004685 116 DAEVRLFNLS 125 (737)
Q Consensus 116 dg~I~iwd~~ 125 (737)
++.|.-|.+.
T Consensus 106 ~~~v~R~~~~ 115 (347)
T 3das_A 106 DNRIVRMLYD 115 (347)
T ss_dssp SEEEEEEEBC
T ss_pred CCEEEEEEeC
Confidence 4455555554
No 363
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.57 E-value=1.9e+02 Score=22.81 Aligned_cols=93 Identities=24% Similarity=0.191 Sum_probs=65.8
Q ss_pred HHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHH
Q 004685 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (737)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 448 (737)
.+......+. +..++..+..++...+.. ...+.+++.++...+ +.-.|+..+..++.++|....+.+.+.
T Consensus 10 ~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 10 EGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3333333343 556777777777765543 345667777766543 445677888889999999999888888
Q ss_pred HHHHHHhhHHHHHHHHHHhcccC
Q 004685 449 EALEQLCKYKEALDFAIAAQCLD 471 (737)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (737)
..+...++..++...........
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 88999999998887776666555
No 364
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=25.18 E-value=1.7e+02 Score=24.83 Aligned_cols=105 Identities=9% Similarity=-0.087 Sum_probs=74.3
Q ss_pred cchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcc
Q 004685 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (737)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 440 (737)
.....+...+......|. +..++..+..++...+.. ...+.+.+.++...+ +.-.|+.....++.++|..
T Consensus 34 ~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKE---QFQQAADLYAVAFALGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhCCCC
Confidence 334445555555555555 667788888888766553 334555666555433 3445677778889999999
Q ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCch
Q 004685 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (737)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (737)
..+++.+..++..+++..++...........|+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999988887777777643
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.31 E-value=2e+02 Score=31.23 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=37.2
Q ss_pred EEEEEcCCCCEEEEEeCC------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEE
Q 004685 54 NAISWNSKGSLLISGSDD------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (737)
Q Consensus 54 ~~l~~s~~g~~lasgs~d------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s 112 (737)
=-|+|+|.|.+++.-..+ ..+.+.+..+++...-+.......++.++|+|+ +..|+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD--g~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD--QKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT--SSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC--CCEEEE
Confidence 448899999966654322 245666767776655442234678999999999 454443
No 366
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=23.78 E-value=91 Score=31.17 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=43.3
Q ss_pred CCEEEEecCCCcEEEEEcCcccEEEEeecC-CCceEEEEec--C-CCCeEEEE-ecCCcEEEEcCCCCCC
Q 004685 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCH--P-FDCVVATS-GIDNTIKIWTPSASVP 703 (737)
Q Consensus 639 ~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH-~~~V~~v~~s--p-~~~~l~S~-~~Dg~i~lW~~~~~~~ 703 (737)
+.+|+.++.||.|+-.|..+|+.+=++..- ..++....-. + ++..++-. ..||.|..++..+|..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~ 79 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ 79 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE
Confidence 357899999999999999999988777654 2333332211 1 22333333 5788888888877643
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=23.53 E-value=4.8e+02 Score=24.78 Aligned_cols=167 Identities=10% Similarity=-0.018 Sum_probs=80.6
Q ss_pred CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (737)
Q Consensus 71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 150 (737)
||.|..|-......+..- ..-...|..++.... ..+.-. ||.|..|-........ + -......|
T Consensus 80 ~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg--------~--~~~~~~~i 143 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTT--------V--PAEAQSGV 143 (282)
T ss_dssp TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTS--------C--CGGGGSSE
T ss_pred CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCC--------C--CccCCCCe
Confidence 677777765432111110 111235666665543 333334 7888888765422111 0 01122346
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (737)
Q Consensus 151 ~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (737)
..++... .+.++ -. ||.|..|-........ .+......|..++.-.. ..
T Consensus 144 ~~i~~G~--~~~~~-l~-~G~v~~wG~n~~gqlg-------------------------~p~~~~~~v~~i~~G~~--hs 192 (282)
T 3qhy_B 144 TALDGGV--YTALA-VK-NGGVIAWGDNYFGQTT-------------------------VPAEAQSGVDDVAGGIF--HS 192 (282)
T ss_dssp EEEEECS--SEEEE-EE-TTEEEEEECCTTSTTS-------------------------CCGGGGSSEEEEEECSS--EE
T ss_pred EEEEccc--CEEEE-EE-CCEEEEecCCCCCCCC-------------------------CceecCCCeEEEEecCC--EE
Confidence 6665532 12332 23 6778888765433220 00001234556655542 34
Q ss_pred EEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685 231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~ 310 (737)
++. .||.|+.|-......+.. +.. ....|..|+-..... ++.. ||.|+.|=...
T Consensus 193 ~al--~~G~v~~wG~n~~gqlg~---------------p~~------~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 193 LAL--KDGKVIAWGDNRYKQTTV---------------PTE------ALSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp EEE--ETTEEEEEECCTTSTTCC---------------CGG------GGSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred EEE--ECCeEEEEECCCCCCCCC---------------Ccc------cCCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 444 599999998765432210 000 011377776554433 3333 99999996554
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=22.40 E-value=65 Score=36.12 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=46.3
Q ss_pred ceeeeecccCCCCEEEE-----ecCCCcEEEEEcCcccEEE-Eee--cCCC-----ceEEEEecCCCCeEEEEe------
Q 004685 628 DIKQASFLGQRGDYIAS-----GSDDGRWFIWEKQTGRLIK-MLL--GDEA-----VVNCVQCHPFDCVVATSG------ 688 (737)
Q Consensus 628 ~i~~~~~~s~d~~~l~s-----gs~D~~i~iWd~~t~~~~~-~l~--gH~~-----~V~~v~~sp~~~~l~S~~------ 688 (737)
.+....+++||+++++. ||.-..++++|+.|++.+. .|. +..+ .-..++|-.++.++++..
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34455558999998766 4555889999999999883 233 0010 113448875566766532
Q ss_pred ----cCCcEEEEcCCCC
Q 004685 689 ----IDNTIKIWTPSAS 701 (737)
Q Consensus 689 ----~Dg~i~lW~~~~~ 701 (737)
.-.+|+.|.+-+.
T Consensus 210 ~~~~~~~~v~~~~~Gt~ 226 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGES 226 (711)
T ss_dssp CTTSSBCEEEEEETTSC
T ss_pred CcCCCCCEEEEEECCCC
Confidence 1245888877654
No 369
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.28 E-value=5.3e+02 Score=24.46 Aligned_cols=183 Identities=14% Similarity=0.040 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (737)
Q Consensus 52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 131 (737)
.|..|+.... ..++. . ||.|..|-......+..- ......|..++.... ..++. . ||.|..|-........
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~---hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY---HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS---EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC---EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 4666665432 23333 4 888988876542221111 122346777776654 33333 4 9999999876532211
Q ss_pred CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (737)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (737)
.|.. -...|..++... . +.+ .-. ||.|..|-......... .
T Consensus 96 ------~P~~----~~~~v~~ia~G~-~-hs~-al~-~G~v~~wG~n~~gqlg~-------------------------~ 136 (282)
T 3qhy_B 96 ------VPAE----ARSGVDAIAAGA-W-ASY-ALK-DGKVIAWGDDSDGQTTV-------------------------P 136 (282)
T ss_dssp ------CCGG----GSSSEEEEEEET-T-EEE-EEE-TTEEEEEECCTTSTTSC-------------------------C
T ss_pred ------CCcc----cCCCeEEEECcC-C-EEE-EEe-CCeEEEecCCCCCcCCC-------------------------C
Confidence 1111 124677777754 2 333 344 99999998765432200 0
Q ss_pred CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (737)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 291 (737)
......|..++.-.. ..++. . ||.|..|-......+.. |... ...|..++...+.
T Consensus 137 ~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg~---------------p~~~------~~~v~~i~~G~~h 191 (282)
T 3qhy_B 137 AEAQSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTTV---------------PAEA------QSGVDDVAGGIFH 191 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTSC---------------CGGG------GSSEEEEEECSSE
T ss_pred ccCCCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCCC---------------ceec------CCCeEEEEecCCE
Confidence 001223555555432 23333 3 79999998765432210 0000 1147777765443
Q ss_pred CEEEEEeCCCeEEEEEcCC
Q 004685 292 EEVLLSYSGEHVYLMDVNH 310 (737)
Q Consensus 292 ~~l~~g~~dg~v~iwd~~~ 310 (737)
. ++. .||.|+.|=...
T Consensus 192 s-~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 192 S-LAL--KDGKVIAWGDNR 207 (282)
T ss_dssp E-EEE--ETTEEEEEECCT
T ss_pred E-EEE--ECCeEEEEECCC
Confidence 3 333 599999997655
Done!