Query 004686
Match_columns 737
No_of_seqs 297 out of 4600
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 11:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.8E-66 1.5E-70 606.6 59.5 673 2-704 194-915 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4.8E-56 1E-60 494.0 30.0 575 2-654 168-788 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.2E-36 6.9E-41 305.2 14.5 265 1-269 5-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-30 2.6E-35 309.3 21.3 372 333-707 69-466 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.1E-30 4.5E-35 307.2 18.5 375 332-709 139-563 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.1E-27 2.3E-32 239.6 3.7 393 332-736 77-484 (873)
7 KOG0444 Cytoskeletal regulator 99.9 5.9E-27 1.3E-31 235.8 -5.0 332 334-704 33-373 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 7.2E-27 1.6E-31 235.2 -5.9 314 331-672 53-377 (1255)
9 KOG4194 Membrane glycoprotein 99.9 2.6E-25 5.7E-30 222.6 5.2 363 336-706 55-429 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 3.6E-25 7.8E-30 212.0 -7.4 346 355-708 112-543 (565)
11 PLN03210 Resistant to P. syrin 99.8 2.4E-19 5.1E-24 212.7 24.8 311 352-697 583-945 (1153)
12 KOG0618 Serine/threonine phosp 99.8 2.9E-22 6.3E-27 211.9 -5.5 122 335-456 23-147 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 1.2E-21 2.7E-26 187.9 -11.0 240 379-648 69-309 (565)
14 PRK15387 E3 ubiquitin-protein 99.8 6.4E-18 1.4E-22 185.4 15.2 171 359-552 203-373 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 2.3E-17 5E-22 181.0 18.3 259 336-653 204-462 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 1.5E-17 3.3E-22 183.9 12.5 244 359-649 180-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 3.3E-17 7.2E-22 181.2 12.6 222 378-648 178-400 (754)
18 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.5E-23 185.0 -3.3 269 350-649 192-465 (1081)
19 KOG4237 Extracellular matrix p 99.6 1E-17 2.2E-22 161.2 -3.5 325 383-730 51-383 (498)
20 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.5E-22 142.0 -4.2 161 390-552 23-184 (264)
21 KOG0617 Ras suppressor protein 99.6 8.1E-17 1.8E-21 136.9 -3.2 162 378-541 33-196 (264)
22 PRK04841 transcriptional regul 99.6 2.8E-13 6E-18 160.5 25.1 287 2-305 20-335 (903)
23 KOG4237 Extracellular matrix p 99.6 1.8E-16 3.9E-21 152.7 -1.8 221 332-552 66-333 (498)
24 cd00116 LRR_RI Leucine-rich re 99.5 2.1E-15 4.5E-20 155.8 -4.3 18 692-709 277-294 (319)
25 cd00116 LRR_RI Leucine-rich re 99.4 4E-14 8.6E-19 146.3 2.9 263 351-647 17-318 (319)
26 COG2909 MalT ATP-dependent tra 99.4 1.5E-11 3.2E-16 131.4 20.8 289 3-306 26-342 (894)
27 PF05729 NACHT: NACHT domain 99.3 4.9E-11 1.1E-15 110.0 12.5 143 16-165 1-163 (166)
28 TIGR03015 pepcterm_ATPase puta 99.2 4.9E-10 1.1E-14 112.2 17.8 179 15-200 43-242 (269)
29 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 134.0 -3.1 209 385-647 57-271 (722)
30 PRK00411 cdc6 cell division co 99.2 4E-09 8.7E-14 111.9 24.3 271 3-284 41-358 (394)
31 KOG3207 Beta-tubulin folding c 99.2 6.1E-12 1.3E-16 123.6 0.4 212 417-650 115-340 (505)
32 PF01637 Arch_ATPase: Archaeal 99.1 1.9E-10 4.2E-15 112.8 9.2 189 2-195 9-233 (234)
33 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 3.8E-13 105.9 24.3 271 3-284 26-350 (365)
34 TIGR00635 ruvB Holliday juncti 99.1 1.3E-09 2.8E-14 111.1 15.0 249 14-284 29-289 (305)
35 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.7E-17 129.1 -3.9 187 450-668 79-271 (722)
36 PRK00080 ruvB Holliday junctio 99.1 9.8E-10 2.1E-14 112.6 13.2 251 13-284 49-310 (328)
37 KOG4658 Apoptotic ATPase [Sign 99.0 4.1E-10 8.9E-15 127.4 8.9 196 357-554 523-730 (889)
38 KOG3207 Beta-tubulin folding c 99.0 3.3E-11 7.1E-16 118.6 -0.8 41 586-626 299-339 (505)
39 KOG1909 Ran GTPase-activating 99.0 6.5E-11 1.4E-15 113.4 -0.2 232 398-649 28-311 (382)
40 KOG1259 Nischarin, modulator o 99.0 2.5E-10 5.3E-15 106.7 2.2 60 587-649 351-412 (490)
41 COG3899 Predicted ATPase [Gene 98.9 2.4E-08 5.2E-13 113.7 18.3 298 3-304 11-388 (849)
42 COG4886 Leucine-rich repeat (L 98.9 1E-09 2.2E-14 116.6 7.0 196 427-653 97-294 (394)
43 COG3903 Predicted ATPase [Gene 98.9 1.3E-09 2.8E-14 108.0 6.5 281 13-306 12-318 (414)
44 PRK06893 DNA replication initi 98.9 1.1E-08 2.4E-13 98.6 11.6 152 15-198 39-205 (229)
45 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.2E-08 4.7E-13 97.4 13.0 164 2-199 27-204 (226)
46 PF14580 LRR_9: Leucine-rich r 98.8 2.5E-09 5.4E-14 96.5 4.4 105 354-458 16-125 (175)
47 COG4886 Leucine-rich repeat (L 98.8 6.2E-09 1.3E-13 110.6 7.8 188 361-552 97-288 (394)
48 PF14580 LRR_9: Leucine-rich r 98.8 2.3E-09 4.9E-14 96.7 2.8 132 393-550 12-149 (175)
49 COG2256 MGS1 ATPase related to 98.8 8E-08 1.7E-12 94.7 13.0 150 13-192 46-208 (436)
50 PF13401 AAA_22: AAA domain; P 98.8 3.2E-08 6.9E-13 86.9 9.3 114 14-134 3-125 (131)
51 PF13173 AAA_14: AAA domain 98.8 3.3E-08 7.2E-13 85.9 8.6 120 15-157 2-127 (128)
52 KOG4341 F-box protein containi 98.7 1.1E-10 2.5E-15 114.2 -7.8 269 401-702 139-435 (483)
53 KOG1259 Nischarin, modulator o 98.7 2.4E-09 5.3E-14 100.2 0.7 126 422-552 283-410 (490)
54 PRK08727 hypothetical protein; 98.7 2E-07 4.4E-12 90.1 11.8 148 15-194 41-202 (233)
55 PF00308 Bac_DnaA: Bacterial d 98.6 5.9E-07 1.3E-11 85.7 14.3 160 14-198 33-210 (219)
56 TIGR00678 holB DNA polymerase 98.6 1.4E-06 2.9E-11 81.7 15.9 159 3-191 3-186 (188)
57 KOG1909 Ran GTPase-activating 98.6 6.7E-09 1.5E-13 99.8 0.1 229 324-553 21-310 (382)
58 PRK08084 DNA replication initi 98.6 4.1E-07 8.8E-12 88.1 12.2 150 15-198 45-211 (235)
59 PRK14961 DNA polymerase III su 98.6 1.8E-06 3.9E-11 89.6 17.4 170 15-196 38-220 (363)
60 PRK05642 DNA replication initi 98.6 8E-07 1.7E-11 85.9 13.3 153 15-199 45-211 (234)
61 PRK07003 DNA polymerase III su 98.6 2.4E-06 5.1E-11 92.7 17.6 181 3-191 27-215 (830)
62 PRK14956 DNA polymerase III su 98.6 5.2E-07 1.1E-11 93.9 12.1 184 4-195 30-221 (484)
63 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.3E-14 102.5 -6.8 198 401-640 186-391 (419)
64 PTZ00112 origin recognition co 98.5 2.3E-06 5E-11 93.3 16.9 146 15-166 781-950 (1164)
65 PRK09087 hypothetical protein; 98.5 7.5E-07 1.6E-11 85.3 11.5 141 15-198 44-197 (226)
66 PRK13342 recombination factor 98.5 1.2E-06 2.6E-11 92.7 14.2 163 4-198 27-198 (413)
67 PF05496 RuvB_N: Holliday junc 98.5 4E-07 8.6E-12 83.9 9.1 156 12-200 47-225 (233)
68 PLN03025 replication factor C 98.5 7.9E-07 1.7E-11 90.8 12.2 170 3-194 24-198 (319)
69 PRK14949 DNA polymerase III su 98.5 1.4E-06 3E-11 96.4 14.5 101 95-197 117-221 (944)
70 PRK14087 dnaA chromosomal repl 98.5 1.6E-06 3.4E-11 92.0 14.6 166 15-199 141-322 (450)
71 PRK12402 replication factor C 98.5 1.5E-06 3.2E-11 90.4 14.1 188 3-197 26-227 (337)
72 PLN03150 hypothetical protein; 98.5 1.6E-07 3.4E-12 104.6 6.9 106 447-552 419-526 (623)
73 COG1474 CDC6 Cdc6-related prot 98.5 6E-06 1.3E-10 84.6 17.6 166 17-190 44-231 (366)
74 PRK08903 DnaA regulatory inact 98.5 1.3E-06 2.9E-11 84.7 12.3 151 14-200 41-203 (227)
75 PRK14960 DNA polymerase III su 98.5 1.9E-06 4.1E-11 92.4 14.3 180 3-195 26-218 (702)
76 PLN03150 hypothetical protein; 98.5 2.3E-07 5E-12 103.3 7.4 105 425-529 420-526 (623)
77 PRK04195 replication factor C 98.5 2.3E-06 4.9E-11 92.6 14.7 172 2-200 24-206 (482)
78 PRK14963 DNA polymerase III su 98.5 7.3E-06 1.6E-10 87.9 17.8 179 4-194 26-215 (504)
79 KOG2120 SCF ubiquitin ligase, 98.4 3.5E-09 7.7E-14 99.1 -6.7 178 447-646 186-373 (419)
80 PRK12323 DNA polymerase III su 98.4 3.7E-06 8.1E-11 90.0 14.3 186 3-196 27-225 (700)
81 PRK00440 rfc replication facto 98.4 6.3E-06 1.4E-10 84.9 15.9 171 3-196 28-203 (319)
82 PF14516 AAA_35: AAA-like doma 98.4 5.6E-05 1.2E-09 77.3 21.8 259 16-297 32-328 (331)
83 PRK14957 DNA polymerase III su 98.4 7.3E-06 1.6E-10 87.9 15.8 95 96-192 118-216 (546)
84 PRK14088 dnaA chromosomal repl 98.4 6E-06 1.3E-10 87.5 14.8 159 15-197 130-306 (440)
85 PRK05564 DNA polymerase III su 98.4 6.8E-06 1.5E-10 83.7 14.1 165 3-195 15-189 (313)
86 PRK06645 DNA polymerase III su 98.4 8.6E-06 1.9E-10 86.8 15.2 169 15-194 43-227 (507)
87 PRK14958 DNA polymerase III su 98.3 1.3E-05 2.7E-10 86.3 16.4 181 3-196 27-220 (509)
88 TIGR00362 DnaA chromosomal rep 98.3 9.1E-06 2E-10 86.1 15.2 159 15-196 136-310 (405)
89 PRK08691 DNA polymerase III su 98.3 4.2E-06 9E-11 90.7 12.3 181 3-196 27-220 (709)
90 PRK00149 dnaA chromosomal repl 98.3 4.1E-06 8.8E-11 89.9 12.2 160 14-196 147-322 (450)
91 KOG0531 Protein phosphatase 1, 98.3 9.6E-08 2.1E-12 101.5 -0.6 125 423-552 72-197 (414)
92 TIGR02397 dnaX_nterm DNA polym 98.3 1.8E-05 3.8E-10 82.9 16.5 100 96-197 116-219 (355)
93 KOG2028 ATPase related to the 98.3 8.9E-06 1.9E-10 78.9 12.7 154 13-191 160-331 (554)
94 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.7E-10 82.1 15.9 164 15-196 36-213 (394)
95 PRK12422 chromosomal replicati 98.3 1.2E-05 2.6E-10 85.0 15.1 153 15-190 141-307 (445)
96 TIGR02881 spore_V_K stage V sp 98.3 4.4E-06 9.6E-11 82.6 11.1 133 13-166 40-192 (261)
97 PRK14964 DNA polymerase III su 98.3 2.4E-05 5.2E-10 82.7 17.0 168 15-194 35-215 (491)
98 PRK07994 DNA polymerase III su 98.3 8.6E-06 1.9E-10 88.8 14.1 170 15-196 38-220 (647)
99 cd00009 AAA The AAA+ (ATPases 98.3 8E-06 1.7E-10 73.4 11.9 105 14-135 18-130 (151)
100 PRK14951 DNA polymerase III su 98.3 2.8E-05 6E-10 84.7 17.5 182 3-196 27-225 (618)
101 COG3267 ExeA Type II secretory 98.3 4.8E-05 1E-09 71.0 16.2 178 14-199 50-248 (269)
102 KOG2982 Uncharacterized conser 98.3 3.6E-07 7.7E-12 86.0 2.2 229 422-674 44-285 (418)
103 PF13855 LRR_8: Leucine rich r 98.3 1.1E-06 2.4E-11 64.8 4.1 58 447-504 2-59 (61)
104 PRK14962 DNA polymerase III su 98.2 2.7E-05 5.8E-10 82.8 15.9 99 96-196 116-219 (472)
105 PRK07471 DNA polymerase III su 98.2 9.4E-05 2E-09 76.1 19.1 95 96-196 140-238 (365)
106 PRK09112 DNA polymerase III su 98.2 1.4E-05 3.1E-10 81.6 12.8 170 15-196 45-240 (351)
107 KOG0989 Replication factor C, 98.2 2.6E-05 5.7E-10 74.4 13.4 167 13-200 55-234 (346)
108 TIGR01242 26Sp45 26S proteasom 98.2 1.8E-05 3.9E-10 82.5 13.9 149 15-190 156-328 (364)
109 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.3E-11 64.0 4.2 59 471-529 2-60 (61)
110 PRK14955 DNA polymerase III su 98.2 1.7E-05 3.6E-10 83.5 13.4 184 4-195 28-227 (397)
111 PRK13341 recombination factor 98.2 1.5E-05 3.2E-10 88.9 13.6 153 14-196 51-217 (725)
112 PRK06620 hypothetical protein; 98.2 1E-05 2.2E-10 76.7 10.7 136 16-196 45-189 (214)
113 PRK05896 DNA polymerase III su 98.2 1E-05 2.2E-10 86.9 11.6 170 15-196 38-220 (605)
114 PRK15386 type III secretion pr 98.2 6.7E-06 1.5E-10 83.6 9.6 74 444-529 50-123 (426)
115 PRK14086 dnaA chromosomal repl 98.2 3.3E-05 7.1E-10 83.1 15.2 156 16-196 315-488 (617)
116 PRK14952 DNA polymerase III su 98.2 6.5E-05 1.4E-09 81.6 17.6 176 4-192 25-215 (584)
117 cd01128 rho_factor Transcripti 98.2 2.6E-06 5.6E-11 82.2 5.7 92 16-109 17-115 (249)
118 PRK07133 DNA polymerase III su 98.2 2.8E-05 6E-10 85.4 14.1 176 3-196 29-219 (725)
119 PRK14969 DNA polymerase III su 98.2 2.8E-05 6.1E-10 84.2 14.2 179 4-195 28-219 (527)
120 PRK09111 DNA polymerase III su 98.2 3.4E-05 7.4E-10 84.3 14.8 172 15-197 46-234 (598)
121 COG0593 DnaA ATPase involved i 98.2 3E-05 6.5E-10 79.2 13.4 152 14-189 112-279 (408)
122 KOG1859 Leucine-rich repeat pr 98.1 4.7E-08 1E-12 102.5 -7.0 177 350-531 102-292 (1096)
123 PRK08451 DNA polymerase III su 98.1 8.7E-05 1.9E-09 79.4 17.2 100 96-197 116-219 (535)
124 KOG0531 Protein phosphatase 1, 98.1 5.3E-07 1.1E-11 95.9 0.5 190 356-552 71-266 (414)
125 KOG2982 Uncharacterized conser 98.1 1.2E-06 2.5E-11 82.6 2.3 83 399-481 70-157 (418)
126 PRK14970 DNA polymerase III su 98.1 6.6E-05 1.4E-09 78.6 15.8 168 4-195 29-208 (367)
127 PRK14950 DNA polymerase III su 98.1 3.1E-05 6.8E-10 85.5 13.7 183 4-198 28-223 (585)
128 PRK14954 DNA polymerase III su 98.1 2.7E-05 5.9E-10 85.1 12.7 172 15-193 38-225 (620)
129 PRK14953 DNA polymerase III su 98.1 0.00022 4.9E-09 76.3 18.9 100 96-197 118-221 (486)
130 PRK14959 DNA polymerase III su 98.1 9.7E-05 2.1E-09 80.0 15.8 172 15-198 38-223 (624)
131 KOG4341 F-box protein containi 98.1 9.4E-08 2E-12 94.2 -6.5 279 423-730 138-437 (483)
132 PRK05707 DNA polymerase III su 98.1 0.00015 3.3E-09 73.4 16.3 167 14-196 21-203 (328)
133 PRK14948 DNA polymerase III su 98.1 8E-05 1.7E-09 82.0 15.3 182 4-197 28-223 (620)
134 PRK09376 rho transcription ter 98.1 8.9E-06 1.9E-10 81.8 7.2 92 16-109 170-268 (416)
135 PRK07764 DNA polymerase III su 98.1 0.00013 2.7E-09 82.8 17.1 178 4-194 27-219 (824)
136 PF05621 TniB: Bacterial TniB 98.0 0.00015 3.3E-09 70.5 15.0 188 2-194 47-259 (302)
137 PF13191 AAA_16: AAA ATPase do 98.0 1.4E-05 3E-10 74.9 7.9 41 2-42 10-51 (185)
138 TIGR02880 cbbX_cfxQ probable R 98.0 4.5E-05 9.7E-10 76.0 11.6 129 17-166 60-209 (284)
139 PRK03992 proteasome-activating 98.0 7E-05 1.5E-09 78.4 13.6 149 14-189 164-336 (389)
140 KOG1859 Leucine-rich repeat pr 98.0 1.4E-07 3.1E-12 99.1 -6.4 110 584-707 183-293 (1096)
141 PRK06305 DNA polymerase III su 98.0 0.00012 2.5E-09 78.0 15.1 97 96-194 120-220 (451)
142 PF10443 RNA12: RNA12 protein; 98.0 0.00016 3.5E-09 73.5 15.0 191 1-202 5-284 (431)
143 PRK06647 DNA polymerase III su 98.0 0.00028 6E-09 76.9 18.1 181 3-196 27-220 (563)
144 TIGR03689 pup_AAA proteasome A 98.0 4.5E-05 9.7E-10 81.0 11.2 138 14-166 215-379 (512)
145 PRK15386 type III secretion pr 98.0 2.4E-05 5.2E-10 79.7 8.6 56 491-552 49-105 (426)
146 PRK14971 DNA polymerase III su 98.0 0.00025 5.4E-09 78.2 17.0 98 96-195 120-221 (614)
147 COG1373 Predicted ATPase (AAA+ 97.9 0.0001 2.2E-09 77.1 13.0 147 17-195 39-191 (398)
148 CHL00181 cbbX CbbX; Provisiona 97.9 0.00034 7.4E-09 69.7 14.9 130 16-166 60-210 (287)
149 TIGR00767 rho transcription te 97.9 2.5E-05 5.5E-10 79.1 6.7 93 16-110 169-268 (415)
150 PRK05563 DNA polymerase III su 97.9 0.00043 9.3E-09 75.8 16.6 179 3-194 27-218 (559)
151 COG1222 RPT1 ATP-dependent 26S 97.8 0.00014 3E-09 71.1 11.0 151 13-190 183-357 (406)
152 PRK14965 DNA polymerase III su 97.8 0.00047 1E-08 75.9 16.5 176 4-192 28-216 (576)
153 PHA02544 44 clamp loader, smal 97.8 0.00014 2.9E-09 74.7 11.7 135 3-163 32-171 (316)
154 KOG2543 Origin recognition com 97.8 0.00081 1.8E-08 66.5 16.0 156 3-165 17-193 (438)
155 PF00004 AAA: ATPase family as 97.8 0.00017 3.8E-09 63.1 10.7 23 18-40 1-23 (132)
156 CHL00176 ftsH cell division pr 97.8 0.00049 1.1E-08 76.0 16.4 148 15-188 216-386 (638)
157 PTZ00454 26S protease regulato 97.8 0.00033 7.1E-09 73.0 14.2 150 14-190 178-351 (398)
158 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00015 3.1E-09 77.4 11.6 153 13-190 257-429 (489)
159 PRK09361 radB DNA repair and r 97.8 0.0001 2.3E-09 71.3 9.5 49 2-50 10-58 (225)
160 smart00382 AAA ATPases associa 97.8 9.4E-05 2E-09 65.8 8.3 35 16-50 3-37 (148)
161 PRK08769 DNA polymerase III su 97.8 0.0011 2.3E-08 66.7 16.2 93 96-196 112-208 (319)
162 KOG0744 AAA+-type ATPase [Post 97.8 0.00024 5.2E-09 68.3 10.7 135 14-165 176-340 (423)
163 PRK08116 hypothetical protein; 97.7 0.00012 2.5E-09 72.2 9.0 102 16-135 115-221 (268)
164 COG1223 Predicted ATPase (AAA+ 97.7 0.00042 9.1E-09 64.5 11.8 160 4-190 136-319 (368)
165 PRK08181 transposase; Validate 97.7 9.7E-05 2.1E-09 72.3 7.8 35 16-50 107-141 (269)
166 TIGR01241 FtsH_fam ATP-depende 97.7 0.00065 1.4E-08 74.0 15.0 156 15-196 88-267 (495)
167 PF07693 KAP_NTPase: KAP famil 97.7 0.0016 3.5E-08 67.2 17.3 41 2-42 6-47 (325)
168 PF05673 DUF815: Protein of un 97.7 0.00022 4.8E-09 67.1 9.5 93 15-135 52-150 (249)
169 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.8E-10 51.7 3.2 35 613-647 1-35 (44)
170 PRK06090 DNA polymerase III su 97.7 0.0036 7.8E-08 62.8 18.7 162 14-196 24-201 (319)
171 PTZ00361 26 proteosome regulat 97.7 0.00026 5.7E-09 74.2 10.6 129 14-166 216-368 (438)
172 TIGR02237 recomb_radB DNA repa 97.7 0.00017 3.7E-09 68.9 8.6 46 5-50 2-47 (209)
173 PRK06964 DNA polymerase III su 97.7 0.0037 8E-08 63.4 18.4 91 96-196 131-225 (342)
174 cd01394 radB RadB. The archaea 97.6 0.00016 3.5E-09 69.6 8.0 49 2-50 6-54 (218)
175 PRK06871 DNA polymerase III su 97.6 0.0027 5.8E-08 64.0 16.7 162 15-193 24-200 (325)
176 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 50.5 3.6 40 588-629 1-40 (44)
177 TIGR02903 spore_lon_C ATP-depe 97.6 0.00065 1.4E-08 75.3 13.5 80 87-166 282-367 (615)
178 KOG2227 Pre-initiation complex 97.6 0.0024 5.2E-08 65.0 15.8 190 3-201 161-373 (529)
179 PRK07993 DNA polymerase III su 97.6 0.0024 5.3E-08 65.0 16.1 164 14-194 23-202 (334)
180 PRK08058 DNA polymerase III su 97.6 0.0022 4.8E-08 65.6 15.9 139 14-164 27-181 (329)
181 COG5238 RNA1 Ran GTPase-activa 97.6 2.3E-05 5E-10 73.1 1.2 240 445-707 29-317 (388)
182 PRK06835 DNA replication prote 97.6 0.00015 3.2E-09 73.3 7.1 35 16-50 184-218 (329)
183 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00093 2E-08 69.9 12.8 129 15-167 545-694 (802)
184 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00074 1.6E-08 77.7 13.5 154 16-189 209-389 (852)
185 PRK06067 flagellar accessory p 97.6 0.00038 8.1E-09 67.8 9.7 127 2-135 12-165 (234)
186 TIGR00602 rad24 checkpoint pro 97.6 0.00068 1.5E-08 74.3 12.5 38 2-39 94-134 (637)
187 PF04665 Pox_A32: Poxvirus A32 97.6 0.00043 9.3E-09 65.8 9.6 35 16-50 14-48 (241)
188 PRK09183 transposase/IS protei 97.6 0.00026 5.5E-09 69.5 8.3 34 16-49 103-136 (259)
189 COG1066 Sms Predicted ATP-depe 97.6 0.00041 8.8E-09 69.5 9.5 98 4-109 82-180 (456)
190 PRK06526 transposase; Provisio 97.5 0.00018 3.8E-09 70.1 6.9 34 15-48 98-131 (254)
191 PRK07399 DNA polymerase III su 97.5 0.0027 5.9E-08 64.1 15.6 171 15-196 26-221 (314)
192 COG0466 Lon ATP-dependent Lon 97.5 0.00035 7.6E-09 74.7 9.5 149 2-165 333-508 (782)
193 COG2812 DnaX DNA polymerase II 97.5 0.00077 1.7E-08 71.3 11.9 162 16-192 39-216 (515)
194 PLN00020 ribulose bisphosphate 97.5 0.0022 4.7E-08 64.2 14.0 30 13-42 146-175 (413)
195 PRK12377 putative replication 97.5 0.00041 8.8E-09 67.0 8.9 36 15-50 101-136 (248)
196 COG5238 RNA1 Ran GTPase-activa 97.5 1E-05 2.2E-10 75.4 -1.9 137 416-552 85-253 (388)
197 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0004 8.7E-09 67.6 9.0 63 1-69 7-69 (237)
198 cd01121 Sms Sms (bacterial rad 97.5 0.00045 9.8E-09 71.1 9.5 100 2-108 69-169 (372)
199 COG2255 RuvB Holliday junction 97.5 0.00037 7.9E-09 66.1 7.9 69 124-194 151-221 (332)
200 KOG3665 ZYG-1-like serine/thre 97.5 3.2E-05 7E-10 85.9 0.9 63 584-646 216-285 (699)
201 TIGR02639 ClpA ATP-dependent C 97.5 0.00097 2.1E-08 76.1 12.6 129 16-165 204-358 (731)
202 COG4088 Predicted nucleotide k 97.5 0.0009 2E-08 60.2 9.4 136 16-165 2-139 (261)
203 PRK10536 hypothetical protein; 97.5 0.00015 3.3E-09 69.0 4.9 115 16-135 75-213 (262)
204 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00055 1.2E-08 66.8 8.9 49 2-50 6-60 (235)
205 cd00983 recA RecA is a bacter 97.4 0.00041 9E-09 69.3 7.8 96 3-107 42-143 (325)
206 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 63.7 5.3 101 402-503 44-149 (233)
207 KOG4579 Leucine-rich repeat (L 97.4 1.4E-05 2.9E-10 66.6 -2.3 62 586-649 75-136 (177)
208 PTZ00202 tuzin; Provisional 97.4 0.00075 1.6E-08 68.7 9.4 152 3-165 273-434 (550)
209 TIGR02012 tigrfam_recA protein 97.4 0.00046 9.9E-09 69.0 7.9 96 3-107 42-143 (321)
210 cd01393 recA_like RecA is a b 97.4 0.0012 2.7E-08 63.9 10.9 49 2-50 6-60 (226)
211 PRK04328 hypothetical protein; 97.4 0.0012 2.6E-08 64.6 10.8 49 2-50 10-58 (249)
212 PRK09354 recA recombinase A; P 97.4 0.0005 1.1E-08 69.3 8.2 96 3-107 47-148 (349)
213 KOG3665 ZYG-1-like serine/thre 97.4 5.3E-05 1.1E-09 84.3 1.2 122 586-715 146-272 (699)
214 PRK12608 transcription termina 97.4 0.0007 1.5E-08 68.4 9.0 91 16-109 134-232 (380)
215 PRK07952 DNA replication prote 97.4 0.00053 1.2E-08 66.1 7.9 36 15-50 99-134 (244)
216 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00086 1.9E-08 70.2 9.7 148 15-189 223-395 (802)
217 KOG0991 Replication factor C, 97.4 0.0017 3.7E-08 59.5 10.2 29 12-40 45-73 (333)
218 PRK04132 replication factor C 97.4 0.0018 3.8E-08 73.2 12.7 155 20-196 569-731 (846)
219 PF01695 IstB_IS21: IstB-like 97.3 0.00015 3.2E-09 66.6 3.3 36 15-50 47-82 (178)
220 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0025 5.5E-08 56.5 10.8 114 16-135 3-138 (159)
221 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0032 6.9E-08 65.4 12.9 39 1-39 91-134 (634)
222 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0033 7.1E-08 62.1 12.9 24 16-39 22-45 (262)
223 PRK06921 hypothetical protein; 97.3 0.00042 9.2E-09 68.1 6.5 36 15-50 117-153 (266)
224 PRK04296 thymidine kinase; Pro 97.3 0.00037 7.9E-09 65.1 5.8 111 16-135 3-116 (190)
225 TIGR01243 CDC48 AAA family ATP 97.3 0.0022 4.7E-08 73.6 13.0 149 15-190 487-657 (733)
226 KOG0735 AAA+-type ATPase [Post 97.3 0.0032 7E-08 67.3 12.9 159 14-196 430-616 (952)
227 PRK11331 5-methylcytosine-spec 97.3 0.00041 8.9E-09 71.8 6.4 86 16-110 195-285 (459)
228 KOG0730 AAA+-type ATPase [Post 97.3 0.0021 4.6E-08 68.3 11.5 153 11-190 464-637 (693)
229 CHL00095 clpC Clp protease ATP 97.3 0.0023 4.9E-08 74.1 13.0 141 2-163 189-352 (821)
230 PRK08939 primosomal protein Dn 97.3 0.00083 1.8E-08 67.4 8.3 100 14-134 155-260 (306)
231 KOG1947 Leucine rich repeat pr 97.3 2.1E-05 4.5E-10 86.5 -3.7 35 445-479 187-223 (482)
232 PF00448 SRP54: SRP54-type pro 97.3 0.001 2.2E-08 62.2 8.0 88 15-106 1-92 (196)
233 PRK11823 DNA repair protein Ra 97.3 0.001 2.3E-08 70.7 9.1 49 2-50 67-115 (446)
234 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0022 4.7E-08 62.3 10.7 49 2-50 7-55 (229)
235 PF10236 DAP3: Mitochondrial r 97.3 0.0089 1.9E-07 60.4 15.2 49 146-194 258-307 (309)
236 PF03215 Rad17: Rad17 cell cyc 97.2 0.0014 3.1E-08 70.4 9.9 48 1-50 28-78 (519)
237 PRK10865 protein disaggregatio 97.2 0.0031 6.6E-08 73.0 13.1 131 16-165 200-354 (857)
238 KOG1644 U2-associated snRNP A' 97.2 0.00068 1.5E-08 60.9 5.7 102 448-551 44-150 (233)
239 COG2607 Predicted ATPase (AAA+ 97.2 0.0027 5.8E-08 58.8 9.4 92 16-135 86-183 (287)
240 TIGR00416 sms DNA repair prote 97.2 0.0016 3.4E-08 69.4 9.3 49 2-50 81-129 (454)
241 cd01120 RecA-like_NTPases RecA 97.2 0.002 4.2E-08 58.8 9.0 34 17-50 1-34 (165)
242 COG1484 DnaC DNA replication p 97.2 0.0011 2.4E-08 64.7 7.5 37 14-50 104-140 (254)
243 PRK08118 topology modulation p 97.1 0.0004 8.7E-09 63.2 3.9 33 16-48 2-37 (167)
244 PF07728 AAA_5: AAA domain (dy 97.1 0.00045 9.8E-09 61.0 4.1 22 18-39 2-23 (139)
245 PRK08533 flagellar accessory p 97.1 0.0026 5.6E-08 61.3 9.6 60 3-68 12-71 (230)
246 KOG2004 Mitochondrial ATP-depe 97.1 0.0027 5.9E-08 67.9 10.2 146 2-165 421-596 (906)
247 TIGR01243 CDC48 AAA family ATP 97.1 0.0049 1.1E-07 70.7 13.3 149 15-190 212-381 (733)
248 PF02562 PhoH: PhoH-like prote 97.1 0.00044 9.5E-09 64.2 3.9 111 16-135 20-156 (205)
249 TIGR02655 circ_KaiC circadian 97.1 0.0013 2.8E-08 71.1 8.1 100 2-108 250-364 (484)
250 COG1618 Predicted nucleotide k 97.1 0.00064 1.4E-08 58.7 4.4 35 15-49 5-40 (179)
251 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0056 1.2E-07 71.2 13.6 130 16-164 195-348 (852)
252 COG0470 HolB ATPase involved i 97.1 0.0033 7.1E-08 64.9 10.7 128 3-151 12-167 (325)
253 PRK00771 signal recognition pa 97.1 0.004 8.7E-08 65.4 11.2 37 14-50 94-130 (437)
254 PRK08699 DNA polymerase III su 97.1 0.0037 8.1E-08 63.4 10.5 69 96-164 112-184 (325)
255 KOG0741 AAA+-type ATPase [Post 97.1 0.016 3.5E-07 60.0 14.7 128 12-163 535-684 (744)
256 TIGR02238 recomb_DMC1 meiotic 97.1 0.0027 5.8E-08 64.0 9.2 67 2-73 83-155 (313)
257 PF13177 DNA_pol3_delta2: DNA 97.1 0.0046 1E-07 55.9 9.9 128 15-153 19-162 (162)
258 PHA00729 NTP-binding motif con 97.1 0.0031 6.7E-08 59.3 8.9 27 14-40 16-42 (226)
259 PF13207 AAA_17: AAA domain; P 97.0 0.00056 1.2E-08 58.8 3.7 23 17-39 1-23 (121)
260 PRK11889 flhF flagellar biosyn 97.0 0.0062 1.3E-07 61.9 11.4 37 14-50 240-276 (436)
261 PRK06762 hypothetical protein; 97.0 0.0055 1.2E-07 56.0 10.3 25 15-39 2-26 (166)
262 PF07724 AAA_2: AAA domain (Cd 97.0 0.0011 2.5E-08 60.2 5.7 35 16-50 4-39 (171)
263 cd01131 PilT Pilus retraction 97.0 0.0024 5.3E-08 60.0 8.1 110 16-137 2-111 (198)
264 PRK11034 clpA ATP-dependent Cl 97.0 0.0031 6.7E-08 71.2 9.9 141 3-164 197-361 (758)
265 PF01583 APS_kinase: Adenylyls 97.0 0.00094 2E-08 58.9 4.6 36 15-50 2-37 (156)
266 KOG1514 Origin recognition com 97.0 0.017 3.7E-07 62.1 14.5 144 14-167 421-591 (767)
267 PRK14974 cell division protein 97.0 0.0043 9.4E-08 62.8 9.8 36 14-49 139-174 (336)
268 PRK05541 adenylylsulfate kinas 97.0 0.0017 3.7E-08 60.0 6.5 37 14-50 6-42 (176)
269 KOG0735 AAA+-type ATPase [Post 97.0 0.01 2.2E-07 63.7 12.5 151 15-191 701-871 (952)
270 KOG2035 Replication factor C, 97.0 0.046 1E-06 52.0 15.4 190 12-216 31-259 (351)
271 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0038 8.1E-08 61.5 9.0 42 9-50 30-71 (259)
272 PRK07667 uridine kinase; Provi 96.9 0.0016 3.6E-08 61.0 6.1 41 2-42 4-44 (193)
273 PRK07261 topology modulation p 96.9 0.0042 9.1E-08 56.8 8.4 23 17-39 2-24 (171)
274 PRK04301 radA DNA repair and r 96.9 0.0042 9.1E-08 63.4 9.2 48 3-50 90-143 (317)
275 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0068 1.5E-07 58.5 10.3 49 2-50 3-51 (224)
276 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0033 7.1E-08 61.2 7.8 92 16-109 70-175 (274)
277 TIGR02236 recomb_radA DNA repa 96.9 0.0054 1.2E-07 62.5 9.8 48 3-50 83-136 (310)
278 COG2884 FtsE Predicted ATPase 96.9 0.0064 1.4E-07 54.3 8.7 25 15-39 28-52 (223)
279 COG0467 RAD55 RecA-superfamily 96.9 0.0023 5.1E-08 63.3 6.9 62 3-70 11-72 (260)
280 PF08423 Rad51: Rad51; InterP 96.9 0.0021 4.6E-08 62.9 6.4 65 2-71 25-95 (256)
281 PRK10733 hflB ATP-dependent me 96.9 0.014 3E-07 65.5 13.6 128 16-166 186-336 (644)
282 PRK12723 flagellar biosynthesi 96.9 0.0096 2.1E-07 61.6 11.3 27 14-40 173-199 (388)
283 PRK06696 uridine kinase; Valid 96.8 0.0017 3.7E-08 62.6 5.5 41 2-42 8-49 (223)
284 COG0464 SpoVK ATPases of the A 96.8 0.0098 2.1E-07 65.1 12.2 151 13-188 274-445 (494)
285 PLN03187 meiotic recombination 96.8 0.0039 8.4E-08 63.3 8.2 67 2-73 113-185 (344)
286 TIGR00708 cobA cob(I)alamin ad 96.8 0.0058 1.3E-07 54.9 8.3 119 16-135 6-140 (173)
287 PRK05973 replicative DNA helic 96.8 0.0047 1E-07 59.0 8.2 56 8-69 57-112 (237)
288 cd02027 APSK Adenosine 5'-phos 96.8 0.01 2.2E-07 52.8 10.0 24 17-40 1-24 (149)
289 KOG2228 Origin recognition com 96.8 0.013 2.8E-07 57.2 10.9 147 16-165 50-219 (408)
290 cd03115 SRP The signal recogni 96.8 0.0097 2.1E-07 54.8 10.0 34 17-50 2-35 (173)
291 KOG0734 AAA+-type ATPase conta 96.8 0.0077 1.7E-07 62.3 9.8 127 15-165 337-484 (752)
292 PRK10865 protein disaggregatio 96.8 0.027 5.8E-07 65.4 15.6 35 16-50 599-633 (857)
293 PRK10867 signal recognition pa 96.8 0.0049 1.1E-07 64.6 8.7 29 14-42 99-127 (433)
294 TIGR00763 lon ATP-dependent pr 96.8 0.012 2.6E-07 67.8 12.4 29 14-42 346-374 (775)
295 COG2874 FlaH Predicted ATPases 96.8 0.011 2.3E-07 54.1 9.3 125 3-134 16-167 (235)
296 PF13671 AAA_33: AAA domain; P 96.8 0.0056 1.2E-07 54.3 7.8 23 17-39 1-23 (143)
297 PRK05703 flhF flagellar biosyn 96.7 0.022 4.7E-07 60.2 13.3 36 15-50 221-258 (424)
298 PRK10787 DNA-binding ATP-depen 96.7 0.0099 2.1E-07 67.8 11.1 148 3-165 333-506 (784)
299 KOG0736 Peroxisome assembly fa 96.7 0.027 5.8E-07 61.2 13.4 149 15-189 705-878 (953)
300 TIGR00064 ftsY signal recognit 96.7 0.011 2.5E-07 58.3 10.1 38 13-50 70-107 (272)
301 TIGR02639 ClpA ATP-dependent C 96.7 0.012 2.6E-07 67.4 11.7 24 16-39 485-508 (731)
302 PTZ00035 Rad51 protein; Provis 96.7 0.0089 1.9E-07 61.0 9.5 38 2-39 105-142 (337)
303 KOG4579 Leucine-rich repeat (L 96.7 0.0001 2.2E-09 61.6 -3.7 77 382-458 57-135 (177)
304 PRK05986 cob(I)alamin adenolsy 96.7 0.0083 1.8E-07 54.8 8.2 117 15-135 22-158 (191)
305 PF06745 KaiC: KaiC; InterPro 96.6 0.0021 4.5E-08 62.3 4.6 99 1-106 5-124 (226)
306 KOG2739 Leucine-rich acidic nu 96.6 0.00097 2.1E-08 62.7 2.1 107 444-552 41-154 (260)
307 KOG2170 ATPase of the AAA+ sup 96.6 0.0098 2.1E-07 57.2 8.5 97 5-119 99-202 (344)
308 TIGR03346 chaperone_ClpB ATP-d 96.6 0.028 6.2E-07 65.4 14.3 35 16-50 596-630 (852)
309 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0083 1.8E-07 69.2 9.8 30 15-44 596-625 (852)
310 TIGR03499 FlhF flagellar biosy 96.6 0.01 2.2E-07 59.2 9.1 37 14-50 193-231 (282)
311 PF14532 Sigma54_activ_2: Sigm 96.6 0.0013 2.9E-08 57.8 2.5 39 2-40 8-46 (138)
312 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0084 1.8E-07 60.6 8.5 49 2-50 83-137 (316)
313 PRK08233 hypothetical protein; 96.6 0.0077 1.7E-07 56.1 7.7 26 15-40 3-28 (182)
314 PF08433 KTI12: Chromatin asso 96.6 0.0049 1.1E-07 60.6 6.5 35 16-50 2-36 (270)
315 KOG1947 Leucine rich repeat pr 96.6 0.00023 5E-09 78.2 -3.1 108 587-695 268-389 (482)
316 KOG0727 26S proteasome regulat 96.6 0.014 3.1E-07 54.2 8.9 30 13-42 187-216 (408)
317 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.019 4.2E-07 53.4 10.3 23 17-39 1-23 (183)
318 PF13604 AAA_30: AAA domain; P 96.5 0.0046 9.9E-08 58.0 6.0 101 16-135 19-131 (196)
319 PF00485 PRK: Phosphoribulokin 96.5 0.013 2.8E-07 55.1 9.1 26 17-42 1-26 (194)
320 TIGR01425 SRP54_euk signal rec 96.5 0.017 3.7E-07 60.2 10.5 35 15-49 100-134 (429)
321 KOG0743 AAA+-type ATPase [Post 96.5 0.051 1.1E-06 55.7 13.5 151 12-198 232-411 (457)
322 PRK13695 putative NTPase; Prov 96.5 0.0049 1.1E-07 56.8 6.0 33 17-49 2-35 (174)
323 PF00910 RNA_helicase: RNA hel 96.5 0.0017 3.7E-08 54.1 2.5 26 18-43 1-26 (107)
324 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.017 3.8E-07 69.4 11.4 26 14-39 1629-1654(2281)
325 cd01122 GP4d_helicase GP4d_hel 96.5 0.014 3E-07 58.4 9.5 53 13-71 28-81 (271)
326 cd03228 ABCC_MRP_Like The MRP 96.5 0.017 3.6E-07 53.0 9.3 24 16-39 29-52 (171)
327 PF07726 AAA_3: ATPase family 96.5 0.0017 3.7E-08 54.5 2.3 28 18-45 2-29 (131)
328 PRK09519 recA DNA recombinatio 96.5 0.0081 1.7E-07 67.1 8.2 97 2-107 46-148 (790)
329 COG0563 Adk Adenylate kinase a 96.5 0.01 2.3E-07 54.2 7.7 23 17-39 2-24 (178)
330 TIGR00959 ffh signal recogniti 96.5 0.021 4.5E-07 60.0 10.8 26 15-40 99-124 (428)
331 PRK09270 nucleoside triphospha 96.5 0.015 3.3E-07 56.2 9.2 39 4-43 23-61 (229)
332 PRK12724 flagellar biosynthesi 96.5 0.035 7.6E-07 57.4 12.1 25 15-39 223-247 (432)
333 COG0542 clpA ATP-binding subun 96.4 0.015 3.2E-07 64.6 9.9 97 15-122 521-620 (786)
334 PRK07132 DNA polymerase III su 96.4 0.13 2.8E-06 51.4 15.8 131 14-164 17-161 (299)
335 COG1875 NYN ribonuclease and A 96.4 0.012 2.6E-07 58.1 8.2 120 12-135 242-388 (436)
336 COG0468 RecA RecA/RadA recombi 96.4 0.012 2.6E-07 57.5 8.1 98 4-106 49-150 (279)
337 PF00154 RecA: recA bacterial 96.4 0.014 3E-07 58.4 8.6 90 11-109 49-143 (322)
338 PRK14722 flhF flagellar biosyn 96.4 0.013 2.9E-07 59.9 8.7 86 15-107 137-225 (374)
339 COG0529 CysC Adenylylsulfate k 96.4 0.0085 1.8E-07 52.9 6.2 31 14-44 22-52 (197)
340 KOG0731 AAA+-type ATPase conta 96.4 0.037 8E-07 61.1 12.4 153 15-193 344-521 (774)
341 PF06309 Torsin: Torsin; Inte 96.4 0.013 2.8E-07 49.1 7.0 36 3-38 40-76 (127)
342 PLN03186 DNA repair protein RA 96.4 0.02 4.4E-07 58.2 9.8 67 2-73 110-182 (342)
343 COG0572 Udk Uridine kinase [Nu 96.4 0.0081 1.8E-07 55.8 6.3 30 13-42 6-35 (218)
344 PF00158 Sigma54_activat: Sigm 96.4 0.0046 1E-07 56.1 4.6 36 3-38 10-45 (168)
345 TIGR02858 spore_III_AA stage I 96.4 0.015 3.3E-07 57.1 8.5 117 14-137 110-231 (270)
346 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0079 1.7E-07 61.8 6.8 102 14-134 61-167 (362)
347 COG0003 ArsA Predicted ATPase 96.4 0.0054 1.2E-07 61.4 5.4 49 15-67 2-50 (322)
348 cd03283 ABC_MutS-like MutS-lik 96.4 0.012 2.7E-07 55.2 7.6 23 16-38 26-48 (199)
349 COG1419 FlhF Flagellar GTP-bin 96.3 0.025 5.4E-07 57.5 9.9 36 15-50 203-240 (407)
350 PRK12726 flagellar biosynthesi 96.3 0.043 9.3E-07 55.8 11.4 88 14-107 205-295 (407)
351 KOG2123 Uncharacterized conser 96.3 0.00012 2.6E-09 68.7 -6.1 96 380-476 21-123 (388)
352 PF03308 ArgK: ArgK protein; 96.3 0.0074 1.6E-07 57.3 5.6 45 5-49 19-63 (266)
353 PF13238 AAA_18: AAA domain; P 96.3 0.0037 8.1E-08 54.2 3.4 22 18-39 1-22 (129)
354 cd00984 DnaB_C DnaB helicase C 96.3 0.03 6.6E-07 54.8 10.2 61 4-71 3-64 (242)
355 TIGR01420 pilT_fam pilus retra 96.2 0.016 3.4E-07 59.7 8.4 108 16-135 123-230 (343)
356 KOG2739 Leucine-rich acidic nu 96.2 0.0021 4.5E-08 60.5 1.6 84 419-502 61-151 (260)
357 PF02374 ArsA_ATPase: Anion-tr 96.2 0.0053 1.2E-07 61.8 4.6 46 16-65 2-47 (305)
358 PF13245 AAA_19: Part of AAA d 96.2 0.0098 2.1E-07 45.6 5.0 23 15-37 10-32 (76)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.018 3.9E-07 51.0 7.5 24 16-39 27-50 (144)
360 cd01124 KaiC KaiC is a circadi 96.2 0.0081 1.8E-07 56.2 5.6 46 17-68 1-46 (187)
361 cd03238 ABC_UvrA The excision 96.2 0.024 5.1E-07 51.9 8.4 22 16-37 22-43 (176)
362 cd02019 NK Nucleoside/nucleoti 96.2 0.0045 9.9E-08 46.6 3.1 23 17-39 1-23 (69)
363 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.0069 1.5E-07 57.6 4.9 23 15-37 29-51 (213)
364 CHL00095 clpC Clp protease ATP 96.2 0.021 4.6E-07 66.2 9.8 94 16-120 540-636 (821)
365 cd01125 repA Hexameric Replica 96.2 0.072 1.6E-06 51.9 12.2 24 17-40 3-26 (239)
366 KOG0729 26S proteasome regulat 96.2 0.014 3.1E-07 54.7 6.6 72 12-107 208-280 (435)
367 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0057 1.2E-07 61.8 4.4 30 12-41 75-104 (361)
368 TIGR01069 mutS2 MutS2 family p 96.1 0.022 4.7E-07 64.9 9.5 179 15-216 322-521 (771)
369 KOG1969 DNA replication checkp 96.1 0.015 3.2E-07 62.7 7.5 76 11-109 322-399 (877)
370 PF13306 LRR_5: Leucine rich r 96.1 0.02 4.3E-07 49.6 7.3 104 419-527 8-112 (129)
371 KOG0739 AAA+-type ATPase [Post 96.1 0.053 1.2E-06 52.0 10.2 27 14-40 165-191 (439)
372 PRK09302 circadian clock prote 96.1 0.021 4.5E-07 62.7 8.9 99 2-107 260-373 (509)
373 cd03247 ABCC_cytochrome_bd The 96.1 0.047 1E-06 50.5 10.0 24 16-39 29-52 (178)
374 PRK13531 regulatory ATPase Rav 96.1 0.028 6E-07 59.1 9.1 25 16-40 40-64 (498)
375 PRK15453 phosphoribulokinase; 96.1 0.036 7.8E-07 53.9 9.1 29 13-41 3-31 (290)
376 COG4240 Predicted kinase [Gene 96.0 0.015 3.2E-07 53.4 6.1 87 12-99 47-135 (300)
377 TIGR03574 selen_PSTK L-seryl-t 96.0 0.014 3.1E-07 57.3 6.6 26 17-42 1-26 (249)
378 PTZ00088 adenylate kinase 1; P 96.0 0.017 3.8E-07 55.3 6.9 23 17-39 8-30 (229)
379 PF03266 NTPase_1: NTPase; In 96.0 0.0081 1.8E-07 54.5 4.4 24 18-41 2-25 (168)
380 TIGR03575 selen_PSTK_euk L-ser 96.0 0.052 1.1E-06 55.0 10.5 24 17-40 1-24 (340)
381 cd02025 PanK Pantothenate kina 96.0 0.028 6.2E-07 53.7 8.3 25 17-41 1-25 (220)
382 smart00534 MUTSac ATPase domai 96.0 0.017 3.8E-07 53.7 6.6 21 17-37 1-21 (185)
383 cd03230 ABC_DR_subfamily_A Thi 96.0 0.024 5.3E-07 52.1 7.5 23 16-38 27-49 (173)
384 PTZ00301 uridine kinase; Provi 96.0 0.007 1.5E-07 57.1 3.8 29 15-43 3-31 (210)
385 PRK00409 recombination and DNA 95.9 0.034 7.3E-07 63.6 9.9 176 14-216 326-526 (782)
386 KOG0738 AAA+-type ATPase [Post 95.9 0.017 3.8E-07 57.4 6.4 28 16-43 246-273 (491)
387 PF13481 AAA_25: AAA domain; P 95.9 0.011 2.3E-07 55.7 5.0 26 16-41 33-58 (193)
388 KOG0742 AAA+-type ATPase [Post 95.9 0.04 8.6E-07 55.2 8.8 125 15-164 384-527 (630)
389 cd03214 ABC_Iron-Siderophores_ 95.9 0.046 9.9E-07 50.6 9.0 120 16-138 26-161 (180)
390 PF00006 ATP-synt_ab: ATP synt 95.9 0.023 5E-07 53.6 7.0 88 16-109 16-117 (215)
391 cd03222 ABC_RNaseL_inhibitor T 95.9 0.028 6E-07 51.5 7.3 23 16-38 26-48 (177)
392 cd03278 ABC_SMC_barmotin Barmo 95.9 0.063 1.4E-06 50.4 9.9 21 17-37 24-44 (197)
393 TIGR02902 spore_lonB ATP-depen 95.9 0.035 7.6E-07 60.7 9.3 25 15-39 86-110 (531)
394 cd02028 UMPK_like Uridine mono 95.9 0.017 3.7E-07 53.3 5.9 26 17-42 1-26 (179)
395 cd03223 ABCD_peroxisomal_ALDP 95.9 0.037 8E-07 50.4 8.0 24 16-39 28-51 (166)
396 cd02034 CooC The accessory pro 95.9 0.042 9.1E-07 46.3 7.7 33 18-50 2-34 (116)
397 PRK04040 adenylate kinase; Pro 95.8 0.0094 2E-07 55.3 4.1 25 16-40 3-27 (188)
398 TIGR00150 HI0065_YjeE ATPase, 95.8 0.0088 1.9E-07 51.3 3.6 36 4-39 11-46 (133)
399 TIGR02655 circ_KaiC circadian 95.8 0.019 4.1E-07 62.3 7.0 61 2-68 8-69 (484)
400 PRK05480 uridine/cytidine kina 95.8 0.009 1.9E-07 57.0 4.1 27 13-39 4-30 (209)
401 COG1102 Cmk Cytidylate kinase 95.8 0.0076 1.7E-07 52.3 3.0 23 17-39 2-24 (179)
402 COG4608 AppF ABC-type oligopep 95.8 0.024 5.3E-07 54.3 6.7 124 16-142 40-177 (268)
403 TIGR01817 nifA Nif-specific re 95.8 0.082 1.8E-06 58.4 12.0 36 15-50 219-254 (534)
404 TIGR00455 apsK adenylylsulfate 95.8 0.07 1.5E-06 49.6 9.8 28 14-41 17-44 (184)
405 COG5635 Predicted NTPase (NACH 95.8 0.012 2.5E-07 68.4 5.5 139 16-162 223-375 (824)
406 PF12775 AAA_7: P-loop contain 95.8 0.0075 1.6E-07 59.6 3.4 24 16-39 34-57 (272)
407 PF00625 Guanylate_kin: Guanyl 95.8 0.0094 2E-07 55.4 3.8 36 15-50 2-37 (183)
408 cd03243 ABC_MutS_homologs The 95.8 0.0082 1.8E-07 56.8 3.5 22 16-37 30-51 (202)
409 PRK10416 signal recognition pa 95.8 0.029 6.2E-07 56.8 7.5 36 14-49 113-148 (318)
410 PRK00279 adk adenylate kinase; 95.8 0.043 9.3E-07 52.5 8.4 23 17-39 2-24 (215)
411 cd03232 ABC_PDR_domain2 The pl 95.7 0.063 1.4E-06 50.3 9.4 22 16-37 34-55 (192)
412 PRK14528 adenylate kinase; Pro 95.7 0.028 6E-07 52.3 6.8 24 16-39 2-25 (186)
413 PRK08356 hypothetical protein; 95.7 0.09 2E-06 49.4 10.4 21 16-36 6-26 (195)
414 cd01130 VirB11-like_ATPase Typ 95.7 0.0056 1.2E-07 57.0 2.1 96 15-118 25-121 (186)
415 PRK12678 transcription termina 95.7 0.02 4.4E-07 60.8 6.3 92 16-109 417-515 (672)
416 COG0125 Tmk Thymidylate kinase 95.7 0.036 7.9E-07 51.9 7.4 35 16-50 4-38 (208)
417 PF03205 MobB: Molybdopterin g 95.7 0.017 3.6E-07 50.6 4.9 35 16-50 1-36 (140)
418 PRK14529 adenylate kinase; Pro 95.7 0.054 1.2E-06 51.4 8.6 89 17-113 2-93 (223)
419 PF06414 Zeta_toxin: Zeta toxi 95.7 0.053 1.1E-06 51.1 8.6 99 12-118 12-114 (199)
420 COG1136 SalX ABC-type antimicr 95.7 0.07 1.5E-06 50.3 9.1 22 16-37 32-53 (226)
421 COG1703 ArgK Putative periplas 95.7 0.021 4.6E-07 55.1 5.8 45 5-49 41-85 (323)
422 PRK05022 anaerobic nitric oxid 95.7 0.095 2.1E-06 57.4 11.7 47 4-50 199-245 (509)
423 PRK06547 hypothetical protein; 95.7 0.011 2.4E-07 53.8 3.8 27 13-39 13-39 (172)
424 cd03233 ABC_PDR_domain1 The pl 95.7 0.061 1.3E-06 50.8 9.0 24 16-39 34-57 (202)
425 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.043 9.4E-07 52.6 7.8 22 16-37 31-52 (254)
426 TIGR00235 udk uridine kinase. 95.7 0.014 2.9E-07 55.6 4.5 28 13-40 4-31 (207)
427 TIGR01360 aden_kin_iso1 adenyl 95.7 0.011 2.3E-07 55.4 3.7 26 14-39 2-27 (188)
428 PRK12727 flagellar biosynthesi 95.6 0.038 8.3E-07 58.7 8.0 27 15-41 350-376 (559)
429 cd01428 ADK Adenylate kinase ( 95.6 0.078 1.7E-06 49.8 9.7 23 17-39 1-23 (194)
430 PRK00889 adenylylsulfate kinas 95.6 0.017 3.8E-07 53.2 5.1 27 15-41 4-30 (175)
431 cd01135 V_A-ATPase_B V/A-type 95.6 0.042 9.1E-07 53.4 7.7 91 16-109 70-178 (276)
432 PRK09302 circadian clock prote 95.6 0.025 5.5E-07 62.0 7.0 63 2-70 18-81 (509)
433 COG0378 HypB Ni2+-binding GTPa 95.6 0.022 4.7E-07 51.5 5.2 36 15-50 13-48 (202)
434 COG0552 FtsY Signal recognitio 95.6 0.046 1E-06 53.9 7.9 38 12-49 136-173 (340)
435 cd03216 ABC_Carb_Monos_I This 95.6 0.027 5.8E-07 51.2 6.0 114 16-137 27-144 (163)
436 KOG1532 GTPase XAB1, interacts 95.6 0.072 1.6E-06 50.5 8.7 33 12-44 16-48 (366)
437 COG3854 SpoIIIAA ncharacterize 95.6 0.036 7.8E-07 51.2 6.5 111 16-136 138-254 (308)
438 COG3910 Predicted ATPase [Gene 95.6 0.17 3.7E-06 45.3 10.5 24 14-37 36-59 (233)
439 PRK10751 molybdopterin-guanine 95.6 0.023 5.1E-07 51.3 5.4 28 14-41 5-32 (173)
440 KOG2123 Uncharacterized conser 95.6 0.00054 1.2E-08 64.5 -5.2 100 399-500 18-123 (388)
441 PRK03839 putative kinase; Prov 95.6 0.012 2.5E-07 54.7 3.6 23 17-39 2-24 (180)
442 PRK14738 gmk guanylate kinase; 95.5 0.012 2.7E-07 55.7 3.8 32 7-38 5-36 (206)
443 PRK00131 aroK shikimate kinase 95.5 0.012 2.6E-07 54.3 3.6 25 15-39 4-28 (175)
444 COG0703 AroK Shikimate kinase 95.5 0.11 2.3E-06 46.6 9.2 28 16-43 3-30 (172)
445 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.067 1.4E-06 50.5 8.6 23 16-38 27-49 (200)
446 PRK10820 DNA-binding transcrip 95.5 0.086 1.9E-06 57.7 10.6 23 16-38 228-250 (520)
447 cd03246 ABCC_Protease_Secretio 95.5 0.041 8.9E-07 50.6 6.9 24 16-39 29-52 (173)
448 cd00227 CPT Chloramphenicol (C 95.5 0.013 2.9E-07 54.0 3.6 25 16-40 3-27 (175)
449 PRK11034 clpA ATP-dependent Cl 95.5 0.042 9.2E-07 62.2 8.2 24 16-39 489-512 (758)
450 PF02367 UPF0079: Uncharacteri 95.5 0.014 3.1E-07 49.2 3.5 36 4-39 4-39 (123)
451 cd00046 DEXDc DEAD-like helica 95.5 0.052 1.1E-06 47.6 7.4 34 17-50 2-37 (144)
452 TIGR01650 PD_CobS cobaltochela 95.5 0.14 3E-06 51.4 10.8 27 16-42 65-91 (327)
453 PRK03846 adenylylsulfate kinas 95.5 0.024 5.1E-07 53.5 5.3 37 13-49 22-58 (198)
454 cd01129 PulE-GspE PulE/GspE Th 95.4 0.06 1.3E-06 53.1 8.3 102 16-133 81-182 (264)
455 TIGR02974 phageshock_pspF psp 95.4 0.029 6.2E-07 57.3 6.3 36 3-38 10-45 (329)
456 PRK10875 recD exonuclease V su 95.4 0.072 1.6E-06 58.9 9.7 27 15-41 167-193 (615)
457 COG0396 sufC Cysteine desulfur 95.4 0.098 2.1E-06 48.6 8.9 59 86-146 151-215 (251)
458 PRK05342 clpX ATP-dependent pr 95.4 0.021 4.6E-07 59.8 5.4 25 16-40 109-133 (412)
459 COG2019 AdkA Archaeal adenylat 95.4 0.017 3.7E-07 50.4 3.8 25 15-39 4-28 (189)
460 TIGR01351 adk adenylate kinase 95.4 0.062 1.4E-06 51.2 8.2 22 18-39 2-23 (210)
461 cd02117 NifH_like This family 95.4 0.018 3.9E-07 55.0 4.5 35 16-50 1-35 (212)
462 PF00406 ADK: Adenylate kinase 95.4 0.029 6.4E-07 50.2 5.6 20 20-39 1-20 (151)
463 COG4618 ArpD ABC-type protease 95.4 0.038 8.2E-07 57.3 6.8 22 16-37 363-384 (580)
464 PRK15429 formate hydrogenlyase 95.4 0.14 3.1E-06 58.4 12.4 36 15-50 399-434 (686)
465 PRK05800 cobU adenosylcobinami 95.4 0.069 1.5E-06 48.6 7.9 80 17-106 3-85 (170)
466 cd00071 GMPK Guanosine monopho 95.4 0.011 2.5E-07 51.7 2.7 26 17-42 1-26 (137)
467 cd03280 ABC_MutS2 MutS2 homolo 95.4 0.074 1.6E-06 50.2 8.4 23 15-37 28-50 (200)
468 PLN02674 adenylate kinase 95.4 0.093 2E-06 50.5 9.0 27 13-39 29-55 (244)
469 PF13306 LRR_5: Leucine rich r 95.4 0.061 1.3E-06 46.5 7.3 116 399-520 11-128 (129)
470 cd00544 CobU Adenosylcobinamid 95.3 0.081 1.8E-06 48.0 8.2 80 17-106 1-82 (169)
471 PRK00625 shikimate kinase; Pro 95.3 0.016 3.4E-07 52.9 3.4 24 17-40 2-25 (173)
472 PF00437 T2SE: Type II/IV secr 95.3 0.049 1.1E-06 54.3 7.4 116 4-135 116-232 (270)
473 COG3640 CooC CO dehydrogenase 95.3 0.032 6.8E-07 51.9 5.3 34 17-50 2-36 (255)
474 PRK05439 pantothenate kinase; 95.3 0.078 1.7E-06 53.0 8.5 30 12-41 83-112 (311)
475 TIGR01287 nifH nitrogenase iro 95.3 0.019 4.2E-07 57.4 4.4 35 16-50 1-35 (275)
476 PRK06217 hypothetical protein; 95.3 0.039 8.4E-07 51.3 6.1 23 17-39 3-25 (183)
477 PRK07276 DNA polymerase III su 95.3 0.9 2E-05 45.1 15.8 67 96-163 103-173 (290)
478 TIGR02788 VirB11 P-type DNA tr 95.3 0.03 6.6E-07 56.7 5.7 109 15-135 144-253 (308)
479 TIGR00554 panK_bact pantothena 95.2 0.062 1.4E-06 53.3 7.7 28 13-40 60-87 (290)
480 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.069 1.5E-06 50.3 7.7 23 15-37 29-51 (204)
481 cd01672 TMPK Thymidine monopho 95.2 0.042 9.1E-07 51.9 6.4 25 17-41 2-26 (200)
482 COG1936 Predicted nucleotide k 95.2 0.015 3.3E-07 51.2 3.0 20 17-36 2-21 (180)
483 PRK13236 nitrogenase reductase 95.2 0.028 6.1E-07 56.6 5.4 38 13-50 4-41 (296)
484 PF03796 DnaB_C: DnaB-like hel 95.2 0.11 2.3E-06 51.5 9.4 64 3-73 8-72 (259)
485 COG0194 Gmk Guanylate kinase [ 95.2 0.019 4.1E-07 51.5 3.5 25 15-39 4-28 (191)
486 PRK05917 DNA polymerase III su 95.2 0.59 1.3E-05 46.2 14.1 121 14-152 18-154 (290)
487 PF09848 DUF2075: Uncharacteri 95.2 0.055 1.2E-06 56.2 7.5 35 16-50 2-38 (352)
488 PRK14737 gmk guanylate kinase; 95.2 0.017 3.8E-07 53.4 3.4 26 14-39 3-28 (186)
489 PLN02348 phosphoribulokinase 95.2 0.087 1.9E-06 54.0 8.6 30 12-41 46-75 (395)
490 cd02029 PRK_like Phosphoribulo 95.2 0.079 1.7E-06 51.2 7.8 26 17-42 1-26 (277)
491 PRK05818 DNA polymerase III su 95.2 1.9 4.1E-05 41.8 17.0 108 16-135 8-128 (261)
492 PRK13768 GTPase; Provisional 95.2 0.029 6.2E-07 55.0 5.0 34 16-49 3-36 (253)
493 PRK12597 F0F1 ATP synthase sub 95.1 0.063 1.4E-06 56.7 7.7 89 16-107 144-247 (461)
494 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.044 9.5E-07 49.5 5.9 116 16-140 26-145 (157)
495 cd03287 ABC_MSH3_euk MutS3 hom 95.1 0.026 5.6E-07 53.8 4.5 23 15-37 31-53 (222)
496 COG0488 Uup ATPase components 95.1 0.15 3.2E-06 55.3 10.6 129 16-150 349-510 (530)
497 TIGR02322 phosphon_PhnN phosph 95.1 0.018 3.9E-07 53.3 3.3 25 16-40 2-26 (179)
498 PRK13230 nitrogenase reductase 95.1 0.027 5.8E-07 56.5 4.8 35 16-50 2-36 (279)
499 cd02021 GntK Gluconate kinase 95.1 0.016 3.4E-07 51.9 2.9 23 17-39 1-23 (150)
500 TIGR01447 recD exodeoxyribonuc 95.1 0.084 1.8E-06 58.2 8.9 26 15-40 160-185 (586)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.8e-66 Score=606.57 Aligned_cols=673 Identities=35% Similarity=0.589 Sum_probs=520.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeec-----chhhcc------cChHHHHHHHHH
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV-----REVSVT------RGLVPLQEQLLS 70 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~-----~~~~~~------~~~~~~~~~i~~ 70 (737)
+++..++....++.++|+|+|+||+||||||+.+|+++...|+..+|+... ...... .....+.++++.
T Consensus 194 ~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~ 273 (1153)
T PLN03210 194 AKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLS 273 (1153)
T ss_pred HHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHH
Confidence 566777776777899999999999999999999999999999988887531 000000 011234445555
Q ss_pred HHhhcccccccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccEEEcC
Q 004686 71 EVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (737)
Q Consensus 71 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~ 150 (737)
++......... ....+++.++++|+|||+||||+.++|+.+.......++|++||||||+..++...+..+.++++
T Consensus 274 ~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 274 EILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 54332211111 12567788999999999999999999999987666667899999999999988777777899999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcCCchhHHHHHHhh
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPNEKVLKVLRIS 230 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 230 (737)
.+++++|++||.+.++++..+.+...+.+.+|+++|+|+|+|++.+|++|++++..+|.+.++++....+..+..+++.|
T Consensus 350 ~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~S 429 (1153)
T PLN03210 350 LPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVS 429 (1153)
T ss_pred CCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHh
Confidence 99999999999999987766666677889999999999999999999999999999999999999888888899999999
Q ss_pred hcCCCh-hhHhhhheeecccCCCCHHHHHHhhhcCCCCchhhHHHHhhcccceeecCEEeHhHHHHHHHHHHHhhhcCCC
Q 004686 231 YDGLDR-RDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIVREHHSDK 309 (737)
Q Consensus 231 ~~~L~~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~l~~~~~~~~~~h~l~~~~~~~~~~~~~~~~ 309 (737)
|+.|++ ..|.||+++|+|+.+.+.+....++...++..+.+++.|++++|++...+++.||+++|++++++++++. ..
T Consensus 430 Yd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~ 508 (1153)
T PLN03210 430 YDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NE 508 (1153)
T ss_pred hhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CC
Confidence 999986 5899999999999998888877878777887888899999999999988899999999999999999886 67
Q ss_pred CCCcccccccchHHHHhhcccCCceEEEEEecCCcc--cccChhhhhcCCCCceEEEcccc----------cCCCccccc
Q 004686 310 PGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPEM--TELEAKSFSTMSNLRLLEINNLY----------SSGNLEYLS 377 (737)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~----------~~~~~~~~~ 377 (737)
++.+.++|...++..++.+..+...++.+.+...+. ..+...+|.++++|+.|.+..+. +++.+....
T Consensus 509 ~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp 588 (1153)
T PLN03210 509 PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP 588 (1153)
T ss_pred CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcC
Confidence 888889999999999999999999999998876643 34667789999999999996543 222333345
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcc
Q 004686 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (737)
.+++.|.+.++++..+|..+.+.+|+.|+++++.+..+|.++..+++|+.|+++++......|.+..+++|++|++++|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 67999999999999999999999999999999999999999999999999999998877888888899999999999999
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccc
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSI 537 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 537 (737)
....+|..+.++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.++.+|..+
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc
Confidence 889999999999999999999998888998866 7999999999999877777653 468999999999999999865
Q ss_pred ccCCCCcEEEccCCCC-CCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCC
Q 004686 538 VQLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (737)
Q Consensus 538 ~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 616 (737)
.+++|++|.+.++.. ........ . .. .....+++|+.|++++|. ....+|..++++++|+
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~--l--------------~~-~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQP--L--------------TP-LMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLE 805 (1153)
T ss_pred -cccccccccccccchhhccccccc--c--------------ch-hhhhccccchheeCCCCC-CccccChhhhCCCCCC
Confidence 688899998876441 11000000 0 00 001123455555555554 2233455555555555
Q ss_pred eEeCCCC-CCcccchhhhcCCCCCEEccccCccCCCCCCCC-----------------------Cccceeeccccccccc
Q 004686 617 AIDLSGN-NFFSLPSSINQLLKLKILCLEKCRNLKSLPELP-----------------------PEIVFVGAEDCTSLET 672 (737)
Q Consensus 617 ~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~-----------------------~~L~~l~l~~c~~L~~ 672 (737)
.|++++| .+..+|..+ .+++|+.|+|++|..++.+|..+ ++|+.|++.+|++|+.
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 5555554 334444333 44555555555555444444332 4566666666776666
Q ss_pred ccccccccCCCCceEEEecCCCccccccccch
Q 004686 673 ISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (737)
Q Consensus 673 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 704 (737)
+..... .........+.+|++|+.+.+..+.
T Consensus 885 l~~~~~-~L~~L~~L~l~~C~~L~~~~l~~~~ 915 (1153)
T PLN03210 885 VSLNIS-KLKHLETVDFSDCGALTEASWNGSP 915 (1153)
T ss_pred cCcccc-cccCCCeeecCCCcccccccCCCCc
Confidence 654322 2222334567778888777665433
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-56 Score=494.01 Aligned_cols=575 Identities=25% Similarity=0.311 Sum_probs=398.2
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHH--H-HhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--T-LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~--~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 78 (737)
+++-+.|...++ .+++|+||||+||||||+++.+ . ++.+|+.++||. +++..+...++++|+..++.....
T Consensus 168 ~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 168 EKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcc
Confidence 344455555444 8999999999999999999998 3 789999999999 888999999999999987663332
Q ss_pred -cccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhh-cCcccEEEcCCCChhh
Q 004686 79 -IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVRGLDYVE 156 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l~~l~~~~ 156 (737)
.....+.....+.+.+++|||+||+||+|+..+|+.+..+++....|++|++|||+..++.. ++....++++-|+.++
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 22234677889999999999999999999999999999999988899999999999999998 7777889999999999
Q ss_pred HHHHHhhhccCC-CCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHHhcC-------CchhHHHHH
Q 004686 157 ALQLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEA-------PNEKVLKVL 227 (737)
Q Consensus 157 ~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~ 227 (737)
||++|.+.++.. ....+..++.+++++++|+|+|+|+..+|+.|+. .+..+|+++.+.+... ..+.+..++
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 999999999765 3333457899999999999999999999999998 5788999999977543 135678999
Q ss_pred HhhhcCCChhhHhhhheeecccCCCC--HHHHHHhhhcCCCCc------------hhhHHHHhhcccceeec-----CEE
Q 004686 228 RISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNS------------DIGIRELLDKSLITIVN-----NKL 288 (737)
Q Consensus 228 ~~s~~~L~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~------------~~~l~~L~~~~l~~~~~-----~~~ 288 (737)
..||+.||++.|.||+|||+||+++. .+.++..|+++|++. ..++.+|++++++.... ..+
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 99999999999999999999999995 578999999999753 56799999999999985 679
Q ss_pred eHhHHHHHHHHHHHhhhcCCCCCCcccccccchHHHHhhcccCCceEEEEEecCCcccccChhhhhcCCCCceEEEcccc
Q 004686 289 WMHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLY 368 (737)
Q Consensus 289 ~~h~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 368 (737)
+||+++||+|.+.+.+....... .+.-.. ..
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~-------------------------~iv~~~------------------------~~ 512 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEEN-------------------------QIVSDG------------------------VG 512 (889)
T ss_pred EeeHHHHHHHHHHhccccccccc-------------------------eEEECC------------------------cC
Confidence 99999999999999976511000 000000 00
Q ss_pred cCCC-ccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCc--ccccccc-ccCCCCCcEEecCCCcCCCCCCC-CC
Q 004686 369 SSGN-LEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR--IKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FT 443 (737)
Q Consensus 369 ~~~~-~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~--i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~ 443 (737)
.... -...+...+...+.++....+++....++|++|-+.+|. +..++.. |..++.|++|||++|......|. ++
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 0000 011123455555666666666666655567777776664 4444433 55667777777766655555443 56
Q ss_pred CCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCC--CCcccCcccCCCCccc
Q 004686 444 GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL--KLEKLPQDLGEVECLE 521 (737)
Q Consensus 444 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~ 521 (737)
++-+|++|+++++. +..+|..+.++++|.+|++..+.....+|.....+++|++|.+.... ........+.++.+|+
T Consensus 593 ~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 66666666666643 34666666666666666666655444455544556666666654422 1111122223333333
Q ss_pred EEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCC
Q 004686 522 ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLL 601 (737)
Q Consensus 522 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 601 (737)
.+....... .+...+..+++|..+...- .. ..........++..+.+|+.|.+.+|...
T Consensus 672 ~ls~~~~s~-~~~e~l~~~~~L~~~~~~l------------------~~--~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 672 NLSITISSV-LLLEDLLGMTRLRSLLQSL------------------SI--EGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hheeecchh-HhHhhhhhhHHHHHHhHhh------------------hh--cccccceeecccccccCcceEEEEcCCCc
Confidence 333322211 1111111122222111100 00 00122233455778899999999999854
Q ss_pred CCCccccc-----c-CCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCC
Q 004686 602 EGAIPSDI-----G-SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 654 (737)
Q Consensus 602 ~~~~~~~l-----~-~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~ 654 (737)
+..+ .+. . .++++..+.+.+|.....+.+..-.|+|+.|.+..|+..+.+.+
T Consensus 731 e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 731 EIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 3111 111 1 14455666666666555565666789999999999998877553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.2e-36 Score=305.17 Aligned_cols=265 Identities=32% Similarity=0.494 Sum_probs=210.2
Q ss_pred ChhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH--HhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc
Q 004686 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (737)
Q Consensus 1 ~~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 78 (737)
+++|.++|....++.++|+|+|+||+|||+||++++++ ++++|+.++|+. +....+..+++++++.++......
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccccccc
Confidence 36788888886688999999999999999999999987 889999999998 666667789999999998776443
Q ss_pred --cccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcCc-ccEEEcCCCChh
Q 004686 79 --IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGV-TNTYKVRGLDYV 155 (737)
Q Consensus 79 --~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~-~~~~~l~~l~~~ 155 (737)
...+.......+.+.++++++||||||+++...|+.+...++....|++||+|||+..++..... ...+++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34567778899999999999999999999999998888877766789999999999888776554 668999999999
Q ss_pred hHHHHHhhhccCCC-CCChHHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHHhcCC------chhHHHHH
Q 004686 156 EALQLFHLKVSNGK-QPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEAP------NEKVLKVL 227 (737)
Q Consensus 156 ~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~-~~~~~~~~~~~~~~~~~------~~~~~~~~ 227 (737)
++++||.+.++... ......++.+++|+++|+|+|+|+..+|++++. .+..+|...++.+.... ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999986544 223344567899999999999999999999954 36678888887665432 46789999
Q ss_pred HhhhcCCChhhHhhhheeecccCCCC--HHHHHHhhhcCCCCch
Q 004686 228 RISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSD 269 (737)
Q Consensus 228 ~~s~~~L~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~ 269 (737)
..||+.||++.|+||.+|++||.+.. .+.++.+|.++|++..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999874 7899999999987653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-30 Score=309.30 Aligned_cols=372 Identities=20% Similarity=0.207 Sum_probs=277.5
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccc----cccCcceeeeecCCCCCCCCCCCCCCCeeEEcc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY----LSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLC 408 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~ 408 (737)
..++.+.+..+.+.......|..+++|++|++++|.+.+.+|. .+.+|++|++.++.+........+++|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 4788888888877777778899999999999999998876664 346777777777766533223356789999999
Q ss_pred CCccc-cccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccccC
Q 004686 409 NSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 486 (737)
Q Consensus 409 ~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 486 (737)
+|.+. .+|..+..+++|++|++++|.+....| .+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 99887 677788999999999999998776655 4888999999999999888888888999999999999998888888
Q ss_pred ccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc-ccCcccccCCCCcEEEccCCC--CCCCcCccchh
Q 004686 487 PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKILSSNF 563 (737)
Q Consensus 487 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~ 563 (737)
|..+..+++|++|++++|.+.+.+|..++++++|+.|++++|.+. .+|..+..+++|+.|++++|. ...|..+....
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 888999999999999999888888888999999999999999887 678888889999999998887 33343322222
Q ss_pred hhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEc
Q 004686 564 FLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILC 642 (737)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~ 642 (737)
..+......+.... .....+..+++|+.|++++|. +++.+|..++.+++|+.|++++|.++ .+|.++..+++|+.|+
T Consensus 309 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 309 NLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 22222222222221 111236678888888888888 56677888888888888888888877 6777777788888888
Q ss_pred cccCccCCCCCCC---CCccceeecc-------------cccccccccccccccCCCCceEEEecCCCccccccccchHH
Q 004686 643 LEKCRNLKSLPEL---PPEIVFVGAE-------------DCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (737)
Q Consensus 643 l~~n~~~~~~~~l---~~~L~~l~l~-------------~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 706 (737)
+++|+....+|.. .++|+.|+++ ++++|+.+++..| .+.+.++..+..+++|+.|++++|.+.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceee
Confidence 8888776665531 1345555443 3455566666555 445555556667777777777777665
Q ss_pred H
Q 004686 707 V 707 (737)
Q Consensus 707 ~ 707 (737)
+
T Consensus 466 ~ 466 (968)
T PLN00113 466 G 466 (968)
T ss_pred e
Confidence 4
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.1e-30 Score=307.21 Aligned_cols=375 Identities=21% Similarity=0.234 Sum_probs=233.9
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccccc---CcceeeeecCCCC-CCCCCC-CCCCCeeEE
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFN-SLPVSF-RPEKLFKLN 406 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~~~~~~~-~l~~~~-~~~~L~~L~ 406 (737)
...++.+.+..+.........++.+++|++|++++|.+.+..|..+. +|++|++.++.+. .+|..+ .+.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45667777777766656666777888888888888877776665544 4445555444433 234333 567888888
Q ss_pred ccCCccc-cccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccc
Q 004686 407 LCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (737)
Q Consensus 407 l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (737)
+++|.+. .+|..+..+++|++|++++|.+....| .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 8888776 567777788888888888887765555 37777888888888877777777777778888888888877777
Q ss_pred cCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc-ccCcccccCCCCcEEEccCCC--CCCCcCccc
Q 004686 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKILSS 561 (737)
Q Consensus 485 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~--~~~~~~~~~ 561 (737)
.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ...|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 77777777888888888888777777777777888888888887776 667777777888888887776 223322211
Q ss_pred hhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCE
Q 004686 562 NFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKI 640 (737)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 640 (737)
...........+..... ....+..+++|+.|++++|+ +++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 379 ~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 379 SGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred cCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 11111111111111110 11224455666666666666 44455555566666666666666555 34444445555555
Q ss_pred EccccCccCCCCCCCC--------------------------Cccceeecc-------------cccccccccccccccC
Q 004686 641 LCLEKCRNLKSLPELP--------------------------PEIVFVGAE-------------DCTSLETISAFAKLSR 681 (737)
Q Consensus 641 L~l~~n~~~~~~~~l~--------------------------~~L~~l~l~-------------~c~~L~~l~~~~~~~~ 681 (737)
|++++|.....+|... ++|+.|+++ +|++|+.|+++.| .+
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l 535 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN-QL 535 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-cc
Confidence 5555555443333211 334444332 3445555555554 44
Q ss_pred CCCceEEEecCCCccccccccchHHHHH
Q 004686 682 SPNIALNFLNCFKLVEDQVSKDNLAVTL 709 (737)
Q Consensus 682 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 709 (737)
.+.+|..+.++++|+.|++++|.+++..
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccC
Confidence 4555556666666666666666665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-27 Score=239.61 Aligned_cols=393 Identities=19% Similarity=0.122 Sum_probs=231.4
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCC--ccccccCcceeeeecCCCCCCCCCC--CCCCCeeEEc
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGN--LEYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 407 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~l 407 (737)
....+.+.++.|.+..+....|.++++|+.+.+..|.++.. +....+++..|++.+|-+..+...- ..+.|++|||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45667888888999999999999999999999988877753 2234456777777776666655432 4567788888
Q ss_pred cCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccccccc
Q 004686 408 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (737)
Q Consensus 408 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (737)
+.|.|++++.. |..-.++++|+|+.|+++..... |.++.+|-+|.++.|++.+..+..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888877743 66667788888888877766554 77777788888888776655557777788888888877654322
Q ss_pred CccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccC-cccccCCCCcEEEccCCCCCCCcC--ccch
Q 004686 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKI--LSSN 562 (737)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~ 562 (737)
--..|..+++|+.|.+..|.+..--...|..+.++++|++..|++..+. .++.+++.|+.|+++.|....-.. ..++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 1234566667777777666655444445666667777777776666443 345566677777776665211100 0000
Q ss_pred hhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc----ccchhhhcCCCC
Q 004686 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF----SLPSSINQLLKL 638 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~----~lp~~l~~l~~L 638 (737)
+-+....+..|.... ..-.++..+..|++|+|++|.+ +..-...|..+++|+.|||.+|.++ .-...+..+++|
T Consensus 317 qkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 317 QKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred ccceeEecccccccc-CChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 000000001111000 1112233444445555554442 1111122334455555555555444 111234445555
Q ss_pred CEEccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHHHHHHhh
Q 004686 639 KILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLVYC 718 (737)
Q Consensus 639 ~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~c 718 (737)
+.|.|.+|+ ++.+|. =.++++++|+.|++.+| .+...-+-.|..+ .|++|-+..-.|-+++...|+..+.
T Consensus 395 rkL~l~gNq-lk~I~k-------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 395 RKLRLTGNQ-LKSIPK-------RAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hheeecCce-eeecch-------hhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 555555554 222221 12456777777777666 3333335566666 7777777666677778888877766
Q ss_pred hh--ccCcCceeEeeecccc
Q 004686 719 KI--NYSFQWVVFAHLIHIL 736 (737)
Q Consensus 719 ~~--~~~~~~~~~~~~~~~~ 736 (737)
.. .+.....+.+|.++++
T Consensus 465 ~~~~lq~sv~a~CayPe~La 484 (873)
T KOG4194|consen 465 YRRKLQSSVIAKCAYPEPLA 484 (873)
T ss_pred HhcccccceeeeccCCcccc
Confidence 53 3566666777776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.9e-27 Score=235.83 Aligned_cols=332 Identities=19% Similarity=0.247 Sum_probs=258.5
Q ss_pred eEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc--ccccCcceeeeecCCCC--CCCCC-CCCCCCeeEEcc
Q 004686 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFN--SLPVS-FRPEKLFKLNLC 408 (737)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~~~~~~~--~l~~~-~~~~~L~~L~l~ 408 (737)
.++=+.+....+..++ +.++.+.+|+.|.++.|++..... ..++.|+++.+.+++++ .+|.+ +.+..|++|+|+
T Consensus 33 ~~~WLkLnrt~L~~vP-eEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVP-EELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred heeEEEechhhhhhCh-HHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 4445555554444444 466777788888888777665332 34566777777666654 35655 478899999999
Q ss_pred CCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCc
Q 004686 409 NSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFP 487 (737)
Q Consensus 409 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 487 (737)
+|.+++.|..+..-+++-+|+||+|++.+.+.. +-++..|-+||+++|. ...+|..+.++.+|++|++++|++...--
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 999999999988889999999999988877665 6678888999999876 45677788999999999999988754322
Q ss_pred cccCCCCCccEEEccCCCC-CcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhc
Q 004686 488 KNVCLMKSLKILCLCGCLK-LEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLS 566 (737)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 566 (737)
..+..+++|+.|.+++..- ...+|..+..+.||+.++++.|.+..+|+.+..+.+|+.|++++|....-
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL---------- 260 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL---------- 260 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee----------
Confidence 3355677888888887543 34778889999999999999999999999999999999999998872110
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc--ccchhhhcCCCCCEEccc
Q 004686 567 LLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLE 644 (737)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~ 644 (737)
-...+...+|++|+++.|++.. +|..+..++.|+.|-+.+|+++ .+|++++++.+|+++..+
T Consensus 261 --------------~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 261 --------------NMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred --------------eccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 0113346789999999999755 9999999999999999999877 899999999999999999
Q ss_pred cCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccch
Q 004686 645 KCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (737)
Q Consensus 645 ~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 704 (737)
+|. ++-+|+ .+..|++|+.|.+..|..+ ..|..+.-++.|..||+..|.
T Consensus 325 nN~-LElVPE--------glcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 325 NNK-LELVPE--------GLCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccc-cccCch--------hhhhhHHHHHhccccccee--echhhhhhcCCcceeeccCCc
Confidence 886 566666 6789999999988887433 357788889999999998774
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=7.2e-27 Score=235.20 Aligned_cols=314 Identities=19% Similarity=0.280 Sum_probs=241.9
Q ss_pred CCceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCC-Cccc-c--ccCcceeeeecCCCCCCCCCC-CCCCCeeE
Q 004686 331 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSG-NLEY-L--SNNLRYLKWHEYPFNSLPVSF-RPEKLFKL 405 (737)
Q Consensus 331 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~--~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L 405 (737)
....++++.+..|.+..+. ..++.++.||.+++..|.+.. .+|. . +..|..|+++.+.+...|... ..+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3445666777766655544 357788888888888887764 2332 2 346777777777777788776 66788899
Q ss_pred EccCCcccccccc-ccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecccccccc-
Q 004686 406 NLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL- 483 (737)
Q Consensus 406 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~- 483 (737)
+|++|+|..+|.. |.++..|-+||||+|+....+|....+.+|++|.+++|.+.-.--..+-.|.+|+.|.+++...+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9999999988876 67888899999999988888888888888999999988765443355667778888888876553
Q ss_pred ccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC-CCCCcCccch
Q 004686 484 VSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSN 562 (737)
Q Consensus 484 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 562 (737)
..+|..+..+.+|..++++.|++ ...|+.+.++++|+.|++++|.++.+....+...+|+.|+++.|. ...|
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP------ 284 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP------ 284 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch------
Confidence 46788888888999999988765 467888888899999999999999888778888889999998887 3333
Q ss_pred hhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEc
Q 004686 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILC 642 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~ 642 (737)
..+..++.|+.|.+.+|++.-..+|+.++.+..|+.+..++|.+.-+|.+++.|++|+.|.
T Consensus 285 -------------------~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 285 -------------------DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred -------------------HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence 2256778888888888887667788889999999999999998888898999999999999
Q ss_pred cccCccCCCCCC---CCCccceeeccccccccc
Q 004686 643 LEKCRNLKSLPE---LPPEIVFVGAEDCTSLET 672 (737)
Q Consensus 643 l~~n~~~~~~~~---l~~~L~~l~l~~c~~L~~ 672 (737)
|++|++.+ +|. +-+.|+.|+++.-|+|-.
T Consensus 346 L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 346 LDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccccceee-chhhhhhcCCcceeeccCCcCccC
Confidence 99888655 343 235666666666666554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.6e-25 Score=222.58 Aligned_cols=363 Identities=17% Similarity=0.101 Sum_probs=250.1
Q ss_pred EEEEecCCcccccChhhhhcC--CCCceEEEcccccCCCccc---cccCcceeeeecCCCCCCCCCC-CCCCCeeEEccC
Q 004686 336 EAIIVDVPEMTELEAKSFSTM--SNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCN 409 (737)
Q Consensus 336 ~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~ 409 (737)
+.+..+..++..++...+.++ +.-+.|++++|.+...-+. .+++|+.+.+..|.++.+|... ...+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 445555555555555555544 3456699999999886554 4567777778888888999877 456799999999
Q ss_pred Cccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCc
Q 004686 410 SRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFP 487 (737)
Q Consensus 410 ~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 487 (737)
|.|+++.. .++-++.||.|||+.|.+..... .|..-.++++|++++|.+.+.-...|..+.+|..|.++.|+++.--+
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 99998864 48889999999999998776654 47777889999999998877666889999999999999988776666
Q ss_pred cccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCCCCCCCcCccchhhhc
Q 004686 488 KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLS 566 (737)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 566 (737)
..|..+++|+.|+|..|.+.-.--..|.++++|+.|.+..|.+..+-+. +..|.+++.|++..|............+..
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 7788899999999999887543344688999999999999999988664 566999999999998833222111111111
Q ss_pred c--cCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEcc
Q 004686 567 L--LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 643 (737)
Q Consensus 567 ~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l 643 (737)
+ .....|... ......+..+++|++|+|+.|. ++.--+..+..+..|++|+|++|.+..+.. .|..+++|++|+|
T Consensus 295 L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 295 LEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhccchhhhh-eeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 1 111111111 1223345555666666666666 332333445555666666666666654443 3566666666666
Q ss_pred ccCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHH
Q 004686 644 EKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (737)
Q Consensus 644 ~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 706 (737)
++|.+.-.+-.. .--+.++++|+.|.+-+| .+-....-.|++++.|++|||++|-+.
T Consensus 373 r~N~ls~~IEDa-----a~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 373 RSNELSWCIEDA-----AVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred cCCeEEEEEecc-----hhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcce
Confidence 666654322110 002346788888888776 332223447899999999999998764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.6e-25 Score=212.02 Aligned_cols=346 Identities=23% Similarity=0.274 Sum_probs=194.2
Q ss_pred cCCCCceEEEcccccCCCccccc--cCcceeeeecCCCCCCCCCC-CCCCCeeEEccCCccccccccccCCCCCcEEecC
Q 004686 355 TMSNLRLLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLS 431 (737)
Q Consensus 355 ~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 431 (737)
...+|+.++++.|.+....+... ..+..|+-.++.+..+|.++ .+.++..+++.+|.+..+|...-.++.|++|+..
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence 33444444444444443333221 12333444444444444443 4445555555555555555554445556666665
Q ss_pred CCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccC-CCCCccEEEccCCCCCccc
Q 004686 432 HSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC-LMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~ 510 (737)
.|...+.++.++++.+|+.|++..|.+ ..+| .|..|..|+.|.++.|. ++-+|.+.. ++++|..||+++|.+ ...
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNkl-ke~ 267 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKL-KEV 267 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccc-ccC
Confidence 555555555555666666666665442 3444 55666666666666543 344454443 667777777777554 456
Q ss_pred CcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCC--cCccc--hhhhccc---CCC---CCCCCcc--
Q 004686 511 PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPP--KILSS--NFFLSLL---LPN---KNSDSMC-- 578 (737)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~~~---~~~---~~~~~~~-- 578 (737)
|..+..+.+|+.|++++|.++.+|..++++ .|+.|-+.||....- ..+.. .....+. +.. +....+.
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 666667777777777777777777777777 777777777661100 00000 0111110 000 0000000
Q ss_pred ------ccCCCCCCCCCC--------------------------cEEeccCCCCCC----------------------CC
Q 004686 579 ------LSFPRFTGLSSL--------------------------QTLDLSDCNLLE----------------------GA 604 (737)
Q Consensus 579 ------~~~~~~~~~~~L--------------------------~~L~l~~~~~~~----------------------~~ 604 (737)
..++......+. ...+++.|++.+ +-
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc
Confidence 000111111223 334444444211 12
Q ss_pred ccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCC-------------Cccceee---ccccc
Q 004686 605 IPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP-------------PEIVFVG---AEDCT 668 (737)
Q Consensus 605 ~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~-------------~~L~~l~---l~~c~ 668 (737)
+|..++.+++|..|++++|.+..+|..++++..|+.|++++|++ ..+|..- -.++.++ +.++.
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 34445677899999999999999999999999999999999963 2233100 1222222 45788
Q ss_pred ccccccccccccCCCCceEEEecCCCccccccccchHHHH
Q 004686 669 SLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVT 708 (737)
Q Consensus 669 ~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 708 (737)
+|+++++.+| ....+|..+++|.+|++|++.+|.|..-
T Consensus 506 nL~tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 506 NLTTLDLQNN--DLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hcceeccCCC--chhhCChhhccccceeEEEecCCccCCC
Confidence 8999988876 3445799999999999999999999743
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.4e-19 Score=212.70 Aligned_cols=311 Identities=26% Similarity=0.389 Sum_probs=217.2
Q ss_pred hhhcC-CCCceEEEcccccCCCccc-cccCcceeeeecCCCCCCCCCC-CCCCCeeEEccCCc-cccccccccCCCCCcE
Q 004686 352 SFSTM-SNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSR-IKYLWKGIKPLKELKF 427 (737)
Q Consensus 352 ~~~~~-~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~ 427 (737)
.|..+ .+|+.|.+.++.+...... .+.+|+.|++.++.+..++..+ .+.+|++|+++++. +..+|. +..+++|+.
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 34444 4688888888766543322 2467888888888888887665 67889999998764 566664 777889999
Q ss_pred EecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCC
Q 004686 428 MNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLK 506 (737)
Q Consensus 428 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (737)
|++++|......| .+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 9998887665555 47788889999998888777887655 7888888888888766666642 45677888877764
Q ss_pred CcccCcccCCCC-------------------------------cccEEEccCcc-CcccCcccccCCCCcEEEccCCCCC
Q 004686 507 LEKLPQDLGEVE-------------------------------CLEELDVGGTA-IRQIPPSIVQLVNLKIFSLHGCKGQ 554 (737)
Q Consensus 507 ~~~~~~~l~~l~-------------------------------~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~ 554 (737)
..+|..+ .++ +|+.|++++|. +..+|..++++++|+.|++++|..
T Consensus 738 -~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~- 814 (1153)
T PLN03210 738 -EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN- 814 (1153)
T ss_pred -ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC-
Confidence 3444432 233 45555555543 234555555555566665555431
Q ss_pred CCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhc
Q 004686 555 PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 634 (737)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~ 634 (737)
...++...++++|+.|++++|..+. .+|. ..++|+.|++++|.++.+|.++..
T Consensus 815 -----------------------L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 815 -----------------------LETLPTGINLESLESLDLSGCSRLR-TFPD---ISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred -----------------------cCeeCCCCCccccCEEECCCCCccc-cccc---cccccCEeECCCCCCccChHHHhc
Confidence 1122333368899999999987443 3443 246899999999999999999999
Q ss_pred CCCCCEEccccCccCCCCCCCC---Cccceeeccccccccccccccccc------------CCCCceEEEecCCCccc
Q 004686 635 LLKLKILCLEKCRNLKSLPELP---PEIVFVGAEDCTSLETISAFAKLS------------RSPNIALNFLNCFKLVE 697 (737)
Q Consensus 635 l~~L~~L~l~~n~~~~~~~~l~---~~L~~l~l~~c~~L~~l~~~~~~~------------~~~~~~~~~~~~~~L~~ 697 (737)
+++|+.|++++|+.++.+|... ++|+.+++++|++|+.+.+..... .....+..+.+|.+|..
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 9999999999999999887543 678888999999999876543211 11123456778877753
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=2.9e-22 Score=211.86 Aligned_cols=122 Identities=21% Similarity=0.167 Sum_probs=89.1
Q ss_pred EEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc--ccccCcceeeeecCCCCCCCCCC-CCCCCeeEEccCCc
Q 004686 335 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSR 411 (737)
Q Consensus 335 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~ 411 (737)
+..+.+..|.....+.....+.-.|++|++++|.+....- ..+.+|+.|.++++.+...|..+ .+.+|++|+|.+|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch
Confidence 3444444444444444555556669999999998765322 34457788888888888888655 78999999999999
Q ss_pred cccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCc
Q 004686 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (737)
Q Consensus 412 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (737)
+..+|.++..+++|++|+++.|.+...+..+..+..++.+..++|
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 999999999999999999999988877665555555555555544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.2e-21 Score=187.94 Aligned_cols=240 Identities=30% Similarity=0.314 Sum_probs=167.9
Q ss_pred CcceeeeecCCCCCCCCCC-CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcc
Q 004686 379 NLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (737)
.+..|.+.++....+|..+ ....++.++.++|.+.++|..+..+.+|+.+++++|.....+++++.+..|+.|+..+|+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence 3444444444444444443 455667777777777777777777777777777777777777777777777777777755
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccc
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSI 537 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 537 (737)
+ ...|..+.++.+|..+++.+|......|. .-.|+.|++|+...|. .+.+|..++.+.+|+-|++..|++..+| .+
T Consensus 149 i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef 224 (565)
T KOG0472|consen 149 I-SSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP-EF 224 (565)
T ss_pred c-ccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC-CC
Confidence 3 45566777777777777777654433333 3347777777777644 4567777777777777777777777777 57
Q ss_pred ccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCe
Q 004686 538 VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 617 (737)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 617 (737)
..|..|+.|.++.|....- ......++++|..|++.+|++.+ .|+.+..+.+|++
T Consensus 225 ~gcs~L~Elh~g~N~i~~l-----------------------pae~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~r 279 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEML-----------------------PAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLER 279 (565)
T ss_pred CccHHHHHHHhcccHHHhh-----------------------HHHHhcccccceeeecccccccc--CchHHHHhhhhhh
Confidence 7777777777776652111 11224567788888888888655 8888888888888
Q ss_pred EeCCCCCCcccchhhhcCCCCCEEccccCcc
Q 004686 618 IDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (737)
Q Consensus 618 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 648 (737)
||+|+|.++.+|.+++++ +|+.|-+.||+.
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCch
Confidence 888888888888888888 888888888875
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=6.4e-18 Score=185.40 Aligned_cols=171 Identities=18% Similarity=0.100 Sum_probs=87.3
Q ss_pred CceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCC
Q 004686 359 LRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR 438 (737)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~ 438 (737)
-..|+++++.++...+....+++.|.+.++.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+...
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhh
Confidence 34556666655533333334555555555555555542 35666666666666666542 24566666666654432
Q ss_pred CCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCC
Q 004686 439 TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE 518 (737)
Q Consensus 439 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 518 (737)
+. ...+|+.|++++|.+. .+|. ..++|+.|++++|.+. .+|. ...+|+.|++++|.+. .+|.. ..
T Consensus 278 p~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~---lp~~L~~L~Ls~N~L~-~LP~l---p~ 342 (788)
T PRK15387 278 PA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLPTL---PS 342 (788)
T ss_pred hh---chhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC---CcccccccccccCccc-ccccc---cc
Confidence 22 1234566666665433 3332 2345666666665433 2333 1234555666665543 23321 23
Q ss_pred cccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 519 CLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 519 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
+|+.|++++|.++.+|.. ..+|+.|++++|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 343 GLQELSVSDNQLASLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred ccceEecCCCccCCCCCC---Ccccceehhhccc
Confidence 566666666666665542 2345555555443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.3e-17 Score=181.05 Aligned_cols=259 Identities=20% Similarity=0.146 Sum_probs=199.5
Q ss_pred EEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccc
Q 004686 336 EAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL 415 (737)
Q Consensus 336 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l 415 (737)
..+.+..+.+..++.. +. ++|+.|.+++|.++. +|..+++|++|++.+|.++.+|.. +++|+.|++++|.+..+
T Consensus 204 ~~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 204 AVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHL 277 (788)
T ss_pred cEEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhh
Confidence 3566766666665543 32 479999999999886 566788999999999999999864 56999999999999988
Q ss_pred cccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCC
Q 004686 416 WKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKS 495 (737)
Q Consensus 416 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 495 (737)
|... .+|+.|++++|.+...+. ..++|++|++++|.+.. +|.. ..+|+.|++++|.+. .+|. ...+
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~ 343 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSG 343 (788)
T ss_pred hhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccc
Confidence 8643 678899999998775543 24789999999987653 4432 245888899998754 4664 2358
Q ss_pred ccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCC
Q 004686 496 LKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSD 575 (737)
Q Consensus 496 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (737)
|+.|++++|.+.+ +|.. ..+|+.|++++|.++.+|.. +.+|+.|++++|....
T Consensus 344 Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-------------------- 396 (788)
T PRK15387 344 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-------------------- 396 (788)
T ss_pred cceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC--------------------
Confidence 9999999988764 5643 35788999999999988864 4679999999886211
Q ss_pred CccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCC
Q 004686 576 SMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (737)
Q Consensus 576 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 653 (737)
++. ..++|+.|++++|.+.. +|.. +.+|+.|++++|+++.+|..+.++++|+.|+|++|++....+
T Consensus 397 -----LP~--l~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 397 -----LPV--LPSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -----CCC--cccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 111 13579999999999643 6753 357899999999999999999999999999999999765543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.5e-17 Score=183.85 Aligned_cols=244 Identities=18% Similarity=0.212 Sum_probs=147.4
Q ss_pred CceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCC
Q 004686 359 LRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR 438 (737)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~ 438 (737)
...|+++++.++.........++.|++.+|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+...
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL 256 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC
Confidence 3455555555544333334456666666666666665443 467777777777666665443 3567777777665544
Q ss_pred CCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCC
Q 004686 439 TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE 518 (737)
Q Consensus 439 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 518 (737)
+..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|..+ .+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~ 325 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTA-LPETL--PP 325 (754)
T ss_pred ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcccc-CCccc--cc
Confidence 33332 35677777765543 4454332 46777777776543 344433 2457777777766553 44332 25
Q ss_pred cccEEEccCccCcccCcccccCCCCcEEEccCCCCC-CCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccC
Q 004686 519 CLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ-PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSD 597 (737)
Q Consensus 519 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 597 (737)
+|+.|++++|.++.+|..+ +++|+.|++++|... +| . .-.++|+.|++++
T Consensus 326 sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP--------------------------~-~lp~~L~~LdLs~ 376 (754)
T PRK15370 326 GLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLP--------------------------E-TLPPTITTLDVSR 376 (754)
T ss_pred cceeccccCCccccCChhh--cCcccEEECCCCCCCcCC--------------------------h-hhcCCcCEEECCC
Confidence 6777778777777777654 367788887776521 11 0 0124688888888
Q ss_pred CCCCCCCccccccCCCCCCeEeCCCCCCcccchhh----hcCCCCCEEccccCccC
Q 004686 598 CNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI----NQLLKLKILCLEKCRNL 649 (737)
Q Consensus 598 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l----~~l~~L~~L~l~~n~~~ 649 (737)
|.+.. +|..+. .+|+.|++++|+++.+|..+ ..++++..|++.+|+..
T Consensus 377 N~Lt~--LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 377 NALTN--LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCCC--CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88543 666554 36888888888888776544 34577888888888743
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.3e-17 Score=181.19 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=150.8
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcc
Q 004686 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (737)
.+...|.+.++.++.+|..++ ++|+.|++++|.++.+|..+. .+|+.|++++|.+...+..+ .++|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCc
Confidence 356778888888999988764 589999999999999887654 58999999988776544333 2468888888877
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccc
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSI 537 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 537 (737)
+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|.++.+|..+
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL 323 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc
Confidence 54 5565443 47888888877654 5665443 478888888876653 454332 46778888888887776543
Q ss_pred ccCCCCcEEEccCCCC-CCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCC
Q 004686 538 VQLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (737)
Q Consensus 538 ~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 616 (737)
.++|+.|++++|.. .+| ..+ +++|+.|++++|++.. +|..+. ++|+
T Consensus 324 --~~sL~~L~Ls~N~Lt~LP-------------------------~~l--~~sL~~L~Ls~N~L~~--LP~~lp--~~L~ 370 (754)
T PRK15370 324 --PPGLKTLEAGENALTSLP-------------------------ASL--PPELQVLDVSKNQITV--LPETLP--PTIT 370 (754)
T ss_pred --cccceeccccCCccccCC-------------------------hhh--cCcccEEECCCCCCCc--CChhhc--CCcC
Confidence 35777777776651 111 001 2567777777777432 555442 5677
Q ss_pred eEeCCCCCCcccchhhhcCCCCCEEccccCcc
Q 004686 617 AIDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (737)
Q Consensus 617 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 648 (737)
.|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 371 ~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 371 TLDVSRNALTNLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred EEECCCCcCCCCCHhHH--HHHHHHhhccCCc
Confidence 77777777777776553 2577777777764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-18 Score=185.00 Aligned_cols=269 Identities=23% Similarity=0.293 Sum_probs=158.6
Q ss_pred hhhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEe
Q 004686 350 AKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMN 429 (737)
Q Consensus 350 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 429 (737)
...+..+.+|++|..+.|.+.. +...-.+++.|...++++..+-..+.+.+|++++++++.++.+|..+..|.+|+.+.
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~-l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSE-LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN 270 (1081)
T ss_pred hhhhhhccchhhhhhhhcccce-EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec
Confidence 3345566666666666665542 223334666677777766655555566677777777777777776677777777777
Q ss_pred cCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCcccc-CCCC-CccEEEccCCCCC
Q 004686 430 LSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV-CLMK-SLKILCLCGCLKL 507 (737)
Q Consensus 430 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~-~L~~L~l~~~~~~ 507 (737)
..+|.+...+..+....+|+.|++.+|.. ..+|.....++.|++|++..|. +..+|..+ .... +|..|+.+.|...
T Consensus 271 ~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcccc
Confidence 77777655444566666777777777553 3455556667777777777754 33444322 1111 1444444443332
Q ss_pred cccCc-ccCCCCcccEEEccCccCc-ccCcccccCCCCcEEEccCCC-CCCCcCccchhhhcccCCCCCCCCccccCCCC
Q 004686 508 EKLPQ-DLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRF 584 (737)
Q Consensus 508 ~~~~~-~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
..|. .=...+.|+.|.+.+|.++ ..-+.+-+..+|+.|++++|. ...|. ..+
T Consensus 349 -~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa------------------------s~~ 403 (1081)
T KOG0618|consen 349 -TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA------------------------SKL 403 (1081)
T ss_pred -ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH------------------------HHH
Confidence 2221 1112445666666666666 333345556666666666665 22221 224
Q ss_pred CCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccC
Q 004686 585 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 585 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
.++..|++|++++|++.+ +|..+.+++.|++|...+|.+..+| .+..++.|+.+|++.|.+.
T Consensus 404 ~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 556666666777766544 6666666666666666666666666 5666666666666666644
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1e-17 Score=161.19 Aligned_cols=325 Identities=16% Similarity=0.174 Sum_probs=192.9
Q ss_pred eeeecCCCCCCCCCCCCCCCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccc
Q 004686 383 LKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLL 460 (737)
Q Consensus 383 L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 460 (737)
.+..+-+++.+|...+. .-..++|..|.|+.+|+. |+.+++||.|||++|.+..+.|+ |.+++.|..|-+.+++.++
T Consensus 51 VdCr~~GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34455567777877654 567888999999999865 89999999999999988888775 8888888888887756666
Q ss_pred ccc-ccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc---ccCcc
Q 004686 461 EVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR---QIPPS 536 (737)
Q Consensus 461 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~l~~~ 536 (737)
.+| ..|..+..|+.|.+.-|...-.....+..+++|..|.+.+|.+...-...+..+..++.+.+.-|.+. .+| +
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~-w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP-W 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc-h
Confidence 666 67888999999988887765555667788888888888887665433446777888888877666532 111 1
Q ss_pred cccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCcc-ccccCCCCC
Q 004686 537 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSL 615 (737)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L 615 (737)
....-.-.....++-....|..+....+.+..-... ......+.+--.+.+. ..+..| ..|+.+++|
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-----------~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF-----------LCSLESLPSRLSSEDF-PDSICPAKCFKKLPNL 276 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhh-----------hhhHHhHHHhhccccC-cCCcChHHHHhhcccc
Confidence 111000011111221122221111111110000000 0000011111111121 111222 345566666
Q ss_pred CeEeCCCCCCccc-chhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCC
Q 004686 616 EAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFK 694 (737)
Q Consensus 616 ~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~ 694 (737)
++|+|++|+++.+ +.+|.....+++|.|..|++-. +. .=-+.++..|++|++..| .++...|..|....+
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~-------~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VS-------SGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFS 347 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HH-------HHhhhccccceeeeecCC-eeEEEecccccccce
Confidence 6666666666633 3355666666666666665321 10 002345555566655555 455555778888889
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhccCcCceeEe
Q 004686 695 LVEDQVSKDNLAVTLMKQWLLVYCKINYSFQWVVFA 730 (737)
Q Consensus 695 L~~L~l~~n~~~~~~~~~~~~~~c~~~~~~~~~~~~ 730 (737)
|.+|++-.|.+-+++...|+..+-.+......+..+
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 999999999999998888888776665555444443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-17 Score=141.99 Aligned_cols=161 Identities=25% Similarity=0.365 Sum_probs=117.8
Q ss_pred CCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCc
Q 004686 390 FNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTL 469 (737)
Q Consensus 390 ~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 469 (737)
+.++++.+.+++++.|-+++|.++.+|+.+..+.+|+.|++++|++...++.++++++|+.|+++-|. ...+|..|+.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCC
Confidence 34556666777777777777777777777777777777777777777777777777777777777644 44667777777
Q ss_pred cccceeccccccccc-cCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEc
Q 004686 470 KRLILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSL 548 (737)
Q Consensus 470 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 548 (737)
|.|+.||+++|++.. .+|..+..+..|+.|.+++|.+ ..+|..++++++|+.|.+..|.+-.+|..++.++.|+.|.+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 777777777776643 5677777777777777777665 45677777777777777777777777777777777777777
Q ss_pred cCCC
Q 004686 549 HGCK 552 (737)
Q Consensus 549 ~~~~ 552 (737)
.+|.
T Consensus 181 qgnr 184 (264)
T KOG0617|consen 181 QGNR 184 (264)
T ss_pred ccce
Confidence 7776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=8.1e-17 Score=136.86 Aligned_cols=162 Identities=26% Similarity=0.346 Sum_probs=142.0
Q ss_pred cCcceeeeecCCCCCCCCCC-CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCc
Q 004686 378 NNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (737)
++...|.++++.++.+|..+ .+.+|+.|++.+|.|+++|..++.+++|+.|+++-|+....+..|+++|.|+.||+.+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 45556666667777666555 67899999999999999999999999999999999998888888999999999999998
Q ss_pred ccc-ccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc
Q 004686 457 TRL-LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP 535 (737)
Q Consensus 457 ~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 535 (737)
++. ..+|..|-.|.-|+.|.++.|.+ ..+|+.++++++|+.|.+..|.+. .+|..++.+..|++|.+.+|+++.+|+
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 865 56888888999999999999764 578888999999999999998876 589999999999999999999999999
Q ss_pred ccccCC
Q 004686 536 SIVQLV 541 (737)
Q Consensus 536 ~~~~l~ 541 (737)
.++++.
T Consensus 191 el~~l~ 196 (264)
T KOG0617|consen 191 ELANLD 196 (264)
T ss_pred hhhhhh
Confidence 877643
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=2.8e-13 Score=160.49 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=181.3
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc--
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-- 79 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-- 79 (737)
.+|.+.+... ...++++|+||+|.||||++..++.+. +.++|+... ....++..+...++..+.......
T Consensus 20 ~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~---~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 20 ERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLD---ESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred hHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecC---cccCCHHHHHHHHHHHHHHhcCcccc
Confidence 3566666643 467899999999999999999988642 268898732 123445555566666653221110
Q ss_pred ----------ccchhhhHHHHHHHhc--CCeEEEEEcCCCChHH--HH-HHhcCCCCCCCCcEEEEEeCCchhhh--hc-
Q 004686 80 ----------IWDVHKGINLIRWRLC--RKRVLVILDDVDQLEQ--LQ-ALVGNHDWFGFGSRIIITSRDEHVLK--SH- 141 (737)
Q Consensus 80 ----------~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~~--~~-~l~~~l~~~~~~~~iliTtR~~~~~~--~~- 141 (737)
..+.......+...+. +.+++|||||+...++ .. .+...+...+.+.++|+|||...-.. ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~ 171 (903)
T PRK04841 92 KSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLR 171 (903)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHH
Confidence 0112223333333333 6789999999976532 22 22222223356778889999742111 11
Q ss_pred CcccEEEcC----CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004686 142 GVTNTYKVR----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQE 217 (737)
Q Consensus 142 ~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~ 217 (737)
......++. +|+.+|+.++|....... ...+..++|++.|+|+|+++..++..+..... ........+..
T Consensus 172 ~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~-~~~~~~~~~~~ 245 (903)
T PRK04841 172 VRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNS-SLHDSARRLAG 245 (903)
T ss_pred hcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-chhhhhHhhcC
Confidence 112245555 999999999998765322 23366788999999999999988877654221 01111122222
Q ss_pred CCchhHHHH-HHhhhcCCChhhHhhhheeecccCCCCHHHHHHhhhcCCCCchhhHHHHhhcccceee----cCEEeHhH
Q 004686 218 APNEKVLKV-LRISYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV----NNKLWMHD 292 (737)
Q Consensus 218 ~~~~~~~~~-~~~s~~~L~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~l~~~~----~~~~~~h~ 292 (737)
.....+... ....+..||+..++++...++++ .++.+....+.... .....++++.+.+++... ..+|++|+
T Consensus 246 ~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~ 322 (903)
T PRK04841 246 INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHP 322 (903)
T ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhH
Confidence 223345554 34458999999999999999987 56665555554321 236679999999997643 23799999
Q ss_pred HHHHHHHHHHhhh
Q 004686 293 LLQEMGWEIVREH 305 (737)
Q Consensus 293 l~~~~~~~~~~~~ 305 (737)
+++++.+......
T Consensus 323 L~r~~l~~~l~~~ 335 (903)
T PRK04841 323 LFASFLRHRCQWE 335 (903)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998877443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.8e-16 Score=152.69 Aligned_cols=221 Identities=17% Similarity=0.141 Sum_probs=145.3
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccCcceee----eecCCCCCCCCCC--CCCCCeeE
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLK----WHEYPFNSLPVSF--RPEKLFKL 405 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~~~~~~~~l~~~~--~~~~L~~L 405 (737)
......|.++.|.+..++..+|+.+++||+|+++.|.|+...|..+..+..|. +.++.++++|.+. .+..++.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 34678899999999999999999999999999999999999998887665443 3447788888765 57788888
Q ss_pred EccCCcccccc-ccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccc------------cccccccCccc
Q 004686 406 NLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLL------------EVHQSVGTLKR 471 (737)
Q Consensus 406 ~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~l~~ 471 (737)
.+.-|.+..++ +.|..+++|..|.+.+|.+..... .+..+..++.+.+..|.+.- ..|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 88888888665 458888999999998887766554 37777778888777665211 11111111111
Q ss_pred cceeccc-------------------------cccccccCc-cccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEc
Q 004686 472 LILLNLK-------------------------DCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDV 525 (737)
Q Consensus 472 L~~L~l~-------------------------~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 525 (737)
..-..+. .|......| ..|+.+++|++|++++|.+...-+..|.++..+++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111111 111111111 23455666666666666666555566666666666666
Q ss_pred cCccCcccCc-ccccCCCCcEEEccCCC
Q 004686 526 GGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 526 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 552 (737)
..|++..+.. .+.++..|+.|++.+|.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCe
Confidence 6666664432 34456666666666665
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.1e-15 Score=155.82 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=9.6
Q ss_pred CCCccccccccchHHHHH
Q 004686 692 CFKLVEDQVSKDNLAVTL 709 (737)
Q Consensus 692 ~~~L~~L~l~~n~~~~~~ 709 (737)
+++|+++++++|.++...
T Consensus 277 ~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 277 KESLLELDLRGNKFGEEG 294 (319)
T ss_pred CCCccEEECCCCCCcHHH
Confidence 345555555555555443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=4e-14 Score=146.25 Aligned_cols=263 Identities=19% Similarity=0.151 Sum_probs=138.7
Q ss_pred hhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCC-CCCCCeeEEccCCccc-------cccccccCC
Q 004686 351 KSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIK-------YLWKGIKPL 422 (737)
Q Consensus 351 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~l~~~~i~-------~l~~~~~~l 422 (737)
..+..+.+|++|+++++.++...... ++... ..+++++++++++.+. .++..+..+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~----------------i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKA----------------LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHH----------------HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 34566667788888777664321100 00000 1223555555554443 223445667
Q ss_pred CCCcEEecCCCcCCCCCCC-CCCC---CCCcEEeccCccccc----cccccccCc-cccceeccccccccc----cCccc
Q 004686 423 KELKFMNLSHSCNLIRTPD-FTGV---PNLERLNLEGCTRLL----EVHQSVGTL-KRLILLNLKDCRNLV----SFPKN 489 (737)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~-~~~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~----~~~~~ 489 (737)
++|+.|++++|.+....+. +..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.+.+ .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 7888888887766543321 2222 447888887776542 122334455 677777777776552 23334
Q ss_pred cCCCCCccEEEccCCCCCcc----cCcccCCCCcccEEEccCccCc-----ccCcccccCCCCcEEEccCCCCCCCcCcc
Q 004686 490 VCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILS 560 (737)
Q Consensus 490 ~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 560 (737)
+..+++|++|++++|.+.+. ++..+...++|++|++++|.++ .++..+..+++|++|++++|.......
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~-- 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA-- 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH--
Confidence 55566777777777766531 2233444567777777777665 233344556677777776664111000
Q ss_pred chhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCC---CCccccccCCCCCCeEeCCCCCCccc-----chhh
Q 004686 561 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLE---GAIPSDIGSLFSLEAIDLSGNNFFSL-----PSSI 632 (737)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~n~l~~l-----p~~l 632 (737)
..+. ..+ ..+.+.|++|++++|.+.. ..+...+..+++|+.+++++|.++.- ...+
T Consensus 239 -~~l~-------------~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 239 -AALA-------------SAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred -HHHH-------------HHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 0000 000 0123567777777776321 11233444556677777777766622 2233
Q ss_pred hcC-CCCCEEccccCc
Q 004686 633 NQL-LKLKILCLEKCR 647 (737)
Q Consensus 633 ~~l-~~L~~L~l~~n~ 647 (737)
... +.|++|++.+|+
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 444 566666666654
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=1.5e-11 Score=131.36 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=188.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc-
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW- 81 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~- 81 (737)
++...|..+ .+.|.+.|..|+|.||||++.+++.. ...-..+.|+.. .....++..++..++..+....+....
T Consensus 26 rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlsl---de~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 26 RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSL---DESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeec---CCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 344445443 57899999999999999999999983 334456888873 233456777788887777644332221
Q ss_pred -----------chhhhHHHHHHHhc--CCeEEEEEcCCCChHH---HHHHhcCCCCCCCCcEEEEEeCCchhhhhc---C
Q 004686 82 -----------DVHKGINLIRWRLC--RKRVLVILDDVDQLEQ---LQALVGNHDWFGFGSRIIITSRDEHVLKSH---G 142 (737)
Q Consensus 82 -----------~~~~~~~~l~~~l~--~~~~LlilDd~~~~~~---~~~l~~~l~~~~~~~~iliTtR~~~~~~~~---~ 142 (737)
+.......+...+. .++..+|+||..-..+ -..+...+...+++-..|+|||++.-.... -
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 22233344444443 3689999999744432 223333333446888999999987432211 1
Q ss_pred cccEEEcC----CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcC
Q 004686 143 VTNTYKVR----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEA 218 (737)
Q Consensus 143 ~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~ 218 (737)
.+...+++ .|+.+|+.++|..... .+.+...++.+++...|++-++..++=.+++.+..+ ..+..+...
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~--q~~~~LsG~ 253 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAE--QSLRGLSGA 253 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH--HHhhhccch
Confidence 12234444 6899999999997662 233446688899999999999999988887432222 122222222
Q ss_pred CchhHHHHHHhhhcCCChhhHhhhheeecccCCCCHHHHHHhhhcCCCCchhhHHHHhhcccceee----cCEEeHhHHH
Q 004686 219 PNEKVLKVLRISYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV----NNKLWMHDLL 294 (737)
Q Consensus 219 ~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~l~~~~----~~~~~~h~l~ 294 (737)
...-...+.+-.+++||++.|.++..+|+++.-. - ++..-..... .....+++|.+++++-.. +++|++|.++
T Consensus 254 ~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~-~-eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LF 330 (894)
T COG2909 254 ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN-D-ELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLF 330 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh-H-HHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHH
Confidence 1222345667788999999999999999986532 2 2222222111 123348999999998865 6789999999
Q ss_pred HHHHHHHHhhhc
Q 004686 295 QEMGWEIVREHH 306 (737)
Q Consensus 295 ~~~~~~~~~~~~ 306 (737)
.+|.+.......
T Consensus 331 aeFL~~r~~~~~ 342 (894)
T COG2909 331 AEFLRQRLQREL 342 (894)
T ss_pred HHHHHhhhcccc
Confidence 999988888754
No 27
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=4.9e-11 Score=109.97 Aligned_cols=143 Identities=24% Similarity=0.281 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
|+++|+|.+|+|||++++.++.++.... ..++|+. .+..........+...+..+..... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI----APIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch----hhhHHHHHH
Confidence 5899999999999999999999776543 2233332 2222222222234444444422111 111111111
Q ss_pred HHHHhcCCeEEEEEcCCCChHH---------HHHHhcCCC--CCCCCcEEEEEeCCchh---hhhcCcccEEEcCCCChh
Q 004686 90 IRWRLCRKRVLVILDDVDQLEQ---------LQALVGNHD--WFGFGSRIIITSRDEHV---LKSHGVTNTYKVRGLDYV 155 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~~~---------~~~l~~~l~--~~~~~~~iliTtR~~~~---~~~~~~~~~~~l~~l~~~ 155 (737)
-..+.++++||+|++|+... +..++..+. ...++.++++|+|+... .........+++.+|+++
T Consensus 76 --~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 --LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred --HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 12247899999999966543 222232222 13578999999998755 333444457999999999
Q ss_pred hHHHHHhhhc
Q 004686 156 EALQLFHLKV 165 (737)
Q Consensus 156 ~~~~l~~~~~ 165 (737)
+..+++++..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=4.9e-10 Score=112.20 Aligned_cols=179 Identities=19% Similarity=0.195 Sum_probs=110.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH--
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-- 92 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-- 92 (737)
..+++|+|++|+||||+++.++......--..+++ +....+..+++..++..++.+... .+.......+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKL-----VNTRVDAEDLLRMVAADFGLETEG--RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeee-----eCCCCCHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHHH
Confidence 45899999999999999999998765321111222 222345667788888776544322 111222223322
Q ss_pred ---HhcCCeEEEEEcCCCChH--HHHHHhcCC---CCCCCCcEEEEEeCCchh---hh-h---c--CcccEEEcCCCChh
Q 004686 93 ---RLCRKRVLVILDDVDQLE--QLQALVGNH---DWFGFGSRIIITSRDEHV---LK-S---H--GVTNTYKVRGLDYV 155 (737)
Q Consensus 93 ---~l~~~~~LlilDd~~~~~--~~~~l~~~l---~~~~~~~~iliTtR~~~~---~~-~---~--~~~~~~~l~~l~~~ 155 (737)
...+++.++|+||++... .++.+.... .+......|++|...... .. . . +....+++++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 225788999999998764 344433211 111233355666654311 00 0 0 12346789999999
Q ss_pred hHHHHHhhhccCC--CCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 156 EALQLFHLKVSNG--KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 156 ~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
|..+++..+.... .......++..+.|++.++|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998876322 11223456789999999999999999888765
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=7.3e-13 Score=134.04 Aligned_cols=209 Identities=21% Similarity=0.300 Sum_probs=131.6
Q ss_pred eecCCCCCCCCCC---CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccccc
Q 004686 385 WHEYPFNSLPVSF---RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE 461 (737)
Q Consensus 385 ~~~~~~~~l~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 461 (737)
+.+..++.+|... .+.--...+++.|++.++|..+..+..|+.+.+..|.+-..+..+.++..|.+|+++.|.+ ..
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~ 135 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SH 135 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hc
Confidence 3444445555332 2334446677777777777777777777777777776666666666667777777776553 34
Q ss_pred ccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCC
Q 004686 462 VHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLV 541 (737)
Q Consensus 462 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~ 541 (737)
+|..++.|+ |+.|-+++|+ .+.+|..++....|..|+.+.|.+. .+|..++++.+|+.|++..|++.++|..++.
T Consensus 136 lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-- 210 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-- 210 (722)
T ss_pred CChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC--
Confidence 555566655 6666666543 4455666666666666666665543 3555566666666666666666666655431
Q ss_pred CCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCC
Q 004686 542 NLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLS 621 (737)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 621 (737)
-.|..||+++|++.. +|-+|.+|..|++|-|.
T Consensus 211 ----------------------------------------------LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 211 ----------------------------------------------LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ----------------------------------------------CceeeeecccCceee--cchhhhhhhhheeeeec
Confidence 136677777777655 77777788888888888
Q ss_pred CCCCcccchhh---hcCCCCCEEccccCc
Q 004686 622 GNNFFSLPSSI---NQLLKLKILCLEKCR 647 (737)
Q Consensus 622 ~n~l~~lp~~l---~~l~~L~~L~l~~n~ 647 (737)
+|.+.+-|..+ +...-.++|+..-|.
T Consensus 243 nNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 243 NNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCCCCCChHHHHhccceeeeeeecchhcc
Confidence 88777777654 344555677777774
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=4e-09 Score=111.94 Aligned_cols=271 Identities=17% Similarity=0.144 Sum_probs=152.0
Q ss_pred hhHHhhhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcccChHHHHHHHHHHHhhc-cc
Q 004686 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLME-RD 77 (737)
Q Consensus 3 ~l~~~l~~~--~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~~ 77 (737)
+|...+... ....+.+.|+|++|+|||++++.++.++++.. -..+|+. +....+..+++.+++.++... ..
T Consensus 41 ~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~~ 116 (394)
T PRK00411 41 ELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIFSEIARQLFGHPPP 116 (394)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHHHHHHHHhcCCCCC
Confidence 444455322 23345689999999999999999999776544 2345554 444456678888888887542 11
Q ss_pred ccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCCCC-CCcEEEEEeCCchhhhhc-------
Q 004686 78 LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFG-FGSRIIITSRDEHVLKSH------- 141 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~------~~~~l~~~l~~~~-~~~~iliTtR~~~~~~~~------- 141 (737)
....+.......+.+.++ +++.+||+|+++... .+..+...+.... ....+|.++.........
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~ 196 (394)
T PRK00411 117 SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSV 196 (394)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhc
Confidence 122234455566666664 457899999997753 2444443322211 133356666553322211
Q ss_pred CcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHh---CC-CchHHHHHHHH---hc--C---CCHHHHH
Q 004686 142 GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYA---GG-LPLAIEVLGSF---LC--G---RSVEEWK 209 (737)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---~G-~Pl~i~~~a~~---l~--~---~~~~~~~ 209 (737)
.....+.+++++.++..+++..++...........+.++.+++.+ .| .+.++..+-.. .. + -+.++..
T Consensus 197 ~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~ 276 (394)
T PRK00411 197 FRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVR 276 (394)
T ss_pred CCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 112367899999999999999876322111122334455555555 34 44454443221 11 1 1334444
Q ss_pred HHHHHHhcCCchhHHHHHHhhhcCCChhhHhhhheeeccc----CCCCHHHHH----HhhhcCCCCc------hhhHHHH
Q 004686 210 SALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFF----KGKDEDRVR----KKLDSCGFNS------DIGIREL 275 (737)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p----~~~~~~~l~----~~~~~~g~~~------~~~l~~L 275 (737)
...+.. -...+...+..||...+..+..++... .......+. .+....|..+ .++++.|
T Consensus 277 ~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L 349 (394)
T PRK00411 277 KAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKL 349 (394)
T ss_pred HHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHH
Confidence 444333 123345568889998888776655332 122222222 2222233322 4568999
Q ss_pred hhcccceee
Q 004686 276 LDKSLITIV 284 (737)
Q Consensus 276 ~~~~l~~~~ 284 (737)
.+.|++...
T Consensus 350 ~~~glI~~~ 358 (394)
T PRK00411 350 DMLGIINTR 358 (394)
T ss_pred HhcCCeEEE
Confidence 999998864
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.1e-12 Score=123.57 Aligned_cols=212 Identities=24% Similarity=0.108 Sum_probs=134.3
Q ss_pred ccccCCCCCcEEecCCCcCCCCCC--CCCCCCCCcEEeccCcccccc--ccccccCccccceeccccccccccCcccc-C
Q 004686 417 KGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKDCRNLVSFPKNV-C 491 (737)
Q Consensus 417 ~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~ 491 (737)
..=+++.+|+.+.++++....... ....|++++.||+++|-+... +......+|+|+.|+++.|.+.....+.. .
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 334567778888887776554432 356688888888888543322 22445678888888888877644332211 3
Q ss_pred CCCCccEEEccCCCCCcc-cCcccCCCCcccEEEccCcc-CcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccC
Q 004686 492 LMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTA-IRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (737)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 569 (737)
.+++|+.|.|++|.+... +...+..+|+|+.|.+.+|. +..-.....-++.|+.|++++|.....
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~------------- 261 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF------------- 261 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-------------
Confidence 567788888888877642 22334567788888888773 322222334467788888887762211
Q ss_pred CCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCcccc-----ccCCCCCCeEeCCCCCCcccch--hhhcCCCCCEEc
Q 004686 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSD-----IGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILC 642 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~ 642 (737)
...+..+.++.|+.|+++.|.+.+-..|+. ...+++|++|+++.|++...+. .+..+++|+.|.
T Consensus 262 ---------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 262 ---------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ---------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 112335667788888888887655445554 3567788888888888765443 456677788888
Q ss_pred cccCccCC
Q 004686 643 LEKCRNLK 650 (737)
Q Consensus 643 l~~n~~~~ 650 (737)
+..|++.+
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 77777553
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=1.9e-10 Score=112.79 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=96.1
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHH------HHHHHHHHhhc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL------QEQLLSEVLME 75 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~i~~~l~~~ 75 (737)
++|.+++..+ ..+.++|+|+.|+|||+|++++.+..++....++|+....... ...+..+ ...+...+...
T Consensus 9 ~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 85 (234)
T PF01637_consen 9 EKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADELSEALGIS 85 (234)
T ss_dssp HHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCHCHHHHHHH
T ss_pred HHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666653 2458999999999999999999998755434555554221111 0111111 11122222211
Q ss_pred ccc---------cccchhhhHHHHHHHhc--CCeEEEEEcCCCChH-------H----HHHHhcCCCCCCCCcEEEEEeC
Q 004686 76 RDL---------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-------Q----LQALVGNHDWFGFGSRIIITSR 133 (737)
Q Consensus 76 ~~~---------~~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~-------~----~~~l~~~l~~~~~~~~iliTtR 133 (737)
... ...........+.+.++ +++++||+|+++... . +..+...... .....++++.-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S 164 (234)
T PF01637_consen 86 IPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGS 164 (234)
T ss_dssp CCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEES
T ss_pred cccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECC
Confidence 111 11222333444544443 345999999996655 1 2233332222 23334445544
Q ss_pred Cchhhhh--------cCcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 134 DEHVLKS--------HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 134 ~~~~~~~--------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+...... ......+.+++++.+++++++.......... +...+..++|+..+||+|..|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp SHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred chHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4333222 2233359999999999999999876433111 34667789999999999998864
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.8e-08 Score=105.86 Aligned_cols=271 Identities=16% Similarity=0.118 Sum_probs=146.6
Q ss_pred hhHHhhhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccC------ceEEEeecchhhcccChHHHHHHHHHHHhh
Q 004686 3 KMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (737)
Q Consensus 3 ~l~~~l~~--~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 74 (737)
+|...+.. .....+.+.|+|++|+|||++++.+++++.+... ..+|+. +....+..+++..++.++..
T Consensus 26 ~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~ 101 (365)
T TIGR02928 26 ELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTLYQVLVELANQLRG 101 (365)
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCHHHHHHHHHHHHhh
Confidence 44555542 1234467999999999999999999987653322 245555 44455667788888888742
Q ss_pred ---cccccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH-----HHHHHhcC--CCCCC-CCcEEEEEeCCchhhh--
Q 004686 75 ---ERDLIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-----QLQALVGN--HDWFG-FGSRIIITSRDEHVLK-- 139 (737)
Q Consensus 75 ---~~~~~~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~-----~~~~l~~~--l~~~~-~~~~iliTtR~~~~~~-- 139 (737)
.......+..+....+.+.+. +++++||+|+++... .+..+... ..... ....+|.++.......
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l 181 (365)
T TIGR02928 102 SGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENL 181 (365)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhc
Confidence 111111223344555555553 568999999998772 13333322 11111 2334555554332211
Q ss_pred --hc--Cc-ccEEEcCCCChhhHHHHHhhhccC---CCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh---c---C---
Q 004686 140 --SH--GV-TNTYKVRGLDYVEALQLFHLKVSN---GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL---C---G--- 202 (737)
Q Consensus 140 --~~--~~-~~~~~l~~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l---~---~--- 202 (737)
.. +. ...+.+++++.+|..+++..++.. .....+...+.+..++....|.|..+..+.... . +
T Consensus 182 ~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~ 261 (365)
T TIGR02928 182 DPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAER 261 (365)
T ss_pred CHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 11 11 246889999999999999988631 111222222345556777789886544332211 1 1
Q ss_pred CCHHHHHHHHHHHhcCCchhHHHHHHhhhcCCChhhHhhhheeecccC----CCCHHHHH----HhhhcCCCCc------
Q 004686 203 RSVEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK----GKDEDRVR----KKLDSCGFNS------ 268 (737)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~----~~~~~~l~----~~~~~~g~~~------ 268 (737)
-+.+......+.+ -...+...+..||.+.+.++..+..... .+...++. .+....|..+
T Consensus 262 it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 334 (365)
T TIGR02928 262 VTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRI 334 (365)
T ss_pred CCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 1233333333322 1233445677888888766655442211 11222222 2222223222
Q ss_pred hhhHHHHhhcccceee
Q 004686 269 DIGIRELLDKSLITIV 284 (737)
Q Consensus 269 ~~~l~~L~~~~l~~~~ 284 (737)
.++++.|...|++...
T Consensus 335 ~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 335 SDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHhcCCeEEE
Confidence 4558888888888865
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=1.3e-09 Score=111.15 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=132.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch----hhhHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV----HKGINL 89 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~ 89 (737)
..+.++++|++|+|||++|+.+++++...+. +.. .........+. ..+..+....---..++ ....+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~l~-~~l~~~~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS----GPALEKPGDLA-AILTNLEEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec----cchhcCchhHH-HHHHhcccCCEEEEehHhhhCHHHHHH
Confidence 3457899999999999999999997754321 111 11011111111 11222111000000000 011222
Q ss_pred HHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhc--CcccEEEcCCCChhhHHHHHhhhccC
Q 004686 90 IRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--GVTNTYKVRGLDYVEALQLFHLKVSN 167 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~ 167 (737)
+...+.+.+..+|+|+..+...+.. . .++...|..||+...+.... +....+++++++.++..+++.+.+..
T Consensus 101 l~~~~~~~~~~~v~~~~~~~~~~~~---~---~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 101 LYPAMEDFRLDIVIGKGPSARSVRL---D---LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred hhHHHhhhheeeeeccCccccceee---c---CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 3333444444445544433322211 1 12345566677764433322 23446799999999999999987742
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---hhHHHHHHhhhcCCChhhHhhhh-
Q 004686 168 GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPN---EKVLKVLRISYDGLDRRDKEIFL- 243 (737)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~L~~~~~~~~~- 243 (737)
. .....++.++.|++.|+|.|..+..++..+. ......+. ..... ......+...+..+++..+..+.
T Consensus 175 ~--~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~-----~~a~~~~~-~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~a 246 (305)
T TIGR00635 175 L--NVEIEPEAALEIARRSRGTPRIANRLLRRVR-----DFAQVRGQ-KIINRDIALKALEMLMIDELGLDEIDRKLLSV 246 (305)
T ss_pred h--CCCcCHHHHHHHHHHhCCCcchHHHHHHHHH-----HHHHHcCC-CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 2 2234556788999999999977655544321 00000000 00001 11122255677888888877766
Q ss_pred eeecccCC-CCHHHHHHhhhcCCCCchhhHH-HHhhcccceee
Q 004686 244 DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLDKSLITIV 284 (737)
Q Consensus 244 ~~~~~p~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~~l~~~~ 284 (737)
....+.++ ...+.+...+.......+..++ .|++.+++...
T Consensus 247 l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 247 LIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 33545433 4566777777665555566677 69999999754
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.6e-12 Score=129.15 Aligned_cols=187 Identities=22% Similarity=0.318 Sum_probs=129.9
Q ss_pred EEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCcc
Q 004686 450 RLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (737)
Q Consensus 450 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 529 (737)
..|++.|. ...+|..+..|..|+.+.++.|. +..+|..++++..|++|+|+.|.+ +.+|..+..++ |+.|-+++|+
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCc
Confidence 34555543 23455556666666666666643 445566666777777777776554 34555555555 7777777777
Q ss_pred CcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccc
Q 004686 530 IRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI 609 (737)
Q Consensus 530 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 609 (737)
++.+|..++....|..|+.+.|....- .+.++++.+|+.|.+..|++.. +|..+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~sl------------------------psql~~l~slr~l~vrRn~l~~--lp~El 208 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSL------------------------PSQLGYLTSLRDLNVRRNHLED--LPEEL 208 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhc------------------------hHHhhhHHHHHHHHHhhhhhhh--CCHHH
Confidence 777777777777777777776652110 1336778889999999999876 88888
Q ss_pred cCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCC-CC-----CCccceeeccccc
Q 004686 610 GSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP-EL-----PPEIVFVGAEDCT 668 (737)
Q Consensus 610 ~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~-~l-----~~~L~~l~l~~c~ 668 (737)
..++ |..||+++|+++.+|.+|..|..|++|.|.+|++. +.| .+ ---.++|++..|.
T Consensus 209 ~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8655 99999999999999999999999999999999943 332 11 1335677777773
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=9.8e-10 Score=112.62 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=132.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchh----hhHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH----KGIN 88 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~ 88 (737)
...+.+.|+|++|+|||++|+.+++.+...+. +.. .... ... ..+..++..+....---..+++ ...+
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~---~~~-~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e 120 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL---EKP-GDLAAILTNLEEGDVLFIDEIHRLSPVVEE 120 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc---cCh-HHHHHHHHhcccCCEEEEecHhhcchHHHH
Confidence 34568899999999999999999998754321 111 1001 111 1112222221100000000000 0111
Q ss_pred HHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhc--CcccEEEcCCCChhhHHHHHhhhcc
Q 004686 89 LIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--GVTNTYKVRGLDYVEALQLFHLKVS 166 (737)
Q Consensus 89 ~l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~ 166 (737)
.+...+...+..+++|+..+...+.. ..++.+.|..|++...+.... +....++++++++++..+++.+.+.
T Consensus 121 ~l~~~~e~~~~~~~l~~~~~~~~~~~------~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 121 ILYPAMEDFRLDIMIGKGPAARSIRL------DLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred HHHHHHHhcceeeeeccCccccceee------cCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 12222233333333333222111100 012345566677654333322 2334689999999999999998874
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHH--HHhcCCchhHHHHHHhhhcCCChhhHhhhh-
Q 004686 167 NGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN--RLQEAPNEKVLKVLRISYDGLDRRDKEIFL- 243 (737)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~- 243 (737)
. ......++.++.|++.|+|.|..+..+...+ ..|..... .+...........+...+..|++..++.+.
T Consensus 195 ~--~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~ 267 (328)
T PRK00080 195 I--LGVEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRT 267 (328)
T ss_pred H--cCCCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHH
Confidence 3 2333455778999999999997655554432 12221110 000000112233455677788888888775
Q ss_pred eeecccCC-CCHHHHHHhhhcCCCCchhhHH-HHhhcccceee
Q 004686 244 DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLDKSLITIV 284 (737)
Q Consensus 244 ~~~~~p~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~~l~~~~ 284 (737)
....|+++ +..+.+...+.......++.++ .|++.+|++..
T Consensus 268 ~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 268 IIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 55555544 4667777777655555566677 99999999754
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=4.1e-10 Score=127.40 Aligned_cols=196 Identities=21% Similarity=0.188 Sum_probs=137.3
Q ss_pred CCCceEEEcccccCCCcc-ccccCcceeeeecCC--CCCCCCCC--CCCCCeeEEccCC-ccccccccccCCCCCcEEec
Q 004686 357 SNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYP--FNSLPVSF--RPEKLFKLNLCNS-RIKYLWKGIKPLKELKFMNL 430 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~--~~~l~~~~--~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l 430 (737)
...|...+-+|.+..... ...++++.|-+..+. +..++..+ .++.|++||+++| .+.++|..++.+-+||+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 455666666655543222 222368888888876 67777753 6899999999976 56799999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecccccccc--ccCccccCCCCCccEEEccCCCCCc
Q 004686 431 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL--VSFPKNVCLMKSLKILCLCGCLKLE 508 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~~~~~~ 508 (737)
+++.+...+..+.++..|.+|++..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+.......
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-- 680 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-- 680 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--
Confidence 99988877878999999999999998877777777788999999998874311 12223345566666665544322
Q ss_pred ccCcccCCCCccc----EEEccCccCcccCcccccCCCCcEEEccCCCCC
Q 004686 509 KLPQDLGEVECLE----ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ 554 (737)
Q Consensus 509 ~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 554 (737)
.+...+..+..|. .+.+.++.....+..+..+.+|+.|.+.++...
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 1222233444444 344344445566677888999999999988743
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-11 Score=118.57 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc
Q 004686 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 626 (737)
Q Consensus 586 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 626 (737)
.+++|++|++..|++.+......+..+++|+.|.+..|.++
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 45677777777777544333444555666777776666655
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=6.5e-11 Score=113.37 Aligned_cols=232 Identities=22% Similarity=0.242 Sum_probs=160.4
Q ss_pred CCCCCeeEEccCCccc-----cccccccCCCCCcEEecCCCcCCCCC----C--------CCCCCCCCcEEeccCccccc
Q 004686 398 RPEKLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIRT----P--------DFTGVPNLERLNLEGCTRLL 460 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~--------~~~~~~~L~~L~l~~~~~~~ 460 (737)
++..++.++|++|.+. .+.+.+.+.++|+.-++++- ++..+ | .+..+++|++||+|+|-+-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 5678899999999887 34556777889998888864 33221 1 24567899999999987654
Q ss_pred ccc----ccccCccccceecccccccccc-------------CccccCCCCCccEEEccCCCCCcc----cCcccCCCCc
Q 004686 461 EVH----QSVGTLKRLILLNLKDCRNLVS-------------FPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVEC 519 (737)
Q Consensus 461 ~~~----~~~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~ 519 (737)
..+ ..+.++..|++|.+.+|.+... ..+-++..+.|+.+....|.+... +...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 433 3356788999999998865321 122345678899999888876542 2345667789
Q ss_pred ccEEEccCccCc-----ccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEe
Q 004686 520 LEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLD 594 (737)
Q Consensus 520 L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 594 (737)
|+.+.++.|.+. -+...+..|++|+.|++..|.......... -..+..+++|++|+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-------------------akaL~s~~~L~El~ 247 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-------------------AKALSSWPHLRELN 247 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-------------------HHHhcccchheeec
Confidence 999999888775 233456789999999999887222111000 01255678899999
Q ss_pred ccCCCCCCCCc---cccc-cCCCCCCeEeCCCCCCc-----ccchhhhcCCCCCEEccccCccC
Q 004686 595 LSDCNLLEGAI---PSDI-GSLFSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 595 l~~~~~~~~~~---~~~l-~~~~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
+++|.+.+... ...+ ...|+|+.|.+.+|.++ .+..+....|.|+.|+|++|++.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99998544321 1111 34789999999999887 23345667899999999999863
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.5e-10 Score=106.71 Aligned_cols=60 Identities=32% Similarity=0.378 Sum_probs=37.4
Q ss_pred CCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch--hhhcCCCCCEEccccCccC
Q 004686 587 LSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 587 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~ 649 (737)
+-|.+.|.++.|.+ + -.+.++.+-+|..||+++|++..+.. +++++|.|++|.|.+|++.
T Consensus 351 LGNIKtL~La~N~i-E--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKI-E--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hcCEeeeehhhhhH-h--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 34566666666653 2 23445666677777777777664433 5677777777777777744
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=2.4e-08 Score=113.74 Aligned_cols=298 Identities=17% Similarity=0.221 Sum_probs=172.3
Q ss_pred hhHHhhhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcc---cChHHHHHHHHHHHhhcccc
Q 004686 3 KMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT---RGLVPLQEQLLSEVLMERDL 78 (737)
Q Consensus 3 ~l~~~l~~-~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~~~~~~ 78 (737)
.|.+.++. ..+...++.|.|.+|||||++++++...+.+.+...+--. +.+.... ..+.+.++++..++......
T Consensus 11 ~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~-f~q~~~~ipl~~lvq~~r~l~~~ll~~~~~ 89 (849)
T COG3899 11 QLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGK-FDQFERNIPLSPLVQAFRDLMGQLLSESDT 89 (849)
T ss_pred HHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhh-cccccCCCchHHHHHHHHHHHHHHhhccch
Confidence 34444443 3445679999999999999999999997655522111111 0011111 12223334444433211100
Q ss_pred cc----------------------------------------cchhh-----hHHHHHHHhc-CCeEEEEEcCCCChHH-
Q 004686 79 II----------------------------------------WDVHK-----GINLIRWRLC-RKRVLVILDDVDQLEQ- 111 (737)
Q Consensus 79 ~~----------------------------------------~~~~~-----~~~~l~~~l~-~~~~LlilDd~~~~~~- 111 (737)
.. ...+. ....+..+.. .++.++|+||+...+.
T Consensus 90 ~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leDlhWaD~~ 169 (849)
T COG3899 90 RILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLEDLHWADSA 169 (849)
T ss_pred HHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEecccccChh
Confidence 00 00001 1112222333 4699999999966543
Q ss_pred ----HHHHhcCCC--CC-CCCcEEEEEeCCc--hhhhhcCcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHH
Q 004686 112 ----LQALVGNHD--WF-GFGSRIIITSRDE--HVLKSHGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYV 182 (737)
Q Consensus 112 ----~~~l~~~l~--~~-~~~~~iliTtR~~--~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 182 (737)
++.+..... .. ....-.+.|.+.. .+-........+.+.||+..+...+.......... ...+..+.|
T Consensus 170 SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~---~~~p~~~~i 246 (849)
T COG3899 170 SLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL---LPAPLLELI 246 (849)
T ss_pred HHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---ccchHHHHH
Confidence 334433332 00 1122233333433 11111223357999999999999999988844222 233567889
Q ss_pred HHHhCCCchHHHHHHHHhcCC-------CHHHHHHHHHHHhcCC-chhHHHHHHhhhcCCChhhHhhhheeecccCCCCH
Q 004686 183 VNYAGGLPLAIEVLGSFLCGR-------SVEEWKSALNRLQEAP-NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGKDE 254 (737)
Q Consensus 183 ~~~~~G~Pl~i~~~a~~l~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~~~~ 254 (737)
++++.|+|+++..+...+... +...|......+.... .+.+...+....++||...|+.+...+++...++.
T Consensus 247 ~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l 326 (849)
T COG3899 247 FEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDL 326 (849)
T ss_pred HHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCH
Confidence 999999999999999888652 3445555544444332 23356678889999999999999999999999998
Q ss_pred HHHHHhhhcCCCC-chhhHHHHhhcccceee--------cCEE---eHhHHHHHHHHHHHhh
Q 004686 255 DRVRKKLDSCGFN-SDIGIRELLDKSLITIV--------NNKL---WMHDLLQEMGWEIVRE 304 (737)
Q Consensus 255 ~~l~~~~~~~g~~-~~~~l~~L~~~~l~~~~--------~~~~---~~h~l~~~~~~~~~~~ 304 (737)
+-+..++...... .....+.+....++... .... ..|+.+++.+.....+
T Consensus 327 ~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 327 DTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 8888887643322 23445555555555422 1111 3577777766544444
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1e-09 Score=116.57 Aligned_cols=196 Identities=29% Similarity=0.408 Sum_probs=129.1
Q ss_pred EEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCcc-ccceeccccccccccCccccCCCCCccEEEccCCC
Q 004686 427 FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (737)
Q Consensus 427 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 505 (737)
.+.+..+........+..++.++.|++.+|. ...++.....++ +|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 4555555544444444455666777776654 334444555553 77777777754 34444556777777777777776
Q ss_pred CCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC-CCCCcCccchhhhcccCCCCCCCCccccCCCC
Q 004686 506 KLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRF 584 (737)
Q Consensus 506 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (737)
+. .++...+..++|+.|++++|.+..+|..+..+..|+.+.+++|. ... ...+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-------------------------~~~~ 228 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-------------------------LSSL 228 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-------------------------chhh
Confidence 54 34444446778888888888888888766666778888887774 111 2335
Q ss_pred CCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCC
Q 004686 585 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (737)
Q Consensus 585 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 653 (737)
..++++..+.+.+|.+.. ++..+..+++++.|++++|.++.++. +..+.+++.|++++|......+
T Consensus 229 ~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 SNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhcccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 566677777777777433 46667777788888888888887775 7778888888888877655443
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=107.95 Aligned_cols=281 Identities=20% Similarity=0.246 Sum_probs=188.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...|.+.++|+||||||+++-.++. ++..|...+|....++++ +...+.-.+...++.... +.+..+..+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pit---D~~~v~~~~ag~~gl~~~----~g~~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPIT---DPALVFPTLAGALGLHVQ----PGDSAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccC---chhHhHHHHHhhcccccc----cchHHHHHHHH
Confidence 3568999999999999999999999 888898887766544443 344444444444443332 23344556667
Q ss_pred HhcCCeEEEEEcCCCChHH-HHHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccEEEcCCCChh-hHHHHHhhhccC---
Q 004686 93 RLCRKRVLVILDDVDQLEQ-LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYV-EALQLFHLKVSN--- 167 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~~-~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~--- 167 (737)
....+|.++++||..+... -.+....+........++.|+|.... ..++.+..+..++.. ++.++|..++..
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7778999999999987754 44555555444667788999997533 234445666666554 688888766421
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHH----HHhcC------CchhHHHHHHhhhcCCChh
Q 004686 168 GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN----RLQEA------PNEKVLKVLRISYDGLDRR 237 (737)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~s~~~L~~~ 237 (737)
.-.........+.+|+++.+|.|++|...+...+.-..+.....+. .+... ........++.||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1222334556788999999999999999999887654444333332 22221 2234667789999999999
Q ss_pred hHhhhheeecccCCCCHHHHHHhhhcCC-------CCchhhHHHHhhcccceee----cCEEeHhHHHHHHHHHHHhhhc
Q 004686 238 DKEIFLDIACFFKGKDEDRVRKKLDSCG-------FNSDIGIRELLDKSLITIV----NNKLWMHDLLQEMGWEIVREHH 306 (737)
Q Consensus 238 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~~~l~~L~~~~l~~~~----~~~~~~h~l~~~~~~~~~~~~~ 306 (737)
.+-.+..++.|...++.... .|...| |.....+..+++.+++.-. ..+|+.-+-.+-|+.....+..
T Consensus 241 e~~~~~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHHhcchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998877532 222222 2235668888888888765 2346666666666665555543
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.90 E-value=1.1e-08 Score=98.58 Aligned_cols=152 Identities=13% Similarity=0.157 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+.+.++|++|+|||+|++.+++.+.+....+.|+. .... ..... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~----------------------~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSP----------------------AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhH----------------------HHHhhc
Confidence 467999999999999999999997755555667776 2210 00000 111112
Q ss_pred cCCeEEEEEcCCCCh---HHHHH-HhcCCCCC-CCCcEEEE-EeCC---------chhhhhcCcccEEEcCCCChhhHHH
Q 004686 95 CRKRVLVILDDVDQL---EQLQA-LVGNHDWF-GFGSRIII-TSRD---------EHVLKSHGVTNTYKVRGLDYVEALQ 159 (737)
Q Consensus 95 ~~~~~LlilDd~~~~---~~~~~-l~~~l~~~-~~~~~ili-TtR~---------~~~~~~~~~~~~~~l~~l~~~~~~~ 159 (737)
.+.-+|++||++.. .+|+. +...+... ..+..+++ |++. +.+...+.....++++++++++.++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 12358999999764 23332 22211111 23555544 4443 2333344445688999999999999
Q ss_pred HHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
++++.+... .....++..+.|++++.|....+..+..
T Consensus 169 iL~~~a~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 169 VLQRNAYQR--GIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999887432 2344557788899999888766665544
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=2.2e-08 Score=97.41 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=97.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
+++.+++.. ...+.|.|+|++|+|||++|+.++++..+.....+|+. +.... ...
T Consensus 27 ~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~----~~~~~------~~~------------- 81 (226)
T TIGR03420 27 AALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP----LAELA------QAD------------- 81 (226)
T ss_pred HHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe----HHHHH------HhH-------------
Confidence 345555442 33568999999999999999999997655545566665 22111 000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCcEEEEEeCCchh---------hhhcCcccEE
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDEHV---------LKSHGVTNTY 147 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~~---~-~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~ 147 (737)
..+.+.+.+ .-+||+||++... . .+.+...+.. ...+..+|+|++.... ...+.....+
T Consensus 82 ------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 ------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred ------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 001111222 2389999996553 2 2222222111 1234478888875321 1112223578
Q ss_pred EcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004686 148 KVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSF 199 (737)
Q Consensus 148 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~ 199 (737)
+++++++++...++.+..... .....++..+.|.+.+.|+|..+..+...
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARR--GLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999998765221 12344466788888899998877766443
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=2.5e-09 Score=96.47 Aligned_cols=105 Identities=25% Similarity=0.239 Sum_probs=26.0
Q ss_pred hcCCCCceEEEcccccCCC--ccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccc-cCCCCCcEEec
Q 004686 354 STMSNLRLLEINNLYSSGN--LEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGI-KPLKELKFMNL 430 (737)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l 430 (737)
.+...++.|++.+|.|+.. +...+.+++.|++++|.+..+++...+++|++|++++|.|+.+...+ ..+++|+.|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3445667777777776642 22234455555555555555555445556666666666666554333 24556666666
Q ss_pred CCCcCCCCCC--CCCCCCCCcEEeccCccc
Q 004686 431 SHSCNLIRTP--DFTGVPNLERLNLEGCTR 458 (737)
Q Consensus 431 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 458 (737)
++|.+..... .+..+++|++|++.+|..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 6555433221 244455555555555543
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=6.2e-09 Score=110.65 Aligned_cols=188 Identities=24% Similarity=0.297 Sum_probs=150.5
Q ss_pred eEEEcccccCCCccccc--cCcceeeeecCCCCCCCCCCCCC--CCeeEEccCCccccccccccCCCCCcEEecCCCcCC
Q 004686 361 LLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSFRPE--KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (737)
Q Consensus 361 ~L~l~~~~~~~~~~~~~--~~l~~L~~~~~~~~~l~~~~~~~--~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~ 436 (737)
.+..+++.+........ ..+..|.+.++.+++++...... +|+.|++++|.+..++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 56777776644333332 46888899999999999877553 899999999999999888899999999999999888
Q ss_pred CCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCC
Q 004686 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (737)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 516 (737)
..++.....+.|+.|++++|.+ ..+|........|++|.+++|... ..+..+..+.++..+.+.+|... .++..++.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 7776665889999999999764 466665566777999999997533 44555788888888887776654 33667888
Q ss_pred CCcccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 517 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 517 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
+++++.|++++|.++.++. ++.+.+++.|+++++.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 8999999999999998887 8889999999999887
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=2.3e-09 Score=96.73 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCCCCCCCCeeEEccCCcccccccccc-CCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccc
Q 004686 393 LPVSFRPEKLFKLNLCNSRIKYLWKGIK-PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKR 471 (737)
Q Consensus 393 l~~~~~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 471 (737)
.+....+.+++.|+|++|.|+.+.. +. .+.+|+.|++++|.+... ..+..++.|++|++++|.+.. +...+.
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~---- 84 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISS-ISEGLD---- 84 (175)
T ss_dssp ------------------------S---TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHH----
T ss_pred ccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCc-cccchH----
Confidence 3333344455666666666665532 32 355555666665544432 234445555555555544332 111111
Q ss_pred cceeccccccccccCccccCCCCCccEEEccCCCCCc-ccCcccCCCCcccEEEccCccCcccCc----ccccCCCCcEE
Q 004686 472 LILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLKIF 546 (737)
Q Consensus 472 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~~----~~~~l~~L~~L 546 (737)
..+++|+.|++++|.+.. ..-..+..+++|+.|++.+|.++..+. .+..+|+|+.|
T Consensus 85 -------------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 85 -------------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp -------------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred -------------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 134444455554444432 112335566777777777777764443 34567788888
Q ss_pred EccC
Q 004686 547 SLHG 550 (737)
Q Consensus 547 ~l~~ 550 (737)
|-..
T Consensus 146 D~~~ 149 (175)
T PF14580_consen 146 DGQD 149 (175)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6543
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.78 E-value=8e-08 Score=94.72 Aligned_cols=150 Identities=22% Similarity=0.325 Sum_probs=93.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH-H
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI-R 91 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~ 91 (737)
+......+|||+|+||||||+.++......|...--+ . .++.+ +++++.. . .
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----~---~gvkd-lr~i~e~------------------a~~ 98 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----T---SGVKD-LREIIEE------------------ARK 98 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----c---ccHHH-HHHHHHH------------------HHH
Confidence 3556788999999999999999999776655432222 1 22222 2222222 1 1
Q ss_pred HHhcCCeEEEEEcCCCC--hHHHHHHhcCCCCCCCCcEEEE--EeCCchh---hhhcCcccEEEcCCCChhhHHHHHhhh
Q 004686 92 WRLCRKRVLVILDDVDQ--LEQLQALVGNHDWFGFGSRIII--TSRDEHV---LKSHGVTNTYKVRGLDYVEALQLFHLK 164 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~--~~~~~~l~~~l~~~~~~~~ili--TtR~~~~---~~~~~~~~~~~l~~l~~~~~~~l~~~~ 164 (737)
....++++++.+|++.. ..+-+.|++.. ..|..++| ||.++.. ....+...++++++|+.++..+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 12348999999999943 34456665553 46666654 5555421 112234558999999999999999884
Q ss_pred ccCCCCCCh-----HHHHHHHHHHHHhCCCchH
Q 004686 165 VSNGKQPTD-----YRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 165 ~~~~~~~~~-----~~~~~~~~i~~~~~G~Pl~ 192 (737)
+.......+ ..++..+.+++.++|-...
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 322211111 3455677888888887654
No 50
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.77 E-value=3.2e-08 Score=86.90 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=76.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc-----cCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (737)
+.+.+.|+|++|+|||++++.++...... -..++|+. +....+...+.++++.++...... ..+..+..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 34789999999999999999999976442 23456766 555568899999999997766544 344555666
Q ss_pred HHHHHhcCC-eEEEEEcCCCCh-H--HHHHHhcCCCCCCCCcEEEEEeCC
Q 004686 89 LIRWRLCRK-RVLVILDDVDQL-E--QLQALVGNHDWFGFGSRIIITSRD 134 (737)
Q Consensus 89 ~l~~~l~~~-~~LlilDd~~~~-~--~~~~l~~~l~~~~~~~~iliTtR~ 134 (737)
.+.+.+... ..+||+|+++.. . .++.+..... ..+.++|++.++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777766554 469999999876 3 2444433222 567788888776
No 51
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=3.3e-08 Score=85.91 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=79.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+++.|.|+.|+||||++++++.+.. ....++|+. +....... .... +..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~~~~-----~~~~-------------~~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPRDRR-----LADP-------------DLLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHHHHH-----Hhhh-------------hhHHHHHHhh
Confidence 36899999999999999999998765 334566665 22111100 0000 0123333334
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhh-----c-CcccEEEcCCCChhhH
Q 004686 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-----H-GVTNTYKVRGLDYVEA 157 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~-----~-~~~~~~~l~~l~~~~~ 157 (737)
.+++.++++|+++...+|......+.+..+..+|++|+........ . +....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4578899999999998888888777766667899999987544321 1 2233688999988763
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=1.1e-10 Score=114.17 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=166.7
Q ss_pred CCeeEEccCCccc---cccccccCCCCCcEEecCCCcCCCCCCC---CCCCCCCcEEeccCcccccccc--ccccCcccc
Q 004686 401 KLFKLNLCNSRIK---YLWKGIKPLKELKFMNLSHSCNLIRTPD---FTGVPNLERLNLEGCTRLLEVH--QSVGTLKRL 472 (737)
Q Consensus 401 ~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L 472 (737)
.|+.|+++|+.-. .+-....+++++++|.+.+|..+++..- -..|++|++|++..|..++... .....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4555556555322 3333357788999998888875554331 2357889999998877665432 234578899
Q ss_pred ceecccccccccc--CccccCCCCCccEEEccCCCCCc--ccCcccCCCCcccEEEccCc-cCcccC--cccccCCCCcE
Q 004686 473 ILLNLKDCRNLVS--FPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGT-AIRQIP--PSIVQLVNLKI 545 (737)
Q Consensus 473 ~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~l~--~~~~~l~~L~~ 545 (737)
+++++++|+-+.. +.....++..++.+.+.+|.-.+ .+...-+.+..+..+++..+ .+++.. ..-..+..|++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999876543 22334556667777666665432 11111123344555554443 233221 11234678888
Q ss_pred EEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCC-CCCCCCCcEEeccCCCCCCCCcccccc-CCCCCCeEeCCCC
Q 004686 546 FSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIG-SLFSLEAIDLSGN 623 (737)
Q Consensus 546 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~n 623 (737)
+..+++..... ..+.. -.++.+|+.|.+..|+.++......++ +++.|+.+++..+
T Consensus 299 l~~s~~t~~~d----------------------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 299 LCYSSCTDITD----------------------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hcccCCCCCch----------------------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 88887764222 11111 246788999999999866655555453 7889999999988
Q ss_pred CCc---ccchhhhcCCCCCEEccccCccCCCCC-----C---CCCccceeecccccccccccccccccCCCCceEEEecC
Q 004686 624 NFF---SLPSSINQLLKLKILCLEKCRNLKSLP-----E---LPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNC 692 (737)
Q Consensus 624 ~l~---~lp~~l~~l~~L~~L~l~~n~~~~~~~-----~---l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~ 692 (737)
... ++-.--.+++.|++|.+++|...++.. . --..+..+++.+||.+++-.+. .+..|
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----------~l~~c 425 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----------HLSIC 425 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-----------HHhhC
Confidence 544 233223678999999999998876541 1 1156777778888777765443 55688
Q ss_pred CCcccccccc
Q 004686 693 FKLVEDQVSK 702 (737)
Q Consensus 693 ~~L~~L~l~~ 702 (737)
+.|+.+++.+
T Consensus 426 ~~Leri~l~~ 435 (483)
T KOG4341|consen 426 RNLERIELID 435 (483)
T ss_pred cccceeeeec
Confidence 8888888854
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2.4e-09 Score=100.17 Aligned_cols=126 Identities=22% Similarity=0.165 Sum_probs=80.9
Q ss_pred CCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEc
Q 004686 422 LKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCL 501 (737)
Q Consensus 422 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 501 (737)
-+.|+.+|+++|.+........-.|.++.|++++|.+... ..+..+++|++||+++|.+. .+...-.++.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3466677777776665555555567777777777665433 23666777777777776543 33333345667777777
Q ss_pred cCCCCCcccCcccCCCCcccEEEccCccCccc--CcccccCCCCcEEEccCCC
Q 004686 502 CGCLKLEKLPQDLGEVECLEELDVGGTAIRQI--PPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 502 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~ 552 (737)
++|.+.+ .++++++.+|..|++++|++..+ ...+++++.|+.+.+.+|.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7766533 34566777777777777777743 3456777777777777776
No 54
>PRK08727 hypothetical protein; Validated
Probab=98.66 E-value=2e-07 Score=90.10 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=91.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
...++|+|++|+|||.|++.+++...+....++|+. ... ....+.. ..+.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~~------~~~~~~~-------------------~~~~l 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQA------AAGRLRD-------------------ALEAL 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HHH------hhhhHHH-------------------HHHHH
Confidence 356999999999999999999997766555667765 211 1111111 11112
Q ss_pred cCCeEEEEEcCCCChH---HHH-HHhcCCCC-CCCCcEEEEEeCCchh---------hhhcCcccEEEcCCCChhhHHHH
Q 004686 95 CRKRVLVILDDVDQLE---QLQ-ALVGNHDW-FGFGSRIIITSRDEHV---------LKSHGVTNTYKVRGLDYVEALQL 160 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~---~~~-~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~l~~~~~~~l 160 (737)
.+.-+||+||++... .+. .+...+.. ...+..+|+|++...- ...+.....++++++++++..++
T Consensus 92 -~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 92 -EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred -hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 233589999996442 122 12211111 1246679999985321 11222345789999999999999
Q ss_pred HhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
+.+++... .....++..+.|+++++|-...+.
T Consensus 171 L~~~a~~~--~l~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 171 LRERAQRR--GLALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHHH
Confidence 99876332 233455677888888887765553
No 55
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.65 E-value=5.9e-07 Score=85.67 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=94.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccC--ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
....++|+|+.|+|||.|++++++.+.+... .++|+. ..++...+...+.. .....+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhh
Confidence 4456899999999999999999997765433 355654 23344444444221 1133444
Q ss_pred HHhcCCeEEEEEcCCCChHH---HH----HHhcCCCCCCCCcEEEEEeCCch---------hhhhcCcccEEEcCCCChh
Q 004686 92 WRLCRKRVLVILDDVDQLEQ---LQ----ALVGNHDWFGFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYV 155 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~~~---~~----~l~~~l~~~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~ 155 (737)
+.+. .-=++++||++.... |. .+...+. ..|.++|+|++..+ ....+.....+++.+.+++
T Consensus 93 ~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 93 DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 5554 345788999965421 22 1111111 24778999997532 1222334557999999999
Q ss_pred hHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+..+++.+++.. ......++.++.|++++.+....+..+..
T Consensus 170 ~r~~il~~~a~~--~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 170 DRRRILQKKAKE--RGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHHHHH--TT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999998733 22335567788888888777666654433
No 56
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.62 E-value=1.4e-06 Score=81.74 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=94.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------------cCceEEEeecchhhcccCh
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ---------------------FEASSFLANVREVSVTRGL 61 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 61 (737)
.|.+.+..+ .-...+.++|+.|+|||++|+.++..+... +....++.. ......
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~- 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIK- 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCC-
Confidence 455556543 234689999999999999999999976432 111111110 000000
Q ss_pred HHHHHHHHHHHhhcccccccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhh
Q 004686 62 VPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVL 138 (737)
Q Consensus 62 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~ 138 (737)
.+.++++...+... -..+.+-++|+|+++... ..+.++..+...++...+|++|++. .+.
T Consensus 78 ~~~i~~i~~~~~~~-----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 78 VDQVRELVEFLSRT-----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHHHHHHHHHHccC-----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 11111122211000 012566799999997653 3666666665545667777777653 222
Q ss_pred hhc-CcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch
Q 004686 139 KSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (737)
Q Consensus 139 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 191 (737)
... +....+++.+++.++..+++.+. + ..++.++.+++.++|.|.
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~---g-----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ---G-----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc---C-----CCHHHHHHHHHHcCCCcc
Confidence 211 22347999999999999999876 1 224678899999999985
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=6.7e-09 Score=99.81 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=158.3
Q ss_pred HHhhcccCCceEEEEEecCCccc----ccChhhhhcCCCCceEEEcccccCC----Ccccc----------ccCcceeee
Q 004686 324 HVLSKYMGTDAVEAIIVDVPEMT----ELEAKSFSTMSNLRLLEINNLYSSG----NLEYL----------SNNLRYLKW 385 (737)
Q Consensus 324 ~~~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~----------~~~l~~L~~ 385 (737)
.+.........++.+.+++|.+. ++....+.+.++|+..++++. +++ .+|.. .++|+.|++
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 33444556678888999888433 344455677788888888774 222 22221 125666666
Q ss_pred ecCCCCC-CCCCC-----CCCCCeeEEccCCcccccc--------------ccccCCCCCcEEecCCCcCCCCCCC----
Q 004686 386 HEYPFNS-LPVSF-----RPEKLFKLNLCNSRIKYLW--------------KGIKPLKELKFMNLSHSCNLIRTPD---- 441 (737)
Q Consensus 386 ~~~~~~~-l~~~~-----~~~~L~~L~l~~~~i~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~~---- 441 (737)
++|.+-. .+..+ .+..|+.|.|+||++.... .....-++||++....|+.......
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 6654221 11111 4678999999999987321 2245568999999999987655432
Q ss_pred -CCCCCCCcEEeccCccccc----cccccccCccccceeccccccccc----cCccccCCCCCccEEEccCCCCCcccCc
Q 004686 442 -FTGVPNLERLNLEGCTRLL----EVHQSVGTLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEKLPQ 512 (737)
Q Consensus 442 -~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 512 (737)
+...+.|+.+.++.|.+-. .+...+..|++|+.||+..|.++. .+...++.+++|+.|++++|.+...-..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 6677899999999987642 233567899999999999998864 3456678888999999999988653322
Q ss_pred ----cc-CCCCcccEEEccCccCc-----ccCcccccCCCCcEEEccCCCC
Q 004686 513 ----DL-GEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKG 553 (737)
Q Consensus 513 ----~l-~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~ 553 (737)
.+ ...|+|+.|.+.+|.++ .+...+...+.|+.|++++|..
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22 24789999999999887 2333455688999999999983
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.61 E-value=4.1e-07 Score=88.10 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=91.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+.+.|+|++|+|||+|++.+++...+....+.|+. +.... .... .+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~~----------------------~~~~~~ 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFVP----------------------EVLEGM 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhhH----------------------HHHHHh
Confidence 358999999999999999999997665444556665 22100 0000 111111
Q ss_pred cCCeEEEEEcCCCCh---HHHH----HHhcCCCCCCCC-cEEEEEeCCchh---------hhhcCcccEEEcCCCChhhH
Q 004686 95 CRKRVLVILDDVDQL---EQLQ----ALVGNHDWFGFG-SRIIITSRDEHV---------LKSHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 95 ~~~~~LlilDd~~~~---~~~~----~l~~~l~~~~~~-~~iliTtR~~~~---------~~~~~~~~~~~l~~l~~~~~ 157 (737)
.. .-++++||++.. ..|+ .+..... ..| ..+|+||+.+.. ...+....++++.++++++.
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 11 237899999654 2232 2211111 123 478899886422 22233446899999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
.+++.+++... .....++..+.|++++.|....+..+..
T Consensus 173 ~~~l~~~a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 173 LQALQLRARLR--GFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99998866332 2344567788899999888766554433
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.8e-06 Score=89.60 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=95.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----ccccchhhhHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKGINLI 90 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 90 (737)
...+.++|+.|+||||+|+.++..+..... +- ..+|....+ +.++......+.. ......++ +..+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~---~~--~~pc~~c~~----c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i 107 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNG---IT--SNPCRKCII----CKEIEKGLCLDLIEIDAASRTKVEE-MREI 107 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCC---CC--CCCCCCCHH----HHHHhcCCCCceEEecccccCCHHH-HHHH
Confidence 467899999999999999999997642110 00 000111111 1111111000000 00001111 1122
Q ss_pred HHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHH
Q 004686 91 RWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+.+ .+++-++|+|+++... .+++++..+.+.+....+|++|.+. .+... .+....+++.+++.++..+++
T Consensus 108 ~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 108 LDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFL 187 (363)
T ss_pred HHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHH
Confidence 2221 2456699999998775 3667776666556677777776543 22222 122347899999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+.+.... ....++.++.|++.++|.|..+...
T Consensus 188 ~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 188 KYILIKES--IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 88663321 2234466788999999988654433
No 60
>PRK05642 DNA replication initiation factor; Validated
Probab=98.58 E-value=8e-07 Score=85.91 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=93.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+.++|+|++|+|||.|++.+++.+.+.-..++|+. .. ++.. . ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~~------~~~~----~---------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----LA------ELLD----R---------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----HH------HHHh----h---------------hHHHHHhh
Confidence 367899999999999999999987665545667765 11 1111 1 01122223
Q ss_pred cCCeEEEEEcCCCCh---HHHHH-HhcCCCC-CCCCcEEEEEeCCch---------hhhhcCcccEEEcCCCChhhHHHH
Q 004686 95 CRKRVLVILDDVDQL---EQLQA-LVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEALQL 160 (737)
Q Consensus 95 ~~~~~LlilDd~~~~---~~~~~-l~~~l~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~~~~~l 160 (737)
.+-. ++|+||++.. ..|+. +...+.. ...|..+|+|++... ....+.....+++.++++++..++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6788999633 22322 2222211 134667888887532 111222345789999999999999
Q ss_pred HhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004686 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSF 199 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~ 199 (737)
+++++... .....++..+.|++++.|....+..+...
T Consensus 175 l~~ka~~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 175 LQLRASRR--GLHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99665332 12344577888999898887666655443
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.4e-06 Score=92.71 Aligned_cols=181 Identities=13% Similarity=0.149 Sum_probs=99.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 82 (737)
.|..++..+ .-...+.++|+.|+||||+|+.+++.+...-. ... ..|..+.+...+...-...+..-.......
T Consensus 27 ~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~----~PCG~C~sCr~I~~G~h~DviEIDAas~rg 100 (830)
T PRK07003 27 ALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTS----QPCGVCRACREIDEGRFVDYVEMDAASNRG 100 (830)
T ss_pred HHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCC----CCCcccHHHHHHhcCCCceEEEeccccccc
Confidence 344555543 22467789999999999999999996632100 000 012111111111110000000000000011
Q ss_pred hhhhHHHHHHH----hcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCCh
Q 004686 83 VHKGINLIRWR----LCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDY 154 (737)
Q Consensus 83 ~~~~~~~l~~~----l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~ 154 (737)
.++..+.+... ..++.-++|||+++.... ++.++..+-+-..+.++|++|++.. +... .+....+.+++++.
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~ 180 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCH
Confidence 11111111111 124556899999987754 7777766554456788888888742 2211 12234789999999
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 191 (737)
++..+.+.+.+..+ ......+.++.|++.++|...
T Consensus 181 eeIv~~L~~Il~~E--gI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 181 GHIVSHLERILGEE--RIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHH
Confidence 99999998876332 223455678889999999764
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=5.2e-07 Score=93.86 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=100.6
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---cccc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DLII 80 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~ 80 (737)
|..++..+. -...+.++|+.|+||||+|+.++..+....... .. .|....+...+.......+..-. ....
T Consensus 30 L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~----pCg~C~sC~~i~~g~~~dviEIdaas~~gV 103 (484)
T PRK14956 30 LQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NE----PCNECTSCLEITKGISSDVLEIDAASNRGI 103 (484)
T ss_pred HHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-cc----ccCCCcHHHHHHccCCccceeechhhcccH
Confidence 444444432 235789999999999999999999764321100 00 12222222222211111100000 0000
Q ss_pred cchhhhHHHHHH-HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChh
Q 004686 81 WDVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYV 155 (737)
Q Consensus 81 ~~~~~~~~~l~~-~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~ 155 (737)
.++.+..+.+.. -..++.-++|+|+++... .+++++..+-.......+|++|.. ..+... .+....+.+++++.+
T Consensus 104 d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~ 183 (484)
T PRK14956 104 ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLS 183 (484)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHH
Confidence 111111111111 123566799999997664 477877776544456666655554 333222 222347899999999
Q ss_pred hHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+..+++.+.+... ......+.+..|++.++|.+.-...
T Consensus 184 ~i~~~L~~i~~~E--gi~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 184 VLQDYSEKLCKIE--NVQYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCChHHHHHH
Confidence 9999998876332 2234556788899999999865443
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.1e-09 Score=102.50 Aligned_cols=198 Identities=25% Similarity=0.194 Sum_probs=114.4
Q ss_pred CCeeEEccCCccc--cccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcccccccc--ccccCcccccee
Q 004686 401 KLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILL 475 (737)
Q Consensus 401 ~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 475 (737)
.|++|||++..|+ .+..-++.|++|+.|.|.+++....+-. +..-.+|+.|+++.|...+... ..+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 6888888888877 4445578899999999999877655443 6677889999999887654432 346788888888
Q ss_pred ccccccccccCcc-ccCC-CCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCC
Q 004686 476 NLKDCRNLVSFPK-NVCL-MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG 553 (737)
Q Consensus 476 ~l~~n~~~~~~~~-~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 553 (737)
++++|....+.-. .+.+ -++|+.|+++++.-.- ...++..-...|++|..|++++|-.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------QKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------hhhHHHHHHHhCCceeeeccccccc
Confidence 8888865443211 1111 2356666666643210 0011222233455555666555442
Q ss_pred CCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCC-cccchhh
Q 004686 554 QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNF-FSLPSSI 632 (737)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l-~~lp~~l 632 (737)
..+ ..+..+-.++.|++|.++.|..+.....-.+...|+|.+|++-+|-= +...-..
T Consensus 326 l~~----------------------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~ 383 (419)
T KOG2120|consen 326 LKN----------------------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLK 383 (419)
T ss_pred cCc----------------------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHH
Confidence 222 11122445666777777777633222222346677777777776621 1222223
Q ss_pred hcCCCCCE
Q 004686 633 NQLLKLKI 640 (737)
Q Consensus 633 ~~l~~L~~ 640 (737)
..+++|+.
T Consensus 384 e~~~~lki 391 (419)
T KOG2120|consen 384 EMLSHLKI 391 (419)
T ss_pred HhCccccc
Confidence 45566554
No 64
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.55 E-value=2.3e-06 Score=93.29 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=84.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc-----cC--ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~-----f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 87 (737)
..+++|+|++|+|||++++.+..++++. .. .++++. |........+...|..+++..............
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evL 856 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKIL 856 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccCCHHHHHHHHHHHHcCCCCCccccHHHHH
Confidence 3678899999999999999999866422 22 245665 554556777777777777443322222223344
Q ss_pred HHHHHHhc---CCeEEEEEcCCCChH-----HHHHHhcCCCCCCCCcEEE--EEeCCch----hhhhcC---cccEEEcC
Q 004686 88 NLIRWRLC---RKRVLVILDDVDQLE-----QLQALVGNHDWFGFGSRII--ITSRDEH----VLKSHG---VTNTYKVR 150 (737)
Q Consensus 88 ~~l~~~l~---~~~~LlilDd~~~~~-----~~~~l~~~l~~~~~~~~il--iTtR~~~----~~~~~~---~~~~~~l~ 150 (737)
..+...+. ....+||||+++... .+-.+..... ..+++|+ .++.+.. +...+. ....+...
T Consensus 857 erLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~ 934 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFS 934 (1164)
T ss_pred HHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhccccccccCC
Confidence 44544442 234699999997553 1222222111 1344433 3343211 111111 11236679
Q ss_pred CCChhhHHHHHhhhcc
Q 004686 151 GLDYVEALQLFHLKVS 166 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~ 166 (737)
|++.+|..+++..++.
T Consensus 935 PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 935 PYKGDEIEKIIKERLE 950 (1164)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999874
No 65
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=7.5e-07 Score=85.28 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=89.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+.++|+|++|+|||+|++.++... .+.|+. .. .+..++...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~----~~------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-----DALLIH----PN------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-----CCEEec----HH------HcchHHHHhh----------------------
Confidence 4679999999999999999888753 233554 11 1111122111
Q ss_pred cCCeEEEEEcCCCCh----HHHHHHhcCCCCCCCCcEEEEEeCCc---------hhhhhcCcccEEEcCCCChhhHHHHH
Q 004686 95 CRKRVLVILDDVDQL----EQLQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 95 ~~~~~LlilDd~~~~----~~~~~l~~~l~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+ -+|++||++.. +.+-++..... ..|..+|+|++.. .....+.....++++++++++..+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 01 27888999543 22222222222 3467788888742 22223344568999999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
++.+... .....++..+.|++++.|....+..+..
T Consensus 163 ~~~~~~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 163 FKLFADR--QLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9887432 2335567888899999888777665433
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=1.2e-06 Score=92.74 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=95.2
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 83 (737)
+.+++... ..+.+.++|++|+||||+|+.+++.....|. .+. .. ..... -++++...
T Consensus 27 L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~----a~-~~~~~-~ir~ii~~------------ 83 (413)
T PRK13342 27 LRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS----AV-TSGVK-DLREVIEE------------ 83 (413)
T ss_pred HHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe----cc-cccHH-HHHHHHHH------------
Confidence 45555443 3457888999999999999999997654332 111 00 11111 11222222
Q ss_pred hhhHHHHHHH-hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEE--EeCCch--hhh-hcCcccEEEcCCCChh
Q 004686 84 HKGINLIRWR-LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII--TSRDEH--VLK-SHGVTNTYKVRGLDYV 155 (737)
Q Consensus 84 ~~~~~~l~~~-l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~ili--TtR~~~--~~~-~~~~~~~~~l~~l~~~ 155 (737)
.... ..+++.+|++|+++... ..+.++..+. .+..+++ ||.+.. +.. ..+....+++.+++++
T Consensus 84 ------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e 154 (413)
T PRK13342 84 ------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEE 154 (413)
T ss_pred ------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHH
Confidence 1111 13578899999997653 3555555443 3444444 333321 111 1122357899999999
Q ss_pred hHHHHHhhhccCCCCCC-hHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 156 EALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+..+++.+.+....... ...++..+.|++.++|.+..+..+..
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999988653211111 34456778899999999877655443
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.53 E-value=4e-07 Score=83.88 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
.....-+.+|||+|+||||||.-+++.....|. +.. .... ....+++. ++.
T Consensus 47 ~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i---~k~~dl~~-il~--------------------- 97 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAI---EKAGDLAA-ILT--------------------- 97 (233)
T ss_dssp TS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHHHHH-HHH---------------------
T ss_pred CCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhh---hhHHHHHH-HHH---------------------
Confidence 345678999999999999999999998765542 221 0001 11122211 111
Q ss_pred HHhcCCeEEEEEcCCCChHH--HHHHhcCC--------CCCC-----------CCcEEEEEeCCchhhhhcCccc--EEE
Q 004686 92 WRLCRKRVLVILDDVDQLEQ--LQALVGNH--------DWFG-----------FGSRIIITSRDEHVLKSHGVTN--TYK 148 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~~~--~~~l~~~l--------~~~~-----------~~~~iliTtR~~~~~~~~~~~~--~~~ 148 (737)
.+ +++.++.+|++..... -+.+.+.. ...+ +..-|=-|||..-+....+... ..+
T Consensus 98 -~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~ 175 (233)
T PF05496_consen 98 -NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLR 175 (233)
T ss_dssp -T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE
T ss_pred -hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecc
Confidence 12 2344666788755421 11111111 0111 2334567888765555444333 457
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
+.-++.+|-.+++.+.+ .....+...+.+.+|++++.|.|....-+-+..
T Consensus 176 l~~Y~~~el~~Iv~r~a--~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSA--RILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ----THHHHHHHHHHCC--HCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--HHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99999999999998876 334455677889999999999997655444433
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.52 E-value=7.9e-07 Score=90.76 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=95.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
.|.+++.. +..+-+.++|++|+|||++|+.+++.+.. .|...+.-.+ .+...++ +..++..+.......
T Consensus 24 ~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~-~~vr~~i~~~~~~~~---- 93 (319)
T PLN03025 24 RLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGI-DVVRNKIKMFAQKKV---- 93 (319)
T ss_pred HHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccH-HHHHHHHHHHHhccc----
Confidence 34444443 33345789999999999999999997632 3332211111 1111122 123333322111000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CcccEEEcCCCChhhH
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKVRGLDYVEA 157 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~~~ 157 (737)
..-.++.-++|+|+++.... -.++...+...+...++++++... .+.... +....++++++++++.
T Consensus 94 ----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 94 ----------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred ----------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 00024567999999976632 344443333234556777766542 221111 1224789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
.+.+...+.... ....++..+.|++.++|....+.
T Consensus 164 ~~~L~~i~~~eg--i~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 164 LGRLMKVVEAEK--VPYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 999988763322 22334678889999999875444
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.4e-06 Score=96.39 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=68.7
Q ss_pred cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCC
Q 004686 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (737)
Q Consensus 95 ~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 170 (737)
.+++-++|||+++.. ...++++..+-.-+...++|++|.+. .+... .....++++++++.++..+++.+.+...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-- 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-- 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--
Confidence 367789999999766 44777766665445667777666553 33222 1223479999999999999998866332
Q ss_pred CChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 171 PTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 171 ~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
......+.++.|++.++|.|..+..++
T Consensus 195 gI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 195 QLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223445678889999999987555443
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.52 E-value=1.6e-06 Score=91.95 Aligned_cols=166 Identities=17% Similarity=0.229 Sum_probs=101.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...++|+|+.|+|||.|++.+++.+.... ..++|+. ..++..++...+.... ...+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~--------~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH--------KEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh--------hHHHHHHH
Confidence 45689999999999999999999765432 2344544 2344555554432110 12334444
Q ss_pred HhcCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCcEEEEEeCCch---------hhhhcCcccEEEcCCCChhhHH
Q 004686 93 RLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~---~-~~~l~~~l~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~~~~ 158 (737)
.+.. .-+||+||++... . .+.+...+.. ...+..||+|+.... +...+.....+++++++.++..
T Consensus 203 ~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 203 EICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred Hhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 4433 3478899996442 1 2222222211 123446888876431 2222334457889999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSF 199 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~ 199 (737)
+++.+++..........++..+.|++.++|.|..+.-+...
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99998874322111355678899999999999887766543
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=1.5e-06 Score=90.39 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=96.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc-C-ceEEEeecchhhcccChHHHHH--HHHHHHhhcccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQE--QLLSEVLMERDL 78 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~~~~ 78 (737)
++.+++.. +..+.+.++|++|+|||++|+.+++.+.... . ..+++......... ...+.. ......... ..
T Consensus 26 ~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~ 100 (337)
T PRK12402 26 RLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKYLVEDPRFAHFLGTD-KR 100 (337)
T ss_pred HHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhhhhcCcchhhhhhhh-hh
Confidence 34444443 3345688999999999999999999764332 2 23444311100000 000000 000000000 00
Q ss_pred cccchhhhHHHHHHHh------cCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CcccEEE
Q 004686 79 IIWDVHKGINLIRWRL------CRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYK 148 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l------~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~ 148 (737)
......+..+.+.+.. .+.+-+||+||++.... ...+...+.......++|+|+... .+.... .....++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~ 180 (337)
T PRK12402 101 IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLF 180 (337)
T ss_pred hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEE
Confidence 0000011122211111 13445899999976632 333333322224456777777543 222211 2234688
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
+.+++.++..+++.+.+.... ....++.++.+++.++|.+..+....
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 181 FRAPTDDELVDVLESIAEAEG--VDYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred ecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988763322 22445778889999999876654433
No 72
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.6e-07 Score=104.59 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=87.2
Q ss_pred CCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEcc
Q 004686 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 526 (737)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 526 (737)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888888888999998888888888888888889999998888888888888888889999998
Q ss_pred CccCc-ccCcccccC-CCCcEEEccCCC
Q 004686 527 GTAIR-QIPPSIVQL-VNLKIFSLHGCK 552 (737)
Q Consensus 527 ~~~~~-~l~~~~~~l-~~L~~L~l~~~~ 552 (737)
+|.++ .+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 88887 777776553 456677777665
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6e-06 Score=84.60 Aligned_cols=166 Identities=21% Similarity=0.174 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCc--eEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
-+.|+|++|+|||++++.++.++++.... ++|+. |....+..++..+++.+++.... ......+..+.+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSKILNKLGKVPL-TGDSSLEILKRLYDNL 118 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHHHHHHcCCCCC-CCCchHHHHHHHHHHH
Confidence 49999999999999999999988765433 57887 77888899999999998762221 1123334445555555
Q ss_pred c--CCeEEEEEcCCCChHH-----HHHHhcCCCCCCCCcE--EEEEeCCchh--------hhhcCcccEEEcCCCChhhH
Q 004686 95 C--RKRVLVILDDVDQLEQ-----LQALVGNHDWFGFGSR--IIITSRDEHV--------LKSHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 95 ~--~~~~LlilDd~~~~~~-----~~~l~~~l~~~~~~~~--iliTtR~~~~--------~~~~~~~~~~~l~~l~~~~~ 157 (737)
. ++.+++|+|+++.... +-.+....... .++ ++..+-+... ....+.. .+..+|.+.+|.
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el 195 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEEL 195 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHH
Confidence 3 5789999999976643 22333222211 333 3333333222 1122222 478899999999
Q ss_pred HHHHhhhccC---CCCCChHHHHHHHHHHHHhCCCc
Q 004686 158 LQLFHLKVSN---GKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 158 ~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
.+++.+++.. .....+.--+....++...+|-.
T Consensus 196 ~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA 231 (366)
T COG1474 196 YDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA 231 (366)
T ss_pred HHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence 9999998732 22233333334444555555533
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.49 E-value=1.3e-06 Score=84.67 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=89.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+.+.|+|++|+|||+||+.+++.....-..++++. +.. .. ..+ ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~---~~---~~~-----------------------~~ 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS---PL---LAF-----------------------DF 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH---hH---HHH-----------------------hh
Confidence 3468999999999999999999997644433455554 111 00 000 01
Q ss_pred hcCCeEEEEEcCCCChHH--HHHHhcCCCCC-CCCc-EEEEEeCCchhhh--------hcCcccEEEcCCCChhhHHHHH
Q 004686 94 LCRKRVLVILDDVDQLEQ--LQALVGNHDWF-GFGS-RIIITSRDEHVLK--------SHGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~--~~~l~~~l~~~-~~~~-~iliTtR~~~~~~--------~~~~~~~~~l~~l~~~~~~~l~ 161 (737)
. ...-++|+||++.... ...+...+... ..+. .+++|++...... .+.....++++++++++...++
T Consensus 88 ~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 1 2334788999965432 22222222111 1233 4666666432111 1222357899999999888888
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
.+..... .....++..+.+++...|++..+..+...+
T Consensus 167 ~~~~~~~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAER--GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7654221 123445677888889999998877665543
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.9e-06 Score=92.38 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=101.5
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc----cc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER----DL 78 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~ 78 (737)
.|..++..+. -...+.++|+.|+||||+|+.++..+.... +.. ...|..+. .++.+...-..+. ..
T Consensus 26 ~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~-~~pCg~C~----sC~~I~~g~hpDviEIDAA 95 (702)
T PRK14960 26 ALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT-STPCEVCA----TCKAVNEGRFIDLIEIDAA 95 (702)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC-CCCCccCH----HHHHHhcCCCCceEEeccc
Confidence 3455555432 247889999999999999999999763211 110 00111111 1111111100000 00
Q ss_pred cccchhhhHHHHHHH-----hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWR-----LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~-----l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l 149 (737)
.....++.. .+.+. ..+++-++|+|+++... ...+++..+-....+..+|++|.+.. +... .+...++++
T Consensus 96 s~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feF 174 (702)
T PRK14960 96 SRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTL 174 (702)
T ss_pred ccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeec
Confidence 001111111 11111 12566799999997663 46667666655556778888776532 2111 233347999
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
++++.++..+.+.+.+... ......+.+..|++.++|.+..+.-
T Consensus 175 kpLs~eEI~k~L~~Il~kE--gI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 175 RPLAVDEITKHLGAILEKE--QIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred cCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999998776332 2234456778899999998755443
No 76
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=2.3e-07 Score=103.26 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=62.0
Q ss_pred CcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccC
Q 004686 425 LKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 503 (737)
Q Consensus 425 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 503 (737)
++.|+|++|.+....|. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45556665555544432 55566666666666665556666666666666666666666666666666666666666666
Q ss_pred CCCCcccCcccCCC-CcccEEEccCcc
Q 004686 504 CLKLEKLPQDLGEV-ECLEELDVGGTA 529 (737)
Q Consensus 504 ~~~~~~~~~~l~~l-~~L~~L~l~~~~ 529 (737)
|.+.+.+|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66666666555442 344555555553
No 77
>PRK04195 replication factor C large subunit; Provisional
Probab=98.47 E-value=2.3e-06 Score=92.56 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=99.3
Q ss_pred hhhHHhhhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 2 ~~l~~~l~~~--~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
+++..|+... ....+.+.|+|++|+|||++|+.+++.+. ++ ++.+. .+.... .+.+++++.......
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~r~-~~~i~~~i~~~~~~~--- 92 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQRT-ADVIERVAGEAATSG--- 92 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----cccccc-HHHHHHHHHHhhccC---
Confidence 4566666631 11267999999999999999999999762 22 22222 222222 122333333311110
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCChH------HHHHHhcCCCCCCCCcEEEEEeCCc-hhhh-h-cCcccEEEcC
Q 004686 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDE-HVLK-S-HGVTNTYKVR 150 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~------~~~~l~~~l~~~~~~~~iliTtR~~-~~~~-~-~~~~~~~~l~ 150 (737)
.....++-+||+|+++... .+.++...+. ..+..||+|+.+. .... . ......++++
T Consensus 93 ------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~ 158 (482)
T PRK04195 93 ------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFK 158 (482)
T ss_pred ------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEec
Confidence 0011367899999997652 2444444333 2344466665442 1111 1 1234478999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
+++.++....+.+.+.... ....++..+.|++.++|....+......+
T Consensus 159 ~~~~~~i~~~L~~i~~~eg--i~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEG--IECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999887763322 22345678899999999876665444333
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.3e-06 Score=87.85 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=97.4
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc--ccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
|..++..+ .-...+.++|++|+||||+|+.++..+.. .+....+.+ .+-..+....-..+..-......
T Consensus 26 L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C--------~sc~~i~~~~h~dv~el~~~~~~ 96 (504)
T PRK14963 26 LLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC--------ESCLAVRRGAHPDVLEIDAASNN 96 (504)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC--------hhhHHHhcCCCCceEEecccccC
Confidence 34444432 22357799999999999999999997642 121112211 00000000000000000000000
Q ss_pred chhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhhc-CcccEEEcCCC
Q 004686 82 DVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTYKVRGL 152 (737)
Q Consensus 82 ~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l 152 (737)
..+. +..+.+.+ .+++-++|+|+++.. ..++.++..+........+|+++.. ..+.... +....+++.++
T Consensus 97 ~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~l 175 (504)
T PRK14963 97 SVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175 (504)
T ss_pred CHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCC
Confidence 1111 11222222 245679999999765 3477777666544455566655543 2222222 22347899999
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
+.++..+.+.+.+.... ....++.++.|++.++|.+.-+.
T Consensus 176 s~~el~~~L~~i~~~eg--i~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEG--REAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999988763322 22345678889999999986554
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.5e-09 Score=99.12 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=97.8
Q ss_pred CCcEEeccCccccc-cccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc--CcccCCCCcccEE
Q 004686 447 NLERLNLEGCTRLL-EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL--PQDLGEVECLEEL 523 (737)
Q Consensus 447 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L 523 (737)
.|++||+++..+.. .+-..+..|.+|+.|.+.++.+...+...+..-.+|+.|+++.|+-.+.. ...+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666644321 22234566777777777776666666666677777777777776544322 2235567777777
Q ss_pred EccCccCc--ccCccccc-CCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCC-CCCCCCCcEEeccCCC
Q 004686 524 DVGGTAIR--QIPPSIVQ-LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCN 599 (737)
Q Consensus 524 ~l~~~~~~--~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 599 (737)
+++++.+. .+...+.+ -++|..|+++|+.-.... ..+.. ...|++|.+|++++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---------------------sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---------------------SHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---------------------hHHHHHHHhCCceeeecccccc
Confidence 77777654 11111222 246667777665411100 00011 2346667777777666
Q ss_pred CCCCCccccccCCCCCCeEeCCCCCCcccch---hhhcCCCCCEEccccC
Q 004686 600 LLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS---SINQLLKLKILCLEKC 646 (737)
Q Consensus 600 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~---~l~~l~~L~~L~l~~n 646 (737)
.++......+..++.|++|.++.|..- +|. .+.+.|+|.+|++-+|
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 555545555556666666666666421 122 2355566666666655
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.7e-06 Score=89.96 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=100.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCc-eEEEeecchhhcccChHHHHHHHHHHHhhcc----c
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMER----D 77 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~ 77 (737)
.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...-.. ..-+. ...|..+. .++.|...-..+. .
T Consensus 27 ~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~----sC~~I~aG~hpDviEIdA 100 (700)
T PRK12323 27 ALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCR----ACTEIDAGRFVDYIEMDA 100 (700)
T ss_pred HHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccH----HHHHHHcCCCCcceEecc
Confidence 344445433 224678999999999999999999976421000 00000 00011111 1111111100000 0
Q ss_pred ccccchhhhHHHHHHH----hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEc
Q 004686 78 LIIWDVHKGINLIRWR----LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKV 149 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~----l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l 149 (737)
.....+++..+.+... ..++.-++|||+++... ..+.++..+-.-..+.++|++|.+. .+... .+....+.+
T Consensus 101 as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f 180 (700)
T PRK12323 101 ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 (700)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhccc
Confidence 0001112211111111 13566799999997764 4777777665545677777666653 23221 122347899
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+.++.++..+.+.+.+..+ ......+.++.|++.++|.|.....+
T Consensus 181 ~~ls~eei~~~L~~Il~~E--gi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 181 KQMPPGHIVSHLDAILGEE--GIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988765322 12233456788999999998655433
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=6.3e-06 Score=84.90 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=95.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
.+..++..+ ..+.+.++|++|+|||++++.++.+.... +.. .++... .+...... ..++.+........
T Consensus 28 ~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~--~~~~~~~~-~~~~~i~~~~~~~~---- 97 (319)
T PRK00440 28 RLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELN--ASDERGID-VIRNKIKEFARTAP---- 97 (319)
T ss_pred HHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEec--cccccchH-HHHHHHHHHHhcCC----
Confidence 445555442 33457999999999999999999975332 221 122100 11111111 11122222111000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhH
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
.....+-++++|+++... ....+...+......+.+|+++... ..... ......+++.++++++.
T Consensus 98 -----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 98 -----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred -----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 001235689999987553 2444444443334556777766432 11111 12233689999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+++...+.... ....++.++.+++.++|.+.-+...
T Consensus 167 ~~~l~~~~~~~~--~~i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 167 AERLRYIAENEG--IEITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999988764322 2234567888999999998664443
No 82
>PF14516 AAA_35: AAA-like domain
Probab=98.39 E-value=5.6e-05 Score=77.27 Aligned_cols=259 Identities=15% Similarity=0.124 Sum_probs=133.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecch-hhcccChHHHHHHHHHHHhhcccccc----------cchh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE-VSVTRGLVPLQEQLLSEVLMERDLII----------WDVH 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~----------~~~~ 84 (737)
..+.|.|+-.+|||++..++.+..++.--.++++..... .....+..+..+.++..+.....-.. ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 489999999999999999999877654333455552211 11123444444444444332221100 0111
Q ss_pred hhHHHHHHH-h--cCCeEEEEEcCCCChHH----HHHHhcCCC---CCC-----CCcEEEEEeCCch---hhh----hcC
Q 004686 85 KGINLIRWR-L--CRKRVLVILDDVDQLEQ----LQALVGNHD---WFG-----FGSRIIITSRDEH---VLK----SHG 142 (737)
Q Consensus 85 ~~~~~l~~~-l--~~~~~LlilDd~~~~~~----~~~l~~~l~---~~~-----~~~~iliTtR~~~---~~~----~~~ 142 (737)
.....+.+. + .+++.+|++|+++..-+ .+.|...++ ... ...-.++...+.+ ... ...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 112223332 2 25899999999975532 122322221 111 1222223333221 111 122
Q ss_pred cccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcCCchh
Q 004686 143 VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPNEK 222 (737)
Q Consensus 143 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (737)
....+++++|+.+|..+|+.+.... ......++|...++|+|..+..++..+..... ...+.++...... ..
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~~-~~~~l~~~a~~~~-~~ 263 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYLLVEEQI-TLEQLLEEAITDN-GI 263 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHHHHHccC-cHHHHHHHHHHhc-cc
Confidence 3347899999999999998875311 12233889999999999999999998865211 1222222211110 11
Q ss_pred HHHHHHhhhcCCC--hhhHhhhheeecccCCCCHHHHHHhhhcCCC--CchhhHHHHhhcccceeecCEEeHh-HHHHHH
Q 004686 223 VLKVLRISYDGLD--RRDKEIFLDIACFFKGKDEDRVRKKLDSCGF--NSDIGIRELLDKSLITIVNNKLWMH-DLLQEM 297 (737)
Q Consensus 223 ~~~~~~~s~~~L~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~~~l~~L~~~~l~~~~~~~~~~h-~l~~~~ 297 (737)
....++.-+..|. +..++. +..++.+... ........|...|++...++.+... ++.+.+
T Consensus 264 ~~~hL~~l~~~L~~~~~L~~~---------------~~~il~~~~~~~~~~~~~~~L~~~GLV~~~~~~~~~~n~iY~~y 328 (331)
T PF14516_consen 264 YNDHLDRLLDRLQQNPELLEA---------------YQQILFSGEPVDLDSDDIYKLESLGLVKRDGNQLEVRNPIYRQY 328 (331)
T ss_pred HHHHHHHHHHHHccCHHHHHH---------------HHHHHhCCCCcccChHHHHHHHHCCeEEEeCCEEEEEcHHHHHH
Confidence 1222333233331 111221 2222222111 1234578899999999997776654 555544
No 83
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.3e-06 Score=87.93 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++... ..+.++..+-+.+....+|++|.+ ..+... .+....+++++++.++..+.+.+.+....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 567799999997653 466777666655566766655544 323222 22335789999999999988887653221
Q ss_pred ChHHHHHHHHHHHHhCCCchH
Q 004686 172 TDYRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~ 192 (737)
....++.++.|++.++|.+.-
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR~ 216 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLRD 216 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHHH
Confidence 233456677899999997753
No 84
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=6e-06 Score=87.54 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=96.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhccc-C-ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...++|+|++|+|||.|++.+++.+.+.+ . .++|+. . .++..++...+... . ...+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----~------~~f~~~~~~~~~~~------~----~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFLNDLVDSMKEG------K----LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----H------HHHHHHHHHHHhcc------c----HHHHHH
Confidence 44699999999999999999999876543 2 345554 1 23444444443211 1 223333
Q ss_pred HhcCCeEEEEEcCCCChH-------HHHHHhcCCCCCCCCcEEEEEeC-Cch--------hhhhcCcccEEEcCCCChhh
Q 004686 93 RLCRKRVLVILDDVDQLE-------QLQALVGNHDWFGFGSRIIITSR-DEH--------VLKSHGVTNTYKVRGLDYVE 156 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~-------~~~~l~~~l~~~~~~~~iliTtR-~~~--------~~~~~~~~~~~~l~~l~~~~ 156 (737)
.+..+.-+|++||++... ++-.+...+. ..+..+|+||. ++. +...+.....+++++.+.+.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 333445689999997431 1222221111 23456888875 321 11122334478999999999
Q ss_pred HHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
..+++++.+... .....++..+.|++.+.|.-..+.-+.
T Consensus 268 r~~IL~~~~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 268 RKKIARKMLEIE--HGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHhccccCHHHHHHHH
Confidence 999999887432 223445778889999888766555443
No 85
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.8e-06 Score=83.74 Aligned_cols=165 Identities=17% Similarity=0.214 Sum_probs=99.0
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh------cccCceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK------DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
.|..++..+ .-.....++|+.|+|||++|+.++..+. .+.|...|... -...-.+.+ ++++...+....
T Consensus 15 ~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~-ir~~~~~~~~~p 89 (313)
T PRK05564 15 RIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDD-IRNIIEEVNKKP 89 (313)
T ss_pred HHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHH-HHHHHHHHhcCc
Confidence 344455432 3346889999999999999999999653 22333233220 001111222 222222211100
Q ss_pred cccccchhhhHHHHHHHhcCCeEEEEEcCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCchhh-hh-cCcccEEEcCCC
Q 004686 77 DLIIWDVHKGINLIRWRLCRKRVLVILDDVDQ--LEQLQALVGNHDWFGFGSRIIITSRDEHVL-KS-HGVTNTYKVRGL 152 (737)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~~-~~-~~~~~~~~l~~l 152 (737)
..+++-++|+|+++. ...+++++..+.+.+.++.+|++|.+.... .. .+....+++.++
T Consensus 90 -----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~ 152 (313)
T PRK05564 90 -----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRL 152 (313)
T ss_pred -----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCc
Confidence 114556777777654 455888888887777888888888764321 11 122347899999
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
++++..+.+.+...+ ...+.++.++..++|.|.-+..
T Consensus 153 ~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 153 SKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 999999988765421 1234467788999998865543
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=8.6e-06 Score=86.83 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=95.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccC--c-eEEEeecchhhcccChHHHHHHHHHHHhhccc----ccccchhhhH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--A-SSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKGI 87 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 87 (737)
...+.++|+.|+||||+|+.++..+..... . ..+.. |..+.+ +..+......+.. ......++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~----C~~i~~~~h~Dv~eidaas~~~vd~Ir 114 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTN----CISFNNHNHPDIIEIDAASKTSVDDIR 114 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChH----HHHHhcCCCCcEEEeeccCCCCHHHHH
Confidence 468999999999999999999997632110 0 01111 111111 1111111000000 0000111111
Q ss_pred HHHHHH-----hcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC-Cchhhhhc-CcccEEEcCCCChhhHH
Q 004686 88 NLIRWR-----LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSR-DEHVLKSH-GVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 88 ~~l~~~-----l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR-~~~~~~~~-~~~~~~~l~~l~~~~~~ 158 (737)
+ +.+. ..+++-++|+|+++.. ..+++++..+...+....+|++|. ...+.... .....+++++++.++..
T Consensus 115 ~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~ 193 (507)
T PRK06645 115 R-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIF 193 (507)
T ss_pred H-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHH
Confidence 1 1111 2356779999999765 347777766665556667665554 33333322 22347899999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
+++.+.+.... ....++.++.|++.++|.+..+.
T Consensus 194 ~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 194 KLLEYITKQEN--LKTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99998874322 22345667889999999875543
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=86.28 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=98.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhc----ccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME----RDL 78 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----~~~ 78 (737)
.|..++..+ .-...+.++|+.|+||||+|+.++..+-..-... ..+|..+. .++.|...-..+ ...
T Consensus 27 ~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C~----~C~~i~~g~~~d~~eidaa 96 (509)
T PRK14958 27 ALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-----ANPCNDCE----NCREIDEGRFPDLFEVDAA 96 (509)
T ss_pred HHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----cccCCCCH----HHHHHhcCCCceEEEEccc
Confidence 344555442 2245789999999999999999999653211000 00111111 111111110000 000
Q ss_pred cccchhhhHHHHHHH-----hcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWR-----LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~-----l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l 149 (737)
....+++.. .+.+. ..++.-++|+|+++.. ...++++..+-..+...++|++|.+. .+... .+....+++
T Consensus 97 s~~~v~~iR-~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f 175 (509)
T PRK14958 97 SRTKVEDTR-ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHL 175 (509)
T ss_pred ccCCHHHHH-HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhc
Confidence 001111111 11111 1246679999999765 44677776665556677777766543 22211 122346889
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
++++.++..+.+.+.+.... ....++.++.|++.++|.+..+...
T Consensus 176 ~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 176 AQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999888777653322 2234456778999999988655433
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.34 E-value=9.1e-06 Score=86.14 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=94.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...++|+|++|+|||.|++.+++.+.+.. ..++|+. ..++..++...+... . ...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~------~----~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN------K----MEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC------C----HHHHHH
Confidence 45789999999999999999999876553 2345544 122333444443211 1 223333
Q ss_pred HhcCCeEEEEEcCCCChHH----HHHHhcCCCCC-CCCcEEEEEeCCch---------hhhhcCcccEEEcCCCChhhHH
Q 004686 93 RLCRKRVLVILDDVDQLEQ----LQALVGNHDWF-GFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~~----~~~l~~~l~~~-~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~~~~ 158 (737)
.+++ .-+|++||++.... -+.+...+... ..+..+|+|+.... +...+.....+++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3433 34888999964321 11122111100 23455777776421 1112223346899999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+++.+++... .....++.++.|++.+.|....+.-+
T Consensus 275 ~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 275 AILQKKAEEE--GLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 9999987432 23344577888999998887765544
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=4.2e-06 Score=90.75 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=98.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---c-c
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---D-L 78 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~-~ 78 (737)
.|..++..+ .-...+.++|+.|+||||+|+.++..+...-. ..+.. |..+. .++.+...-..+. + .
T Consensus 27 ~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~p----Cg~C~----sCr~i~~g~~~DvlEidaA 96 (709)
T PRK08691 27 ALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEP----CGVCQ----SCTQIDAGRYVDLLEIDAA 96 (709)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCC----CcccH----HHHHHhccCccceEEEecc
Confidence 344555542 22468899999999999999999986532110 00111 11111 0111111000000 0 0
Q ss_pred cccchhhhHHHHHHH-----hcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWR-----LCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~-----l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l 149 (737)
.....+. +..+.+. ..+++-++|||+++.... ...++..+-......++|++|.+. .+... .+....+++
T Consensus 97 s~~gVd~-IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f 175 (709)
T PRK08691 97 SNTGIDN-IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVL 175 (709)
T ss_pred ccCCHHH-HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhc
Confidence 0001111 1111111 125667999999976643 555555554445667777777653 22211 122236788
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
++++.++..+.+.+.+.... .....+.++.|++.++|.+..+...
T Consensus 176 ~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 176 RNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999988763322 2345567889999999998655444
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=4.1e-06 Score=89.90 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=95.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccC--ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
....++|+|++|+|||+|++.+++.+.+.+. .++|+. + .++..++...+... ....+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----~------~~~~~~~~~~~~~~----------~~~~~~ 206 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----S------EKFTNDFVNALRNN----------TMEEFK 206 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----H------HHHHHHHHHHHHcC----------cHHHHH
Confidence 3467999999999999999999998766542 244544 1 22233333332110 123333
Q ss_pred HHhcCCeEEEEEcCCCChH----HHHHHhcCCCC-CCCCcEEEEEeCCch---------hhhhcCcccEEEcCCCChhhH
Q 004686 92 WRLCRKRVLVILDDVDQLE----QLQALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~~----~~~~l~~~l~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~l~~~~~ 157 (737)
+.++ +.-+|++||++... ..+.+...+.. ...+..+++|+.... +...+.....+++++.+.++.
T Consensus 207 ~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 207 EKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred HHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 4443 34488999996431 11122221110 023445777776431 112233345789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+++++++.. ......++.++.|++.+.|....+.-+
T Consensus 286 ~~il~~~~~~--~~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 286 IAILKKKAEE--EGIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHHH--cCCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 9999998743 223345577889999999987765544
No 91
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=9.6e-08 Score=101.54 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEcc
Q 004686 423 KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLC 502 (737)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 502 (737)
..++.+.++.|.+......+..+.+|+.|++.+|.+.. +...+..+++|++|++++|.+ +.+.. +..++.|+.|++.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I-~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKI-TKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccc-ccccc-hhhccchhhheec
Confidence 34444444444333323334445555555555544322 111244555555555555432 22221 3444445555555
Q ss_pred CCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCCC
Q 004686 503 GCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCK 552 (737)
Q Consensus 503 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 552 (737)
+|.+.. ...+..+++|+.+++++|.+..+... ...+.+++.+.+.+|.
T Consensus 149 ~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 555432 12233455566666666665555432 3455556666665555
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.31 E-value=1.8e-05 Score=82.87 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.. ...+.++..+...+....+|++|.+.. +... .+....+++.++++++..+++.+.+....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-- 193 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-- 193 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 45568999999766 446666666644445666667765432 2221 12234788999999999999988763322
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
....++.+..+++.++|.|..+....
T Consensus 194 ~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 194 IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 22344678889999999987665544
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.31 E-value=8.9e-06 Score=78.92 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=92.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+.+.+||++|+||||||+.++..-+.+- ..||....--....+++.+.++--+. .
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq~~--------------------~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQAQNE--------------------K 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHHHHHH--------------------H
Confidence 4567899999999999999999999765542 34554222222223333333322222 2
Q ss_pred HhcCCeEEEEEcCCC--ChHHHHHHhcCCCCCCCCcEEE--EEeCCchhh---hhcCcccEEEcCCCChhhHHHHHhhhc
Q 004686 93 RLCRKRVLVILDDVD--QLEQLQALVGNHDWFGFGSRII--ITSRDEHVL---KSHGVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 93 ~l~~~~~LlilDd~~--~~~~~~~l~~~l~~~~~~~~il--iTtR~~~~~---~~~~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
.+..+|.++.+|++. +..+-+-|++- ..+|..++ -||.++... .....-.++.+++|+.++...++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 345788999999984 33334444433 34666555 466665321 112333478899999999999998743
Q ss_pred c---CCCC---CC-----hHHHHHHHHHHHHhCCCch
Q 004686 166 S---NGKQ---PT-----DYRVELSKYVVNYAGGLPL 191 (737)
Q Consensus 166 ~---~~~~---~~-----~~~~~~~~~i~~~~~G~Pl 191 (737)
. +... .. .......+.++..|+|-..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 1111 11 2345566777778888654
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.7e-05 Score=82.15 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=89.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----cccccchhhhHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----DLIIWDVHKGINL 89 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 89 (737)
...+.++||+|+|||++|+.++..+-..... .- .|..+. .++.+......+. +......++ +..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~----~Cg~C~----~C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~ 104 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPD--EP----GCGECR----ACRTVLAGTHPDVRVVAPEGLSIGVDE-VRE 104 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CC----CCCCCH----HHHHHhcCCCCCEEEeccccccCCHHH-HHH
Confidence 5679999999999999999999865332110 00 011111 1111111000000 000001111 112
Q ss_pred HHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHH
Q 004686 90 IRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQL 160 (737)
Q Consensus 90 l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l 160 (737)
+.+.. .+++-++|+|+++... ....++..+-.-+.+..+|++|.+. .+... .+....+.+++++.++..+.
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~ 184 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEV 184 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHH
Confidence 22222 2455688999997764 3455555554445567677666653 33322 22234789999999999999
Q ss_pred HhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+.+.. + ...+.+..+++.++|.|.....+
T Consensus 185 L~~~~--~-----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 185 LVRRD--G-----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHhc--C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 87543 1 11355677899999998654433
No 95
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=1.2e-05 Score=84.95 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=89.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
...++|+|+.|+|||+|++.+++.+.+....++|+. ..++..++...+... ..+.+.+.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~----------~~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG----------EMQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc----------hHHHHHHHc
Confidence 357899999999999999999998765444456654 122333343332110 122334444
Q ss_pred cCCeEEEEEcCCCChHH----HHHHhcCCCC-CCCCcEEEEEeCCc---------hhhhhcCcccEEEcCCCChhhHHHH
Q 004686 95 CRKRVLVILDDVDQLEQ----LQALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQL 160 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~~----~~~l~~~l~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~~~~~l 160 (737)
. +.-++++||++.... .+.+...+.. ...|..||+||... ++...+.....+++.+++.++..++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 345888899854321 1111111100 02355688887542 1122233345789999999999999
Q ss_pred HhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.+++... .....++..+.|+..+.|.-
T Consensus 280 L~~k~~~~--~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEAL--SIRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhcCCCH
Confidence 99887332 23344566777877777654
No 96
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.31 E-value=4.4e-06 Score=82.64 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
+...-+.++|++|+|||++|+.++..+...- ....++. +.. .++...... +.......+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~----~~l~~~~~g-----------~~~~~~~~~ 100 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER----ADLVGEYIG-----------HTAQKTREV 100 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH----HHhhhhhcc-----------chHHHHHHH
Confidence 4457789999999999999999998653211 1112222 111 111111110 001111222
Q ss_pred HHHhcCCeEEEEEcCCCCh----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhh------h--cCcccEEEcCCC
Q 004686 91 RWRLCRKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK------S--HGVTNTYKVRGL 152 (737)
Q Consensus 91 ~~~l~~~~~LlilDd~~~~----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~--~~~~~~~~l~~l 152 (737)
.+... .-+|++|+++.. +..+.+.....+......+++++....... . .+....++++++
T Consensus 101 ~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~ 178 (261)
T TIGR02881 101 IKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDY 178 (261)
T ss_pred HHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCC
Confidence 22222 348999999752 234555554433333345556655432211 1 122346889999
Q ss_pred ChhhHHHHHhhhcc
Q 004686 153 DYVEALQLFHLKVS 166 (737)
Q Consensus 153 ~~~~~~~l~~~~~~ 166 (737)
+.++..+++.+.+.
T Consensus 179 ~~~el~~Il~~~~~ 192 (261)
T TIGR02881 179 TVEELMEIAERMVK 192 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.4e-05 Score=82.73 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=94.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc----cccchhhhHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL----IIWDVHKGINLI 90 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 90 (737)
...+.++|+.|+||||+|+.++..+....... ..+|..+. .++.|......+... .....++ +..+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-----~~pCg~C~----~C~~i~~~~~~Dv~eidaas~~~vdd-IR~I 104 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPT-----SDPCGTCH----NCISIKNSNHPDVIEIDAASNTSVDD-IKVI 104 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCC-----CCCccccH----HHHHHhccCCCCEEEEecccCCCHHH-HHHH
Confidence 45899999999999999999998653211100 00011111 111121110000000 0001111 1111
Q ss_pred HHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHH
Q 004686 91 RWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+.. .+++-++|+|+++... ..++++..+-+.++..++|++|.. ..+... ......+++++++.++..+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L 184 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHL 184 (491)
T ss_pred HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHH
Confidence 1111 2466799999996553 466776666555677777776654 233222 223347899999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
.+.+... .....++.++.|++.++|.+..+.
T Consensus 185 ~~ia~~E--gi~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 185 VDIAKKE--NIEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 8876332 223455677889999999886443
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=8.6e-06 Score=88.81 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---ccc-ccchhhhHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DLI-IWDVHKGINLI 90 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~~l 90 (737)
...+.++|+.|+||||+|+.++..+..... .. ...|..+ ..++++...-..+. +.. ...+++. ..+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-~~pCg~C----~~C~~i~~g~~~D~ieidaas~~~Vddi-R~l 107 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-ATPCGEC----DNCREIEQGRFVDLIEIDAASRTKVEDT-REL 107 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-CCCCCCC----HHHHHHHcCCCCCceeecccccCCHHHH-HHH
Confidence 356899999999999999999996543210 00 0012111 22222221100000 000 0011111 111
Q ss_pred HHH-----hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHH
Q 004686 91 RWR-----LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~-----l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+. ..+++-++|||+++... ..++++..+-.-+...++|++|.+. .+... .+....+.+++++.++..+++
T Consensus 108 i~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L 187 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQL 187 (647)
T ss_pred HHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHH
Confidence 111 23567799999997664 4666666554445666666666553 33221 222357999999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+.+... ......+....|++.++|.+..+..+
T Consensus 188 ~~il~~e--~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 188 EHILQAE--QIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8765222 12234456778999999988655444
No 99
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.30 E-value=8e-06 Score=73.37 Aligned_cols=105 Identities=20% Similarity=0.132 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+.+.|+|++|+|||+++++++..+.+....++++. +............+... .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN----ASDLLEGLVVAELFGHF-------------LVRLLFELA 80 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe----hhhhhhhhHHHHHhhhh-------------hHhHHHHhh
Confidence 3468999999999999999999997754334455554 22111111111000000 001111222
Q ss_pred hcCCeEEEEEcCCCCh-----HHHHHHhcCCCCC---CCCcEEEEEeCCc
Q 004686 94 LCRKRVLVILDDVDQL-----EQLQALVGNHDWF---GFGSRIIITSRDE 135 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-----~~~~~l~~~l~~~---~~~~~iliTtR~~ 135 (737)
...++.++|+||++.. ..+.......... ..+..+|+||...
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3456789999999864 2233333333322 3577888888864
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.8e-05 Score=84.72 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=101.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc----CceEEEeecchhhcccChHHHHHHHHHHHhhcc--
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF----EASSFLANVREVSVTRGLVPLQEQLLSEVLMER-- 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-- 76 (737)
.|..++..+ .-...+.++|+.|+||||+|+.++..+...- .....- .|..+ ..++.|...-..+.
T Consensus 27 ~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C----~~C~~i~~g~h~D~~e 97 (618)
T PRK14951 27 ALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVC----QACRDIDSGRFVDYTE 97 (618)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCcc----HHHHHHHcCCCCceee
Confidence 344444443 2346789999999999999999998653210 110010 12211 22222211100000
Q ss_pred -c-ccccchhhhHHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhh-hcCccc
Q 004686 77 -D-LIIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLK-SHGVTN 145 (737)
Q Consensus 77 -~-~~~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~-~~~~~~ 145 (737)
+ .....+++. ..+.+.. .++.-++|||+++... .++.++..+-+.....++|++|.+ ..+.. ..+...
T Consensus 98 ldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~ 176 (618)
T PRK14951 98 LDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCL 176 (618)
T ss_pred cCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhce
Confidence 0 000111111 1122221 2355699999997664 477777776655667777766654 22222 122335
Q ss_pred EEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 146 TYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 146 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.++++++++++..+.+.+.+.... .....+.++.|++.++|.+..+...
T Consensus 177 ~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 799999999999999987763322 2234466788999999987555443
No 101
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.28 E-value=4.8e-05 Score=71.03 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=105.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHH----H
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN----L 89 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~ 89 (737)
+-+++.|+|+-|.|||.++|.+..-+.+.--.++++ .....+...+.+.+...+.... ......... .
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i-----~~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~ 121 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI-----DKPTLSDATLLEAIVADLESQP---KVNVNAVLEQIDRE 121 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe-----cCcchhHHHHHHHHHHHhccCc---cchhHHHHHHHHHH
Confidence 346999999999999999995554443322222333 3344566677788887765521 122222222 2
Q ss_pred HHHHh-cCCe-EEEEEcCCCChH--HHHHHh--cCCC-CCCCCcEEEEEeCCchhh-------hh--cCcccEEEcCCCC
Q 004686 90 IRWRL-CRKR-VLVILDDVDQLE--QLQALV--GNHD-WFGFGSRIIITSRDEHVL-------KS--HGVTNTYKVRGLD 153 (737)
Q Consensus 90 l~~~l-~~~~-~LlilDd~~~~~--~~~~l~--~~l~-~~~~~~~iliTtR~~~~~-------~~--~~~~~~~~l~~l~ 153 (737)
+.+.. +++| ..+++|++.+.. .++.+. ..+. +....-+|+..-.++-.. .. -+..-.+++.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 22222 3566 999999985542 233332 2222 222223455555542111 01 1233348999999
Q ss_pred hhhHHHHHhhhccCCCCCC-hHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004686 154 YVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAIEVLGSF 199 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i~~~a~~ 199 (737)
+++...|++.+..+..... -...+....|.....|+|.+|..++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999875443333 235566778999999999999877653
No 102
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.6e-07 Score=85.98 Aligned_cols=229 Identities=19% Similarity=0.172 Sum_probs=136.5
Q ss_pred CCCCcEEecCCCcCCCCCC--CC-CCCCCCcEEeccCccccc--cccccccCccccceeccccccccccCccccCCCCCc
Q 004686 422 LKELKFMNLSHSCNLIRTP--DF-TGVPNLERLNLEGCTRLL--EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSL 496 (737)
Q Consensus 422 l~~L~~L~l~~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 496 (737)
.+-++.+.+.++.+....- .+ ..++.++.||+.+|.+.. .+...+.+||.|+.|+++.|++...+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3445555555554432221 12 346778888888876542 233446778888888888887655443322355678
Q ss_pred cEEEccCCCCCc-ccCcccCCCCcccEEEccCccCcccC--c-cccc-CCCCcEEEccCCCCCCCcCccchhhhcccCCC
Q 004686 497 KILCLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIP--P-SIVQ-LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (737)
Q Consensus 497 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~--~-~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (737)
+.|.|.+..+.- ...+.+..+|.+++|.++.|.+..+- + .... -+.++.+....|....-
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--------------- 188 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--------------- 188 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH---------------
Confidence 888887755432 23344566777788877777544221 1 1111 12444444444431000
Q ss_pred CCCCCccccCCC-CCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch--hhhcCCCCCEEccccCcc
Q 004686 572 KNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRN 648 (737)
Q Consensus 572 ~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~ 648 (737)
..... -.-+|++..+.+..|++-+..-......++.+.-|+|+.+++.+... .+..++.|..|.++++++
T Consensus 189 -------~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 189 -------LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred -------HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 00001 12368888888888876554445556677888889999998874442 678899999999999998
Q ss_pred CCCCCCCCCccceeeccccccccccc
Q 004686 649 LKSLPELPPEIVFVGAEDCTSLETIS 674 (737)
Q Consensus 649 ~~~~~~l~~~L~~l~l~~c~~L~~l~ 674 (737)
...+.. -.=++|-|..+++++.|.
T Consensus 262 ~d~l~~--~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 262 SDPLRG--GERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccccC--CcceEEEEeeccceEEec
Confidence 766543 223445556666666653
No 103
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1.1e-06 Score=64.82 Aligned_cols=58 Identities=24% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCC
Q 004686 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC 504 (737)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 504 (737)
+|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444332222234444444444444444433333333444444444444443
No 104
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.7e-05 Score=82.83 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhhc-CcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++... ..+.++..+...+....+|++|.+ ..+.... .....+++.+++.++....+.+.+... .
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e--g 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE--G 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc--C
Confidence 466799999997653 356666655433444555545443 3332222 233478999999999999998876332 2
Q ss_pred ChHHHHHHHHHHHHhCCCc-hHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLP-LAIEVL 196 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~P-l~i~~~ 196 (737)
....++.++.|++.++|.. .++..+
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~L 219 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTML 219 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2344566788888887754 444444
No 105
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=9.4e-05 Score=76.10 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=62.7
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++... ...+++..+..-..+..+|++|.... +... .+....+.+.+++.++..+.+.+.... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-
Confidence 466799999997664 35566555544455667777777643 2222 233447999999999999999875411 1
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
..+....+++.++|.|.....+
T Consensus 217 ---~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 ---PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1122367889999999866544
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.4e-05 Score=81.56 Aligned_cols=170 Identities=18% Similarity=0.142 Sum_probs=94.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc----cCceEEEeecchhhcccChHHHHHHHHHHHhhcc-------cc-----
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-------DL----- 78 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-------~~----- 78 (737)
...+.++|+.|+||||+|+.++..+-.+ +...... ..+.-...++.+...-..+. +.
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~ 117 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKF 117 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCHHHHHHHcCCCCCEEEeecccccccccc
Confidence 4579999999999999999999976432 1111100 01111112333322211000 00
Q ss_pred -cccchhhhHHHHHHHhc-----CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeC-Cchhhhhc-CcccEEE
Q 004686 79 -IIWDVHKGINLIRWRLC-----RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSR-DEHVLKSH-GVTNTYK 148 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~l~-----~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR-~~~~~~~~-~~~~~~~ 148 (737)
....+++ +..+.+++. +++-++|+|+++.... .++++..+..-+....+|++|. ...+.... +....++
T Consensus 118 ~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~ 196 (351)
T PRK09112 118 KTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPIS 196 (351)
T ss_pred cccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEE
Confidence 0001122 223334432 4667999999976643 5555555543344555555454 33332221 2234899
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+.+++.++..+++.+..... . ..++.+..+++.++|.|.....+
T Consensus 197 l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 197 LKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998743111 1 33455778999999999766544
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.22 E-value=2.6e-05 Score=74.38 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=99.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh--cccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
...+..+++||+|.|||+.|+.++.++- +-|..++--.+ .+...... +.++=.+. .+.+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGis-vvr~Kik~---------------fakl 115 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGIS-VVREKIKN---------------FAKL 115 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---cccccccc-chhhhhcC---------------HHHH
Confidence 4678999999999999999999999753 33444433221 11111111 11100000 0000
Q ss_pred HHHh------cCCe-EEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHH
Q 004686 91 RWRL------CRKR-VLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQ 159 (737)
Q Consensus 91 ~~~l------~~~~-~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~ 159 (737)
.-.. ..++ -+||||+++.+ +.|.++....-+.....++++.+-. ..+... .+.-..+..+++.+++..+
T Consensus 116 ~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~ 195 (346)
T KOG0989|consen 116 TVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVD 195 (346)
T ss_pred hhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHH
Confidence 0000 0123 48999999877 4588888877665666676655554 222221 1222257889999999999
Q ss_pred HHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
-++.-+ ..+..+.+.+..+.|++.++|--.-.+++-..+
T Consensus 196 rL~~Ia--~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 196 RLEKIA--SKEGVDIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred HHHHHH--HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 888777 334445666788999999999655444443333
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=1.8e-05 Score=82.52 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=83.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+-+.++|++|+|||++|+.++......| +. +. ..++....... .......+.+..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~----v~----~~~l~~~~~g~-----------~~~~i~~~f~~a 211 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATF-----IR----VV----GSELVRKYIGE-----------GARLVREIFELA 211 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCE-----Ee----cc----hHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 45699999999999999999999765443 21 10 01111111111 111122222222
Q ss_pred -cCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCch-----hhhhcCcccEEEcC
Q 004686 95 -CRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEH-----VLKSHGVTNTYKVR 150 (737)
Q Consensus 95 -~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~ 150 (737)
...+.+|++|+++... .+..++..+.. ...+..||.||.... +....+.+..++++
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 2467899999986541 13333322221 124567777777532 22222345578999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
..+.++..++|............ .....+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 99999999999877633221111 12456777777654
No 109
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.5e-06 Score=64.03 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=32.0
Q ss_pred ccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCcc
Q 004686 471 RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (737)
Q Consensus 471 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 529 (737)
+|++|++++|.+....+..+..+++|++|++++|.+...-+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666654433333445555666666666555544444455555666666655554
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.7e-05 Score=83.47 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=100.5
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc--cCceEEEee-cchhhcccChHHHHHHHHHHHhhcc---c
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLAN-VREVSVTRGLVPLQEQLLSEVLMER---D 77 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~--f~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~---~ 77 (737)
|..++..+ .-...+.++||.|+||||+|+.++..+... +....|... ...|..+. .++++........ +
T Consensus 28 L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~----~c~~~~~~~~~n~~~~~ 102 (397)
T PRK14955 28 IQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE----SCRDFDAGTSLNISEFD 102 (397)
T ss_pred HHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH----HHHHHhcCCCCCeEeec
Confidence 44444433 223568899999999999999999976421 111111110 00122111 1222221100000 0
Q ss_pred c-cccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhhc-CcccEE
Q 004686 78 L-IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTY 147 (737)
Q Consensus 78 ~-~~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~~-~~~~~~ 147 (737)
. .....++ +..+.+.+ .+++-++|+|+++.. ..++.++..+.+..+...+|++|.. ..+.... .....+
T Consensus 103 ~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v 181 (397)
T PRK14955 103 AASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRF 181 (397)
T ss_pred ccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHh
Confidence 0 0001111 22223333 245678999999755 3577777666555566666665543 3332221 223368
Q ss_pred EcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 148 KVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 148 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
++.++++++..+.+...+... .....++.++.+++.++|.+..+..
T Consensus 182 ~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 182 NFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999998776322 2234557788999999998865444
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=1.5e-05 Score=88.92 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=88.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+.+.++|++|+||||+|+.+++.....|. .+. .. ...+.++ +++. ....+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln----a~-~~~i~di-r~~i------------------~~a~~~ 103 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN----AV-LAGVKDL-RAEV------------------DRAKER 103 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh----hh-hhhhHHH-HHHH------------------HHHHHH
Confidence 4457899999999999999999997655441 221 10 0111111 1111 111111
Q ss_pred h--cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEE--eCCch--hhhh-cCcccEEEcCCCChhhHHHHHhhh
Q 004686 94 L--CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIIT--SRDEH--VLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (737)
Q Consensus 94 l--~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliT--tR~~~--~~~~-~~~~~~~~l~~l~~~~~~~l~~~~ 164 (737)
+ .+++.++|+|+++.. ...+.++..+ ..+..++++ |++.. +... .+....+++++++.++..+++.+.
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 1 246789999999754 3455665543 235555543 33321 1111 122346899999999999999876
Q ss_pred ccC-----CCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 165 VSN-----GKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 165 ~~~-----~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
... +.......++..+.|++.+.|....+.-+
T Consensus 181 l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 181 LQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred HHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 531 11222345567788899998876544433
No 112
>PRK06620 hypothetical protein; Validated
Probab=98.21 E-value=1e-05 Score=76.75 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=82.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
+.+.|+|++|+|||+|++.+++... ..++. .. . . .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~----~~--~-~---~~-------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIK----DI--F-F---NE-------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcc----hh--h-h---ch-------------------------hHH-
Confidence 6799999999999999998776532 12221 00 0 0 00 011
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCchh-------hhhcCcccEEEcCCCChhhHHHHHhhhcc
Q 004686 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEHV-------LKSHGVTNTYKVRGLDYVEALQLFHLKVS 166 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~~~-------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 166 (737)
...-++++||++..++ +-.+.-.+. ..|..+++|++.... ...+....+++++++++++..+++.+.+.
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1224788999976543 222222222 246678888885321 11223344799999999999999988763
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 167 NGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.. .....++..+.|++++.|.-..+.-+
T Consensus 162 ~~--~l~l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 162 IS--SVTISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred Hc--CCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 21 22344577788888887776554433
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=1e-05 Score=86.91 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---cc-cccchhhhHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DL-IIWDVHKGINLI 90 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~-~~~~~~~~~~~l 90 (737)
...+.++|+.|+||||+|+.++..+...- |.. ...|..+. .++.+......+. +. .....++ +..+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~Cg~C~----sCr~i~~~~h~DiieIdaas~igVd~-IReI 107 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDCCNSCS----VCESINTNQSVDIVELDAASNNGVDE-IRNI 107 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCCCcccH----HHHHHHcCCCCceEEeccccccCHHH-HHHH
Confidence 46899999999999999999999763211 111 00121111 1222211100000 00 0001111 1111
Q ss_pred HHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHH
Q 004686 91 RWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+.. .+++-++|+|+++.. ..+.+++..+-..+....+|++|.. ..+... .+....+++.+++.++..+.+
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L 187 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELL 187 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHH
Confidence 1111 134457999999765 3466666655444456666655543 233221 222347899999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+.+.... ....++.++.+++.++|.+..+...
T Consensus 188 ~~il~keg--i~Is~eal~~La~lS~GdlR~Alnl 220 (605)
T PRK05896 188 KSIAKKEK--IKIEDNAIDKIADLADGSLRDGLSI 220 (605)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 88663322 1233456788999999977544333
No 114
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=6.7e-06 Score=83.64 Aligned_cols=74 Identities=23% Similarity=0.558 Sum_probs=39.9
Q ss_pred CCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEE
Q 004686 444 GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEEL 523 (737)
Q Consensus 444 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 523 (737)
.+.+++.|++++|. +..+|. --++|+.|.+++|.....+|..+ +.+|++|++++|.....+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 35667777777663 344441 12346667766665555555433 34666666666644333432 35555
Q ss_pred EccCcc
Q 004686 524 DVGGTA 529 (737)
Q Consensus 524 ~l~~~~ 529 (737)
++.++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 555444
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=3.3e-05 Score=83.10 Aligned_cols=156 Identities=12% Similarity=0.164 Sum_probs=94.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..++|+|..|+|||.|++.+++.+.+.+ ..++|+. ..++..++...+... ....+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----------cHHHHHHH
Confidence 4589999999999999999999776533 2345554 233333443332110 12233334
Q ss_pred hcCCeEEEEEcCCCChH-------HHHHHhcCCCCCCCCcEEEEEeCCc---------hhhhhcCcccEEEcCCCChhhH
Q 004686 94 LCRKRVLVILDDVDQLE-------QLQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------~~~~l~~~l~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~~~ 157 (737)
+.. -=+|||||++... .+-.+...+. ..+..||+||... .+...+.....+++.+.+++..
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 433 3478889995441 1222222222 2355688888753 1222334455789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+++++++... ......++++.|++++.+....+.-+
T Consensus 452 ~aIL~kka~~r--~l~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 452 IAILRKKAVQE--QLNAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 99999887432 23344577888888887765554443
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.5e-05 Score=81.61 Aligned_cols=176 Identities=19% Similarity=0.134 Sum_probs=96.7
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----cc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----DL 78 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~ 78 (737)
|..++..+ .-...+.++|+.|+||||+|+.++..+..... ...- .|..+.+ ++.+...-.... +.
T Consensus 25 L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~----pCg~C~~----C~~i~~~~~~~~dvieida 94 (584)
T PRK14952 25 LSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQG-PTAT----PCGVCES----CVALAPNGPGSIDVVELDA 94 (584)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CCCC----cccccHH----HHHhhcccCCCceEEEecc
Confidence 44444432 23457899999999999999999987642110 0000 1222211 222221100000 00
Q ss_pred -cccchhhhHHHHHHH-----hcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEE
Q 004686 79 -IIWDVHKGINLIRWR-----LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYK 148 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~-----l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~ 148 (737)
....+++ +..+.+. ..+++-++|+|+++.. ...++++..+-..+....+|++|.. ..+... .+....++
T Consensus 95 as~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~ 173 (584)
T PRK14952 95 ASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYP 173 (584)
T ss_pred ccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEE
Confidence 0001111 1111111 1246679999999655 4477777666655667776666644 333222 22345799
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchH
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 192 (737)
+++++.++..+.+.+.+.... .....+.+..|++..+|.+..
T Consensus 174 F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 999999999998887653322 223445677889999998753
No 117
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.16 E-value=2.6e-06 Score=82.23 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccc-----hhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD-----VHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~~ 89 (737)
..++|.|++|+||||+++++++... ++|+..+|+.... .+..++.++++++...+.....+.+.. .....+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~--er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID--ERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEcc--CCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999664 3688888877322 223578888888843333222221111 1122222
Q ss_pred HHHH-hcCCeEEEEEcCCCCh
Q 004686 90 IRWR-LCRKRVLVILDDVDQL 109 (737)
Q Consensus 90 l~~~-l~~~~~LlilDd~~~~ 109 (737)
.... -.+++.++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 2222 3479999999999654
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.8e-05 Score=85.42 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=96.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc---cc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---LI 79 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~~ 79 (737)
.|..++..+ .-...+.++||.|+|||++|+.++..+-..-....+-. |..+. .. .+...+ .+
T Consensus 29 ~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p----C~~C~-------~~---~~~~~Dvieid 93 (725)
T PRK07133 29 TLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP----CQECI-------EN---VNNSLDIIEMD 93 (725)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc----hhHHH-------Hh---hcCCCcEEEEe
Confidence 344445443 23467889999999999999999986532111000000 11100 00 000000 00
Q ss_pred c---cchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC-Cchhhhh-cCcccEE
Q 004686 80 I---WDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSR-DEHVLKS-HGVTNTY 147 (737)
Q Consensus 80 ~---~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR-~~~~~~~-~~~~~~~ 147 (737)
. ...++ +..+.+.+ .+++-++|+|+++.. ..+.+++..+-..+....+|++|. ...+... .+...++
T Consensus 94 aasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~i 172 (725)
T PRK07133 94 AASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRF 172 (725)
T ss_pred ccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeE
Confidence 0 00111 22222222 256679999999755 457777766554455666555554 3333322 2223479
Q ss_pred EcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 148 KVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 148 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
++.+++.++..+.+...+.... .....+.++.+++.++|.+.-+...
T Consensus 173 eF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 173 NFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred EccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999987653221 2233456778999999977544433
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.8e-05 Score=84.23 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=96.1
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhc----cccc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME----RDLI 79 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----~~~~ 79 (737)
|..++..+ .-...+.++|+.|+||||+|+.++..+..... ... .+|..+.. +.++...-..+ ....
T Consensus 28 L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~----~pcg~C~~----C~~i~~~~~~d~~ei~~~~ 97 (527)
T PRK14969 28 LTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTA----TPCGVCSA----CLEIDSGRFVDLIEVDAAS 97 (527)
T ss_pred HHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCC----CCCCCCHH----HHHHhcCCCCceeEeeccc
Confidence 34444432 22357789999999999999999987632211 000 01111111 11111100000 0000
Q ss_pred ccchhhhHHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcC
Q 004686 80 IWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVR 150 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~ 150 (737)
....++ +..+.+.. .+++-++|+|+++... ..++++..+-..+....+|++|.+. .+... .+....++++
T Consensus 98 ~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~ 176 (527)
T PRK14969 98 NTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (527)
T ss_pred cCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcC
Confidence 001111 11121211 2566799999998664 3666666665555666677666543 22211 1223478999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+++.++..+.+.+.+.... ....++.+..|++.++|.+..+..
T Consensus 177 ~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 177 QMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDALS 219 (527)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999998887663222 223445678899999998864433
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.4e-05 Score=84.26 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=97.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccC----ceEEEeecchhhcccChHHHHHHHHHHHhhccc----ccccchhhh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKG 86 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~ 86 (737)
...+.++|+.|+||||+|+.++..+..... ...+.. |..+. -++.+......+.. .....+++
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~----cg~c~----~C~~i~~g~h~Dv~e~~a~s~~gvd~- 116 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL----CGVGE----HCQAIMEGRHVDVLEMDAASHTGVDD- 116 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc----CcccH----HHHHHhcCCCCceEEecccccCCHHH-
Confidence 457899999999999999999997643221 011111 11111 12222221100000 00011112
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhH
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
+..+.+.+ .+++-++|+|+++... ..+.++..+-+...++.+|++|.. ..+... .+....+++++++.++.
T Consensus 117 IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el 196 (598)
T PRK09111 117 IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVL 196 (598)
T ss_pred HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHH
Confidence 11222222 2456689999997664 366666665554567777766643 222222 12234789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
.+.+.+.+... .....++.++.|++.++|.+..+....
T Consensus 197 ~~~L~~i~~ke--gi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 197 AAHLSRIAAKE--GVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99998876322 222344677889999999986654443
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.16 E-value=3e-05 Score=79.15 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=92.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
....++|+|+.|.|||.|++++.+...+......++. ++ ..+...+++..+.. ...+.+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~----se~f~~~~v~a~~~----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LT----SEDFTNDFVKALRD----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----cc----HHHHHHHHHHHHHh----------hhHHHHHHh
Confidence 4689999999999999999999998877766544443 21 22333334433211 224455555
Q ss_pred hcCCeEEEEEcCCCCh-------HHHHHHhcCCCCCCCCcEEEEEeCCc---------hhhhhcCcccEEEcCCCChhhH
Q 004686 94 LCRKRVLVILDDVDQL-------EQLQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-------~~~~~l~~~l~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~l~~~~~ 157 (737)
. .-=++++||++-. +.+-++.-.+. ..|-.||+|++.. ++...+...-.+++.+.+++..
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 5 3348889998432 22333333333 2344899999753 2223334455889999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
..++.+++.. ......++...-|+++....
T Consensus 250 ~aiL~kka~~--~~~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 250 LAILRKKAED--RGIEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHHHHh--cCCCCCHHHHHHHHHHhhcc
Confidence 9999987632 22223334555555554443
No 122
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=4.7e-08 Score=102.53 Aligned_cols=177 Identities=25% Similarity=0.186 Sum_probs=114.3
Q ss_pred hhhhhcCCCCceEEEcccccCCC--ccccccCcceeeeec----------CCCCCCCCCCCCCCCeeEEccCCccccccc
Q 004686 350 AKSFSTMSNLRLLEINNLYSSGN--LEYLSNNLRYLKWHE----------YPFNSLPVSFRPEKLFKLNLCNSRIKYLWK 417 (737)
Q Consensus 350 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~~~----------~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~ 417 (737)
+..+-.++.||+|.+.++.+... +-..-..|..|...+ -..-++...+...+|.+.+++.|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 45667888999999999877641 111111222222211 123345555566788888888888887777
Q ss_pred cccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccccccc-ccccCccccceeccccccccccCccccCCCCCc
Q 004686 418 GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSL 496 (737)
Q Consensus 418 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 496 (737)
++.-++.|+.|+|++|++.... .+..|++|++|||++|.+ ..+| -....|+ |+.|.+++|...+ +- ++.++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l~t-L~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNALTT-LR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeecccHHHh-hh-hHHhhhhh
Confidence 7777888888888888766544 566788888888888664 3444 2334444 8888888765432 22 36677888
Q ss_pred cEEEccCCCCCccc-CcccCCCCcccEEEccCccCc
Q 004686 497 KILCLCGCLKLEKL-PQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 497 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 531 (737)
+.||+++|-+.+.- ...++.+..|+.|.|.||.+.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888887665421 233556677888888887765
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=8.7e-05 Score=79.35 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhh-hcCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++... ..++++..+-..+....+|++|.+. .+.. .......+++.+++.++..+.+.+.+....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-- 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-- 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 456799999997663 4666666665556677777777653 1111 112234789999999999999987663322
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
....++.++.|++.++|.+..+....
T Consensus 194 i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 194 VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 23345678889999999886555443
No 124
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=5.3e-07 Score=95.92 Aligned_cols=190 Identities=21% Similarity=0.178 Sum_probs=101.2
Q ss_pred CCCCceEEEcccccCCC--ccccccCcceeeeecCCCCCCCC-CCCCCCCeeEEccCCccccccccccCCCCCcEEecCC
Q 004686 356 MSNLRLLEINNLYSSGN--LEYLSNNLRYLKWHEYPFNSLPV-SFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSH 432 (737)
Q Consensus 356 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~~~~~~~~l~~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 432 (737)
+..+..+.+..|.+... ....+.++..|++.++.+..+.. .-.+.+|++|++++|.|+.+.. +..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc
Confidence 33444444555555431 12334455555555555555555 3345666666666666666632 45555667777776
Q ss_pred CcCCCCCCCCCCCCCCcEEeccCcccccccc-ccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccC
Q 004686 433 SCNLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (737)
Q Consensus 433 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 511 (737)
|.+. ....+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.... + ..+..+..+..+++..|.+...-
T Consensus 150 N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~- 224 (414)
T KOG0531|consen 150 NLIS-DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLE- 224 (414)
T ss_pred Ccch-hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceecc-
Confidence 6443 33344456667777777665443322 1 3556666666666654321 1 11333333444455554443211
Q ss_pred cccCCCCc--ccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 512 QDLGEVEC--LEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 512 ~~l~~l~~--L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
.+..+.. |+.+++++|.+...+..+..+.++..|++..+.
T Consensus 225 -~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 225 -GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred -CcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 1222222 777777777777665556667777777776655
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.2e-06 Score=82.64 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=55.8
Q ss_pred CCCCeeEEccCCccc---cccccccCCCCCcEEecCCCcCCCCCCCC-CCCCCCcEEeccCcccccc-ccccccCccccc
Q 004686 399 PEKLFKLNLCNSRIK---YLWKGIKPLKELKFMNLSHSCNLIRTPDF-TGVPNLERLNLEGCTRLLE-VHQSVGTLKRLI 473 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 473 (737)
...++.+||.+|.|+ ++..-+.++|.|++|+|+.|+....+..+ ....+|++|-+.|..+... ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 457777888888776 33333677888888888888776555443 3556788888877554432 224556777788
Q ss_pred eecccccc
Q 004686 474 LLNLKDCR 481 (737)
Q Consensus 474 ~L~l~~n~ 481 (737)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 88777763
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.6e-05 Score=78.65 Aligned_cols=168 Identities=14% Similarity=0.205 Sum_probs=93.4
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc--------cCceEEEeecchhhcccChHHHHHHHHHHHhhc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTRGLVPLQEQLLSEVLME 75 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 75 (737)
+...+..+ .-.+.+.++|++|+|||++|+.++..+... |...++-.. ......+ +..+++..++...
T Consensus 29 l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~-~~i~~l~~~~~~~ 103 (367)
T PRK14970 29 LLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNNSV-DDIRNLIDQVRIP 103 (367)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCCCH-HHHHHHHHHHhhc
Confidence 34444432 234689999999999999999998865431 111111110 0011111 1122222221100
Q ss_pred ccccccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCC
Q 004686 76 RDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRG 151 (737)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~ 151 (737)
-..+++-++|+|+++... .++.++..+...+....+|+++.. ..+... .+....++.++
T Consensus 104 -----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~ 166 (367)
T PRK14970 104 -----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166 (367)
T ss_pred -----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCC
Confidence 012455689999997553 366665554433445556655543 222221 12234689999
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+++++....+.+.+.... ....++.++.++..++|.+..+..
T Consensus 167 ~~~~~l~~~l~~~~~~~g--~~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEG--IKFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred ccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHH
Confidence 999999999987663322 223446788889999997764443
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.1e-05 Score=85.50 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=100.3
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---cc-c
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DL-I 79 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~-~ 79 (737)
|..++..+ .-...+.++|+.|+|||++|+.++..+.......-. ..|. .-..++.+......+. +. .
T Consensus 28 L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~----~~c~----~c~~c~~i~~~~~~d~~~i~~~~ 98 (585)
T PRK14950 28 LRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG----RPCG----TCEMCRAIAEGSAVDVIEMDAAS 98 (585)
T ss_pred HHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----CCCc----cCHHHHHHhcCCCCeEEEEeccc
Confidence 34444432 234678999999999999999999876321110000 0011 1122333322211110 00 0
Q ss_pred ccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcC
Q 004686 80 IWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVR 150 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~ 150 (737)
....++ +..+.+.+ .+++-++|+|+++.. +..+.++..+........+|+++... .+... .+....+++.
T Consensus 99 ~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~ 177 (585)
T PRK14950 99 HTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFH 177 (585)
T ss_pred cCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCC
Confidence 011111 12222222 245679999999755 44666666555445566676666542 22221 1223478899
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+++.++..+.+.+.+.... ....++.+..|++.++|.+..+.....
T Consensus 178 ~l~~~el~~~L~~~a~~eg--l~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 178 RHSVADMAAHLRKIAAAEG--INLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999998887763322 223446788899999999865554433
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.7e-05 Score=85.13 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=94.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc--cCceEEEeec-chhhcccChHHHHHHHHHHHhhcc---cc-cccchhhhH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANV-REVSVTRGLVPLQEQLLSEVLMER---DL-IIWDVHKGI 87 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~--f~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~~---~~-~~~~~~~~~ 87 (737)
...+.++|+.|+||||+|+.++..+... ++...|...+ ..|..+. .++.+...-..+. +. .....++..
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~----sC~~~~~g~~~n~~~~d~~s~~~vd~Ir 113 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE----SCRDFDAGTSLNISEFDAASNNSVDDIR 113 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH----HHHHHhccCCCCeEEecccccCCHHHHH
Confidence 4568999999999999999999976321 1111222110 1122222 1222211100000 00 001112211
Q ss_pred HHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHH
Q 004686 88 NLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 88 ~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~ 158 (737)
.+.+.+ .+++-++|+|+++... ..++++..+-..+....+|++|.. ..+... ......+++.+++.++..
T Consensus 114 -~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~ 192 (620)
T PRK14954 114 -QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQ 192 (620)
T ss_pred -HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHH
Confidence 222222 2456689999997663 366666665544556666555543 333222 233457999999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 193 (737)
..+.+.+.... ....++.++.+++.++|....+
T Consensus 193 ~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 193 SQLQMICRAEG--IQIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHH
Confidence 88887653221 2234567888999999976533
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00022 Score=76.31 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.. ...++++..+...++...+|++|.. ..+... .+....+++.+++.++..+.+.+.+....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 56779999999755 3466666666544556666655543 222221 12234789999999999999988763322
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
....++.++.|++.++|.+..+....
T Consensus 196 i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23344667788999999876554443
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=9.7e-05 Score=79.97 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=94.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc----ccchhhhHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI----IWDVHKGINLI 90 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~l 90 (737)
...+.++|+.|+||||+|+.+++.+-...... . ..|..+. .++.+......+.... ...+++ ++.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-~----~pCg~C~----sC~~i~~g~hpDv~eId~a~~~~Id~-iR~L 107 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPT-G----EPCNTCE----QCRKVTQGMHVDVVEIDGASNRGIDD-AKRL 107 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCC-C----CCCcccH----HHHHHhcCCCCceEEEecccccCHHH-HHHH
Confidence 47899999999999999999999663211000 0 0011111 1112211100000000 000111 1112
Q ss_pred HHH-----hcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHH
Q 004686 91 RWR-----LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~-----l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+. ..+++-+||+|+++.. ...+.++..+........+|++|.. ..+... .+....++++++++++..+.+
T Consensus 108 ~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 108 KEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred HHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 221 2356679999999766 3466666665433445566665554 333222 122346899999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhCCCc-hHHHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLP-LAIEVLGS 198 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~a~ 198 (737)
.+.+.... .....+.++.|++.++|.+ .++..+..
T Consensus 188 ~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 188 TKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 87653221 2234567888999999976 45555443
No 131
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.06 E-value=9.4e-08 Score=94.18 Aligned_cols=279 Identities=17% Similarity=0.197 Sum_probs=153.1
Q ss_pred CCCcEEecCCCcCCCCCCC---CCCCCCCcEEeccCcccccccc--ccccCccccceeccccccccccC--ccccCCCCC
Q 004686 423 KELKFMNLSHSCNLIRTPD---FTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILLNLKDCRNLVSF--PKNVCLMKS 495 (737)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~ 495 (737)
..|+.|.++++.-....+. ...++++++|++.+|..+++.. ..-..|++|++|++..|..+++. ......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888888876655442 4468889999998887665432 22356788888888887655432 223356778
Q ss_pred ccEEEccCCCCCcc--cCcccCCCCcccEEEccCccCc---ccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCC
Q 004686 496 LKILCLCGCLKLEK--LPQDLGEVECLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLP 570 (737)
Q Consensus 496 L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 570 (737)
|++|+++.|.-... +.....++.+++.+.+.++.=. .+...-+.+.-+..+++..|....+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~------------- 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE------------- 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-------------
Confidence 88888888765432 1122334455555554442111 11111123344444444444311110
Q ss_pred CCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccc-cCCCCCCeEeCCCCC-Ccccch-hh-hcCCCCCEEccccC
Q 004686 571 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNN-FFSLPS-SI-NQLLKLKILCLEKC 646 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n~-l~~lp~-~l-~~l~~L~~L~l~~n 646 (737)
.....-.++..|+.|+.+++...+..+...+ .++++|+.|.++.|+ ++..-. .+ .+++.|+.+++..|
T Consensus 285 --------~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 285 --------DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred --------HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 0011134578899999999876554444444 478999999999994 553221 22 67899999999999
Q ss_pred ccCCCCC--C---CCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHHHHHHhhhhc
Q 004686 647 RNLKSLP--E---LPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLVYCKIN 721 (737)
Q Consensus 647 ~~~~~~~--~---l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~c~~~ 721 (737)
....+-. . --+.|+++.++.|...+...+..- ...-.+...|..+.+.+.+..-+...+.... |+..
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-c~~L 428 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------SSSSCSLEGLEVLELDNCPLITDATLEHLSI-CRNL 428 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------hhccccccccceeeecCCCCchHHHHHHHhh-Cccc
Confidence 8765431 1 114555555555554444311100 1111233444455554444444444444333 6554
Q ss_pred cCcCceeEe
Q 004686 722 YSFQWVVFA 730 (737)
Q Consensus 722 ~~~~~~~~~ 730 (737)
.+++-..++
T Consensus 429 eri~l~~~q 437 (483)
T KOG4341|consen 429 ERIELIDCQ 437 (483)
T ss_pred ceeeeechh
Confidence 444433333
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00015 Score=73.45 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=91.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc-------ccccchhhh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD-------LIIWDVHKG 86 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~ 86 (737)
-...+.++|+.|+|||++|+.++..+-...... ...|....+ ++.+...-..+.. .....+++
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-----~~~Cg~C~s----C~~~~~g~HPD~~~i~~~~~~~~i~id~- 90 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-----GGACGSCKG----CQLLRAGSHPDNFVLEPEEADKTIKVDQ- 90 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCCHH----HHHHhcCCCCCEEEEeccCCCCCCCHHH-
Confidence 457899999999999999999999763221100 001211111 1111111000000 00011111
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhH
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
+.++.+.+ .+++-++|+|+++.+. ...+++..+-+-+.+..+|++|.+.. +... .+....+.+.+++++++
T Consensus 91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~ 170 (328)
T PRK05707 91 VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEES 170 (328)
T ss_pred HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHH
Confidence 11222222 1345566789997653 46666665554456777887777652 2222 22234689999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+.+.+.... ...+.+..+++.++|.|.....+
T Consensus 171 ~~~L~~~~~~------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 171 LQWLQQALPE------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHhccc------CChHHHHHHHHHcCCCHHHHHHH
Confidence 9999865411 11234556788999999655433
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8e-05 Score=82.02 Aligned_cols=182 Identities=15% Similarity=0.111 Sum_probs=97.7
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc-CceEEEeecchhhcccChHHHHHHHHHHHhhcc---cc-
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DL- 78 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~- 78 (737)
|..++..+ .-...+.++|+.|+|||++|+.++..+.... +....- .|.. -..++.+......+. +.
T Consensus 28 L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~----~Cg~----C~~C~~i~~g~h~D~~ei~~~ 98 (620)
T PRK14948 28 LKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE----PCGK----CELCRAIAAGNALDVIEIDAA 98 (620)
T ss_pred HHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC----CCcc----cHHHHHHhcCCCccEEEEecc
Confidence 44444443 2235789999999999999999999764321 110000 1111 122333332211110 00
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l 149 (737)
.....+. ++++.+.+ .+++-++|+|+++... ..++++..+-.-.....+|++|.+. .+... ......+++
T Consensus 99 ~~~~vd~-IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f 177 (620)
T PRK14948 99 SNTGVDN-IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDF 177 (620)
T ss_pred ccCCHHH-HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 0011111 12222222 2456699999998663 4666666655444555566555443 22221 122346888
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
.+++.++..+.+.+.+.... .....+.+..|++.++|.+..+....
T Consensus 178 ~~l~~~ei~~~L~~ia~keg--i~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKES--IEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999998888876653221 12233567889999999886554443
No 134
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=8.9e-06 Score=81.83 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch-----hhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV-----HKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~ 89 (737)
+..+|+|++|+|||||++++++.+. ++|+..+|+....+ ....+.++++++...+..+..+.+... ....+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999664 47999889885433 224677888888744333332222211 111222
Q ss_pred HHHH-hcCCeEEEEEcCCCCh
Q 004686 90 IRWR-LCRKRVLVILDDVDQL 109 (737)
Q Consensus 90 l~~~-l~~~~~LlilDd~~~~ 109 (737)
.... ..+++++|++|++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 2222 3579999999998544
No 135
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00013 Score=82.75 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=97.8
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----cc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----DL 78 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~ 78 (737)
|..++..+ .-...++++|+.|+||||+|+.++..+....... ...|..+.+ ++.+...-.... +.
T Consensus 27 L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-----~~pCg~C~s----C~~~~~g~~~~~dv~eida 96 (824)
T PRK07764 27 LSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPT-----STPCGECDS----CVALAPGGPGSLDVTEIDA 96 (824)
T ss_pred HHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-----CCCCcccHH----HHHHHcCCCCCCcEEEecc
Confidence 44444442 2235789999999999999999999764211000 001111111 111111100000 00
Q ss_pred -cccchhhhHHHHHH-----HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEE
Q 004686 79 -IIWDVHKGINLIRW-----RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYK 148 (737)
Q Consensus 79 -~~~~~~~~~~~l~~-----~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~ 148 (737)
....+++. ..+.+ -..++.-++|||+++.+. ..+.++..+-+......+|++|.+ ..+... .+....++
T Consensus 97 as~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~ 175 (824)
T PRK07764 97 ASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYP 175 (824)
T ss_pred cccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEE
Confidence 00011111 11211 123566789999997664 466666666655667777766654 333332 22344789
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
++.++.++..+++.+.+.... .....+.+..|++.++|.+..+.
T Consensus 176 F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 999999999999887653222 22344567788999999885443
No 136
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.04 E-value=0.00015 Score=70.52 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=112.0
Q ss_pred hhhHHhhhcC-CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccC------ceEEEeecchhhcccChHHHHHHHHHHHhh
Q 004686 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (737)
Q Consensus 2 ~~l~~~l~~~-~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 74 (737)
+++.+++... ..+.+-+.|+|++|.|||+++++++......++ .++++. .....+...+-..|+.+++.
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCc
Confidence 5667777743 345688999999999999999999986543332 355555 66677888999999999887
Q ss_pred cccccccchhhhHHHHHHHhcC-CeEEEEEcCCCChH--------HHHHHhcCCCCCCCCcEEEEEeCCchhhh-----h
Q 004686 75 ERDLIIWDVHKGINLIRWRLCR-KRVLVILDDVDQLE--------QLQALVGNHDWFGFGSRIIITSRDEHVLK-----S 140 (737)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l~~-~~~LlilDd~~~~~--------~~~~l~~~l~~~~~~~~iliTtR~~~~~~-----~ 140 (737)
+.... .........+.+.++. +.-++|+|++.+.- +.-+.+..+.+.-.-+-|.+-|++...+- .
T Consensus 123 P~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 65433 2333444444455543 45699999996641 12222222222223445666666532111 1
Q ss_pred cCcccEEEcCCCCh-hhHHHHHhhhccC---CCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 141 HGVTNTYKVRGLDY-VEALQLFHLKVSN---GKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 141 ~~~~~~~~l~~l~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
.+...++.++..+. ++...|+...... .....-..++.+..|...++|+.--+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 11223556665543 4555565443211 112223456788999999999874444
No 137
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.04 E-value=1.4e-05 Score=74.95 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=26.7
Q ss_pred hhhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 2 ~~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+++...+. ......+.++|+|++|+|||+++++++.++...
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45556664 234456999999999999999999999987666
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=4.5e-05 Score=76.04 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc-c-CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ-F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
-+.++|++|+|||++|+.++..+.+. + ...-++. ++. .++.. .+.... .. ....+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~~l~~----~~~g~~------~~-~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----DDLVG----QYIGHT------AP-KTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----HHHhH----hhcccc------hH-HHHHHHHHc
Confidence 68999999999999999998865432 1 1112332 111 12222 111111 01 112222222
Q ss_pred cCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhhhc--------CcccEEEcCCCChh
Q 004686 95 CRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--------GVTNTYKVRGLDYV 155 (737)
Q Consensus 95 ~~~~~LlilDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~--------~~~~~~~l~~l~~~ 155 (737)
..-+|++|+++.. +..+.+...+.+...+.+||.++......... +....+++++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 3358899999633 12344444443334455666666543221111 22347899999999
Q ss_pred hHHHHHhhhcc
Q 004686 156 EALQLFHLKVS 166 (737)
Q Consensus 156 ~~~~l~~~~~~ 166 (737)
+..+++...+.
T Consensus 199 dl~~I~~~~l~ 209 (284)
T TIGR02880 199 ELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.03 E-value=7e-05 Score=78.37 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=80.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-|.++|++|+|||++|+.++.+....| +.+. . .++...... .....+..+.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~----~------~~l~~~~~g-----------~~~~~i~~~f~~ 219 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV----G------SELVQKFIG-----------EGARLVRELFEL 219 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCE---EEee----h------HHHhHhhcc-----------chHHHHHHHHHH
Confidence 356799999999999999999999764331 1221 1 111111100 011112222232
Q ss_pred h-cCCeEEEEEcCCCChH------------H----HHHHhcCCCC--CCCCcEEEEEeCCchhhh-----hcCcccEEEc
Q 004686 94 L-CRKRVLVILDDVDQLE------------Q----LQALVGNHDW--FGFGSRIIITSRDEHVLK-----SHGVTNTYKV 149 (737)
Q Consensus 94 l-~~~~~LlilDd~~~~~------------~----~~~l~~~l~~--~~~~~~iliTtR~~~~~~-----~~~~~~~~~l 149 (737)
. ...+.+|++|+++... . +..++..+.. ...+..||.||....... ..+.+..+++
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 2 2456899999987541 1 2223222211 123456666666432111 1234557999
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
++.+.++..++|+....+...... .....+++.+.|.
T Consensus 300 ~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 999999999999877633221111 1234566666664
No 140
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.4e-07 Score=99.06 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=80.7
Q ss_pred CCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchh-hhcCCCCCEEccccCccCCCCCCCCCcccee
Q 004686 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKLKILCLEKCRNLKSLPELPPEIVFV 662 (737)
Q Consensus 584 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l 662 (737)
+.-++.|+.|+|++|++.. .+.+..|++|++|||++|.+..+|.. ..+|. |+.|+|+||...+-.
T Consensus 183 Lqll~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~---------- 248 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR---------- 248 (1096)
T ss_pred HHHHHHhhhhccchhhhhh---hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh----------
Confidence 4457889999999998543 23677889999999999998888752 34454 999999998854322
Q ss_pred ecccccccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 663 GAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 663 ~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
.+.++.+|..|+++.|...-..--..++.+..|..|.|.+|.+-+
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 567888888888888833333333456788889999999988754
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00012 Score=77.97 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.. +..+.++..+.+.+....+|++|... .+... ......+++.++++++..+.+.+.+... .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e--g 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE--G 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc--C
Confidence 56778999999755 33555655555445566676666432 22221 1223478999999999999888765322 2
Q ss_pred ChHHHHHHHHHHHHhCCCchHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
....++.++.|++.++|.+..+.
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDAE 220 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22345678889999999775433
No 142
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.00 E-value=0.00016 Score=73.54 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=114.6
Q ss_pred ChhhHHhhhcCCCCeEEEEEEcCCCCcHHHHH-HHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---
Q 004686 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLA-KVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER--- 76 (737)
Q Consensus 1 ~~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--- 76 (737)
+++|..||..... ..|+|.||-|+||+.|+ .++..+. +.+.+++|. ......+-..++..++++++=-+
T Consensus 5 ~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~r----~~vL~IDC~-~i~~ar~D~~~I~~lA~qvGY~PvFs 77 (431)
T PF10443_consen 5 IEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKDR----KNVLVIDCD-QIVKARGDAAFIKNLASQVGYFPVFS 77 (431)
T ss_pred HHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhCC----CCEEEEECh-HhhhccChHHHHHHHHHhcCCCcchH
Confidence 3678899987543 49999999999999999 6666642 235555532 22223344444555555544100
Q ss_pred -------------------cccc-cchhhhH--------HHHHH-------------------Hh---cCCeEEEEEcCC
Q 004686 77 -------------------DLII-WDVHKGI--------NLIRW-------------------RL---CRKRVLVILDDV 106 (737)
Q Consensus 77 -------------------~~~~-~~~~~~~--------~~l~~-------------------~l---~~~~~LlilDd~ 106 (737)
.... ...+..+ ..+++ ++ ..++-+||+||+
T Consensus 78 w~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF 157 (431)
T PF10443_consen 78 WMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNF 157 (431)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcch
Confidence 0000 0111111 11111 01 123679999998
Q ss_pred CCh-----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhh----hc--CcccEEEcCCCChhhHHHHHhhhccCCC
Q 004686 107 DQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK----SH--GVTNTYKVRGLDYVEALQLFHLKVSNGK 169 (737)
Q Consensus 107 ~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~----~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 169 (737)
.+. .+|.+.+.. ++-..||++|-+....+ .+ .....+.+.-.+.+.|.+|..++.....
T Consensus 158 ~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 158 LHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred hccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 322 246666555 45667888888754433 23 2344688899999999999998874321
Q ss_pred CC-------------C-----hHHHHHHHHHHHHhCCCchHHHHHHHHhcC
Q 004686 170 QP-------------T-----DYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (737)
Q Consensus 170 ~~-------------~-----~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~ 202 (737)
.. . ....+..+..+...||=-.-+..+++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 10 0 124455677788899988889999888875
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00028 Score=76.89 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=99.8
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhc---cccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---RDLI 79 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~ 79 (737)
.|..++..+ .-...+.++|+.|+|||++|+.++..+-..-... .. +|..+.+. +++...-..+ .+..
T Consensus 27 ~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~-~~----pC~~C~~C----~~i~~~~~~dv~~idga 96 (563)
T PRK06647 27 TLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT-PM----PCGECSSC----KSIDNDNSLDVIEIDGA 96 (563)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC-CC----CCccchHH----HHHHcCCCCCeEEecCc
Confidence 445555543 2346799999999999999999999763210000 00 01111111 1111110000 0000
Q ss_pred -ccchhhhHHHHHHH-----hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEc
Q 004686 80 -IWDVHKGINLIRWR-----LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKV 149 (737)
Q Consensus 80 -~~~~~~~~~~l~~~-----l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l 149 (737)
....++.. .+.+. ..+++-++|+|+++... .+++++..+-..+....+|++|.. ..+... ......++.
T Consensus 97 s~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 97 SNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred ccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 00111111 11111 13566789999997664 477777776655566777666644 222221 122336899
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
++++.++..+.+.+.+... .....++.+..|++.++|.+..+...
T Consensus 176 ~~l~~~el~~~L~~i~~~e--gi~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 176 RLLSLEKIYNMLKKVCLED--QIKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred cCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998776332 22345577888999999988654443
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.98 E-value=4.5e-05 Score=81.05 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=74.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhccc-----CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (737)
..+-++++||+|+|||++|+.+++.+...+ ....|+. +... +++.....+ . ........+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v~~~----eLl~kyvGe----t---e~~ir~iF~ 279 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----IKGP----ELLNKYVGE----T---ERQIRLIFQ 279 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----ccch----hhcccccch----H---HHHHHHHHH
Confidence 346799999999999999999999775442 1223332 1111 111111000 0 000111111
Q ss_pred HHHHH-hcCCeEEEEEcCCCChH---------H-----HHHHhcCCCCC--CCCcEEEEEeCCchh-----hhhcCcccE
Q 004686 89 LIRWR-LCRKRVLVILDDVDQLE---------Q-----LQALVGNHDWF--GFGSRIIITSRDEHV-----LKSHGVTNT 146 (737)
Q Consensus 89 ~l~~~-l~~~~~LlilDd~~~~~---------~-----~~~l~~~l~~~--~~~~~iliTtR~~~~-----~~~~~~~~~ 146 (737)
...+. ..+++++|++|+++..- + +..++..+... ..+..||.||..... ....+.+..
T Consensus 280 ~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 280 RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVK 359 (512)
T ss_pred HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceE
Confidence 22221 13578999999996431 1 23444433211 133445555543322 112244557
Q ss_pred EEcCCCChhhHHHHHhhhcc
Q 004686 147 YKVRGLDYVEALQLFHLKVS 166 (737)
Q Consensus 147 ~~l~~l~~~~~~~l~~~~~~ 166 (737)
++++..+.++..++|.....
T Consensus 360 I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 360 IRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EEeCCCCHHHHHHHHHHHhh
Confidence 99999999999999998763
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.4e-05 Score=79.72 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=40.5
Q ss_pred CCCCCccEEEccCCCCCcccCcccCCCCcccEEEccC-ccCcccCcccccCCCCcEEEccCCC
Q 004686 491 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
..+.+++.|++++|.+ ..+|. -..+|++|.+++ +.++.+|..+ +++|++|.+++|.
T Consensus 49 ~~~~~l~~L~Is~c~L-~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 49 EEARASGRLYIKDCDI-ESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHhcCCCEEEeCCCCC-cccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 3468899999999854 45562 234799999987 4566777654 4689999998874
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00025 Score=78.21 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeC-Cchhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSR-DEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++... ..++++..+-..+....+|++|. ...+... .+....+++.++++++..+.+.+.+....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-- 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-- 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--
Confidence 455689999997663 46677666655456666666554 3333322 23344789999999999999987653222
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
....++.++.|++.++|...-+..
T Consensus 198 i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 198 ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 223445678899999997754443
No 147
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.95 E-value=0.0001 Score=77.10 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhcC
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 96 (737)
+++|.||-++||||+++.+.....+. .+++.. .....-..-+.+.... +.+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~----~d~~~~~~~l~d~~~~------------------~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINF----DDLRLDRIELLDLLRA------------------YIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEe----cchhcchhhHHHHHHH------------------HHHhhcc
Confidence 99999999999999997777765444 566551 1111111111111111 1111112
Q ss_pred CeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchh-----hhhc-CcccEEEcCCCChhhHHHHHhhhccCCCC
Q 004686 97 KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV-----LKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (737)
Q Consensus 97 ~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~-----~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 170 (737)
++..+++|.|+....|......+.+.++. +|++|+-+... +... +....+++-||+..|-..+--..+ .
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~ 168 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E 168 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c
Confidence 77899999999999999998888877766 88888876432 2222 234478899999988877643111 0
Q ss_pred CChHHHHHHHHHHHHhCCCchHHHH
Q 004686 171 PTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 171 ~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
.. .... .-+-.-.+||.|.++..
T Consensus 169 ~~-~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 PS-KLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred hh-HHHH-HHHHHHHhCCCcHHHhC
Confidence 00 1111 22223357999977663
No 148
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00034 Score=69.65 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cc-CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+.++|++|+|||++|+.++..... .+ ...-|+. ++ ..++...+..+ . ... ...+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~l~~~~~g~----~------~~~-~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDDLVGQYIGH----T------APK-TKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHHHHHHHhcc----c------hHH-HHHHHHH
Confidence 45899999999999999999986432 22 1111322 11 11222222111 0 011 1122222
Q ss_pred hcCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhh--------hcCcccEEEcCCCCh
Q 004686 94 LCRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK--------SHGVTNTYKVRGLDY 154 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~--------~~~~~~~~~l~~l~~ 154 (737)
. ..-+|++|+++.. +..+.+...+.+.....+||.++....... ..+....+++++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2 2349999999653 223444444333344566777765433211 113345799999999
Q ss_pred hhHHHHHhhhcc
Q 004686 155 VEALQLFHLKVS 166 (737)
Q Consensus 155 ~~~~~l~~~~~~ 166 (737)
+|..+++...+.
T Consensus 199 ~el~~I~~~~l~ 210 (287)
T CHL00181 199 EELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 149
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.87 E-value=2.5e-05 Score=79.10 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch-----hhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV-----HKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~ 89 (737)
..++|+|++|+||||+++.+++.+.. +|+..+|+.... .+...+.++++++...+.....+.+... +...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIg--ER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLID--ERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcC--CCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 57999999999999999999997654 488888887421 2236788899888554433333322211 111122
Q ss_pred HHHH-hcCCeEEEEEcCCCChH
Q 004686 90 IRWR-LCRKRVLVILDDVDQLE 110 (737)
Q Consensus 90 l~~~-l~~~~~LlilDd~~~~~ 110 (737)
.... ..+++.+|++|++....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHH
Confidence 2222 35799999999996553
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00043 Score=75.77 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=97.5
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc----
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---- 78 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---- 78 (737)
.|..++..+. -...+.++|+.|+|||++|+.++..+-..-... ..+|..+. .++.+......+...
T Consensus 27 ~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~~pC~~C~----~C~~i~~g~~~dv~eidaa 96 (559)
T PRK05563 27 TLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----GEPCNECE----ICKAITNGSLMDVIEIDAA 96 (559)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCccH----HHHHHhcCCCCCeEEeecc
Confidence 3444555432 346788999999999999999998653211000 00122221 222222211100000
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l 149 (737)
.....+ .+..+.+.. .++.-++|+|+++.. ..+.+++..+-.-+....+|++|.. ..+... .+....++.
T Consensus 97 s~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f 175 (559)
T PRK05563 97 SNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDF 175 (559)
T ss_pred ccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEec
Confidence 000111 122222221 246779999999765 4477777665544555566655543 322221 122346889
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
.+++.++..+.+...+.... .....+.+..|++.++|.+..+.
T Consensus 176 ~~~~~~ei~~~L~~i~~~eg--i~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 176 KRISVEDIVERLKYILDKEG--IEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999887663222 22334667788889998875443
No 151
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00014 Score=71.13 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
..++=|.++||+|.|||-||+++|++.... |+. +.. .++++..+.+ ....+.++.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIr----vvg----SElVqKYiGE-----------GaRlVRelF~ 238 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIR----VVG----SELVQKYIGE-----------GARLVRELFE 238 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEE----ecc----HHHHHHHhcc-----------chHHHHHHHH
Confidence 345679999999999999999999976543 333 111 1233333322 2244566666
Q ss_pred HhcC-CeEEEEEcCCCChH-------------H---HHHHhcCCCCC--CCCcEEEEEeCCchh-----hhhcCcccEEE
Q 004686 93 RLCR-KRVLVILDDVDQLE-------------Q---LQALVGNHDWF--GFGSRIIITSRDEHV-----LKSHGVTNTYK 148 (737)
Q Consensus 93 ~l~~-~~~LlilDd~~~~~-------------~---~~~l~~~l~~~--~~~~~iliTtR~~~~-----~~~~~~~~~~~ 148 (737)
..+. .+.+|.+|.++... . +-.++..+-.. ....|||.+|-...+ ...-+.+..++
T Consensus 239 lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIE 318 (406)
T COG1222 239 LAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIE 318 (406)
T ss_pred HHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceee
Confidence 6654 57899999875441 1 33444444322 345588877765433 22334566788
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
++.-+.+...++|+=+...-..... --.+.+++.+.|.-
T Consensus 319 fplPd~~gR~~Il~IHtrkM~l~~d---vd~e~la~~~~g~s 357 (406)
T COG1222 319 FPLPDEEGRAEILKIHTRKMNLADD---VDLELLARLTEGFS 357 (406)
T ss_pred cCCCCHHHHHHHHHHHhhhccCccC---cCHHHHHHhcCCCc
Confidence 8855555566666544422111111 12455677777754
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00047 Score=75.87 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---cc-c
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DL-I 79 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~-~ 79 (737)
|..++..+ .-...+.++|+.|+||||+|+.++..+...-. ... ..|..+ ..++++...-..+. +. .
T Consensus 28 L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~~----~~c~~c----~~c~~i~~g~~~d~~eid~~s 97 (576)
T PRK14965 28 LQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQG-LTA----EPCNVC----PPCVEITEGRSVDVFEIDGAS 97 (576)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CCC----CCCCcc----HHHHHHhcCCCCCeeeeeccC
Confidence 44444432 23467789999999999999999987532100 000 001111 11111111100000 00 0
Q ss_pred ccchhhhHHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcC
Q 004686 80 IWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVR 150 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~ 150 (737)
....++ +..+.+.+ .+++-++|+|+++... ..++++..+-.......+|++|.. ..+... .+....++++
T Consensus 98 ~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~ 176 (576)
T PRK14965 98 NTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFR 176 (576)
T ss_pred ccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcC
Confidence 001111 12222222 2455689999997653 366666555444566666665544 333322 1223468899
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchH
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 192 (737)
+++.++..+.+...+... .....++.+..|++.++|....
T Consensus 177 ~l~~~~i~~~L~~i~~~e--gi~i~~~al~~la~~a~G~lr~ 216 (576)
T PRK14965 177 RIPLQKIVDRLRYIADQE--GISISDAALALVARKGDGSMRD 216 (576)
T ss_pred CCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCHHH
Confidence 999999998887765322 2224456678899999997643
No 153
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.84 E-value=0.00014 Score=74.72 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 82 (737)
.+.+++..+ .-..++.++|++|+|||++|+.+++..... ..++. +.. ..+ +..++.+......
T Consensus 32 ~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~~-~~i~~~l~~~~~~------- 94 (316)
T PHA02544 32 TFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CRI-DFVRNRLTRFAST------- 94 (316)
T ss_pred HHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-ccH-HHHHHHHHHHHHh-------
Confidence 345555542 234677889999999999999999876322 23333 221 111 1122211111000
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCCh---HHHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhH
Q 004686 83 VHKGINLIRWRLCRKRVLVILDDVDQL---EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 83 ~~~~~~~l~~~l~~~~~LlilDd~~~~---~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
. ...+.+-++|+|+++.. +..+.+...+.....+..+|+||.... +... .+....+.++..+.++.
T Consensus 95 --------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~ 165 (316)
T PHA02544 95 --------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQ 165 (316)
T ss_pred --------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHH
Confidence 0 01134568999999766 122233222223346678888886532 1111 12223677777788887
Q ss_pred HHHHhh
Q 004686 158 LQLFHL 163 (737)
Q Consensus 158 ~~l~~~ 163 (737)
.+++..
T Consensus 166 ~~il~~ 171 (316)
T PHA02544 166 IEMMKQ 171 (316)
T ss_pred HHHHHH
Confidence 766554
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.84 E-value=0.00081 Score=66.48 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=91.3
Q ss_pred hhHHhhhcCCCC-eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHh-hcccccc
Q 004686 3 KMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDLII 80 (737)
Q Consensus 3 ~l~~~l~~~~~~-~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~ 80 (737)
++..++-+.+.. +..|.|+|.+|.|||.+++++.+... ...+|+. +-...+.+-+.+.|+.+.. .+.++..
T Consensus 17 ~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~~ 89 (438)
T KOG2543|consen 17 RLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKILNKSQLADKDGDK 89 (438)
T ss_pred HHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHHHHhccCCCchhh
Confidence 344445444333 45569999999999999999998652 2357887 6667778888899998864 2222221
Q ss_pred cc-----hhhhHHHHHH--Hhc--CCeEEEEEcCCCChHHHHHH-----hcCCCCCCCCcEEEEEeCCchhhhh---cCc
Q 004686 81 WD-----VHKGINLIRW--RLC--RKRVLVILDDVDQLEQLQAL-----VGNHDWFGFGSRIIITSRDEHVLKS---HGV 143 (737)
Q Consensus 81 ~~-----~~~~~~~l~~--~l~--~~~~LlilDd~~~~~~~~~l-----~~~l~~~~~~~~iliTtR~~~~~~~---~~~ 143 (737)
.+ .-+.+..+.+ ... ++.++||+||++...++++. .....-.+.....|+++-...-... .++
T Consensus 90 ~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~ 169 (438)
T KOG2543|consen 90 VEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGT 169 (438)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCC
Confidence 11 1222233333 122 35899999999777653221 1111001222334444443221221 233
Q ss_pred cc--EEEcCCCChhhHHHHHhhhc
Q 004686 144 TN--TYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 144 ~~--~~~l~~l~~~~~~~l~~~~~ 165 (737)
.. ++..+..+.++..+++.+.-
T Consensus 170 ~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 170 LEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCceEEecCCCCHHHHHHHHhcCC
Confidence 22 56788999999999997654
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.83 E-value=0.00017 Score=63.08 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999874
No 156
>CHL00176 ftsH cell division protein; Validated
Probab=97.83 E-value=0.00049 Score=75.96 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=82.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+-|+++|++|+|||++|+.++...... |+. ++. .++....... ........+.+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is~----s~f~~~~~g~----------~~~~vr~lF~~A~ 272 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----ISG----SEFVEMFVGV----------GAARVRDLFKKAK 272 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----ccH----HHHHHHhhhh----------hHHHHHHHHHHHh
Confidence 4579999999999999999999865221 222 110 1111110000 0111122233334
Q ss_pred cCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCchhhh-----hcCcccEEEcCC
Q 004686 95 CRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVLK-----SHGVTNTYKVRG 151 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~ 151 (737)
...+.+|++|+++... .+..++..+.. .+.+..||.||....... ..+.+..+.++.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 4678999999996441 13344333221 234555666665532211 123456788888
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG 188 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G 188 (737)
.+.++..++++..+..... ........+++.+.|
T Consensus 353 Pd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 353 PDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 8999999999887743111 122345667777777
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.83 E-value=0.00033 Score=72.97 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=81.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-|.++|++|+|||++|+.++......| +.+. . .++......+ ....+..+.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~----~------s~l~~k~~ge-----------~~~~lr~lf~~ 233 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV----G------SEFVQKYLGE-----------GPRMVRDVFRL 233 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h------HHHHHHhcch-----------hHHHHHHHHHH
Confidence 457899999999999999999999754332 1211 0 1111111100 01112222222
Q ss_pred -hcCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCchhhh-----hcCcccEEEc
Q 004686 94 -LCRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVLK-----SHGVTNTYKV 149 (737)
Q Consensus 94 -l~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~~~~-----~~~~~~~~~l 149 (737)
....+.+|++|+++..- .+..++..+.. ...+..||+||......+ ..+.+..+++
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~ 313 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 313 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEe
Confidence 23568899999975430 12233332221 124566777777542221 1234557889
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+..+.++..++|+.......... ......+++.+.|.-
T Consensus 314 ~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 314 PLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 98899998888886653221111 112445666666653
No 158
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.81 E-value=0.00015 Score=77.36 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+-|.++||+|+|||.+|+.++..+.-.| +-+. +. ++..... .+.+..+..+.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~----~~------~l~~~~v-----------Gese~~l~~~f~ 312 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD----VG------KLFGGIV-----------GESESRMRQMIR 312 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE----hH------Hhccccc-----------ChHHHHHHHHHH
Confidence 3457899999999999999999999864332 1111 10 0000000 000111222222
Q ss_pred H-hcCCeEEEEEcCCCChH--------------HHHHHhcCCCCCCCCcEEEEEeCCch-hh----hhcCcccEEEcCCC
Q 004686 93 R-LCRKRVLVILDDVDQLE--------------QLQALVGNHDWFGFGSRIIITSRDEH-VL----KSHGVTNTYKVRGL 152 (737)
Q Consensus 93 ~-l~~~~~LlilDd~~~~~--------------~~~~l~~~l~~~~~~~~iliTtR~~~-~~----~~~~~~~~~~l~~l 152 (737)
. -...+++|++|+++..- .+..++..+.....+..||.||.... +. ...+.+..+.++.-
T Consensus 313 ~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP 392 (489)
T CHL00195 313 IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLP 392 (489)
T ss_pred HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCc
Confidence 2 23478999999986431 12223322222234445666665432 11 22245567888888
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.++..++|+......... .......+.+++.+.|.-
T Consensus 393 ~~~eR~~Il~~~l~~~~~~-~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 393 SLEEREKIFKIHLQKFRPK-SWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CHHHHHHHHHHHHhhcCCC-cccccCHHHHHhhcCCCC
Confidence 8999999998776332111 011123456666666654
No 159
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=0.0001 Score=71.27 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=40.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.+++.++-+.-.++.|+|++|+|||++|.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566777777777789999999999999999999987655556788886
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.78 E-value=9.4e-05 Score=65.84 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.+.|+|++|+||||+++.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57999999999999999999997765543455554
No 161
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0011 Score=66.70 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.+. .-.+++-.+-+-+.++.+|++|... .+... .+.-..+.+.+.+.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 456799999997764 3555555444435677777777653 33322 2233478899999999999887531 1
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
....+..++..++|.|.....+
T Consensus 187 ---~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 ---SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567789999999765443
No 162
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00024 Score=68.31 Aligned_cols=135 Identities=21% Similarity=0.230 Sum_probs=71.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH----HhcccCceEEEe-ecc-hhhcccChHHHHHHHHHHHhhcccccccchhhhH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNT----LKDQFEASSFLA-NVR-EVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~----~~~~f~~~~~~~-~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 87 (737)
..|+|.++||+|.|||+|+++.|+. ..+.|.....+- +.+ -++.+. .+ .. .-+....
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF----------sE----Sg---KlV~kmF 238 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF----------SE----SG---KLVAKMF 238 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH----------hh----hh---hHHHHHH
Confidence 3599999999999999999999994 334454433332 111 122222 11 10 1122233
Q ss_pred HHHHHHhcCC--eEEEEEcCCCCh-----------------HHHHHHhcCCCCC-CCCcEEEEEeCCc----hhhhhcCc
Q 004686 88 NLIRWRLCRK--RVLVILDDVDQL-----------------EQLQALVGNHDWF-GFGSRIIITSRDE----HVLKSHGV 143 (737)
Q Consensus 88 ~~l~~~l~~~--~~LlilDd~~~~-----------------~~~~~l~~~l~~~-~~~~~iliTtR~~----~~~~~~~~ 143 (737)
+.+.+.++.+ =..+.+|+|+.. ....+++..+-.. ...+.+|+||-+- .+|-..+-
T Consensus 239 ~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRA 318 (423)
T KOG0744|consen 239 QKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRA 318 (423)
T ss_pred HHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHh
Confidence 4444444443 356778887332 2244555444322 3455556666542 11111122
Q ss_pred ccEEEcCCCChhhHHHHHhhhc
Q 004686 144 TNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 144 ~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
+-+..+++-+.+..+++++.+.
T Consensus 319 Di~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 319 DIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred hheeecCCccHHHHHHHHHHHH
Confidence 3355677777777777776543
No 163
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=0.00012 Score=72.22 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.-++++|++|+|||.||..+++.+.+....++|+. ..+++..+....... .......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-------~~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-------GKEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-------ccccHHHHHHHhc
Confidence 46899999999999999999998765544455554 233444444332111 0111233444454
Q ss_pred CCeEEEEEcCCC--ChHHHH--HHhcCCCC-CCCCcEEEEEeCCc
Q 004686 96 RKRVLVILDDVD--QLEQLQ--ALVGNHDW-FGFGSRIIITSRDE 135 (737)
Q Consensus 96 ~~~~LlilDd~~--~~~~~~--~l~~~l~~-~~~~~~iliTtR~~ 135 (737)
+-. ||||||+. ...+|. .+...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999993 222221 12211110 12455688888753
No 164
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00042 Score=64.51 Aligned_cols=160 Identities=23% Similarity=0.243 Sum_probs=90.4
Q ss_pred hHHhhhcC----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 4 MNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 4 l~~~l~~~----~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
|.++|.+. +=.++.|..+||+|.|||.+|+++++..+-- ++. +..+ +++ ....+
T Consensus 136 i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-----~l~----vkat----~li---GehVG------ 193 (368)
T COG1223 136 IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-----LLL----VKAT----ELI---GEHVG------ 193 (368)
T ss_pred HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-----eEE----echH----HHH---HHHhh------
Confidence 44555532 2247899999999999999999999965322 222 1111 111 11111
Q ss_pred ccchhhhHHHHHHHh-cCCeEEEEEcCCCCh--------------HHHHHHhcCCCC--CCCCcEEEEEeCCchhhhh--
Q 004686 80 IWDVHKGINLIRWRL-CRKRVLVILDDVDQL--------------EQLQALVGNHDW--FGFGSRIIITSRDEHVLKS-- 140 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-~~~~~LlilDd~~~~--------------~~~~~l~~~l~~--~~~~~~iliTtR~~~~~~~-- 140 (737)
+....+.++.+.. +.-++++.+|.++.. +...+++..+-. .+.|...|-+|......+.
T Consensus 194 --dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 194 --DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred --hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 1112233333333 346899999988544 236677666642 3466666655555433322
Q ss_pred -cCcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 141 -HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 141 -~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
.+...-++..--+++|..+++...+ ...+.+.... .+.++++++|.-
T Consensus 272 RsRFEeEIEF~LP~~eEr~~ile~y~--k~~Plpv~~~-~~~~~~~t~g~S 319 (368)
T COG1223 272 RSRFEEEIEFKLPNDEERLEILEYYA--KKFPLPVDAD-LRYLAAKTKGMS 319 (368)
T ss_pred HhhhhheeeeeCCChHHHHHHHHHHH--HhCCCccccC-HHHHHHHhCCCC
Confidence 2334456777678888888888776 2222222222 556777777753
No 165
>PRK08181 transposase; Validated
Probab=97.72 E-value=9.7e-05 Score=72.28 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.-++++|++|+|||.||..+++...+....++|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 46999999999999999999997655444456654
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.71 E-value=0.00065 Score=74.00 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=82.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+-+.++||+|+|||++|+.++...... ++. ++ ..++....... ........+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~-----~~~----i~----~~~~~~~~~g~----------~~~~l~~~f~~a~ 144 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS----IS----GSDFVEMFVGV----------GASRVRDLFEQAK 144 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC-----eee----cc----HHHHHHHHhcc----------cHHHHHHHHHHHH
Confidence 4569999999999999999999864322 221 11 11111111000 0011111222223
Q ss_pred cCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCch-----hhhhcCcccEEEcCC
Q 004686 95 CRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEH-----VLKSHGVTNTYKVRG 151 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~ 151 (737)
...+.+|++|+++... .+..++..+.. ...+..||.||.... +....+.+..++++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 3567899999985431 12233322211 123445555555432 111224456788998
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc-hHHHHH
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP-LAIEVL 196 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~ 196 (737)
.+.++..+++.......... .......+++.+.|.- -.|..+
T Consensus 225 Pd~~~R~~il~~~l~~~~~~---~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLA---PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCC---cchhHHHHHHhCCCCCHHHHHHH
Confidence 89999999998776332211 1123457788887743 444443
No 167
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.71 E-value=0.0016 Score=67.19 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=34.3
Q ss_pred hhhHHhhhcCC-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 2 ~~l~~~l~~~~-~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+.|.+.+...+ ....+|+|.|+=|+|||++.+.+...+++.
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 45677777643 677999999999999999999999988766
No 168
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.00022 Score=67.05 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=53.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
..-+.++|..|+|||++++++.......--..|-+. -..-.++.++ .+.+. -
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~----k~~L~~l~~l----------------------~~~l~--~ 103 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS----KEDLGDLPEL----------------------LDLLR--D 103 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC----HHHhccHHHH----------------------HHHHh--c
Confidence 457888999999999999999997765432233332 1111112111 22222 1
Q ss_pred cCCeEEEEEcCC---CChHHHHHHhcCC---CCCCCCcEEEEEeCCc
Q 004686 95 CRKRVLVILDDV---DQLEQLQALVGNH---DWFGFGSRIIITSRDE 135 (737)
Q Consensus 95 ~~~~~LlilDd~---~~~~~~~~l~~~l---~~~~~~~~iliTtR~~ 135 (737)
.+.+|+|.+||. .....+..+...+ ....+.+.+|.+|-++
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 267899999997 2223344444444 3334666666555553
No 169
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.6e-05 Score=51.69 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCCCeEeCCCCCCcccchhhhcCCCCCEEccccCc
Q 004686 613 FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 613 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 647 (737)
++|++|++++|+++.+|..+.+|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35667777777777666666777777777777775
No 170
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0036 Score=62.85 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=91.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc-------ccccchhhh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD-------LIIWDVHKG 86 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~ 86 (737)
-...+.++|+.|+||+++|+.++..+--.-... ..|.... .++.+......+.. +....+++
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~------~~Cg~C~----sC~~~~~g~HPD~~~i~p~~~~~~I~vdq- 92 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQS------EACGFCH----SCELMQSGNHPDLHVIKPEKEGKSITVEQ- 92 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC------CCCCCCH----HHHHHHcCCCCCEEEEecCcCCCcCCHHH-
Confidence 346899999999999999999999652211100 0121111 11111111000000 00011111
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhH
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
+..+.+.+ .+++-++|+|+++.+. ...+++-.+-+-+++..+|++|.+. .+... .+.-..+.+.+++++++
T Consensus 93 iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~ 172 (319)
T PRK06090 93 IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQA 172 (319)
T ss_pred HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHH
Confidence 12222332 2455699999997664 4666666655446677777766654 33332 23334789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+.+.+... . ....+++.++|.|.....+
T Consensus 173 ~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 173 MQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 999875421 1 1345788899999866544
No 171
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.67 E-value=0.00026 Score=74.19 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-|+++|++|+|||++|+.++......| +.+.. . ++....... ....+..+.+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~~------s----eL~~k~~Ge-----------~~~~vr~lF~~ 271 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATF---LRVVG------S----ELIQKYLGD-----------GPKLVRELFRV 271 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEec------c----hhhhhhcch-----------HHHHHHHHHHH
Confidence 345788999999999999999999765443 11210 0 011111000 01112222222
Q ss_pred -hcCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCchhhhh-----cCcccEEEc
Q 004686 94 -LCRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVLKS-----HGVTNTYKV 149 (737)
Q Consensus 94 -l~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~~~~~-----~~~~~~~~l 149 (737)
....+.++++|+++... .+..++..+.. ...+..||+||........ .+.+..+++
T Consensus 272 A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351 (438)
T ss_pred HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEe
Confidence 23467889999874321 12222222211 1245677777775432221 234557899
Q ss_pred CCCChhhHHHHHhhhcc
Q 004686 150 RGLDYVEALQLFHLKVS 166 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~ 166 (737)
+..+.++..++|.....
T Consensus 352 ~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987653
No 172
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.66 E-value=0.00017 Score=68.91 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=38.0
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.+++.++-+.-.++.|+|++|+|||+++.+++.........++|++
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3556677777899999999999999999999987655556788887
No 173
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0037 Score=63.45 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=58.9
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.+. ...+++-.+-+-+++..+|++|.+ ..+... .+....+.+.++++++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 455689999997664 466666666555677766666655 333332 2223478999999999999997642 1
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+ .+.++..++|.|.....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223567789999655433
No 174
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.63 E-value=0.00016 Score=69.58 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=39.3
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.+++.++-+.-.++.|+|++|+|||+++.+++......-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566777777777799999999999999999999987655445677775
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0027 Score=63.97 Aligned_cols=162 Identities=13% Similarity=0.077 Sum_probs=91.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc------cccccchhhhHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER------DLIIWDVHKGIN 88 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~ 88 (737)
.....++|+.|+||+++|+.++..+--.-... ...|....+ ++.+......+. ......+++ +.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-----~~~Cg~C~s----C~~~~~g~HPD~~~i~p~~~~~I~id~-iR 93 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQG-----DQPCGQCHS----CHLFQAGNHPDFHILEPIDNKDIGVDQ-VR 93 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCCHH----HHHHhcCCCCCEEEEccccCCCCCHHH-HH
Confidence 46888999999999999999999653211000 001221111 111211100000 000011111 22
Q ss_pred HHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHH
Q 004686 89 LIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQ 159 (737)
Q Consensus 89 ~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~ 159 (737)
.+.+.+ .+++-++|+|+++.+. ...+++-.+-+-+++..+|++|... .+... .+.-..+.+.++++++..+
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALD 173 (325)
T ss_pred HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHH
Confidence 222232 2466789999997664 4666666665556777777777764 33322 2233478999999999999
Q ss_pred HHhhhccCCCCCChHHHHHHHHHHHHhCCCchHH
Q 004686 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (737)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 193 (737)
.+.+.... . ...+...++.++|.|...
T Consensus 174 ~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 174 WLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 99875411 1 123556678899999533
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.5e-05 Score=50.46 Aligned_cols=40 Identities=30% Similarity=0.585 Sum_probs=34.1
Q ss_pred CCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccc
Q 004686 588 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP 629 (737)
Q Consensus 588 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp 629 (737)
++|++|++++|++.+ +|..+.++++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999654 8888999999999999999998776
No 177
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.62 E-value=0.00065 Score=75.31 Aligned_cols=80 Identities=14% Similarity=-0.046 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEE--EeCCch-hhhhc-CcccEEEcCCCChhhHHHH
Q 004686 87 INLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEH-VLKSH-GVTNTYKVRGLDYVEALQL 160 (737)
Q Consensus 87 ~~~l~~~l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~ili--TtR~~~-~~~~~-~~~~~~~l~~l~~~~~~~l 160 (737)
...+.+.++.+++.++-|..|.. ..|+.+...+....+...+++ ||++.. +.... .....+.+.+++.++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 34455555566666655444322 124444433333333344444 555432 11111 1223678899999999999
Q ss_pred Hhhhcc
Q 004686 161 FHLKVS 166 (737)
Q Consensus 161 ~~~~~~ 166 (737)
+++.+.
T Consensus 362 l~~~a~ 367 (615)
T TIGR02903 362 VLNAAE 367 (615)
T ss_pred HHHHHH
Confidence 998763
No 178
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.0024 Score=65.03 Aligned_cols=190 Identities=11% Similarity=0.104 Sum_probs=112.3
Q ss_pred hhHHhhhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCc--eEEEeecchhhcccChHHHHHHHHHHHhhcccc
Q 004686 3 KMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (737)
Q Consensus 3 ~l~~~l~~--~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 78 (737)
.+.+++.. .......+.|.|-+|.|||.+...++.+....... ++++. |..-....++...|...+.+....
T Consensus 161 ~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF~kI~~~~~q~~~s 236 (529)
T KOG2227|consen 161 IVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIFKKIFSSLLQDLVS 236 (529)
T ss_pred HHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHHHHHHHHHHHHhcC
Confidence 34555553 23345789999999999999999999977665543 46665 444455667777777776444433
Q ss_pred cccchhhhHHHHHHHhcC--CeEEEEEcCCCChHH------HHHHhcCCCCCCCCcEEEEEeCCc------hhhhh----
Q 004686 79 IIWDVHKGINLIRWRLCR--KRVLVILDDVDQLEQ------LQALVGNHDWFGFGSRIIITSRDE------HVLKS---- 140 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l~~--~~~LlilDd~~~~~~------~~~l~~~l~~~~~~~~iliTtR~~------~~~~~---- 140 (737)
...+ .+..+.+.+..++ +.+|+|+|+.|+... +.-|.++. -+++++++.---. +....
T Consensus 237 ~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~---lp~sr~iLiGiANslDlTdR~LprL~~~ 312 (529)
T KOG2227|consen 237 PGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK---LPNSRIILIGIANSLDLTDRFLPRLNLD 312 (529)
T ss_pred Cchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc---CCcceeeeeeehhhhhHHHHHhhhhhhc
Confidence 3333 3334555555543 368999999977642 22333222 2455555433211 01111
Q ss_pred cC-cccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 004686 141 HG-VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLC 201 (737)
Q Consensus 141 ~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~ 201 (737)
.. .-..+..+|++.++..+++.++...... .......++..++++.|.--.++.+..+.+
T Consensus 313 ~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 313 LTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred cCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11 1226778999999999999998743222 222224555666677666555555544444
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0024 Score=64.96 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=91.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc-------cccchhhh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-------IIWDVHKG 86 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~ 86 (737)
-...+.++|+.|+||+++|..++..+--.-... ...|..+.+ ++.+......+..- ....+++
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-----~~~Cg~C~s----C~~~~~g~HPD~~~i~p~~~~~~I~idq- 92 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-----HKSCGHCRG----CQLMQAGTHPDYYTLTPEKGKSSLGVDA- 92 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCCHH----HHHHHcCCCCCEEEEecccccccCCHHH-
Confidence 356899999999999999999999653210000 000211111 11111110000000 0011111
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhH
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
+..+.+.+ .+++-++|+|+++.+. .-.+++-.+-+-+.+..+|++|.+. .+... .+.-..+.+.+++++++
T Consensus 93 iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~ 172 (334)
T PRK07993 93 VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYA 172 (334)
T ss_pred HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHH
Confidence 22223322 2567799999997664 4566665555446777777777764 33322 22233689999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
.+.+.+.. + ...+.+..+++.++|.|....
T Consensus 173 ~~~L~~~~--~-----~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 173 LTWLSREV--T-----MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHcc--C-----CCHHHHHHHHHHcCCCHHHHH
Confidence 99886542 1 112346678899999996443
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0022 Score=65.59 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=76.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc--cCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----cccccchhhh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----DLIIWDVHKG 86 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 86 (737)
-.....++|+.|+|||++|+.++..+-.. .... .|.... .++.+......+. +......++
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~----~c~~~~~~~hpD~~~i~~~~~~i~id~- 94 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCT----NCKRIDSGNHPDVHLVAPDGQSIKKDQ- 94 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCH----HHHHHhcCCCCCEEEeccccccCCHHH-
Confidence 34688999999999999999999865321 1100 011111 1111111000000 000001111
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhH
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~ 157 (737)
+..+.+.+ .+++-++|+|+++... ..++++..+-+.+.++.+|++|.++. +... .+....+++.++++++.
T Consensus 95 ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~ 174 (329)
T PRK08058 95 IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESL 174 (329)
T ss_pred HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHH
Confidence 11222222 2456689999997664 36666666655567777887776542 2222 23344799999999999
Q ss_pred HHHHhhh
Q 004686 158 LQLFHLK 164 (737)
Q Consensus 158 ~~l~~~~ 164 (737)
.+.+.+.
T Consensus 175 ~~~L~~~ 181 (329)
T PRK08058 175 IQRLQEE 181 (329)
T ss_pred HHHHHHc
Confidence 8888753
No 181
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.58 E-value=2.3e-05 Score=73.11 Aligned_cols=240 Identities=15% Similarity=0.115 Sum_probs=115.7
Q ss_pred CCCCcEEeccCcccccccc----ccccCccccceecccccccccc----C-------ccccCCCCCccEEEccCCCCCcc
Q 004686 445 VPNLERLNLEGCTRLLEVH----QSVGTLKRLILLNLKDCRNLVS----F-------PKNVCLMKSLKILCLCGCLKLEK 509 (737)
Q Consensus 445 ~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~----~-------~~~~~~l~~L~~L~l~~~~~~~~ 509 (737)
+..+..+++++|.+.+... ..+.+-.+|+..+++. -+++. + .+.+.+|+.|++.+|+.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4455566666655543322 2233345555555554 22221 1 12345566777777777666655
Q ss_pred cCcc----cCCCCcccEEEccCccCcccCc--------------ccccCCCCcEEEccCCCC-CCCcCccchhhhcccCC
Q 004686 510 LPQD----LGEVECLEELDVGGTAIRQIPP--------------SIVQLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLP 570 (737)
Q Consensus 510 ~~~~----l~~l~~L~~L~l~~~~~~~l~~--------------~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~ 570 (737)
.|.. +.+-..|++|.+++|.+..+.. ....-|.|+......|.. ..+.....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a--------- 178 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA--------- 178 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH---------
Confidence 5433 3445567777777766553211 112234555555555441 11100000
Q ss_pred CCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCc----cccccCCCCCCeEeCCCCCCccc-----chhhhcCCCCCEE
Q 004686 571 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI----PSDIGSLFSLEAIDLSGNNFFSL-----PSSINQLLKLKIL 641 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~n~l~~l-----p~~l~~l~~L~~L 641 (737)
.-+..-.+|+++.+..|.+....+ ...+..+.+|+.|++.+|.++.. ...++.-+.|++|
T Consensus 179 -----------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 179 -----------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred -----------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 001112456677776666322111 11234566777777777766522 2233444556777
Q ss_pred ccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceE------EEecCCCccccccccchHHH
Q 004686 642 CLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIAL------NFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 642 ~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~ 707 (737)
.+..|-....-.. .-++.+.=...|+|+.|....|-...+.+.. .=.++|-|..|-+.+|.|.-
T Consensus 248 ~lnDClls~~G~~--~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVK--SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHH--HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7777654322100 1111112223566666666665222222211 12467888888888787753
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.00015 Score=73.31 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++++|+.|+|||.||..+++.+.+....++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999997765545667765
No 183
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00093 Score=69.93 Aligned_cols=129 Identities=21% Similarity=0.290 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
..=|+++||+|+|||-||++++++.+.. |+. +..+ +++..+..+ -+..+..+.+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-----Fis----VKGP----ELlNkYVGE-----------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-----FIS----VKGP----ELLNKYVGE-----------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-----eEe----ecCH----HHHHHHhhh-----------HHHHHHHHHHHh
Confidence 3468999999999999999999976544 333 2111 233333322 122334444443
Q ss_pred -cCCeEEEEEcCCCChH-------------HHHHHhcCCCC--CCCCcEEEEEe-CCchh----hhhcCcccEEEcCCCC
Q 004686 95 -CRKRVLVILDDVDQLE-------------QLQALVGNHDW--FGFGSRIIITS-RDEHV----LKSHGVTNTYKVRGLD 153 (737)
Q Consensus 95 -~~~~~LlilDd~~~~~-------------~~~~l~~~l~~--~~~~~~iliTt-R~~~~----~~~~~~~~~~~l~~l~ 153 (737)
..-+++|.+|.++..- .+..++.-+-. ...|.-||-+| |+..+ ...-+.+..+-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4578999999985441 25556555532 23555565444 44322 2222445567777778
Q ss_pred hhhHHHHHhhhccC
Q 004686 154 YVEALQLFHLKVSN 167 (737)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (737)
.+|..++++.....
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 88999999887743
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.00074 Score=77.68 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=79.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
.-+.++|++|+|||++|+.+++++.... ...+|............. ..+.+..+..
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~------------------~ge~e~~lk~ 270 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV------------------KGEFENRLKS 270 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc------------------chHHHHHHHH
Confidence 3567999999999999999999875432 122332211111000000 0112222222
Q ss_pred HHHHh--cCCeEEEEEcCCCChH---------HHHH-HhcCCCCCCCCcEEEEEeCCchhhhh-------cCcccEEEcC
Q 004686 90 IRWRL--CRKRVLVILDDVDQLE---------QLQA-LVGNHDWFGFGSRIIITSRDEHVLKS-------HGVTNTYKVR 150 (737)
Q Consensus 90 l~~~l--~~~~~LlilDd~~~~~---------~~~~-l~~~l~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~ 150 (737)
+.+.+ .+++.++++|+++... +... +.+.+. .-.-++|-||...+..+. .+....+.++
T Consensus 271 ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~ 348 (852)
T TIGR03345 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVE 348 (852)
T ss_pred HHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeC
Confidence 33322 2478999999985442 1222 333322 123456656654322111 1223479999
Q ss_pred CCChhhHHHHHhhhccC-CC-CCChHHHHHHHHHHHHhCCC
Q 004686 151 GLDYVEALQLFHLKVSN-GK-QPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~i~~~~~G~ 189 (737)
+++.++..++++..... +. ......++....+++.+.+.
T Consensus 349 eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 349 EPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 99999999997543311 11 12223445556666666553
No 185
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.58 E-value=0.00038 Score=67.80 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=74.6
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc---
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--- 78 (737)
..|.++|.++-+.-.++.|+|++|+|||+++.+++......-..+.|+. . ..+..++.+++.+ ++.+..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~----~--e~~~~~~~~~~~~-~g~~~~~~~~ 84 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT----T--ENTSKSYLKQMES-VKIDISDFFL 84 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE----c--CCCHHHHHHHHHH-CCCChhHHHh
Confidence 4566777777778899999999999999999999875433445677765 2 4555666655432 2211110
Q ss_pred ----------------cccchhhhHHHHHHHhcC-CeEEEEEcCCC------ChHHHHHHhcCCCC-CCCCcEEEEEeCC
Q 004686 79 ----------------IIWDVHKGINLIRWRLCR-KRVLVILDDVD------QLEQLQALVGNHDW-FGFGSRIIITSRD 134 (737)
Q Consensus 79 ----------------~~~~~~~~~~~l~~~l~~-~~~LlilDd~~------~~~~~~~l~~~l~~-~~~~~~iliTtR~ 134 (737)
...+.+...+.+.+.++. +.-++|+|.+. ..+....+...+.. ...+..+++|+..
T Consensus 85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 011224455556666543 55689999864 12223333222211 1345667777764
Q ss_pred c
Q 004686 135 E 135 (737)
Q Consensus 135 ~ 135 (737)
.
T Consensus 165 ~ 165 (234)
T PRK06067 165 Y 165 (234)
T ss_pred C
Confidence 3
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.00068 Score=74.28 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=28.7
Q ss_pred hhhHHhhhcC---CCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 2 EKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 2 ~~l~~~l~~~---~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+++..|+... ....++++|+|++|+||||+++.++..+
T Consensus 94 ~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 94 EEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566666642 2234689999999999999999999854
No 187
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.57 E-value=0.00043 Score=65.77 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
-.++|.|++|+|||++++.+.......|+.+.++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 47899999999999999999999889997666554
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=97.57 E-value=0.00026 Score=69.52 Aligned_cols=34 Identities=29% Similarity=0.211 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
..+.|+|++|+|||+||..++.........+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4788999999999999999988643332334444
No 189
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00041 Score=69.45 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=64.4
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 83 (737)
+...|-++--.-.+|.|-|.+|+|||||..+++.++.+.. .+.||. ..+++.++... +..++...+....-.
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR-A~RL~~~~~~l~l~a 153 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR-ADRLGLPTNNLYLLA 153 (456)
T ss_pred HHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH-HHHhCCCccceEEeh
Confidence 3333444333447999999999999999999999988766 778854 45666665443 334444333333333
Q ss_pred hhhHHHHHHHhc-CCeEEEEEcCCCCh
Q 004686 84 HKGINLIRWRLC-RKRVLVILDDVDQL 109 (737)
Q Consensus 84 ~~~~~~l~~~l~-~~~~LlilDd~~~~ 109 (737)
+..++.+.+.+. .++-++|+|.+++.
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEecccee
Confidence 444555665554 57789999998654
No 190
>PRK06526 transposase; Provisional
Probab=97.55 E-value=0.00018 Score=70.12 Aligned_cols=34 Identities=26% Similarity=0.087 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEE
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 48 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~ 48 (737)
.+.+.++|++|+|||+||..++.........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3579999999999999999999865443223344
No 191
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0027 Score=64.08 Aligned_cols=171 Identities=14% Similarity=0.107 Sum_probs=91.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------cCceEEEeecchhhcccChHHHHHHHHHHHhhc-ccc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ---------------FEASSFLANVREVSVTRGLVPLQEQLLSEVLME-RDL 78 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~---------------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~~~ 78 (737)
.....++|+.|+||+++|..++..+-.. .....|+...... ....+. ...+...+.. ...
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~-~g~~~~---~~~~~~~~~~~~~~ 101 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH-QGKLIT---ASEAEEAGLKRKAP 101 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-cccccc---hhhhhhcccccccc
Confidence 4799999999999999999999865221 1122333210000 000000 0000010000 000
Q ss_pred cccchhhhHHHHHHHhc-----CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWRLC-----RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l~-----~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l 149 (737)
..-.+++ +..+.+.+. +++-++|+|+++.+. ...+++..+-+-+ ...+|++|.+. .+... .+....+++
T Consensus 102 ~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f 179 (314)
T PRK07399 102 PQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPF 179 (314)
T ss_pred ccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEec
Confidence 0011111 233444433 466799999997664 3555655554334 44555555443 33222 233457999
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.++++++..+.+.+..... ... .....++..++|.|......
T Consensus 180 ~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 180 YRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998764211 111 12357888999999665543
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00035 Score=74.74 Aligned_cols=149 Identities=18% Similarity=0.181 Sum_probs=79.1
Q ss_pred hhhHHhhh----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc
Q 004686 2 EKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (737)
Q Consensus 2 ~~l~~~l~----~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 77 (737)
+||.++|. ...-.-+++.++||+|||||+|++.+|..+...|-.... ..+....-++---+....
T Consensus 333 eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL----GGvrDEAEIRGHRRTYIG------- 401 (782)
T COG0466 333 ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL----GGVRDEAEIRGHRRTYIG------- 401 (782)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec----CccccHHHhccccccccc-------
Confidence 35555554 222334799999999999999999999987665421111 111111100000000000
Q ss_pred ccccchhhhHHHHHHHhcCCeEEEEEcCCCChH------HHHHHhcCCC-CCC--------------CCcEEEEEeCCch
Q 004686 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE------QLQALVGNHD-WFG--------------FGSRIIITSRDEH 136 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~------~~~~l~~~l~-~~~--------------~~~~iliTtR~~~ 136 (737)
.++-.+-+-....+.+.-|++||.+|.+. .-.+++..+- ..+ ....+|.|.-+-.
T Consensus 402 ----amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 402 ----AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred ----cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 11111222222334677899999986653 2445555442 111 1122333333322
Q ss_pred -hh-hhcCcccEEEcCCCChhhHHHHHhhhc
Q 004686 137 -VL-KSHGVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 137 -~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
+. .......++++.+.+++|-.++-+++.
T Consensus 478 tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 478 TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 22 223345689999999999998887764
No 193
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00077 Score=71.28 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch----hhhHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV----HKGINLIR 91 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~l~ 91 (737)
....+.|+-|+||||+||-++..+--.-. ....+|..+... +.|... ...+.-++ ...++.++
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~~~ePC~~C~~C----k~I~~g----~~~DviEiDaASn~gVddiR 105 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCENG-----PTAEPCGKCISC----KEINEG----SLIDVIEIDAASNTGVDDIR 105 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCCC-----CCCCcchhhhhh----HhhhcC----CcccchhhhhhhccChHHHH
Confidence 45678999999999999999997632111 111112222221 222211 11111111 11233343
Q ss_pred HHh--------cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCch-hh-hhcCcccEEEcCCCChhhHHH
Q 004686 92 WRL--------CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VL-KSHGVTNTYKVRGLDYVEALQ 159 (737)
Q Consensus 92 ~~l--------~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~-~~~~~~~~~~l~~l~~~~~~~ 159 (737)
+.. ++|.=++|+|+|.-. ..|.+++-.+-.-+.+.++|++|++.. +. ...+...++.++.++.++...
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~ 185 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAK 185 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHH
Confidence 333 245569999999655 459999888877778888888888742 22 123344578999999999999
Q ss_pred HHhhhccCCCCCChHHHHHHHHHHHHhCCCchH
Q 004686 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 192 (737)
.+...+ ..+.-...++.+..|++...|-.+-
T Consensus 186 ~L~~i~--~~E~I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 186 HLAAIL--DKEGINIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred HHHHHH--HhcCCccCHHHHHHHHHHcCCChhh
Confidence 988877 3334445556677788888886543
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.52 E-value=0.0022 Score=64.18 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..++.++|+||+|+|||.+|+.++.++.-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456899999999999999999999987543
No 195
>PRK12377 putative replication protein; Provisional
Probab=97.52 E-value=0.00041 Score=67.03 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...+.++|++|+|||.||..+++.+.+....++|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357999999999999999999998766555566665
No 196
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=1e-05 Score=75.36 Aligned_cols=137 Identities=15% Similarity=0.061 Sum_probs=70.0
Q ss_pred cccccCCCCCcEEecCCCcCCCCCCC-----CCCCCCCcEEeccCcccccc----cc---------ccccCccccceecc
Q 004686 416 WKGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTRLLE----VH---------QSVGTLKRLILLNL 477 (737)
Q Consensus 416 ~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~---------~~~~~l~~L~~L~l 477 (737)
.+.+-.|++|+..+||+|.+....+. +++...|.+|.+++|..-.. +. .-..+-|.|+.+..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34567788888888888887655442 56677888888888753211 10 11223455666666
Q ss_pred cccccccc----CccccCCCCCccEEEccCCCCCccc-----CcccCCCCcccEEEccCccCcc-----cCcccccCCCC
Q 004686 478 KDCRNLVS----FPKNVCLMKSLKILCLCGCLKLEKL-----PQDLGEVECLEELDVGGTAIRQ-----IPPSIVQLVNL 543 (737)
Q Consensus 478 ~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L 543 (737)
..|++..- ....+..-.+|+.+.+..|.+.-.- ...+..+.+|+.|++..|.++. +...++.++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 66554211 0111222245555555555443210 1123344556666666655542 12223334445
Q ss_pred cEEEccCCC
Q 004686 544 KIFSLHGCK 552 (737)
Q Consensus 544 ~~L~l~~~~ 552 (737)
+.|.+..|.
T Consensus 245 rEL~lnDCl 253 (388)
T COG5238 245 RELRLNDCL 253 (388)
T ss_pred hhccccchh
Confidence 555555444
No 197
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.52 E-value=0.0004 Score=67.56 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=47.2
Q ss_pred ChhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHH
Q 004686 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL 69 (737)
Q Consensus 1 ~~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (737)
++.|.+++.++-+.-.++.|.|++|+|||++|.+++....+.-..++|+. ...+..++.+++.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs------~ee~~~~i~~~~~ 69 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA------LEEHPVQVRRNMA 69 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE------eeCCHHHHHHHHH
Confidence 34567778888888899999999999999999998875444456778865 2456666666543
No 198
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.50 E-value=0.00045 Score=71.13 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=58.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
+.|.+.|..+-..-.++.|.|++|+||||++.+++.........++|+. . .++..++... ++.++...+....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs----~--EEs~~qi~~R-a~rlg~~~~~l~l 141 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS----G--EESPEQIKLR-ADRLGISTENLYL 141 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----C--CcCHHHHHHH-HHHcCCCcccEEE
Confidence 4566666666566689999999999999999999987665545677765 1 2344443322 2333322221111
Q ss_pred chhhhHHHHHHHhc-CCeEEEEEcCCCC
Q 004686 82 DVHKGINLIRWRLC-RKRVLVILDDVDQ 108 (737)
Q Consensus 82 ~~~~~~~~l~~~l~-~~~~LlilDd~~~ 108 (737)
..+...+.+.+.+. .+.-++|+|.+..
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSIQT 169 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcchHH
Confidence 11112233333332 3566899998743
No 199
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00037 Score=66.06 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCchhhhhcC--cccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 124 FGSRIIITSRDEHVLKSHG--VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 124 ~~~~iliTtR~~~~~~~~~--~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
+..-|=-|||.-.+....+ .....++.=.+.+|..+++.+.+ .........+.+.+|+++..|.|....
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a--~~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA--KILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHH--HHhCCCCChHHHHHHHHhccCCcHHHH
Confidence 3344668899754444332 33356788899999999998876 333344555778899999999996544
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=3.2e-05 Score=85.94 Aligned_cols=63 Identities=24% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCCCCCcEEeccCCCCCCCC-c----cccccCCCCCCeEeCCCCCCc--ccchhhhcCCCCCEEccccC
Q 004686 584 FTGLSSLQTLDLSDCNLLEGA-I----PSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKC 646 (737)
Q Consensus 584 ~~~~~~L~~L~l~~~~~~~~~-~----~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n 646 (737)
+.++++|+.||+|........ + .++-..+|+|+.||.|++.+. .+...+.+-|+|+.+.+.+|
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 344556666666555432211 0 112234677788888777666 23333455566666655543
No 201
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.47 E-value=0.00097 Score=76.13 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
.-+.++|++|+|||++|+.+++++.+.. ...+|..+ ...+.... + -..+.+..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~---------~~~l~a~~-~--------~~g~~e~~l~~ 265 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD---------MGSLLAGT-K--------YRGDFEERLKA 265 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec---------HHHHhhhc-c--------ccchHHHHHHH
Confidence 3578999999999999999999764321 23344321 11111000 0 00123333444
Q ss_pred HHHHhc-CCeEEEEEcCCCChH----------H-HHHHhcCCCCCCCC-cEEEEEeCCchhhh------h-cCcccEEEc
Q 004686 90 IRWRLC-RKRVLVILDDVDQLE----------Q-LQALVGNHDWFGFG-SRIIITSRDEHVLK------S-HGVTNTYKV 149 (737)
Q Consensus 90 l~~~l~-~~~~LlilDd~~~~~----------~-~~~l~~~l~~~~~~-~~iliTtR~~~~~~------~-~~~~~~~~l 149 (737)
+.+.++ .++.+|++|+++... + -+.+.+.+. .| ..+|-+|...+... . .+....+++
T Consensus 266 i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v 342 (731)
T TIGR02639 266 VVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDV 342 (731)
T ss_pred HHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEe
Confidence 444432 457899999986331 1 222333322 23 34554444322111 1 122347899
Q ss_pred CCCChhhHHHHHhhhc
Q 004686 150 RGLDYVEALQLFHLKV 165 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~ 165 (737)
.+.+.++..++++...
T Consensus 343 ~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 343 GEPSIEETVKILKGLK 358 (731)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 202
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0009 Score=60.17 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=68.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEee-cchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-VREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
+.|.++|.+|+||||+|++++..+++.-..++.+.. ......+.-...+.++.+++..- +.....+...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~---------ks~~rlldSal 72 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL---------KSVERLLDSAL 72 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH---------HHHHHHHHHHh
Confidence 578999999999999999999977665444443320 00000011111233344433211 11122344444
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCC-CCCcEEEEEeCCchhhhhcCcccEEEcCCCChhhHHHHHhhhc
Q 004686 95 CRKRVLVILDDVDQLEQLQALVGNHDWF-GFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~~~~~l~~~l~~~-~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
+.+++|.|+..-...+..-+...... ...-.||-+-.+...+-... .-.-.|.++|-..+++.+.-
T Consensus 73 --kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN---~ergepip~Evl~qly~RfE 139 (261)
T COG4088 73 --KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN---RERGEPIPEEVLRQLYDRFE 139 (261)
T ss_pred --cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh---ccCCCCCCHHHHHHHHHhhc
Confidence 38999999997665433322222211 22223443333332222111 22345667777777776543
No 203
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00015 Score=69.05 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH-H-hcccCceEEEeecchhh-----cccCh----HHHHHHHHHHHhhcccccccchh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT-L-KDQFEASSFLANVREVS-----VTRGL----VPLQEQLLSEVLMERDLIIWDVH 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~-~-~~~f~~~~~~~~~~~~~-----~~~~~----~~~~~~i~~~l~~~~~~~~~~~~ 84 (737)
.+|++.|++|+|||+||..++.+ + .+.|+.++.....-... .+-+. ....+-+...+..-... ...+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~--~~~~ 152 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA--SFMQ 152 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhCh--HHHH
Confidence 49999999999999999999884 4 34455444432110000 00111 11222222222110000 0001
Q ss_pred hhH--------HHHHHHhcCCeE---EEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 85 KGI--------NLIRWRLCRKRV---LVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 85 ~~~--------~~l~~~l~~~~~---LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
... -.-..+++++.+ +||+|++++.. +...++... +.++++|++--..
T Consensus 153 ~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~ 213 (262)
T PRK10536 153 YCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT 213 (262)
T ss_pred HHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence 000 011235566655 99999998765 355555543 6899999887654
No 204
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.44 E-value=0.00055 Score=66.82 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=37.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~ 50 (737)
..|.+++.++-+.-.++.|+|++|+|||+++..++...... ...++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 45666777777777999999999999999999998643221 25678876
No 205
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.43 E-value=0.00041 Score=69.31 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=58.2
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 77 (737)
.|...|. .+-+.-+++-|+|++|+|||++|..++......-..++|++. ....+. +.++.++.+.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~----E~~~~~-----~~a~~lGvd~~~l~v 112 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA----EHALDP-----VYAKKLGVDLDNLLI 112 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc----cccHHH-----HHHHHcCCCHHHhee
Confidence 4555666 566677899999999999999999998866555566788762 211111 22333332211
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
..+.+.++....+....+ +..-+||+|.+.
T Consensus 113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 112233444444544443 345689999863
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00024 Score=63.69 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=47.4
Q ss_pred CeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCC-CCCCcEEeccCcccccccc-ccccCccccceecccc
Q 004686 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTG-VPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKD 479 (737)
Q Consensus 402 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 479 (737)
...+||++|.+..++. |..++.|.+|.+.+|+++...+.+.. +++|+.|.+.+|.+..... ..+..||+|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3344455555444422 44455555555555555555554332 3445555555544322111 2344555555555555
Q ss_pred cccccc---CccccCCCCCccEEEccC
Q 004686 480 CRNLVS---FPKNVCLMKSLKILCLCG 503 (737)
Q Consensus 480 n~~~~~---~~~~~~~l~~L~~L~l~~ 503 (737)
|+.... --..+..+++|+.||+..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 543321 112345556666666544
No 207
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=1.4e-05 Score=66.64 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=47.7
Q ss_pred CCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccC
Q 004686 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 586 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
.++.++.|++++|.+.+ +|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|...
T Consensus 75 kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 34567778888888655 788888888888888888888877777777788888888777643
No 208
>PTZ00202 tuzin; Provisional
Probab=97.41 E-value=0.00075 Score=68.68 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=84.0
Q ss_pred hhHHhhhcCC-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 3 KMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 3 ~l~~~l~~~~-~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
++.+.+...+ ...+++.|+|++|+||||+++.++.... ...++.+. .+..++++.++++++........
T Consensus 273 ~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eElLr~LL~ALGV~p~~~k~ 342 (550)
T PTZ00202 273 WVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDTLRSVVKALGVPNVEACG 342 (550)
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHHHHHHHHHcCCCCcccHH
Confidence 4455555322 3457999999999999999999997543 23444322 25689999999999864332222
Q ss_pred ch-hhhHHHHHHHh-c-CCeEEEEEc--CCCChH-HHHHHhcCCCCCCCCcEEEEEeCCchh--hh-hcCcccEEEcCCC
Q 004686 82 DV-HKGINLIRWRL-C-RKRVLVILD--DVDQLE-QLQALVGNHDWFGFGSRIIITSRDEHV--LK-SHGVTNTYKVRGL 152 (737)
Q Consensus 82 ~~-~~~~~~l~~~l-~-~~~~LlilD--d~~~~~-~~~~l~~~l~~~~~~~~iliTtR~~~~--~~-~~~~~~~~~l~~l 152 (737)
+. +...+.+.+.. . +++.+||+- +-.+.. .+.+.... ..-..-|.|++-.--+.+ +. ..+.-..+.+++|
T Consensus 343 dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~evpleslt~~~~~lprldf~~vp~f 421 (550)
T PTZ00202 343 DLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNF 421 (550)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-HccchhheeeeeehHhhcchhcccCccceeEecCCC
Confidence 22 12222222221 2 566666664 222222 12221111 101233444443322111 11 1223346889999
Q ss_pred ChhhHHHHHhhhc
Q 004686 153 DYVEALQLFHLKV 165 (737)
Q Consensus 153 ~~~~~~~l~~~~~ 165 (737)
+.++|.++..+..
T Consensus 422 sr~qaf~y~~h~~ 434 (550)
T PTZ00202 422 SRSQAFAYTQHAI 434 (550)
T ss_pred CHHHHHHHHhhcc
Confidence 9999999998765
No 209
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.00046 Score=68.98 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=58.6
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 77 (737)
.|..+|. .+-+.-+++.|+|++|+||||||..++......-..++|++. . +.+.. ..++.++.+.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~----E--~~~~~---~~a~~lGvd~~~l~v 112 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA----E--HALDP---VYARKLGVDIDNLLV 112 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc----c--chhHH---HHHHHcCCCHHHeEE
Confidence 4555665 666777999999999999999999998866555566778762 2 22221 12333332211
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
..+...++....+....+ +..-+||+|.+.
T Consensus 113 ~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 113 SQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred ecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 112233444555544443 356689999874
No 210
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.0012 Score=63.92 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=38.8
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~ 50 (737)
+.|.+++.++-+.-.++.|+|++|+|||+++..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 456777777777778999999999999999999988654443 5567776
No 211
>PRK04328 hypothetical protein; Provisional
Probab=97.41 E-value=0.0012 Score=64.59 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.9
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.+++.++-+.-.++.|.|++|+|||+++.+++.+....-..++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566777777777899999999999999999999886444456677765
No 212
>PRK09354 recA recombinase A; Provisional
Probab=97.41 E-value=0.0005 Score=69.27 Aligned_cols=96 Identities=18% Similarity=0.144 Sum_probs=60.0
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 77 (737)
.|..+|. ++-+.-+++-|+|++|+|||+|+..++......-..++|++ .....+. ..++.++.+.+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId----~E~s~~~-----~~a~~lGvdld~lli 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID----AEHALDP-----VYAKKLGVDIDNLLV 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchHH-----HHHHHcCCCHHHeEE
Confidence 4556666 66677799999999999999999999887665556778876 2222221 23344333221
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
..+...++....+...++ +..-+||+|.+.
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 112234444445544443 345689999874
No 213
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5.3e-05 Score=84.27 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecc
Q 004686 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAE 665 (737)
Q Consensus 586 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~ 665 (737)
-+|+|++|.+++-.+..+.+...+.++|+|..||+|+++++.+ .+++++++|++|.+.+-.....- . | .++-
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~-~----l--~~LF 217 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQ-D----L--IDLF 217 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchh-h----H--HHHh
Confidence 4789999999987765655566677899999999999999988 58899999999988886544310 0 1 1345
Q ss_pred cccccccccccccccCCCC-c----eEEEecCCCccccccccchHHHHHHHHHHH
Q 004686 666 DCTSLETISAFAKLSRSPN-I----ALNFLNCFKLVEDQVSKDNLAVTLMKQWLL 715 (737)
Q Consensus 666 ~c~~L~~l~~~~~~~~~~~-~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 715 (737)
++.+|+.||++........ + -..-..+|+|+.||.|++.+....++.++.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 6677777777655333322 1 122346899999999999999988888865
No 214
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.0007 Score=68.40 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc-Cce-EEEeecchhhcccChHHHHHHHHHHHhhcccccccc----hh-hhHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD----VH-KGIN 88 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~-~~~~ 88 (737)
..++|+|++|+||||+++.+++.+.+.. +.. +|+.. ..+...+.++.+.+...+.....+.+.. .. ...+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999775543 332 34332 4456678888888887765443222211 11 1112
Q ss_pred HHHHH-hcCCeEEEEEcCCCCh
Q 004686 89 LIRWR-LCRKRVLVILDDVDQL 109 (737)
Q Consensus 89 ~l~~~-l~~~~~LlilDd~~~~ 109 (737)
....+ -++++.+||+|++...
T Consensus 211 ~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHcCCCEEEEEeCcHHH
Confidence 22222 1479999999998543
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00053 Score=66.05 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...+.++|++|+|||+||..+++.+......++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457999999999999999999998765545556654
No 216
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00086 Score=70.18 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=80.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH-HH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-WR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~ 93 (737)
.|=|.++||+|+|||.||+.++.+.. +-++. ++.+ +|...+.+ +-+..+.++. +.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~----isAp--------eivSGvSG-------ESEkkiRelF~~A 278 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG-----VPFLS----ISAP--------EIVSGVSG-------ESEKKIRELFDQA 278 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC-----CceEe----ecch--------hhhcccCc-------ccHHHHHHHHHHH
Confidence 46799999999999999999999753 22333 2211 12222211 1222333333 33
Q ss_pred hcCCeEEEEEcCCCChH--------H-----HHHHhcCCCCC------CCCcEEE-EEeCCchhhhhc----CcccEEEc
Q 004686 94 LCRKRVLVILDDVDQLE--------Q-----LQALVGNHDWF------GFGSRII-ITSRDEHVLKSH----GVTNTYKV 149 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~--------~-----~~~l~~~l~~~------~~~~~il-iTtR~~~~~~~~----~~~~~~~l 149 (737)
...-++++++|+++.+. + ...++...-.. +.+..|| -|+|+..+...+ +.+.-|.+
T Consensus 279 ~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l 358 (802)
T KOG0733|consen 279 KSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICL 358 (802)
T ss_pred hccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeee
Confidence 44578999999986541 1 33444433211 1222222 455654433322 33445677
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
.--++.+..++++..+.+-....+ -..++|++.+-|.
T Consensus 359 ~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 359 GVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGF 395 (802)
T ss_pred cCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCc
Confidence 766777777777766533222221 1245566666664
No 217
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.37 E-value=0.0017 Score=59.53 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+++.+-+.+.||+|+||||-+..+++++-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45678899999999999999999999753
No 218
>PRK04132 replication factor C small subunit; Provisional
Probab=97.37 E-value=0.0018 Score=73.16 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=93.7
Q ss_pred EEc--CCCCcHHHHHHHHHHHH-hcccCc-eEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 20 ICG--MGGIGKTTLAKVLYNTL-KDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 20 i~G--~~G~GKT~la~~~~~~~-~~~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
+.| |.|+||||+|..+++++ .+.++. ++-+. .+...++. .++++.+....... .-.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid-~IR~iIk~~a~~~~---------------~~~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGIN-VIREKVKEFARTKP---------------IGG 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHH-HHHHHHHHHHhcCC---------------cCC
Confidence 347 88999999999999975 333322 34443 33222333 34444443221110 001
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
++.-++|+|+++... ..++++..+-..+..+++|+++.+. .+... .+....++++++++++..+.+...+....
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-- 706 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-- 706 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--
Confidence 245799999998774 4666666655445677777776654 22222 12334789999999999988876553221
Q ss_pred ChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 172 ~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.....+.+..|++.++|.+..+..+
T Consensus 707 i~i~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 707 LELTEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233467888999999988655443
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=0.00015 Score=66.62 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..-+.++|+.|+|||.||..+++.+.+.--.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 357999999999999999999986655444566665
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.34 E-value=0.0025 Score=56.51 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhccc-ChHHHHHHHHHHHhh--------c----ccccc--
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLM--------E----RDLII-- 80 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~--------~----~~~~~-- 80 (737)
..|-|++..|.|||+.|...+.+...+-..+.++. +-... ... -..+++.+.. . .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ----FlKg~~~~g--E~~~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ----FLKGGWKYG--ELKALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE----EeCCCCccC--HHHHHHhCCCcEEEECCCCCccCCCChHHH
Confidence 36788888899999999999986654444444443 11111 000 1112222210 0 00000
Q ss_pred -cchhhhHHHHHHHhcC-CeEEEEEcCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 81 -WDVHKGINLIRWRLCR-KRVLVILDDVDQL-----EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 81 -~~~~~~~~~l~~~l~~-~~~LlilDd~~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.......+...+.+.. +-=|+|||++-.. .+.+.+...+...+++..+|+|.|+.
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 0112223334444444 4459999997333 12333444333446778999999985
No 221
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.34 E-value=0.0032 Score=65.42 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=32.5
Q ss_pred ChhhHHhhh-----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 1 MEKMNGYLE-----AGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 1 ~~~l~~~l~-----~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
|+++.+|+. ...-+.++++|+||+|+||||.++.++..+
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 467788888 445567899999999999999999999854
No 222
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.33 E-value=0.0033 Score=62.13 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+-|.+.|++|+|||++|+.++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999855
No 223
>PRK06921 hypothetical protein; Provisional
Probab=97.33 E-value=0.00042 Score=68.15 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~ 50 (737)
...++++|+.|+|||.||..+++.+.+. ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4689999999999999999999987654 45566765
No 224
>PRK04296 thymidine kinase; Provisional
Probab=97.32 E-value=0.00037 Score=65.08 Aligned_cols=111 Identities=19% Similarity=0.152 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc-cccchhhhHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVHKGINLIRWRL 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l 94 (737)
.+++++|+.|.||||++..++.+...+...++++.. ....... ...++.+++..... .....++....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--ccccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 478999999999999999999987655444444420 0111111 12233333221111 01122333334443 3
Q ss_pred cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 95 ~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.++.-+||+|.++.. +++..+...+. +.|..|++|.+..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 335569999999654 32333333322 4688899999974
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.31 E-value=0.0022 Score=73.60 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=80.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH-
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 93 (737)
.+-|.++|++|+|||++|+.++......| +.+. . .+ +..... .+.+..+..+.+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~----~------~~----l~~~~v-------Gese~~i~~~f~~A 542 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR----G------PE----ILSKWV-------GESEKAIREIFRKA 542 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h------HH----Hhhccc-------CcHHHHHHHHHHHH
Confidence 45689999999999999999999765332 2221 0 01 111100 0111122223222
Q ss_pred hcCCeEEEEEcCCCChH--------------HHHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCcccEEEcCCC
Q 004686 94 LCRKRVLVILDDVDQLE--------------QLQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKVRGL 152 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~--------------~~~~l~~~l~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l 152 (737)
.+..+.+|++|+++... ....++..+... ..+..||.||......+ ..+.+..+.++..
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 23567999999985431 133343333211 23444555554432211 1245667889988
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.++..++|+....+..... ....+.+++.+.|.-
T Consensus 623 d~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 99999999976553221111 112456777777754
No 226
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0032 Score=67.27 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=86.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhccc--ChHHHHHHHHHHHhhcccccccchhhhHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTR--GLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
...-|.+.|+.|+|||.||++++..+- +.+-.+.++. |++-. .++.++..+-.. +
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~----Cs~l~~~~~e~iQk~l~~v------------------f 487 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS----CSTLDGSSLEKIQKFLNNV------------------F 487 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe----chhccchhHHHHHHHHHHH------------------H
Confidence 356899999999999999999999653 3444455555 33322 222222222222 2
Q ss_pred HHHhcCCeEEEEEcCCCChH-----------H----HHHHh----cCCCCCCCCcEEEEEeCCch-----hhhhcCcccE
Q 004686 91 RWRLCRKRVLVILDDVDQLE-----------Q----LQALV----GNHDWFGFGSRIIITSRDEH-----VLKSHGVTNT 146 (737)
Q Consensus 91 ~~~l~~~~~LlilDd~~~~~-----------~----~~~l~----~~l~~~~~~~~iliTtR~~~-----~~~~~~~~~~ 146 (737)
.+.+.-.+-+|||||++-.. . +.+++ ..+...+...++|.|...-. .......+.+
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 23344567899999984321 0 22222 11121122224445554421 1111223447
Q ss_pred EEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC-chHHHHH
Q 004686 147 YKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVL 196 (737)
Q Consensus 147 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~ 196 (737)
+.++..+.++..++++....... .....+..+-+..+|+|. |.-+.++
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 88999999999998887663222 222223344477778774 4444443
No 227
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.31 E-value=0.00041 Score=71.79 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc--ccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhh-HHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKG-INLIRW 92 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~l~~ 92 (737)
+.|.++|++|+|||++|+++++.+.. .++.+.|+. +....+..+++..+... .......+-. .+.+.+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~rP~-----~vgy~~~~G~f~~~~~~ 265 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYRPN-----GVGFRRKDGIFYNFCQQ 265 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccCCC-----CCCeEecCchHHHHHHH
Confidence 47888999999999999999997643 456667776 55555555544333111 0011111111 111112
Q ss_pred Hh--cCCeEEEEEcCCCChH
Q 004686 93 RL--CRKRVLVILDDVDQLE 110 (737)
Q Consensus 93 ~l--~~~~~LlilDd~~~~~ 110 (737)
.. ..+++++|+|+++...
T Consensus 266 A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 266 AKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred HHhcccCCcEEEEehhhccC
Confidence 11 1468999999996654
No 228
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0021 Score=68.29 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=81.8
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcc-cChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
+....+-|.++||+|+|||++|+.+++..+..|-. +....-++.+ -.-++.++++.++
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls---vkgpEL~sk~vGeSEr~ir~iF~k------------------ 522 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS---VKGPELFSKYVGESERAIREVFRK------------------ 522 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee---ccCHHHHHHhcCchHHHHHHHHHH------------------
Confidence 34456889999999999999999999976655422 1100001100 0112222333322
Q ss_pred HHHHhcCCeEEEEEcCCCChH-------------HHHHHhcCCCCCCCC-cEEEEE--eCCchhhh----hcCcccEEEc
Q 004686 90 IRWRLCRKRVLVILDDVDQLE-------------QLQALVGNHDWFGFG-SRIIIT--SRDEHVLK----SHGVTNTYKV 149 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~~-------------~~~~l~~~l~~~~~~-~~iliT--tR~~~~~~----~~~~~~~~~l 149 (737)
.-+.-+.++.||.++... .+..++.-+-..... ..+|+. .|+..+.. .-+.+..+.+
T Consensus 523 ---AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 523 ---ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred ---HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 122345888888774331 255555554433322 333333 33322222 2245667777
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.=+.+...++|+.++..- +.+.+ -..++|++.+.|.-
T Consensus 600 plPD~~aR~~Ilk~~~kkm--p~~~~-vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 600 PLPDLEARLEILKQCAKKM--PFSED-VDLEELAQATEGYS 637 (693)
T ss_pred cCccHHHHHHHHHHHHhcC--CCCcc-ccHHHHHHHhccCC
Confidence 7777777788998877322 22111 23556777777764
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.29 E-value=0.0023 Score=74.09 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=74.9
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-----c-CceEEEeecchhhcccChHHHHHHHHHHHhhc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----F-EASSFLANVREVSVTRGLVPLQEQLLSEVLME 75 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 75 (737)
+++.++|.... .+-+.++|++|+|||++|+.++.++... . ...+|..+.. +++. . .
T Consensus 189 ~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~---------~l~a----g---~ 250 (821)
T CHL00095 189 ERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG---------LLLA----G---T 250 (821)
T ss_pred HHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH---------HHhc----c---C
Confidence 34555555432 2356799999999999999999976432 1 2344433211 1110 0 0
Q ss_pred ccccccchhhhHHHHHHHh-cCCeEEEEEcCCCChH---------HHHHHhcCCCCCCCCcEEEEEeCCchhhhh-----
Q 004686 76 RDLIIWDVHKGINLIRWRL-CRKRVLVILDDVDQLE---------QLQALVGNHDWFGFGSRIIITSRDEHVLKS----- 140 (737)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~l-~~~~~LlilDd~~~~~---------~~~~l~~~l~~~~~~~~iliTtR~~~~~~~----- 140 (737)
.-..+.+..+..+.+.+ +.++.+|++|+++... +...++.+... ...-++|-+|...+....
T Consensus 251 --~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 251 --KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred --CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHHhcCH
Confidence 00112333333343333 3467999999984331 12233322211 123456666665443221
Q ss_pred --cCcccEEEcCCCChhhHHHHHhh
Q 004686 141 --HGVTNTYKVRGLDYVEALQLFHL 163 (737)
Q Consensus 141 --~~~~~~~~l~~l~~~~~~~l~~~ 163 (737)
.+....+++...+.++...+++.
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHH
Confidence 12234678888899998888864
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.29 E-value=0.00083 Score=67.42 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=57.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-+.++|+.|+|||.||..+++.+.+.--.+.|+. + .+++.++...... .. .....+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~------~~l~~~lk~~~~~------~~----~~~~l~~ 214 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----F------PEFIRELKNSISD------GS----VKEKIDA 214 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----H------HHHHHHHHHHHhc------Cc----HHHHHHH
Confidence 3467999999999999999999998765444455654 2 2344444443210 01 2222333
Q ss_pred hcCCeEEEEEcCCC--ChHHHHH--HhcCCCC--CCCCcEEEEEeCC
Q 004686 94 LCRKRVLVILDDVD--QLEQLQA--LVGNHDW--FGFGSRIIITSRD 134 (737)
Q Consensus 94 l~~~~~LlilDd~~--~~~~~~~--l~~~l~~--~~~~~~iliTtR~ 134 (737)
+ .+-=||||||+. ...+|.. ++..+.+ +..+-.+++||--
T Consensus 215 l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 215 V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3 355689999984 2333432 3333211 1234557777764
No 231
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=2.1e-05 Score=86.49 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=20.6
Q ss_pred CCCCcEEeccCcccccc--ccccccCccccceecccc
Q 004686 445 VPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 445 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 479 (737)
++.|+.|.+.++..... +-.....+++|+.|+++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56666666666654443 223445666666666665
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.27 E-value=0.001 Score=62.16 Aligned_cols=88 Identities=19% Similarity=0.148 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhccc-ChHHHHHHHHHHHhhcccccc--cchhhhHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLII--WDVHKGINLIR 91 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~l~ 91 (737)
+++|.++|+.|+||||.+.+++.+.+.+-..+..++ ....+ ...+-++.+++.++.+..... .+..+......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis----~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS----ADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----ESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec----CCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 379999999999999999999987665533444444 22222 333445666777665432211 12222222222
Q ss_pred HHhc-CCeEEEEEcCC
Q 004686 92 WRLC-RKRVLVILDDV 106 (737)
Q Consensus 92 ~~l~-~~~~LlilDd~ 106 (737)
+..+ ++.=+|++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 2222 23347777755
No 233
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.27 E-value=0.001 Score=70.66 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=38.2
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.|.+.+.++-+.-.++.|.|++|+||||++.+++......-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566667666666789999999999999999999987654444567765
No 234
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.26 E-value=0.0022 Score=62.26 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.|.+++.++-+.-..+.|.|++|+|||+++.+++.+....-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566677666667789999999999999999998875444455677775
No 235
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.25 E-value=0.0089 Score=60.35 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=34.3
Q ss_pred EEEcCCCChhhHHHHHhhhccCCCCCC-hHHHHHHHHHHHHhCCCchHHH
Q 004686 146 TYKVRGLDYVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 146 ~~~l~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
++++++++++|+..++.-....+.... ...+...+++.-..+|+|.-+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 689999999999999876653333222 3344556677777799997553
No 236
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.24 E-value=0.0014 Score=70.38 Aligned_cols=48 Identities=35% Similarity=0.573 Sum_probs=36.7
Q ss_pred ChhhHHhhhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 1 MEKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 1 ~~~l~~~l~~---~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++++..||.. +....++++++||+|+||||.++.++... .|+.+-|..
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3678888884 23345799999999999999999999975 455555643
No 237
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0031 Score=72.96 Aligned_cols=131 Identities=8% Similarity=0.017 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
..+.++|++|+|||++|+.++.++.+.. ...+|..... .+.... ....+.+..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~---------~l~ag~---------~~~g~~e~~lk~ 261 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG---------ALVAGA---------KYRGEFEERLKG 261 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh---------hhhhcc---------chhhhhHHHHHH
Confidence 3567999999999999999999765421 2233322111 111000 000112222332
Q ss_pred HHHHh--cCCeEEEEEcCCCChH---------HHHHHhcCCCCCCCCcEEEEEeCCchhhh------hc-CcccEEEcCC
Q 004686 90 IRWRL--CRKRVLVILDDVDQLE---------QLQALVGNHDWFGFGSRIIITSRDEHVLK------SH-GVTNTYKVRG 151 (737)
Q Consensus 90 l~~~l--~~~~~LlilDd~~~~~---------~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~~-~~~~~~~l~~ 151 (737)
+.+.+ .+++.+|++|+++... +...++-+... ...-++|-+|...+... .. +....+.+..
T Consensus 262 ~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~e 340 (857)
T PRK10865 262 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAE 340 (857)
T ss_pred HHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCC
Confidence 32222 2578999999986552 22333332221 12335555555443311 11 2222566777
Q ss_pred CChhhHHHHHhhhc
Q 004686 152 LDYVEALQLFHLKV 165 (737)
Q Consensus 152 l~~~~~~~l~~~~~ 165 (737)
-+.++..++++...
T Consensus 341 P~~~~~~~iL~~l~ 354 (857)
T PRK10865 341 PSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHHHHHHh
Confidence 78899999886543
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00068 Score=60.88 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=57.9
Q ss_pred CcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcc-cCcccCCCCcccEEEcc
Q 004686 448 LERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVG 526 (737)
Q Consensus 448 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~ 526 (737)
...+|+++|.+... ..|..+++|.+|.+++|+++..-|.--..+++|+.|.+.+|++... -..-+..+|.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 45556655543221 2345556666666666554443333333455666777766655321 12235567778888877
Q ss_pred CccCcccC----cccccCCCCcEEEccCC
Q 004686 527 GTAIRQIP----PSIVQLVNLKIFSLHGC 551 (737)
Q Consensus 527 ~~~~~~l~----~~~~~l~~L~~L~l~~~ 551 (737)
+|.+++.. ..+..+++|+.||+.+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 77776433 23566788888887653
No 239
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0027 Score=58.77 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.-|.++|.-|.|||+|++++...+.+.+-.-+-|. -..-. +.+..++.++. .
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~dl~----------------------~Lp~l~~~Lr~--~ 137 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KEDLA----------------------TLPDLVELLRA--R 137 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHHHh----------------------hHHHHHHHHhc--C
Confidence 57899999999999999999998877665544443 11001 11111222221 2
Q ss_pred CCeEEEEEcCC--CCh-HHHHHHhcCCC---CCCCCcEEEEEeCCc
Q 004686 96 RKRVLVILDDV--DQL-EQLQALVGNHD---WFGFGSRIIITSRDE 135 (737)
Q Consensus 96 ~~~~LlilDd~--~~~-~~~~~l~~~l~---~~~~~~~iliTtR~~ 135 (737)
+++|+|.+||. ++. +.+.++...+- ...+.+.++..|-++
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 68999999998 222 33666655553 335666777666664
No 240
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.18 E-value=0.0016 Score=69.36 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=38.2
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.|.++|..+-+.-.++.|.|++|+||||++.+++......-..++|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566667666667789999999999999999999886654434577765
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.002 Score=58.83 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++.|+|++|+|||++++.++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999997765445566665
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0011 Score=64.69 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+..-++++|++|+|||.||.++++++.+.--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4457999999999999999999998774444556655
No 243
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.0004 Score=63.18 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh---cccCceEE
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK---DQFEASSF 48 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~---~~f~~~~~ 48 (737)
+.|.|.|++|+||||+|++++.... -++|...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 4689999999999999999999753 23555554
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.14 E-value=0.00045 Score=61.04 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004686 18 IGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~ 39 (737)
|.++|++|+|||++|+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 245
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.13 E-value=0.0026 Score=61.31 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 68 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 68 (737)
.+.+.+..+-+.-.++.|.|++|+|||+++.+++....+.-..++|+. ...+..++.+++
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~------~e~~~~~~~~~~ 71 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS------TQLTTTEFIKQM 71 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe------CCCCHHHHHHHH
Confidence 345556555566679999999999999999888775533334556654 244556666665
No 246
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0027 Score=67.89 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=77.6
Q ss_pred hhhHHhhh----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHH---HHHHHHHhh
Q 004686 2 EKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQ---EQLLSEVLM 74 (737)
Q Consensus 2 ~~l~~~l~----~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~i~~~l~~ 74 (737)
+||.+.+. .++.+-+++.++||+|||||.+++.+|..+..+|..... ..-.++.+|- +....
T Consensus 421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv-------GG~tDvAeIkGHRRTYVG---- 489 (906)
T KOG2004|consen 421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV-------GGMTDVAEIKGHRRTYVG---- 489 (906)
T ss_pred HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec-------cccccHHhhcccceeeec----
Confidence 34555544 234455899999999999999999999987655432111 1111222111 11111
Q ss_pred cccccccchhhhHHHHHHHhcCCeEEEEEcCCCChH------HHHHHhcCCC------------CCC-CCcEEE--EEeC
Q 004686 75 ERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE------QLQALVGNHD------------WFG-FGSRII--ITSR 133 (737)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~------~~~~l~~~l~------------~~~-~~~~il--iTtR 133 (737)
.++-.+-+..+..+...-|+.+|.++... .-.+++..+- +.+ .=|+|+ .|.-
T Consensus 490 -------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 490 -------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred -------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 11112222333344567899999986542 2333333331 111 123444 3332
Q ss_pred Cc-hhhh-hcCcccEEEcCCCChhhHHHHHhhhc
Q 004686 134 DE-HVLK-SHGVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 134 ~~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
.- .+.. .......|++.|...+|-..+-.++.
T Consensus 563 ~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 563 VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 21 1111 12234589999999999888776654
No 247
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.12 E-value=0.0049 Score=70.73 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH-HH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-WR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~ 93 (737)
.+-|+++|++|+|||++|+.++......| +.+.. . ++..... ......+..+. ..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~----~------~i~~~~~-----------g~~~~~l~~lf~~a 267 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING----P------EIMSKYY-----------GESEERLREIFKEA 267 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec----H------HHhcccc-----------cHHHHHHHHHHHHH
Confidence 46799999999999999999998764332 22221 0 0000000 00111122222 22
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCCCCC-CCCcEEEE-EeCCc-hhhhh----cCcccEEEcCCCC
Q 004686 94 LCRKRVLVILDDVDQLE-------------QLQALVGNHDWF-GFGSRIII-TSRDE-HVLKS----HGVTNTYKVRGLD 153 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------------~~~~l~~~l~~~-~~~~~ili-TtR~~-~~~~~----~~~~~~~~l~~l~ 153 (737)
....+.+|++|+++... ....+...+... ..+..+++ ||... .+... .+....+.+...+
T Consensus 268 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 268 EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcC
Confidence 23566899999985431 122333322211 23334444 44332 12111 1234467888888
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
.++..+++.......... .....+.+++.+.|.-
T Consensus 348 ~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 348 KRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCC
Confidence 888889888654221111 1123566777787765
No 248
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.12 E-value=0.00044 Score=64.17 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH-H-hcccCceEEEeecchhhccc-----ChH----HHHHHHHHHHhhcccccccchh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT-L-KDQFEASSFLANVREVSVTR-----GLV----PLQEQLLSEVLMERDLIIWDVH 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~-~-~~~f~~~~~~~~~~~~~~~~-----~~~----~~~~~i~~~l~~~~~~~~~~~~ 84 (737)
.++.+.|++|+|||.||...+.+ + ...|+.+++.....++...- +.. ...+-+...+..-. ..
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~------~~ 93 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF------GK 93 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-------T
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh------Ch
Confidence 49999999999999999999863 3 35677777764322111100 000 01111111111100 01
Q ss_pred hhHHHHH----------HHhcCC---eEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 85 KGINLIR----------WRLCRK---RVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 85 ~~~~~l~----------~~l~~~---~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
...+.+. .+++++ ..+||+|++++.. ++..++... +.+|+++++--..
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 1122222 233443 4699999998764 577776664 6899999987754
No 249
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.11 E-value=0.0013 Score=71.15 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=67.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc---
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--- 78 (737)
+.|.++|.++-+.-.++.|.|++|+|||+++.++++...+.-+.++|+. ..++..++.++. +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s------~eEs~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA------YEESRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE------eeCCHHHHHHHH-HHcCCChHHHhh
Confidence 4577778887788899999999999999999999997655556677754 467777777765 333322111
Q ss_pred -----------cccchhhhHHHHHHHhcC-CeEEEEEcCCCC
Q 004686 79 -----------IIWDVHKGINLIRWRLCR-KRVLVILDDVDQ 108 (737)
Q Consensus 79 -----------~~~~~~~~~~~l~~~l~~-~~~LlilDd~~~ 108 (737)
.....++.+..+.+.++. +.-.+|+|.+..
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 001224455556655543 455789998754
No 250
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00064 Score=58.72 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEE
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFL 49 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~ 49 (737)
.-.|+|+|++|+||||+++++++.+++. |..+-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 4579999999999999999999987655 6654443
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.0056 Score=71.17 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
..+.++|++|+|||++|+.+++++.+.+ ...+|... +..+.... .-..+.+..+..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~---------~~~l~a~~---------~~~g~~e~~l~~ 256 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD---------MGALIAGA---------KYRGEFEERLKA 256 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee---------HHHHhhcc---------hhhhhHHHHHHH
Confidence 4566899999999999999999875432 22333321 11111000 000122233333
Q ss_pred HHHHhc--CCeEEEEEcCCCChH---------HHHHHhcCCCCCCCCcEEEEEeCCchhhhh-------cCcccEEEcCC
Q 004686 90 IRWRLC--RKRVLVILDDVDQLE---------QLQALVGNHDWFGFGSRIIITSRDEHVLKS-------HGVTNTYKVRG 151 (737)
Q Consensus 90 l~~~l~--~~~~LlilDd~~~~~---------~~~~l~~~l~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~~ 151 (737)
+.+.+. +++.+|++|+++... +...++.+....+ .-.+|-+|...+.... .+....+.++.
T Consensus 257 ~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~ 335 (852)
T TIGR03346 257 VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDE 335 (852)
T ss_pred HHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCC
Confidence 333332 468999999986442 1223332222112 2345555554332111 12234688998
Q ss_pred CChhhHHHHHhhh
Q 004686 152 LDYVEALQLFHLK 164 (737)
Q Consensus 152 l~~~~~~~l~~~~ 164 (737)
.+.++..++++..
T Consensus 336 p~~~~~~~iL~~~ 348 (852)
T TIGR03346 336 PTVEDTISILRGL 348 (852)
T ss_pred CCHHHHHHHHHHH
Confidence 8999999998765
No 252
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0033 Score=64.91 Aligned_cols=128 Identities=20% Similarity=0.114 Sum_probs=72.0
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc---------------------CceEEEeecchhhcccC-
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLANVREVSVTRG- 60 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f---------------------~~~~~~~~~~~~~~~~~- 60 (737)
++..+..........+.++||+|+|||++|..++..+.... ..+..+. .+....
T Consensus 12 ~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~~~~ 87 (325)
T COG0470 12 RLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDLRKI 87 (325)
T ss_pred HHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----ccccCCC
Confidence 34455554333344699999999999999999999764322 1222222 111111
Q ss_pred --hHHHHHHHHHHHhhcccccccchhhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCc-
Q 004686 61 --LVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE- 135 (737)
Q Consensus 61 --~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~- 135 (737)
..+.++++.+....... .++.-++|+|+++.+.. -.+++..+-..+....++++|...
T Consensus 88 ~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 88 DIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred cchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 22333333333211110 35678999999987753 556666655556777888777742
Q ss_pred hhhhhc-CcccEEEcCC
Q 004686 136 HVLKSH-GVTNTYKVRG 151 (737)
Q Consensus 136 ~~~~~~-~~~~~~~l~~ 151 (737)
.+.... +....+++++
T Consensus 151 ~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 151 KILPTIRSRCQRIRFKP 167 (325)
T ss_pred hccchhhhcceeeecCC
Confidence 222211 2233566666
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.004 Score=65.45 Aligned_cols=37 Identities=30% Similarity=0.298 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.+.+|.++|+.|+||||++.+++..+++.-..+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 4689999999999999999999987765433344443
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.0037 Score=63.37 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhHHHHHhhh
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~ 164 (737)
+++-++|+|+++..+ .-..++..+.....+..+|++|.+.. +... .+.-..+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 345566778886553 23333333322234566777777643 3222 122346889999999999888754
No 255
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.016 Score=59.98 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChH--HHHHHHHHHHhhcccccccchhhhHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV--PLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
......+++.|++|+|||+||.+++.. ..|..+-.+. ....-.+. +-+..|- ..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~i~------------------k~ 590 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAHIK------------------KI 590 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHHHH------------------HH
Confidence 345688999999999999999999874 4676554443 11111111 1111121 12
Q ss_pred HHHHhcCCeEEEEEcCCCChHHHH------------HHhcCCCCC-CCCcEEE--EEeCCchhhhhcC----cccEEEcC
Q 004686 90 IRWRLCRKRVLVILDDVDQLEQLQ------------ALVGNHDWF-GFGSRII--ITSRDEHVLKSHG----VTNTYKVR 150 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~~~~~------------~l~~~l~~~-~~~~~il--iTtR~~~~~~~~~----~~~~~~l~ 150 (737)
.....+..--.||+||++..-+|- +++..+... +.|-|.+ -||-.+.+.+.+. ....+.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 223345666789999997665433 333333322 3444433 3444445555553 23468888
Q ss_pred CCCh-hhHHHHHhh
Q 004686 151 GLDY-VEALQLFHL 163 (737)
Q Consensus 151 ~l~~-~~~~~l~~~ 163 (737)
.++. ++..+.+..
T Consensus 671 nl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEE 684 (744)
T ss_pred ccCchHHHHHHHHH
Confidence 8877 666666654
No 256
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.0027 Score=63.97 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=43.8
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh--c----ccCceEEEeecchhhcccChHHHHHHHHHHHh
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~--~----~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 73 (737)
+.|.++|.++-+.-+++-|+|++|+|||+++.+++.... . .-..++|++ .....+..++ .++++.++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi-~~~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRI-RAIAERFG 155 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHH-HHHHHHcC
Confidence 456677777777778999999999999999998875332 1 123577876 3333334443 34555543
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.0046 Score=55.91 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----c-c--ccchhhhH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----L-I--IWDVHKGI 87 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~-~--~~~~~~~~ 87 (737)
...+.++|+.|+||+++|..++..+-..-.... . +.... .++.+......+.. . . ....++ +
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--~----c~~c~----~c~~~~~~~~~d~~~~~~~~~~~~i~i~~-i 87 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNED--P----CGECR----SCRRIEEGNHPDFIIIKPDKKKKSIKIDQ-I 87 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--------SSSH----HHHHHHTT-CTTEEEEETTTSSSSBSHHH-H
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--C----CCCCH----HHHHHHhccCcceEEEecccccchhhHHH-H
Confidence 457899999999999999999996522111000 0 11111 01111110000000 0 0 001111 1
Q ss_pred HHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhh-hcCcccEEEcCCCC
Q 004686 88 NLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLK-SHGVTNTYKVRGLD 153 (737)
Q Consensus 88 ~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~-~~~~~~~~~l~~l~ 153 (737)
..+.+.+ .++.=++|+|+++.+. ...+++..+-+-+.+..+|++|++.. +.. ..+....+.+++++
T Consensus 88 r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 88 REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 1222222 2456799999997663 46666666555567889998888753 222 12233356666543
No 258
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0031 Score=59.31 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+...|+|+|++|+|||++|..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999999753
No 259
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.00056 Score=58.76 Aligned_cols=23 Identities=52% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|+|.|++|+||||+|++++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0062 Score=61.89 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++|+++|++|+||||++.+++..+...-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999987654433444544
No 261
>PRK06762 hypothetical protein; Provisional
Probab=97.03 E-value=0.0055 Score=55.99 Aligned_cols=25 Identities=48% Similarity=0.553 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|+|++|+||||+|++++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 262
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.02 E-value=0.0011 Score=60.22 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~ 50 (737)
.++.+.||.|+|||.+|+.+++.+. +.....+.++
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 5899999999999999999999887 5666666666
No 263
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.0024 Score=60.04 Aligned_cols=110 Identities=12% Similarity=0.158 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.+|.|+|+.|+||||++..++..+.......++.... +. +....-...+..+ . ....+.....+.+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~---E~~~~~~~~~i~q---~--~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI---EFVHESKRSLINQ---R--EVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc---cccccCccceeee---c--ccCCCccCHHHHHHHHhc
Confidence 3799999999999999999888765444444443210 00 0000000001100 0 000112234455666666
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchh
Q 004686 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 137 (737)
..+=++++|++.+.+.+....... ..|..++.|+.....
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 667799999998777655443322 346667777775533
No 264
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0031 Score=71.18 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=74.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
++.+.|.... ..-+.++|++|+|||++|+.++.++...- +..+|.. +..+++. ..
T Consensus 197 ~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~lla---G~----- 257 (758)
T PRK11034 197 RAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGSLLA---GT----- 257 (758)
T ss_pred HHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHHHhc---cc-----
Confidence 3444444422 23457899999999999999998653321 2233321 1111110 00
Q ss_pred cccccchhhhHHHHHHHh-cCCeEEEEEcCCCCh----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhhh-----
Q 004686 77 DLIIWDVHKGINLIRWRL-CRKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKS----- 140 (737)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l-~~~~~LlilDd~~~~----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~----- 140 (737)
.-..+.+.....+.+.+ +.++.+|++|+++.. .+...++.++.. ....++|-+|...+..+.
T Consensus 258 -~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~~D~ 335 (758)
T PRK11034 258 -KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_pred -chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhhccH
Confidence 00112333333333333 346789999998643 123323332221 123345555554332111
Q ss_pred --cCcccEEEcCCCChhhHHHHHhhh
Q 004686 141 --HGVTNTYKVRGLDYVEALQLFHLK 164 (737)
Q Consensus 141 --~~~~~~~~l~~l~~~~~~~l~~~~ 164 (737)
.+....+++++.+.+++.++++..
T Consensus 336 AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 336 ALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 122347999999999999999864
No 265
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.99 E-value=0.00094 Score=58.93 Aligned_cols=36 Identities=33% Similarity=0.301 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+|+++|.+|+||||+|+++..++.+....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999887766666654
No 266
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.99 E-value=0.017 Score=62.09 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=84.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh-----cccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK-----DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (737)
....+.|.|.+|+|||+.+..+...++ +.-....|+-. ..-.-....++-..|..++..... .+...++
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI--Ngm~l~~~~~~Y~~I~~~lsg~~~----~~~~al~ 494 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI--NGLRLASPREIYEKIWEALSGERV----TWDAALE 494 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE--cceeecCHHHHHHHHHHhcccCcc----cHHHHHH
Confidence 346999999999999999999998543 12222222220 122334567777777777654433 3334444
Q ss_pred HHHHHhc-----CCeEEEEEcCCCChHH------HHHHhcCCCCCCCCcEEEEEeC-Cc-----h-----hhhhcCcccE
Q 004686 89 LIRWRLC-----RKRVLVILDDVDQLEQ------LQALVGNHDWFGFGSRIIITSR-DE-----H-----VLKSHGVTNT 146 (737)
Q Consensus 89 ~l~~~l~-----~~~~LlilDd~~~~~~------~~~l~~~l~~~~~~~~iliTtR-~~-----~-----~~~~~~~~~~ 146 (737)
.+..+.. .+.+++++|+++..-. +.-|-++- .++++++|.+= +. + +.... +...
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt---~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl-g~tR 570 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT---LKNSKLVVIAIANTMDLPERLLMNRVSSRL-GLTR 570 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc---CCCCceEEEEecccccCHHHHhccchhhhc-ccee
Confidence 4444443 3569999999865522 22222221 35666554432 21 1 11111 2336
Q ss_pred EEcCCCChhhHHHHHhhhccC
Q 004686 147 YKVRGLDYVEALQLFHLKVSN 167 (737)
Q Consensus 147 ~~l~~l~~~~~~~l~~~~~~~ 167 (737)
+...|.+.+|..+++..+..+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcc
Confidence 788899999999999888743
No 267
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.0043 Score=62.80 Aligned_cols=36 Identities=28% Similarity=0.191 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
..++|.++|++|+||||++.+++..+++.-..++++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li 174 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA 174 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 368999999999999999999998766542234444
No 268
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.97 E-value=0.0017 Score=60.03 Aligned_cols=37 Identities=41% Similarity=0.603 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...+|++.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3469999999999999999999998877666666653
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.01 Score=63.65 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
..=|.++|++|+|||-||.+++.... .-++. +.. + +++...+.+ ..+.......+.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~-----~~fis----vKG---P-ElL~KyIGa----------SEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSN-----LRFIS----VKG---P-ELLSKYIGA----------SEQNVRDLFERAQ 757 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCC-----eeEEE----ecC---H-HHHHHHhcc----------cHHHHHHHHHHhh
Confidence 35689999999999999999998642 22444 221 1 222222222 1222222333334
Q ss_pred cCCeEEEEEcCCCCh-------------HHHHHHhcCCC--CCCCCcEEE-EEeCCchhhh----hcCcccEEEcCCCCh
Q 004686 95 CRKRVLVILDDVDQL-------------EQLQALVGNHD--WFGFGSRII-ITSRDEHVLK----SHGVTNTYKVRGLDY 154 (737)
Q Consensus 95 ~~~~~LlilDd~~~~-------------~~~~~l~~~l~--~~~~~~~il-iTtR~~~~~~----~~~~~~~~~l~~l~~ 154 (737)
..+++++.+|+++.. .....++..+- ..-.|.-|+ .|||++-+.. .-+.++.+.=+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 579999999998544 23667766654 122455555 5667643322 223344445555567
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 191 (737)
.+..+++...... ... ......+.++.+++|..-
T Consensus 838 ~eRl~il~~ls~s--~~~-~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 838 PERLEILQVLSNS--LLK-DTDVDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHHHHHhhc--cCC-ccccchHHHhhhcCCCch
Confidence 7788888765521 111 112345678888888764
No 270
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.046 Score=51.98 Aligned_cols=190 Identities=14% Similarity=0.167 Sum_probs=106.6
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc------ccCceEEEeecch-----------------hhcccChHHHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLANVRE-----------------VSVTRGLVPLQEQL 68 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~------~f~~~~~~~~~~~-----------------~~~~~~~~~~~~~i 68 (737)
..+.+-..++||+|.||-|.+..+.+++-+ +-+...|...... ......-+-+.+++
T Consensus 31 ~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 31 TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHH
Confidence 345788999999999999999888875421 1122233221110 00011233456677
Q ss_pred HHHHhhcccccccchhhhHHHHHHHhcCCeE-EEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc--hhhhhcCc
Q 004686 69 LSEVLMERDLIIWDVHKGINLIRWRLCRKRV-LVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE--HVLKSHGV 143 (737)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~--~~~~~~~~ 143 (737)
++++.+...- . .-..+.| ++|+-.++.. ++-.++....-.-...+++|+...+. .+...-+.
T Consensus 111 lKevAQt~qi------------e-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSR 177 (351)
T KOG2035|consen 111 LKEVAQTQQI------------E-TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSR 177 (351)
T ss_pred HHHHHhhcch------------h-hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhh
Confidence 7765443221 1 1113344 5666666544 22333333322224677777665542 23332223
Q ss_pred ccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcC-----------CCHHHHHHHH
Q 004686 144 TNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-----------RSVEEWKSAL 212 (737)
Q Consensus 144 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~-----------~~~~~~~~~~ 212 (737)
-..+++...+++|....+.+-+..+....| .+.+.+|+++++|+-.-...+....+. ...-+|.-++
T Consensus 178 Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i 255 (351)
T KOG2035|consen 178 CLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYI 255 (351)
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHH
Confidence 336899999999999999887744433333 678999999999986544444333322 1234687776
Q ss_pred HHHh
Q 004686 213 NRLQ 216 (737)
Q Consensus 213 ~~~~ 216 (737)
....
T Consensus 256 ~e~a 259 (351)
T KOG2035|consen 256 QEIA 259 (351)
T ss_pred HHHH
Confidence 6543
No 271
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.95 E-value=0.0038 Score=61.50 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=33.2
Q ss_pred hcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 9 EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 9 ~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.++-+.-.++.|.|++|+|||+++.+++......-..++|+.
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 355566789999999999999999999885544445677776
No 272
>PRK07667 uridine kinase; Provisional
Probab=96.94 E-value=0.0016 Score=60.95 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=34.3
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+.|.+.+....+...+|+|.|++|+||||+|+.++..+++.
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45666777777777999999999999999999999977654
No 273
>PRK07261 topology modulation protein; Provisional
Probab=96.91 E-value=0.0042 Score=56.83 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|.|+|++|+||||+|++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 274
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.90 E-value=0.0042 Score=63.36 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=36.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~ 50 (737)
.+.+++.++-+.-.++.|+|++|+|||+++.+++...... -..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4556666666777899999999999999999998754321 13677876
No 275
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.90 E-value=0.0068 Score=58.53 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.8
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+.+.+.++-+.-.++.|.|++|+|||+++.+++....+.-..++|+.
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4566777777667789999999999999999999885433445566765
No 276
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.89 E-value=0.0033 Score=61.16 Aligned_cols=92 Identities=21% Similarity=0.154 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhh-------cccccccch----h
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-------ERDLIIWDV----H 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~----~ 84 (737)
+.++|.|.+|+|||+|++.++.+.+.+|+..+++... -.+...+.++.+++...-.. ...+.+... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~i--Ger~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGV--GERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEe--ccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5899999999999999999999887777655444321 12234455555555443111 111111100 0
Q ss_pred hhHHHHHHHh---cCCeEEEEEcCCCCh
Q 004686 85 KGINLIRWRL---CRKRVLVILDDVDQL 109 (737)
Q Consensus 85 ~~~~~l~~~l---~~~~~LlilDd~~~~ 109 (737)
...-.+-+++ ++++.|+++||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1111122333 489999999998443
No 277
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.88 E-value=0.0054 Score=62.53 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=36.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~ 50 (737)
.+.++|.++-+.-.++.|+|++|+|||+++.+++...... -..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 4556666666677899999999999999999998865321 12678876
No 278
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.88 E-value=0.0064 Score=54.34 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
-..++|+|++|.||||+.+.++...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3689999999999999999999743
No 279
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.87 E-value=0.0023 Score=63.31 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=48.7
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (737)
-+.+++.++-+.-++++|+|.+|+|||+++.+++.+..+....++|+. ..++..++.+...+
T Consensus 11 glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs------~~e~~~~l~~~~~~ 72 (260)
T COG0467 11 GLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS------TEESPEELLENARS 72 (260)
T ss_pred chHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE------ecCCHHHHHHHHHH
Confidence 456677777788899999999999999999999998777788889976 24555555555543
No 280
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.87 E-value=0.0021 Score=62.92 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=40.4
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh--c---c-cCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D---Q-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~--~---~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
+.|.++|.++-+.-.+.=|+|++|+|||.++..++-.+. . . -..++|++ .....+... +.+|++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~R-l~~i~~~ 95 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPER-LQQIAER 95 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHH-HHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHH-HHHHhhc
Confidence 345666665544557999999999999999998876432 1 1 23467776 333333333 3445554
No 281
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.86 E-value=0.014 Score=65.49 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
+-|.++|++|+|||++|+.++.+....| +.+. .+ ++....... ........+....+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~~------~~~~~~~g~----------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----GS------DFVEMFVGV----------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----hH------HhHHhhhcc----------cHHHHHHHHHHHHh
Confidence 4599999999999999999998764332 2222 11 111100000 00111111222233
Q ss_pred CCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCcccEEEcCCC
Q 004686 96 RKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKVRGL 152 (737)
Q Consensus 96 ~~~~LlilDd~~~~~----------------~~~~l~~~l~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l 152 (737)
..+.+|++|+++... .+..++..+... ..+..+|.||....... .-+.+..+.++.-
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 467899999986541 133333222211 23445555666543222 1234567888888
Q ss_pred ChhhHHHHHhhhcc
Q 004686 153 DYVEALQLFHLKVS 166 (737)
Q Consensus 153 ~~~~~~~l~~~~~~ 166 (737)
+.++..+++.....
T Consensus 323 d~~~R~~Il~~~~~ 336 (644)
T PRK10733 323 DVRGREQILKVHMR 336 (644)
T ss_pred CHHHHHHHHHHHhh
Confidence 88888888887663
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0096 Score=61.58 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998654
No 283
>PRK06696 uridine kinase; Validated
Probab=96.85 E-value=0.0017 Score=62.55 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=32.9
Q ss_pred hhhHHhhhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 2 EKMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 2 ~~l~~~l~~-~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
++|.+.+.. ..+...+|+|.|++|+||||+|++++..+...
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455666653 45568999999999999999999999987654
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0098 Score=65.10 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH-
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR- 91 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~- 91 (737)
...+.+.++||+|+|||.+|++++...+..|-.+..- ++....+.+ .+..+..+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~vGe-----------sek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWVGE-----------SEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhccccch-----------HHHHHHHHHH
Confidence 3456899999999999999999999665443322221 111111111 111122222
Q ss_pred HHhcCCeEEEEEcCCCCh-------------HHHHHHhcCCCCCC--CCcEEEEEeCCchhhh-----hcCcccEEEcCC
Q 004686 92 WRLCRKRVLVILDDVDQL-------------EQLQALVGNHDWFG--FGSRIIITSRDEHVLK-----SHGVTNTYKVRG 151 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~-------------~~~~~l~~~l~~~~--~~~~iliTtR~~~~~~-----~~~~~~~~~l~~ 151 (737)
...+..+.+|.+|+++.. .....++..+.... .+..+|-||-.+.... ..+.+..+.++.
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 223478899999998433 12444444443222 2333343333322211 124456889999
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG 188 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G 188 (737)
-+.++..++|.....+.... ....-..+.+++.+.|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999999999887432322 1122234455555555
No 285
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.83 E-value=0.0039 Score=63.27 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=43.6
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh--c---c-cCceEEEeecchhhcccChHHHHHHHHHHHh
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D---Q-FEASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~--~---~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 73 (737)
+.|.++|.++-+.-.+.-|+|++|+|||+++..++-..+ . . -..++|++ ........++ .++++.++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl-~~ia~~~g 185 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRI-VPIAERFG 185 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHH-HHHHHHcC
Confidence 346666776667778999999999999999998875332 1 1 24578876 3333344443 34455543
No 286
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.83 E-value=0.0058 Score=54.91 Aligned_cols=119 Identities=17% Similarity=0.014 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHH---Hhhc--cc-ccc----cchhh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE---VLME--RD-LII----WDVHK 85 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~---l~~~--~~-~~~----~~~~~ 85 (737)
..|-|++..|.||||.|...+.+...+--.+.++.-.. -.....-...++.+.-. .+.. .. ... ....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK-g~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIK-GAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec-CCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 47888888999999999999986554433343332100 11001111122221000 0000 00 000 11222
Q ss_pred hHHHHHHHhcCCe-EEEEEcCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 86 GINLIRWRLCRKR-VLVILDDVDQL-----EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 86 ~~~~l~~~l~~~~-~LlilDd~~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
..+...+.+...+ =++|||.+-.. -+.+.+...+...+++.-+|+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3444455554444 59999987322 22333443333446778999999985
No 287
>PRK05973 replicative DNA helicase; Provisional
Probab=96.82 E-value=0.0047 Score=59.04 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=38.8
Q ss_pred hhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHH
Q 004686 8 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL 69 (737)
Q Consensus 8 l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (737)
+.++-+.-.+++|.|++|+|||+++.+++......-..++|+. ...+..++.+.+.
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS------lEes~~~i~~R~~ 112 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT------LEYTEQDVRDRLR 112 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE------EeCCHHHHHHHHH
Confidence 3344455579999999999999999999886544445566654 3455556665544
No 288
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.82 E-value=0.01 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+|.|+|.+|+||||+|+.++..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999764
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.81 E-value=0.013 Score=57.24 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=79.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc---ccchhhhHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI---IWDVHKGINLIRW 92 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~l~~ 92 (737)
--|.+.||.|.|||.+.-....+ .+.+.....+....+.-.. -.-.++.|.+++....... ..+..+..+.+.+
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~--dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQT--DKIALKGITRQLALELNRIVKSFGSFTENLSKLLE 126 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchh--hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHH
Confidence 47889999999999999888777 4445444443322222111 1123445555544332222 2233333445555
Q ss_pred HhcC------CeEEEEEcCCCChH----H--HHHHhcCCC-CCCCCcEEEEEeCCc-------hhhhhcCcccEEEcCCC
Q 004686 93 RLCR------KRVLVILDDVDQLE----Q--LQALVGNHD-WFGFGSRIIITSRDE-------HVLKSHGVTNTYKVRGL 152 (737)
Q Consensus 93 ~l~~------~~~LlilDd~~~~~----~--~~~l~~~l~-~~~~~~~iliTtR~~-------~~~~~~~~~~~~~l~~l 152 (737)
.++. .++++|+|++|.-. + +-.+...-. ...|-+.|-+|||-. +|-..+....++-++.+
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~ 206 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSL 206 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCC
Confidence 5543 35889998874321 1 222222111 124667788999964 23223333334455667
Q ss_pred ChhhHHHHHhhhc
Q 004686 153 DYVEALQLFHLKV 165 (737)
Q Consensus 153 ~~~~~~~l~~~~~ 165 (737)
+-++-.+++++..
T Consensus 207 ~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 207 PLGDYVDLYRKLL 219 (408)
T ss_pred ChHHHHHHHHHHh
Confidence 7777777777654
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.80 E-value=0.0097 Score=54.79 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++.+.|++|+||||+++.++..+.+.-..++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999999999997765533344444
No 291
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0077 Score=62.27 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=66.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
++=|.++||+|.|||.||++++-+.. +-|+. ++..+ +.++. -..+ ...+..+....
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~----~sGSE-FdEm~----VGvG----------ArRVRdLF~aA 392 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFY----ASGSE-FDEMF----VGVG----------ARRVRDLFAAA 392 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccC-----CCeEe----ccccc-hhhhh----hccc----------HHHHHHHHHHH
Confidence 57799999999999999999997532 22222 11111 11111 1100 01123333333
Q ss_pred -cCCeEEEEEcCCCChH-------------HHHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCcccEEEcCCCC
Q 004686 95 -CRKRVLVILDDVDQLE-------------QLQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKVRGLD 153 (737)
Q Consensus 95 -~~~~~LlilDd~~~~~-------------~~~~l~~~l~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l~ 153 (737)
+.-+++|.+|+++... .+.+++.-+-.. +.|..||-+|..++..+ .-+.+.++.++.-+
T Consensus 393 k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PD 472 (752)
T KOG0734|consen 393 KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPD 472 (752)
T ss_pred HhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCC
Confidence 3458999999885441 144555444322 34544444444333222 12344466666556
Q ss_pred hhhHHHHHhhhc
Q 004686 154 YVEALQLFHLKV 165 (737)
Q Consensus 154 ~~~~~~l~~~~~ 165 (737)
..-..++|..+.
T Consensus 473 v~GR~eIL~~yl 484 (752)
T KOG0734|consen 473 VRGRTEILKLYL 484 (752)
T ss_pred cccHHHHHHHHH
Confidence 666666666554
No 292
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.79 E-value=0.027 Score=65.37 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.++.++|+.|+|||++|+.++..+.......+.+.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id 633 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 47899999999999999999986643333344444
No 293
>PRK10867 signal recognition particle protein; Provisional
Probab=96.78 E-value=0.0049 Score=64.62 Aligned_cols=29 Identities=38% Similarity=0.433 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
...+|.++|++|+||||++.+++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999999876554
No 294
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.76 E-value=0.012 Score=67.80 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..+++.++|++|+|||++|+.++..+...
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44689999999999999999999987543
No 295
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.011 Score=54.11 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=70.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc------
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER------ 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------ 76 (737)
+|.+-|-++-|....+.|.|.-|.|||.|.+++++..-+.-..+.++. +....++++.|+-.- .-+.
T Consensus 16 elDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs------Te~T~refi~qm~sl-~ydv~~~~l~ 88 (235)
T COG2874 16 ELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS------TELTVREFIKQMESL-SYDVSDFLLS 88 (235)
T ss_pred HHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE------echhHHHHHHHHHhc-CCCchHHHhc
Confidence 455666677777899999999999999999999996544433455533 344555555444321 1110
Q ss_pred -------------cccccchhhhHHHHHHHhcCC-eEEEEEcCCC------ChHHHHHHhcCCCCCCCCcE-EEEEeCC
Q 004686 77 -------------DLIIWDVHKGINLIRWRLCRK-RVLVILDDVD------QLEQLQALVGNHDWFGFGSR-IIITSRD 134 (737)
Q Consensus 77 -------------~~~~~~~~~~~~~l~~~l~~~-~~LlilDd~~------~~~~~~~l~~~l~~~~~~~~-iliTtR~ 134 (737)
...........+.+.+..+.+ .=++|+|.+. +..+...+...+.......| |++|...
T Consensus 89 G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 89 GRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred ceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 001112233344444444432 3588999862 23345555555554443444 4455443
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.76 E-value=0.0056 Score=54.31 Aligned_cols=23 Identities=52% Similarity=0.739 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|.+.|++|+||||+|++++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68999999999999999999754
No 297
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.022 Score=60.20 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh--cccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~--~~f~~~~~~~ 50 (737)
.+++.++|++|+||||++.+++.... .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36999999999999999999988654 3334455554
No 298
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.0099 Score=67.78 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=74.3
Q ss_pred hhHHhhhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc
Q 004686 3 KMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (737)
Q Consensus 3 ~l~~~l~~----~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 78 (737)
+|.+++.. ......++.++|++|+|||++++.++......|-. +. +....+..++...- +.....
T Consensus 333 ~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~----~~~~~d~~~i~g~~-~~~~g~--- 401 (784)
T PRK10787 333 RILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA----LGGVRDEAEIRGHR-RTYIGS--- 401 (784)
T ss_pred HHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE----cCCCCCHHHhccch-hccCCC---
Confidence 45555551 22234689999999999999999999876443321 11 11112221111110 010000
Q ss_pred cccchhhhHHHHHHHhcCCeEEEEEcCCCChHH------HHHHhcCCCCC--------------C-CCcEEEEEeCCchh
Q 004686 79 IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQ------LQALVGNHDWF--------------G-FGSRIIITSRDEHV 137 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~~------~~~l~~~l~~~--------------~-~~~~iliTtR~~~~ 137 (737)
. .....+.+.. .....-++++|+++.... .++++..+-.. . ....+|.|+.+..+
T Consensus 402 ~---~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i 477 (784)
T PRK10787 402 M---PGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNI 477 (784)
T ss_pred C---CcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCC
Confidence 0 0111222222 222345789999854421 34444433210 1 22334445544322
Q ss_pred hhhc-CcccEEEcCCCChhhHHHHHhhhc
Q 004686 138 LKSH-GVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 138 ~~~~-~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
.... .....+++.++++++-.++.++..
T Consensus 478 ~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 478 PAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 2221 223478899999999999887765
No 299
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.027 Score=61.20 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=80.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
..=|.++||+|+|||-+|+++|.+.. ..|+. +.. .++++....+ ..+...+...+.-
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs-----L~FlS----VKG----PELLNMYVGq----------SE~NVR~VFerAR 761 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS-----LNFLS----VKG----PELLNMYVGQ----------SEENVREVFERAR 761 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce-----eeEEe----ecC----HHHHHHHhcc----------hHHHHHHHHHHhh
Confidence 45689999999999999999998642 23444 222 1344444433 2333344444445
Q ss_pred cCCeEEEEEcCCCChH---------------HHHHHhcCCCCCC----CCcEEE-EEeCCc----hhhhhcCcccEEEcC
Q 004686 95 CRKRVLVILDDVDQLE---------------QLQALVGNHDWFG----FGSRII-ITSRDE----HVLKSHGVTNTYKVR 150 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~---------------~~~~l~~~l~~~~----~~~~il-iTtR~~----~~~~~~~~~~~~~l~ 150 (737)
..++++|.+|++|... ...++++-+-.+. .+.-|| -|.|++ .....-+.++.+.++
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEec
Confidence 5799999999885441 1444444443333 233333 344432 222233556677887
Q ss_pred CCChhhHHH-HHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 151 GLDYVEALQ-LFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 151 ~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
+=++++... ++++.... ...+.+ -...+|+++|...
T Consensus 842 ~~~d~esk~~vL~AlTrk--FkLded-VdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 842 PNEDAESKLRVLEALTRK--FKLDED-VDLVEIAKKCPPN 878 (953)
T ss_pred CCccHHHHHHHHHHHHHH--ccCCCC-cCHHHHHhhCCcC
Confidence 766655543 44332210 000000 1245677777554
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.69 E-value=0.011 Score=58.32 Aligned_cols=38 Identities=34% Similarity=0.388 Sum_probs=29.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...++|.++|++|+||||++.+++...++.-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987665434455554
No 301
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.69 E-value=0.012 Score=67.39 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.++.++||+|+|||.+|+.++..+
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHh
Confidence 468999999999999999999976
No 302
>PTZ00035 Rad51 protein; Provisional
Probab=96.68 E-value=0.0089 Score=60.99 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.|.++|.++-+.-.++.|+|++|+|||+++..++...
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 45667777777777899999999999999999988643
No 303
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.67 E-value=0.0001 Score=61.59 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=56.4
Q ss_pred eeeeecCCCCCCCCCC--CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccc
Q 004686 382 YLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTR 458 (737)
Q Consensus 382 ~L~~~~~~~~~l~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 458 (737)
..++++|.+.++|..+ .++.+++|++++|.|+.+|..+..++.|+.|+++.|.+...+..+..+.+|-+|+.-+|..
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 3344555556666554 4568888888888888888888888888888888888777766665677777777776543
No 304
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.67 E-value=0.0083 Score=54.76 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=61.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhccc---ChHHHHHHHH--HH--Hhhc--cc--cc---c
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR---GLVPLQEQLL--SE--VLME--RD--LI---I 80 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~~i~--~~--l~~~--~~--~~---~ 80 (737)
...|.|+|..|-||||.|...+.+...+-..+.++. +-... .=...++.+- .- .+.. .. .. .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ----FlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ----FIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE----EecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 368999999999999999999986554433444443 11111 1111121110 00 0000 00 00 0
Q ss_pred cchhhhHHHHHHHhcCC-eEEEEEcCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 81 WDVHKGINLIRWRLCRK-RVLVILDDVDQL-----EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 81 ~~~~~~~~~l~~~l~~~-~~LlilDd~~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.......+...+.+... -=++|||++-.. -+.+.+...+...+++.-||+|-|..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222344445555444 459999997332 22334444333446778999999985
No 305
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.65 E-value=0.0021 Score=62.26 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=60.2
Q ss_pred ChhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHHHhhccc--
Q 004686 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD-- 77 (737)
Q Consensus 1 ~~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-- 77 (737)
|+.|.+++.++-+.-.++.|.|++|+|||+++.+++.+.... -+.++|+. ..++..++.+++. .++.+..
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs------~ee~~~~l~~~~~-s~g~d~~~~ 77 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS------FEEPPEELIENMK-SFGWDLEEY 77 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE------SSS-HHHHHHHHH-TTTS-HHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE------ecCCHHHHHHHHH-HcCCcHHHH
Confidence 355677787777777899999999999999999988754444 56677765 2445555555543 2221110
Q ss_pred ------------cc-----ccchhhhHHHHHHHhcC-CeEEEEEcCC
Q 004686 78 ------------LI-----IWDVHKGINLIRWRLCR-KRVLVILDDV 106 (737)
Q Consensus 78 ------------~~-----~~~~~~~~~~l~~~l~~-~~~LlilDd~ 106 (737)
.. ..+.+.....+.+.++. +.-.+|+|.+
T Consensus 78 ~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 78 EDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp HHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred hhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 00 12344445555554433 4478999986
No 306
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00097 Score=62.68 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCCCCcEEeccCccccccccccccCccccceeccccc--cccccCccccCCCCCccEEEccCCCCCc-ccCcccCCCCcc
Q 004686 444 GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC--RNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQDLGEVECL 520 (737)
Q Consensus 444 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L 520 (737)
.+..|+.|++.++..++. ..+-.+++|+.|.++.| ...+.++.-...+++|++|++++|.+.- .....+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344555555555443322 23445666677777666 3334444434455677777777766532 111224455666
Q ss_pred cEEEccCccCcccCc----ccccCCCCcEEEccCCC
Q 004686 521 EELDVGGTAIRQIPP----SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 521 ~~L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~ 552 (737)
..|++.+|..+.+-. .+.-+++|++|+-....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 677777766664432 23346677777655443
No 307
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.62 E-value=0.0098 Score=57.17 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHhhhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc---cCceEEEeecchhhcccChHHHHHHHHHHHhhcccccc
Q 004686 5 NGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ---FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (737)
Q Consensus 5 ~~~l~~-~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 80 (737)
...+.+ ....+-+++++|++|+||.-+++.+++..... -+.|-++..+..+.....+.....++..+
T Consensus 99 k~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~--------- 169 (344)
T KOG2170|consen 99 KSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNR--------- 169 (344)
T ss_pred HHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHH---------
Confidence 334444 34468899999999999999999999854221 11121111111122222333334444443
Q ss_pred cchhhhHHHHHHHhc-CCeEEEEEcCCCChHH--HHHHhcCC
Q 004686 81 WDVHKGINLIRWRLC-RKRVLVILDDVDQLEQ--LQALVGNH 119 (737)
Q Consensus 81 ~~~~~~~~~l~~~l~-~~~~LlilDd~~~~~~--~~~l~~~l 119 (737)
+++..+ -+|-++|+|+++.+.. ++.+.+.+
T Consensus 170 ---------v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 170 ---------VRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred ---------HHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 233332 4788999999987743 55554444
No 308
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.62 E-value=0.028 Score=65.41 Aligned_cols=35 Identities=34% Similarity=0.305 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.++.++|++|+|||++|+.++..+...-...+.+.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 57889999999999999999997644333444444
No 309
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.0083 Score=69.23 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccC
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~ 44 (737)
..++.++||+|+|||.+|+.++..+-+...
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~ 625 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQ 625 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCc
Confidence 357999999999999999999987644333
No 310
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.59 E-value=0.01 Score=59.15 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc-c-CceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-EASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f-~~~~~~~ 50 (737)
..+++.++|++|+||||++.+++...... . ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999999999999999999866433 2 3444544
No 311
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.59 E-value=0.0013 Score=57.82 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=26.4
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+++.+.+..-......|.|+|+.|+||+++|+.+...-.
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 344444443223335789999999999999998888543
No 312
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.58 E-value=0.0084 Score=60.62 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=35.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh--ccc----CceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--DQF----EASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~--~~f----~~~~~~~ 50 (737)
+.|.++|.++-+.-.++.|+|++|+|||+++..++..+. ... ..++|++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 456666766666678999999999999999999886322 111 2467876
No 313
>PRK08233 hypothetical protein; Provisional
Probab=96.57 E-value=0.0077 Score=56.06 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36999999999999999999998764
No 314
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.57 E-value=0.0049 Score=60.58 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.|.|+|.+|+||||+|+++...+.+.-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 57999999999999999999997765433344443
No 315
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.56 E-value=0.00023 Score=78.18 Aligned_cols=108 Identities=25% Similarity=0.254 Sum_probs=55.3
Q ss_pred CCCCcEEeccCCCC-CCCCccccccCCCCCCeEeCCCCCCc---ccchhhhcCCCCCEEccccCc---cCCCC-----CC
Q 004686 587 LSSLQTLDLSDCNL-LEGAIPSDIGSLFSLEAIDLSGNNFF---SLPSSINQLLKLKILCLEKCR---NLKSL-----PE 654 (737)
Q Consensus 587 ~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~---~~~~~-----~~ 654 (737)
|++|++|.+..|.. .+..+-.....+++|++|++++|... .+......+++|+.|.+..+. .++.. ..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 45555555555542 22223333344555666666655332 122223445555554443332 12211 11
Q ss_pred CC-CccceeecccccccccccccccccCCCCc-eEEEecCCCc
Q 004686 655 LP-PEIVFVGAEDCTSLETISAFAKLSRSPNI-ALNFLNCFKL 695 (737)
Q Consensus 655 l~-~~L~~l~l~~c~~L~~l~~~~~~~~~~~~-~~~~~~~~~L 695 (737)
.. ..+..+.+.+|++++.+.+.... .+... ...+.+||+|
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 22 26677788888888888877664 33332 4667788877
No 316
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.014 Score=54.25 Aligned_cols=30 Identities=37% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+-++=|.++||+|+|||.||+++++.....
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 345789999999999999999999965443
No 317
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.56 E-value=0.019 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|+|.|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999865
No 318
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.55 E-value=0.0046 Score=58.01 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh-
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL- 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l- 94 (737)
++++|.|++|+|||++++.+...+...-..+++.. . +. .....+....+... .. +..+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----p-T~---~Aa~~L~~~~~~~a----~T----i~~~l~~~~ 81 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----P-TN---KAAKELREKTGIEA----QT----IHSFLYRIP 81 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----S-SH---HHHHHHHHHHTS-E----EE----HHHHTTEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----C-cH---HHHHHHHHhhCcch----hh----HHHHHhcCC
Confidence 58999999999999999999887665433344432 1 11 11222333322110 00 00000000
Q ss_pred ---------cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 95 ---------CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 95 ---------~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
..+.-++|+|++.... .+..+..... ..+.++|+.--..
T Consensus 82 ~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 82 NGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp CEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred cccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 1234599999986553 4666666554 3577887776654
No 319
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.55 E-value=0.013 Score=55.09 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+|+|.|++|+||||+|++++..+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.017 Score=60.21 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
..+|.++|+.|+||||++.+++..++..-..+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 58999999999999999999998665443334444
No 321
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.051 Score=55.70 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=78.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
.+--|=-+++||+|.|||+++.++|+.+ .|+ ||......+. +-.+ ++.++...
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L--~yd--IydLeLt~v~---~n~d-Lr~LL~~t------------------- 284 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYL--NYD--IYDLELTEVK---LDSD-LRHLLLAT------------------- 284 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhc--CCc--eEEeeecccc---CcHH-HHHHHHhC-------------------
Confidence 3445778899999999999999999865 233 4433221121 1112 44444331
Q ss_pred HHhcCCeEEEEEcCCCChHH--------------------HHHHhcCCC--CCCC-CcE-EEEEeCCchhh-----hhcC
Q 004686 92 WRLCRKRVLVILDDVDQLEQ--------------------LQALVGNHD--WFGF-GSR-IIITSRDEHVL-----KSHG 142 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~~~--------------------~~~l~~~l~--~~~~-~~~-iliTtR~~~~~-----~~~~ 142 (737)
..+=+||+.|+|-.-+ +.-++-.+- ...+ +-| |+.||-..+.. ..-+
T Consensus 285 ----~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGR 360 (457)
T KOG0743|consen 285 ----PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGR 360 (457)
T ss_pred ----CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCc
Confidence 2334455555432200 111111111 1122 234 55666653322 2224
Q ss_pred cccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 143 VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 143 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
.+.++.|.-=+.++...|+.+...... ......+|-+...|.-..=..++.
T Consensus 361 mDmhI~mgyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 361 MDMHIYMGYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred ceeEEEcCCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHH
Confidence 455788998899999999998874322 123444555544454333333443
No 322
>PRK13695 putative NTPase; Provisional
Probab=96.52 E-value=0.0049 Score=56.77 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEE
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 49 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~ 49 (737)
.|+|+|++|+||||+++.++...+. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999886653 34433343
No 323
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.51 E-value=0.0017 Score=54.12 Aligned_cols=26 Identities=50% Similarity=0.583 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
|.|+|++|+|||++|+.++.++.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999998765443
No 324
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.50 E-value=0.017 Score=69.35 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
-++=|.++||+|+|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999864
No 325
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.50 E-value=0.014 Score=58.37 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
..-.++.|.|++|+|||+++.+++...... -..++|+. ...+..++.+.+...
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~ 81 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQ 81 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHH
Confidence 344699999999999999999998865433 45567755 233455566555444
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.017 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|.|||||++.++-..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999998743
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.49 E-value=0.0017 Score=54.51 Aligned_cols=28 Identities=43% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCc
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~ 45 (737)
|.++|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6899999999999999999988777754
No 328
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.48 E-value=0.0081 Score=67.13 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=59.8
Q ss_pred hhhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc--
Q 004686 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-- 78 (737)
Q Consensus 2 ~~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-- 78 (737)
..|..+|. ++-+.-+++.|+|++|+|||+|+..++......-..++|+. .. ..+. ...++.++.+.+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E--~t~~---~~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AE--HALD---PDYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----Cc--cchh---HHHHHHcCCChhHeE
Confidence 34566666 56667799999999999999999888775544446678876 22 2222 1244454443221
Q ss_pred --cccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 79 --IIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 79 --~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
.+...+.....+.+.++ ++.-+||+|.+.
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 12233444555555554 356689999874
No 329
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.01 Score=54.25 Aligned_cols=23 Identities=52% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|.|.|++|+||||+|+++++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999974
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.47 E-value=0.021 Score=60.01 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+.++.++|++|+||||++.+++..++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999998754
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.47 E-value=0.015 Score=56.25 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=30.0
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
+..+.. ..+...+|+|.|++|+||||+++.++..++...
T Consensus 23 ~~~~~~-~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 23 LAALQA-EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred HHHHHh-cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 344443 345678999999999999999999998776543
No 332
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.035 Score=57.40 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 333
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.015 Score=64.59 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
..+..+.||.|||||.||+.++..+-+.=+..+-++ ++.+ .-+.-...+.+.. +.+..-++ --.+-+..
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----MSEy-----~EkHsVSrLIGaP-PGYVGyee-GG~LTEaV 589 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----MSEY-----MEKHSVSRLIGAP-PGYVGYEE-GGQLTEAV 589 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----hHHH-----HHHHHHHHHhCCC-CCCceecc-ccchhHhh
Confidence 468889999999999999999997633223334443 2221 1233344433332 22222222 23344555
Q ss_pred cCCeE-EEEEcCCCCh--HHHHHHhcCCCCC
Q 004686 95 CRKRV-LVILDDVDQL--EQLQALVGNHDWF 122 (737)
Q Consensus 95 ~~~~~-LlilDd~~~~--~~~~~l~~~l~~~ 122 (737)
+.++| +|.||+++.. +.++-|+..+-++
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 67776 9999999654 5577777666433
No 334
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.13 Score=51.41 Aligned_cols=131 Identities=10% Similarity=0.083 Sum_probs=77.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc--------cc-C-ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD--------QF-E-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~--------~f-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 83 (737)
-..+..++|+.|.||+++|+.++..+-. .. + .+.++.. ....-.+.++ +++...+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~I-r~l~~~~~~~~------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSEF-LSAINKLYFSS------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHHH-HHHHHHhccCC-------
Confidence 3578889999999999999999997621 11 1 2222210 0111112221 12222211100
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-chhhhh-cCcccEEEcCCCChhhHHH
Q 004686 84 HKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQ 159 (737)
Q Consensus 84 ~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~l~~~~~~~ 159 (737)
.-.+++-++|+|+++... ...+++..+-+.++.+.+|++|.. ..+... .+....+++.++++++..+
T Consensus 86 ---------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 86 ---------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred ---------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 001477789999987664 366666666655677777766654 333322 2335579999999999998
Q ss_pred HHhhh
Q 004686 160 LFHLK 164 (737)
Q Consensus 160 l~~~~ 164 (737)
.+.+.
T Consensus 157 ~l~~~ 161 (299)
T PRK07132 157 KLLSK 161 (299)
T ss_pred HHHHc
Confidence 88754
No 335
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.012 Score=58.14 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=64.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHH-HH--hcccCceEEEeecchhhc---------ccChHHHHHHHHHHHhhccccc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYN-TL--KDQFEASSFLANVREVSV---------TRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~-~~--~~~f~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
+++...|.+.|.+|.|||.||.++.- ++ +..|..++.....-++.. .+...-.++.|...+..-...+
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 45678999999999999999988865 32 445655544322111111 1112222333333322111111
Q ss_pred ccchhhhHHHH----------HHHhcCC---eEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 80 IWDVHKGINLI----------RWRLCRK---RVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 80 ~~~~~~~~~~l----------~~~l~~~---~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
... ...++.+ ..+++++ .-++|+|++++.. ++..+... .++|+||+.|.-..
T Consensus 322 ~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~a 388 (436)
T COG1875 322 EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPA 388 (436)
T ss_pred ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHH
Confidence 111 1112211 1122333 3599999998774 35555554 37999999987754
No 336
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.012 Score=57.55 Aligned_cols=98 Identities=20% Similarity=0.119 Sum_probs=58.3
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHH-Hhhcccccccc
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE-VLMERDLIIWD 82 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~ 82 (737)
|.+.|-.+-+.-+++=|+|+.|.|||++|.+++-..+..-..++|++ .....++ +.+.+++.. +..-....+.+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~l~p-~r~~~l~~~~~d~l~v~~~~~ 123 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHALDP-ERAKQLGVDLLDNLLVSQPDT 123 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCCCCH-HHHHHHHHhhhcceeEecCCC
Confidence 34445556667799999999999999999999887766666888987 2222222 233444444 22111122223
Q ss_pred hhhhHH---HHHHHhcCCeEEEEEcCC
Q 004686 83 VHKGIN---LIRWRLCRKRVLVILDDV 106 (737)
Q Consensus 83 ~~~~~~---~l~~~l~~~~~LlilDd~ 106 (737)
.++... .+......+--|+|+|.+
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 333333 333333334569999987
No 337
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.41 E-value=0.014 Score=58.39 Aligned_cols=90 Identities=21% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc----cccchhhh
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL----IIWDVHKG 86 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 86 (737)
+-|.-+++-|+|+.|+||||||..++.+.+..-..++|++. .... -...+..++.+.+. .|...++.
T Consensus 49 G~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~----e~~l-----d~~~a~~lGvdl~rllv~~P~~~E~a 119 (322)
T PF00154_consen 49 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA----EHAL-----DPEYAESLGVDLDRLLVVQPDTGEQA 119 (322)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES----SS--------HHHHHHTT--GGGEEEEE-SSHHHH
T ss_pred ccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC----cccc-----hhhHHHhcCccccceEEecCCcHHHH
Confidence 34445799999999999999999999877655566788872 2222 12334444443332 23344555
Q ss_pred HHHHHHHhcCC-eEEEEEcCCCCh
Q 004686 87 INLIRWRLCRK-RVLVILDDVDQL 109 (737)
Q Consensus 87 ~~~l~~~l~~~-~~LlilDd~~~~ 109 (737)
...+.+.++.. --++|+|.|...
T Consensus 120 l~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 120 LWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHHHHhhcccccEEEEecCccc
Confidence 55555655543 348899988544
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.013 Score=59.94 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhccc--CceEEEeecchhhcc-cChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
-.++.++|+.|+||||++.+++.+....+ ..+.++. .... ....+-++.+.+.++.+... ..+..+.. ...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit----~D~~R~ga~EqL~~~a~~~gv~~~~-~~~~~~l~-~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT----TDSYRIGGHEQLRIFGKILGVPVHA-VKDGGDLQ-LAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe----cccccccHHHHHHHHHHHcCCceEe-cCCcccHH-HHH
Confidence 46999999999999999999998654332 3444443 1111 12334444445554432211 11112222 223
Q ss_pred HHhcCCeEEEEEcCCC
Q 004686 92 WRLCRKRVLVILDDVD 107 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~ 107 (737)
..+.++ -++++|.+-
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 344444 556699873
No 339
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0085 Score=52.85 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=26.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccC
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~ 44 (737)
...+|+++|.+|.||||+|.++...+.+..-
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999998765533
No 340
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.037 Score=61.07 Aligned_cols=153 Identities=19% Similarity=0.238 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
++=|.++||+|+|||-||+++|-.. .+-|+. ++..+ +.+.+... + ...+..+....
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~s----vSGSE----FvE~~~g~-~----------asrvr~lf~~a 399 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS----VSGSE----FVEMFVGV-G----------ASRVRDLFPLA 399 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhccc-----CCceee----echHH----HHHHhccc-c----------hHHHHHHHHHh
Confidence 5779999999999999999999853 344554 33222 22211111 0 12233333333
Q ss_pred -cCCeEEEEEcCCCChH-----------------HHHHHhcCCCCCC--CCcEEEEEeCCchhh-----hhcCcccEEEc
Q 004686 95 -CRKRVLVILDDVDQLE-----------------QLQALVGNHDWFG--FGSRIIITSRDEHVL-----KSHGVTNTYKV 149 (737)
Q Consensus 95 -~~~~~LlilDd~~~~~-----------------~~~~l~~~l~~~~--~~~~iliTtR~~~~~-----~~~~~~~~~~l 149 (737)
+..+.+|.+|+++... .+.+++...-... .+..++-+|....+. ..-+.+.++.+
T Consensus 400 r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i 479 (774)
T KOG0731|consen 400 RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQI 479 (774)
T ss_pred hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceec
Confidence 3467888888764321 1555555544332 223333344333222 22245567888
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 193 (737)
+.-+.....++|.-++..-... ....+..+ |+.++.|++-|.
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 8888889999998776332222 23334445 888999988553
No 341
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.40 E-value=0.013 Score=49.14 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.9
Q ss_pred hhHHhhhcC-CCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 3 KMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 3 ~l~~~l~~~-~~~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.|...+.+. +..+-|++++|++|+|||-+++.+++.
T Consensus 40 ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 40 AIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345555543 446789999999999999999999996
No 342
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.38 E-value=0.02 Score=58.21 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=43.0
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh--c---cc-CceEEEeecchhhcccChHHHHHHHHHHHh
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D---QF-EASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~--~---~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 73 (737)
+.|.++|.++-+.-.++-|+|++|+|||+++..++.... . .- ..++|++ .....+..+ +.++++.++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId----tE~~f~~eR-l~qia~~~~ 182 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----TEGTFRPQR-LIQIAERFG 182 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE----CCCCccHHH-HHHHHHHcC
Confidence 356666666666678999999999999999998886332 1 11 2578876 333333333 345555543
No 343
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0081 Score=55.78 Aligned_cols=30 Identities=47% Similarity=0.596 Sum_probs=27.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
....+|+|.|.+|+||||+|++++..++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999998766
No 344
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.36 E-value=0.0046 Score=56.08 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=24.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
++.+.+........-|.|+|+.|+||+.+|+.+.+.
T Consensus 10 ~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 10 RLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp HHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 444444432222256789999999999999999883
No 345
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.35 E-value=0.015 Score=57.08 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=63.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----ccccchhhhHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKGINL 89 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 89 (737)
+.+.++|.|+.|+||||+++.++..+... ...+++.. ..+.......++...+ ..+.+... +....... ...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHHh-cccccccccccccccccchH-HHH
Confidence 45789999999999999999999865432 22333321 1111111112222111 01011000 00011111 112
Q ss_pred HHHHh-cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchh
Q 004686 90 IRWRL-CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (737)
Q Consensus 90 l~~~l-~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 137 (737)
+...+ ...+=++|+|++...+.+.++...+ ..|..+|+||.+..+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 22222 2578899999998877777666554 257889999997544
No 346
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.35 E-value=0.0079 Score=61.80 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+=+.|+|+.|.|||.|+-.+++.+...-..++++. .-..++.+.+-+. . ...+.+..+-+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~~-~--------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQL-R--------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHHH-h--------CCCccHHHHHHH
Confidence 4688999999999999999999997654333334332 1122233333222 1 112224455566
Q ss_pred hcCCeEEEEEcCCC--ChHH---HHHHhcCCCCCCCCcEEEEEeCC
Q 004686 94 LCRKRVLVILDDVD--QLEQ---LQALVGNHDWFGFGSRIIITSRD 134 (737)
Q Consensus 94 l~~~~~LlilDd~~--~~~~---~~~l~~~l~~~~~~~~iliTtR~ 134 (737)
+.++..||.+|++. +..+ +..+...+. ..|..++.||-.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCC
Confidence 66777899999863 3322 444544443 456656555553
No 347
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.0054 Score=61.45 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=36.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 67 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 67 (737)
.+++++.|.|||||||+|.+.+-...+....+..+. ..+.+++.++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence 479999999999999999998887766655566655 5555666555543
No 348
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.35 E-value=0.012 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
++++|+|+.|.||||+++.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999863
No 349
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.32 E-value=0.025 Score=57.54 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh--cccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~--~~f~~~~~~~ 50 (737)
-++|.++||.||||||...++|.+.. ..-..+..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999987777776543 3334455554
No 350
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.043 Score=55.78 Aligned_cols=88 Identities=19% Similarity=0.158 Sum_probs=48.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccC-hHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG-LVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
..+++.++|+.|+||||++..++......-..+.++. ..+... ..+-++..+..++.+... ..+..+..+.+ +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt----aDtyR~gAveQLk~yae~lgvpv~~-~~dp~dL~~al-~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT----TDTFRSGAVEQFQGYADKLDVELIV-ATSPAELEEAV-Q 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe----CCccCccHHHHHHHHhhcCCCCEEe-cCCHHHHHHHH-H
Confidence 4589999999999999999999986644333455554 222222 222334444443332211 12223332222 3
Q ss_pred Hhc--CCeEEEEEcCCC
Q 004686 93 RLC--RKRVLVILDDVD 107 (737)
Q Consensus 93 ~l~--~~~~LlilDd~~ 107 (737)
.++ +..=+|++|-+-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 332 344688889773
No 351
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00012 Score=68.74 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=53.3
Q ss_pred cceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCC--CCCCCCCCcEEeccCcc
Q 004686 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCT 457 (737)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 457 (737)
.+.|++=++.++++.-...++.|++|.|+-|.|+.+. .+..|.+|+.|.|+.|.+..... .+.++|+|+.|.|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3344444445555555556666677777777666653 25666777777777665543322 25566666666666655
Q ss_pred ccccccc-----cccCccccceec
Q 004686 458 RLLEVHQ-----SVGTLKRLILLN 476 (737)
Q Consensus 458 ~~~~~~~-----~~~~l~~L~~L~ 476 (737)
..+..+. .+.-+|+|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 5443321 233455555554
No 352
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.29 E-value=0.0074 Score=57.33 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=30.5
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
.+.+....+...+|+|+|++|+|||||+-++...+++.-..+..+
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl 63 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL 63 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 333444445678999999999999999999999776553334333
No 353
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.27 E-value=0.0037 Score=54.24 Aligned_cols=22 Identities=59% Similarity=0.830 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004686 18 IGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~ 39 (737)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999974
No 354
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.26 E-value=0.03 Score=54.82 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=42.2
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
|.+++. +-+.-.++.|.|++|+|||+++.+++...... -..++|+. ...+..++.+.+...
T Consensus 3 LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 3 LDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred hhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 344444 44555799999999999999999998865433 44566654 345666777766543
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.24 E-value=0.016 Score=59.74 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
..|.|.|+.|.||||+++.++..+.......++.. ++..++...-...... ......+..+..+.+...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--------Edp~E~~~~~~~~~i~-q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--------EDPIEYVHRNKRSLIN-QREVGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--------cCChhhhccCccceEE-ccccCCCCcCHHHHHHHhhc
Confidence 58999999999999999999887765544544442 1111111000000000 00001112234556677788
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
..+=+|++|++.+.+.+...... ...|..++.|....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 88899999999887765543332 13466666666543
No 356
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.0021 Score=60.52 Aligned_cols=84 Identities=29% Similarity=0.227 Sum_probs=39.1
Q ss_pred ccCCCCCcEEecCCC--cCCCCCCC-CCCCCCCcEEeccCcccccc-ccccccCccccceecccccccccc---CccccC
Q 004686 419 IKPLKELKFMNLSHS--CNLIRTPD-FTGVPNLERLNLEGCTRLLE-VHQSVGTLKRLILLNLKDCRNLVS---FPKNVC 491 (737)
Q Consensus 419 ~~~l~~L~~L~l~~~--~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~ 491 (737)
+..+++|+.|.++.| +....... ...+|+|++|++++|.+... --..+..+++|..|++.+|..+.. --..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 344556666666655 32222222 33446666666666543210 002234455555666665543321 112344
Q ss_pred CCCCccEEEcc
Q 004686 492 LMKSLKILCLC 502 (737)
Q Consensus 492 ~l~~L~~L~l~ 502 (737)
-+++|++|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 45666666543
No 357
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.21 E-value=0.0053 Score=61.77 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQ 65 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 65 (737)
|++++.|.||+||||+|...+....+.-..+..+. ....+++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS----~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS----TDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE----SSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee----cCCCccHHHHh
Confidence 68999999999999999999887665544556654 44444444444
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=96.21 E-value=0.0098 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++.|.|++|.|||+++...+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788899999999966555554
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.018 Score=50.99 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|.|||||++.++-..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999998743
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.20 E-value=0.0081 Score=56.17 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 68 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 68 (737)
++.|.|++|+|||+++.+++......-..++|+. ...+..++.+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s------~e~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT------LEESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCHHHHHHHH
Confidence 3789999999999999999886544445677765 234555555443
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.20 E-value=0.024 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999998863
No 362
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.20 E-value=0.0045 Score=46.62 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|+|.|++|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 363
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.17 E-value=0.0069 Score=57.61 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999985
No 364
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.16 E-value=0.021 Score=66.21 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.++.++||.|+|||++|+.+++.+-..-...+.+.. ..+...+.+.. +.... +.+...++ ...+.+.++
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~-s~~~~~~~~~~--------l~g~~-~gyvg~~~-~~~l~~~~~ 608 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDM-SEYMEKHTVSK--------LIGSP-PGYVGYNE-GGQLTEAVR 608 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEc-hhccccccHHH--------hcCCC-CcccCcCc-cchHHHHHH
Confidence 467899999999999999999976332233344431 11111111111 11111 11111111 123344444
Q ss_pred CCe-EEEEEcCCCChH--HHHHHhcCCC
Q 004686 96 RKR-VLVILDDVDQLE--QLQALVGNHD 120 (737)
Q Consensus 96 ~~~-~LlilDd~~~~~--~~~~l~~~l~ 120 (737)
.++ -+|++|+++... .++.++..+-
T Consensus 609 ~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 609 KKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred hCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 444 599999997653 3566555543
No 365
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.16 E-value=0.072 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+..|+|++|+|||+++..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998654
No 366
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.014 Score=54.66 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
-+-++=|.++||+|.|||-.|++++++.... |+. +-. .++.+....+ ....+.++.
T Consensus 208 idppkgvllygppgtgktl~aravanrtdac-----fir----vig----selvqkyvge-----------garmvrelf 263 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTDAC-----FIR----VIG----SELVQKYVGE-----------GARMVRELF 263 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccCce-----EEe----ehh----HHHHHHHhhh-----------hHHHHHHHH
Confidence 3445679999999999999999999975333 332 111 1222222222 123355566
Q ss_pred HHhcC-CeEEEEEcCCC
Q 004686 92 WRLCR-KRVLVILDDVD 107 (737)
Q Consensus 92 ~~l~~-~~~LlilDd~~ 107 (737)
+-.+. |-++|.+|.++
T Consensus 264 ~martkkaciiffdeid 280 (435)
T KOG0729|consen 264 EMARTKKACIIFFDEID 280 (435)
T ss_pred HHhcccceEEEEeeccc
Confidence 66655 45888889763
No 367
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.15 E-value=0.0057 Score=61.75 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
+...++++++||+|+||||+|+.++..+..
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445689999999999999999999996643
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.15 E-value=0.022 Score=64.93 Aligned_cols=179 Identities=20% Similarity=0.125 Sum_probs=85.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH-HhcccCceEEEeec--------chhhcccChHHHHHHHHHHHhhcccccccchhh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLANV--------REVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~-~~~~f~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 85 (737)
.++++|+||.|.||||+.+.++-. +..+ .+.+++.. ......-+..+-+.+-+..+ ..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStf-----------S~ 388 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTF-----------SG 388 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhheeeecChHhHHhhhhhHH-----------HH
Confidence 479999999999999999999864 2111 11122210 00000000011111111110 01
Q ss_pred hHHHHHHHhc--CCeEEEEEcCCCCh---HH---H-HHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccE---EEcCCCC
Q 004686 86 GINLIRWRLC--RKRVLVILDDVDQL---EQ---L-QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNT---YKVRGLD 153 (737)
Q Consensus 86 ~~~~l~~~l~--~~~~LlilDd~~~~---~~---~-~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~---~~l~~l~ 153 (737)
....+...+. .++-|+++|+.... .+ + .++...+. ..|+.+++||....+......... ..+ .++
T Consensus 389 ~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d 465 (771)
T TIGR01069 389 HMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFD 465 (771)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEc
Confidence 1112222222 47899999997432 22 2 23333332 357889999998765432211111 111 122
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQ 216 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~ 216 (737)
.+ .....++.. .+.. ....+-.|++++ |+|-.+..-|..+......+...+++.+.
T Consensus 466 ~~-~l~p~Ykl~-~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 466 EE-TLSPTYKLL-KGIP----GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CC-CCceEEEEC-CCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 111111111 1111 124566677766 89988888888776544445555555543
No 369
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.12 E-value=0.015 Score=62.70 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=50.9
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
..|.-++..++|++|.||||||.-+|.+. +|. ++-+. .+...+...+-..|...+....
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN----ASDeRt~~~v~~kI~~avq~~s-------------- 380 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN----ASDERTAPMVKEKIENAVQNHS-------------- 380 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec----ccccccHHHHHHHHHHHHhhcc--------------
Confidence 35567999999999999999999999853 333 33333 5555666655555555532221
Q ss_pred HHHh--cCCeEEEEEcCCCCh
Q 004686 91 RWRL--CRKRVLVILDDVDQL 109 (737)
Q Consensus 91 ~~~l--~~~~~LlilDd~~~~ 109 (737)
.+ .+++.-+|+|+++-.
T Consensus 381 --~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 --VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --ccccCCCcceEEEecccCC
Confidence 12 267788899988654
No 370
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.12 E-value=0.02 Score=49.63 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=35.6
Q ss_pred ccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCcc
Q 004686 419 IKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (737)
Q Consensus 419 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 497 (737)
|.++.+|+.+.+... ...... .|..+++|+.+.+.++ ........+..++.|+.+.+.. .....-...+..+++|+
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 444555555555432 221111 2444555555555442 2222223445555555555543 11111122344455555
Q ss_pred EEEccCCCCCcccCcccCCCCcccEEEccC
Q 004686 498 ILCLCGCLKLEKLPQDLGEVECLEELDVGG 527 (737)
Q Consensus 498 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 527 (737)
.+.+..+ ....-...+.++ +|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555432 222222334444 555555543
No 371
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.053 Score=52.00 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
--+-|+++||+|.|||-||++++....
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 358899999999999999999998653
No 372
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.09 E-value=0.021 Score=62.71 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=60.9
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 77 (737)
..|.+++.++-+.-.++.|.|++|+|||+++.+++......-..++|+. + ..+..++.+.. +.++.+..
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis----~--e~~~~~i~~~~-~~~g~~~~~~~~ 332 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA----F--EESRAQLIRNA-RSWGIDLEKMEE 332 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE----e--cCCHHHHHHHH-HHcCCChHHHhh
Confidence 4566677666666789999999999999999999986555556788875 2 33455554443 23221110
Q ss_pred ----------ccccchhhhHHHHHHHhcC-CeEEEEEcCCC
Q 004686 78 ----------LIIWDVHKGINLIRWRLCR-KRVLVILDDVD 107 (737)
Q Consensus 78 ----------~~~~~~~~~~~~l~~~l~~-~~~LlilDd~~ 107 (737)
+.....+.....+.+.++. +.-++|+|.+.
T Consensus 333 ~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 333 KGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred cCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0111223444445544433 44589999973
No 373
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.047 Score=50.45 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|+|||||++.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999998743
No 374
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.07 E-value=0.028 Score=59.14 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.-|.+.|++|+|||++|+.++....
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhc
Confidence 3689999999999999999999654
No 375
>PRK15453 phosphoribulokinase; Provisional
Probab=96.06 E-value=0.036 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
....+|+|.|.+|+||||+++.+++.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999987654
No 376
>COG4240 Predicted kinase [General function prediction only]
Probab=96.05 E-value=0.015 Score=53.37 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc-CceEEEeecchhhcc-cChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
.+++-+++|.|+-|.||||++..++..+..++ ..++... ...+..+ .+...++++.-.-+-.......+|++-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 34578999999999999999999999665555 4555544 1222222 2222333443222222223344677777777
Q ss_pred HHHHhcCCeE
Q 004686 90 IRWRLCRKRV 99 (737)
Q Consensus 90 l~~~l~~~~~ 99 (737)
+..+.+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 7777777643
No 377
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.04 E-value=0.014 Score=57.30 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
.|+++|.+|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 378
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.03 E-value=0.017 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999865
No 379
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.02 E-value=0.0081 Score=54.47 Aligned_cols=24 Identities=50% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
|+|+|++|+||||++++++..+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999997753
No 380
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.02 E-value=0.052 Score=55.01 Aligned_cols=24 Identities=42% Similarity=0.726 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++++.|.+|+||||+++.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999998765
No 381
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.01 E-value=0.028 Score=53.68 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
+|+|.|++|+||||+|+.++..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 382
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.98 E-value=0.017 Score=53.66 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~ 37 (737)
++.|+|+.|.||||+.+.++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999985
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.024 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|.|||||++.++-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 384
>PTZ00301 uridine kinase; Provisional
Probab=95.96 E-value=0.007 Score=57.09 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
..+|+|.|++|+||||+|+.++.++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999998775443
No 385
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.94 E-value=0.034 Score=63.59 Aligned_cols=176 Identities=19% Similarity=0.147 Sum_probs=85.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH-HhcccCceEEEeec------------chhhcccChHHHHHHHHHHHhhcccccc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLANV------------REVSVTRGLVPLQEQLLSEVLMERDLII 80 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~-~~~~f~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 80 (737)
+.+++.|+||.+.||||+.+.+... +-. ..+.+|+.. .......++.+-+..+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma--q~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA--KSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH--HhCCCcccCCCccccccceEEEecCCccchhhchhHHHH----------
Confidence 4578999999999999999999762 111 111222210 001111111111111111
Q ss_pred cchhhhHHHHHHHhc--CCeEEEEEcCCCCh---HH---H-HHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccEE---E
Q 004686 81 WDVHKGINLIRWRLC--RKRVLVILDDVDQL---EQ---L-QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTY---K 148 (737)
Q Consensus 81 ~~~~~~~~~l~~~l~--~~~~LlilDd~~~~---~~---~-~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~---~ 148 (737)
....+...+. ..+-|+++|+.... .+ + .++...+. ..|+.+|+||....+.........+ .
T Consensus 394 -----~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 394 -----HMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred -----HHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 1122222222 47789999997432 22 2 22333332 3478999999987665433211111 1
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQ 216 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~ 216 (737)
+ .++. +.....++... +.. ....+-.|++++ |+|-.+..-|..+-.....+...+++.+.
T Consensus 467 ~-~~d~-~~l~~~Ykl~~-G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 467 V-EFDE-ETLRPTYRLLI-GIP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred E-EEec-CcCcEEEEEee-CCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 1111 11111111111 111 124566677776 88888888888765544445555555543
No 386
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.017 Score=57.43 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
+-|+++||+|.|||.||+++|.+-...|
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTF 273 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTF 273 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeE
Confidence 6789999999999999999999765443
No 387
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.93 E-value=0.011 Score=55.68 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.++.|.|++|+|||+++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999986543
No 388
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.04 Score=55.23 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=65.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.|-|.++||+|.|||..|++++..- ..|..+.- .-++..+=.+-. ..+-.+..+.
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~S--GlDYA~mT--------GGDVAPlG~qaV---------------TkiH~lFDWa 438 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHS--GLDYAIMT--------GGDVAPLGAQAV---------------TKIHKLFDWA 438 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhc--CCceehhc--------CCCccccchHHH---------------HHHHHHHHHH
Confidence 5899999999999999999999842 23322221 111111111111 1122233333
Q ss_pred c--CCeEEEEEcCCCCh--------------HHHHHHhcCCCCCCCCcE-EEEEeCCchhhh--hcCcccEEEcCCCChh
Q 004686 95 C--RKRVLVILDDVDQL--------------EQLQALVGNHDWFGFGSR-IIITSRDEHVLK--SHGVTNTYKVRGLDYV 155 (737)
Q Consensus 95 ~--~~~~LlilDd~~~~--------------~~~~~l~~~l~~~~~~~~-iliTtR~~~~~~--~~~~~~~~~l~~l~~~ 155 (737)
+ .+-.|+.+|.++.- ..+.+++..-.+.+..-. ++-|.|+..... ..+.+.+++.+--.+|
T Consensus 439 kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeE 518 (630)
T KOG0742|consen 439 KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEE 518 (630)
T ss_pred hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChH
Confidence 2 45688889987321 236677665544433333 344445433222 2244556666555566
Q ss_pred hHHHHHhhh
Q 004686 156 EALQLFHLK 164 (737)
Q Consensus 156 ~~~~l~~~~ 164 (737)
|...|+...
T Consensus 519 ERfkll~lY 527 (630)
T KOG0742|consen 519 ERFKLLNLY 527 (630)
T ss_pred HHHHHHHHH
Confidence 666666543
No 389
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.90 E-value=0.046 Score=50.65 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChH------HHHHHHHHHHhhcc--cccc---cchh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV------PLQEQLLSEVLMER--DLII---WDVH 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~i~~~l~~~~--~~~~---~~~~ 84 (737)
.+++|.|+.|.|||||++.++-... .....+++... .... .+.. .++-++++.++... ...+ ..-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 5899999999999999999987432 23344444311 1110 0111 11222333332211 0111 1112
Q ss_pred hhHHHHHHHhcCCeEEEEEcCCCCh---HHHHHHhcCCCCC-CC-CcEEEEEeCCchhh
Q 004686 85 KGINLIRWRLCRKRVLVILDDVDQL---EQLQALVGNHDWF-GF-GSRIIITSRDEHVL 138 (737)
Q Consensus 85 ~~~~~l~~~l~~~~~LlilDd~~~~---~~~~~l~~~l~~~-~~-~~~iliTtR~~~~~ 138 (737)
...-.+-..+...+-++++|+.... ...+.+...+... .. +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2222334445567789999986322 2222222222211 22 66788888876543
No 390
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.90 E-value=0.023 Score=53.65 Aligned_cols=88 Identities=23% Similarity=0.208 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhh-------cccccccchh----
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-------ERDLIIWDVH---- 84 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 84 (737)
..++|.|.+|+|||+|+.++++.... +.++++.+ -.+...+.++.+++...-.. ...+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~i---Ger~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYALI---GERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEEE---SECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeeec---cccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 48999999999999999999997642 33455542 12334555566655433111 1111111000
Q ss_pred ---hhHHHHHHHhcCCeEEEEEcCCCCh
Q 004686 85 ---KGINLIRWRLCRKRVLVILDDVDQL 109 (737)
Q Consensus 85 ---~~~~~l~~~l~~~~~LlilDd~~~~ 109 (737)
-...+.... ++++.|+++||+...
T Consensus 91 ~~a~t~AEyfrd-~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 91 YTALTIAEYFRD-QGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEEETHHHH
T ss_pred ccchhhhHHHhh-cCCceeehhhhhHHH
Confidence 011222223 689999999998433
No 391
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.89 E-value=0.028 Score=51.53 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|+|||||++.++--
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 59999999999999999998863
No 392
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.89 E-value=0.063 Score=50.42 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~ 37 (737)
+++|+|+.|+|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 393
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.87 E-value=0.035 Score=60.74 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..-|.|+|++|+|||++|+.+.+..
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999998743
No 394
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.87 E-value=0.017 Score=53.29 Aligned_cols=26 Identities=50% Similarity=0.703 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+|+|.|.+|+||||+|+.++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999976543
No 395
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.86 E-value=0.037 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|.|||||++.++-..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998743
No 396
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.86 E-value=0.042 Score=46.30 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
|.+.|.+|+|||+++..++..+.+.-..+..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999997765433444443
No 397
>PRK04040 adenylate kinase; Provisional
Probab=95.85 E-value=0.0094 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999874
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.85 E-value=0.0088 Score=51.31 Aligned_cols=36 Identities=31% Similarity=0.260 Sum_probs=26.6
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.+.+...-+.-.+|.+.|+-|+||||+++.++..+
T Consensus 11 l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 11 FGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 333443322333599999999999999999999965
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.84 E-value=0.019 Score=62.27 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=45.6
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH-HhcccCceEEEeecchhhcccChHHHHHHH
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLANVREVSVTRGLVPLQEQL 68 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 68 (737)
+-|.+++.++-+.-+++.|.|++|+|||++|.+++.+ .++.-+.++|+. + .++..++.+..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs----~--eE~~~~l~~~~ 69 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT----F--EESPQDIIKNA 69 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE----E--ecCHHHHHHHH
Confidence 4566777788888899999999999999999999875 444346778876 2 35555555554
No 400
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.84 E-value=0.009 Score=56.98 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+..+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 401
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0076 Score=52.27 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|.|.|++|+||||+|+.+++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999999965
No 402
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.81 E-value=0.024 Score=54.27 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=67.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecc--hhhcccChHHHHHHHHHHHhhcccc---cc---cchhhhH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR--EVSVTRGLVPLQEQLLSEVLMERDL---II---WDVHKGI 87 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~~---~~---~~~~~~~ 87 (737)
.+++|+|++|+||||+++.++.-.+-. .+.+++.... ... .....+.+.+++...+...+. -+ ..-+...
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 589999999999999999998743322 2334433110 011 112333445555554432211 11 1122223
Q ss_pred HHHHHHhcCCeEEEEEcCCCChHH------HHHHhcCCCCCCCCcEEEEEeCCchhhhhcC
Q 004686 88 NLIRWRLCRKRVLVILDDVDQLEQ------LQALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (737)
Q Consensus 88 ~~l~~~l~~~~~LlilDd~~~~~~------~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~ 142 (737)
-.+-+.+.-++-++|.|+....-+ .-.++..+. ...|...+..|.+-.++....
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 344556677889999998643321 122222211 135777888899876666543
No 403
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.79 E-value=0.082 Score=58.43 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...|.|+|+.|+|||++|+.+.+.-...-...+.+.
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~ 254 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVN 254 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEee
Confidence 347899999999999999999885432222344444
No 404
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.79 E-value=0.07 Score=49.64 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+|++.|++|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999987653
No 405
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.79 E-value=0.012 Score=68.38 Aligned_cols=139 Identities=18% Similarity=0.158 Sum_probs=77.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc----CceEEEeecchhhcccChHH-HHHHHHHHHhhcccccccchhhhHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF----EASSFLANVREVSVTRGLVP-LQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
.-+.|+|.+|.||||..+.++....++. +..+++.............+ -+...+........ .........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHH
Confidence 4789999999999999999998543332 22333331111111111111 11222222111111 111222222
Q ss_pred HHHhcCCeEEEEEcCCCChHH---------HHHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccEEEcCCCChhhHHHHH
Q 004686 91 RWRLCRKRVLVILDDVDQLEQ---------LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 91 ~~~l~~~~~LlilDd~~~~~~---------~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 161 (737)
.+.++..++++.+|+++.... +..+.+. -+.+.+|+|+|....-.........++..+.++...+..
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 577889999999999977642 2333333 358899999998654444444446677777777666555
Q ss_pred h
Q 004686 162 H 162 (737)
Q Consensus 162 ~ 162 (737)
.
T Consensus 375 ~ 375 (824)
T COG5635 375 L 375 (824)
T ss_pred H
Confidence 4
No 406
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.79 E-value=0.0075 Score=59.56 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+-|.++|+.|+|||++++.+....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 567999999999999999988754
No 407
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.77 E-value=0.0094 Score=55.42 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=30.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.|+|+|+||+|+|||||+++++.+..+.|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999999888886555554
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.77 E-value=0.0082 Score=56.83 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999985
No 409
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.76 E-value=0.029 Score=56.75 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
...++.++|++|+||||++..++..++..-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 458999999999999999999999776543334444
No 410
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.75 E-value=0.043 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999864
No 411
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.063 Score=50.29 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999985
No 412
>PRK14528 adenylate kinase; Provisional
Probab=95.73 E-value=0.028 Score=52.28 Aligned_cols=24 Identities=42% Similarity=0.474 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.|+|.|++|+||||+|+.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 413
>PRK08356 hypothetical protein; Provisional
Probab=95.73 E-value=0.09 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLY 36 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~ 36 (737)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999994
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.72 E-value=0.0056 Score=57.04 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhh-cccccccchhhhHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-ERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~l~~~ 93 (737)
-..++|.|+.|+||||+++.++..+.... ..+.+....+..... .... ++.. .............+.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 35899999999999999999988665332 233332211111000 0000 0000 0000001112334455566
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcC
Q 004686 94 LCRKRVLVILDDVDQLEQLQALVGN 118 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~~~~l~~~ 118 (737)
++..+=.++++.+.+.+.++.+...
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHHHH
Confidence 6677788899999888776655443
No 415
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.72 E-value=0.02 Score=60.77 Aligned_cols=92 Identities=22% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc-CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhh----hHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK----GINLI 90 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~l 90 (737)
..++|+|++|+|||+|++.+++.+.... +..+++... -.....+.++.+.+-.++.....+.+..... ..-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLI--gERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLV--DERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEE--eCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999764322 332232211 2223344444444322222222222221111 11122
Q ss_pred HHHh--cCCeEEEEEcCCCCh
Q 004686 91 RWRL--CRKRVLVILDDVDQL 109 (737)
Q Consensus 91 ~~~l--~~~~~LlilDd~~~~ 109 (737)
-+++ .++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 2222 579999999998544
No 416
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.036 Score=51.89 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|+|.|+.|+||||.++.++..+++..-.+++..
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998877655555543
No 417
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.70 E-value=0.017 Score=50.64 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~ 50 (737)
++|.|+|+.|+||||+++.+++.+. ..+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 5899999999999999999999776 4555555554
No 418
>PRK14529 adenylate kinase; Provisional
Probab=95.69 E-value=0.054 Score=51.42 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=46.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.|+|.|++|+||||+++.++..+.- +.+....+.. .+.........+++++.. ....+.+-....+.+.++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~------G~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDR------GDLVPDDITIPMILETLK 73 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhc------cCcchHHHHHHHHHHHHh
Confidence 3789999999999999999987632 1221111110 011112233334444433 111222333445555553
Q ss_pred CC-eEEEEEcCCC-ChHHHH
Q 004686 96 RK-RVLVILDDVD-QLEQLQ 113 (737)
Q Consensus 96 ~~-~~LlilDd~~-~~~~~~ 113 (737)
+. .--+|||++- +.++.+
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~ 93 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAE 93 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHH
Confidence 31 3459999983 444433
No 419
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.68 E-value=0.053 Score=51.14 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=46.5
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhccc-ChHHHHHHHHHHHhhcccc--cccchhhhHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDL--IIWDVHKGIN 88 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~ 88 (737)
...+.++.+.|.+|+|||+++..+..... ....+++. ...+.... ...++.. . ...... ...+......
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~-~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----A-DPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----H-HCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----h-hhhhhHHHHHHHHHHHHH
Confidence 35678999999999999999999988653 23444443 22222222 1222222 1 110000 0012233345
Q ss_pred HHHHHhcCCeEEEEEcCCCCh-HHHHHHhcC
Q 004686 89 LIRWRLCRKRVLVILDDVDQL-EQLQALVGN 118 (737)
Q Consensus 89 ~l~~~l~~~~~LlilDd~~~~-~~~~~l~~~ 118 (737)
.+.+..-.+++=||+|..-.. +....+...
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~ 114 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIRE 114 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHH
Confidence 555555567778888987543 334434433
No 420
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.68 E-value=0.07 Score=50.29 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
-+|+|.||+|+|||||..-+.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998874
No 421
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.68 E-value=0.021 Score=55.12 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=33.7
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
...+....++..+|+|+|++|+||||+.-++...+.++-..+..+
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 334445556778999999999999999999998776655444443
No 422
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.68 E-value=0.095 Score=57.40 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=30.9
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.+.+....+...-|.|+|+.|+|||++|+.+...-...-...+.+.
T Consensus 199 ~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~ 245 (509)
T PRK05022 199 LKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLN 245 (509)
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEE
Confidence 33344433334457899999999999999999985433323345554
No 423
>PRK06547 hypothetical protein; Provisional
Probab=95.68 E-value=0.011 Score=53.84 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
....+|+|.|++|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999864
No 424
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.061 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|+|||||++.++-..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 599999999999999999998754
No 425
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.043 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
..++|.||.|.|||||++.+.-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999986
No 426
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.65 E-value=0.014 Score=55.59 Aligned_cols=28 Identities=43% Similarity=0.601 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+...+|+|.|++|+||||+++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4558999999999999999999998654
No 427
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.65 E-value=0.011 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.++|+|.|++|+||||+++.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999864
No 428
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.038 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..+|.|+|++|+||||++.+++.....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999886543
No 429
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.64 E-value=0.078 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++.+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 37999999999999999999864
No 430
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.64 E-value=0.017 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..+|+|.|++|+||||+|+.++...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999997754
No 431
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.62 E-value=0.042 Score=53.42 Aligned_cols=91 Identities=19% Similarity=0.036 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh----cccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-------cccccc--
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-------DLIIWD-- 82 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~-- 82 (737)
+.++|.|.+|+|||+|+.+++++.. .+-+..+|+.. -.+...+.++.+++...-.... .+.+.-
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~I---GeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAM---GITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEe---ccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 5889999999999999999988653 22345566542 1233455566665554411110 011100
Q ss_pred -----hhhhHHHHHHHhcCCeEEEEEcCCCCh
Q 004686 83 -----VHKGINLIRWRLCRKRVLVILDDVDQL 109 (737)
Q Consensus 83 -----~~~~~~~l~~~l~~~~~LlilDd~~~~ 109 (737)
..-.+++....-++++.|+++||+-..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 011122222222378999999998443
No 432
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.62 E-value=0.025 Score=62.04 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=46.2
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHH
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLS 70 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (737)
..|.+++.++-+.-+++.|.|++|+|||+++.++++..... -..++|+. ...+..++.+++..
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis------~ee~~~~i~~~~~~ 81 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT------FEESPEDIIRNVAS 81 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE------ccCCHHHHHHHHHH
Confidence 45667777777778999999999999999999998854444 45677765 34566666665543
No 433
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.61 E-value=0.022 Score=51.47 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+|.|.|+.|+|||+|..+.+.+++++|...+...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 479999999999999999999999998888766654
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.60 E-value=0.046 Score=53.91 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
++.+-||.++|..|+||||.+-++++.+++.-..++..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla 173 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA 173 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence 34578999999999999999999999776554444433
No 435
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.60 E-value=0.027 Score=51.17 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.+++|.|+.|+|||||.+.++-... .....+++... .... .+..+.. .+.++.. ......+...-.+-+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~-~~~~~~~---~~~i~~~--~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF-ASPRDAR---RAGIAMV--YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc-CCHHHHH---hcCeEEE--EecCHHHHHHHHHHHHHh
Confidence 4899999999999999999986432 23344554321 1111 0111110 0111100 001111222223334444
Q ss_pred CCeEEEEEcCCCCh---HHHHHHhcCCCCC-CCCcEEEEEeCCchh
Q 004686 96 RKRVLVILDDVDQL---EQLQALVGNHDWF-GFGSRIIITSRDEHV 137 (737)
Q Consensus 96 ~~~~LlilDd~~~~---~~~~~l~~~l~~~-~~~~~iliTtR~~~~ 137 (737)
.++-++++|+.... ...+.+...+... ..+..||++|.+...
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 67788899986322 2222222222111 236678888888653
No 436
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.59 E-value=0.072 Score=50.50 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccC
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~ 44 (737)
......|.++|++|.||||..+++..-+.+.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 335678999999999999999999886655544
No 437
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.036 Score=51.18 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc---ccCc--eEEEeecchhhcc-cChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD---QFEA--SSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~---~f~~--~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
.-..+.|++|+||||+.+.++.-+.. .|.. +..++-..+.... .... +.++...+. .........-.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvp--q~~~g~R~d-----Vld~cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVP--QHGRGRRMD-----VLDPCPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCc--hhhhhhhhh-----hcccchHHHHH
Confidence 34788999999999999999984432 3422 2333211111110 0011 111111110 00011111111
Q ss_pred HHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCch
Q 004686 90 IRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEH 136 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 136 (737)
....-.--+=++|+|.+-+.++..+.+..+ ..|.+++.|...-.
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 122222346699999999888866666664 47888888777543
No 438
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.57 E-value=0.17 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
..++-+|+|..|+|||||...++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 457999999999999999999986
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.56 E-value=0.023 Score=51.31 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..++++|+|+.|+|||||+++++..++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987754
No 440
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.00054 Score=64.52 Aligned_cols=100 Identities=17% Similarity=0.050 Sum_probs=75.1
Q ss_pred CCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccccccc-ccccCccccceecc
Q 004686 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNL 477 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 477 (737)
+.+.+.|++-||++..+.- ...|+.|++|.|+-|.+.+. ..+..|++|++|.|..|.+...-. ..+.++|+|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4567788888998886532 46789999999999976644 347789999999999987643211 45788999999999
Q ss_pred ccccccccCcc-----ccCCCCCccEEE
Q 004686 478 KDCRNLVSFPK-----NVCLMKSLKILC 500 (737)
Q Consensus 478 ~~n~~~~~~~~-----~~~~l~~L~~L~ 500 (737)
..|+..+.-+. .+.-+++|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99887665442 346688888886
No 441
>PRK03839 putative kinase; Provisional
Probab=95.55 E-value=0.012 Score=54.66 Aligned_cols=23 Identities=48% Similarity=0.762 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+++.++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.54 E-value=0.012 Score=55.66 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.1
Q ss_pred hhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 7 YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 7 ~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
|+-...+..+.|+|+|++|+|||||++.+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44455566789999999999999999998753
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.51 E-value=0.012 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...|+|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999976
No 444
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.11 Score=46.57 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
+.|++.|+.|+||||+.+.+++++.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4689999999999999999999875443
No 445
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.50 E-value=0.067 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|.|||||++.++-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998864
No 446
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.50 E-value=0.086 Score=57.73 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
..|.|+|+.|+||+.+|+.+...
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999997653
No 447
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.041 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|.|||||++.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998743
No 448
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.48 E-value=0.013 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++|++.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999998753
No 449
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.47 E-value=0.042 Score=62.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+.++||+|+|||.+|+.++...
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 450
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.47 E-value=0.014 Score=49.17 Aligned_cols=36 Identities=31% Similarity=0.274 Sum_probs=26.5
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.+.+...-+.-.+|.+.|.=|+||||++|.++..+
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334444322344799999999999999999999854
No 451
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.46 E-value=0.052 Score=47.60 Aligned_cols=34 Identities=26% Similarity=0.104 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc--ccCceEEEe
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLA 50 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~--~f~~~~~~~ 50 (737)
.+.|.|+.|.|||+++..++.+... ....++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4789999999999999999886543 334455543
No 452
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.46 E-value=0.14 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+.|.|.|++|+|||++|+.++..+.-.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 469999999999999999999987543
No 453
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.45 E-value=0.024 Score=53.46 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
+...+|+|+|++|+||||+|+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999999764433334554
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.44 E-value=0.06 Score=53.08 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.+|+|.|+.|.||||+++.+...+...-..++.+.+..+... ..+ .+ ... .........+.+...++
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q---~~v-~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQ---VQV-NEKAGLTFARGLRAILR 147 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eE---EEe-CCcCCcCHHHHHHHHhc
Confidence 489999999999999999998876442223333332222111 000 00 000 00011234556667777
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeC
Q 004686 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSR 133 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR 133 (737)
..+=.++++++.+.+....+.... ..|..++-|..
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlH 182 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLH 182 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEec
Confidence 788899999999887644333221 23544444444
No 455
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.44 E-value=0.029 Score=57.33 Aligned_cols=36 Identities=22% Similarity=0.075 Sum_probs=25.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
++.+.+........-|.|+|+.|+||+++|+.+...
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 344444433333457899999999999999998774
No 456
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.44 E-value=0.072 Score=58.89 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.++.+|.|.+|+||||+++++...+.+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999886543
No 457
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.098 Score=48.65 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=38.1
Q ss_pred hHHHHHHHhcCCeEEEEEcCCCChHHHHHH------hcCCCCCCCCcEEEEEeCCchhhhhcCcccE
Q 004686 86 GINLIRWRLCRKRVLVILDDVDQLEQLQAL------VGNHDWFGFGSRIIITSRDEHVLKSHGVTNT 146 (737)
Q Consensus 86 ~~~~l~~~l~~~~~LlilDd~~~~~~~~~l------~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~ 146 (737)
...++.+.+-=++-+.|||..|..-+.+++ ...+. .++..+++.|...+++.....+++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEE
Confidence 345566666567889999988665433322 22222 457788888888888877765543
No 458
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.43 E-value=0.021 Score=59.79 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+.|+++|++|+|||++|+.++....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 6799999999999999999998663
No 459
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.017 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.++++|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999999988865
No 460
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.43 E-value=0.062 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004686 18 IGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~ 39 (737)
|+|.|++|+||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998854
No 461
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.43 E-value=0.018 Score=55.01 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
|+|+|.|.||+||||++..++..+.+.-..+..++
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 47899999999999999999997765433444443
No 462
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.42 E-value=0.029 Score=50.19 Aligned_cols=20 Identities=45% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEcCCCCcHHHHHHHHHHHH
Q 004686 20 ICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 20 i~G~~G~GKT~la~~~~~~~ 39 (737)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 463
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.41 E-value=0.038 Score=57.31 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
..++|.||+|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999999985
No 464
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.40 E-value=0.14 Score=58.42 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...|.|+|+.|+|||.+|+.+...-...-...+.+.
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 357999999999999999999875432223444554
No 465
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.39 E-value=0.069 Score=48.60 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchh---hhHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH---KGINLIRWR 93 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l~~~ 93 (737)
+++|.|.+|+|||++|.+++.+... ..+|+. .. ...-.++.+.+.++.... +......+ +....+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia----t~-~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA----TA-QPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc----CC-CCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhh
Confidence 6899999999999999999886422 234443 11 123445667776663322 22222211 122223222
Q ss_pred hcCCeEEEEEcCC
Q 004686 94 LCRKRVLVILDDV 106 (737)
Q Consensus 94 l~~~~~LlilDd~ 106 (737)
.. +.-++++|.+
T Consensus 74 ~~-~~~~VlID~L 85 (170)
T PRK05800 74 AA-PGRCVLVDCL 85 (170)
T ss_pred cC-CCCEEEehhH
Confidence 32 3337899986
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.38 E-value=0.011 Score=51.68 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
.|+|+|++|+||||+++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865443
No 467
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.37 E-value=0.074 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
-++++|+|+.|.||||+.+.+..
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37999999999999999999884
No 468
>PLN02674 adenylate kinase
Probab=95.37 E-value=0.093 Score=50.52 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.....|+|.|++|+||||+|+.++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 334678999999999999999999864
No 469
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.36 E-value=0.061 Score=46.53 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=57.0
Q ss_pred CCCCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCC-CCCCCCCCCcEEeccCccccccccccccCccccceec
Q 004686 399 PEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRT-PDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (737)
..+|+.+.+.. .+..++.. |..+.+|+.+.+..+ ..... ..+..++.|+.+.+.+ .........+..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 44777888774 56667544 888889999999875 33332 2377888899999976 33333335677889999999
Q ss_pred cccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcc
Q 004686 477 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECL 520 (737)
Q Consensus 477 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 520 (737)
+..+ ....-...+.++ +|+.+.+.. .....-...|.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 8763 322223345665 888888765 2222223445555554
No 470
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.34 E-value=0.081 Score=48.01 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhcC
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 96 (737)
++.|.|.+|+|||++|.+++.. ....++|+. ..... -.++.+.|.+.-... .......+. ...+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~-d~em~~rI~~H~~~R-~~~w~t~E~-~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAF-DDEMAERIARHRKRR-PAHWRTIET-PRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcC-CHHHHHHHHHHHHhC-CCCceEeec-HHHHHHHHHh
Confidence 3689999999999999999876 234566764 22222 224555555542222 222222211 2223333321
Q ss_pred --CeEEEEEcCC
Q 004686 97 --KRVLVILDDV 106 (737)
Q Consensus 97 --~~~LlilDd~ 106 (737)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 3347999976
No 471
>PRK00625 shikimate kinase; Provisional
Probab=95.31 E-value=0.016 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.|+++|++|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999763
No 472
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.31 E-value=0.049 Score=54.33 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 83 (737)
+.+++...-.....|+|.|+.|+||||+++.++..+...-..++.+....+... ............+.
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l------------~~~~~~~~~~~~~~ 183 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL------------PGPNQIQIQTRRDE 183 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--------------SCSSEEEEEEETTT
T ss_pred HHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee------------cccceEEEEeecCc
Confidence 344444432335799999999999999999999876555122333322222111 00000000000233
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEE-EEEeCCc
Q 004686 84 HKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRI-IITSRDE 135 (737)
Q Consensus 84 ~~~~~~l~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~i-liTtR~~ 135 (737)
.+..+.+...++..+=.++++++.+.+.+..+... ..|..+ +-|....
T Consensus 184 ~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 184 ISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp BSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred ccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 44566677778878889999999988877775444 457777 5555543
No 473
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.30 E-value=0.032 Score=51.91 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEe
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~ 50 (737)
.|+|+|.||+||||+|...+.++. ++--.+..++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 589999999999999999666543 3312344444
No 474
>PRK05439 pantothenate kinase; Provisional
Probab=95.29 E-value=0.078 Score=53.02 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.+..-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999886654
No 475
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.29 E-value=0.019 Score=57.41 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
|.|+|+|.||+||||++..++..+.+.-..+..++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46899999999999999999986654433454544
No 476
>PRK06217 hypothetical protein; Validated
Probab=95.29 E-value=0.039 Score=51.27 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|.+|+||||+|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999865
No 477
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.9 Score=45.10 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-hhhhhc-CcccEEEcCCCChhhHHHHHhh
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKVRGLDYVEALQLFHL 163 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~l~~~~~~~l~~~ 163 (737)
+++-++|+|+++.+. ...+++-.+-.-+++..+|++|.+. .+.... +....+.+.+ +.++..+.+.+
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 466799999997764 4666766665546667777777654 333322 2233567766 67777777753
No 478
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.26 E-value=0.03 Score=56.72 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
...++|.|+.|+||||+++.++..+..... ++.+....+..... . .... +...........-...+.+...+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~-iv~ied~~El~~~~-~-----~~~~-l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDER-IITIEDTREIFLPH-P-----NYVH-LFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcccc-EEEEcCccccCCCC-C-----CEEE-EEecCCCCCcCccCHHHHHHHHh
Confidence 469999999999999999999876543322 33332222211111 0 0000 00000000011122344555667
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcE-EEEEeCCc
Q 004686 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSR-IIITSRDE 135 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~-iliTtR~~ 135 (737)
+..+=.+++|++...+.++.+... ..|.. ++.|+...
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~----~~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAV----NTGHPGSITTLHAG 253 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHH----hcCCCeEEEEEeCC
Confidence 778888999999987766544433 23333 45666544
No 479
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.25 E-value=0.062 Score=53.27 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+.+|+|.|+.|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988877554
No 480
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.25 E-value=0.069 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++.|.|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999875
No 481
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.24 E-value=0.042 Score=51.92 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
+|+|.|+.|+||||+++.++..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997754
No 482
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.015 Score=51.24 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLY 36 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~ 36 (737)
.|.|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 483
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.23 E-value=0.028 Score=56.63 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...|+|.+.|.|||||||++..++..+.+.-..+..++
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45699999999999999999999997766544444443
No 484
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.23 E-value=0.11 Score=51.46 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHHHh
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 73 (737)
.|.+++. +-..-.+++|.|.+|+|||++|..++..+... -..++|+. ...+..++...++....
T Consensus 8 ~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s 72 (259)
T PF03796_consen 8 ALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLS 72 (259)
T ss_dssp HHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHH
T ss_pred HHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhh
Confidence 3444443 22223589999999999999999999966543 35667754 35566677777666643
No 485
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.019 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
-..++|.||+|+||||+++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999865
No 486
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.59 Score=46.25 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=62.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----cc--cccchhhh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----DL--IIWDVHKG 86 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~--~~~~~~~~ 86 (737)
-.....++|+.|+||+++|..++..+-..-.. . .++.+......+. +. ....+++
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~-------------~----~c~~~~~~~HPD~~~i~p~~~~~~I~idq- 79 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSP-------------E----AAYKISQKIHPDIHEFSPQGKGRLHSIET- 79 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc-------------c----HHHHHhcCCCCCEEEEecCCCCCcCcHHH-
Confidence 34688899999999999999999865221000 0 0111111000000 00 0001111
Q ss_pred HHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhh-cCcccEEEcCCC
Q 004686 87 INLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGL 152 (737)
Q Consensus 87 ~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~l 152 (737)
+..+.+.+ .++.-++|+|+++.. +...+++-.+-.-+++..+|++|.+. .+... .+....+.+.++
T Consensus 80 iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 80 PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 12222222 245568999999766 44677766665556677777666663 33322 222335556554
No 487
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.18 E-value=0.055 Score=56.18 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH--hcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL--KDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~--~~~f~~~~~~~ 50 (737)
++++|.|.+|+|||.||..++.++ ......++++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 589999999999999999999988 55566666665
No 488
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.18 E-value=0.017 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..++|+|+||+|+|||||++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45799999999999999999998854
No 489
>PLN02348 phosphoribulokinase
Probab=95.18 E-value=0.087 Score=53.97 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.+...+|+|.|.+|+||||+|+.++..+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999998754
No 490
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.18 E-value=0.079 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
+|+|.|.+|+||||+++++...++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877543
No 491
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=1.9 Score=41.79 Aligned_cols=108 Identities=10% Similarity=-0.025 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc-----ccccchhhhHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD-----LIIWDVHKGINLI 90 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~l 90 (737)
....++|+.|+||.++|.+++..+--.-+.. . |....+ ++.+......+.. ..+-..++ +..+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~---~----Cg~C~s----C~~i~~~~HPDl~~i~p~~~~I~id~-ir~l 75 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANG---F----CKTCES----CLKILNGKYNDFYLIFDQKNPIKKED-ALSI 75 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCC---C----CCCCHH----HHHHhcCCCCCEEEecCCcccCCHHH-HHHH
Confidence 4678999999999999999998652111100 0 111111 1111111000000 00011111 1122
Q ss_pred HHHh------cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 91 RWRL------CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 91 ~~~l------~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.+.+ .+++=++|+|+++.+. ...+++-.+-+-+++..+|++|.+.
T Consensus 76 ~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~ 128 (261)
T PRK05818 76 INKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNE 128 (261)
T ss_pred HHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECCh
Confidence 2222 1345688999997664 4777777766556788877777754
No 492
>PRK13768 GTPase; Provisional
Probab=95.16 E-value=0.029 Score=55.02 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
.+++|.|++|+||||++..++...+..-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5899999999999999999998765543344444
No 493
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.15 E-value=0.063 Score=56.68 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEeecchhhcccChHHHHHHHHHHHhhc-------ccccccc-----
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLME-------RDLIIWD----- 82 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 82 (737)
..++|.|.+|+|||+|+.+++..... +-+.++++.. -.+...+.++.+++...-... ..+.+.-
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~li---GER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGV---GERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcC---CcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 58999999999999999999986643 3344455431 123344555555555431110 0111100
Q ss_pred --hhhhHHHHHHHhcCCeEEEEEcCCC
Q 004686 83 --VHKGINLIRWRLCRKRVLVILDDVD 107 (737)
Q Consensus 83 --~~~~~~~l~~~l~~~~~LlilDd~~ 107 (737)
....+++....-+++++|+++|++-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 0111222222224899999999983
No 494
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.044 Score=49.46 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.+++|.|+.|.||||+++.++.... .....+++... .... ....+ ....+..... ....+...-.+-..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~----~~~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEE----LRRRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHH----HHhceEEEee--CCHHHHHHHHHHHHHh
Confidence 5999999999999999999987543 23444554421 1110 00111 1111110000 1111122223344444
Q ss_pred CCeEEEEEcCCCCh---HHHHHHhcCCCCC-CCCcEEEEEeCCchhhhh
Q 004686 96 RKRVLVILDDVDQL---EQLQALVGNHDWF-GFGSRIIITSRDEHVLKS 140 (737)
Q Consensus 96 ~~~~LlilDd~~~~---~~~~~l~~~l~~~-~~~~~iliTtR~~~~~~~ 140 (737)
..+-++++|+.... .....+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56788999987322 2222222222111 225678888887654443
No 495
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.026 Score=53.82 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++.|.|+.|.||||+.+.++-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999987
No 496
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.13 E-value=0.15 Score=55.34 Aligned_cols=129 Identities=22% Similarity=0.254 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc--------cCceEEEeecc-hhhcccCh------------HHHHHHHHHHHhh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVR-EVSVTRGL------------VPLQEQLLSEVLM 74 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~--------f~~~~~~~~~~-~~~~~~~~------------~~~~~~i~~~l~~ 74 (737)
..|+|.|+.|+|||||.+.++...... --.+.|+.-.+ ......++ ..-++..+..++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 489999999999999999997643211 01123332111 11111111 2333344444333
Q ss_pred ccccccc------chhhhHHHHHHHhcCCeEEEEEcCC------CChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcC
Q 004686 75 ERDLIIW------DVHKGINLIRWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (737)
Q Consensus 75 ~~~~~~~------~~~~~~~~l~~~l~~~~~LlilDd~------~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~ 142 (737)
+.+.... .-+...-.+-..+-.++-++|||.- +..+.++..+.. ....||+.|.++.......
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-----f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-----FEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhc
Confidence 3222111 1122222344455678889999975 333445544444 3456888888876655444
Q ss_pred cccEEEcC
Q 004686 143 VTNTYKVR 150 (737)
Q Consensus 143 ~~~~~~l~ 150 (737)
...+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 2344444
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.11 E-value=0.018 Score=53.33 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++++|.|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999988653
No 498
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.11 E-value=0.027 Score=56.47 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++|+|+|.||+||||++..++..+.+.-..+..++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57888999999999999999997765544455554
No 499
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.11 E-value=0.016 Score=51.89 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++++.|++|+||||+|+.++.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 500
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.11 E-value=0.084 Score=58.20 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++.+|.|.+|+||||++..+...+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999987654
Done!