Query 004686
Match_columns 737
No_of_seqs 297 out of 4600
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 02:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.8E-37 3.3E-41 334.8 18.7 291 2-306 138-472 (549)
2 3rgz_A Protein brassinosteroid 100.0 2.5E-34 8.4E-39 330.6 13.7 392 334-736 270-766 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.5E-31 1.2E-35 304.4 21.1 378 332-713 150-558 (768)
4 1vt4_I APAF-1 related killer D 100.0 4.7E-31 1.6E-35 291.5 17.2 269 2-298 138-436 (1221)
5 3t6q_A CD180 antigen; protein- 100.0 7.2E-30 2.5E-34 287.1 27.1 384 330-717 78-571 (606)
6 4eco_A Uncharacterized protein 100.0 4.9E-31 1.7E-35 296.0 16.2 218 333-552 81-388 (636)
7 4ecn_A Leucine-rich repeat pro 100.0 4.2E-30 1.4E-34 292.5 22.1 218 332-552 322-630 (876)
8 3t6q_A CD180 antigen; protein- 100.0 9.1E-30 3.1E-34 286.3 24.4 373 333-707 33-490 (606)
9 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-30 9.8E-35 315.6 20.1 289 2-305 134-452 (1249)
10 4eco_A Uncharacterized protein 100.0 4.4E-30 1.5E-34 288.3 19.8 344 331-707 204-601 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 6.3E-29 2.1E-33 282.9 27.8 345 329-707 444-841 (876)
12 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-30 3.2E-34 286.2 20.5 203 514-719 346-571 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-29 1.1E-33 281.9 22.5 335 330-667 53-531 (606)
14 2z63_A TOLL-like receptor 4, v 100.0 1.6E-29 5.6E-34 282.3 14.7 118 583-710 416-535 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-29 8.6E-34 277.0 15.4 373 333-714 21-489 (520)
16 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-28 3.6E-33 275.8 20.1 284 2-302 134-449 (591)
17 2id5_A Lingo-1, leucine rich r 100.0 1.4E-28 4.9E-33 267.8 20.5 325 360-717 14-344 (477)
18 4fmz_A Internalin; leucine ric 100.0 7.4E-28 2.5E-32 250.7 24.6 306 353-706 40-346 (347)
19 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-29 2.5E-33 275.6 16.1 371 333-710 26-514 (549)
20 3v47_A TOLL-like receptor 5B a 100.0 2E-28 6.9E-33 265.2 18.8 302 398-710 77-412 (455)
21 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-27 1.4E-31 252.4 26.9 305 352-707 37-353 (457)
22 3o6n_A APL1; leucine-rich repe 100.0 1E-27 3.5E-32 253.7 21.7 314 355-717 43-363 (390)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4.2E-32 265.6 23.1 342 333-715 52-519 (562)
24 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-27 1.7E-31 267.5 27.4 373 333-707 25-518 (680)
25 3oja_B Anopheles plasmodium-re 100.0 1.5E-27 5E-32 266.4 21.8 312 356-716 50-368 (597)
26 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-27 1.3E-31 273.6 25.6 175 332-506 23-216 (844)
27 1o6v_A Internalin A; bacterial 100.0 1E-26 3.5E-31 251.7 26.8 342 334-707 47-389 (466)
28 1ziw_A TOLL-like receptor 3; i 100.0 1E-26 3.4E-31 265.1 27.0 114 584-707 476-598 (680)
29 4fmz_A Internalin; leucine ric 99.9 2.4E-26 8.2E-31 239.2 25.6 298 333-678 44-343 (347)
30 3j0a_A TOLL-like receptor 5; m 99.9 5.3E-27 1.8E-31 272.5 22.6 373 329-706 44-517 (844)
31 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-27 1.5E-31 259.1 20.2 356 336-707 3-458 (520)
32 2id5_A Lingo-1, leucine rich r 99.9 4E-26 1.4E-30 248.5 22.7 293 333-649 32-333 (477)
33 3v47_A TOLL-like receptor 5B a 99.9 1.3E-26 4.4E-31 251.0 18.4 322 376-707 28-385 (455)
34 2z63_A TOLL-like receptor 4, v 99.9 5.1E-26 1.7E-30 254.0 20.6 177 493-678 346-528 (570)
35 1o6v_A Internalin A; bacterial 99.9 2.8E-25 9.5E-30 240.5 25.2 326 354-709 43-369 (466)
36 1jl5_A Outer protein YOPM; leu 99.9 8.1E-25 2.8E-29 234.4 28.0 325 334-707 72-410 (454)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-25 3.8E-30 249.9 21.8 357 336-707 34-487 (562)
38 1xku_A Decorin; proteoglycan, 99.9 2.2E-25 7.6E-30 229.9 22.3 295 378-704 31-330 (330)
39 4g8a_A TOLL-like receptor 4; l 99.9 7E-26 2.4E-30 256.6 19.9 377 333-719 52-593 (635)
40 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-25 7.7E-30 229.9 21.1 294 378-704 33-331 (332)
41 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-25 4.8E-30 249.0 20.7 188 342-533 14-211 (549)
42 1jl5_A Outer protein YOPM; leu 99.9 2.2E-25 7.4E-30 238.8 20.8 336 332-707 10-371 (454)
43 3bz5_A Internalin-J, INLJ; leu 99.9 4.9E-25 1.7E-29 236.3 22.2 336 333-713 42-394 (457)
44 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-25 7.3E-30 227.4 16.1 244 400-678 50-301 (313)
45 4fcg_A Uncharacterized protein 99.9 1.2E-24 4.3E-29 223.0 19.8 222 400-647 81-312 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-25 1.5E-29 225.2 15.9 251 357-653 50-308 (313)
47 1xku_A Decorin; proteoglycan, 99.9 1E-23 3.6E-28 217.3 25.3 286 357-678 31-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 6E-24 2E-28 219.3 22.3 283 357-678 33-330 (332)
49 3o6n_A APL1; leucine-rich repe 99.9 2.3E-23 8E-28 220.1 24.8 299 332-678 44-349 (390)
50 4fcg_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 219.3 17.0 222 421-678 79-311 (328)
51 3oja_B Anopheles plasmodium-re 99.9 2.8E-23 9.5E-28 231.8 24.8 299 333-668 51-356 (597)
52 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-23 4E-28 238.4 20.9 342 357-708 52-557 (635)
53 2z80_A TOLL-like receptor 2, v 99.9 1.8E-23 6.1E-28 217.7 17.0 275 355-649 29-314 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 1.7E-22 5.7E-27 217.0 22.8 242 381-648 46-291 (440)
55 2z66_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 208.6 18.4 243 381-649 10-261 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 2E-22 6.8E-27 217.2 22.1 242 381-648 57-302 (452)
57 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-22 1.8E-26 218.9 25.5 233 357-647 40-272 (622)
58 2z66_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 209.5 16.5 243 360-626 10-261 (306)
59 3zyi_A Leucine-rich repeat-con 99.9 1.4E-22 4.7E-27 218.4 20.1 221 401-649 55-279 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 1.4E-22 4.9E-27 217.5 19.2 221 401-649 44-268 (440)
61 1z7x_W Ribonuclease inhibitor; 99.9 3.2E-25 1.1E-29 240.5 -2.2 359 333-716 3-421 (461)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-21 5.1E-26 196.6 21.9 202 424-649 33-238 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-21 1.5E-25 211.6 27.4 260 334-652 41-300 (622)
64 2z80_A TOLL-like receptor 2, v 99.9 1.1E-22 3.8E-27 211.7 13.5 242 382-649 35-290 (353)
65 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-23 1.1E-27 212.0 8.3 211 401-647 59-273 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.2E-22 4.1E-27 207.2 6.5 241 379-649 44-309 (312)
67 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-21 1.4E-25 193.4 17.5 221 381-626 14-238 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-22 8.7E-27 205.2 7.6 215 399-649 33-250 (317)
69 3oja_A Leucine-rich immune mol 99.9 6.6E-22 2.3E-26 214.0 10.4 234 399-676 33-270 (487)
70 3oja_A Leucine-rich immune mol 99.8 2.4E-21 8.2E-26 209.6 11.0 213 398-645 56-271 (487)
71 1z7x_W Ribonuclease inhibitor; 99.8 4E-23 1.4E-27 223.9 -4.1 320 333-678 28-408 (461)
72 2z62_A TOLL-like receptor 4, v 99.8 5.1E-20 1.7E-24 184.4 18.7 219 383-648 12-236 (276)
73 2o6q_A Variable lymphocyte rec 99.8 2E-19 6.9E-24 179.2 21.4 148 402-551 18-167 (270)
74 1wwl_A Monocyte differentiatio 99.8 5.5E-22 1.9E-26 202.3 1.4 244 352-627 38-310 (312)
75 2z62_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 182.2 17.6 217 404-678 11-234 (276)
76 2o6q_A Variable lymphocyte rec 99.8 8.1E-19 2.8E-23 174.8 22.4 172 379-551 17-191 (270)
77 1p9a_G Platelet glycoprotein I 99.8 4.1E-19 1.4E-23 178.4 19.3 62 585-647 145-206 (290)
78 3rfs_A Internalin B, repeat mo 99.8 5.8E-20 2E-24 183.2 11.9 180 442-653 59-239 (272)
79 2xwt_C Thyrotropin receptor; s 99.8 2.2E-19 7.7E-24 175.4 15.8 206 389-647 22-237 (239)
80 1p9a_G Platelet glycoprotein I 99.8 6.5E-19 2.2E-23 176.9 18.5 199 353-552 6-206 (290)
81 3rfs_A Internalin B, repeat mo 99.8 3.5E-19 1.2E-23 177.5 15.1 204 400-636 41-246 (272)
82 4glp_A Monocyte differentiatio 99.8 4.2E-19 1.4E-23 180.8 13.6 225 398-649 62-307 (310)
83 2ast_B S-phase kinase-associat 99.8 3.4E-20 1.2E-24 191.7 3.5 224 401-646 48-282 (336)
84 3ogk_B Coronatine-insensitive 99.8 8.8E-21 3E-25 212.5 -2.1 194 354-549 109-326 (592)
85 3ogk_B Coronatine-insensitive 99.8 2.3E-20 8E-25 209.1 0.5 341 334-708 139-528 (592)
86 1h6u_A Internalin H; cell adhe 99.8 5.2E-18 1.8E-22 172.1 16.3 149 466-648 81-229 (308)
87 1h6u_A Internalin H; cell adhe 99.8 6.9E-18 2.4E-22 171.2 16.7 197 398-631 39-235 (308)
88 2xwt_C Thyrotropin receptor; s 99.8 2.7E-18 9.4E-23 167.7 13.2 195 447-668 32-237 (239)
89 4ay9_X Follicle-stimulating ho 99.8 2.3E-17 7.7E-22 170.9 19.5 237 381-647 12-257 (350)
90 2ca6_A RAN GTPase-activating p 99.7 2.4E-19 8.2E-24 189.0 3.6 235 398-652 30-319 (386)
91 2ast_B S-phase kinase-associat 99.7 4.7E-19 1.6E-23 183.2 4.6 229 401-654 71-311 (336)
92 3m19_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 159.7 18.7 131 402-534 16-147 (251)
93 2ca6_A RAN GTPase-activating p 99.7 1.8E-19 6E-24 190.0 0.4 230 401-649 10-287 (386)
94 3m19_A Variable lymphocyte rec 99.7 8E-17 2.7E-21 158.4 18.6 173 379-552 15-190 (251)
95 2p1m_B Transport inhibitor res 99.7 6.1E-20 2.1E-24 205.8 -7.5 341 354-713 102-526 (594)
96 4ay9_X Follicle-stimulating ho 99.7 8.9E-17 3E-21 166.5 15.5 224 403-655 12-242 (350)
97 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 178.4 3.6 230 400-650 22-298 (362)
98 4glp_A Monocyte differentiatio 99.7 9.7E-17 3.3E-21 163.3 12.6 195 354-553 88-306 (310)
99 3goz_A Leucine-rich repeat-con 99.7 3.2E-18 1.1E-22 178.3 1.6 223 404-647 2-264 (362)
100 2p1m_B Transport inhibitor res 99.7 2.8E-19 9.5E-24 200.5 -7.4 318 333-669 130-518 (594)
101 3cvr_A Invasion plasmid antige 99.7 4.8E-16 1.6E-20 169.1 17.9 192 401-635 60-253 (571)
102 3cvr_A Invasion plasmid antige 99.7 5.3E-16 1.8E-20 168.8 17.9 176 357-552 59-241 (571)
103 2o6s_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 147.9 14.4 146 404-551 11-158 (208)
104 4ezg_A Putative uncharacterize 99.7 3.4E-16 1.2E-20 147.5 12.3 150 399-552 43-192 (197)
105 1h6t_A Internalin B; cell adhe 99.6 1.4E-15 4.8E-20 152.7 13.9 164 380-552 48-211 (291)
106 1h6t_A Internalin B; cell adhe 99.6 2.4E-15 8.3E-20 151.0 14.8 172 420-650 43-214 (291)
107 2qen_A Walker-type ATPase; unk 99.6 4.5E-15 1.5E-19 154.2 16.4 278 2-299 22-349 (350)
108 1m9s_A Internalin B; cell inva 99.6 5.9E-16 2E-20 170.5 9.6 77 379-457 44-120 (605)
109 2v9t_B SLIT homolog 2 protein 99.6 7.3E-15 2.5E-19 140.8 14.7 148 382-530 15-164 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 7.5E-15 2.6E-19 140.7 14.7 149 382-531 15-166 (220)
111 2o6s_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 140.6 13.7 128 401-528 29-158 (208)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 6.8E-15 2.3E-19 141.0 14.2 149 402-552 13-164 (220)
113 2v9t_B SLIT homolog 2 protein 99.6 8.5E-15 2.9E-19 140.3 14.7 148 403-552 14-163 (220)
114 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 139.8 12.5 150 378-531 44-194 (197)
115 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4E-19 160.2 16.0 176 352-535 38-214 (605)
116 2xot_A Amphoterin-induced prot 99.6 7.1E-15 2.4E-19 152.8 13.3 148 403-552 21-174 (361)
117 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 138.2 15.6 149 381-531 22-172 (229)
118 1dce_A Protein (RAB geranylger 99.6 3.4E-17 1.2E-21 179.3 -5.1 206 398-642 347-566 (567)
119 2xot_A Amphoterin-induced prot 99.6 1.6E-14 5.6E-19 150.0 14.6 171 381-552 21-200 (361)
120 3e6j_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 137.3 15.4 149 401-552 20-170 (229)
121 1xeu_A Internalin C; cellular 99.6 7.7E-15 2.6E-19 144.8 9.7 150 466-650 37-186 (263)
122 2fna_A Conserved hypothetical 99.5 4.2E-14 1.4E-18 147.2 15.3 267 16-298 31-356 (357)
123 1xeu_A Internalin C; cellular 99.5 1.6E-14 5.4E-19 142.6 8.7 163 380-552 21-183 (263)
124 1w5s_A Origin recognition comp 99.5 3E-13 1E-17 143.8 18.0 261 14-284 49-371 (412)
125 2ell_A Acidic leucine-rich nuc 99.5 4.7E-14 1.6E-18 129.1 9.5 137 399-536 23-165 (168)
126 1dce_A Protein (RAB geranylger 99.5 1.5E-15 5.3E-20 166.2 -0.6 178 443-651 346-548 (567)
127 1w8a_A SLIT protein; signaling 99.5 3E-13 1E-17 126.4 11.9 127 403-531 11-139 (192)
128 2je0_A Acidic leucine-rich nuc 99.4 1.3E-13 4.5E-18 123.3 7.0 125 400-549 17-148 (149)
129 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4.1E-17 122.4 12.8 129 381-510 11-142 (192)
130 3sb4_A Hypothetical leucine ri 99.4 4.2E-13 1.4E-17 137.5 10.5 261 352-642 43-327 (329)
131 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.2E-16 128.6 22.4 256 13-284 43-339 (384)
132 2je0_A Acidic leucine-rich nuc 99.4 5.3E-13 1.8E-17 119.3 8.4 106 445-552 16-124 (149)
133 4b8c_D Glucose-repressible alc 99.4 8E-14 2.7E-18 157.7 3.6 150 400-552 173-327 (727)
134 2ell_A Acidic leucine-rich nuc 99.4 9.1E-13 3.1E-17 120.5 9.5 131 420-552 21-158 (168)
135 2wfh_A SLIT homolog 2 protein 99.4 3E-12 1E-16 119.5 13.0 124 382-506 14-138 (193)
136 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.7E-17 120.8 11.7 126 403-530 13-138 (193)
137 4b8c_D Glucose-repressible alc 99.4 2E-13 6.7E-18 154.5 5.7 172 378-552 173-352 (727)
138 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 8.8E-17 118.4 8.4 128 421-552 17-151 (176)
139 2o6r_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 113.5 13.4 127 403-531 10-137 (177)
140 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 9E-17 118.3 7.3 132 397-531 16-153 (176)
141 2v1u_A Cell division control p 99.3 8.4E-11 2.9E-15 123.6 19.1 271 3-284 30-351 (387)
142 3sb4_A Hypothetical leucine ri 99.3 7.8E-12 2.7E-16 128.0 10.5 57 422-479 100-157 (329)
143 4fs7_A Uncharacterized protein 99.3 3.6E-10 1.2E-14 118.7 23.6 235 419-698 158-393 (394)
144 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 111.7 13.0 129 381-510 10-140 (177)
145 2qby_A CDC6 homolog 1, cell di 99.3 5.2E-11 1.8E-15 125.2 16.3 271 3-284 31-348 (386)
146 1fnn_A CDC6P, cell division co 99.2 1.3E-10 4.5E-15 122.3 17.9 262 12-284 41-351 (389)
147 4fdw_A Leucine rich hypothetic 99.2 8.6E-10 2.9E-14 115.2 21.4 218 401-648 136-357 (401)
148 1ds9_A Outer arm dynein; leuci 99.2 2.7E-13 9.2E-18 127.7 -6.3 147 467-642 15-180 (198)
149 4fdw_A Leucine rich hypothetic 99.1 1.7E-09 5.8E-14 113.0 19.8 236 379-647 136-381 (401)
150 1njg_A DNA polymerase III subu 99.1 5.1E-11 1.7E-15 116.6 7.2 187 2-200 33-231 (250)
151 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.8E-17 122.7 -4.7 133 411-547 36-180 (198)
152 3g39_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 101.9 10.8 101 403-505 12-113 (170)
153 4fs7_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 111.1 17.5 217 442-703 158-376 (394)
154 2r9u_A Variable lymphocyte rec 99.0 8.6E-10 2.9E-14 100.8 10.9 77 403-481 15-92 (174)
155 2chg_A Replication factor C sm 99.0 1.7E-09 5.8E-14 103.9 13.4 175 2-198 27-205 (226)
156 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 99.8 10.8 106 424-531 10-115 (170)
157 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 100.0 10.9 109 425-535 14-122 (174)
158 4gt6_A Cell surface protein; l 98.8 1.5E-07 5.1E-12 98.7 19.1 109 583-705 260-369 (394)
159 3un9_A NLR family member X1; l 98.8 6.5E-10 2.2E-14 115.0 0.8 61 587-647 182-250 (372)
160 4gt6_A Cell surface protein; l 98.8 2.5E-07 8.4E-12 97.0 20.2 262 400-706 114-391 (394)
161 3un9_A NLR family member X1; l 98.8 2.4E-10 8.2E-15 118.2 -3.3 153 400-552 72-250 (372)
162 1sxj_B Activator 1 37 kDa subu 98.8 1.8E-08 6.3E-13 102.7 10.6 170 2-195 31-207 (323)
163 1iqp_A RFCS; clamp loader, ext 98.8 3.7E-08 1.3E-12 100.6 12.4 173 2-198 35-213 (327)
164 2ifg_A High affinity nerve gro 98.7 3E-08 1E-12 102.2 9.4 100 405-506 13-115 (347)
165 2chq_A Replication factor C sm 98.7 1.1E-07 3.8E-12 96.7 12.3 171 3-197 28-204 (319)
166 2ifg_A High affinity nerve gro 98.6 8.3E-08 2.8E-12 98.9 10.6 103 427-531 12-116 (347)
167 2ra8_A Uncharacterized protein 98.6 3.3E-08 1.1E-12 101.2 6.9 146 486-649 164-320 (362)
168 4h09_A Hypothetical leucine ri 98.6 4.7E-06 1.6E-10 86.8 23.3 280 332-645 45-342 (379)
169 1hqc_A RUVB; extended AAA-ATPa 98.6 4.1E-07 1.4E-11 92.6 14.8 236 15-297 38-311 (324)
170 3bos_A Putative DNA replicatio 98.6 1.4E-08 4.6E-13 98.8 3.2 153 14-198 51-218 (242)
171 2ra8_A Uncharacterized protein 98.6 4.7E-08 1.6E-12 100.0 6.6 61 492-552 250-318 (362)
172 3te6_A Regulatory protein SIR3 98.5 1.4E-06 4.8E-11 86.4 15.7 148 13-165 43-211 (318)
173 1jr3_A DNA polymerase III subu 98.5 2.3E-07 7.8E-12 96.6 10.2 184 3-198 27-222 (373)
174 3uk6_A RUVB-like 2; hexameric 98.5 1.1E-06 3.7E-11 91.3 14.5 190 5-198 60-304 (368)
175 2z4s_A Chromosomal replication 98.5 1.1E-07 3.8E-12 100.4 6.5 160 15-196 130-305 (440)
176 1d2n_A N-ethylmaleimide-sensit 98.4 3.4E-06 1.2E-10 83.2 15.9 149 12-189 61-229 (272)
177 1l8q_A Chromosomal replication 98.4 2.3E-06 7.8E-11 86.9 14.3 165 6-195 28-206 (324)
178 1a5t_A Delta prime, HOLB; zinc 98.4 3.8E-06 1.3E-10 85.4 15.1 165 15-196 24-204 (334)
179 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-06 6.5E-11 88.8 12.3 180 3-196 48-234 (353)
180 3eie_A Vacuolar protein sortin 98.4 3.1E-06 1.1E-10 85.6 13.2 158 15-198 51-229 (322)
181 3pfi_A Holliday junction ATP-d 98.3 1.2E-06 4.2E-11 89.6 10.2 163 3-198 40-228 (338)
182 1jbk_A CLPB protein; beta barr 98.3 5.9E-07 2E-11 83.6 7.2 37 3-41 33-69 (195)
183 1sxj_A Activator 1 95 kDa subu 98.3 3.1E-06 1.1E-10 91.5 12.9 166 14-196 76-251 (516)
184 1sxj_E Activator 1 40 kDa subu 98.3 3E-06 1E-10 87.4 11.4 101 96-198 133-238 (354)
185 3h4m_A Proteasome-activating n 98.3 8.3E-06 2.9E-10 81.1 14.3 156 14-196 50-230 (285)
186 3pvs_A Replication-associated 98.3 7.6E-06 2.6E-10 86.1 14.4 164 4-197 41-215 (447)
187 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.4E-05 4.7E-10 80.6 15.8 159 15-198 45-224 (322)
188 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.7E-05 5.7E-10 77.8 15.7 160 14-198 38-223 (262)
189 3syl_A Protein CBBX; photosynt 98.3 2.6E-06 8.9E-11 85.9 10.0 129 14-165 66-217 (309)
190 2qp9_X Vacuolar protein sortin 98.2 6.9E-06 2.4E-10 84.1 13.1 158 15-198 84-262 (355)
191 4h09_A Hypothetical leucine ri 98.2 8.6E-05 2.9E-09 77.1 21.3 85 582-677 257-342 (379)
192 3d8b_A Fidgetin-like protein 1 98.2 1.2E-05 4.2E-10 82.4 14.4 158 15-198 117-296 (357)
193 2zan_A Vacuolar protein sortin 98.1 3.1E-05 1.1E-09 81.7 15.5 159 15-198 167-346 (444)
194 3vfd_A Spastin; ATPase, microt 98.1 3.3E-05 1.1E-09 80.4 14.9 157 15-197 148-326 (389)
195 3u61_B DNA polymerase accessor 98.1 1.4E-05 4.8E-10 81.0 11.1 167 2-196 36-215 (324)
196 3cf0_A Transitional endoplasmi 98.0 8.4E-05 2.9E-09 74.2 15.6 152 14-192 48-223 (301)
197 1sxj_C Activator 1 40 kDa subu 98.0 2.9E-05 1E-09 79.2 12.2 168 3-194 36-209 (340)
198 2gno_A DNA polymerase III, gam 98.0 1.9E-05 6.4E-10 78.5 10.1 139 2-165 7-152 (305)
199 3b9p_A CG5977-PA, isoform A; A 98.0 0.00011 3.9E-09 73.3 14.9 158 15-198 54-234 (297)
200 1io0_A Tropomodulin; LRR prote 97.9 2.7E-06 9.3E-11 78.2 2.3 60 493-552 92-162 (185)
201 4b4t_J 26S protease regulatory 97.9 0.00013 4.6E-09 74.1 14.8 151 13-190 180-354 (405)
202 3e4g_A ATP synthase subunit S, 97.9 5.1E-06 1.7E-10 74.1 3.3 67 584-650 81-153 (176)
203 1io0_A Tropomodulin; LRR prote 97.8 2E-05 6.8E-10 72.3 5.5 61 587-647 92-162 (185)
204 3hu3_A Transitional endoplasmi 97.8 0.00015 5E-09 77.1 12.7 157 14-196 237-414 (489)
205 4b4t_L 26S protease subunit RP 97.8 0.00031 1E-08 72.7 14.5 151 13-190 213-387 (437)
206 3e4g_A ATP synthase subunit S, 97.7 7.4E-06 2.5E-10 73.1 1.8 33 401-433 62-95 (176)
207 3ec2_A DNA replication protein 97.7 5.2E-05 1.8E-09 69.3 7.6 26 15-40 38-63 (180)
208 1lv7_A FTSH; alpha/beta domain 97.7 0.0003 1E-08 68.4 13.5 154 16-196 46-224 (257)
209 4b4t_H 26S protease regulatory 97.7 0.00059 2E-08 70.4 15.6 151 13-190 241-415 (467)
210 2p65_A Hypothetical protein PF 97.7 6.6E-05 2.2E-09 69.0 8.0 27 15-41 43-69 (187)
211 4b4t_M 26S protease regulatory 97.7 0.00025 8.4E-09 73.4 12.4 151 12-189 212-386 (434)
212 4b4t_I 26S protease regulatory 97.7 0.00029 1E-08 71.8 12.4 151 13-190 214-388 (437)
213 2w58_A DNAI, primosome compone 97.7 5.8E-05 2E-09 70.5 6.6 35 16-50 55-89 (202)
214 2ce7_A Cell division protein F 97.7 0.00045 1.5E-08 72.7 13.9 149 16-190 50-221 (476)
215 3n70_A Transport activator; si 97.7 1.5E-05 5.1E-10 69.9 2.3 24 16-39 25-48 (145)
216 1ofh_A ATP-dependent HSL prote 97.6 0.00021 7E-09 71.9 11.1 26 15-40 50-75 (310)
217 4b4t_K 26S protease regulatory 97.6 0.00026 8.7E-09 73.2 11.6 31 12-42 203-233 (428)
218 2c9o_A RUVB-like 1; hexameric 97.6 0.00047 1.6E-08 73.1 13.8 95 99-196 297-409 (456)
219 3t15_A Ribulose bisphosphate c 97.6 0.00014 4.7E-09 72.1 8.9 27 14-40 35-61 (293)
220 3rw6_A Nuclear RNA export fact 97.6 1E-05 3.4E-10 78.2 0.4 80 467-548 167-258 (267)
221 4fcw_A Chaperone protein CLPB; 97.6 0.00036 1.2E-08 70.1 11.6 35 16-50 48-82 (311)
222 1ojl_A Transcriptional regulat 97.6 0.0002 7E-09 71.3 9.2 24 16-39 26-49 (304)
223 3rw6_A Nuclear RNA export fact 97.5 6.8E-05 2.3E-09 72.4 5.4 87 585-674 167-257 (267)
224 2cvh_A DNA repair and recombin 97.5 0.00038 1.3E-08 65.8 9.7 46 2-50 7-52 (220)
225 2bjv_A PSP operon transcriptio 97.5 0.00018 6E-09 70.5 7.3 35 16-50 30-64 (265)
226 1in4_A RUVB, holliday junction 97.4 0.0005 1.7E-08 69.6 10.6 51 145-197 173-223 (334)
227 2kjq_A DNAA-related protein; s 97.4 0.00011 3.8E-09 64.3 4.9 36 15-50 36-71 (149)
228 2x8a_A Nuclear valosin-contain 97.4 0.0007 2.4E-08 66.2 10.8 124 18-165 47-191 (274)
229 3pxg_A Negative regulator of g 97.4 0.00075 2.6E-08 71.7 11.2 134 3-165 191-338 (468)
230 1g5t_A COB(I)alamin adenosyltr 97.3 0.00035 1.2E-08 63.2 6.8 116 16-135 29-163 (196)
231 1iy2_A ATP-dependent metallopr 97.3 0.0025 8.4E-08 62.7 13.7 146 18-190 76-245 (278)
232 3pxi_A Negative regulator of g 97.3 0.00032 1.1E-08 79.8 8.1 126 16-165 522-675 (758)
233 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0001 3.6E-09 72.1 3.2 74 13-109 121-194 (331)
234 3co5_A Putative two-component 97.3 2.4E-05 8.3E-10 68.3 -1.2 24 16-39 28-51 (143)
235 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00066 2.2E-08 64.9 8.7 48 3-50 11-58 (235)
236 1ixz_A ATP-dependent metallopr 97.3 0.0051 1.7E-07 59.5 15.1 146 18-190 52-221 (254)
237 1jr3_D DNA polymerase III, del 97.3 0.0024 8.2E-08 65.0 13.3 164 3-195 8-183 (343)
238 3hr8_A Protein RECA; alpha and 97.2 0.00062 2.1E-08 68.6 7.7 98 3-109 48-151 (356)
239 1qvr_A CLPB protein; coiled co 97.2 0.00058 2E-08 78.6 8.5 139 3-164 181-344 (854)
240 3cf2_A TER ATPase, transitiona 97.1 0.0015 5.1E-08 73.0 10.6 150 14-190 237-407 (806)
241 2r62_A Cell division protease 97.1 0.00027 9.3E-09 69.2 4.2 127 16-165 45-196 (268)
242 3io5_A Recombination and repai 97.1 0.0013 4.6E-08 64.0 8.8 97 3-109 13-123 (333)
243 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0033 1.1E-07 71.6 13.6 142 3-165 197-362 (758)
244 3pxi_A Negative regulator of g 97.0 0.011 3.7E-07 67.2 17.1 134 3-165 191-338 (758)
245 1v5w_A DMC1, meiotic recombina 97.0 0.0026 8.8E-08 64.4 10.7 48 3-50 110-163 (343)
246 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0054 1.9E-07 64.9 13.4 147 17-190 66-236 (499)
247 3m6a_A ATP-dependent protease 97.0 0.0011 3.6E-08 71.9 7.9 27 15-41 108-134 (543)
248 2qgz_A Helicase loader, putati 97.0 0.0009 3.1E-08 66.6 6.6 46 5-50 141-188 (308)
249 2b8t_A Thymidine kinase; deoxy 97.0 0.00017 5.7E-09 67.5 1.2 111 14-134 11-125 (223)
250 1n0w_A DNA repair protein RAD5 96.9 0.0021 7.1E-08 61.8 8.7 49 2-50 11-65 (243)
251 1xp8_A RECA protein, recombina 96.9 0.002 6.9E-08 65.4 8.6 96 3-107 61-162 (366)
252 2ehv_A Hypothetical protein PH 96.9 0.00075 2.6E-08 65.3 5.2 46 5-50 20-66 (251)
253 1um8_A ATP-dependent CLP prote 96.9 0.0013 4.6E-08 67.8 7.2 26 15-40 72-97 (376)
254 2z43_A DNA repair and recombin 96.9 0.0023 7.8E-08 64.3 8.6 102 3-109 95-215 (324)
255 4a74_A DNA repair and recombin 96.8 0.0031 1E-07 60.0 8.8 37 3-39 13-49 (231)
256 1u94_A RECA protein, recombina 96.7 0.0027 9.2E-08 64.2 7.2 47 4-50 51-98 (356)
257 3bh0_A DNAB-like replicative h 96.6 0.0055 1.9E-07 61.2 9.3 62 3-71 57-118 (315)
258 2zr9_A Protein RECA, recombina 96.6 0.0028 9.4E-08 64.1 7.1 96 3-107 48-149 (349)
259 2i1q_A DNA repair and recombin 96.6 0.0044 1.5E-07 62.3 8.6 37 3-39 86-122 (322)
260 2r44_A Uncharacterized protein 96.6 0.0054 1.9E-07 62.0 9.0 25 17-41 48-72 (331)
261 2orw_A Thymidine kinase; TMTK, 96.5 0.00029 9.8E-09 64.2 -0.9 108 16-135 4-113 (184)
262 3lw7_A Adenylate kinase relate 96.5 0.02 6.8E-07 51.5 11.2 20 16-35 2-21 (179)
263 1ypw_A Transitional endoplasmi 96.4 0.014 4.6E-07 66.4 11.9 127 14-165 237-385 (806)
264 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.003 1E-07 66.9 5.3 24 17-40 43-66 (500)
265 1vma_A Cell division protein F 96.3 0.01 3.5E-07 58.5 8.8 37 14-50 103-139 (306)
266 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0064 2.2E-07 69.2 8.3 24 16-39 489-512 (758)
267 1odf_A YGR205W, hypothetical 3 96.3 0.026 8.8E-07 55.3 11.5 30 11-40 27-56 (290)
268 3sr0_A Adenylate kinase; phosp 96.2 0.017 6E-07 53.3 9.3 23 17-39 2-24 (206)
269 1qvr_A CLPB protein; coiled co 96.2 0.0078 2.7E-07 69.3 8.1 35 16-50 589-623 (854)
270 3umf_A Adenylate kinase; rossm 96.1 0.016 5.4E-07 53.9 8.5 28 12-39 26-53 (217)
271 1ex7_A Guanylate kinase; subst 96.1 0.002 6.7E-08 58.4 2.1 29 16-44 2-30 (186)
272 3bgw_A DNAB-like replicative h 96.1 0.019 6.6E-07 60.1 10.0 61 4-71 187-247 (444)
273 3lda_A DNA repair protein RAD5 96.1 0.015 5.1E-07 59.7 8.9 48 3-50 166-219 (400)
274 1qhx_A CPT, protein (chloramph 96.0 0.0031 1.1E-07 57.1 3.1 25 16-40 4-28 (178)
275 3fwy_A Light-independent proto 96.0 0.0062 2.1E-07 60.5 5.3 38 13-50 46-83 (314)
276 1pzn_A RAD51, DNA repair and r 96.0 0.017 5.8E-07 58.4 8.6 37 3-39 119-155 (349)
277 1j8m_F SRP54, signal recogniti 96.0 0.023 7.8E-07 55.9 9.2 36 15-50 98-133 (297)
278 4a1f_A DNAB helicase, replicat 95.9 0.026 8.8E-07 56.3 9.5 61 4-71 36-96 (338)
279 2dr3_A UPF0273 protein PH0284; 95.9 0.0075 2.6E-07 57.9 5.5 48 3-50 11-58 (247)
280 2zts_A Putative uncharacterize 95.9 0.0054 1.9E-07 59.1 4.5 60 3-68 18-78 (251)
281 3c8u_A Fructokinase; YP_612366 95.9 0.0055 1.9E-07 57.1 4.2 37 4-40 11-47 (208)
282 2q6t_A DNAB replication FORK h 95.9 0.03 1E-06 58.9 10.4 62 3-71 189-251 (444)
283 1tue_A Replication protein E1; 95.8 0.0047 1.6E-07 56.0 3.3 39 2-41 46-84 (212)
284 1q57_A DNA primase/helicase; d 95.8 0.031 1E-06 60.0 10.1 61 4-71 232-293 (503)
285 3kb2_A SPBC2 prophage-derived 95.8 0.0059 2E-07 54.9 3.8 25 16-40 2-26 (173)
286 3kl4_A SRP54, signal recogniti 95.8 0.023 8E-07 58.7 8.7 37 14-50 96-132 (433)
287 1zu4_A FTSY; GTPase, signal re 95.7 0.047 1.6E-06 54.3 10.5 38 13-50 103-140 (320)
288 3jvv_A Twitching mobility prot 95.7 0.015 5.3E-07 58.7 7.1 110 16-138 124-234 (356)
289 1nks_A Adenylate kinase; therm 95.7 0.01 3.5E-07 54.4 5.4 26 16-41 2-27 (194)
290 2xxa_A Signal recognition part 95.7 0.036 1.2E-06 57.6 10.0 37 14-50 99-136 (433)
291 3cf2_A TER ATPase, transitiona 95.7 0.012 4.1E-07 65.7 6.6 148 15-189 511-682 (806)
292 3e70_C DPA, signal recognition 95.7 0.039 1.3E-06 55.0 9.7 28 14-41 128-155 (328)
293 3uie_A Adenylyl-sulfate kinase 95.7 0.011 3.7E-07 54.6 5.4 27 14-40 24-50 (200)
294 1sky_E F1-ATPase, F1-ATP synth 95.7 0.039 1.3E-06 57.2 9.8 27 17-43 153-179 (473)
295 1xjc_A MOBB protein homolog; s 95.6 0.01 3.5E-07 52.5 4.6 35 14-48 3-38 (169)
296 3hjn_A DTMP kinase, thymidylat 95.6 0.027 9.3E-07 51.6 7.6 33 17-49 2-34 (197)
297 3dm5_A SRP54, signal recogniti 95.6 0.029 9.9E-07 58.0 8.6 36 14-49 99-134 (443)
298 3trf_A Shikimate kinase, SK; a 95.6 0.0068 2.3E-07 55.2 3.5 24 16-39 6-29 (185)
299 3vaa_A Shikimate kinase, SK; s 95.5 0.0076 2.6E-07 55.6 3.6 25 15-39 25-49 (199)
300 4eun_A Thermoresistant glucoki 95.5 0.069 2.4E-06 49.1 10.2 25 15-39 29-53 (200)
301 2ffh_A Protein (FFH); SRP54, s 95.5 0.031 1.1E-06 57.7 8.3 36 14-49 97-132 (425)
302 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0066 2.3E-07 55.1 2.9 61 492-552 96-168 (197)
303 3ice_A Transcription terminati 95.5 0.021 7.1E-07 57.2 6.6 26 16-41 175-200 (422)
304 1ly1_A Polynucleotide kinase; 95.4 0.0088 3E-07 54.2 3.7 22 16-37 3-24 (181)
305 1rz3_A Hypothetical protein rb 95.4 0.017 5.8E-07 53.4 5.7 38 3-40 9-47 (201)
306 2yvu_A Probable adenylyl-sulfa 95.4 0.018 6.1E-07 52.4 5.8 28 14-41 12-39 (186)
307 3a00_A Guanylate kinase, GMP k 95.4 0.0069 2.4E-07 55.2 2.9 28 16-43 2-29 (186)
308 1kgd_A CASK, peripheral plasma 95.4 0.0078 2.7E-07 54.5 3.1 25 16-40 6-30 (180)
309 2rhm_A Putative kinase; P-loop 95.4 0.012 4.2E-07 53.9 4.4 26 14-39 4-29 (193)
310 2plr_A DTMP kinase, probable t 95.3 0.023 7.8E-07 53.0 6.3 27 16-42 5-31 (213)
311 3cmu_A Protein RECA, recombina 95.3 0.016 5.5E-07 70.7 6.1 95 4-107 1415-1515(2050)
312 2j37_W Signal recognition part 95.2 0.078 2.7E-06 56.0 10.6 37 14-50 100-136 (504)
313 2r6a_A DNAB helicase, replicat 95.2 0.049 1.7E-06 57.5 9.2 59 4-69 193-252 (454)
314 1zp6_A Hypothetical protein AT 95.2 0.01 3.6E-07 54.3 3.5 24 15-38 9-32 (191)
315 1nlf_A Regulatory protein REPA 95.2 0.072 2.5E-06 52.0 9.7 27 15-41 30-56 (279)
316 2px0_A Flagellar biosynthesis 95.2 0.051 1.8E-06 53.4 8.5 36 15-50 105-141 (296)
317 2z0h_A DTMP kinase, thymidylat 95.1 0.027 9.4E-07 51.7 6.2 25 17-41 2-26 (197)
318 1kht_A Adenylate kinase; phosp 95.1 0.013 4.4E-07 53.7 3.8 25 16-40 4-28 (192)
319 1kag_A SKI, shikimate kinase I 95.1 0.0099 3.4E-07 53.4 2.9 24 16-39 5-28 (173)
320 3ney_A 55 kDa erythrocyte memb 95.1 0.011 3.7E-07 53.9 3.1 26 15-40 19-44 (197)
321 3tau_A Guanylate kinase, GMP k 95.1 0.012 4E-07 54.8 3.4 26 15-40 8-33 (208)
322 3iij_A Coilin-interacting nucl 95.1 0.0094 3.2E-07 54.0 2.7 25 15-39 11-35 (180)
323 2ze6_A Isopentenyl transferase 95.1 0.014 4.8E-07 56.1 4.0 25 16-40 2-26 (253)
324 3zq6_A Putative arsenical pump 95.1 0.028 9.7E-07 56.3 6.4 48 3-50 2-49 (324)
325 1zuh_A Shikimate kinase; alpha 95.1 0.013 4.5E-07 52.3 3.5 26 15-40 7-32 (168)
326 2ck3_D ATP synthase subunit be 95.1 0.049 1.7E-06 56.3 8.1 53 16-71 154-207 (482)
327 3rfe_A Platelet glycoprotein I 95.0 0.032 1.1E-06 47.1 5.7 33 424-456 32-65 (130)
328 1gvn_B Zeta; postsegregational 95.0 0.021 7.2E-07 56.0 5.2 26 14-39 32-57 (287)
329 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4E-07 54.6 3.2 24 16-39 19-42 (202)
330 3cmw_A Protein RECA, recombina 95.0 0.024 8.2E-07 68.3 6.5 87 13-108 730-821 (1706)
331 3rfe_A Platelet glycoprotein I 95.0 0.037 1.3E-06 46.7 6.0 54 382-436 12-68 (130)
332 3tlx_A Adenylate kinase 2; str 95.0 0.015 5E-07 55.6 3.8 26 14-39 28-53 (243)
333 1y63_A LMAJ004144AAA protein; 94.9 0.016 5.4E-07 52.7 3.8 25 14-38 9-33 (184)
334 2v3c_C SRP54, signal recogniti 94.9 0.019 6.6E-07 59.6 4.9 36 15-50 99-134 (432)
335 2j9r_A Thymidine kinase; TK1, 94.9 0.056 1.9E-06 49.5 7.4 109 15-135 28-138 (214)
336 1ls1_A Signal recognition part 94.9 0.059 2E-06 52.9 8.2 37 14-50 97-133 (295)
337 1ukz_A Uridylate kinase; trans 94.9 0.018 6.2E-07 53.3 4.2 27 13-39 13-39 (203)
338 1knq_A Gluconate kinase; ALFA/ 94.9 0.019 6.7E-07 51.5 4.2 25 15-39 8-32 (175)
339 2bdt_A BH3686; alpha-beta prot 94.9 0.016 5.5E-07 52.9 3.7 22 16-37 3-24 (189)
340 1via_A Shikimate kinase; struc 94.9 0.015 5.1E-07 52.3 3.4 23 17-39 6-28 (175)
341 1ye8_A Protein THEP1, hypothet 94.9 0.015 5.1E-07 52.4 3.3 24 17-40 2-25 (178)
342 2qor_A Guanylate kinase; phosp 94.8 0.012 4.2E-07 54.5 2.8 26 15-40 12-37 (204)
343 2jaq_A Deoxyguanosine kinase; 94.8 0.016 5.5E-07 53.7 3.6 24 17-40 2-25 (205)
344 1nn5_A Similar to deoxythymidy 94.8 0.022 7.7E-07 53.1 4.6 28 15-42 9-36 (215)
345 3tr0_A Guanylate kinase, GMP k 94.8 0.016 5.6E-07 53.6 3.5 24 16-39 8-31 (205)
346 1tev_A UMP-CMP kinase; ploop, 94.8 0.02 6.7E-07 52.6 4.0 24 16-39 4-27 (196)
347 2c95_A Adenylate kinase 1; tra 94.8 0.017 5.7E-07 53.1 3.5 24 16-39 10-33 (196)
348 3cm0_A Adenylate kinase; ATP-b 94.7 0.02 6.9E-07 52.0 4.0 25 15-39 4-28 (186)
349 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.027 9.4E-07 54.4 5.1 26 15-40 4-29 (260)
350 2iyv_A Shikimate kinase, SK; t 94.7 0.014 4.7E-07 53.1 2.8 24 16-39 3-26 (184)
351 1qf9_A UMP/CMP kinase, protein 94.7 0.025 8.5E-07 51.8 4.5 25 15-39 6-30 (194)
352 1e6c_A Shikimate kinase; phosp 94.7 0.015 5.1E-07 52.2 2.8 24 16-39 3-26 (173)
353 2pbr_A DTMP kinase, thymidylat 94.6 0.048 1.7E-06 49.8 6.4 24 17-40 2-25 (195)
354 3vr4_D V-type sodium ATPase su 94.6 0.047 1.6E-06 56.1 6.6 53 16-71 152-208 (465)
355 3p32_A Probable GTPase RV1496/ 94.6 0.045 1.5E-06 55.6 6.6 39 11-49 75-113 (355)
356 1uf9_A TT1252 protein; P-loop, 94.6 0.022 7.4E-07 52.7 3.9 26 13-38 6-31 (203)
357 2pt5_A Shikimate kinase, SK; a 94.6 0.023 7.9E-07 50.6 3.9 24 17-40 2-25 (168)
358 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.6E-07 53.8 2.4 25 16-40 5-29 (198)
359 2bwj_A Adenylate kinase 5; pho 94.6 0.021 7.1E-07 52.6 3.7 24 16-39 13-36 (199)
360 2cdn_A Adenylate kinase; phosp 94.6 0.023 8E-07 52.4 4.0 25 15-39 20-44 (201)
361 1uj2_A Uridine-cytidine kinase 94.5 0.022 7.4E-07 54.9 3.8 28 13-40 20-47 (252)
362 1htw_A HI0065; nucleotide-bind 94.5 0.034 1.2E-06 48.8 4.7 27 13-39 31-57 (158)
363 2r8r_A Sensor protein; KDPD, P 94.5 0.036 1.2E-06 51.3 5.0 30 16-45 7-37 (228)
364 4edh_A DTMP kinase, thymidylat 94.5 0.062 2.1E-06 49.9 6.7 27 16-42 7-33 (213)
365 2vli_A Antibiotic resistance p 94.5 0.015 5E-07 52.8 2.3 25 15-39 5-29 (183)
366 1rj9_A FTSY, signal recognitio 94.5 0.033 1.1E-06 54.9 5.0 28 14-41 101-128 (304)
367 1cke_A CK, MSSA, protein (cyti 94.5 0.023 7.8E-07 53.6 3.8 24 16-39 6-29 (227)
368 1tf7_A KAIC; homohexamer, hexa 94.5 0.043 1.5E-06 59.1 6.3 46 5-50 271-316 (525)
369 2j41_A Guanylate kinase; GMP, 94.4 0.022 7.5E-07 52.8 3.5 24 16-39 7-30 (207)
370 3fb4_A Adenylate kinase; psych 94.4 0.024 8.3E-07 53.0 3.8 23 17-39 2-24 (216)
371 2ewv_A Twitching motility prot 94.4 0.071 2.4E-06 54.4 7.5 109 15-136 136-245 (372)
372 3asz_A Uridine kinase; cytidin 94.4 0.024 8.3E-07 52.8 3.7 27 14-40 5-31 (211)
373 3zvl_A Bifunctional polynucleo 94.4 0.11 3.7E-06 54.0 9.0 27 13-39 256-282 (416)
374 3end_A Light-independent proto 94.4 0.047 1.6E-06 54.3 5.9 37 14-50 40-76 (307)
375 1np6_A Molybdopterin-guanine d 94.4 0.037 1.3E-06 49.4 4.6 27 15-41 6-32 (174)
376 2if2_A Dephospho-COA kinase; a 94.3 0.023 7.8E-07 52.6 3.4 21 17-37 3-23 (204)
377 1aky_A Adenylate kinase; ATP:A 94.3 0.024 8.1E-07 53.2 3.5 24 16-39 5-28 (220)
378 2bbw_A Adenylate kinase 4, AK4 94.3 0.025 8.7E-07 54.1 3.8 25 15-39 27-51 (246)
379 2wwf_A Thymidilate kinase, put 94.3 0.036 1.2E-06 51.6 4.7 27 15-41 10-36 (212)
380 4eaq_A DTMP kinase, thymidylat 94.3 0.054 1.9E-06 51.0 5.9 28 14-41 25-52 (229)
381 3hws_A ATP-dependent CLP prote 94.3 0.023 7.8E-07 58.2 3.5 25 15-39 51-75 (363)
382 4dzz_A Plasmid partitioning pr 94.3 0.055 1.9E-06 50.0 5.9 35 16-50 2-37 (206)
383 1jjv_A Dephospho-COA kinase; P 94.3 0.025 8.7E-07 52.4 3.6 22 16-37 3-24 (206)
384 1zak_A Adenylate kinase; ATP:A 94.3 0.019 6.5E-07 54.0 2.7 26 15-40 5-30 (222)
385 2pez_A Bifunctional 3'-phospho 94.3 0.047 1.6E-06 49.2 5.3 26 15-40 5-30 (179)
386 3llm_A ATP-dependent RNA helic 94.3 0.22 7.4E-06 47.1 10.2 22 16-37 77-98 (235)
387 2qt1_A Nicotinamide riboside k 94.3 0.028 9.7E-07 52.1 3.8 25 14-38 20-44 (207)
388 4gp7_A Metallophosphoesterase; 94.2 0.023 7.8E-07 50.9 3.0 21 15-35 9-29 (171)
389 1u0j_A DNA replication protein 94.2 0.035 1.2E-06 52.9 4.3 36 4-39 93-128 (267)
390 1s96_A Guanylate kinase, GMP k 94.2 0.023 8E-07 53.0 3.1 25 16-40 17-41 (219)
391 3dl0_A Adenylate kinase; phosp 94.2 0.026 8.8E-07 52.8 3.4 23 17-39 2-24 (216)
392 2fz4_A DNA repair protein RAD2 94.2 0.28 9.7E-06 46.3 10.7 100 18-134 111-228 (237)
393 3l0o_A Transcription terminati 94.2 0.11 3.7E-06 52.0 7.8 26 16-41 176-201 (427)
394 3b9q_A Chloroplast SRP recepto 94.2 0.047 1.6E-06 53.8 5.4 28 14-41 99-126 (302)
395 1znw_A Guanylate kinase, GMP k 94.1 0.026 9E-07 52.3 3.3 24 16-39 21-44 (207)
396 3bs4_A Uncharacterized protein 94.1 0.19 6.6E-06 47.8 9.3 50 1-50 7-56 (260)
397 1gtv_A TMK, thymidylate kinase 94.1 0.02 6.7E-07 53.5 2.4 25 17-41 2-26 (214)
398 3cmu_A Protein RECA, recombina 94.1 0.053 1.8E-06 66.3 6.5 96 3-107 370-471 (2050)
399 1cp2_A CP2, nitrogenase iron p 94.1 0.05 1.7E-06 52.9 5.4 35 16-50 2-36 (269)
400 4hlc_A DTMP kinase, thymidylat 94.1 0.051 1.7E-06 50.1 5.1 29 16-44 3-31 (205)
401 1fx0_B ATP synthase beta chain 94.0 0.07 2.4E-06 55.4 6.5 52 16-70 166-218 (498)
402 1zd8_A GTP:AMP phosphotransfer 94.0 0.027 9.3E-07 53.1 3.3 25 15-39 7-31 (227)
403 3cmw_A Protein RECA, recombina 94.0 0.053 1.8E-06 65.5 6.3 49 2-50 20-69 (1706)
404 3exa_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 54.7 3.5 24 16-39 4-27 (322)
405 3d3q_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 55.4 3.8 25 16-40 8-32 (340)
406 1cr0_A DNA primase/helicase; R 94.0 0.085 2.9E-06 52.0 6.9 36 15-50 35-71 (296)
407 1z6g_A Guanylate kinase; struc 94.0 0.024 8.4E-07 53.0 2.7 24 16-39 24-47 (218)
408 3foz_A TRNA delta(2)-isopenten 94.0 0.037 1.3E-06 53.9 4.0 27 13-39 8-34 (316)
409 3r20_A Cytidylate kinase; stru 94.0 0.034 1.2E-06 52.2 3.7 24 16-39 10-33 (233)
410 4e22_A Cytidylate kinase; P-lo 93.9 0.032 1.1E-06 53.6 3.6 24 16-39 28-51 (252)
411 3iqw_A Tail-anchored protein t 93.9 0.061 2.1E-06 53.8 5.7 37 14-50 15-51 (334)
412 3tqc_A Pantothenate kinase; bi 93.9 0.039 1.3E-06 54.6 4.3 30 12-41 89-118 (321)
413 2jeo_A Uridine-cytidine kinase 93.9 0.036 1.2E-06 53.0 3.9 26 14-39 24-49 (245)
414 2grj_A Dephospho-COA kinase; T 93.9 0.034 1.1E-06 50.7 3.5 26 14-39 11-36 (192)
415 2f6r_A COA synthase, bifunctio 93.9 0.035 1.2E-06 54.3 3.8 25 13-37 73-97 (281)
416 3ug7_A Arsenical pump-driving 93.9 0.084 2.9E-06 53.3 6.8 40 11-50 22-61 (349)
417 1m7g_A Adenylylsulfate kinase; 93.9 0.043 1.5E-06 51.0 4.2 27 14-40 24-50 (211)
418 2p5t_B PEZT; postsegregational 93.8 0.032 1.1E-06 53.7 3.4 27 14-40 31-57 (253)
419 3ld9_A DTMP kinase, thymidylat 93.8 0.083 2.8E-06 49.2 5.9 28 14-41 20-47 (223)
420 2i3b_A HCR-ntpase, human cance 93.8 0.034 1.2E-06 50.5 3.3 24 17-40 3-26 (189)
421 3v9p_A DTMP kinase, thymidylat 93.8 0.064 2.2E-06 50.2 5.2 28 15-42 25-52 (227)
422 2v54_A DTMP kinase, thymidylat 93.8 0.035 1.2E-06 51.3 3.5 24 16-39 5-28 (204)
423 3crm_A TRNA delta(2)-isopenten 93.8 0.036 1.2E-06 54.6 3.6 24 16-39 6-29 (323)
424 3aez_A Pantothenate kinase; tr 93.7 0.038 1.3E-06 54.8 3.8 28 13-40 88-115 (312)
425 2xb4_A Adenylate kinase; ATP-b 93.7 0.04 1.4E-06 51.8 3.8 23 17-39 2-24 (223)
426 1yrb_A ATP(GTP)binding protein 93.7 0.078 2.7E-06 51.2 6.0 27 14-40 13-39 (262)
427 3io3_A DEHA2D07832P; chaperone 93.7 0.066 2.3E-06 53.8 5.5 38 13-50 16-55 (348)
428 1e4v_A Adenylate kinase; trans 93.7 0.04 1.4E-06 51.4 3.7 23 17-39 2-24 (214)
429 4tmk_A Protein (thymidylate ki 93.7 0.092 3.1E-06 48.6 6.1 27 16-42 4-30 (213)
430 2og2_A Putative signal recogni 93.7 0.062 2.1E-06 54.1 5.3 28 14-41 156-183 (359)
431 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.09 3.1E-06 52.6 6.4 103 16-135 172-275 (330)
432 1pgv_A TMD-1, tropomodulin TMD 93.7 0.029 1E-06 50.9 2.5 86 467-552 38-137 (197)
433 3a8t_A Adenylate isopentenyltr 93.6 0.027 9.3E-07 55.7 2.5 24 16-39 41-64 (339)
434 2eyu_A Twitching motility prot 93.6 0.059 2E-06 51.8 4.8 109 15-136 25-134 (261)
435 1a7j_A Phosphoribulokinase; tr 93.6 0.028 9.5E-07 55.2 2.5 27 14-40 4-30 (290)
436 3be4_A Adenylate kinase; malar 93.6 0.042 1.4E-06 51.4 3.7 24 16-39 6-29 (217)
437 2wsm_A Hydrogenase expression/ 93.6 0.067 2.3E-06 50.1 5.1 30 14-43 29-58 (221)
438 3ake_A Cytidylate kinase; CMP 93.6 0.045 1.5E-06 50.7 3.8 23 17-39 4-26 (208)
439 2afh_E Nitrogenase iron protei 93.5 0.065 2.2E-06 52.7 5.1 35 16-50 3-37 (289)
440 2hf9_A Probable hydrogenase ni 93.5 0.072 2.5E-06 50.1 5.2 29 14-42 37-65 (226)
441 3lv8_A DTMP kinase, thymidylat 93.5 0.1 3.5E-06 49.1 6.1 34 15-48 27-61 (236)
442 3nwj_A ATSK2; P loop, shikimat 93.5 0.034 1.1E-06 53.1 2.8 24 16-39 49-72 (250)
443 1vht_A Dephospho-COA kinase; s 93.5 0.05 1.7E-06 50.9 4.0 23 15-37 4-26 (218)
444 2qmh_A HPR kinase/phosphorylas 93.4 0.036 1.2E-06 49.9 2.7 24 16-39 35-58 (205)
445 3lnc_A Guanylate kinase, GMP k 93.4 0.029 9.8E-07 53.2 2.1 24 16-39 28-52 (231)
446 2f1r_A Molybdopterin-guanine d 93.4 0.027 9.1E-07 50.2 1.8 25 16-40 3-27 (171)
447 1ak2_A Adenylate kinase isoenz 93.3 0.049 1.7E-06 51.6 3.7 24 16-39 17-40 (233)
448 2ga8_A Hypothetical 39.9 kDa p 93.3 0.067 2.3E-06 53.3 4.7 31 12-42 21-51 (359)
449 3kjh_A CO dehydrogenase/acetyl 93.3 0.08 2.7E-06 50.7 5.2 33 18-50 3-35 (254)
450 2yhs_A FTSY, cell division pro 93.2 0.078 2.7E-06 55.4 5.2 28 14-41 292-319 (503)
451 3gqb_B V-type ATP synthase bet 93.1 0.08 2.7E-06 54.4 5.0 25 16-40 148-172 (464)
452 2axn_A 6-phosphofructo-2-kinas 93.1 0.4 1.4E-05 51.2 10.6 28 14-41 34-61 (520)
453 2onk_A Molybdate/tungstate ABC 93.0 0.052 1.8E-06 51.5 3.3 22 16-37 25-46 (240)
454 3eph_A TRNA isopentenyltransfe 93.0 0.061 2.1E-06 54.5 3.9 25 16-40 3-27 (409)
455 3tif_A Uncharacterized ABC tra 93.0 0.045 1.5E-06 51.8 2.8 22 16-37 32-53 (235)
456 2qe7_A ATP synthase subunit al 93.0 0.086 2.9E-06 54.8 5.0 50 16-70 163-214 (502)
457 2c61_A A-type ATP synthase non 93.0 0.078 2.7E-06 54.8 4.7 53 16-71 153-209 (469)
458 3b85_A Phosphate starvation-in 92.9 0.042 1.4E-06 50.8 2.5 22 17-38 24-45 (208)
459 2pcj_A ABC transporter, lipopr 92.9 0.045 1.5E-06 51.3 2.7 22 16-37 31-52 (224)
460 1ltq_A Polynucleotide kinase; 92.8 0.061 2.1E-06 53.3 3.7 23 16-38 3-25 (301)
461 1oix_A RAS-related protein RAB 92.8 0.062 2.1E-06 49.0 3.4 24 15-38 29-52 (191)
462 2woo_A ATPase GET3; tail-ancho 92.7 0.12 4.1E-06 51.7 5.6 37 14-50 18-54 (329)
463 1svm_A Large T antigen; AAA+ f 92.7 0.08 2.7E-06 53.8 4.3 29 11-39 165-193 (377)
464 1sq5_A Pantothenate kinase; P- 92.7 0.073 2.5E-06 52.8 4.0 28 13-40 78-105 (308)
465 1g41_A Heat shock protein HSLU 92.7 0.092 3.2E-06 54.3 4.8 27 15-41 50-76 (444)
466 3fkq_A NTRC-like two-domain pr 92.6 0.14 4.9E-06 52.3 6.2 39 12-50 140-179 (373)
467 2orv_A Thymidine kinase; TP4A 92.6 0.24 8.2E-06 45.8 7.0 106 15-134 19-125 (234)
468 2cbz_A Multidrug resistance-as 92.6 0.055 1.9E-06 51.3 2.8 23 16-38 32-54 (237)
469 2wji_A Ferrous iron transport 92.5 0.085 2.9E-06 46.7 3.9 22 16-37 4-25 (165)
470 3gfo_A Cobalt import ATP-bindi 92.5 0.056 1.9E-06 52.4 2.8 22 16-37 35-56 (275)
471 2dyk_A GTP-binding protein; GT 92.5 0.081 2.8E-06 46.4 3.7 22 16-37 2-23 (161)
472 2ck3_A ATP synthase subunit al 92.5 0.15 5.1E-06 53.1 6.1 25 16-40 163-188 (510)
473 1q3t_A Cytidylate kinase; nucl 92.5 0.076 2.6E-06 50.4 3.7 26 14-39 15-40 (236)
474 2d2e_A SUFC protein; ABC-ATPas 92.5 0.068 2.3E-06 51.1 3.3 22 16-37 30-51 (250)
475 3upu_A ATP-dependent DNA helic 92.4 0.12 4.2E-06 54.5 5.6 26 17-42 47-72 (459)
476 2woj_A ATPase GET3; tail-ancho 92.4 0.17 5.8E-06 51.1 6.4 37 14-50 17-55 (354)
477 1b0u_A Histidine permease; ABC 92.4 0.058 2E-06 52.0 2.8 22 16-37 33-54 (262)
478 2r9v_A ATP synthase subunit al 92.4 0.1 3.5E-06 54.3 4.7 50 16-70 176-227 (515)
479 2p67_A LAO/AO transport system 92.4 0.16 5.6E-06 51.1 6.2 30 12-41 53-82 (341)
480 2zu0_C Probable ATP-dependent 92.4 0.069 2.4E-06 51.6 3.3 23 16-38 47-69 (267)
481 2ocp_A DGK, deoxyguanosine kin 92.4 0.08 2.7E-06 50.4 3.7 26 15-40 2-27 (241)
482 1sgw_A Putative ABC transporte 92.4 0.051 1.7E-06 50.4 2.2 22 16-37 36-57 (214)
483 2f9l_A RAB11B, member RAS onco 92.4 0.078 2.7E-06 48.7 3.5 24 15-38 5-28 (199)
484 1ji0_A ABC transporter; ATP bi 92.3 0.062 2.1E-06 51.0 2.8 22 16-37 33-54 (240)
485 4g1u_C Hemin import ATP-bindin 92.2 0.063 2.2E-06 51.8 2.8 22 16-37 38-59 (266)
486 2olj_A Amino acid ABC transpor 92.2 0.063 2.2E-06 51.6 2.8 22 16-37 51-72 (263)
487 2pze_A Cystic fibrosis transme 92.2 0.064 2.2E-06 50.5 2.8 23 16-38 35-57 (229)
488 2ff7_A Alpha-hemolysin translo 92.2 0.064 2.2E-06 51.1 2.8 22 16-37 36-57 (247)
489 1g6h_A High-affinity branched- 92.2 0.064 2.2E-06 51.5 2.8 22 16-37 34-55 (257)
490 1mv5_A LMRA, multidrug resista 92.2 0.07 2.4E-06 50.8 3.0 22 16-37 29-50 (243)
491 4akg_A Glutathione S-transfera 92.2 0.39 1.3E-05 61.1 10.3 145 18-186 1270-1452(2695)
492 1vpl_A ABC transporter, ATP-bi 92.1 0.068 2.3E-06 51.2 2.8 22 16-37 42-63 (256)
493 3igf_A ALL4481 protein; two-do 92.1 0.1 3.5E-06 52.9 4.2 35 16-50 3-37 (374)
494 2qm8_A GTPase/ATPase; G protei 92.0 0.19 6.6E-06 50.3 6.2 29 12-40 52-80 (337)
495 2qi9_C Vitamin B12 import ATP- 92.0 0.071 2.4E-06 50.8 2.8 23 16-38 27-49 (249)
496 2zej_A Dardarin, leucine-rich 92.0 0.073 2.5E-06 48.1 2.8 21 17-37 4-24 (184)
497 1tq4_A IIGP1, interferon-induc 92.0 0.062 2.1E-06 55.2 2.5 33 5-37 59-91 (413)
498 2ghi_A Transport protein; mult 91.9 0.073 2.5E-06 51.2 2.8 22 16-37 47-68 (260)
499 2ixe_A Antigen peptide transpo 91.9 0.074 2.5E-06 51.5 2.8 22 16-37 46-67 (271)
500 2wjg_A FEOB, ferrous iron tran 91.8 0.13 4.5E-06 46.5 4.4 24 14-37 6-29 (188)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.8e-37 Score=334.76 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=224.4
Q ss_pred hhhHHhhhcC-CCCeEEEEEEcCCCCcHHHHHHHHHH----HHhcccCceEEEeecchhhcc--cChHHHHHHHHHHHhh
Q 004686 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVT--RGLVPLQEQLLSEVLM 74 (737)
Q Consensus 2 ~~l~~~l~~~-~~~~~~i~i~G~~G~GKT~la~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~ 74 (737)
++|.++|... .+..++|+|+|+||+||||||+++|+ +++++|+.++|+. ++.. .++.+++++++.+++.
T Consensus 138 ~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~ 213 (549)
T 2a5y_B 138 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKS 213 (549)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhc
Confidence 4667777643 45689999999999999999999996 6889999999997 4443 3678899999999876
Q ss_pred ccc-ccc-----cchhhhHHHHHHHhcCC-eEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcC-cccE
Q 004686 75 ERD-LII-----WDVHKGINLIRWRLCRK-RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG-VTNT 146 (737)
Q Consensus 75 ~~~-~~~-----~~~~~~~~~l~~~l~~~-~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~-~~~~ 146 (737)
... ... .+.+.....+.+.++++ |+||||||||+.+++ .+.. .+|++||||||++.++..+. ....
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 214 EDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp TSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred CcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 532 111 12344578899999996 999999999998865 2221 27999999999998888765 3457
Q ss_pred EEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHH-HHhcCCchhHHH
Q 004686 147 YKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN-RLQEAPNEKVLK 225 (737)
Q Consensus 147 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 225 (737)
+++++|+++++++||.+.+++... .+...+.+.+|+++|+|+|+||+++|+.++.+.+ +|...+. .+.......+..
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCC
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHH
Confidence 999999999999999999865432 3566778999999999999999999999987643 3323222 222223455667
Q ss_pred HHHhhhcCCChhhHhhhh-----------eeecccCCCCHHHHHHhhhcC--CCCch-----------hhHHHHhhcccc
Q 004686 226 VLRISYDGLDRRDKEIFL-----------DIACFFKGKDEDRVRKKLDSC--GFNSD-----------IGIRELLDKSLI 281 (737)
Q Consensus 226 ~~~~s~~~L~~~~~~~~~-----------~~~~~p~~~~~~~l~~~~~~~--g~~~~-----------~~l~~L~~~~l~ 281 (737)
++..||+.||++.+.||. |||+||+++++. +..|.++ |++.. +++++|++++|+
T Consensus 366 ~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl 443 (549)
T 2a5y_B 366 ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGAL 443 (549)
T ss_dssp CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSC
T ss_pred HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCe
Confidence 777888888888888887 999999998776 7789888 66532 369999999999
Q ss_pred eee----cCEEeHhHHHHHHHHHHHhhhc
Q 004686 282 TIV----NNKLWMHDLLQEMGWEIVREHH 306 (737)
Q Consensus 282 ~~~----~~~~~~h~l~~~~~~~~~~~~~ 306 (737)
+.. ..+|+||+++|+||++++.+++
T Consensus 444 ~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 976 2479999999999998777654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-34 Score=330.57 Aligned_cols=392 Identities=20% Similarity=0.188 Sum_probs=199.6
Q ss_pred eEEEEEecCCcccccChhhhhc-CCCCceEEEcccccCCCcccccc---CcceeeeecCCCC-CCCCC--CCCCCCeeEE
Q 004686 334 AVEAIIVDVPEMTELEAKSFST-MSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFN-SLPVS--FRPEKLFKLN 406 (737)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~~~~~~~-~l~~~--~~~~~L~~L~ 406 (737)
.++.+.+..+......+..+.. +++|++|++++|.+++..|..+. +++.|++.++.+. .+|.. ..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 4444455444443222222222 35555555555555544443332 3333333333333 33322 1345555555
Q ss_pred ccCCccc-cccccccCCC-CCcEEecCCCcCCCCCC-CCCC--CCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 407 LCNSRIK-YLWKGIKPLK-ELKFMNLSHSCNLIRTP-DFTG--VPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 407 l~~~~i~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
+++|.+. .+|..+..++ +|+.|++++|.+....+ .+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 5555555 4455454444 55555555555443322 2222 4556666666665555556666666666666666666
Q ss_pred ccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc-ccCcccccCCCCcEEEccCCC--CCCCcC
Q 004686 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKI 558 (737)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~--~~~~~~ 558 (737)
+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|. ...|..
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 55556666666666666666666665556666666666666666666655 455556666666666666655 233333
Q ss_pred ccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccc-------------------------------
Q 004686 559 LSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS------------------------------- 607 (737)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------------------- 607 (737)
+......+......+...... ...+..+++|+.|++++|. ++|.+|.
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNL-FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSE-EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred HhcCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCc-cCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 322222222222222222111 1224556666666666665 3333332
Q ss_pred ---------------------------------------cccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEccccCc
Q 004686 608 ---------------------------------------DIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 608 ---------------------------------------~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 647 (737)
.++.+++|+.|++++|+++ .+|..++.+++|+.|+|++|.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 2233456666777777666 566666667777777777776
Q ss_pred cCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHH----------H----
Q 004686 648 NLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQ----------W---- 713 (737)
Q Consensus 648 ~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------~---- 713 (737)
....+|. .+.++++|+.|+++.| .+++.+|..+.++++|++|++++|.+++..+.. +
T Consensus 668 l~g~ip~--------~l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 668 ISGSIPD--------EVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CCSCCCG--------GGGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred cCCCCCh--------HHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 6666654 4566666666666666 555566666667777777777766664321110 0
Q ss_pred -----HHHhhhhccCcCceeEeeecccc
Q 004686 714 -----LLVYCKINYSFQWVVFAHLIHIL 736 (737)
Q Consensus 714 -----~~~~c~~~~~~~~~~~~~~~~~~ 736 (737)
....|+...+.+|++|+|+|++.
T Consensus 739 ~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 739 GLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEESTTSCCCCSCC--------------
T ss_pred hhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 01258888999999999999874
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.5e-31 Score=304.35 Aligned_cols=378 Identities=21% Similarity=0.212 Sum_probs=249.9
Q ss_pred CceEEEEEecCCcccccChhh---hhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCC-CCCCCeeEE
Q 004686 332 TDAVEAIIVDVPEMTELEAKS---FSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLN 406 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~ 406 (737)
...++.+.+..+.+....... +..+++|++|++++|.+.+..+ ..+.+|+.|++.++.+......+ .+++|++|+
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 229 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEE
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEE
Confidence 456677777777766666655 6788888888888888776555 34567788888877766533333 678888889
Q ss_pred ccCCccc-cccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCc-cccceeccccccccc
Q 004686 407 LCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTL-KRLILLNLKDCRNLV 484 (737)
Q Consensus 407 l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~ 484 (737)
+++|.+. .+|..+..+++|++|++++|.+....+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 8888887 56777888888888888888877665555 77888888888888777777776654 888888888888877
Q ss_pred cCccccCCCCCccEEEccCCCCCcccCcc-cCCCCcccEEEccCccCc-ccCcccccCC-CCcEEEccCCC--CCCCcCc
Q 004686 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQD-LGEVECLEELDVGGTAIR-QIPPSIVQLV-NLKIFSLHGCK--GQPPKIL 559 (737)
Q Consensus 485 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~--~~~~~~~ 559 (737)
.+|..+..+++|++|++++|.+.+.+|.. ++.+++|++|++++|.++ .+|..+..++ +|+.|++++|. ...+...
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 88888888888888888888877777765 788888888888888887 7777777776 78888887776 2222222
Q ss_pred cchhhhcc--cCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCC
Q 004686 560 SSNFFLSL--LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLL 636 (737)
Q Consensus 560 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~ 636 (737)
.......+ .....+.... .....+.++++|++|++++|. +++.+|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhcccCCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 22111111 1111111111 011124455555555555555 44445555555555555555555555 4455555555
Q ss_pred CCCEEccccCccCCCCCCC---CCccceee-------------cccccccccccccccccCCCCceEEEecCCCcccccc
Q 004686 637 KLKILCLEKCRNLKSLPEL---PPEIVFVG-------------AEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQV 700 (737)
Q Consensus 637 ~L~~L~l~~n~~~~~~~~l---~~~L~~l~-------------l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 700 (737)
+|++|++++|.....+|.. .++|+.|+ +.++++|+.|++..| .+.+.+|..+++|++|+.|++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEEC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEEC
Confidence 5555555555544444321 13333333 345667777777776 555566777888888888888
Q ss_pred ccchHHHHHHHHH
Q 004686 701 SKDNLAVTLMKQW 713 (737)
Q Consensus 701 ~~n~~~~~~~~~~ 713 (737)
++|.+++..+..+
T Consensus 546 s~N~l~g~ip~~~ 558 (768)
T 3rgz_A 546 NTNLFNGTIPAAM 558 (768)
T ss_dssp CSSEEESBCCGGG
T ss_pred CCCccCCcCChHH
Confidence 8888876554433
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=4.7e-31 Score=291.51 Aligned_cols=269 Identities=16% Similarity=0.151 Sum_probs=206.0
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHH--HHhcccCc-eEEEeecchhhcccChHHHHHHHHHHHhhccc-
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERD- 77 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~- 77 (737)
++|.++|...+ ..++|+|+|+||+||||||+++++ +++.+|+. ++|+. ++...+...++..+...+.....
T Consensus 138 eeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 138 LKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcc
Confidence 45666776532 368999999999999999999997 57889987 78887 55556677777777765443210
Q ss_pred ---------ccccchhhhHHHHHHHh---cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcCccc
Q 004686 78 ---------LIIWDVHKGINLIRWRL---CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTN 145 (737)
Q Consensus 78 ---------~~~~~~~~~~~~l~~~l---~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~ 145 (737)
..+.+.+...+.+.+.+ .+||+||||||+|+.+.|+.+. +|++||||||++.++..+....
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCe
Confidence 01223444555666655 6899999999999998898863 6999999999998775443333
Q ss_pred EEEcC------CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCC--CHHHHHHHHHHHhc
Q 004686 146 TYKVR------GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR--SVEEWKSALNRLQE 217 (737)
Q Consensus 146 ~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~--~~~~~~~~~~~~~~ 217 (737)
.++++ +|+++|+++||.+..... . .+...+ .|+|+|+||+++|+.++.+ ..++|...
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR--P----QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC--T----TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC--H----HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 34455 899999999999885322 1 122333 3999999999999999875 67788653
Q ss_pred CCchhHHHHHHhhhcCCChhh-HhhhheeecccCCCC--HHHHHHhhhcCCC-CchhhHHHHhhcccceee--cCEEeHh
Q 004686 218 APNEKVLKVLRISYDGLDRRD-KEIFLDIACFFKGKD--EDRVRKKLDSCGF-NSDIGIRELLDKSLITIV--NNKLWMH 291 (737)
Q Consensus 218 ~~~~~~~~~~~~s~~~L~~~~-~~~~~~~~~~p~~~~--~~~l~~~~~~~g~-~~~~~l~~L~~~~l~~~~--~~~~~~h 291 (737)
....+..++..||+.||++. |+||++|++||+++. .+.+..+|.+.|. ..+..+++|++++|++.. ..+|+||
T Consensus 351 -~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 351 -NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429 (1221)
T ss_dssp -SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCC
T ss_pred -ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEeh
Confidence 35779999999999999999 999999999998764 4678899998863 246789999999999986 4689999
Q ss_pred HHHHHHH
Q 004686 292 DLLQEMG 298 (737)
Q Consensus 292 ~l~~~~~ 298 (737)
+++++++
T Consensus 430 DLllELr 436 (1221)
T 1vt4_I 430 SIYLELK 436 (1221)
T ss_dssp CHHHHHH
T ss_pred HHHHHHh
Confidence 9988854
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.2e-30 Score=287.09 Aligned_cols=384 Identities=19% Similarity=0.155 Sum_probs=235.5
Q ss_pred cCCceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc---ccccCcceeeeecCCCCCC--CCCCCCCCCee
Q 004686 330 MGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSL--PVSFRPEKLFK 404 (737)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~~~~~~~~l--~~~~~~~~L~~ 404 (737)
.....++.+.+..+.+.......|..+++|++|++++|.+++..+ ..+.+|++|++.++.+..+ |....+++|++
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 445667777777777777777777777777777777777776433 2345666777777766665 44456778888
Q ss_pred EEccCCcccccc-ccccCCCCCc--EEecCCCcCCCCC------------------------------------------
Q 004686 405 LNLCNSRIKYLW-KGIKPLKELK--FMNLSHSCNLIRT------------------------------------------ 439 (737)
Q Consensus 405 L~l~~~~i~~l~-~~~~~l~~L~--~L~l~~~~~~~~~------------------------------------------ 439 (737)
|++++|.++.++ ..+..+++|+ .|++++|.+....
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence 888888777663 3456666666 5566555443322
Q ss_pred ---------------------------------CC-CCCCCCCcEEeccCccccccccccccCccccceecccccccccc
Q 004686 440 ---------------------------------PD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (737)
Q Consensus 440 ---------------------------------~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (737)
+. +..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC
Confidence 22 445566666666665433 5555666666666666666665555
Q ss_pred CccccCCCCCccEEEccCCCCCcccCc-ccCCCCcccEEEccCccCccc---CcccccCCCCcEEEccCCC--CCCCcCc
Q 004686 486 FPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQI---PPSIVQLVNLKIFSLHGCK--GQPPKIL 559 (737)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~--~~~~~~~ 559 (737)
.|..+..+++|++|++++|.+.+.++. .++.+++|++|++++|.++.+ +..+..+++|+.|++++|. ...+..+
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 555566666666666666665544433 366666777777777666643 4456667777777777665 1122222
Q ss_pred cchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcc--cc--hhhhcC
Q 004686 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS--LP--SSINQL 635 (737)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~--lp--~~l~~l 635 (737)
......+......+..........+.++++|++|++++|. +++..|..+..+++|++|++++|.++. ++ ..+..+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 2211122222222222221112235667777777777777 455566667777777777777777763 22 356777
Q ss_pred CCCCEEccccCccCCCCCCC---CCccceeeccc-------------ccccccccccccccCCCCceEEEecCCCccccc
Q 004686 636 LKLKILCLEKCRNLKSLPEL---PPEIVFVGAED-------------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQ 699 (737)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~l---~~~L~~l~l~~-------------c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 699 (737)
++|++|++++|......|.. .+.|+.|++++ +++| .+++..| .+....+..+..+++|+.|+
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEE
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEe
Confidence 77777777777765544321 15666666554 3445 5566665 45555566788899999999
Q ss_pred cccchHHHHHHHHHHHHh
Q 004686 700 VSKDNLAVTLMKQWLLVY 717 (737)
Q Consensus 700 l~~n~~~~~~~~~~~~~~ 717 (737)
+++|.+.+++...|+..+
T Consensus 554 l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 554 LRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp CTTCCEECSGGGHHHHHH
T ss_pred CCCCCccccCCcHHHHHH
Confidence 999999886665444433
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.9e-31 Score=295.95 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=119.7
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEccccc------CC---------------------------Ccccccc-
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYS------SG---------------------------NLEYLSN- 378 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~---------------------------~~~~~~~- 378 (737)
..++.+.+..+.+....+.+++.+++|++|++++|.+ .+ ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4678888888877766667888888888888888754 11 0000000
Q ss_pred ---Ccceee-------------e-------ecCCCCCCCCCC-CCCCCeeEEccCCcccc------------------cc
Q 004686 379 ---NLRYLK-------------W-------HEYPFNSLPVSF-RPEKLFKLNLCNSRIKY------------------LW 416 (737)
Q Consensus 379 ---~l~~L~-------------~-------~~~~~~~l~~~~-~~~~L~~L~l~~~~i~~------------------l~ 416 (737)
.+..++ + .++.+..+|..+ .+++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 000000 0 011222234333 45566666666666655 55
Q ss_pred cccc--CCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcc-ccc-cccccccCc------cccceecccccccccc
Q 004686 417 KGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTL------KRLILLNLKDCRNLVS 485 (737)
Q Consensus 417 ~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~ 485 (737)
..+. ++++|++|++++|.+....|. +.++++|++|++++|. +.+ .+|..+..+ ++|++|++++|.+. .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 5555 666666666666655544443 5556666666666655 444 455544443 55666666655544 5
Q ss_pred Ccc--ccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCC-CcEEEccCCC
Q 004686 486 FPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCK 552 (737)
Q Consensus 486 ~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~ 552 (737)
+|. .+..+++|++|++++|.+.+.+| .++.+++|++|++++|.++.+|..+..+++ |+.|++++|.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 555 55556666666666655554555 555555555555555555555555555555 5555555554
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.2e-30 Score=292.53 Aligned_cols=218 Identities=16% Similarity=0.208 Sum_probs=118.6
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEE-cccccCCCccccc---------------------------------
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEI-NNLYSSGNLEYLS--------------------------------- 377 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~--------------------------------- 377 (737)
...+..+.+..+.+....+..++.+++|++|++ ++|.+++..+...
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 368999999999888777789999999999999 7776544311100
Q ss_pred ----------------cCcceeeeecCCCCC-------CCCCC-CCCCCeeEEccCCcccc------------------c
Q 004686 378 ----------------NNLRYLKWHEYPFNS-------LPVSF-RPEKLFKLNLCNSRIKY------------------L 415 (737)
Q Consensus 378 ----------------~~l~~L~~~~~~~~~-------l~~~~-~~~~L~~L~l~~~~i~~------------------l 415 (737)
.....+.+.+..+.. +|..+ .+++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 000111111111111 44333 34555555555555554 5
Q ss_pred ccccc--CCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcc-ccc-cccccccCcc-------ccceecccccccc
Q 004686 416 WKGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTLK-------RLILLNLKDCRNL 483 (737)
Q Consensus 416 ~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~ 483 (737)
|..+. ++++|++|++++|.+....|. +.++++|++|++++|. +.+ .+|..+..++ +|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55544 555555555555554444442 5555555555555554 333 3444333333 5555555555444
Q ss_pred ccCcc--ccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCC-CcEEEccCCC
Q 004686 484 VSFPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCK 552 (737)
Q Consensus 484 ~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~ 552 (737)
.+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.++.+|..+..+++ |+.|++++|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 4554 4555555555555555544 444 455555555555555555555555555555 5555555554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=9.1e-30 Score=286.29 Aligned_cols=373 Identities=18% Similarity=0.148 Sum_probs=260.9
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccc---cCcceeeeecCCCCCCC-CCC-CCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLP-VSF-RPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~~~~~~~~l~-~~~-~~~~L~~L~l 407 (737)
..++.+.+..+.+..+....|.++++|++|++++|.+.+..|..+ .+|++|++.++.+..++ ..+ .+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 367899999999999988999999999999999999987766554 46677777777666653 333 6889999999
Q ss_pred cCCccccc-cccccCCCCCcEEecCCCcCCCC-CCCCCCCCCCcEEeccCccccccccccccCccccc--eecccccccc
Q 004686 408 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI--LLNLKDCRNL 483 (737)
Q Consensus 408 ~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~n~~~ 483 (737)
++|.++.+ +..+..+++|++|++++|.+... .+.+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987 56689999999999999988874 35666799999999999988777677888888888 8888888766
Q ss_pred ccCccccCCC---------------------------------------------------CCccEEEccCCCCCcccCc
Q 004686 484 VSFPKNVCLM---------------------------------------------------KSLKILCLCGCLKLEKLPQ 512 (737)
Q Consensus 484 ~~~~~~~~~l---------------------------------------------------~~L~~L~l~~~~~~~~~~~ 512 (737)
+..|..+... .+|+.|++++|.+.+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 5544332211 1566777777776665666
Q ss_pred ccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCC--CcCccchhhhcccCCCCCCCCccccCCCCCCCCCC
Q 004686 513 DLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQP--PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (737)
Q Consensus 513 ~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (737)
.++.+++|++|++++|.++.+|..+..+++|++|++++|.... +..+......+......+..........+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 6788888888888888888888888888888888888877321 22222222222222233332222233346677778
Q ss_pred cEEeccCCCCCCCCc--cccccCCCCCCeEeCCCCCCcc-cchhhhcCCCCCEEccccCccCCCCCC--C--CCccceee
Q 004686 591 QTLDLSDCNLLEGAI--PSDIGSLFSLEAIDLSGNNFFS-LPSSINQLLKLKILCLEKCRNLKSLPE--L--PPEIVFVG 663 (737)
Q Consensus 591 ~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~~~~~~~~--l--~~~L~~l~ 663 (737)
++|++++|.+ ++.. +..+..+++|++|++++|.++. .|..+..+++|++|++++|......+. + .+.|+.|+
T Consensus 353 ~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 8888877773 3222 4556777777777777777763 345667777777777777776544332 1 14555555
Q ss_pred cc-------------cccccccccccccccCCCC-c--eEEEecCCCccccccccchHHH
Q 004686 664 AE-------------DCTSLETISAFAKLSRSPN-I--ALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 664 l~-------------~c~~L~~l~~~~~~~~~~~-~--~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
++ ++++|+.|++..| .+.+. + +..+..+++|+.|++++|.++.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCc
Confidence 43 3567777777666 22221 1 2357788888888888887654
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.9e-30 Score=315.64 Aligned_cols=289 Identities=23% Similarity=0.297 Sum_probs=226.0
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH---HhcccCc-eEEEeecchhhc--ccChHHHHHHHHHHHhhc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEA-SSFLANVREVSV--TRGLVPLQEQLLSEVLME 75 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~---~~~~f~~-~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~ 75 (737)
++|.++|....++.++|+|+|+||+||||||++++++ .+.+|.. ++|+. ++. .......++.++..+...
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~l~~~ 209 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKSGLLMKLQNLCMRLDQE 209 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCchHHHHHHHHHHHHhhhh
Confidence 4677777766677899999999999999999999985 3555654 55766 332 123344466666665543
Q ss_pred cc---ccccchhhhHHHHHHHhcCC--eEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhh-cCcccEEEc
Q 004686 76 RD---LIIWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKV 149 (737)
Q Consensus 76 ~~---~~~~~~~~~~~~l~~~l~~~--~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l 149 (737)
.. ..+.+.+...+.+.+.+.++ |+||||||+|+..+|..+ ++|++||+|||++.++.. ......+++
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~ 282 (1249)
T 3sfz_A 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPV 282 (1249)
T ss_dssp CTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEEC
T ss_pred cccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEe
Confidence 32 22345666777888888877 999999999998776654 579999999999988754 455567899
Q ss_pred CC-CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Q 004686 150 RG-LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAP--------- 219 (737)
Q Consensus 150 ~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~~--------- 219 (737)
.+ |+++++++||.+.+.... +..++.+++|+++|+|+|+||+.+|++++... .+|.+.++.+....
T Consensus 283 ~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 283 ESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp CSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTC
T ss_pred cCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccc
Confidence 85 999999999998874322 22335688999999999999999999998754 46888877775432
Q ss_pred --chhHHHHHHhhhcCCChhhHhhhheeecccCCC--CHHHHHHhhhcCCCCchhhHHHHhhcccceee-cC---EEeHh
Q 004686 220 --NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-NN---KLWMH 291 (737)
Q Consensus 220 --~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~~l~~~~-~~---~~~~h 291 (737)
.+.+..++..||+.|++++|+||++|++||+++ +.+.+.++|..++...+.++++|++++|++.. ++ +|+||
T Consensus 359 ~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h 438 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLH 438 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECC
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEec
Confidence 145889999999999999999999999999886 56788999987776678889999999999987 33 49999
Q ss_pred HHHHHHHHHHHhhh
Q 004686 292 DLLQEMGWEIVREH 305 (737)
Q Consensus 292 ~l~~~~~~~~~~~~ 305 (737)
+++++|+++.+.++
T Consensus 439 ~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 439 DLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhhhHH
Confidence 99999998886654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.4e-30 Score=288.26 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=225.8
Q ss_pred CCceEEEEEecCCccccc-----------------Chhhhh--cCCCCceEEEcccccCCCccccccCcceeeeecCCCC
Q 004686 331 GTDAVEAIIVDVPEMTEL-----------------EAKSFS--TMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFN 391 (737)
Q Consensus 331 ~~~~~~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~ 391 (737)
....++.+.+..+.+... .+..+. .+++|++|++++|.+.+.+|..+.+++.|..++...+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 345566666666655542 334444 6777777777777766666655544333333333333
Q ss_pred C------CCCCC-C------CCCCeeEEccCCccccccc--cccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCc
Q 004686 392 S------LPVSF-R------PEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (737)
Q Consensus 392 ~------l~~~~-~------~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (737)
. +|..+ . +++|++|++++|.++.+|. .+..+++|++|++++|.+....|.+..+++|++|++++|
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 2 33222 1 2567777777777776666 667777777777777766634446666667777777776
Q ss_pred cccccccccccCccc-cceeccccccccccCccccCCCC--CccEEEccCCCCCcccCcccC-------CCCcccEEEcc
Q 004686 457 TRLLEVHQSVGTLKR-LILLNLKDCRNLVSFPKNVCLMK--SLKILCLCGCLKLEKLPQDLG-------EVECLEELDVG 526 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~ 526 (737)
.+. .+|..+..+++ |++|++++|.+. .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|+++
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 554 56666667776 777777776654 5666555543 677777777777666666665 56677777777
Q ss_pred CccCcccCcccc-cCCCCcEEEccCCCCC-CCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCC
Q 004686 527 GTAIRQIPPSIV-QLVNLKIFSLHGCKGQ-PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA 604 (737)
Q Consensus 527 ~~~~~~l~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 604 (737)
+|.++.+|..+. .+++|+.|++++|... +|..... ...+.+.++++|++|++++|.+. .
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~--~ 502 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-----------------DENENFKNTYLLTSIDLRFNKLT--K 502 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-----------------ETTEECTTGGGCCEEECCSSCCC--B
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-----------------cccccccccCCccEEECcCCcCC--c
Confidence 777776666543 3677777777766521 1110000 00001234459999999999965 5
Q ss_pred cccccc--CCCCCCeEeCCCCCCcccchhhhcCCCCCEEcccc------CccCCCCCCCCCccceeeccccccccccccc
Q 004686 605 IPSDIG--SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK------CRNLKSLPELPPEIVFVGAEDCTSLETISAF 676 (737)
Q Consensus 605 ~~~~l~--~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~------n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~ 676 (737)
+|..+. .+++|+.|++++|.++.+|..+..+++|++|+|++ |...+.+|. .+.+|++|+.|++.
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--------~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--------GITLCPSLTQLQIG 574 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--------TGGGCSSCCEEECC
T ss_pred cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH--------HHhcCCCCCEEECC
Confidence 888887 89999999999999999999999999999999955 555555554 45778889999888
Q ss_pred ccccCCCCceEEEecCCCccccccccchHHH
Q 004686 677 AKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
.|. + +.+|..+. ++|+.|++++|.+..
T Consensus 575 ~N~-l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 575 SND-I-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SSC-C-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCc-C-CccCHhHh--CcCCEEECcCCCCcc
Confidence 873 3 55565544 899999999997754
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.3e-29 Score=282.91 Aligned_cols=345 Identities=14% Similarity=0.113 Sum_probs=267.1
Q ss_pred ccCCceEEEEEecCCcccc-----------------cChhhh--hcCCCCceEEEcccccCCCccccccCcceeeeecCC
Q 004686 329 YMGTDAVEAIIVDVPEMTE-----------------LEAKSF--STMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYP 389 (737)
Q Consensus 329 ~~~~~~~~~l~l~~~~~~~-----------------~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~ 389 (737)
......++.+.+..+.+.. ..+..+ ..+++|++|++++|.+.+.+|..+.+++.|..++..
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4456788999999987776 133444 499999999999999999888766655444444444
Q ss_pred CCC------CCCC--------CCCCCCeeEEccCCccccccc--cccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEec
Q 004686 390 FNS------LPVS--------FRPEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNL 453 (737)
Q Consensus 390 ~~~------l~~~--------~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 453 (737)
.+. +|.. ..+++|++|++++|.+..+|. .+..+++|+.|++++|.+. ..|.+..+++|++|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEEC
Confidence 443 3322 234699999999999999998 8999999999999999888 4458889999999999
Q ss_pred cCccccccccccccCccc-cceeccccccccccCccccCCCCC--ccEEEccCCCCCcccCc---ccC--CCCcccEEEc
Q 004686 454 EGCTRLLEVHQSVGTLKR-LILLNLKDCRNLVSFPKNVCLMKS--LKILCLCGCLKLEKLPQ---DLG--EVECLEELDV 525 (737)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~---~l~--~l~~L~~L~l 525 (737)
++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|. .++ .+++|+.|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 998876 88888999999 999999998866 78887777654 99999999998776553 223 3458999999
Q ss_pred cCccCcccCcccc-cCCCCcEEEccCCCC-CCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCC
Q 004686 526 GGTAIRQIPPSIV-QLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG 603 (737)
Q Consensus 526 ~~~~~~~l~~~~~-~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 603 (737)
++|.++.+|..+. .+++|+.|++++|.. .+|..... ...+...++++|+.|+|++|.+.
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~-----------------~~~~~l~nl~~L~~L~Ls~N~L~-- 741 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK-----------------PKDGNYKNTYLLTTIDLRFNKLT-- 741 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS-----------------CTTSCCTTGGGCCEEECCSSCCC--
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhc-----------------cccccccccCCccEEECCCCCCc--
Confidence 9999999998765 789999999999872 22211000 00012345669999999999965
Q ss_pred Ccccccc--CCCCCCeEeCCCCCCcccchhhhcCCCCCEEcccc------CccCCCCCCCCCccceeecccccccccccc
Q 004686 604 AIPSDIG--SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK------CRNLKSLPELPPEIVFVGAEDCTSLETISA 675 (737)
Q Consensus 604 ~~~~~l~--~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~------n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~ 675 (737)
.+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.....+|. .+.+|++|+.|++
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--------~l~~L~~L~~L~L 813 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--------GITTCPSLIQLQI 813 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--------TGGGCSSCCEEEC
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH--------HHhcCCCCCEEEC
Confidence 5888887 89999999999999999999999999999999987 554555554 4577888888888
Q ss_pred cccccCCCCceEEEecCCCccccccccchHHH
Q 004686 676 FAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
..| .+ +.+|..+. ++|+.|++++|.+..
T Consensus 814 s~N-~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 814 GSN-DI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CSS-CC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCC-CC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 887 33 55665544 799999999998754
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=9.3e-30 Score=286.19 Aligned_cols=203 Identities=18% Similarity=0.101 Sum_probs=106.5
Q ss_pred cCCCCcccEEEccCccCccc---CcccccCCCCcEEEccCCC-CCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCC
Q 004686 514 LGEVECLEELDVGGTAIRQI---PPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 589 (737)
Q Consensus 514 l~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (737)
++.+++|++|++++|.++.+ |..+..+++|++|++++|. ...+..+......+......+..........+.++++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 34455555566655555533 4555556666666666655 1222111111111111122222111111123445555
Q ss_pred CcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcc--cchhhhcCCCCCEEccccCccCCCCCCC---CCccceeec
Q 004686 590 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS--LPSSINQLLKLKILCLEKCRNLKSLPEL---PPEIVFVGA 664 (737)
Q Consensus 590 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~~~~~~~~l---~~~L~~l~l 664 (737)
|++|++++|. +.+..|..+..+++|++|++++|.++. +|..+..+++|++|++++|...+..|.. .+.|+.|++
T Consensus 426 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 426 LLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCC-CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 5555555555 333444445555555555555555542 3444555555555555555444333221 134444433
Q ss_pred -------------ccccccccccccccccCCCCceEEEecCC-CccccccccchHHHHHHHHHHHHhhh
Q 004686 665 -------------EDCTSLETISAFAKLSRSPNIALNFLNCF-KLVEDQVSKDNLAVTLMKQWLLVYCK 719 (737)
Q Consensus 665 -------------~~c~~L~~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~c~ 719 (737)
.++++|+.|++..| .+. .+|..+..++ +|+.|++++|.+.+++...|+..+-+
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFN-RIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTS-CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCC-cCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 45678888888877 333 5666688887 59999999999998777777665443
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.1e-29 Score=281.95 Aligned_cols=335 Identities=17% Similarity=0.098 Sum_probs=192.8
Q ss_pred cCCceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccc---cCcceeeeecCCCCCCCC-CC-CCCCCee
Q 004686 330 MGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPV-SF-RPEKLFK 404 (737)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~~~~~~~~l~~-~~-~~~~L~~ 404 (737)
.....++.+.+..+.+..+...+|.++++|++|++++|.+++..|..+ .+|++|++.++.+..++. .+ .+.+|++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 345566677777666666666667777777777777777666555433 345555555555555552 22 5667777
Q ss_pred EEccCCccc--cccccccCCCCCcEEecCCCcCCCCCCC-CC---------------------------CCCCCcEEecc
Q 004686 405 LNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FT---------------------------GVPNLERLNLE 454 (737)
Q Consensus 405 L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~---------------------------~~~~L~~L~l~ 454 (737)
|++++|.+. .+|..+.++++|++|++++|.+....+. +. ...+|++|+++
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 777777766 3566677777777777776655433221 11 11133333333
Q ss_pred Ccccc---------------------------------------------------------------------------
Q 004686 455 GCTRL--------------------------------------------------------------------------- 459 (737)
Q Consensus 455 ~~~~~--------------------------------------------------------------------------- 459 (737)
+|...
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 292 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEe
Confidence 33211
Q ss_pred -----ccccccccCccccceeccccccccccCcc--------------------ccCCCCCccEEEccCCCCCcc--cCc
Q 004686 460 -----LEVHQSVGTLKRLILLNLKDCRNLVSFPK--------------------NVCLMKSLKILCLCGCLKLEK--LPQ 512 (737)
Q Consensus 460 -----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~--~~~ 512 (737)
..+| .+..+++|++|++++|.+ +.+|. .+..+++|++|++++|.+.+. .+.
T Consensus 293 ~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 293 AGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp ESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred cCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh
Confidence 0011 223334455555555443 33331 234556666666666665543 366
Q ss_pred ccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC--CCCC-cCccchhhhcccCCCCCCCCccccCCCCCCCCC
Q 004686 513 DLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK--GQPP-KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 589 (737)
Q Consensus 513 ~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (737)
.+..+++|++|++++|.++.+|..+..+++|+.|++++|. ...+ ..+......+......+.... .....+.++++
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 449 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTS 449 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTT
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCC
Confidence 6778888888888888888888778888888888888876 2222 122222222222222222222 11233667777
Q ss_pred CcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCCCCCEEccccCccCCCCCC-C--CCccceeecc
Q 004686 590 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPE-L--PPEIVFVGAE 665 (737)
Q Consensus 590 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~-l--~~~L~~l~l~ 665 (737)
|++|++++|.+....+|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|+.....|. + .++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 777777777733223566677777777777777777743 44567777777777777765554332 1 1566777666
Q ss_pred cc
Q 004686 666 DC 667 (737)
Q Consensus 666 ~c 667 (737)
++
T Consensus 530 ~N 531 (606)
T 3vq2_A 530 FN 531 (606)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=282.29 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=86.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc--ccchhhhcCCCCCEEccccCccCCCCCCCCCccc
Q 004686 583 RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIV 660 (737)
Q Consensus 583 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~ 660 (737)
.+.++++|++|++++|. +.+..|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|......|.
T Consensus 416 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~------ 488 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------ 488 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------
T ss_pred hhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh------
Confidence 45667777777777777 45556666777778888888887775 4676777778888888888775544443
Q ss_pred eeecccccccccccccccccCCCCceEEEecCCCccccccccchHHHHHH
Q 004686 661 FVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLM 710 (737)
Q Consensus 661 ~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 710 (737)
.+.+|++|+.|++..| .+.+..+..+.+|++|+.|++++|.+++++.
T Consensus 489 --~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 489 --AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp --TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred --hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 3456788888888777 4555555678899999999999999987554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=277.05 Aligned_cols=373 Identities=17% Similarity=0.116 Sum_probs=253.1
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCCCCCCCCeeEEccC
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 409 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~ 409 (737)
..++.+.+..+.+..+....|..+++|++|++++|.+++..|.. +.+|++|++.++.+..+|.. .+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 67888999999988888889999999999999999998876644 45788888888888888877 889999999999
Q ss_pred Ccccc--ccccccCCCCCcEEecCCCcCCCCCCCCCCCCCC--cEEeccCccc--ccccccccc----------------
Q 004686 410 SRIKY--LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVG---------------- 467 (737)
Q Consensus 410 ~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~---------------- 467 (737)
|.+.. +|..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+.
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 99986 46789999999999999987764 335566677 8888888776 344443333
Q ss_pred ----------Cccccceecccccc-------ccccCccccCCC---------------------------CCccEEEccC
Q 004686 468 ----------TLKRLILLNLKDCR-------NLVSFPKNVCLM---------------------------KSLKILCLCG 503 (737)
Q Consensus 468 ----------~l~~L~~L~l~~n~-------~~~~~~~~~~~l---------------------------~~L~~L~l~~ 503 (737)
.+++|+.|++++|. +.+.+| .+..+ ++|++|++++
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 35666777666654 222222 23333 3566666666
Q ss_pred CCCCcccCccc-----CCCCcccEEEccCccCcccC-cccccC---CCCcEEEccCCCCCCCcCccchhhhcccCCCCCC
Q 004686 504 CLKLEKLPQDL-----GEVECLEELDVGGTAIRQIP-PSIVQL---VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNS 574 (737)
Q Consensus 504 ~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~l~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (737)
|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|..............+......+.
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 66655666666 6667777777766666 555 333333 4566666666552111100111111111222222
Q ss_pred CCccccCCCCCCCCCCcEEeccCCCCCCC--CccccccCCCCCCeEeCCCCCCcc-cchh-hhcCCCCCEEccccCccCC
Q 004686 575 DSMCLSFPRFTGLSSLQTLDLSDCNLLEG--AIPSDIGSLFSLEAIDLSGNNFFS-LPSS-INQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 575 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~-lp~~-l~~l~~L~~L~l~~n~~~~ 650 (737)
... .....+..+++|++|++++|.+ ++ .+|..+..+++|++|++++|.++. +|.. +..+++|++|++++|....
T Consensus 336 l~~-~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 336 LTD-TVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCT-TTTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred cCh-hhhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 222 1123466778888888888874 33 355667788888888888888875 7764 6777888888888887655
Q ss_pred CCC-CCCCccceeecc------------cccccccccccccccCCCCceE-EEecCCCccccccccchHHHHHHHHHH
Q 004686 651 SLP-ELPPEIVFVGAE------------DCTSLETISAFAKLSRSPNIAL-NFLNCFKLVEDQVSKDNLAVTLMKQWL 714 (737)
Q Consensus 651 ~~~-~l~~~L~~l~l~------------~c~~L~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~ 714 (737)
.+| .+++.|+.|+++ ++++|+.+++..| .+. .+|. .+..+++|++|++++|.+++++...|+
T Consensus 414 ~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred chhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCC-ccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 444 244677777665 4567888888877 333 3444 488999999999999999988776666
No 16
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=275.84 Aligned_cols=284 Identities=21% Similarity=0.263 Sum_probs=211.0
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH---hcccC-ceEEEeecchhhcccChHHHHH---HHHHHHhh
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFE-ASSFLANVREVSVTRGLVPLQE---QLLSEVLM 74 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~~~~---~i~~~l~~ 74 (737)
++|.+++....+..++|+|+|+||+||||||++++++. +.+|. .++|+.. ... +...++. ++...+..
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~----~~~-~~~~~~~~l~~l~~~l~~ 208 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV----GKQ-DKSGLLMKLQNLCTRLDQ 208 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE----ESC-CHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC----CCC-chHHHHHHHHHHHHHhcc
Confidence 45666676555678999999999999999999999743 67885 6778763 221 2223333 33334332
Q ss_pred cc---cccccchhhhHHHHHHHhcC--CeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhhhcCcccEEEc
Q 004686 75 ER---DLIIWDVHKGINLIRWRLCR--KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (737)
Q Consensus 75 ~~---~~~~~~~~~~~~~l~~~l~~--~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 149 (737)
.. ...+.+.+.....+.+.+.+ +++||||||+|+...++.+ +++++||+|||++.++..... ..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~-~~~~v 280 (591)
T 1z6t_A 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMG-PKYVV 280 (591)
T ss_dssp SCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCS-CEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCC-CceEe
Confidence 11 12234455666777777765 7899999999997766543 568999999999877665432 23443
Q ss_pred ---CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Q 004686 150 ---RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAP------- 219 (737)
Q Consensus 150 ---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~~~~~~~~~~~~~~~~~~------- 219 (737)
++|+.+++++||.+.++.. .....+.+.+|+++|+|+|+||..+|+.++... .+|...++.+....
T Consensus 281 ~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~ 356 (591)
T 1z6t_A 281 PVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKS 356 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCC
T ss_pred ecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhc
Confidence 5899999999999987432 122245788999999999999999999997643 36877777765432
Q ss_pred ----chhHHHHHHhhhcCCChhhHhhhheeecccCCC--CHHHHHHhhhcCCCCchhhHHHHhhcccceeec----CEEe
Q 004686 220 ----NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNSDIGIRELLDKSLITIVN----NKLW 289 (737)
Q Consensus 220 ----~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~~l~~~~~----~~~~ 289 (737)
...+..++..+|+.||+..+.||.++|+||.+. +.+.+..+|...+...+..++.|++++++.... .+|+
T Consensus 357 ~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~ 436 (591)
T 1z6t_A 357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYY 436 (591)
T ss_dssp CSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEE
T ss_pred cccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEE
Confidence 246889999999999999999999999998865 556788888766444577899999999998662 3799
Q ss_pred HhHHHHHHHHHHH
Q 004686 290 MHDLLQEMGWEIV 302 (737)
Q Consensus 290 ~h~l~~~~~~~~~ 302 (737)
||++++++++...
T Consensus 437 ~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 437 LHDLQVDFLTEKN 449 (591)
T ss_dssp CCHHHHHHHHHHT
T ss_pred EcHHHHHHHHhhh
Confidence 9999999998873
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=267.76 Aligned_cols=325 Identities=18% Similarity=0.161 Sum_probs=252.0
Q ss_pred ceEEEcccccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCCeeEEccCCccccc-cccccCCCCCcEEecCCCcCC
Q 004686 360 RLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNL 436 (737)
Q Consensus 360 ~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~ 436 (737)
+.++.+++.++........+++.|++.++.+..++. .+ .+++|++|++++|.+..+ |..|..+++|++|++++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 355566655555444455677777777777776643 23 578999999999999877 567889999999999999887
Q ss_pred CCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccC
Q 004686 437 IRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG 515 (737)
Q Consensus 437 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 515 (737)
..++. +.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 77665 78899999999999888777778889999999999999887777777888899999999999888766666788
Q ss_pred CCCcccEEEccCccCcccCc-ccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEe
Q 004686 516 EVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLD 594 (737)
Q Consensus 516 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 594 (737)
.+++|+.|++++|.+..++. .+..+++|+.|++++|..... . .+......+|++|+
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------------~-~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT----------------------M-TPNCLYGLNLTSLS 230 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE----------------------E-CTTTTTTCCCSEEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc----------------------c-CcccccCccccEEE
Confidence 89999999999998886654 577889999999988752110 0 01123345899999
Q ss_pred ccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccc
Q 004686 595 LSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETI 673 (737)
Q Consensus 595 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l 673 (737)
+++|.+ +...+..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|......|. .+.+|++|+.|
T Consensus 231 l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L 301 (477)
T 2id5_A 231 ITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--------AFRGLNYLRVL 301 (477)
T ss_dssp EESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT--------TBTTCTTCCEE
T ss_pred CcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH--------HhcCcccCCEE
Confidence 999984 43333568899999999999999986654 578999999999999986654443 45678888888
Q ss_pred cccccccCCCCceEEEecCCCccccccccchHHHHHHHHHHHHh
Q 004686 674 SAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLVY 717 (737)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 717 (737)
++..| .+....+..+.+|++|+.|++++|.+.+++...|+...
T Consensus 302 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 302 NVSGN-QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp ECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred ECCCC-cCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhh
Confidence 88877 45555555788999999999999999988777777543
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7.4e-28 Score=250.67 Aligned_cols=306 Identities=15% Similarity=0.173 Sum_probs=200.7
Q ss_pred hhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecC
Q 004686 353 FSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLS 431 (737)
Q Consensus 353 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 431 (737)
+..+++|++|+++++.+..... ..+.++++|++.++.+..++....+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 4456667777777666654321 334566666666666666665446677777777777777764 46777777777777
Q ss_pred CCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccC
Q 004686 432 HSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (737)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 511 (737)
+|.+....+ +..+++|++|++++|.....++ .+..+++|++|++++|..... +. +..+++|+.|++++|.+.+. +
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~-~ 193 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDI-S 193 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCC-G
T ss_pred CCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccc-c
Confidence 776654433 6677777777777776555443 367777777777777664432 32 66777777777777766542 2
Q ss_pred cccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCc
Q 004686 512 QDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (737)
Q Consensus 512 ~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (737)
. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... .+.+..+++|+
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-------------------------~~~~~~l~~L~ 246 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-------------------------LSPLANLSQLT 246 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------------------CGGGTTCTTCC
T ss_pred c-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-------------------------CcchhcCCCCC
Confidence 2 6677777777777777776654 6677777777777765211 11255677788
Q ss_pred EEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccc
Q 004686 592 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLE 671 (737)
Q Consensus 592 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~ 671 (737)
+|++++|.+.. + ..+..+++|++|++++|.++.++ .+..+++|+.|++++|+.....+. .+.+|++|+
T Consensus 247 ~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~ 314 (347)
T 4fmz_A 247 WLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME--------VIGGLTNLT 314 (347)
T ss_dssp EEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH--------HHHTCTTCS
T ss_pred EEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh--------HhhccccCC
Confidence 88888877433 3 34677778888888888777765 577778888888888775443322 245566666
Q ss_pred cccccccccCCCCceEEEecCCCccccccccchHH
Q 004686 672 TISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (737)
Q Consensus 672 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 706 (737)
.+++.+| .+....+ +..+++|++|++++|.++
T Consensus 315 ~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 6666665 3343334 778888888898888764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=7.2e-29 Score=275.56 Aligned_cols=371 Identities=15% Similarity=0.094 Sum_probs=222.0
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCC--CCCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVS--FRPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~--~~~~~L~~L~l 407 (737)
..++.+.+..+.+..+....|..+++|++|++++|.+++..+.. +.+|++|++.++.+..++.. ..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46778888888877777778888888888888888887765543 34566667776666666653 26778888888
Q ss_pred cCCccccc--cccccCCCCCcEEecCCCcCCCCCC--CCCCCCCCcEEeccCccccccccccccCccccceecccccccc
Q 004686 408 CNSRIKYL--WKGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL 483 (737)
Q Consensus 408 ~~~~i~~l--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 483 (737)
++|.++.+ +..+..+++|++|++++|......+ .+..+++|++|++++|.+.+..|..+..+++|++|+++.|...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 88888743 5667888888888888887443333 4777888888888888777766777766666666666554432
Q ss_pred ccCccc-cCCCCCccEEEccCCCCCccc--C-----------------------------cc------------------
Q 004686 484 VSFPKN-VCLMKSLKILCLCGCLKLEKL--P-----------------------------QD------------------ 513 (737)
Q Consensus 484 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-----------------------------~~------------------ 513 (737)
.+|.. +..+++|++|++++|.+.+.. + ..
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 22221 123455555555554443310 0 00
Q ss_pred -----------------------------------------cCCCCcccEEEccCccCcccCccc-ccCCCCcEEEccCC
Q 004686 514 -----------------------------------------LGEVECLEELDVGGTAIRQIPPSI-VQLVNLKIFSLHGC 551 (737)
Q Consensus 514 -----------------------------------------l~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~ 551 (737)
+...++|+.|++++|.++.+|..+ ..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 001234556666666666666555 35777777777776
Q ss_pred CCCC--C---cCccchhhhcccCCCCCCCCcccc-CCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCC
Q 004686 552 KGQP--P---KILSSNFFLSLLLPNKNSDSMCLS-FPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNF 625 (737)
Q Consensus 552 ~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 625 (737)
.... + ..+......+......+....... -..+..+++|++|++++|++. .+|..+..+++|++|++++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhcccccccEEECCCCCc
Confidence 6221 0 001111111111222222211100 011455666777777777643 3666666667777777777766
Q ss_pred cccchhhhcCCCCCEEccccCccCCCCCCCCCccceeeccc-----------ccccccccccccccCCCCceEEEecCCC
Q 004686 626 FSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAED-----------CTSLETISAFAKLSRSPNIALNFLNCFK 694 (737)
Q Consensus 626 ~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~-----------c~~L~~l~~~~~~~~~~~~~~~~~~~~~ 694 (737)
+.+|..+ .++|++|++++|..... +.-.+.|+.|++++ +++|+.|++..| .+.+..+..+..+++
T Consensus 423 ~~l~~~~--~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 423 RVVKTCI--PQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTS 498 (549)
T ss_dssp SCCCTTS--CTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTT
T ss_pred ccccchh--cCCceEEECCCCChhhh-cccCChhcEEECCCCccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcc
Confidence 6555432 23555555555543332 22223455554443 456777777766 555555667889999
Q ss_pred ccccccccchHHHHHH
Q 004686 695 LVEDQVSKDNLAVTLM 710 (737)
Q Consensus 695 L~~L~l~~n~~~~~~~ 710 (737)
|+.|++++|.+.+++.
T Consensus 499 L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 499 LQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred cCEEEecCCCccCCCc
Confidence 9999999999987665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2e-28 Score=265.19 Aligned_cols=302 Identities=14% Similarity=0.057 Sum_probs=178.2
Q ss_pred CCCCCeeEEccCCccccc-cccccCCCCCcEEecCCCcCCCCCC-C--CCCCCCCcEEeccCcccccccccc-ccCcccc
Q 004686 398 RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTP-D--FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRL 472 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L 472 (737)
.+++|++|++++|.+..+ |..+..+++|++|++++|.+....+ . +..+++|++|++++|.+.+..|.. +..+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 345566666666666544 4445566666666666665543211 1 555566666666665554444433 5556666
Q ss_pred ceeccccccccccCccccCCC--CCccEEEccCCCCCcccCcc--------cCCCCcccEEEccCccCc-ccCcccccC-
Q 004686 473 ILLNLKDCRNLVSFPKNVCLM--KSLKILCLCGCLKLEKLPQD--------LGEVECLEELDVGGTAIR-QIPPSIVQL- 540 (737)
Q Consensus 473 ~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~-~l~~~~~~l- 540 (737)
++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.++ ..|..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 666666655555444444443 45555666555544322211 223455666666666554 233333222
Q ss_pred --CCCcEEEccCCCCCCCc------------Cccchhhhcc--cCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCC
Q 004686 541 --VNLKIFSLHGCKGQPPK------------ILSSNFFLSL--LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA 604 (737)
Q Consensus 541 --~~L~~L~l~~~~~~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 604 (737)
++|+.|++++|...... .+.......+ .....+.... .....+..+++|++|++++|. +++.
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~ 314 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNE-INKI 314 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSC-CCEE
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCc-cccc
Confidence 45555555554311000 0000000001 1111111111 112347788999999999998 5556
Q ss_pred ccccccCCCCCCeEeCCCCCCccc-chhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCCC
Q 004686 605 IPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSP 683 (737)
Q Consensus 605 ~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~ 683 (737)
.|..+..+++|++|++++|.++.+ |..+..+++|++|++++|......|. .+.++++|+.|++..| .+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--------SFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCSC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh--------hccccccccEEECCCC-cccc
Confidence 677888999999999999999865 56788999999999999986554443 3567888888888876 4444
Q ss_pred CceEEEecCCCccccccccchHHHHHH
Q 004686 684 NIALNFLNCFKLVEDQVSKDNLAVTLM 710 (737)
Q Consensus 684 ~~~~~~~~~~~L~~L~l~~n~~~~~~~ 710 (737)
..+..+..+++|+.|++++|.+++++.
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCC
Confidence 444467899999999999999987654
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.1e-27 Score=252.40 Aligned_cols=305 Identities=18% Similarity=0.119 Sum_probs=164.1
Q ss_pred hhhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEec
Q 004686 352 SFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNL 430 (737)
Q Consensus 352 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 430 (737)
.+..+++|++|++++|.+++... ..+.++++|++.++.+..++ ...+++|++|++++|.++.++ +..+++|++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 34455555555555555554311 12344555555555555544 224556666666666666553 555666666666
Q ss_pred CCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc
Q 004686 431 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (737)
++|.+... + +..+++|++|++++|.+.+ + .+..+++|++|++++|...+.+ .+..+++|+.|++++|.+.+ +
T Consensus 114 ~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTKL-D-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSCC-C-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCee-c-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 66655443 1 5556666666666655443 2 2555666666666665444444 24555666666666655544 3
Q ss_pred CcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCC
Q 004686 511 PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (737)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (737)
| ++.+++|+.|++++|.++.++ ++.+++|+.|++++|.... ++ +..+++|
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-------------------------ip-~~~l~~L 235 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-------------------------ID-VTPLTQL 235 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-------------------------CC-CTTCTTC
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-------------------------cC-ccccCCC
Confidence 3 555566666666666666552 4556666666666554110 11 3445556
Q ss_pred cEEeccCCCCCCCCccccccCCCCCC----------eEeCCCCCCc-ccchhhhcCCCCCEEccccCccCCCCCCCCCcc
Q 004686 591 QTLDLSDCNLLEGAIPSDIGSLFSLE----------AIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPELPPEI 659 (737)
Q Consensus 591 ~~L~l~~~~~~~~~~~~~l~~~~~L~----------~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L 659 (737)
+.|++++|.+ ++.. +..+++|+ .|++++|.+. .+| +..+++|+.|++++|+.++.+|.-.+.|
T Consensus 236 ~~L~l~~N~l-~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 236 TYFDCSVNPL-TELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp SEEECCSSCC-SCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CEEEeeCCcC-CCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcc
Confidence 6666666652 2221 22333333 3333333322 233 3456667777777776666655444566
Q ss_pred ceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 660 VFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 660 ~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
+.+++++|++|+.+++..| .+.+ + .+++|++|+.|++++|.+++
T Consensus 310 ~~L~l~~~~~L~~L~L~~N-~l~~-l--~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNT-ELTE-L--DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SCCCCTTCTTCCEEECTTC-CCSC-C--CCTTCTTCSEEECCSSCCCB
T ss_pred eEechhhcccCCEEECCCC-cccc-c--ccccCCcCcEEECCCCCCCC
Confidence 6666667777777666665 3333 2 26666777777766666653
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1e-27 Score=253.65 Aligned_cols=314 Identities=18% Similarity=0.149 Sum_probs=235.0
Q ss_pred cCCCCceEEEcccccCCCccc---cccCcceeeeecCCCCCCCC-CC-CCCCCeeEEccCCccccccc-cccCCCCCcEE
Q 004686 355 TMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFM 428 (737)
Q Consensus 355 ~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L 428 (737)
.++++++|+++++.+....+. .+.+++.|++.++.+..++. .+ .+++|++|++++|.+..++. .+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 346667777776665543332 24556666666666655553 22 56788999999998887754 47888999999
Q ss_pred ecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCC
Q 004686 429 NLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL 507 (737)
Q Consensus 429 ~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (737)
++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999888766665 57888999999999887776677788899999999998876543 2567788899999888765
Q ss_pred cccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCC
Q 004686 508 EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGL 587 (737)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (737)
+ +...++|++|++++|.++.+|.. .+++|+.|++++|..... +.+..+
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-------------------------~~l~~l 247 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-------------------------AWLLNY 247 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-------------------------GGGGGC
T ss_pred c-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-------------------------HHHcCC
Confidence 3 33456789999999988877654 357899999988763211 235678
Q ss_pred CCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecccc
Q 004686 588 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDC 667 (737)
Q Consensus 588 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c 667 (737)
++|++|++++|. +++..|..+..+++|+.|++++|.++.+|..+..+++|++|++++|+.. .+|. .+..+
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--------~~~~l 317 (390)
T 3o6n_A 248 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER--------NQPQF 317 (390)
T ss_dssp TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG--------GHHHH
T ss_pred CCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCc--------ccccc
Confidence 899999999998 5556678888999999999999999988877788999999999999744 3332 23567
Q ss_pred cccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHHHHHHh
Q 004686 668 TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLVY 717 (737)
Q Consensus 668 ~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 717 (737)
++|+.|++..| .+... .+..+++|+.|++++|.+.++....|+...
T Consensus 318 ~~L~~L~L~~N-~i~~~---~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 318 DRLENLYLDHN-SIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp TTCSEEECCSS-CCCCC---CCCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CcCCEEECCCC-cccee---CchhhccCCEEEcCCCCccchhHHHHHHHH
Confidence 77777777766 22222 378899999999999999999888886653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=265.63 Aligned_cols=342 Identities=18% Similarity=0.149 Sum_probs=250.2
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCCCCCCCCeeEEccC
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 409 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~ 409 (737)
..++.+.+..+.+..+....|..+++|++|++++|.+++..+.. +.+|++|++.++.+..+|.. .+++|++|++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 67889999999999999899999999999999999998766654 46788888888888888888 899999999999
Q ss_pred Ccccccc--ccccCCCCCcEEecCCCcCCCCCCCCCCCCCC--cEEeccCccc--cccccccccC---------------
Q 004686 410 SRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVGT--------------- 468 (737)
Q Consensus 410 ~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~--------------- 468 (737)
|.+..++ ..+.++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 9999865 6799999999999999987652 35555555 9999988876 3333333322
Q ss_pred -----------cc-------------------------------------------------------ccceeccccccc
Q 004686 469 -----------LK-------------------------------------------------------RLILLNLKDCRN 482 (737)
Q Consensus 469 -----------l~-------------------------------------------------------~L~~L~l~~n~~ 482 (737)
++ +|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 22 455555555555
Q ss_pred cccCcccc-----CCCC--------------------------CccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 483 LVSFPKNV-----CLMK--------------------------SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 483 ~~~~~~~~-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
.+.+|..+ ..++ +|++|++++|.+.... ..+.+++|++|++++|.++
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccc
Confidence 55555544 2222 2344444444332111 1167889999999999998
Q ss_pred c-cCcccccCCCCcEEEccCCCCCC-CcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccc-c
Q 004686 532 Q-IPPSIVQLVNLKIFSLHGCKGQP-PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS-D 608 (737)
Q Consensus 532 ~-l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 608 (737)
. +|..+..+++|+.|++++|.... +. ....+.++++|++|++++|. +++.+|. .
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 423 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFK----------------------VALMTKNMSSLETLDVSLNS-LNSHAYDRT 423 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTH----------------------HHHTTTTCTTCCEEECTTSC-CBSCCSSCC
T ss_pred cchhhhhcccCCCCEEECCCCCcCCccc----------------------chhhhcCCCCCCEEECCCCc-CCCccChhh
Confidence 5 77888999999999999987221 10 00126678899999999998 5553444 4
Q ss_pred ccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceE
Q 004686 609 IGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIAL 687 (737)
Q Consensus 609 l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~ 687 (737)
+..+++|+.|++++|.++ .+|..+. ++|+.|++++|... .+|. .+.++++|+.|++..| .+. .+|.
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~--------~~~~l~~L~~L~L~~N-~l~-~l~~ 490 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK--------DVTHLQALQELNVASN-QLK-SVPD 490 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT--------TTTSSCCCSEEECCSS-CCC-CCCT
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh--------hhcCCCCCCEEECCCC-CCC-CCCH
Confidence 778899999999999887 4443332 68999999999744 4443 3346788888888776 333 3444
Q ss_pred -EEecCCCccccccccchHHHHHHHHHHH
Q 004686 688 -NFLNCFKLVEDQVSKDNLAVTLMKQWLL 715 (737)
Q Consensus 688 -~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 715 (737)
.+..+++|+.|++++|.+.+++...|+.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence 3889999999999999999877776663
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5.1e-27 Score=267.55 Aligned_cols=373 Identities=19% Similarity=0.121 Sum_probs=221.3
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCC-C-CCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l 407 (737)
..++.+.+..+.+..+....|.++++|++|++++|.+.+..+.. +.+|+.|++.++.+..+|.. + .+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56788899988888888888999999999999999888876654 46788888888888888864 3 6789999999
Q ss_pred cCCcccccc-ccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcccccccccccc--Cccccceecccccccc
Q 004686 408 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVG--TLKRLILLNLKDCRNL 483 (737)
Q Consensus 408 ~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~~~ 483 (737)
++|.+..++ ..|..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999998887 4588899999999999988776654 77888999999998876655444433 4577888888777655
Q ss_pred ccCccccCCC---------------------------CCccEEEccCCCCCcccCcccCCCCc--ccEEEccCccCcccC
Q 004686 484 VSFPKNVCLM---------------------------KSLKILCLCGCLKLEKLPQDLGEVEC--LEELDVGGTAIRQIP 534 (737)
Q Consensus 484 ~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~l~ 534 (737)
+..|..+..+ ++|+.|++++|.+.+..+..+..++. |++|++++|.++.++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 4444333222 33444444444444444444444433 555555555554332
Q ss_pred -cccccCCCCcEEEccCCCC--CCCcCccc-------------------------------hhhhcc--cCCCCCCCCcc
Q 004686 535 -PSIVQLVNLKIFSLHGCKG--QPPKILSS-------------------------------NFFLSL--LLPNKNSDSMC 578 (737)
Q Consensus 535 -~~~~~l~~L~~L~l~~~~~--~~~~~~~~-------------------------------~~~~~~--~~~~~~~~~~~ 578 (737)
..++.+++|++|++++|.. ..+..+.. ..+..+ .....+....
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~- 343 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG- 343 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-
Confidence 3344455555555555431 11111110 011111 1111111111
Q ss_pred ccCCCCCCCCCCcEEeccCCCC---------------------------CCCCccccccCCCCCCeEeCCCCCCc-ccc-
Q 004686 579 LSFPRFTGLSSLQTLDLSDCNL---------------------------LEGAIPSDIGSLFSLEAIDLSGNNFF-SLP- 629 (737)
Q Consensus 579 ~~~~~~~~~~~L~~L~l~~~~~---------------------------~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp- 629 (737)
.....+.++++|++|++++|.+ +++..|..+..+++|+.|++++|.++ .+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 1112245555555555555431 12223444555666666666666665 343
Q ss_pred hhhhcCCCCCEEccccCccCCCCCC---CCCccceeecc---------------cccccccccccccccCCCCceEEEec
Q 004686 630 SSINQLLKLKILCLEKCRNLKSLPE---LPPEIVFVGAE---------------DCTSLETISAFAKLSRSPNIALNFLN 691 (737)
Q Consensus 630 ~~l~~l~~L~~L~l~~n~~~~~~~~---l~~~L~~l~l~---------------~c~~L~~l~~~~~~~~~~~~~~~~~~ 691 (737)
..+..+++|++|++++|......+. ..++|+.|+++ +|++|+.|++..| .+....+..+.+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEG 502 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhcc
Confidence 3556666666666666654322111 11444444433 3456666666655 333333445666
Q ss_pred CCCccccccccchHHH
Q 004686 692 CFKLVEDQVSKDNLAV 707 (737)
Q Consensus 692 ~~~L~~L~l~~n~~~~ 707 (737)
+++|++|++++|.++.
T Consensus 503 l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 503 LEKLEILDLQHNNLAR 518 (680)
T ss_dssp CTTCCEEECCSSCCGG
T ss_pred ccccCEEeCCCCCccc
Confidence 7777777777766543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.5e-27 Score=266.37 Aligned_cols=312 Identities=17% Similarity=0.152 Sum_probs=238.9
Q ss_pred CCCCceEEEcccccCCCccc---cccCcceeeeecCCCCCCCC-CC-CCCCCeeEEccCCcccccccc-ccCCCCCcEEe
Q 004686 356 MSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMN 429 (737)
Q Consensus 356 ~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~ 429 (737)
+.+++.++++++.+....+. .+.+|+.|++.++.+..++. .+ .+++|++|++++|.++.++.. |..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777666554332 23456666666666665553 22 567899999999998887654 68899999999
Q ss_pred cCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCc
Q 004686 430 LSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE 508 (737)
Q Consensus 430 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 508 (737)
+++|.+...++. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. + +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 999988877665 67889999999999888777777888999999999998876543 2 5567889999999887654
Q ss_pred ccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCC
Q 004686 509 KLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLS 588 (737)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (737)
+...++|+.|++++|.++.++..+ .++|+.|++++|....+ +.+..++
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-------------------------~~l~~l~ 254 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-------------------------AWLLNYP 254 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-------------------------GGGGGCT
T ss_pred -----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-------------------------hhhccCC
Confidence 344568999999999988776543 46899999988863221 3366788
Q ss_pred CCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeeccccc
Q 004686 589 SLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCT 668 (737)
Q Consensus 589 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~ 668 (737)
+|+.|++++|. +++..|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|... .+|. .+..++
T Consensus 255 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~--------~~~~l~ 324 (597)
T 3oja_B 255 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER--------NQPQFD 324 (597)
T ss_dssp TCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG--------GHHHHT
T ss_pred CCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCc--------ccccCC
Confidence 99999999998 6667788899999999999999999988888888999999999999855 3432 345677
Q ss_pred ccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHHHHHH
Q 004686 669 SLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLV 716 (737)
Q Consensus 669 ~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 716 (737)
+|+.|++..| .+... .+..+++|+.|++++|.+++.....|+..
T Consensus 325 ~L~~L~L~~N-~l~~~---~~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 325 RLENLYLDHN-SIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRN 368 (597)
T ss_dssp TCSEEECCSS-CCCCC---CCCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred CCCEEECCCC-CCCCc---ChhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence 7888877776 22222 37889999999999999999998888653
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=273.63 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=120.1
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCc-c---ccccCcceeeeecCCCCCC-CCCC-CCCCCeeE
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL-E---YLSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKL 405 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~---~~~~~l~~L~~~~~~~~~l-~~~~-~~~~L~~L 405 (737)
...++.+.++.+.+..+....|..+++|++|++++|...+.+ + ..+.+|+.|++.++.+..+ |..+ .+.+|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 356778888888888887788888888888888888555443 3 3345666777777766665 4444 67788888
Q ss_pred EccCCcccc-cccc--ccCCCCCcEEecCCCcCCCCCC--CCCCCCCCcEEeccCccccccccccccCc--cccceeccc
Q 004686 406 NLCNSRIKY-LWKG--IKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTL--KRLILLNLK 478 (737)
Q Consensus 406 ~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~ 478 (737)
++++|.+.. ++.. +.++++|++|++++|.+....+ .+.++++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 888888875 4443 7788888888888887776644 37788888888888887766656666555 566666666
Q ss_pred cccccccCccccCCCCC------ccEEEccCCCC
Q 004686 479 DCRNLVSFPKNVCLMKS------LKILCLCGCLK 506 (737)
Q Consensus 479 ~n~~~~~~~~~~~~l~~------L~~L~l~~~~~ 506 (737)
.|.+.+..|..+..+.+ |+.|++++|.+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 66655555544444433 55666655543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1e-26 Score=251.75 Aligned_cols=342 Identities=19% Similarity=0.211 Sum_probs=234.4
Q ss_pred eEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCcc
Q 004686 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRI 412 (737)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i 412 (737)
.++.+.+..+....++ .+..+++|++|++++|.+.+..+ ..+.+|++|++.++.+..++....+++|++|++++|.+
T Consensus 47 ~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 124 (466)
T ss_dssp TCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred cccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCC
Confidence 5667777776665554 47788888888888888877554 33457777777777777777645778888888888888
Q ss_pred ccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCC
Q 004686 413 KYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (737)
Q Consensus 413 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (737)
..++. +..+++|++|++++|.+.. .+.+..+++|++|++++ .... .+ .+..+++|++|++++|.+. .++ .+..
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~-~~~-~l~~ 197 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVS-DIS-VLAK 197 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGGG
T ss_pred CCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCC-CCh-hhcc
Confidence 88765 7888888888888887654 34577788888888864 3322 22 3778888888888887643 333 3677
Q ss_pred CCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCC
Q 004686 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNK 572 (737)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 572 (737)
+++|++|++++|.+.+..+ ++.+++|++|++++|.++.++ .+..+++|+.|++++|.......+......+......
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence 8888888888887765444 667788888888888887764 4677888888888887732221111111111122222
Q ss_pred CCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCC
Q 004686 573 NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSL 652 (737)
Q Consensus 573 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~ 652 (737)
+.... .+.+..+++|+.|++++|.+ ++ ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+... +
T Consensus 275 n~l~~---~~~~~~l~~L~~L~L~~n~l-~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~ 346 (466)
T 1o6v_A 275 NQISN---ISPLAGLTALTNLELNENQL-ED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD-V 346 (466)
T ss_dssp SCCCC---CGGGTTCTTCSEEECCSSCC-SC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred CccCc---cccccCCCccCeEEcCCCcc-cC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC-c
Confidence 22222 12266777888888888774 32 332 6677888888888887776654 6778888888888876433 2
Q ss_pred CCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 653 PELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 653 ~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
+ .+.+|++|+.+++..| .+.+..| +..+++|+.|++++|.++.
T Consensus 347 ~---------~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 S---------SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G---------GGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred h---------hhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccC
Confidence 2 3467788888888776 4555555 7889999999998887654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1e-26 Score=265.12 Aligned_cols=114 Identities=27% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch---------hhhcCCCCCEEccccCccCCCCCC
Q 004686 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS---------SINQLLKLKILCLEKCRNLKSLPE 654 (737)
Q Consensus 584 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~---------~l~~l~~L~~L~l~~n~~~~~~~~ 654 (737)
+.++++|+.|++++|. +++..+..+..+++|+.|++++|.++.++. .+..+++|++|+|++|... .+|.
T Consensus 476 ~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 4555666666666665 333334445556666666666665554321 2455566666666666533 2221
Q ss_pred CCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 655 LPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 655 l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
- .+.+|++|+.+++..| .+....+..+.++++|+.|++++|.++.
T Consensus 554 ~-------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 554 E-------VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp T-------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred H-------HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 0 1233445555555444 2222223334455555555555555443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.4e-26 Score=239.22 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=247.9
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR 411 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 411 (737)
..++.+.+.++.+..+. .+..+++|++|++++|.+++..+ ..+.+++.|++.++.+..++....+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCc
Confidence 46788888888777665 48899999999999999987553 4457889999999999888866688999999999999
Q ss_pred cccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccC
Q 004686 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 491 (737)
Q Consensus 412 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 491 (737)
+..++. +..+++|+.|++++|......+.+..+++|++|++++|......+ +..+++|++|++++|.+. .++. +.
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~ 196 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LA 196 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GG
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-cc
Confidence 998877 889999999999999888777779999999999999987654433 889999999999998754 4444 88
Q ss_pred CCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCC
Q 004686 492 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (737)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (737)
.+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|....
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~---------------- 257 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD---------------- 257 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC----------------
T ss_pred CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC----------------
Confidence 89999999999998776443 7889999999999999998877 8899999999999986221
Q ss_pred CCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEccccCccCC
Q 004686 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
++.+..+++|++|++++|.+.. + ..+..+++|+.|++++|.++ ..|..+..+++|++|++++|+...
T Consensus 258 ---------~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 258 ---------INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ---------CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred ---------ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 1336678999999999998543 4 45788999999999999998 455678999999999999998544
Q ss_pred CCCCCCCccceeeccccccccccccccc
Q 004686 651 SLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 651 ~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
..| +..+++|+.+++.+|
T Consensus 326 ~~~----------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 326 IRP----------LASLSKMDSADFANQ 343 (347)
T ss_dssp CGG----------GGGCTTCSEESSSCC
T ss_pred ccC----------hhhhhccceeehhhh
Confidence 322 466777777777766
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=272.46 Aligned_cols=373 Identities=17% Similarity=0.132 Sum_probs=211.4
Q ss_pred ccCCceEEEEEecCC-cccccChhhhhcCCCCceEEEcccccCCCcccccc---CcceeeeecCCCCC-CCCC---CCCC
Q 004686 329 YMGTDAVEAIIVDVP-EMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNS-LPVS---FRPE 400 (737)
Q Consensus 329 ~~~~~~~~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~~~~~~~~-l~~~---~~~~ 400 (737)
+.....++.+.+..+ ....+...+|.++++|++|++++|.+.+..|..+. +|+.|++.++.+.. ++.. ..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 455667888888877 44556677888899999999999888876665544 55566666665554 2332 2678
Q ss_pred CCeeEEccCCcccccc--ccccCCCCCcEEecCCCcCCCCCCC-CCCC--CCCcEEeccCccccccccccccCccc----
Q 004686 401 KLFKLNLCNSRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPD-FTGV--PNLERLNLEGCTRLLEVHQSVGTLKR---- 471 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~---- 471 (737)
+|++|++++|.+..++ ..+.++++|++|++++|.+....+. +..+ ++|+.|++++|.+.+..|..+..+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 8999999998888663 4588889999999988877655442 4333 56666666666655555544444443
Q ss_pred --cceeccccccccccCccccC------------------------------------C--CCCccEEEccCCCCCcccC
Q 004686 472 --LILLNLKDCRNLVSFPKNVC------------------------------------L--MKSLKILCLCGCLKLEKLP 511 (737)
Q Consensus 472 --L~~L~l~~n~~~~~~~~~~~------------------------------------~--l~~L~~L~l~~~~~~~~~~ 511 (737)
|+.|++++|.+.+..+..+. . .++|+.|++++|.+.+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 66666665543332221111 0 1455666666655555555
Q ss_pred cccCCCCcccEEEccCccCccc-CcccccCCCCcEEEccCCCC--CCCcCccchhhhcccCCCCCCCCccccCCCCCCCC
Q 004686 512 QDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKG--QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLS 588 (737)
Q Consensus 512 ~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (737)
..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.. ..+..+......+......+.... .....+.+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~ 362 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLE 362 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCC
Confidence 5555666666666666665543 33455556666666665551 112222211111112222222111 1112245556
Q ss_pred CCcEEeccCCCCCCC-----------------CccccccCCCCCCeEeCCCCCCcccch--hhhcCCCCCEEccccCccC
Q 004686 589 SLQTLDLSDCNLLEG-----------------AIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 589 ~L~~L~l~~~~~~~~-----------------~~~~~l~~~~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~ 649 (737)
+|++|++++|.+..- .+|.. ..+++.|++++|.++.++. .+..+++|+.|++++|...
T Consensus 363 ~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 666666666553210 12211 2344455555555543332 3457777888888877755
Q ss_pred CCCC----CCCCccceeecc------------------cccccccccccccccCCCCceEEEecCCCccccccccchHH
Q 004686 650 KSLP----ELPPEIVFVGAE------------------DCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (737)
Q Consensus 650 ~~~~----~l~~~L~~l~l~------------------~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 706 (737)
...+ .-.++|+.|+++ ++++|+.|++++| .+.+..+..+.++++|+.|++++|.++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCC
Confidence 3221 112455555443 3567777777766 444555556677777777777777665
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=259.09 Aligned_cols=356 Identities=15% Similarity=0.100 Sum_probs=251.5
Q ss_pred EEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCC-CCCC-CCCCCeeEEccCC
Q 004686 336 EAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNLCNS 410 (737)
Q Consensus 336 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l-~~~~-~~~~L~~L~l~~~ 410 (737)
+.+.+..+.+..++.... ++|++|++++|.+.+..+.. +.+|+.|++.++.+..+ |..+ .+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 457777777776664333 89999999999998876643 45677777777777766 3344 6789999999999
Q ss_pred ccccccccccCCCCCcEEecCCCcCCCC-CC-CCCCCCCCcEEeccCccccccccccccCcccc--ceeccccccc--cc
Q 004686 411 RIKYLWKGIKPLKELKFMNLSHSCNLIR-TP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL--ILLNLKDCRN--LV 484 (737)
Q Consensus 411 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~ 484 (737)
.++.+|.. .+++|++|++++|.+... .| .+..+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 99988877 789999999999988763 33 58889999999999987654 356677777 9999999877 55
Q ss_pred cCccccCC--------------------------CCCccEEEccCCC-------CCcccCcccCCCC-------------
Q 004686 485 SFPKNVCL--------------------------MKSLKILCLCGCL-------KLEKLPQDLGEVE------------- 518 (737)
Q Consensus 485 ~~~~~~~~--------------------------l~~L~~L~l~~~~-------~~~~~~~~l~~l~------------- 518 (737)
..|..+.. +++|+.|++++|. +.+.++ .++.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 55555544 5556666666654 222222 233333
Q ss_pred --------------cccEEEccCccCc-ccCccc-----ccCCCCcEEEccCCCCCCCcC-ccc----hhhhcccCCCCC
Q 004686 519 --------------CLEELDVGGTAIR-QIPPSI-----VQLVNLKIFSLHGCKGQPPKI-LSS----NFFLSLLLPNKN 573 (737)
Q Consensus 519 --------------~L~~L~l~~~~~~-~l~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~----~~~~~~~~~~~~ 573 (737)
+|++|++++|.++ .+|..+ ..+++|+.+++++|....|.. +.. ..+..+.. ..+
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l-~~n 312 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV-SGT 312 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE-ESS
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc-CCC
Confidence 4555555555555 566555 566666666666665433310 000 00111111 111
Q ss_pred CCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcc---cchhhhcCCCCCEEccccCccCC
Q 004686 574 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS---LPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 574 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
... .......+++|++|++++|. +++.+|..+..+++|+.|++++|.++. +|..+..+++|++|++++|....
T Consensus 313 ~l~---~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 313 RMV---HMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCC---CCCCCSSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ccc---cccchhhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 111 11223688999999999999 667788889999999999999999985 45678999999999999999876
Q ss_pred CCCC----CCCccceeecccc-----------cccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 651 SLPE----LPPEIVFVGAEDC-----------TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 651 ~~~~----l~~~L~~l~l~~c-----------~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
.+|. ..+.|+.|+++++ ++|+.|++..| .+. .+|..+..+++|++|++++|.++.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 5552 2378999999876 68999998887 333 667667799999999999998873
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=248.46 Aligned_cols=293 Identities=20% Similarity=0.231 Sum_probs=248.2
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCCC--CCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~l 407 (737)
..++.+.+..+.+..+....|..+++|++|++++|.+++..+.. +.+|++|++.++.+..++... .+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46788999999999998899999999999999999988765544 457888888888888888653 6789999999
Q ss_pred cCCcccccc-ccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceecccccccccc
Q 004686 408 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (737)
Q Consensus 408 ~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (737)
++|.+..++ ..+..+++|+.|++++|.+....+ .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999774 568999999999999998877665 488899999999999887665556789999999999999988777
Q ss_pred CccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-ccccCCCCcEEEccCCCCCCCcCccchhh
Q 004686 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (737)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (737)
.+..+..+++|+.|++++|...+.++.......+|++|++++|.++.+|. .+..+++|+.|++++|....
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------- 262 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--------- 262 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE---------
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc---------
Confidence 77788999999999999999888888777777799999999999998884 57889999999999886211
Q ss_pred hcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEcc
Q 004686 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 643 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l 643 (737)
.....+.++++|++|++++|. +++..|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|
T Consensus 263 --------------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 263 --------------IEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp --------------ECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred --------------cChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 112346788999999999999 566668889999999999999999997776 4688999999999
Q ss_pred ccCccC
Q 004686 644 EKCRNL 649 (737)
Q Consensus 644 ~~n~~~ 649 (737)
++|+..
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 999864
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.3e-26 Score=251.00 Aligned_cols=322 Identities=20% Similarity=0.163 Sum_probs=233.6
Q ss_pred cccCcceeeeecCCCCCC-CCCC-CCCCCeeEEccCCccc-cc-cccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcE
Q 004686 376 LSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNLCNSRIK-YL-WKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLER 450 (737)
Q Consensus 376 ~~~~l~~L~~~~~~~~~l-~~~~-~~~~L~~L~l~~~~i~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 450 (737)
...++++|++.++.+..+ +..+ .+++|++|++++|.+. .+ +..|..+++|++|++++|.+....+ .+..+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 334555666665555554 2222 5678999999999886 55 4558889999999999998877655 4888999999
Q ss_pred EeccCcccccccccc--ccCccccceeccccccccccCccc-cCCCCCccEEEccCCCCCcccCcccCCC--CcccEEEc
Q 004686 451 LNLEGCTRLLEVHQS--VGTLKRLILLNLKDCRNLVSFPKN-VCLMKSLKILCLCGCLKLEKLPQDLGEV--ECLEELDV 525 (737)
Q Consensus 451 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l 525 (737)
|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999998877655543 888999999999998877766665 7889999999999999888777777765 68999999
Q ss_pred cCccCcccCcc---------cccCCCCcEEEccCCCCCC--CcCccc----hhhhcccCCCCCCCCcc--------ccCC
Q 004686 526 GGTAIRQIPPS---------IVQLVNLKIFSLHGCKGQP--PKILSS----NFFLSLLLPNKNSDSMC--------LSFP 582 (737)
Q Consensus 526 ~~~~~~~l~~~---------~~~l~~L~~L~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~ 582 (737)
++|.+..++.. +..+++|+.|++++|.... +..+.. ..+..+....+...... ....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 99988866542 3356789999999986321 110000 11111111111000000 0000
Q ss_pred CCC--CCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCCCCCEEccccCccCCCCCCCCCcc
Q 004686 583 RFT--GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPELPPEI 659 (737)
Q Consensus 583 ~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L 659 (737)
.+. .+++|+.|++++|. +++..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|...+..+.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----- 341 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR----- 341 (455)
T ss_dssp TTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----
T ss_pred ccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-----
Confidence 111 24689999999999 6667788899999999999999999965 55889999999999999986544332
Q ss_pred ceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 660 VFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 660 ~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
.+.++++|+.|++..| .+....+..+.++++|++|++++|.++.
T Consensus 342 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 342 ---MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ---GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCcccc
Confidence 3567888888888877 4555556678899999999999998864
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=253.97 Aligned_cols=177 Identities=22% Similarity=0.183 Sum_probs=117.0
Q ss_pred CCCccEEEccCCCCCccc--CcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC-CCCCc--Cccchhhhcc
Q 004686 493 MKSLKILCLCGCLKLEKL--PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPK--ILSSNFFLSL 567 (737)
Q Consensus 493 l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~--~~~~~~~~~~ 567 (737)
+++|++|++++|.+.+.. +..+..+++|++|++++|.++.++..+..+++|+.|++++|. ...+. .+......+.
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 444555555554443322 344555666666666666666666556677777777777766 11111 1111111122
Q ss_pred cCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCCCCCEEccccC
Q 004686 568 LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKC 646 (737)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n 646 (737)
.....+.... .....+.++++|++|++++|.+..+.+|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|
T Consensus 426 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 2222222222 12234788999999999999965467899999999999999999999965 778999999999999999
Q ss_pred ccCCCCCCCCCccceeeccccccccccccccc
Q 004686 647 RNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 647 ~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
......+. .+.+|++|+.+++.+|
T Consensus 505 ~l~~~~~~--------~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 505 QLKSVPDG--------IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCSCCCTT--------TTTTCTTCCEEECCSS
T ss_pred cCCCCCHH--------HhhcccCCcEEEecCC
Confidence 86554332 3467888888888877
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.8e-25 Score=240.51 Aligned_cols=326 Identities=19% Similarity=0.201 Sum_probs=248.6
Q ss_pred hcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCC
Q 004686 354 STMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSH 432 (737)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~ 432 (737)
..+++++.|+++++.+..... ..+.++++|++.++.+..++....+++|++|++++|.+..++. +..+++|++|++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 356789999999988876322 4567899999999999988875578999999999999998887 99999999999999
Q ss_pred CcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCc
Q 004686 433 SCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ 512 (737)
Q Consensus 433 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 512 (737)
|.+....+ +..+++|++|++++|.+.. ++ .+..+++|++|++++ ... .++. +..+++|+.|++++|.+.+ + .
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~-~~~~-~~~l~~L~~L~l~~n~l~~-~-~ 193 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVT-DLKP-LANLTTLERLDISSNKVSD-I-S 193 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCC-CCGG-GTTCTTCCEEECCSSCCCC-C-G
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-ccc-Cchh-hccCCCCCEEECcCCcCCC-C-h
Confidence 97776544 8899999999999987654 33 588999999999974 333 3333 8899999999999998765 3 3
Q ss_pred ccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcE
Q 004686 513 DLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQT 592 (737)
Q Consensus 513 ~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (737)
.+..+++|++|++++|.++.++. ++.+++|+.|++++|.......+......+......+.... .+.+..+++|++
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---~~~~~~l~~L~~ 269 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTE 269 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---CGGGTTCTTCSE
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc---chhhhcCCCCCE
Confidence 48889999999999999997765 77899999999999983332222222222222223333222 223678889999
Q ss_pred EeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeeccccccccc
Q 004686 593 LDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLET 672 (737)
Q Consensus 593 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~ 672 (737)
|++++|.+.. ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|......| +..|++|+.
T Consensus 270 L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~ 335 (466)
T 1o6v_A 270 LKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP----------VSSLTKLQR 335 (466)
T ss_dssp EECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG----------GGGCTTCCE
T ss_pred EECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh----------hccCccCCE
Confidence 9999988433 333 7788999999999998887774 7889999999999997544321 356777777
Q ss_pred ccccccccCCCCceEEEecCCCccccccccchHHHHH
Q 004686 673 ISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTL 709 (737)
Q Consensus 673 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 709 (737)
|++.+| .+.+. ..+.+|++|+.|++++|.++...
T Consensus 336 L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 336 LFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp EECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred eECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 777766 33332 35789999999999999886554
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=8.1e-25 Score=234.39 Aligned_cols=325 Identities=17% Similarity=0.144 Sum_probs=212.8
Q ss_pred eEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccc
Q 004686 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 413 (737)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 413 (737)
.++.+.+..+.+..++. -.++|++|++++|.+++ +|..+.+++.|++.++.+..++.. +++|++|++++|.++
T Consensus 72 ~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS
T ss_pred CCCEEEecCCccccCCC----CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC
Confidence 45677887776666544 24789999999999887 666778899999999888877753 368999999999999
Q ss_pred cccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCC
Q 004686 414 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 493 (737)
Q Consensus 414 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 493 (737)
.+| .+..+++|++|++++|.+...+.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. .
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 988 589999999999999987754322 3589999999987655 55 68899999999999987654 5542 3
Q ss_pred CCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC-CCCCcCccchhhhcccCCCC
Q 004686 494 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNK 572 (737)
Q Consensus 494 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~ 572 (737)
++|++|++++|.+. .+|. ++.+++|++|++++|.++.+|.. +++|+.|++++|. ..+|... ..+. ......
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~--~~L~-~L~ls~ 286 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP--QSLT-FLDVSE 286 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCC--TTCC-EEECCS
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCccc--CcCC-EEECcC
Confidence 58999999998776 6674 88899999999999999888763 4789999999887 3333221 1111 122222
Q ss_pred CCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCC
Q 004686 573 NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSL 652 (737)
Q Consensus 573 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~ 652 (737)
+.... ++. -.++|+.|++++|.+.. ++. ..++|+.|++++|.++.+|.. +++|++|++++|... .+
T Consensus 287 N~l~~---l~~--~~~~L~~L~l~~N~l~~--i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 287 NIFSG---LSE--LPPNLYYLNASSNEIRS--LCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp SCCSE---ESC--CCTTCCEEECCSSCCSE--ECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CC
T ss_pred CccCc---ccC--cCCcCCEEECcCCcCCc--ccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cc
Confidence 22222 111 12578888888887432 221 124788888888888877743 578888888888644 45
Q ss_pred CCCCCccceeecccccccccccccccccCCCCceEEEec-------------CCCccccccccchHHH
Q 004686 653 PELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLN-------------CFKLVEDQVSKDNLAV 707 (737)
Q Consensus 653 ~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~-------------~~~L~~L~l~~n~~~~ 707 (737)
|..+++|+.|+++++.- +.++ .+|..+.+ +++|+.|++++|.+++
T Consensus 353 p~~l~~L~~L~L~~N~l-~~l~---------~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 353 PELPQNLKQLHVEYNPL-REFP---------DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCCCTTCCEEECCSSCC-SSCC---------CCCTTCCEEECCC------------------------
T ss_pred cchhhhccEEECCCCCC-CcCC---------CChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 55445555555554321 1110 12222222 3889999999998876
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.1e-25 Score=249.87 Aligned_cols=357 Identities=13% Similarity=0.060 Sum_probs=209.2
Q ss_pred EEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCC-CCC-CCCCCeeEEccCC
Q 004686 336 EAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLP-VSF-RPEKLFKLNLCNS 410 (737)
Q Consensus 336 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~-~~~-~~~~L~~L~l~~~ 410 (737)
+.+.+..+.+..++.... ++|++|++++|.+++..+.. +.+|+.|++.++.+..++ ..+ .+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 566777666666554332 67777888877777665533 345666666666666653 333 5677777777777
Q ss_pred ccccccccccCCCCCcEEecCCCcCCCCC--CCCCCCCCCcEEeccCccccccccccccCcccc--ceeccccccc--cc
Q 004686 411 RIKYLWKGIKPLKELKFMNLSHSCNLIRT--PDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL--ILLNLKDCRN--LV 484 (737)
Q Consensus 411 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~ 484 (737)
.++.+|.. .+++|++|++++|.+.... ..+..+++|++|++++|.+... .+..+++| ++|++++|.+ .+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 77777765 6777777777777766543 2467777777777777665432 34444444 7777777766 44
Q ss_pred cCccccCC--------------------------CCCccEEEccCCCCC----cccCcccCCC-----------------
Q 004686 485 SFPKNVCL--------------------------MKSLKILCLCGCLKL----EKLPQDLGEV----------------- 517 (737)
Q Consensus 485 ~~~~~~~~--------------------------l~~L~~L~l~~~~~~----~~~~~~l~~l----------------- 517 (737)
..|..+.. +++|+.|++++|... ......+..+
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 44444433 223334444333100 0000001111
Q ss_pred ----------CcccEEEccCccCc-ccCccc-----ccCCCCcEEEccCCCCCCCcCccc-----hhhhcccCCCCCCCC
Q 004686 518 ----------ECLEELDVGGTAIR-QIPPSI-----VQLVNLKIFSLHGCKGQPPKILSS-----NFFLSLLLPNKNSDS 576 (737)
Q Consensus 518 ----------~~L~~L~l~~~~~~-~l~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 576 (737)
++|++|++++|.++ .+|..+ ..++.|+.+++..+....|..... ..+..+. ...+..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~-l~~n~~- 343 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS-ISDTPF- 343 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE-EESSCC-
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE-ccCCCc-
Confidence 13444444444443 333333 222222222222222111100000 0000010 011111
Q ss_pred ccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccc---hhhhcCCCCCEEccccCccCCCCC
Q 004686 577 MCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP---SSINQLLKLKILCLEKCRNLKSLP 653 (737)
Q Consensus 577 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp---~~l~~l~~L~~L~l~~n~~~~~~~ 653 (737)
........+++|++|++++|. +++.+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.....+|
T Consensus 344 --~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 344 --IHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp --CCCCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred --ccccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 111112678889999999988 56677788888899999999999888554 457888999999999988766455
Q ss_pred C----CCCccceeecccc-----------cccccccccccccCCCCceEEEecCCCccccccccchHHH
Q 004686 654 E----LPPEIVFVGAEDC-----------TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (737)
Q Consensus 654 ~----l~~~L~~l~l~~c-----------~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 707 (737)
. ..+.|+.|+++++ ++|+.|++..| .+. .+|..+.++++|++|++++|.++.
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM-SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence 3 1267888887765 57888888877 333 566666699999999999998873
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.2e-25 Score=229.88 Aligned_cols=295 Identities=17% Similarity=0.149 Sum_probs=216.6
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccC
Q 004686 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEG 455 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 455 (737)
++++.+++.++.+..+|..++ +++++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 456677777777777777654 588999999999988876 58889999999999998877755 488889999999998
Q ss_pred ccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCc--ccCcccCCCCcccEEEccCccCccc
Q 004686 456 CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGTAIRQI 533 (737)
Q Consensus 456 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~l 533 (737)
|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 7754 5554443 789999999988776666678889999999999988753 5567788899999999999999988
Q ss_pred CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCC
Q 004686 534 PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLF 613 (737)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 613 (737)
|..+. ++|+.|++++|.... .....+.++++|++|++++|. +++..+..+..++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 240 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITK-----------------------VDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTP 240 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCE-----------------------ECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGST
T ss_pred Ccccc--ccCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCc-CceeChhhccCCC
Confidence 87654 789999998876211 111236678899999999998 4445555788889
Q ss_pred CCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCC-CCceEEEecC
Q 004686 614 SLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRS-PNIALNFLNC 692 (737)
Q Consensus 614 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~-~~~~~~~~~~ 692 (737)
+|++|++++|.++.+|.++..+++|++|++++|+.....+....... .....+.|+.+++.+|.... ...+..+..+
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~--~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG--YNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS--CCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcc--cccccccccceEeecCcccccccCccccccc
Confidence 99999999999999998899999999999999985543221110000 01123556666666653322 2234577888
Q ss_pred CCccccccccch
Q 004686 693 FKLVEDQVSKDN 704 (737)
Q Consensus 693 ~~L~~L~l~~n~ 704 (737)
++|+.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 999999998874
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7e-26 Score=256.58 Aligned_cols=377 Identities=20% Similarity=0.170 Sum_probs=253.7
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCC-C-CCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l 407 (737)
..++.+.++.|.+..+...+|.++++|++|++++|.+++..+.. +.+|++|++.++.+..+|.. + .+.+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46789999999999999999999999999999999988765544 45778888888888888754 3 6889999999
Q ss_pred cCCcccccccc-ccCCCCCcEEecCCCcCCCCC-C-CCCCCCCCcEEeccCccccccccccccCccccc-----------
Q 004686 408 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRT-P-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI----------- 473 (737)
Q Consensus 408 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----------- 473 (737)
++|.++.++.. |..+++|++|++++|.+.... + .+..+++|++|++++|.+.+..+..+..+.+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999998764 899999999999999876543 3 367889999999999876554443333222211
Q ss_pred ----------------eeccccccccc-----------------------------------------------------
Q 004686 474 ----------------LLNLKDCRNLV----------------------------------------------------- 484 (737)
Q Consensus 474 ----------------~L~l~~n~~~~----------------------------------------------------- 484 (737)
.+++.+|....
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 11111110000
Q ss_pred -----cC----------------------ccccCCCCCccEEEccCCCCCccc-------------------CcccCCCC
Q 004686 485 -----SF----------------------PKNVCLMKSLKILCLCGCLKLEKL-------------------PQDLGEVE 518 (737)
Q Consensus 485 -----~~----------------------~~~~~~l~~L~~L~l~~~~~~~~~-------------------~~~l~~l~ 518 (737)
.. ...+....+|+.|++.+|.+.... +.....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00 001122344555555555432211 11123467
Q ss_pred cccEEEccCccCc---ccCcccccCCCCcEEEccCCCC-CCCcCc-----------------------cchhhhcc--cC
Q 004686 519 CLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKG-QPPKIL-----------------------SSNFFLSL--LL 569 (737)
Q Consensus 519 ~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~-~~~~~~-----------------------~~~~~~~~--~~ 569 (737)
+|+.|++++|.+. ..+.....+.+|+++++..+.. ..+..+ .......+ ..
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 7888888887765 2344444556666666655541 000000 00011111 11
Q ss_pred CCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCCCCCEEccccCcc
Q 004686 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRN 648 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~ 648 (737)
...+.... .....+..+++|+.|++++|....+..|..+..+++|++|+|++|.++.+ |..+.++++|++|+|++|++
T Consensus 452 ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 452 ISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp CTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccc-ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 11111111 11233667889999999999866666788899999999999999999965 56789999999999999985
Q ss_pred CCCCCCCCCccceeecccccccccccccccccCCCCceEEEecC-CCccccccccchHHHHHHHHHHHHhhh
Q 004686 649 LKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNC-FKLVEDQVSKDNLAVTLMKQWLLVYCK 719 (737)
Q Consensus 649 ~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~c~ 719 (737)
....+. .+.++++|+.|+++.| .+.+..+..+.++ ++|+.|++++|.+++++-..|+..+-+
T Consensus 531 ~~l~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 531 FSLDTF--------PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp CBCCCG--------GGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CCCChh--------HHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 443332 3577899999999888 6777778888888 689999999999998877666655443
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.3e-25 Score=229.94 Aligned_cols=294 Identities=17% Similarity=0.147 Sum_probs=216.5
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccC
Q 004686 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEG 455 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 455 (737)
+.++.+++.++.++.+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+....+ .+..+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 356677777777777777653 689999999999988754 68889999999999998877655 488899999999999
Q ss_pred ccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCc--ccCcccCCCCcccEEEccCccCccc
Q 004686 456 CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGTAIRQI 533 (737)
Q Consensus 456 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~l 533 (737)
|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.++.+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 8754 5554444 789999999987765555568889999999999988753 556677777 899999999999988
Q ss_pred CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCC
Q 004686 534 PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLF 613 (737)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 613 (737)
|..+. ++|+.|++++|.... .....+.++++|+.|++++|. +++..+..+..++
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~-----------------------~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQA-----------------------IELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLP 241 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCC-----------------------CCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCT
T ss_pred Ccccc--CCCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCC
Confidence 87654 789999998876221 112346788999999999998 5555666788999
Q ss_pred CCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCC-CCceEEEecC
Q 004686 614 SLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRS-PNIALNFLNC 692 (737)
Q Consensus 614 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~-~~~~~~~~~~ 692 (737)
+|+.|++++|.++.+|..+..+++|++|++++|+.....+....... .....++|+.+++.+|.... ...+..+..+
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG--FGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS--CCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccc--cccccccccceEeecCcccccccCccccccc
Confidence 99999999999999999999999999999999986543221100000 00113455566665553221 2335578889
Q ss_pred CCccccccccch
Q 004686 693 FKLVEDQVSKDN 704 (737)
Q Consensus 693 ~~L~~L~l~~n~ 704 (737)
++|+.+++++|.
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999998874
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.4e-25 Score=249.00 Aligned_cols=188 Identities=17% Similarity=0.160 Sum_probs=150.5
Q ss_pred CCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCC-CC-CCCCCeeEEccCCcccccc
Q 004686 342 VPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLW 416 (737)
Q Consensus 342 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~l~~~~i~~l~ 416 (737)
.+.+..++... .++|++|++++|.+++..+.. +.++++|++.++.+..++. .+ .+++|++|++++|.+..++
T Consensus 14 ~~~l~~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCSSCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCccccccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 33444444422 268999999999988765543 4567788888887777764 33 6789999999999999887
Q ss_pred cc-ccCCCCCcEEecCCCcCCCC--CCCCCCCCCCcEEeccCcccccccc-ccccCccccceeccccccccccCccccCC
Q 004686 417 KG-IKPLKELKFMNLSHSCNLIR--TPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (737)
Q Consensus 417 ~~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (737)
.. +..+++|++|++++|.+... ++.+..+++|++|++++|...+.+| ..+..+++|++|++++|.+.+..|..+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 65 89999999999999988753 3458899999999999988666665 67899999999999999988888999999
Q ss_pred CCCccEEEccCCCCCcccCcc-cCCCCcccEEEccCccCccc
Q 004686 493 MKSLKILCLCGCLKLEKLPQD-LGEVECLEELDVGGTAIRQI 533 (737)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~l 533 (737)
+++|+.|++++|.... ++.. ++.+++|++|++++|.++.+
T Consensus 171 l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 171 IRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccCceEecccCcccc-cchhhHhhcccccEEEccCCccccc
Confidence 9999999999987643 3333 45689999999999988754
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.2e-25 Score=238.84 Aligned_cols=336 Identities=18% Similarity=0.150 Sum_probs=212.0
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccC----------------cceeeeecCCCCCCCC
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNN----------------LRYLKWHEYPFNSLPV 395 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------l~~L~~~~~~~~~l~~ 395 (737)
...++.+.+.++....+ +..++.+++|++|++++|.+.+..|..+.+ ++.|++.++.+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 35667788888777444 456889999999999998888777766554 3667788888777776
Q ss_pred CCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCcccccee
Q 004686 396 SFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILL 475 (737)
Q Consensus 396 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 475 (737)
. +++|++|++++|.++.+|.. +++|++|++++|.+..... + .++|++|++++|.+.+ +| .+..+++|++|
T Consensus 89 ~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 89 L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred C--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 3 46889999999988888754 3788888888887664322 1 2678888888877654 66 58888888888
Q ss_pred ccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC-CC
Q 004686 476 NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQ 554 (737)
Q Consensus 476 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~ 554 (737)
++++|.+.+ +|.. +.+|++|++++|.+.+ +| .++.+++|++|++++|.++.+|.. .++|+.|++++|. ..
T Consensus 159 ~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 159 DVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEE 229 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSS
T ss_pred ECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCc
Confidence 888876553 5543 3578888888887765 55 578888888888888888877653 3578888888876 33
Q ss_pred CCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhc
Q 004686 555 PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 634 (737)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~ 634 (737)
+|. +......+......+.... ++. .+++|++|++++|.+.. +|.. +++|+.|++++|.++.+|..
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~---l~~--~~~~L~~L~l~~N~l~~--l~~~---~~~L~~L~ls~N~l~~l~~~--- 295 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT---LPD--LPPSLEALNVRDNYLTD--LPEL---PQSLTFLDVSENIFSGLSEL--- 295 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS---CCS--CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSEESCC---
T ss_pred ccc-cCCCCCCCEEECCCCcCCc---ccc--cccccCEEECCCCcccc--cCcc---cCcCCEEECcCCccCcccCc---
Confidence 332 2111111112222222221 121 24678888888887433 5543 36788888888877765521
Q ss_pred CCCCCEEccccCccCCCCCCCCCccceeeccc---------ccccccccccccccCCCCceEEEecCCCccccccccchH
Q 004686 635 LLKLKILCLEKCRNLKSLPELPPEIVFVGAED---------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 705 (737)
Q Consensus 635 l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~---------c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 705 (737)
.++|+.|++++|... .++.+|++|+.|++++ +++|+.+++..| .+. .+|. .+++|++|++++|.+
T Consensus 296 ~~~L~~L~l~~N~l~-~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 296 PPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CTTCCEEECCSSCCS-EECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCS-CCCC---CCTTCCEEECCSSCC
T ss_pred CCcCCEEECcCCcCC-cccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccc-cccc---hhhhccEEECCCCCC
Confidence 257777777777644 3555666777777754 356777777766 222 3444 578999999999988
Q ss_pred HH
Q 004686 706 AV 707 (737)
Q Consensus 706 ~~ 707 (737)
++
T Consensus 370 ~~ 371 (454)
T 1jl5_A 370 RE 371 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 76
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.9e-25 Score=236.29 Aligned_cols=336 Identities=16% Similarity=0.133 Sum_probs=236.5
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCcc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRI 412 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i 412 (737)
..++.+.+..+.+..++ .+..+++|++|++++|.+++.....+.++++|++.++.+..++ ...+++|++|++++|.+
T Consensus 42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcC
Confidence 46788889888777764 6899999999999999999865566778999999999888886 44788999999999999
Q ss_pred ccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCC
Q 004686 413 KYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (737)
Q Consensus 413 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (737)
+.++ +..+++|++|++++|.+... .+..+++|++|++++|...+.+ .+..+++|++|++++|.+.+ +| +..
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred Ceec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 9886 88999999999999988774 3788999999999999766665 47889999999999987655 55 788
Q ss_pred CCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhccc----
Q 004686 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLL---- 568 (737)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---- 568 (737)
+++|+.|++++|.+.+. .++.+++|+.|++++|.++.+| ++.+++|+.|++++|............+..+.
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 99999999999988764 3888999999999999999987 78899999999999882221111111111110
Q ss_pred -----CCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccc--------cccCCCCCCeEeCCCCCCcccchhhhcC
Q 004686 569 -----LPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS--------DIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (737)
Q Consensus 569 -----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~l~~~~~L~~L~l~~n~l~~lp~~l~~l 635 (737)
....+.... .++ .+++++|+.|++++|.. .+.+|. .+..+++|+.|++++|.++.++ +..+
T Consensus 265 ~L~~L~l~~n~~~~--~~~-~~~l~~L~~L~Ls~n~~-l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l 338 (457)
T 3bz5_A 265 DLLEIDLTHNTQLI--YFQ-AEGCRKIKELDVTHNTQ-LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHN 338 (457)
T ss_dssp CCSCCCCTTCTTCC--EEE-CTTCTTCCCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred CCCEEECCCCccCC--ccc-ccccccCCEEECCCCcc-cceeccCCCcceEechhhcccCCEEECCCCcccccc--cccC
Confidence 001111111 111 34556666666666652 222221 1344556666666666666553 5666
Q ss_pred CCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccchHHHHHHHHH
Q 004686 636 LKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQW 713 (737)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 713 (737)
++|+.|++++|+.. +++.|+.+++..| ... ....+..|..+++++|.+++..+..+
T Consensus 339 ~~L~~L~l~~N~l~----------------~l~~L~~L~l~~n-~l~-----g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQ----------------DFSSVGKIPALNN-NFE-----AEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TTCSEEECCSSCCC----------------BCTTGGGSSGGGT-SEE-----EEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcCcEEECCCCCCC----------------CccccccccccCC-cEE-----ecceeeecCccccccCcEEEEcChhH
Confidence 66666666666522 2344445544443 111 11466778888888888876554433
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.1e-25 Score=227.42 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=200.0
Q ss_pred CCCeeEEccCCccc---cccccccCCCCCcEEecCC-CcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccce
Q 004686 400 EKLFKLNLCNSRIK---YLWKGIKPLKELKFMNLSH-SCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL 474 (737)
Q Consensus 400 ~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 474 (737)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+....| .+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47888999998888 5788899999999999994 77775555 4888999999999998888888888999999999
Q ss_pred eccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCC-cccEEEccCccCc-ccCcccccCCCCcEEEccCCC
Q 004686 475 LNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE-CLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 475 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 552 (737)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.++ .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999988888888899999999999999998888888888887 8999999999988 7788888887 9999998876
Q ss_pred CCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchh
Q 004686 553 GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSS 631 (737)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~ 631 (737)
.... ....+..+++|+.|++++|. +++.++. +..+++|++|++++|.++ .+|..
T Consensus 209 l~~~-----------------------~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 209 LEGD-----------------------ASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEC-----------------------CGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred ccCc-----------------------CCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 2100 01236678899999999998 4444544 778899999999999998 78888
Q ss_pred hhcCCCCCEEccccCccCCCCCCCCCccceeeccccccccccccccc
Q 004686 632 INQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 632 l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
+..+++|++|++++|+..+.+|. ..++++|+.+++.+|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~---------~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQ---------GGNLQRFDVSAYANN 301 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCC---------STTGGGSCGGGTCSS
T ss_pred HhcCcCCCEEECcCCcccccCCC---------CccccccChHHhcCC
Confidence 99999999999999987777664 245666666666655
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.2e-24 Score=223.03 Aligned_cols=222 Identities=25% Similarity=0.330 Sum_probs=172.5
Q ss_pred CCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
.++++|++++|.++.+|..+..+++|++|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 467778888888888887777788888888888877744445777888888888887765 6777788888888888888
Q ss_pred ccccccCccccCC---------CCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccC
Q 004686 480 CRNLVSFPKNVCL---------MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHG 550 (737)
Q Consensus 480 n~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 550 (737)
|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 8777777766554 888888888888766 677778888888888888888888888888888888888888
Q ss_pred CCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccc
Q 004686 551 CKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLP 629 (737)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp 629 (737)
|..... ....+.++++|++|++++|. ..+.+|..+..+++|++|++++|++. .+|
T Consensus 239 n~~~~~-----------------------~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 239 CTALRN-----------------------YPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCB-----------------------CCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred Ccchhh-----------------------hHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 662110 01236677888888888887 55677877888888888888887665 788
Q ss_pred hhhhcCCCCCEEccccCc
Q 004686 630 SSINQLLKLKILCLEKCR 647 (737)
Q Consensus 630 ~~l~~l~~L~~L~l~~n~ 647 (737)
..+..+++|+.+++..+.
T Consensus 295 ~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGGGGSCTTCEEECCGGG
T ss_pred HHHhhccCceEEeCCHHH
Confidence 888888888888887654
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.3e-25 Score=225.17 Aligned_cols=251 Identities=15% Similarity=0.179 Sum_probs=179.5
Q ss_pred CCCceEEEcccccCC--CccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccC-Cccc-cccccccCCCCCcEEecCC
Q 004686 357 SNLRLLEINNLYSSG--NLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN-SRIK-YLWKGIKPLKELKFMNLSH 432 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~-~~i~-~l~~~~~~l~~L~~L~l~~ 432 (737)
.+++.|+++++.+.+ .+|..+.+ +++|++|++++ |.+. .+|..+..+++|++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-------------------l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~ 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-------------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-------------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhC-------------------CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC
Confidence 456666666666655 44433322 23556666663 5555 4566677777777777777
Q ss_pred CcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCC-CccEEEccCCCCCccc
Q 004686 433 SCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMK-SLKILCLCGCLKLEKL 510 (737)
Q Consensus 433 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~ 510 (737)
|.+....| .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 76664444 366777777777777776667777777777777777777777667777777776 7777777777777677
Q ss_pred CcccCCCCcccEEEccCccCc-ccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCC
Q 004686 511 PQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 589 (737)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (737)
|..+..++ |++|++++|.++ ..|..+..+++|+.|++++|.... ..+.+..+++
T Consensus 191 ~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~l~~ 245 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------------DLGKVGLSKN 245 (313)
T ss_dssp CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------------------------BGGGCCCCTT
T ss_pred ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------------------------ecCcccccCC
Confidence 77777776 788888777776 455566777788888887765211 1122556789
Q ss_pred CcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEccccCccCCCCC
Q 004686 590 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLP 653 (737)
Q Consensus 590 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~ 653 (737)
|++|++++|. +++.+|..+..+++|+.|++++|.++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 246 L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 246 LNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999999 66678999999999999999999998 67754 889999999999998665443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1e-23 Score=217.35 Aligned_cols=286 Identities=17% Similarity=0.159 Sum_probs=228.1
Q ss_pred CCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCC-C-CCCCCeeEEccCCccccc-cccccCCCCCcEEecCCC
Q 004686 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHS 433 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~ 433 (737)
+++++++++++.++.........++.|++.++.+..++.. + .+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4789999999888765555667899999999999988763 3 689999999999999988 677999999999999999
Q ss_pred cCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccc--cCccccCCCCCccEEEccCCCCCcccC
Q 004686 434 CNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV--SFPKNVCLMKSLKILCLCGCLKLEKLP 511 (737)
Q Consensus 434 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~ 511 (737)
.+...+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~ 187 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CC
Confidence 8876555443 789999999998877666778999999999999988743 566778999999999999988764 55
Q ss_pred cccCCCCcccEEEccCccCccc-CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCC
Q 004686 512 QDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (737)
Q Consensus 512 ~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (737)
..+. ++|++|++++|.++.+ |..+..+++|+.|++++|.... .....+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L 242 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------------------VDNGSLANTPHL 242 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------------------ECTTTGGGSTTC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------------------eChhhccCCCCC
Confidence 5443 8999999999999966 5678899999999999987211 111246778999
Q ss_pred cEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchh-hh------cCCCCCEEccccCccCCCCCCCCCccceee
Q 004686 591 QTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-IN------QLLKLKILCLEKCRNLKSLPELPPEIVFVG 663 (737)
Q Consensus 591 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~-l~------~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~ 663 (737)
++|++++|.+. .+|..+..+++|++|++++|.++.+|.. +. ..+.|+.|++++|+.... .+++. .
T Consensus 243 ~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~----~ 314 (330)
T 1xku_A 243 RELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPS----T 314 (330)
T ss_dssp CEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGG----G
T ss_pred CEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCcc----c
Confidence 99999999965 4888899999999999999999977653 32 348899999999986431 01111 3
Q ss_pred ccccccccccccccc
Q 004686 664 AEDCTSLETISAFAK 678 (737)
Q Consensus 664 l~~c~~L~~l~~~~~ 678 (737)
+.++++++.+++.+|
T Consensus 315 f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 315 FRCVYVRAAVQLGNY 329 (330)
T ss_dssp GTTCCCGGGEEC---
T ss_pred cccccceeEEEeccc
Confidence 466778888777655
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=6e-24 Score=219.26 Aligned_cols=283 Identities=18% Similarity=0.175 Sum_probs=225.7
Q ss_pred CCCceEEEcccccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCCeeEEccCCccccc-cccccCCCCCcEEecCCC
Q 004686 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHS 433 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~ 433 (737)
+++++++++++.+.........+++.|++.++.+..++. .+ .+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 478999999998886655666789999999999888864 33 788999999999999987 677999999999999999
Q ss_pred cCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecccccccc--ccCccccCCCCCccEEEccCCCCCcccC
Q 004686 434 CNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL--VSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (737)
Q Consensus 434 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 511 (737)
.+...++.+. ++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+..+ +|++|++++|.+.+ +|
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC
Confidence 8886655543 89999999999877665567899999999999999874 3566677777 99999999998765 66
Q ss_pred cccCCCCcccEEEccCccCcccC-cccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCC
Q 004686 512 QDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (737)
Q Consensus 512 ~~l~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (737)
..+. ++|++|++++|.++.++ ..+..+++|+.|++++|..... ....+..+++|
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L 243 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----------------------ENGSLSFLPTL 243 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----------------------CTTGGGGCTTC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----------------------ChhHhhCCCCC
Confidence 5443 79999999999999776 5788999999999999872211 11236678999
Q ss_pred cEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhc------CCCCCEEccccCccC--CCCCCCCCccce
Q 004686 591 QTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQ------LLKLKILCLEKCRNL--KSLPELPPEIVF 661 (737)
Q Consensus 591 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~------l~~L~~L~l~~n~~~--~~~~~l~~~L~~ 661 (737)
++|++++|.+. .+|..+..+++|+.|++++|.++.++. .+.. .++|+.|++++|+.. ...|.
T Consensus 244 ~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------- 314 (332)
T 2ft3_A 244 RELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------- 314 (332)
T ss_dssp CEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-------
T ss_pred CEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc-------
Confidence 99999999965 488889999999999999999997764 2332 478999999999865 22221
Q ss_pred eeccccccccccccccc
Q 004686 662 VGAEDCTSLETISAFAK 678 (737)
Q Consensus 662 l~l~~c~~L~~l~~~~~ 678 (737)
.+.+|++|+.+++.+|
T Consensus 315 -~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 -TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -GGTTBCCSTTEEC---
T ss_pred -cccccchhhhhhcccc
Confidence 3567788888877654
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.3e-23 Score=220.12 Aligned_cols=299 Identities=15% Similarity=0.122 Sum_probs=242.5
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcc---ccccCcceeeeecCCCCCCCCCC--CCCCCeeEE
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLN 406 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~ 406 (737)
...++.+.+..+.+..++...|..+++|++|++++|.+.+..+ ..+.++++|++.++.+..++... .+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3567888999999999999999999999999999999887655 34567888888888888886543 689999999
Q ss_pred ccCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccc
Q 004686 407 LCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (737)
Q Consensus 407 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (737)
+++|.++.+|.. +..+++|++|++++|.+....+. +..+++|++|++++|.+... .+..+++|++|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999999877 58999999999999998877665 88999999999999876543 36778999999999986542
Q ss_pred cCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhh
Q 004686 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (737)
Q Consensus 485 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (737)
+...++|+.|++++|.+... +. ...++|+.|++++|.++.. ..+..+++|+.|++++|....
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~--------- 262 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK--------- 262 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE---------
T ss_pred -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC---------
Confidence 34456899999999887653 33 2357899999999999976 468899999999999986211
Q ss_pred hcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccc
Q 004686 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLE 644 (737)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~ 644 (737)
.....+.++++|++|++++|.+.. ++..+..+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 263 --------------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 263 --------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp --------------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred --------------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECC
Confidence 111336778999999999999644 6777788999999999999999999889999999999999
Q ss_pred cCccCCCCCCCCCccceeeccccccccccccccc
Q 004686 645 KCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 645 ~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
+|+.... + +..+++|+.+++.+|
T Consensus 327 ~N~i~~~-~----------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 327 HNSIVTL-K----------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SSCCCCC-C----------CCTTCCCSEEECCSS
T ss_pred CCcccee-C----------chhhccCCEEEcCCC
Confidence 9985433 2 344555555555544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.9e-24 Score=219.33 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=194.2
Q ss_pred CCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEE
Q 004686 421 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 500 (737)
Q Consensus 421 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 500 (737)
...+++.|++++|.+...++.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 358999999999998877777888999999999998876 88999999999999999999866 8898999999999999
Q ss_pred ccCCCCCcccCcccCC---------CCcccEEEccCccCcccCcccccCCCCcEEEccCCCCC-CCcCccchhhhcccCC
Q 004686 501 LCGCLKLEKLPQDLGE---------VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ-PPKILSSNFFLSLLLP 570 (737)
Q Consensus 501 l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~ 570 (737)
+++|...+.+|..++. +++|++|++++|.++.+|..+..+++|++|++++|... ++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-------------- 222 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-------------- 222 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC--------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc--------------
Confidence 9999999988887654 99999999999999999999999999999999998722 11
Q ss_pred CCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCCCCCEEccccCccC
Q 004686 571 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
+.+..+++|++|++++|. ..+.+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|+.+
T Consensus 223 -----------~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 223 -----------PAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp -----------GGGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred -----------hhhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 236678999999999998 56778899999999999999998766 88989999999999999999999
Q ss_pred CCCCCCCCccceeeccccccccccccccc
Q 004686 650 KSLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 650 ~~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
+.+|. .+.++++|+.+.+..+
T Consensus 291 ~~iP~--------~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPS--------LIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCG--------GGGGSCTTCEEECCGG
T ss_pred hhccH--------HHhhccCceEEeCCHH
Confidence 88886 5567777777766544
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-23 Score=231.76 Aligned_cols=299 Identities=15% Similarity=0.115 Sum_probs=242.3
Q ss_pred ceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCCC--CCCCCeeEEc
Q 004686 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 407 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~l 407 (737)
..++.+.+..+.+..++...|..+++|++|++++|.+++..+.. +.+|++|++.++.+..++... .+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46678888888899999999999999999999999998765543 557888888888888887653 6899999999
Q ss_pred cCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccccccc
Q 004686 408 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (737)
Q Consensus 408 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (737)
++|.++.+|.. |..+++|++|++++|.+...++. +..+++|++|++++|.+.+. .+..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 99999999877 68999999999999999887775 88999999999999876543 36778999999999986543
Q ss_pred CccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhh
Q 004686 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFL 565 (737)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 565 (737)
+..+.+|+.|++++|.+....+. ..++|+.|++++|.++.. ..+..+++|+.|++++|....
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~---------- 268 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK---------- 268 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE----------
T ss_pred ----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC----------
Confidence 34566899999999887643322 236899999999999875 568899999999999987211
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEcccc
Q 004686 566 SLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK 645 (737)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~ 645 (737)
.....+.++++|+.|++++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++
T Consensus 269 -------------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 269 -------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp -------------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred -------------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCC
Confidence 111336788999999999999644 77777889999999999999999998899999999999999
Q ss_pred CccCCCCCCCCCccceeeccccc
Q 004686 646 CRNLKSLPELPPEIVFVGAEDCT 668 (737)
Q Consensus 646 n~~~~~~~~l~~~L~~l~l~~c~ 668 (737)
|..........++|+.|++++++
T Consensus 334 N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 NSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCcChhhcCCCCEEEeeCCC
Confidence 98654432333566666666543
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.2e-23 Score=238.35 Aligned_cols=342 Identities=18% Similarity=0.144 Sum_probs=227.5
Q ss_pred CCCceEEEcccccCCCcccc---ccCcceeeeecCCCCCCCCC-C-CCCCCeeEEccCCcccccccc-ccCCCCCcEEec
Q 004686 357 SNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNL 430 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l 430 (737)
+++++|++++|.+++..+.. +.+|++|++.++.+..++.. + .+++|++|+|++|.++.+|.. |.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999998765544 46788888888888888764 4 689999999999999999854 899999999999
Q ss_pred CCCcCCCCCCC-CCCCCCCcEEeccCccccc-cccccccCccccceeccccccccccCccccCCCC--------------
Q 004686 431 SHSCNLIRTPD-FTGVPNLERLNLEGCTRLL-EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMK-------------- 494 (737)
Q Consensus 431 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-------------- 494 (737)
++|.+...++. +..+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99988877764 8899999999999998754 4578889999999999999877554443332211
Q ss_pred -------------CccEEEccCCCCCc-----------------------------------------------------
Q 004686 495 -------------SLKILCLCGCLKLE----------------------------------------------------- 508 (737)
Q Consensus 495 -------------~L~~L~l~~~~~~~----------------------------------------------------- 508 (737)
.+..+++.+|....
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 11222222221100
Q ss_pred -----ccC----------------------cccCCCCcccEEEccCccCcccCc--------------------ccccCC
Q 004686 509 -----KLP----------------------QDLGEVECLEELDVGGTAIRQIPP--------------------SIVQLV 541 (737)
Q Consensus 509 -----~~~----------------------~~l~~l~~L~~L~l~~~~~~~l~~--------------------~~~~l~ 541 (737)
... ..+....+|+.|++.++.+..++. ....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 000 011222345555555554432211 122467
Q ss_pred CCcEEEccCCCCCCCcCccc--hhhhcccCCC-------------------------CCCCCccccCCCCCCCCCCcEEe
Q 004686 542 NLKIFSLHGCKGQPPKILSS--NFFLSLLLPN-------------------------KNSDSMCLSFPRFTGLSSLQTLD 594 (737)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~L~~L~ 594 (737)
+|+.+++++|.......... .....+.... .+..........+.++++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 78888887776321111000 0001110000 00011111223355677777777
Q ss_pred ccCCCCCCCCccccccCCCCCCeEeCCCCCCc--ccchhhhcCCCCCEEccccCccCCCCCCCCCccceeeccccccccc
Q 004686 595 LSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLET 672 (737)
Q Consensus 595 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~ 672 (737)
++.|. +.+..+..+..+++|+.|++++|.+. ..|..+..+++|++|+|++|.+....|. .+.++++|+.
T Consensus 452 ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~--------~f~~l~~L~~ 522 (635)
T 4g8a_A 452 ISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--------AFNSLSSLQV 522 (635)
T ss_dssp CTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCE
T ss_pred ccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH--------HHcCCCCCCE
Confidence 77777 44555666777888888888888644 3566778888888888888875554443 3567889999
Q ss_pred ccccccccCCCCceEEEecCCCccccccccchHHHH
Q 004686 673 ISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVT 708 (737)
Q Consensus 673 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 708 (737)
|+++.| .+....+..+.++++|++|++++|.++..
T Consensus 523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp EECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred EECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 988887 56666677889999999999999988654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=217.68 Aligned_cols=275 Identities=13% Similarity=0.100 Sum_probs=211.3
Q ss_pred cCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCC-C-CCCCCeeEEccCCcccccc-ccccCCCCCcEEecC
Q 004686 355 TMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLS 431 (737)
Q Consensus 355 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~ 431 (737)
.|+...+.+++++.++........+++.|++.++.+..++.. + .+++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 455556677788777776666667888888888888887762 3 6789999999999999875 458889999999999
Q ss_pred CCcCCCCCCC-CCCCCCCcEEeccCcccccccc-ccccCccccceeccccccccc-cCccccCCCCCccEEEccCCCCCc
Q 004686 432 HSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLE 508 (737)
Q Consensus 432 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 508 (737)
+|.+...++. +..+++|++|++++|.+....+ ..+..+++|++|++++|...+ ..+..+..+++|++|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 9988776655 7889999999999987654333 378889999999999985444 445678889999999999998888
Q ss_pred ccCcccCCCCcccEEEccCccCcccCccc-ccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCC
Q 004686 509 KLPQDLGEVECLEELDVGGTAIRQIPPSI-VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGL 587 (737)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (737)
..|..++.+++|++|++++|.++.+|..+ ..+++|+.|++++|....... ..+.....+
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------------------~~l~~~~~~ 248 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF--------------------SELSTGETN 248 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC--------------------C------CC
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc--------------------ccccccccc
Confidence 77888999999999999999988777654 358899999999886221100 111223456
Q ss_pred CCCcEEeccCCCCCCC---CccccccCCCCCCeEeCCCCCCcccchh-hhcCCCCCEEccccCccC
Q 004686 588 SSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKLKILCLEKCRNL 649 (737)
Q Consensus 588 ~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~ 649 (737)
+.++.++++++.+... .+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+..
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6788888888873221 3677788899999999999999988876 488999999999999844
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=216.95 Aligned_cols=242 Identities=21% Similarity=0.223 Sum_probs=181.8
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 458 (737)
..++..+..+..+|..++ .++++|++++|.++.++ ..|..+++|+.|++++|.+....+. +.++++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 455666667777777654 57888888888888775 5578888888888888877665543 77788888888888776
Q ss_pred cccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCc-ccCCCCcccEEEccCccCcccCccc
Q 004686 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPSI 537 (737)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l~~~~ 537 (737)
....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+.++++|++|++++|.++.+|. +
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 203 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L 203 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c
Confidence 655556788888888888888876655555778888888888888666655544 57788888888888888888874 6
Q ss_pred ccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCe
Q 004686 538 VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 617 (737)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 617 (737)
..+++|+.|++++|.... .....+.++++|+.|++++|. +++..+..+..+++|+.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCE
T ss_pred CCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCE
Confidence 778888888888876211 111346778888888888888 55556667788888888
Q ss_pred EeCCCCCCcccch-hhhcCCCCCEEccccCcc
Q 004686 618 IDLSGNNFFSLPS-SINQLLKLKILCLEKCRN 648 (737)
Q Consensus 618 L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~ 648 (737)
|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 8888888886665 457788888888888874
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=7.3e-23 Score=208.63 Aligned_cols=243 Identities=20% Similarity=0.240 Sum_probs=171.6
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCC---CCCCCCCCCcEEeccCc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRT---PDFTGVPNLERLNLEGC 456 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~ 456 (737)
+.++..+..++.+|..++ ++|++|++++|.++.+|.. +..+++|++|++++|.+.... ..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 345566666677776554 5788888888888877765 677888888888888665431 23456778888888887
Q ss_pred cccccccccccCccccceeccccccccccCc-cccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcc--c
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--I 533 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l 533 (737)
.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 654 456667788888888888876654433 467778888888888887777677777788888888888887764 6
Q ss_pred CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCC
Q 004686 534 PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLF 613 (737)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 613 (737)
|..+..+++|++|++++|.... .....+..+++|++|++++|. +++..+..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 223 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQ-----------------------LSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLN 223 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCT
T ss_pred hhHHhhCcCCCEEECCCCCcCC-----------------------cCHHHhcCCCCCCEEECCCCc-cCccChhhccCcc
Confidence 7777778888888887775210 111235667788888888887 4444444677788
Q ss_pred CCCeEeCCCCCCcc-cchhhhcCC-CCCEEccccCccC
Q 004686 614 SLEAIDLSGNNFFS-LPSSINQLL-KLKILCLEKCRNL 649 (737)
Q Consensus 614 ~L~~L~l~~n~l~~-lp~~l~~l~-~L~~L~l~~n~~~ 649 (737)
+|+.|++++|.++. .|..+..++ +|+.|++++|+..
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 88888888888773 445666664 7888888888754
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2e-22 Score=217.15 Aligned_cols=242 Identities=22% Similarity=0.209 Sum_probs=182.2
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 458 (737)
..++..+..+..+|..++ +++++|++++|.++.++ ..|..+++|+.|++++|.+....+. +.++++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 455566666777776654 58888888888888774 5588888888888888877766653 77888888888888876
Q ss_pred cccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCc-ccCCCCcccEEEccCccCcccCccc
Q 004686 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPSI 537 (737)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l~~~~ 537 (737)
....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+.++++|++|++++|.++.+|. +
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-L 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-c
Confidence 655556688888888888888876655555678888888888888666665544 57788888888888888888764 6
Q ss_pred ccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCe
Q 004686 538 VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 617 (737)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 617 (737)
..+++|+.|++++|.... .....+.++++|+.|++++|. +++..+..+..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred cccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCE
Confidence 778888888888876211 011236677888888888888 55556677788888888
Q ss_pred EeCCCCCCcccch-hhhcCCCCCEEccccCcc
Q 004686 618 IDLSGNNFFSLPS-SINQLLKLKILCLEKCRN 648 (737)
Q Consensus 618 L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~ 648 (737)
|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 8888888887665 457788888888888874
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=5.2e-22 Score=218.89 Aligned_cols=233 Identities=20% Similarity=0.137 Sum_probs=137.7
Q ss_pred CCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCC
Q 004686 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~ 436 (737)
.++++|+++++.++.......++++.|++.++.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 467888888887775444445677777777777777766 45677777777777777665 5567777777777655
Q ss_pred CCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCC
Q 004686 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (737)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 516 (737)
..+. .+++|++|++++|.+. .+|.. +++|++|++++|.+. .+|. .+.+|+.|++++|.+.+ +| ..
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~---~~ 179 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP---ML 179 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc---cc
Confidence 5433 4566777777766543 33432 366666666666543 3333 23456666666665543 33 33
Q ss_pred CCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEecc
Q 004686 517 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLS 596 (737)
Q Consensus 517 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 596 (737)
+++|+.|++++|.++.+|.. +++|+.|++++|.... ++ ..+++|++|+++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-------------------------l~--~~~~~L~~L~Ls 229 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-------------------------LP--ALPSGLKELIVS 229 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-------------------------CC--CCCTTCCEEECC
T ss_pred CCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-------------------------cC--CCCCCCCEEEcc
Confidence 45666666666666665542 3556666666554110 01 113456666666
Q ss_pred CCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCc
Q 004686 597 DCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 647 (737)
+|.+.. +| ..+++|+.|++++|.++.+|. .+++|+.|+|++|.
T Consensus 230 ~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 230 GNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp SSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC
Confidence 665322 44 334566666666666665554 45566666666665
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=5.6e-23 Score=209.52 Aligned_cols=243 Identities=21% Similarity=0.263 Sum_probs=195.8
Q ss_pred ceEEEcccccCCCccccccCcceeeeecCCCCCCCCCC--CCCCCeeEEccCCccccc---cccccCCCCCcEEecCCCc
Q 004686 360 RLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYL---WKGIKPLKELKFMNLSHSC 434 (737)
Q Consensus 360 ~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~ 434 (737)
+.++++++.++........+++.|++.++.+..+|... .+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 46677777666655556678888888888888888753 678999999999988855 4567778999999999998
Q ss_pred CCCCCCCCCCCCCCcEEeccCcccccccc-ccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCc-ccCc
Q 004686 435 NLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQ 512 (737)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~ 512 (737)
+...+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 77655567888999999999987665544 578889999999999988877777888889999999999988876 5788
Q ss_pred ccCCCCcccEEEccCccCccc-CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCc
Q 004686 513 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (737)
Q Consensus 513 ~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (737)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|..... ....+..+++|+
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~ 226 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----------------------DTFPYKCLNSLQ 226 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----------------------CSGGGTTCTTCC
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----------------------ChhhccCcccCC
Confidence 889999999999999999866 56788899999999998872211 011256789999
Q ss_pred EEeccCCCCCCCCccccccCCC-CCCeEeCCCCCCc
Q 004686 592 TLDLSDCNLLEGAIPSDIGSLF-SLEAIDLSGNNFF 626 (737)
Q Consensus 592 ~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~ 626 (737)
.|++++|. +++..+..+..++ +|++|++++|.++
T Consensus 227 ~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 99999998 6667777888884 9999999999887
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.4e-22 Score=218.44 Aligned_cols=221 Identities=21% Similarity=0.206 Sum_probs=171.7
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
....++.++.+++.+|..+. ++|+.|++++|.+....+. |..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888889998887765 6899999999988776554 88889999999999887777678888899999999998
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccC-ccCcccCc-ccccCCCCcEEEccCCCCCCCc
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPP-SIVQLVNLKIFSLHGCKGQPPK 557 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~ 557 (737)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++ +.+..++. .+..+++|++|++++|...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 876655556678888899999988887765566788888899998887 45666654 4677888888888877621
Q ss_pred CccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCC
Q 004686 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLL 636 (737)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~ 636 (737)
.++.+..+++|++|++++|. +++..|..+.++++|+.|++++|.++.+ |..+..++
T Consensus 210 ----------------------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 210 ----------------------DMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp ----------------------SCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ----------------------ccccccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 12346677888888888888 5555677788888888888888888744 45677888
Q ss_pred CCCEEccccCccC
Q 004686 637 KLKILCLEKCRNL 649 (737)
Q Consensus 637 ~L~~L~l~~n~~~ 649 (737)
+|+.|+|++|.+.
T Consensus 267 ~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 267 SLVELNLAHNNLS 279 (452)
T ss_dssp TCCEEECCSSCCS
T ss_pred CCCEEECCCCcCC
Confidence 8888888888643
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=217.49 Aligned_cols=221 Identities=21% Similarity=0.223 Sum_probs=172.3
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
....++.++..++.+|..+. ++++.|++++|.+....+ .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45688889999999998765 689999999998877665 488899999999999887766667888899999999998
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccC-ccCcccCc-ccccCCCCcEEEccCCCCCCCc
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPP-SIVQLVNLKIFSLHGCKGQPPK 557 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~ 557 (737)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++ +.+..++. .+..+++|++|++++|...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 876655555688888999999998887766666788888999999887 45566654 4677888888888887621
Q ss_pred CccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc-chhhhcCC
Q 004686 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLL 636 (737)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~l~ 636 (737)
.++.+..+++|++|++++|. +++..|..+..+++|+.|++++|.++.+ +..+..++
T Consensus 199 ----------------------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 199 ----------------------EIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp ----------------------SCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred ----------------------cccccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 12346677888888888887 5555577788888888888888888854 44677888
Q ss_pred CCCEEccccCccC
Q 004686 637 KLKILCLEKCRNL 649 (737)
Q Consensus 637 ~L~~L~l~~n~~~ 649 (737)
+|+.|+|++|...
T Consensus 256 ~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 256 SLVEINLAHNNLT 268 (440)
T ss_dssp TCCEEECTTSCCC
T ss_pred CCCEEECCCCCCC
Confidence 8888888888644
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=3.2e-25 Score=240.54 Aligned_cols=359 Identities=16% Similarity=0.129 Sum_probs=236.6
Q ss_pred ceEEEEEecCCcccccChhh-hhcCCCCceEEEcccccCCC----cccc---ccCcceeeeecCCCCCCC-----CCCC-
Q 004686 333 DAVEAIIVDVPEMTELEAKS-FSTMSNLRLLEINNLYSSGN----LEYL---SNNLRYLKWHEYPFNSLP-----VSFR- 398 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~---~~~l~~L~~~~~~~~~l~-----~~~~- 398 (737)
..++.+.+.++.+....... +..+++|++|++++|.+++. ++.. ++++++|++.++.+.... ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888887766555544 78899999999999988753 2333 356777777766544311 1111
Q ss_pred -CCCCeeEEccCCccc-----cccccccCCCCCcEEecCCCcCCCCCCC------CCCCCCCcEEeccCcccccc----c
Q 004686 399 -PEKLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIRTPD------FTGVPNLERLNLEGCTRLLE----V 462 (737)
Q Consensus 399 -~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~----~ 462 (737)
.++|++|++++|.++ .++..+..+++|++|++++|.+...... ....++|++|++++|.+... +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 127999999999988 4577788999999999999976533211 23356799999999876653 3
Q ss_pred cccccCccccceeccccccccccCccccC-----CCCCccEEEccCCCCCcc----cCcccCCCCcccEEEccCccCccc
Q 004686 463 HQSVGTLKRLILLNLKDCRNLVSFPKNVC-----LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIRQI 533 (737)
Q Consensus 463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~l 533 (737)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55667789999999999886543333232 356899999999987663 466777889999999999988742
Q ss_pred ------CcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccc
Q 004686 534 ------PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS 607 (737)
Q Consensus 534 ------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 607 (737)
+.....+++|++|++++|........ .+ ...+..+++|++|++++|.+ ++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l----------------~~~l~~~~~L~~L~Ls~n~i-~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG---DL----------------CRVLRAKESLKELSLAGNEL-GDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---HH----------------HHHHHHCTTCCEEECTTCCC-HHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---HH----------------HHHHhhCCCcceEECCCCCC-chHHHH
Confidence 22223588999999998862210000 00 01134578899999998874 322222
Q ss_pred cc-----cCCCCCCeEeCCCCCCcc-----cchhhhcCCCCCEEccccCccCCCCCC-CCCccceeeccccccccccccc
Q 004686 608 DI-----GSLFSLEAIDLSGNNFFS-----LPSSINQLLKLKILCLEKCRNLKSLPE-LPPEIVFVGAEDCTSLETISAF 676 (737)
Q Consensus 608 ~l-----~~~~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~~~~~~~~-l~~~L~~l~l~~c~~L~~l~~~ 676 (737)
.+ ...++|++|++++|.++. ++..+..+++|++|++++|......+. +...+ -..+++|+.|++.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL----GQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH----TSTTCCCCEEECT
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH----cCCCCceEEEECC
Confidence 22 234689999999998873 456678889999999999875432110 00000 0013444444444
Q ss_pred ccccCCC----CceEEEecCCCccccccccchHHHHHHHHHHHH
Q 004686 677 AKLSRSP----NIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLV 716 (737)
Q Consensus 677 ~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 716 (737)
.| .+.. .++..+..|++|++|++++|.++......+...
T Consensus 379 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 379 DC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp TS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred CC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 44 2222 335566778899999999998887776666544
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.5e-21 Score=196.63 Aligned_cols=202 Identities=24% Similarity=0.206 Sum_probs=103.3
Q ss_pred CCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccccc-cCccccCCCCCccEEEc
Q 004686 424 ELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV-SFPKNVCLMKSLKILCL 501 (737)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l 501 (737)
+|+.|++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|...+ ..|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 444444444443333322 3444444444444444333333444444444444444443222 22334444555555555
Q ss_pred cCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCcccc
Q 004686 502 CGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLS 580 (737)
Q Consensus 502 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (737)
++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.... ..
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~ 169 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-----------------------VP 169 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-----------------------EC
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-----------------------cC
Confidence 55544444444445555555555555555544432 4445555555555543110 00
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEccccCccC
Q 004686 581 FPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 581 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~ 649 (737)
...+.++++|++|++++|. +++..|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 1124556677777777776 444456666777777777777777776554 4677777777777777643
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=4.3e-21 Score=211.57 Aligned_cols=260 Identities=20% Similarity=0.148 Sum_probs=213.4
Q ss_pred eEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccc
Q 004686 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 413 (737)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 413 (737)
.++.+.+..+.+..++.... ++|++|++++|.++. +|..+.+|+.|++.++.+..+|. .+++|++|++++|.++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 46788998888877765433 799999999999985 45578899999999999999998 6789999999999999
Q ss_pred cccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCC
Q 004686 414 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 493 (737)
Q Consensus 414 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 493 (737)
.+|. .+++|+.|++++|.+...+.. +++|++|++++|.+. .+|. .+++|+.|++++|.+. .+| ..+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~---~~~ 180 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP---MLP 180 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC---CCC
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc---ccC
Confidence 9987 578999999999987765543 489999999998765 3443 3578999999998754 466 467
Q ss_pred CCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCC
Q 004686 494 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 573 (737)
Q Consensus 494 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (737)
++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|....
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~------------------ 235 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS------------------ 235 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC------------------
T ss_pred CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc------------------
Confidence 899999999998764 554 357899999999999998863 5899999999886211
Q ss_pred CCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCC
Q 004686 574 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSL 652 (737)
Q Consensus 574 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~ 652 (737)
++ ..+++|+.|++++|.+.. +|. .+++|+.|++++|.++.+|..+..+++|+.|+|++|+.....
T Consensus 236 -------lp--~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 236 -------LP--VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -------CC--CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -------CC--CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 11 356889999999999643 666 678999999999999999999999999999999999966543
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=211.67 Aligned_cols=242 Identities=20% Similarity=0.187 Sum_probs=192.1
Q ss_pred eeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcccc
Q 004686 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 459 (737)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 459 (737)
..+..++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+....+. +..+++|++|++++|.+.
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 36777888899998765 489999999999999886 689999999999999988877664 889999999999998876
Q ss_pred ccccccccCccccceeccccccccccCcc--ccCCCCCccEEEccCCC-CCcccCcccCCCCcccEEEccCccCccc-Cc
Q 004686 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPK--NVCLMKSLKILCLCGCL-KLEKLPQDLGEVECLEELDVGGTAIRQI-PP 535 (737)
Q Consensus 460 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~ 535 (737)
...+..+..+++|++|++++|.+. .+|. .+..+++|++|++++|. +.+..+..++.+++|++|++++|.++.+ |.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 554455899999999999998765 4554 68899999999999985 4444467889999999999999999855 77
Q ss_pred ccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccc---cCC
Q 004686 536 SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI---GSL 612 (737)
Q Consensus 536 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~ 612 (737)
.+..+++|++|++++|..... ....+..+++|++|++++|.+ ++..+..+ ..+
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILL-----------------------LEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETN 248 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTH-----------------------HHHHHHHTTTEEEEEEESCBC-TTCCCC------CC
T ss_pred HHhccccCCeecCCCCccccc-----------------------hhhhhhhcccccEEECCCCcc-cccccccccccccc
Confidence 888999999999998862110 001123478999999999984 43333222 345
Q ss_pred CCCCeEeCCCCCCc-----ccchhhhcCCCCCEEccccCccC
Q 004686 613 FSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 613 ~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
+.++.++++++.++ .+|..+..+++|++|++++|...
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 67888888888766 47778899999999999999754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=3.1e-23 Score=212.03 Aligned_cols=211 Identities=18% Similarity=0.141 Sum_probs=97.2
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
+|++|++++|.+..+++ +..+++|++|++++|.+.... ..++|++|++++|.+.+..+. .+++|++|++++|
T Consensus 59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N 130 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANN 130 (317)
T ss_dssp TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSS
T ss_pred cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCC
Confidence 45555555555554433 455555555555555433221 224555555555444332221 2344555555555
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCccc-CCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCC-CCcC
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDL-GEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ-PPKI 558 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~ 558 (737)
.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.++.. ..+++|+.|++++|... ++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~-- 207 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMG-- 207 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEEC--
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcch--
Confidence 4444334344445555555555555444333333 2345555555555555544322 23444555555444311 00
Q ss_pred ccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc--ccchhhhcCC
Q 004686 559 LSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLL 636 (737)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~l~ 636 (737)
+.+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 208 -----------------------~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 208 -----------------------PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp -----------------------GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred -----------------------hhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 113334445555555554322 4444445555555555555554 3444445555
Q ss_pred CCCEEccccCc
Q 004686 637 KLKILCLEKCR 647 (737)
Q Consensus 637 ~L~~L~l~~n~ 647 (737)
+|+.|++++|.
T Consensus 263 ~L~~l~l~~~~ 273 (317)
T 3o53_A 263 RVQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred cceEEECCCch
Confidence 55555555443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.2e-22 Score=207.20 Aligned_cols=241 Identities=21% Similarity=0.175 Sum_probs=181.4
Q ss_pred CcceeeeecCCCCCCCCCCCCCCCeeEEccCCcccc--cccccc-------CCCCCcEEecCCCcCCCCCCC-C--CCCC
Q 004686 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKY--LWKGIK-------PLKELKFMNLSHSCNLIRTPD-F--TGVP 446 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~--l~~~~~-------~l~~L~~L~l~~~~~~~~~~~-~--~~~~ 446 (737)
+++.|.+.++.+ .+|..++. .|++|++++|.+.. ++..+. .+++|++|++++|.+....+. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 344455555555 44443322 27777888888753 444444 689999999999988865554 4 7899
Q ss_pred CCcEEeccCccccccccccccCc-----cccceeccccccccccCccccCCCCCccEEEccCCCCCcc--cCccc--CCC
Q 004686 447 NLERLNLEGCTRLLEVHQSVGTL-----KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--LPQDL--GEV 517 (737)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l 517 (737)
+|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+. ++..+ +.+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999887665 7777766 8999999999988777778899999999999999987664 33344 788
Q ss_pred CcccEEEccCccCcccC---c-ccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEE
Q 004686 518 ECLEELDVGGTAIRQIP---P-SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTL 593 (737)
Q Consensus 518 ~~L~~L~l~~~~~~~l~---~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 593 (737)
++|++|++++|.++.++ . .+..+++|+.|++++|..... ...+.+..+++|++|
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA----------------------AGAPSCDWPSQLNSL 258 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------------------CCCSCCCCCTTCCEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------------------cchhhhhhcCCCCEE
Confidence 99999999999998443 2 234678999999998872211 112335567899999
Q ss_pred eccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccC
Q 004686 594 DLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 594 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
++++|.+. .+|..+. ++|++|++++|.++.+|. +..+++|++|++++|+..
T Consensus 259 ~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 259 NLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred ECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 99999954 5787766 889999999999998876 889999999999999854
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=4.1e-21 Score=193.36 Aligned_cols=221 Identities=21% Similarity=0.212 Sum_probs=183.2
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCcc-
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCT- 457 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~- 457 (737)
+.++..+..+..+|..+ +++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666666777777655 4689999999999998874 58999999999999998877655 48889999999999987
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-c
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-S 536 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~ 536 (737)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++. .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 444446789999999999999998877777888999999999999998877666678999999999999999998876 4
Q ss_pred cccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCC
Q 004686 537 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (737)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 616 (737)
+..+++|+.|++++|.... .....+..+++|++|++++|. +++..+..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAH-----------------------VHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCC
T ss_pred hcCccccCEEECCCCcccc-----------------------cCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccC
Confidence 7889999999999986211 112346788999999999999 5555556789999999
Q ss_pred eEeCCCCCCc
Q 004686 617 AIDLSGNNFF 626 (737)
Q Consensus 617 ~L~l~~n~l~ 626 (737)
.|++++|.+.
T Consensus 229 ~L~l~~N~~~ 238 (285)
T 1ozn_A 229 YLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCEE
T ss_pred EEeccCCCcc
Confidence 9999999887
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=2.6e-22 Score=205.25 Aligned_cols=215 Identities=15% Similarity=0.072 Sum_probs=167.6
Q ss_pred CCCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecc
Q 004686 399 PEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (737)
+++|++|++++|.++.++ ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. ..+++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 458889999999888775 568889999999999998765544 78889999999999875432 23488999999
Q ss_pred ccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccC-ccc-ccCCCCcEEEccCCCCCC
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSI-VQLVNLKIFSLHGCKGQP 555 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~-~~l~~L~~L~l~~~~~~~ 555 (737)
++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|....
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99876554433 3678999999998888776777888899999999999888653 334 468899999998876211
Q ss_pred CcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcC
Q 004686 556 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (737)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l 635 (737)
++....+++|++|++++|.+.. +|..+..+++|+.|++++|.++.+|..+..+
T Consensus 184 -------------------------~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 184 -------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp -------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred -------------------------cccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 1223357889999999998543 6666888889999999999998888888888
Q ss_pred CCCCEEccccCccC
Q 004686 636 LKLKILCLEKCRNL 649 (737)
Q Consensus 636 ~~L~~L~l~~n~~~ 649 (737)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999998865
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.6e-22 Score=214.00 Aligned_cols=234 Identities=15% Similarity=0.064 Sum_probs=182.6
Q ss_pred CCCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecc
Q 004686 399 PEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (737)
+++|++|++++|.+..++ ..|..+++|++|++++|.+...++ +..+++|++|++++|.+.+. | ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence 448999999999998775 568899999999999998776555 88899999999999875533 2 3388999999
Q ss_pred ccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcc-cCcccc-cCCCCcEEEccCCCCCC
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIV-QLVNLKIFSLHGCKGQP 555 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L~l~~~~~~~ 555 (737)
++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|+.|++++|....
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99887655443 46789999999999888778888899999999999999985 455554 68999999999887211
Q ss_pred CcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcC
Q 004686 556 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (737)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l 635 (737)
++....+++|+.|++++|.+.. +|..+..+++|+.|++++|.++.+|..+..+
T Consensus 184 -------------------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 184 -------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp -------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred -------------------------ccccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 1224468899999999999543 5566888999999999999999999888899
Q ss_pred CCCCEEccccCccC-CCCCCCCCccceeeccccccccccccc
Q 004686 636 LKLKILCLEKCRNL-KSLPELPPEIVFVGAEDCTSLETISAF 676 (737)
Q Consensus 636 ~~L~~L~l~~n~~~-~~~~~l~~~L~~l~l~~c~~L~~l~~~ 676 (737)
++|+.|++++|+.. ..+|. .+..++.|+.+...
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~--------~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRD--------FFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHH--------HHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHH--------HHHhCCCCcEEecc
Confidence 99999999999865 22222 23455666665553
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.4e-21 Score=209.61 Aligned_cols=213 Identities=17% Similarity=0.113 Sum_probs=158.0
Q ss_pred CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecc
Q 004686 398 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (737)
.+++|++|++++|.+...++ +..+++|++|++++|.+...+ ..++|++|++++|.+.+..+. .+++|++|++
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L 127 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred CCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence 34577788888887776655 777888888888887665433 236788888888776554433 3577888888
Q ss_pred ccccccccCccccCCCCCccEEEccCCCCCcccCcccC-CCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCC
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG-EVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPP 556 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 556 (737)
++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++.+|. ...+++|+.|++++|.....
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC
Confidence 88877776677777888888888888887776666665 67888888888888887754 33578888888888762110
Q ss_pred cCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc--ccchhhhc
Q 004686 557 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQ 634 (737)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~ 634 (737)
.+.+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|.++..
T Consensus 207 ------------------------~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 207 ------------------------GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp ------------------------CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ------------------------CHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 1225567889999999988543 7888888899999999999888 67778888
Q ss_pred CCCCCEEcccc
Q 004686 635 LLKLKILCLEK 645 (737)
Q Consensus 635 l~~L~~L~l~~ 645 (737)
+++|+.++++.
T Consensus 261 l~~L~~l~~~~ 271 (487)
T 3oja_A 261 NQRVQTVAKQT 271 (487)
T ss_dssp CHHHHHHHHHH
T ss_pred CCCCcEEeccc
Confidence 88888888863
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4e-23 Score=223.94 Aligned_cols=320 Identities=16% Similarity=0.116 Sum_probs=223.4
Q ss_pred ceEEEEEecCCcccccC----hhhhhcCCCCceEEEcccccCCCcc----cccc----CcceeeeecCCCCC-----CCC
Q 004686 333 DAVEAIIVDVPEMTELE----AKSFSTMSNLRLLEINNLYSSGNLE----YLSN----NLRYLKWHEYPFNS-----LPV 395 (737)
Q Consensus 333 ~~~~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~----~l~~L~~~~~~~~~-----l~~ 395 (737)
..++.+.+..+.+.... ...+..+++|++|++++|.+.+..+ ..+. ++++|++.++.+.. ++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 35678888887655432 3456778999999999998876322 2233 68888888887663 333
Q ss_pred CC-CCCCCeeEEccCCccccc-----ccc-ccCCCCCcEEecCCCcCCCCCC-----CCCCCCCCcEEeccCcccccccc
Q 004686 396 SF-RPEKLFKLNLCNSRIKYL-----WKG-IKPLKELKFMNLSHSCNLIRTP-----DFTGVPNLERLNLEGCTRLLEVH 463 (737)
Q Consensus 396 ~~-~~~~L~~L~l~~~~i~~l-----~~~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~ 463 (737)
.+ .+++|++|++++|.++.. ... ....++|++|++++|.+..... .+..+++|++|++++|.+....+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 33 578999999999998742 222 3346789999999998765431 25567999999999998655433
Q ss_pred cccc-----Cccccceecccccccccc----CccccCCCCCccEEEccCCCCCccc-----CcccCCCCcccEEEccCcc
Q 004686 464 QSVG-----TLKRLILLNLKDCRNLVS----FPKNVCLMKSLKILCLCGCLKLEKL-----PQDLGEVECLEELDVGGTA 529 (737)
Q Consensus 464 ~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~ 529 (737)
..+. .+++|++|++++|.+... ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 366999999999987653 5677788999999999999875432 2223468899999999999
Q ss_pred Ccc-----cCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCC-
Q 004686 530 IRQ-----IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG- 603 (737)
Q Consensus 530 ~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 603 (737)
++. ++..+..+++|+.|++++|...... ...+.. ......++|++|++++|.+...
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~---~~~l~~---------------~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEG---ARLLCE---------------TLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH---HHHHHH---------------HHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHH---HHHHHH---------------HhccCCccceeeEcCCCCCchHH
Confidence 985 7778888999999999998621100 000000 0012346899999999984332
Q ss_pred --CccccccCCCCCCeEeCCCCCCccc-chhhhc-----CCCCCEEccccCccCC----CCCCCCCccceeecccccccc
Q 004686 604 --AIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQ-----LLKLKILCLEKCRNLK----SLPELPPEIVFVGAEDCTSLE 671 (737)
Q Consensus 604 --~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~-----l~~L~~L~l~~n~~~~----~~~~l~~~L~~l~l~~c~~L~ 671 (737)
.++..+..+++|++|++++|.++.. +..+.. +++|++|++++|.... .++. .+..|++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--------~l~~~~~L~ 401 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--------TLLANHSLR 401 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--------HHHHCCCCC
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--------HHHhCCCcc
Confidence 1456677889999999999988743 333332 6799999999997553 3332 234566666
Q ss_pred ccccccc
Q 004686 672 TISAFAK 678 (737)
Q Consensus 672 ~l~~~~~ 678 (737)
.+++..|
T Consensus 402 ~L~l~~N 408 (461)
T 1z7x_W 402 ELDLSNN 408 (461)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666655
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=5.1e-20 Score=184.41 Aligned_cols=219 Identities=21% Similarity=0.201 Sum_probs=131.8
Q ss_pred eeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccc
Q 004686 383 LKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLL 460 (737)
Q Consensus 383 L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 460 (737)
.+..+..+..+|..++ ++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|.+.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344455666666553 467777777777776664 56777777777777776655544 36667777777777766555
Q ss_pred cccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCc-ccCcccCCCCcccEEEccCccCcccCc-ccc
Q 004686 461 EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIPP-SIV 538 (737)
Q Consensus 461 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~ 538 (737)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.++.++. .+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 555566666666666666665544444345566666666666665544 245556666666666666666554432 222
Q ss_pred cCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCc-EEeccCCCCCCCCccccccCCCCCCe
Q 004686 539 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCNLLEGAIPSDIGSLFSLEA 617 (737)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~ 617 (737)
.+++| +.|. +|++++|.+.. ++.......+|+.
T Consensus 171 ~l~~L--------------------------------------------~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~ 204 (276)
T 2z62_A 171 VLHQM--------------------------------------------PLLNLSLDLSLNPMNF--IQPGAFKEIRLKE 204 (276)
T ss_dssp HHHTC--------------------------------------------TTCCEEEECCSSCCCE--ECTTSSCSCCEEE
T ss_pred hhhhc--------------------------------------------cccceeeecCCCcccc--cCccccCCCcccE
Confidence 22222 2222 56666666322 3333333446777
Q ss_pred EeCCCCCCcccchh-hhcCCCCCEEccccCcc
Q 004686 618 IDLSGNNFFSLPSS-INQLLKLKILCLEKCRN 648 (737)
Q Consensus 618 L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~ 648 (737)
|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 77777777766653 46677777777777764
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2e-19 Score=179.16 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=76.4
Q ss_pred CeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 402 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
.++++++++.++.+|..+. ++|+.|++++|.+...++ .+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555554432 455555555555544443 2555555555555555443333333455555555555555
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCC
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGC 551 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 551 (737)
.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 44433333445556666666666555554445555666666666666666555433 333444444444443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=5.5e-22 Score=202.28 Aligned_cols=244 Identities=19% Similarity=0.174 Sum_probs=186.5
Q ss_pred hhhcCCCCceEEEcccccCCCccc-cccCcceeeeecCCCCC--CCCCC--------CCCCCeeEEccCCccc-cccccc
Q 004686 352 SFSTMSNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFNS--LPVSF--------RPEKLFKLNLCNSRIK-YLWKGI 419 (737)
Q Consensus 352 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~~~~~~~~--l~~~~--------~~~~L~~L~l~~~~i~-~l~~~~ 419 (737)
.+...++|+.|++++|.+ ..|. ....++.|++.++.+.. ++... .+++|++|++++|.++ .+|..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345667788888888888 3343 44457777777766643 33333 3789999999999998 577765
Q ss_pred --cCCCCCcEEecCCCcCCCCCCCCCCC-----CCCcEEeccCccccccccccccCccccceecccccccccc--Ccccc
Q 004686 420 --KPLKELKFMNLSHSCNLIRTPDFTGV-----PNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS--FPKNV 490 (737)
Q Consensus 420 --~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~ 490 (737)
..+++|++|++++|.+...+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 88999999999999888774335444 8999999999988777778899999999999999987654 33344
Q ss_pred --CCCCCccEEEccCCCCCc--ccC-cccCCCCcccEEEccCccCcccC--cccccCCCCcEEEccCCCCC-CCcCccch
Q 004686 491 --CLMKSLKILCLCGCLKLE--KLP-QDLGEVECLEELDVGGTAIRQIP--PSIVQLVNLKIFSLHGCKGQ-PPKILSSN 562 (737)
Q Consensus 491 --~~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~ 562 (737)
..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.++..+ ..+..+++|++|++++|... +|
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip------ 269 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP------ 269 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC------
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh------
Confidence 789999999999998763 222 33457899999999999998654 44566899999999998722 21
Q ss_pred hhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcc
Q 004686 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS 627 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 627 (737)
..+. ++|++|++++|++.. +|. +..+++|++|++++|.++.
T Consensus 270 -------------------~~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 -------------------KGLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -------------------SSCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTC
T ss_pred -------------------hhcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCC
Confidence 1122 789999999999543 466 8899999999999998864
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1e-19 Score=182.19 Aligned_cols=217 Identities=21% Similarity=0.209 Sum_probs=133.7
Q ss_pred eEEccCCccccccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccccccc
Q 004686 404 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (737)
Q Consensus 404 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (737)
+.+..+.++..+|..+. ++|++|++++|.+....+ .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45556666666766553 467777777776665554 366667777777777655544445566666666666666655
Q ss_pred cccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcc--cCcccccCCCCcEEEccCCCCCCCcCcc
Q 004686 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--IPPSIVQLVNLKIFSLHGCKGQPPKILS 560 (737)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 560 (737)
.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++. +|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~------------------------ 144 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY------------------------ 144 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG------------------------
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh------------------------
Confidence 54444555556666666666655544444345555555555555555543 2333
Q ss_pred chhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCC----eEeCCCCCCcccchhhhcCC
Q 004686 561 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE----AIDLSGNNFFSLPSSINQLL 636 (737)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~----~L~l~~n~l~~lp~~l~~l~ 636 (737)
+.++++|++|++++|. +++..+..+..+++|+ .|++++|.++.++.......
T Consensus 145 -----------------------~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~ 200 (276)
T 2z62_A 145 -----------------------FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (276)
T ss_dssp -----------------------GGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC
T ss_pred -----------------------hccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC
Confidence 3445666667777766 3333344555555555 89999999998877666667
Q ss_pred CCCEEccccCccCCCCCCCCCccceeeccccccccccccccc
Q 004686 637 KLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (737)
Q Consensus 637 ~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~ 678 (737)
+|+.|++++|.... +|. . .+.++++|+.+++..|
T Consensus 201 ~L~~L~L~~n~l~~-~~~---~----~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 201 RLKELALDTNQLKS-VPD---G----IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEEECCSSCCSC-CCT---T----TTTTCCSCCEEECCSS
T ss_pred cccEEECCCCceee-cCH---h----HhcccccccEEEccCC
Confidence 89999999998543 331 1 1355667777766665
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.1e-19 Score=174.81 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=137.6
Q ss_pred CcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCc
Q 004686 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 456 (737)
..+.+++.++.++.+|..++ .++++|++++|.++.++. .|..+++|++|++++|.+...++. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34566667777777776654 689999999999998875 588999999999999988876665 678999999999998
Q ss_pred cccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 536 (737)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 87766667789999999999999887777677788999999999999988766566688999999999999999877653
Q ss_pred -cccCCCCcEEEccCC
Q 004686 537 -IVQLVNLKIFSLHGC 551 (737)
Q Consensus 537 -~~~l~~L~~L~l~~~ 551 (737)
+..+++|+.|++++|
T Consensus 176 ~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhccCCCcCEEECCCC
Confidence 334444444444443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.1e-19 Score=178.38 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCc
Q 004686 585 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 585 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 647 (737)
..+++|+.|++++|++ +...+..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus 145 ~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 3444555555555542 2222222344555555555555555555555445555555555554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=5.8e-20 Score=183.24 Aligned_cols=180 Identities=19% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCccc
Q 004686 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 521 (737)
Q Consensus 442 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 521 (737)
+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 3344444444444443322 1 2344444555555554444333333344555555555555554444444455555555
Q ss_pred EEEccCccCcccCcc-cccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCC
Q 004686 522 ELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNL 600 (737)
Q Consensus 522 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 600 (737)
+|++++|.++.++.. +..+++|+.|++++|.... .....+.++++|++|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----------------------LPEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSC-
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCc-----------------------cCHHHhcCCccCCEEECCCCc-
Confidence 555555555544432 2344444444444443100 000113445556666666665
Q ss_pred CCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCCCCC
Q 004686 601 LEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (737)
Q Consensus 601 ~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 653 (737)
+++..+..+..+++|+.|++++|.+. +.+++|+.|+++.|.....+|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 33344444555666666666666443 234455666666655554444
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2.2e-19 Score=175.42 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=136.2
Q ss_pred CCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCc-CCCCCC-CCCCCCCCcEEeccC-ccccccccc
Q 004686 389 PFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSC-NLIRTP-DFTGVPNLERLNLEG-CTRLLEVHQ 464 (737)
Q Consensus 389 ~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~~ 464 (737)
.++.+|. .+.+|++|++++|.++.++. .|..+++|++|++++|. +....+ .+..+++|++|++++ |.+....+.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3667777 34488888888888888876 57788888888888886 554444 367778888888877 555544446
Q ss_pred cccCccccceeccccccccccCccccCCCCCcc---EEEccCC-CCCcccCcccCCCCccc-EEEccCccCcccCccccc
Q 004686 465 SVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK---ILCLCGC-LKLEKLPQDLGEVECLE-ELDVGGTAIRQIPPSIVQ 539 (737)
Q Consensus 465 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~l~~~~~~ 539 (737)
.+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++.+|...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-- 175 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-- 175 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT--
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh--
Confidence 67777778888877776543 554 66666666 7777776 44443344466666676 7777666666555432
Q ss_pred CCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCC-CCCCeE
Q 004686 540 LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL-FSLEAI 618 (737)
Q Consensus 540 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L 618 (737)
+.. ++|++|++++|..+++..+..+..+ ++|+.|
T Consensus 176 --------------------------------------------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 176 --------------------------------------------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp --------------------------------------------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred --------------------------------------------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 122 4667777777732333334456667 778888
Q ss_pred eCCCCCCcccchhhhcCCCCCEEccccCc
Q 004686 619 DLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 619 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 647 (737)
++++|.++.+|.. .+++|+.|+++++.
T Consensus 211 ~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 211 DVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ECCCCccccCChh--HhccCceeeccCcc
Confidence 8888877777754 57777777777764
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=6.5e-19 Score=176.91 Aligned_cols=199 Identities=19% Similarity=0.089 Sum_probs=173.8
Q ss_pred hhcCCCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCC-C-CCCCCeeEEccCCccccccccccCCCCCcEEec
Q 004686 353 FSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNL 430 (737)
Q Consensus 353 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 430 (737)
++.+++++.++++++.++...+....+++.|++.++.+..++.. + .+++|++|++++|.++.++.. ..+++|++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 56788999999999998877666778899999999988877532 3 688999999999999988765 78999999999
Q ss_pred CCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc
Q 004686 431 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (737)
++|.+...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 99998877667889999999999999877666688999999999999999877666666788999999999999987655
Q ss_pred CcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 511 PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
+..+..+++|+.|++++|.++.+|..+..+.+|+.+++.+|.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 566788999999999999999999999999999999999987
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.5e-19 Score=177.55 Aligned_cols=204 Identities=19% Similarity=0.112 Sum_probs=106.1
Q ss_pred CCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
++|+.|++++|.+..++ .+..+++|++|++++|.+.. .+.+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 34444444444444432 24445555555555554433 23344555555555555544443334455555555555555
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCCCCCCCcC
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKI 558 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~ 558 (737)
|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|.....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 196 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-- 196 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc--
Confidence 554443344445555566666655555444444455556666666666655544433 34556666666655541100
Q ss_pred ccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcCC
Q 004686 559 LSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLL 636 (737)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l~ 636 (737)
....+..+++|+.|++++|++ . +.+++|+.|++..|.++ .+|.+++.++
T Consensus 197 ---------------------~~~~~~~l~~L~~L~l~~N~~-~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 ---------------------PDGVFDRLTSLQYIWLHDNPW-D-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ---------------------CTTTTTTCTTCCEEECCSSCB-C-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ---------------------CHHHHhCCcCCCEEEccCCCc-c-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 001245566777777777662 2 23556777777777666 5665555443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=180.81 Aligned_cols=225 Identities=18% Similarity=0.136 Sum_probs=171.8
Q ss_pred CCCCCeeEEccCCcccc--ccc--cccCCCCCcEEecCCCcCCCCCCC-C--CCCCCCcEEeccCcccccccc----ccc
Q 004686 398 RPEKLFKLNLCNSRIKY--LWK--GIKPLKELKFMNLSHSCNLIRTPD-F--TGVPNLERLNLEGCTRLLEVH----QSV 466 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~----~~~ 466 (737)
....++.+.+.++.+.. +.. .+..+++|++|++++|.+....+. + ..+++|++|++++|.+.+..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44467788888877652 111 123456799999999988876664 4 789999999999988776443 344
Q ss_pred cCccccceeccccccccccCccccCCCCCccEEEccCCCCCcc--c--CcccCCCCcccEEEccCccCcccCcc----cc
Q 004686 467 GTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--L--PQDLGEVECLEELDVGGTAIRQIPPS----IV 538 (737)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~l~~~----~~ 538 (737)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..++.+++|++|++++|.++.++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 5789999999999988777778889999999999999987652 2 23347889999999999999866552 46
Q ss_pred cCCCCcEEEccCCCCCC--CcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCC
Q 004686 539 QLVNLKIFSLHGCKGQP--PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (737)
Q Consensus 539 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 616 (737)
.+++|++|++++|.... |. .+..+..+++|++|++++|.+. .+|..+. ++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~----------------------~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~ 275 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNP----------------------SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLR 275 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCS----------------------CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCS
T ss_pred cCCCCCEEECCCCCCCccchh----------------------hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCC
Confidence 78999999999987221 21 1122334579999999999954 4777664 7999
Q ss_pred eEeCCCCCCcccchhhhcCCCCCEEccccCccC
Q 004686 617 AIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (737)
Q Consensus 617 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 649 (737)
.|++++|.++.+|. +..+++|+.|++++|+..
T Consensus 276 ~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 276 VLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred EEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 99999999998774 788999999999999854
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3.4e-20 Score=191.75 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=163.5
Q ss_pred CCeeEEccCCccccccccccCC--CCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccccc-ccccccCccccceecc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPL--KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE-VHQSVGTLKRLILLNL 477 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 477 (737)
.+++++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4677888877766 3445555 788888888888777777777788899999988876544 6677888888999999
Q ss_pred ccccccccCccccCCCCCccEEEccCC-CCCc-ccCcccCCCCcccEEEccCc-cCcc--cCcccccCC-CCcEEEccCC
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGC-LKLE-KLPQDLGEVECLEELDVGGT-AIRQ--IPPSIVQLV-NLKIFSLHGC 551 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~--l~~~~~~l~-~L~~L~l~~~ 551 (737)
++|.+.+..+..+..+++|++|++++| .+.+ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 888776677777888888999999888 4443 35666778888899999888 7773 666777888 8888888887
Q ss_pred CCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCC-Cc-ccc
Q 004686 552 KGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN-FF-SLP 629 (737)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~-~lp 629 (737)
...+.. ..+ ...+..+++|++|++++|..+++..+..+..+++|++|++++|. ++ ...
T Consensus 206 ~~~~~~----~~l----------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 206 RKNLQK----SDL----------------STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp GGGSCH----HHH----------------HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred cccCCH----HHH----------------HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 411100 000 01134577888888888885555666677888888888888884 32 111
Q ss_pred hhhhcCCCCCEEccccC
Q 004686 630 SSINQLLKLKILCLEKC 646 (737)
Q Consensus 630 ~~l~~l~~L~~L~l~~n 646 (737)
..+..+++|+.|++++|
T Consensus 266 ~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTS
T ss_pred HHHhcCCCCCEEeccCc
Confidence 25677888888888888
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=8.8e-21 Score=212.53 Aligned_cols=194 Identities=13% Similarity=0.019 Sum_probs=117.1
Q ss_pred hcCCCCceEEEcccccCCCcccc----ccC-cceeeeecCCCCC---CCCCC-CCCCCeeEEccCCcccc-----ccccc
Q 004686 354 STMSNLRLLEINNLYSSGNLEYL----SNN-LRYLKWHEYPFNS---LPVSF-RPEKLFKLNLCNSRIKY-----LWKGI 419 (737)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~~~~~~~~---l~~~~-~~~~L~~L~l~~~~i~~-----l~~~~ 419 (737)
..+++|++|+++++.+++..+.. ++. |++|++.++.... ++... .+++|++|++++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 36778888888887766543322 223 7777777654110 11111 35678888888887653 22334
Q ss_pred cCCCCCcEEecCCCcCCCCCC-----CCCCCCCCcEEeccCccccccccccccCccccceecccccccc---ccCccccC
Q 004686 420 KPLKELKFMNLSHSCNLIRTP-----DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL---VSFPKNVC 491 (737)
Q Consensus 420 ~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~ 491 (737)
..+++|++|++++|.+..... .+.++++|++|++++|...+ ++..+..+++|++|+++.+... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 567788888888776652221 13457788888888866543 5566777777777777643222 22334556
Q ss_pred CCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc--ccCcccccCCCCcEEEcc
Q 004686 492 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLH 549 (737)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~ 549 (737)
.+++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|+.|++.
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 6677777777663 23445666666777777777777654 222334566777777766
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.3e-20 Score=209.06 Aligned_cols=341 Identities=14% Similarity=0.010 Sum_probs=204.9
Q ss_pred eEEEEEecCCcc-cccCh-hhhhcCCCCceEEEcccccCCC-------ccccccCcceeeeecCCCCCCCCC-C-----C
Q 004686 334 AVEAIIVDVPEM-TELEA-KSFSTMSNLRLLEINNLYSSGN-------LEYLSNNLRYLKWHEYPFNSLPVS-F-----R 398 (737)
Q Consensus 334 ~~~~l~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~~~~~~~~l~~~-~-----~ 398 (737)
.++.+.+..+.. ..... .....+++|++|++++|.+++. ++..+++|++|++.++.+..+... + .
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 467777766542 11111 2235889999999999988765 234456788887777766533321 1 4
Q ss_pred CCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCC----CCCCCCCCCCcEEeccCccccccccccccCccccce
Q 004686 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL 474 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 474 (737)
+++|++|++++|.+..++..+..+++|+.|+++.+..... ...+..+++|+.|+++++ ....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 6899999999999998888888999999999985433211 123667888999999874 34566777888999999
Q ss_pred ecccccccccc-CccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccC-----------ccCc--ccCcccccC
Q 004686 475 LNLKDCRNLVS-FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-----------TAIR--QIPPSIVQL 540 (737)
Q Consensus 475 L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~--~l~~~~~~l 540 (737)
|++++|.+... ++..+..+++|++|+++++.....++.....+++|++|++++ +.++ .++.....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 99999875432 234467889999999984433334444456788899999983 4555 333444568
Q ss_pred CCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCC-CCCCCcEEecc----CCCCCCCC-----cccccc
Q 004686 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFT-GLSSLQTLDLS----DCNLLEGA-----IPSDIG 610 (737)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~~-----~~~~l~ 610 (737)
++|++|++..+..... .+..+. .+++|++|+++ .|. +++. ++..+.
T Consensus 378 ~~L~~L~l~~~~l~~~-----------------------~~~~l~~~~~~L~~L~l~~~~~~n~-l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 378 QELEYMAVYVSDITNE-----------------------SLESIGTYLKNLCDFRLVLLDREER-ITDLPLDNGVRSLLI 433 (592)
T ss_dssp TTCSEEEEEESCCCHH-----------------------HHHHHHHHCCSCCEEEEEECSCCSC-CSSCCCHHHHHHHHH
T ss_pred ccCeEEEeecCCccHH-----------------------HHHHHHhhCCCCcEEEEeecCCCcc-ccCchHHHHHHHHHH
Confidence 8999998855431110 001111 25566666665 233 3321 223344
Q ss_pred CCCCCCeEeCCCCC--Cc-ccchhh-hcCCCCCEEccccCccCC-CCCCCCCccceeecccccccccccccccccCCCC-
Q 004686 611 SLFSLEAIDLSGNN--FF-SLPSSI-NQLLKLKILCLEKCRNLK-SLPELPPEIVFVGAEDCTSLETISAFAKLSRSPN- 684 (737)
Q Consensus 611 ~~~~L~~L~l~~n~--l~-~lp~~l-~~l~~L~~L~l~~n~~~~-~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~- 684 (737)
++++|++|++++|. ++ ..+..+ ..+++|+.|++++|.... .++. .+.+|++|+.|++.+|. +...
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME--------FSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH--------HHTCCTTCCEEEEESCC-CBHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH--------HHhcCcccCeeeccCCC-CcHHH
Confidence 56667777765543 33 222222 336667777776665332 1111 11334444444444432 1111
Q ss_pred ceEEEecCCCccccccccchHHHH
Q 004686 685 IALNFLNCFKLVEDQVSKDNLAVT 708 (737)
Q Consensus 685 ~~~~~~~~~~L~~L~l~~n~~~~~ 708 (737)
.+..+..|++|++|++++|.++..
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 122334566677777766665443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.2e-18 Score=172.12 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred ccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcE
Q 004686 466 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKI 545 (737)
Q Consensus 466 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 545 (737)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|+.
T Consensus 81 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 444444444444444322 222 24445555555555554433 22 24555555555555555555543 555556666
Q ss_pred EEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCC
Q 004686 546 FSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNF 625 (737)
Q Consensus 546 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 625 (737)
|++++|.... ++.+..+++|+.|++++|.+.. ++. +..+++|++|++++|.+
T Consensus 156 L~l~~n~l~~-------------------------~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 156 LSIGNAQVSD-------------------------LTPLANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCC-------------------------CGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCC
T ss_pred EEccCCcCCC-------------------------ChhhcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCcc
Confidence 6665554110 1114455666666666666322 332 56667777777777777
Q ss_pred cccchhhhcCCCCCEEccccCcc
Q 004686 626 FSLPSSINQLLKLKILCLEKCRN 648 (737)
Q Consensus 626 ~~lp~~l~~l~~L~~L~l~~n~~ 648 (737)
+.++ .+..+++|+.|++++|+.
T Consensus 208 ~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 208 SDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CBCG-GGTTCTTCCEEEEEEEEE
T ss_pred Cccc-cccCCCCCCEEEccCCee
Confidence 6665 366677777777777764
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=6.9e-18 Score=171.23 Aligned_cols=197 Identities=16% Similarity=0.236 Sum_probs=165.5
Q ss_pred CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecc
Q 004686 398 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (737)
.+++|++|++++|.+..++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 4679999999999999987 68899999999999998876665 8899999999999988554 33 6889999999999
Q ss_pred ccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCc
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPK 557 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 557 (737)
++|.+.+ ++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-- 187 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-- 187 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc--
Confidence 9987654 554 8899999999999998765433 8899999999999999998877 8899999999999987321
Q ss_pred CccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchh
Q 004686 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS 631 (737)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~ 631 (737)
++.+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++..|..
T Consensus 188 -----------------------~~~l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 188 -----------------------ISPLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -----------------------CGGGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred -----------------------ChhhcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecCCee
Confidence 1225678999999999999543 44 378999999999999999877653
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2.7e-18 Score=167.67 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=118.5
Q ss_pred CCcEEeccCccccccccccccCccccceecccccc-ccccCccccCCCCCccEEEccC-CCCCcccCcccCCCCcccEEE
Q 004686 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR-NLVSFPKNVCLMKSLKILCLCG-CLKLEKLPQDLGEVECLEELD 524 (737)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 524 (737)
+|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++ |.+.+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555554443333445555555555555554 2222223455556666666665 444443344556666666666
Q ss_pred ccCccCcccCcccccCCCCc---EEEccCC-CCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCc-EEeccCCC
Q 004686 525 VGGTAIRQIPPSIVQLVNLK---IFSLHGC-KGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCN 599 (737)
Q Consensus 525 l~~~~~~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 599 (737)
+++|.++.+|. +..+++|+ .|++++| .... .....+.++++|+ +|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~-----------------------i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS-----------------------IPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE-----------------------ECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhh-----------------------cCcccccchhcceeEEEcCCCC
Confidence 66666666665 55566665 7777666 3110 1112366788999 99999998
Q ss_pred CCCCCccccccCCCCCCeEeCCCCC-Ccccch-hhhcC-CCCCEEccccCccCCCCCC-CCCccceeeccccc
Q 004686 600 LLEGAIPSDIGSLFSLEAIDLSGNN-FFSLPS-SINQL-LKLKILCLEKCRNLKSLPE-LPPEIVFVGAEDCT 668 (737)
Q Consensus 600 ~~~~~~~~~l~~~~~L~~L~l~~n~-l~~lp~-~l~~l-~~L~~L~l~~n~~~~~~~~-l~~~L~~l~l~~c~ 668 (737)
+. .+|......++|+.|++++|. ++.+|. .+..+ ++|+.|++++|+... +|. ..+.|+.|.++++.
T Consensus 168 l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCTTCTTCSEEECTTC-
T ss_pred Cc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChhHhccCceeeccCcc
Confidence 54 366544444899999999994 997764 57888 999999999998653 442 23455555555443
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.3e-17 Score=170.94 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=176.3
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC--CCCCCCCCcE-EeccCc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLER-LNLEGC 456 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~-L~l~~~ 456 (737)
+.++..++.++.+|..+ +.++++|+|++|.|+.+|. .|.++++|++|+|++|.+...++ .|.++++|++ +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45667777888888876 4689999999999999986 48999999999999998866544 3778888776 455556
Q ss_pred cccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccC-cccCCC-CcccEEEccCccCcccC
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP-QDLGEV-ECLEELDVGGTAIRQIP 534 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~~~~l~ 534 (737)
.+....|..+..+++|++|++++|.+....+..+....++..|++.++.....++ ..+..+ ..++.|++++|.++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 6655567889999999999999988765555556667778889987765555454 345555 46899999999999998
Q ss_pred cccccCCCCcEEEccCCC--CCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCC
Q 004686 535 PSIVQLVNLKIFSLHGCK--GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL 612 (737)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 612 (737)
.......+|+.+.+.++. ..+| ...+.++++|++|++++|++.. +|. ..+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~------------------------~~~f~~l~~L~~LdLs~N~l~~--lp~--~~~ 222 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELP------------------------NDVFHGASGPVILDISRTRIHS--LPS--YGL 222 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCC------------------------TTTTTTEECCSEEECTTSCCCC--CCS--SSC
T ss_pred hhhccccchhHHhhccCCcccCCC------------------------HHHhccCcccchhhcCCCCcCc--cCh--hhh
Confidence 877777788888887543 2222 1236778888888888888543 554 235
Q ss_pred CCCCeEeCCCC-CCcccchhhhcCCCCCEEccccCc
Q 004686 613 FSLEAIDLSGN-NFFSLPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 613 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~ 647 (737)
.+|+.|.+.++ ++..+| .+.++++|+.+++.++.
T Consensus 223 ~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 66777766554 566777 57888888888887644
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2.4e-19 Score=188.97 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=172.6
Q ss_pred CCCCCeeEEccCCcccc-----ccccccCCCCCcEEecCCCcCCCC---CC-C-------CCCCCCCcEEeccCccccc-
Q 004686 398 RPEKLFKLNLCNSRIKY-----LWKGIKPLKELKFMNLSHSCNLIR---TP-D-------FTGVPNLERLNLEGCTRLL- 460 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~---~~-~-------~~~~~~L~~L~l~~~~~~~- 460 (737)
.+++|++|++++|.+.. ++..+..+++|++|++++|.+... .| . +..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 35689999999998874 445577899999999998754422 22 1 3678999999999988765
Q ss_pred ---cccccccCccccceecccccccccc----CccccCCC---------CCccEEEccCCCCC-cccC---cccCCCCcc
Q 004686 461 ---EVHQSVGTLKRLILLNLKDCRNLVS----FPKNVCLM---------KSLKILCLCGCLKL-EKLP---QDLGEVECL 520 (737)
Q Consensus 461 ---~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~l~~l~~L 520 (737)
.++..+..+++|++|++++|.+... ++..+..+ ++|++|++++|.+. ..++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 4667788899999999999887533 23333344 89999999999886 3444 456778899
Q ss_pred cEEEccCccCc------ccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEe
Q 004686 521 EELDVGGTAIR------QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLD 594 (737)
Q Consensus 521 ~~L~l~~~~~~------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 594 (737)
++|++++|.++ -++..+..+++|+.|++++|...... .. .-...+..+++|++|+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~----------------~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SS----------------ALAIALKSWPNLRELG 250 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HH----------------HHHHHGGGCTTCCEEE
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HH----------------HHHHHHccCCCcCEEE
Confidence 99999999887 23337788999999999988621000 00 0001255678899999
Q ss_pred ccCCCCCCCC----ccccc--cCCCCCCeEeCCCCCCcc-----cchhh-hcCCCCCEEccccCccCCCC
Q 004686 595 LSDCNLLEGA----IPSDI--GSLFSLEAIDLSGNNFFS-----LPSSI-NQLLKLKILCLEKCRNLKSL 652 (737)
Q Consensus 595 l~~~~~~~~~----~~~~l--~~~~~L~~L~l~~n~l~~-----lp~~l-~~l~~L~~L~l~~n~~~~~~ 652 (737)
+++|.+ ++. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|+.....
T Consensus 251 L~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999984 333 45555 348999999999999986 88777 66899999999999866543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=4.7e-19 Score=183.15 Aligned_cols=229 Identities=18% Similarity=0.184 Sum_probs=147.7
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCC-CC-CCCCCCCCcEEeccCccccccccccccCccccceeccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (737)
++++|++++|.+...+..+..+++|++|++++|.+... .+ .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 56666666666666555566677777777777765432 22 25667777777777776655666667777788888887
Q ss_pred ccc-ccc-cCccccCCCCCccEEEccCC-CCCcc-cCcccCCCC-cccEEEccCcc--Cc--ccCcccccCCCCcEEEcc
Q 004686 479 DCR-NLV-SFPKNVCLMKSLKILCLCGC-LKLEK-LPQDLGEVE-CLEELDVGGTA--IR--QIPPSIVQLVNLKIFSLH 549 (737)
Q Consensus 479 ~n~-~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~--~l~~~~~~l~~L~~L~l~ 549 (737)
+|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. ++ .++..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 773 333 25555677778888888887 55543 456667777 88888888874 43 566666778888888888
Q ss_pred CCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccc
Q 004686 550 GCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP 629 (737)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp 629 (737)
+|..... .....+..+++|++|++++|..........+..+++|+.|++++| ++.-
T Consensus 231 ~~~~l~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~- 286 (336)
T 2ast_B 231 DSVMLKN----------------------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG- 286 (336)
T ss_dssp TCTTCCG----------------------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT-
T ss_pred CCCcCCH----------------------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH-
Confidence 7752111 112235567888888888885333333335677888999999888 4411
Q ss_pred hhhhcC-CCCCEEccccCccCCCCCC
Q 004686 630 SSINQL-LKLKILCLEKCRNLKSLPE 654 (737)
Q Consensus 630 ~~l~~l-~~L~~L~l~~n~~~~~~~~ 654 (737)
.+..+ .+|+.|++++|...+..|.
T Consensus 287 -~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 287 -TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp -CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred -HHHHHHhhCcceEEecccCccccCC
Confidence 12222 2345555778776665554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=5.3e-17 Score=159.66 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=63.0
Q ss_pred CeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 402 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
.++++++++.++.+|..+. ++|+.|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555555554433 3555555555555444432 445555555555555444444444455555555555554
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccC
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP 534 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 534 (737)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 443333333444455555555554444333333444455555555555444443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.8e-19 Score=189.96 Aligned_cols=230 Identities=14% Similarity=0.066 Sum_probs=161.5
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCC-----CCCCCCCCcEEeccCccc---ccccccc-------
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-----DFTGVPNLERLNLEGCTR---LLEVHQS------- 465 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~---~~~~~~~------- 465 (737)
.|+...+....+..++..+..+++|+.|++++|.+....+ .+..+++|++|++++|.. .+.+|..
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444445555666777788889999999999997765422 366789999999998632 2334433
Q ss_pred ccCccccceeccccccccc----cCccccCCCCCccEEEccCCCCCcccC----cccCCC---------CcccEEEccCc
Q 004686 466 VGTLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEKLP----QDLGEV---------ECLEELDVGGT 528 (737)
Q Consensus 466 ~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l---------~~L~~L~l~~~ 528 (737)
+..+++|++|++++|.+.. .+|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3678999999999988765 466777888999999999988754333 233334 78999999998
Q ss_pred cCc--ccC---cccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCC-CCCCCCCCcEEeccCCCCCC
Q 004686 529 AIR--QIP---PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLE 602 (737)
Q Consensus 529 ~~~--~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 602 (737)
.++ .++ ..+..+++|+.|++++|...... .. ...+ .+..+++|+.|++++|.+..
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g------~~-------------~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG------IE-------------HLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH------HH-------------HHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH------HH-------------HHHHHHhhcCCCccEEECcCCCCCc
Confidence 886 444 45667888899988887622000 00 0011 35677888888888888421
Q ss_pred ---CCccccccCCCCCCeEeCCCCCCcc-----cchhhhc--CCCCCEEccccCccC
Q 004686 603 ---GAIPSDIGSLFSLEAIDLSGNNFFS-----LPSSINQ--LLKLKILCLEKCRNL 649 (737)
Q Consensus 603 ---~~~~~~l~~~~~L~~L~l~~n~l~~-----lp~~l~~--l~~L~~L~l~~n~~~ 649 (737)
..+|..+..+++|++|+|++|.++. ++..+.. +++|++|+|++|...
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 3467777888888888888888873 3556644 888888888888744
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=8e-17 Score=158.40 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=145.7
Q ss_pred CcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCc
Q 004686 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 456 (737)
..+.+++.++.+..+|..++ .++++|++++|.+..++. .+..+++|++|++++|.+....+. +..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34567777777888887765 589999999999998765 588999999999999988877665 788999999999998
Q ss_pred cccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP- 535 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~- 535 (737)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 8776666778999999999999988765555567889999999999998876666678899999999999999997775
Q ss_pred ccccCCCCcEEEccCCC
Q 004686 536 SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 536 ~~~~l~~L~~L~l~~~~ 552 (737)
.+..+++|+.|++++|.
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 57789999999999987
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=6.1e-20 Score=205.80 Aligned_cols=341 Identities=14% Similarity=0.074 Sum_probs=170.2
Q ss_pred hcCCCCceEEEcccccCCCccc----cccCcceeeeecCC-CCC--CCCCC-CCCCCeeEEccCCcccc-----cccccc
Q 004686 354 STMSNLRLLEINNLYSSGNLEY----LSNNLRYLKWHEYP-FNS--LPVSF-RPEKLFKLNLCNSRIKY-----LWKGIK 420 (737)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~~~~~-~~~--l~~~~-~~~~L~~L~l~~~~i~~-----l~~~~~ 420 (737)
..+++|++|+++++.+++..+. .+++|+.|++.++. +.. ++... .+++|++|++++|.++. ++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3455555555555554432221 23455555555441 111 11111 34566666666665442 222233
Q ss_pred CCCCCcEEecCCCcCCCCC-CC----CCCCCCCcEEeccCccccccccccccCccccceeccccccc-------------
Q 004686 421 PLKELKFMNLSHSCNLIRT-PD----FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN------------- 482 (737)
Q Consensus 421 ~l~~L~~L~l~~~~~~~~~-~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~------------- 482 (737)
.+++|+.|++++|. .... .. +..+++|++|++++|...+.++..+..+++|++|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 45566666666554 1010 00 12346666666666543333445555555566655433211
Q ss_pred -----------------cccCccccCCCCCccEEEccCCCCCcc-cCcccCCCCcccEEEccCccCc--ccCcccccCCC
Q 004686 483 -----------------LVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVN 542 (737)
Q Consensus 483 -----------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~--~l~~~~~~l~~ 542 (737)
...++..+..+++|++|++++|.+... +...+..+++|++|++++| ++ .++.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 112333333455666666666553322 1222445566666666655 32 22222234566
Q ss_pred CcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCC-CCCCCCcEEeccCCCCCCCCccccc-cCCCCCCeEeC
Q 004686 543 LKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRF-TGLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDL 620 (737)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l 620 (737)
|+.|++.++.... ....+.... ..+..+ .++++|++|.+..+. +++..+..+ ..+++|+.|++
T Consensus 340 L~~L~L~~~~~~g-------------~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 340 LRELRVFPSEPFV-------------MEPNVALTE-QGLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp CCEEEEECSCTTC-------------SSCSSCCCH-HHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEE
T ss_pred CCEEEEecCcccc-------------cccCCCCCH-HHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEe
Confidence 6666664432000 000000000 111112 247899999887777 443333334 35889999999
Q ss_pred C--C----CCCcccc------hhhhcCCCCCEEccccCccCC-CCCC---CCCccceeeccc--------------cccc
Q 004686 621 S--G----NNFFSLP------SSINQLLKLKILCLEKCRNLK-SLPE---LPPEIVFVGAED--------------CTSL 670 (737)
Q Consensus 621 ~--~----n~l~~lp------~~l~~l~~L~~L~l~~n~~~~-~~~~---l~~~L~~l~l~~--------------c~~L 670 (737)
+ + +.++..| ..+..+++|+.|+++++ ... .++. ..+.|+.|++++ |++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 8 3 4565333 23577889999999762 111 1111 135677776643 5777
Q ss_pred ccccccccccCCCCc-eEEEecCCCccccccccchHHHHHHHHH
Q 004686 671 ETISAFAKLSRSPNI-ALNFLNCFKLVEDQVSKDNLAVTLMKQW 713 (737)
Q Consensus 671 ~~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 713 (737)
+.|++.+|.. .... ......|++|+.|++++|.++......+
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 7877776632 2221 2234568888888888888855554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=8.9e-17 Score=166.48 Aligned_cols=224 Identities=20% Similarity=0.130 Sum_probs=160.6
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcccccccc-ccccCcccccee-cccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILL-NLKD 479 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L-~l~~ 479 (737)
++++.++++++++|..+. ++++.|+|++|.+...++. |.++++|++|++++|.+.+.+| ..|.++++|+++ .+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 578888999999998763 6899999999988877664 8889999999999988777665 567888887764 4445
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccC-ccCcccCcc-cccC-CCCcEEEccCCCC-CC
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPPS-IVQL-VNLKIFSLHGCKG-QP 555 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~-~~~l-~~L~~L~l~~~~~-~~ 555 (737)
|.+....|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..++.. +..+ ..++.|++++|.. .+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 555555567788889999999998887665555555666777888855 567766643 3333 4678888887762 11
Q ss_pred CcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcC
Q 004686 556 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (737)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l 635 (737)
+ +.....++|++|++++++.++...+..+..+++|+.|++++|.++.+|. ..+
T Consensus 170 ~-------------------------~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~ 222 (350)
T 4ay9_X 170 H-------------------------NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGL 222 (350)
T ss_dssp C-------------------------TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSC
T ss_pred C-------------------------hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhh
Confidence 1 1123446788888876553443333456788888888888888888875 346
Q ss_pred CCCCEEccccCccCCCCCCC
Q 004686 636 LKLKILCLEKCRNLKSLPEL 655 (737)
Q Consensus 636 ~~L~~L~l~~n~~~~~~~~l 655 (737)
.+|+.|.+.+|..++.+|.+
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCT
T ss_pred ccchHhhhccCCCcCcCCCc
Confidence 77778877777777777643
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=3.1e-18 Score=178.44 Aligned_cols=230 Identities=15% Similarity=0.098 Sum_probs=147.3
Q ss_pred CCCeeEEccCCcccccc-----ccccCCC-CCcEEecCCCcCCCCCCC-CCC-----CCCCcEEeccCcccccccccc--
Q 004686 400 EKLFKLNLCNSRIKYLW-----KGIKPLK-ELKFMNLSHSCNLIRTPD-FTG-----VPNLERLNLEGCTRLLEVHQS-- 465 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~-----~~~L~~L~l~~~~~~~~~~~~-- 465 (737)
++|++|++++|.++..+ ..+..++ +|++|++++|.+....+. +.. +++|++|++++|.+....+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 45888888888887665 4567777 788888888877655432 333 278888888888766555443
Q ss_pred --ccCc-cccceeccccccccccCccc----cCC-CCCccEEEccCCCCCcc----cCcccCCCC-cccEEEccCccCcc
Q 004686 466 --VGTL-KRLILLNLKDCRNLVSFPKN----VCL-MKSLKILCLCGCLKLEK----LPQDLGEVE-CLEELDVGGTAIRQ 532 (737)
Q Consensus 466 --~~~l-~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~----~~~~l~~l~-~L~~L~l~~~~~~~ 532 (737)
+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+.+. ++..+..++ +|++|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3334 78888888888765544333 333 35888888888877642 333444554 88888888888874
Q ss_pred cCc-----ccccC-CCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccC-CCCCC-CCCCcEEeccCCCCCCCC
Q 004686 533 IPP-----SIVQL-VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTG-LSSLQTLDLSDCNLLEGA 604 (737)
Q Consensus 533 l~~-----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~ 604 (737)
... .+..+ ++|+.|++++|....... ..+ ..+.. .++|++|++++|.+ ++.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--------------------~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 240 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSY--------------------AELAYIFSSIPNHVVSLNLCLNCL-HGP 240 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--------------------HHHHHHHHHSCTTCCEEECCSSCC-CCC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--------------------HHHHHHHhcCCCCceEEECcCCCC-CcH
Confidence 432 33444 488888888876211000 000 01222 35788888888884 332
Q ss_pred c----cccccCCCCCCeEeCCCCCCcc--------cchhhhcCCCCCEEccccCccCC
Q 004686 605 I----PSDIGSLFSLEAIDLSGNNFFS--------LPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 605 ~----~~~l~~~~~L~~L~l~~n~l~~--------lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
. ...+..+++|+.|++++|.+.. ++..+..+++|+.|++++|+...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2 2345677888888888887442 23345677788888888887443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=163.28 Aligned_cols=195 Identities=16% Similarity=0.134 Sum_probs=149.9
Q ss_pred hcCCCCceEEEcccccCCCcccc-----ccCcceeeeecCCCCCCCCC------CCCCCCeeEEccCCcccccc-ccccC
Q 004686 354 STMSNLRLLEINNLYSSGNLEYL-----SNNLRYLKWHEYPFNSLPVS------FRPEKLFKLNLCNSRIKYLW-KGIKP 421 (737)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~~~~~~~~l~~~------~~~~~L~~L~l~~~~i~~l~-~~~~~ 421 (737)
..+++|++|++++|.+.+..|.. +.+++.|++.++.+...... ..+++|++|++++|.+..++ ..+..
T Consensus 88 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 88 LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 34567999999998888766644 45677777777776643221 14779999999999998776 56888
Q ss_pred CCCCcEEecCCCcCCCC---CC--CCCCCCCCcEEeccCccccccccc----cccCccccceeccccccccccCccccCC
Q 004686 422 LKELKFMNLSHSCNLIR---TP--DFTGVPNLERLNLEGCTRLLEVHQ----SVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (737)
Q Consensus 422 l~~L~~L~l~~~~~~~~---~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (737)
+++|++|++++|.+... .+ .+..+++|++|++++|.+. .++. .+..+++|++|++++|.+.+..|..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 99999999999986542 11 2467889999999998764 2232 3577899999999999887776776766
Q ss_pred C---CCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCC
Q 004686 493 M---KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG 553 (737)
Q Consensus 493 l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 553 (737)
+ ++|++|++++|.+. .+|..+. ++|++|++++|.++.+|. +..+++|+.|++++|..
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 6 69999999998877 6677664 799999999999998866 67889999999998873
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.2e-18 Score=178.33 Aligned_cols=223 Identities=14% Similarity=0.122 Sum_probs=152.2
Q ss_pred eEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCCC-----CCCCCC-CCcEEeccCccccccccccccCc-----cc
Q 004686 404 KLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTP-----DFTGVP-NLERLNLEGCTRLLEVHQSVGTL-----KR 471 (737)
Q Consensus 404 ~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 471 (737)
++++++|.++...+. +...++|++|++++|.+....+ .+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467788888855444 4555569999999998776654 266777 89999999998776666566554 89
Q ss_pred cceeccccccccccCccc----cCCC-CCccEEEccCCCCCcccCcc----cCC-CCcccEEEccCccCc-----ccCcc
Q 004686 472 LILLNLKDCRNLVSFPKN----VCLM-KSLKILCLCGCLKLEKLPQD----LGE-VECLEELDVGGTAIR-----QIPPS 536 (737)
Q Consensus 472 L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~-----~l~~~ 536 (737)
|++|++++|.+....+.. +..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999998876655543 3344 78999999998876654433 333 358999999999887 34445
Q ss_pred cccCC-CCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccC-CCCCCC-CCCcEEeccCCCCCCCC----ccccc
Q 004686 537 IVQLV-NLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTGL-SSLQTLDLSDCNLLEGA----IPSDI 609 (737)
Q Consensus 537 ~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~----~~~~l 609 (737)
+..++ +|++|++++|....... ..+ ..+..+ ++|++|++++|.+ ++. ++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~--------------------~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~~~l 220 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNC--------------------AELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIF 220 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCH--------------------HHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhH--------------------HHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHHHHH
Confidence 55555 88888888876211100 000 012334 4888888888884 321 34444
Q ss_pred cC-CCCCCeEeCCCCCCcccch-----hhhcCCCCCEEccccCc
Q 004686 610 GS-LFSLEAIDLSGNNFFSLPS-----SINQLLKLKILCLEKCR 647 (737)
Q Consensus 610 ~~-~~~L~~L~l~~n~l~~lp~-----~l~~l~~L~~L~l~~n~ 647 (737)
.. .++|++|++++|.++..+. .+..+++|++|++++|.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 44 4588888888888875432 34677888888888887
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.8e-19 Score=200.46 Aligned_cols=318 Identities=14% Similarity=0.045 Sum_probs=160.7
Q ss_pred ceEEEEEecCC-cccccCh-hhhhcCCCCceEEEcccccCCCccc-------cccCcceeeeecCCCCCCCCC-C-----
Q 004686 333 DAVEAIIVDVP-EMTELEA-KSFSTMSNLRLLEINNLYSSGNLEY-------LSNNLRYLKWHEYPFNSLPVS-F----- 397 (737)
Q Consensus 333 ~~~~~l~l~~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~l~~L~~~~~~~~~l~~~-~----- 397 (737)
..++.+.+..+ ....... ..+..+++|++|++++|.+++..+. .+++|+.|++.++. ..+... +
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHH
Confidence 46677777665 3322222 2334788888888888776653322 33466666666554 222211 1
Q ss_pred CCCCCeeEEccCC-ccccccccccCCCCCcEEecCCCcCC-------CCCCCCC------------------------CC
Q 004686 398 RPEKLFKLNLCNS-RIKYLWKGIKPLKELKFMNLSHSCNL-------IRTPDFT------------------------GV 445 (737)
Q Consensus 398 ~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~-------~~~~~~~------------------------~~ 445 (737)
.+++|++|++++| .+..++..+..+++|+.|+++.+... ...+.+. .+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 3478888888877 55566666677777777776554210 0000122 24
Q ss_pred CCCcEEeccCcccccc-ccccccCccccceeccccccccccCccccCCCCCccEEEccCC---------CCCcccCccc-
Q 004686 446 PNLERLNLEGCTRLLE-VHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC---------LKLEKLPQDL- 514 (737)
Q Consensus 446 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~---------~~~~~~~~~l- 514 (737)
++|++|++++|.+... ++..+..+++|++|++++|.....++.....+++|++|++.+| .+.+.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 4555555555542221 1122344555555555554111112222223455555555221 1111111111
Q ss_pred CCCCcccEEEccCccCcc-cCcccc-cCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCc---cccCCC-CCCCC
Q 004686 515 GEVECLEELDVGGTAIRQ-IPPSIV-QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM---CLSFPR-FTGLS 588 (737)
Q Consensus 515 ~~l~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 588 (737)
..+++|+.|.++.+.++. .+..+. .+++|+.|+++.+... ..+.... ...+.. +.+++
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~----------------~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK----------------APDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT----------------CCCTTTCCCTHHHHHHHHHHCT
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC----------------CcccccCCchhhHHHHHHhhCC
Confidence 124555555555555441 111222 3556666665511100 0000000 000111 45678
Q ss_pred CCcEEeccCCCCCCCCccccccC-CCCCCeEeCCCCCCcc-cchhh-hcCCCCCEEccccCccCCCCC----CCCCccce
Q 004686 589 SLQTLDLSDCNLLEGAIPSDIGS-LFSLEAIDLSGNNFFS-LPSSI-NQLLKLKILCLEKCRNLKSLP----ELPPEIVF 661 (737)
Q Consensus 589 ~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~l~~-lp~~l-~~l~~L~~L~l~~n~~~~~~~----~l~~~L~~ 661 (737)
+|+.|++++ . +++..+..+.. +++|+.|++++|.++. .+..+ ..+++|++|+|++|+...... .-.++|+.
T Consensus 433 ~L~~L~L~~-~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 433 DLRRLSLSG-L-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TCCEEECCS-S-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CccEEeecC-c-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 999999977 4 44334444443 8899999999999872 22233 779999999999998632111 11145555
Q ss_pred eecccccc
Q 004686 662 VGAEDCTS 669 (737)
Q Consensus 662 l~l~~c~~ 669 (737)
|++++|+.
T Consensus 511 L~l~~~~~ 518 (594)
T 2p1m_B 511 LWMSSCSV 518 (594)
T ss_dssp EEEESSCC
T ss_pred EeeeCCCC
Confidence 55555543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=4.8e-16 Score=169.13 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=98.7
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
++++|++++|.++.+|..+ +++|++|++++|.+...+ ..+++|++|++++|.+.+ +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 4555555555555555443 245555555555544222 334555555555554433 343 332 5555555555
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCC-CCCcCc
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG-QPPKIL 559 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~ 559 (737)
.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.++.+|. +. ++|+.|++++|.. .+|. +
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence 4433 443 45556666666655443 443 34556666666666665555 33 5566666655541 1110 0
Q ss_pred cchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCc-ccchhhhcC
Q 004686 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQL 635 (737)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~l 635 (737)
.. .-....+.|+.|++++|.+.. +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 199 ~~--------------------~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 199 PV--------------------RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C----------------------------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH--------------------hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 00 000112334777777777543 6666666777777777777776 555555443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5.3e-16 Score=168.76 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=146.5
Q ss_pred CCCceEEEcccccCCCccccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCC
Q 004686 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (737)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~ 436 (737)
.+|+.|++++|.+++..+..+.+++.|++.+|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++|.+.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 38999999999988754446788999999999999888 346899999999999999888 655 9999999999887
Q ss_pred CCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCC
Q 004686 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (737)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 516 (737)
..+. .+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.+. .+|. +..
T Consensus 134 ~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~ 200 (571)
T 3cvr_A 134 MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV 200 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-
T ss_pred CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH
Confidence 7444 68899999999988654 555 67899999999987655 777 55 89999999999876 6666 554
Q ss_pred CCcc-------cEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 517 VECL-------EELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 517 l~~L-------~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
+| +.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 67 99999999999999999899999999999987
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.1e-16 Score=147.92 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=83.3
Q ss_pred eEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccccccc
Q 004686 404 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (737)
Q Consensus 404 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (737)
.++++++.++.+|..+ .++|++|++++|.+...++. +..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4455555555555443 24566666666655544443 45566666666666554433334456666666666666655
Q ss_pred cccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCC
Q 004686 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGC 551 (737)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 551 (737)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 443334456666666666666666554444566667777777777766655543 344555555555544
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.4e-16 Score=147.54 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=121.1
Q ss_pred CCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccc
Q 004686 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (737)
+++|++|++++|.+..++ .+..+++|++|++++|.+ ...+.+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 457778888888888777 678888888888888843 344567788889999998888777677788888999999999
Q ss_pred cccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
+|.+.+..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 888777777778888999999999987555565 5888899999999999988877 67888999999998876
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.4e-15 Score=152.69 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=124.6
Q ss_pred cceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccc
Q 004686 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRL 459 (737)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 459 (737)
++.|++.++.+..++....+++|++|++++|.++.++. +..+++|++|++++|.+.. .+.+..+++|++|++++|.+.
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSCCC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCcCC
Confidence 33333333444444444456788888888888888776 8888889999998887654 445788888999999888765
Q ss_pred ccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccccc
Q 004686 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQ 539 (737)
Q Consensus 460 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~ 539 (737)
. + ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..
T Consensus 126 ~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~ 198 (291)
T 1h6t_A 126 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAG 198 (291)
T ss_dssp C-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTT
T ss_pred C-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hcc
Confidence 4 3 4677888899999998875543 457888899999999988766444 8888999999999999888864 788
Q ss_pred CCCCcEEEccCCC
Q 004686 540 LVNLKIFSLHGCK 552 (737)
Q Consensus 540 l~~L~~L~l~~~~ 552 (737)
+++|+.|++++|.
T Consensus 199 l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 199 LKNLDVLELFSQE 211 (291)
T ss_dssp CTTCSEEEEEEEE
T ss_pred CCCCCEEECcCCc
Confidence 8999999998876
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=2.4e-15 Score=150.98 Aligned_cols=172 Identities=23% Similarity=0.256 Sum_probs=93.8
Q ss_pred cCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEE
Q 004686 420 KPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKIL 499 (737)
Q Consensus 420 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 499 (737)
..+++|+.|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~------------ 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS------------ 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG------------
T ss_pred hhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch------------
Confidence 4456666666666654433 345556666666666655433222 5555555555555544322 22
Q ss_pred EccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccc
Q 004686 500 CLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 579 (737)
Q Consensus 500 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (737)
.+..+++|++|++++|.++.++ .+..+++|+.|++++|....
T Consensus 107 -------------~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~------------------------ 148 (291)
T 1h6t_A 107 -------------SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD------------------------ 148 (291)
T ss_dssp -------------GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC------------------------
T ss_pred -------------hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc------------------------
Confidence 2444445555555555444442 34445555555555543110
Q ss_pred cCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccchhhhcCCCCCEEccccCccCC
Q 004686 580 SFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 580 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
++.+..+++|++|++++|.+ ++ ++. +..+++|+.|++++|.++.+| .+..+++|+.|++++|+...
T Consensus 149 -~~~l~~l~~L~~L~L~~N~l-~~-~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 149 -ITVLSRLTKLDTLSLEDNQI-SD-IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CGGGGGCTTCSEEECCSSCC-CC-CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -chhhccCCCCCEEEccCCcc-cc-chh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 01244556666777766663 22 322 666777777777777777666 36777777777777776443
No 107
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=4.5e-15 Score=154.20 Aligned_cols=278 Identities=14% Similarity=0.057 Sum_probs=160.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchh--hcccChHHHHHHHHHHHhh-----
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV--SVTRGLVPLQEQLLSEVLM----- 74 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~----- 74 (737)
++|.+++..+ ++++|+|++|+|||+|+++++++.. .+|+...... ....+...+.+.+.+.+..
T Consensus 22 ~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 92 (350)
T 2qen_A 22 RKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQ 92 (350)
T ss_dssp HHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHh
Confidence 3455555543 5999999999999999999998741 5666521110 0011455555555554321
Q ss_pred ----------c--ccccccchhhhHHHHHHHhcC-CeEEEEEcCCCChH--------HHHHHhcCCCCCCCCcEEEEEeC
Q 004686 75 ----------E--RDLIIWDVHKGINLIRWRLCR-KRVLVILDDVDQLE--------QLQALVGNHDWFGFGSRIIITSR 133 (737)
Q Consensus 75 ----------~--~~~~~~~~~~~~~~l~~~l~~-~~~LlilDd~~~~~--------~~~~l~~~l~~~~~~~~iliTtR 133 (737)
. ......+.....+.+.+..+. ++.+||+||++... ++..++..+.+..++..+|+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~ 172 (350)
T 2qen_A 93 SKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172 (350)
T ss_dssp HHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECC
Confidence 0 000112333444445444432 48999999997743 22222222211125778999988
Q ss_pred Cchh-hhh---------c--CcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 004686 134 DEHV-LKS---------H--GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLC 201 (737)
Q Consensus 134 ~~~~-~~~---------~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~ 201 (737)
.... ... . +....+++.+|+.+|+.+++.+........ ...+.+..+++.++|+|+++..++..+.
T Consensus 173 ~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp SHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7532 111 1 122478999999999999998754221111 2235678899999999999998876542
Q ss_pred C-CCHHHHHHHHHHHhcCCchhHHHHHHhhhcCC---ChhhHhhhheeecccCCCCHHHHHHhhhcC--CCCc---hhhH
Q 004686 202 G-RSVEEWKSALNRLQEAPNEKVLKVLRISYDGL---DRRDKEIFLDIACFFKGKDEDRVRKKLDSC--GFNS---DIGI 272 (737)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~L---~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~---~~~l 272 (737)
. .+...+.. ...+ .....+...+..+ ++..++++..++. +..+...+...+... +... ..++
T Consensus 251 ~~~~~~~~~~---~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l 321 (350)
T 2qen_A 251 RNGDFGRAMK---RTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALL 321 (350)
T ss_dssp HHCCHHHHHH---HHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccccHhHHHH---HHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 22222211 1110 1111111122222 7788888888876 334555555443211 2322 4679
Q ss_pred HHHhhcccceeecCEEeH-hHHHHHHHH
Q 004686 273 RELLDKSLITIVNNKLWM-HDLLQEMGW 299 (737)
Q Consensus 273 ~~L~~~~l~~~~~~~~~~-h~l~~~~~~ 299 (737)
+.|++.+++...++.|.+ |++++++.+
T Consensus 322 ~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 322 ENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 999999999987777765 788877653
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=5.9e-16 Score=170.52 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=30.7
Q ss_pred CcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcc
Q 004686 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (737)
+|+.|++.++.+..++....+++|++|+|++|.+..++. +..+++|+.|+|++|.+.. ++.+..+++|++|++++|.
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC
Confidence 344444444444444332333444444444444443333 3344444444444443322 2233334444444444433
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7.3e-15 Score=140.77 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=73.0
Q ss_pred eeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCcccc
Q 004686 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRL 459 (737)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 459 (737)
.+++.++.+..+|..++ +++++|++++|.++.++. .|..+++|+.|++++|.+....+ .|..+++|++|++++|.+.
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 34444444555554433 455666666666655543 35555555555555555544433 2555555555555555443
Q ss_pred ccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccC
Q 004686 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAI 530 (737)
Q Consensus 460 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 530 (737)
...+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 33223344455555555555544444444444455555555555444443333444444455555544443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=7.5e-15 Score=140.68 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=83.6
Q ss_pred eeeeecCCCCCCCCCCCCCCCeeEEccCCccccccc--cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccc
Q 004686 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTR 458 (737)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 458 (737)
.+++.++.++.+|..+ +..+++|++++|.++.++. .|..+++|+.|++++|.+....+ .+..+++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4445555555555443 2345666666666665532 25566666666666666555444 355566666666666555
Q ss_pred cccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4444445555666666666665555444555555555666666555555544555555555555555555544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5.7e-15 Score=140.59 Aligned_cols=128 Identities=17% Similarity=0.047 Sum_probs=55.4
Q ss_pred CCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceeccc
Q 004686 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (737)
+|++|++++|.++.++.. +..+++|++|++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 444444444444444332 34444444444444444433332 3444444444444444333222334444444444444
Q ss_pred cccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCc
Q 004686 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGT 528 (737)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 528 (737)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44433322333344444444444444443333333444444444444444
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=141.00 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=133.6
Q ss_pred CeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC--CCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 402 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
-++++++++.++.+|..+. ..++.|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999998764 4679999999998877543 78999999999999988777777899999999999999
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCccc-CcccccCCCCcEEEccCCC
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 552 (737)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 998777777799999999999999999888889999999999999999999977 6788899999999999987
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=8.5e-15 Score=140.31 Aligned_cols=148 Identities=13% Similarity=0.067 Sum_probs=132.5
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
+.+++++++++.+|..+. ++|+.|++++|.+....+ .+..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578999999999998765 799999999999887776 48899999999999999888778999999999999999998
Q ss_pred ccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-ccccCCCCcEEEccCCC
Q 004686 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 552 (737)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 765544557889999999999999988888899999999999999999998875 47889999999999987
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.5e-15 Score=139.83 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=118.6
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCC-CCCCCCCCCCcEEeccCc
Q 004686 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGC 456 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 456 (737)
.+++.|++.++.+..+++...+++|++|++++|.+..++ .+..+++|++|++++|.+... +..+..+++|++|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 344444444444555554345678999999999777664 688899999999999988763 456889999999999999
Q ss_pred cccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
.+.+..+..+..+++|++|++++|..++.+| .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 8887778889999999999999988677777 58899999999999998765 43 6888999999999999875
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.2e-14 Score=160.18 Aligned_cols=176 Identities=20% Similarity=0.154 Sum_probs=148.2
Q ss_pred hhhcCCCCceEEEcccccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEec
Q 004686 352 SFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNL 430 (737)
Q Consensus 352 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 430 (737)
.+..+++|+.|+++++.+..... ..+.+|+.|++.++.+..++....+++|++|+|++|.+..++ .+..+++|+.|+|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 35678899999999998876432 446789999999999888887668899999999999999876 6899999999999
Q ss_pred CCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc
Q 004686 431 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (737)
++|.+.. .+.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+.+ +
T Consensus 117 s~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l 190 (605)
T 1m9s_A 117 EHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L 190 (605)
T ss_dssp TTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C
T ss_pred cCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C
Confidence 9998775 45688899999999999886654 578899999999999988765544 8899999999999998765 3
Q ss_pred CcccCCCCcccEEEccCccCcccCc
Q 004686 511 PQDLGEVECLEELDVGGTAIRQIPP 535 (737)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~l~~ 535 (737)
..+..+++|+.|++++|.+...|.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECCCC
T ss_pred -hHHccCCCCCEEEccCCcCcCCcc
Confidence 458889999999999998886654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=7.1e-15 Score=152.76 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=91.3
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CC-CCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FT-GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
++++++++.++.+|..+. +.++.|+|++|.+....+. +. .+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355566666666655443 3466666666665555443 33 5666777777666655555556667777777777776
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccc----ccCCCCcEEEccCCC
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSI----VQLVNLKIFSLHGCK 552 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~----~~l~~L~~L~l~~~~ 552 (737)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 655444455667777777777777776666667777777777777777777766543 234444444444443
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.4e-14 Score=138.23 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=91.3
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCccccc-cccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 458 (737)
..++..++.+..+|..++ ++|++|++++|.+..+ +..+..+++|++|++++|.+...++. +..+++|++|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 344555555556665443 5677777777777765 34466677777777777766554443 56666777777777665
Q ss_pred cccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5444445566666666666666543 55655666666666666666655444445566666666666666554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.4e-17 Score=179.34 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=116.8
Q ss_pred CCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceec-
Q 004686 398 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN- 476 (737)
Q Consensus 398 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~- 476 (737)
..++|+.|++++|.++.+|..+..|++|+.|++++|..... ++ . .+..+...+..|..+..+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~------l~---~-ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT------II---L-LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH------HH---H-HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhh------HH---H-HHHhcccccCCHHHHHHHHhcccCcc
Confidence 45688888888888888888888888888888866532100 00 0 0011123345566677777777777
Q ss_pred cccccccccCcc------ccC--CCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEc
Q 004686 477 LKDCRNLVSFPK------NVC--LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSL 548 (737)
Q Consensus 477 l~~n~~~~~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 548 (737)
++.|.+ ..++. .+. ....|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++
T Consensus 417 l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hhhccc-chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 444321 11110 000 01246677777766554 554 66777777777777777777766666666666666
Q ss_pred cCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCc-cccccCCCCCCeEeCCCCCCcc
Q 004686 549 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFS 627 (737)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~n~l~~ 627 (737)
++|.... ++.++++++|++|++++|. +++.. |..++.+++|+.|++++|.++.
T Consensus 494 s~N~l~~-------------------------lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 494 SDNALEN-------------------------VDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCCC-------------------------CGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCC-------------------------CcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 6654110 1234455566666666665 33332 5555556666666666665554
Q ss_pred cchh----hhcCCCCCEEc
Q 004686 628 LPSS----INQLLKLKILC 642 (737)
Q Consensus 628 lp~~----l~~l~~L~~L~ 642 (737)
+|.. +..+|+|+.|+
T Consensus 548 ~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEE
T ss_pred CccHHHHHHHHCcccCccC
Confidence 4332 23355555554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.6e-14 Score=150.02 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=138.7
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccccc-cc-CCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IK-PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 457 (737)
+.+++.++.+..+|..++ ..+++|+|++|.++.++.. +. .+++|+.|++++|.+....+. |..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 567777777888887654 4689999999999988765 55 899999999999988877764 8889999999999988
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCccc---CCCCcccEEEccCccCcccC
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDL---GEVECLEELDVGGTAIRQIP 534 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~l~ 534 (737)
+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.-+..+ ..+++|+.|++++|.++.+|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 766666778999999999999998877777888999999999999988765333334 57899999999999999887
Q ss_pred c-ccccCCC--CcEEEccCCC
Q 004686 535 P-SIVQLVN--LKIFSLHGCK 552 (737)
Q Consensus 535 ~-~~~~l~~--L~~L~l~~~~ 552 (737)
. .+..++. ++.|++.+|.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSC
T ss_pred HHHhhhccHhhcceEEecCCC
Confidence 4 4566766 4889999887
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=3.2e-14 Score=137.32 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=131.1
Q ss_pred CCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
.-+.++++++.+..+|..+. ++|++|++++|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 56789999999999998765 8999999999999887664 88999999999999987555556789999999999999
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-ccccCCCCcEEEccCCC
Q 004686 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 552 (737)
|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.++. .+..+++|+.|++.+|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9877665666789999999999999876 788889999999999999999998875 47789999999999987
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=7.7e-15 Score=144.81 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=83.1
Q ss_pred ccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcE
Q 004686 466 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKI 545 (737)
Q Consensus 466 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 545 (737)
+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.+|.... ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 34444455555544432 2333 34455555555555554433222 5555556666666665555544222 56666
Q ss_pred EEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCC
Q 004686 546 FSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNF 625 (737)
Q Consensus 546 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 625 (737)
|++++|.... ++.+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+
T Consensus 111 L~L~~N~l~~-------------------------~~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 111 LFLDNNELRD-------------------------TDSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSB-------------------------SGGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCC
T ss_pred EEccCCccCC-------------------------ChhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcC
Confidence 6666554111 1224556677777777776432 33 466677777777777777
Q ss_pred cccchhhhcCCCCCEEccccCccCC
Q 004686 626 FSLPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 626 ~~lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
+.+ ..+..+++|+.|++++|+...
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cch-HHhccCCCCCEEeCCCCcccC
Confidence 766 456777777777777776543
No 122
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=4.2e-14 Score=147.24 Aligned_cols=267 Identities=15% Similarity=0.103 Sum_probs=152.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchh-hcccChHHHHHHHHHHHhh-------------cc-----
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV-SVTRGLVPLQEQLLSEVLM-------------ER----- 76 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~-------------~~----- 76 (737)
++++|+|++|+|||+|+++++++... .++|+...... ....+...+...+...+.. ..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~ 107 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 107 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEe
Confidence 59999999999999999999987643 25676522100 0012334444444433311 00
Q ss_pred cc----------cccchhhhHHHHHHHhcCCeEEEEEcCCCChH-----HHHHHhcCCCCCCCCcEEEEEeCCchhhhh-
Q 004686 77 DL----------IIWDVHKGINLIRWRLCRKRVLVILDDVDQLE-----QLQALVGNHDWFGFGSRIIITSRDEHVLKS- 140 (737)
Q Consensus 77 ~~----------~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~-----~~~~l~~~l~~~~~~~~iliTtR~~~~~~~- 140 (737)
.. .........+.+.+..+ ++++||+||++... ++..++..+.+...+..+|+|++.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~ 186 (357)
T 2fna_A 108 MGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDY 186 (357)
T ss_dssp CSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHH
T ss_pred cceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHH
Confidence 00 01122222333332222 49999999997643 222222222211246789999997542111
Q ss_pred ---------c--CcccEEEcCCCChhhHHHHHhhhccC-CCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHH
Q 004686 141 ---------H--GVTNTYKVRGLDYVEALQLFHLKVSN-GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEE 207 (737)
Q Consensus 141 ---------~--~~~~~~~l~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~-~~~~~ 207 (737)
. +....+++.+|+.+++.+++.+.... +..... ...|++.++|+|+++..++..+.. ....+
T Consensus 187 l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~ 261 (357)
T 2fna_A 187 LRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDF 261 (357)
T ss_dssp TTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHH
T ss_pred HhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHH
Confidence 1 11247899999999999999875421 111211 178999999999999998876532 23333
Q ss_pred HHHH-HHHHhcCCchhHHHHHHhhh---cCCChhhHhhhheeecccCCCCHHHHHHhhh-cCC--CC---chhhHHHHhh
Q 004686 208 WKSA-LNRLQEAPNEKVLKVLRISY---DGLDRRDKEIFLDIACFFKGKDEDRVRKKLD-SCG--FN---SDIGIRELLD 277 (737)
Q Consensus 208 ~~~~-~~~~~~~~~~~~~~~~~~s~---~~L~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g--~~---~~~~l~~L~~ 277 (737)
|... .+.. ...+..-+...+ ..+++..+.++..++. +. +...+...+. ..| .. ...+++.|++
T Consensus 262 ~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~ 334 (357)
T 2fna_A 262 AINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK--CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTK 334 (357)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 3211 1111 111111111111 1678888999888887 33 5555543321 123 22 2567999999
Q ss_pred cccceeecCEEe-HhHHHHHHH
Q 004686 278 KSLITIVNNKLW-MHDLLQEMG 298 (737)
Q Consensus 278 ~~l~~~~~~~~~-~h~l~~~~~ 298 (737)
.+++...++.|+ .|++++++.
T Consensus 335 ~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 335 HSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp TTSEEESSSCEEESSHHHHHHT
T ss_pred CCCEEecCCEEEecCHHHHHhh
Confidence 999998766776 578888764
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.6e-14 Score=142.60 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=99.4
Q ss_pred cceeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccc
Q 004686 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRL 459 (737)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 459 (737)
+..+.+.++.+..++....+++|++|++++|.++.++ .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 3344444444444442224556666677666666665 56666777777777666555444 666677777777776544
Q ss_pred ccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCccccc
Q 004686 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQ 539 (737)
Q Consensus 460 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~ 539 (737)
+ ++. +.. ++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+. + .++.+++|+.|++++|.++.+ ..+..
T Consensus 99 ~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 99 N-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp C-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred C-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 3 332 222 667777777765433 33 366677777777777766542 2 466677777777777777766 45666
Q ss_pred CCCCcEEEccCCC
Q 004686 540 LVNLKIFSLHGCK 552 (737)
Q Consensus 540 l~~L~~L~l~~~~ 552 (737)
+++|+.|++++|.
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 7777777777665
No 124
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=3e-13 Score=143.77 Aligned_cols=261 Identities=15% Similarity=0.139 Sum_probs=152.9
Q ss_pred CeEEEEE--EcCCCCcHHHHHHHHHHHHhcc-----cC-ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhh
Q 004686 14 DVRFIGI--CGMGGIGKTTLAKVLYNTLKDQ-----FE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (737)
Q Consensus 14 ~~~~i~i--~G~~G~GKT~la~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 85 (737)
..+.++| +|++|+|||++|+.++++.... +. .++|+. +....+..+++.+++.+++........+...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 3467777 9999999999999999876542 22 245665 4455677888899988875543221223334
Q ss_pred hHHHHHHHhc--CCeEEEEEcCCCChH--------HHHHHhcCCCCC---C--CCcEEEEEeCCchhhhh---------c
Q 004686 86 GINLIRWRLC--RKRVLVILDDVDQLE--------QLQALVGNHDWF---G--FGSRIIITSRDEHVLKS---------H 141 (737)
Q Consensus 86 ~~~~l~~~l~--~~~~LlilDd~~~~~--------~~~~l~~~l~~~---~--~~~~iliTtR~~~~~~~---------~ 141 (737)
....+.+.+. +++++||+||++... .+..+...+... + ....+|+||+....... .
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~ 204 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh
Confidence 4555555554 679999999997643 233332222111 1 34457778875432211 1
Q ss_pred CcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhC------CCchHHHHHHHHhc------C---CCHH
Q 004686 142 GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG------GLPLAIEVLGSFLC------G---RSVE 206 (737)
Q Consensus 142 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~------G~Pl~i~~~a~~l~------~---~~~~ 206 (737)
+....+++++++.++++++|..++...........+..+.+++.++ |+|..+..++.... + -+.+
T Consensus 205 ~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 205 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 1122489999999999999976542111111223466788999999 99976665543221 1 1222
Q ss_pred HHHHHHHHHhcCCchhHHHHHHhhhcCCChhhHhhhheeeccc----CCCCHHHHH----Hhh-hcCCCC------chhh
Q 004686 207 EWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFF----KGKDEDRVR----KKL-DSCGFN------SDIG 271 (737)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p----~~~~~~~l~----~~~-~~~g~~------~~~~ 271 (737)
.+......... ...+...+..||+..+.++..++.+. ..++...+. .+. ...|.. ...+
T Consensus 285 ~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (412)
T 1w5s_A 285 LVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIY 358 (412)
T ss_dssp HHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 33222221100 23345567889999999888887653 222333222 222 222321 1456
Q ss_pred HHHHhhcccceee
Q 004686 272 IRELLDKSLITIV 284 (737)
Q Consensus 272 l~~L~~~~l~~~~ 284 (737)
++.|++.+++...
T Consensus 359 l~~L~~~gli~~~ 371 (412)
T 1w5s_A 359 LKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCEEee
Confidence 8999999999875
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=4.7e-14 Score=129.14 Aligned_cols=137 Identities=19% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCCCeeEEccCCccc--cccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceec
Q 004686 399 PEKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (737)
Q Consensus 399 ~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (737)
+++|++|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 467888888888888 7877778888888888888876655 6677788888888888877665666667788888888
Q ss_pred ccccccccc-CccccCCCCCccEEEccCCCCCcccC---cccCCCCcccEEEccCccCcccCcc
Q 004686 477 LKDCRNLVS-FPKNVCLMKSLKILCLCGCLKLEKLP---QDLGEVECLEELDVGGTAIRQIPPS 536 (737)
Q Consensus 477 l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~l~~~ 536 (737)
+++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888765432 12567777777777777776654333 3567777777777777777766653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=1.5e-15 Score=166.21 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=133.6
Q ss_pred CCCCCCcEEeccCccccccccccccCccccceecccccc-------------ccccCccccCCCCCccEEE-ccCCCCCc
Q 004686 443 TGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR-------------NLVSFPKNVCLMKSLKILC-LCGCLKLE 508 (737)
Q Consensus 443 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 508 (737)
..+++|+.|++++|.+ +.+|..+++|++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 5678889999998765 5788889999999999987654 3455666777888888887 4443221
Q ss_pred ccCc------ccCC--CCcccEEEccCccCcccCcccccCCCCcEEEccCCCC-CCCcCccchhhhcccCCCCCCCCccc
Q 004686 509 KLPQ------DLGE--VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLPNKNSDSMCL 579 (737)
Q Consensus 509 ~~~~------~l~~--l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (737)
.++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.. .+|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp----------------------- 479 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP----------------------- 479 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC-----------------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc-----------------------
Confidence 1110 0111 1258899999999998887 88899999999998872 222
Q ss_pred cCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCccc--chhhhcCCCCCEEccccCccCCC
Q 004686 580 SFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL--PSSINQLLKLKILCLEKCRNLKS 651 (737)
Q Consensus 580 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~n~~~~~ 651 (737)
..++++++|+.|++++|.+.. +| .++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+....
T Consensus 480 --~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 480 --PALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp --GGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred --hhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 236678899999999998543 66 788899999999999999876 78889999999999999986544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=3e-13 Score=126.45 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=66.0
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC--CCCCCCCcEEeccCccccccccccccCccccceeccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (737)
+++++++++++.+|..+.. +|+.|++++|.+....+. +..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3455555555555543322 555555555544444332 445555555555555544444455555555555555555
Q ss_pred cccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 544444444555555555555555555555555555555555555555544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.3e-13 Score=123.25 Aligned_cols=125 Identities=19% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCCeeEEccCCccc--cccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceecc
Q 004686 400 EKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (737)
Q Consensus 400 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (737)
++|++|++++|.+. .+|..+..+++|+.|++++|.+... +.+..+++|++|++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n--------------------- 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN--------------------- 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS---------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC---------------------
Confidence 35555555555555 4555455555555555555544433 33444445555555444
Q ss_pred ccccccccCccccCCCCCccEEEccCCCCCcc-cCcccCCCCcccEEEccCccCcccCc----ccccCCCCcEEEcc
Q 004686 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLKIFSLH 549 (737)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l~~----~~~~l~~L~~L~l~ 549 (737)
.+.+.+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 75 ---~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 75 ---RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ---CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ---cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 44333444444455555555555554431 22455566666666666666665554 45556666666654
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1.2e-12 Score=122.35 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=111.2
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccccc--ccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCcc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG--IKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCT 457 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 457 (737)
+.+++.++.+..+|..++. ++++|++++|.++.++.. +..+++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5666777777778876644 899999999999988764 8899999999999999888766 48899999999999999
Q ss_pred ccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc
Q 004686 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (737)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88777788999999999999999988888888999999999999999887543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=4.2e-13 Score=137.50 Aligned_cols=261 Identities=16% Similarity=0.121 Sum_probs=132.5
Q ss_pred hhhc-CCCCceEEEcccccC--CCccccccCcceeeeecCCCCCCCCCC--C--------CCCCeeEEccCCcccccccc
Q 004686 352 SFST-MSNLRLLEINNLYSS--GNLEYLSNNLRYLKWHEYPFNSLPVSF--R--------PEKLFKLNLCNSRIKYLWKG 418 (737)
Q Consensus 352 ~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~~~~~~~~l~~~~--~--------~~~L~~L~l~~~~i~~l~~~ 418 (737)
.+.. +++|++|++++|.+. ......+.... +.....+.+|... . +.+|+.+++.+ .++.+++.
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~---~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGK---FYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGC---CEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred HHHHhhccCeEEecCcceeEEecCccccccccc---cccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 3444 778888888888877 22222222222 2222223444332 3 56666666666 66666533
Q ss_pred -ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCcccc----ccccccccCccccc-eeccccccccc-cCcccc
Q 004686 419 -IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL----LEVHQSVGTLKRLI-LLNLKDCRNLV-SFPKNV 490 (737)
Q Consensus 419 -~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~-~L~l~~n~~~~-~~~~~~ 490 (737)
|.+|++|+.+++++|.+....+. |..+.++..+........ ......+..+..|+ .+.+....... .+...-
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 66666666666666655444332 555555555555442110 01112333444444 23332211100 000111
Q ss_pred CCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcc-cccCCCCcEEEccCCCCCCCcCccchhhhcccC
Q 004686 491 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (737)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 569 (737)
....++..+.+.++-...........+++|+.+++++|.++.+|.. +..|++|+.+++.+|-..
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~--------------- 263 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT--------------- 263 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE---------------
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce---------------
Confidence 1234445555544321111111112366777777777777777653 556777777777664211
Q ss_pred CCCCCCCccccCCCCCCCCCCc-EEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEc
Q 004686 570 PNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILC 642 (737)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~ 642 (737)
..-..|.+|++|+ .+.+.+ . ++...+..|.+|++|+.|++++|.++.++. .|.+|++|+.++
T Consensus 264 ---------I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 264 ---------IGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------ECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ---------ehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 1123366777777 777766 3 322334566677777777777777776554 566677777664
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.8e-11 Score=128.56 Aligned_cols=256 Identities=16% Similarity=0.098 Sum_probs=155.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcc--------cCceEEEeecchhhccc-ChHHHHHHHHHHHhhccc-ccccc
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERD-LIIWD 82 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~--------f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~-~~~~~ 82 (737)
...+.+.|+|++|+|||++|+.++...... ....+|+. +.... +..++..+++.++..... .....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 118 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGTPQAVLSSLAGKLTGFSVPKHGIN 118 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSCHHHHHHHHHHHHHCSCCCSSSSC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 344699999999999999999999976433 23355655 44445 777888888887643211 11123
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCChHH-------HHHHhcCCCCCCCCcEEEEEeCCchh----hhh--cCcccEEEc
Q 004686 83 VHKGINLIRWRLCRKRVLVILDDVDQLEQ-------LQALVGNHDWFGFGSRIIITSRDEHV----LKS--HGVTNTYKV 149 (737)
Q Consensus 83 ~~~~~~~l~~~l~~~~~LlilDd~~~~~~-------~~~l~~~l~~~~~~~~iliTtR~~~~----~~~--~~~~~~~~l 149 (737)
.......+.+.++.++.+||+|+++.... +..+.... .+..+|+||+.... ... .+....+++
T Consensus 119 ~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l 194 (384)
T 2qby_B 119 LGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIF 194 (384)
T ss_dssp THHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEE
Confidence 34556677777777666999999976542 33333322 67788888886522 111 122238999
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhC---CCchHHH-HHHHH--hc-C---CCHHHHHHHHHHHhcCC
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG---GLPLAIE-VLGSF--LC-G---RSVEEWKSALNRLQEAP 219 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~-~~a~~--l~-~---~~~~~~~~~~~~~~~~~ 219 (737)
++++.++..+++..++..........++..+.+++.++ |.|..+. .+... +. + -+.+.+...++...
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~--- 271 (384)
T 2qby_B 195 KPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE--- 271 (384)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh---
Confidence 99999999999998753111111122345667778887 9887433 22221 11 1 24556655555432
Q ss_pred chhHHHHHHhhhcCCChhhHhhhheeecccCC-CCH-HHHHHhhhcCCCCc------hhhHHHHhhcccceee
Q 004686 220 NEKVLKVLRISYDGLDRRDKEIFLDIACFFKG-KDE-DRVRKKLDSCGFNS------DIGIRELLDKSLITIV 284 (737)
Q Consensus 220 ~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~-~~~-~~l~~~~~~~g~~~------~~~l~~L~~~~l~~~~ 284 (737)
...+..++..+++..+..+..++. ... -+. +....+....|..+ ..+++.|.+.++++..
T Consensus 272 ----~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 272 ----QERLIEAVKALPFHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ----HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ----cchHHHHHHcCCHHHHHHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 234566778888888877766665 111 111 12233333333211 4568889999999875
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=5.3e-13 Score=119.32 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=89.4
Q ss_pred CCCCcEEeccCcccc-ccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEE
Q 004686 445 VPNLERLNLEGCTRL-LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEEL 523 (737)
Q Consensus 445 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 523 (737)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777888877765 46677778888888888888765544 568899999999999999988788888889999999
Q ss_pred EccCccCcccC--cccccCCCCcEEEccCCC
Q 004686 524 DVGGTAIRQIP--PSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 524 ~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~ 552 (737)
++++|.++.++ ..+..+++|++|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 99999999765 788999999999999997
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=8e-14 Score=157.72 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=78.6
Q ss_pred CCCeeEEccCCccccccccccCCCCCcEEecC-----CCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccce
Q 004686 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLS-----HSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL 474 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 474 (737)
++++.|++.++.+...+..+.....|+.+.+. .|.+......+..++.|+.|++++|.+. .+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 46788888888888766554444444443332 2222222223667777888888777654 56656667777888
Q ss_pred eccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCC
Q 004686 475 LNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 475 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 552 (737)
|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++.+++|+.|++++|.
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 888777655 67777777777777777777766 56777777777777777777777777777777777777777765
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=9.1e-13 Score=120.46 Aligned_cols=131 Identities=18% Similarity=0.131 Sum_probs=113.0
Q ss_pred cCCCCCcEEecCCCcCC--CCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCcc
Q 004686 420 KPLKELKFMNLSHSCNL--IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (737)
Q Consensus 420 ~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 497 (737)
...++|+.|++++|.+. ..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34589999999999987 4444478899999999999986544 7889999999999999998777888777899999
Q ss_pred EEEccCCCCCcc-cCcccCCCCcccEEEccCccCcccCc----ccccCCCCcEEEccCCC
Q 004686 498 ILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 498 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~ 552 (737)
+|++++|.+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|++|++.+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999999987653 23678999999999999999998887 78889999999999987
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3e-12 Score=119.52 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=71.9
Q ss_pred eeeeecCCCCCCCCCCCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccc
Q 004686 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLL 460 (737)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 460 (737)
.+++.++.+..+|..++ .+|++|++++|.++.+|..+..+++|+.|++++|.+....+. |.++++|++|++++|.+..
T Consensus 14 ~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSCCC-TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCCCC-CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 44555555555665442 467777777777776666666677777777777666655543 5666666666666665554
Q ss_pred cccccccCccccceeccccccccccCccccCCCCCccEEEccCCCC
Q 004686 461 EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLK 506 (737)
Q Consensus 461 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (737)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4445555556666666655554433333344455555555555443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=120.81 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=71.9
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (737)
++++++++.++.+|..+. ++|+.|++++|.+...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 467777777777776543 466777777666654444455666666666666655544445555566666666665554
Q ss_pred cccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccC
Q 004686 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAI 530 (737)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 530 (737)
.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 444444455555555555555554433333445555555555555544
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=2e-13 Score=154.52 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=108.4
Q ss_pred cCcceeeeecCCCCCCCCCC-CCCC-----CeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEE
Q 004686 378 NNLRYLKWHEYPFNSLPVSF-RPEK-----LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERL 451 (737)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~-~~~~-----L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 451 (737)
+.++.|++..+.....+... ...+ +..+++..|.+...+..+..+++|+.|+|++|.+...++.+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34667777666655544332 1222 22333333444445667899999999999999988666667799999999
Q ss_pred eccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 452 NLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 452 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..|+.+++|+.|+|++|.++
T Consensus 253 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 253 YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp BCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred EeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 99998876 88889999999999999999866 88999999999999999999875 78888999999999999999998
Q ss_pred -ccCcccccCCC-CcEEEccCCC
Q 004686 532 -QIPPSIVQLVN-LKIFSLHGCK 552 (737)
Q Consensus 532 -~l~~~~~~l~~-L~~L~l~~~~ 552 (737)
.+|..+..+.. +..+++.+|.
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChHHHhhcchhhhHHhhccCc
Confidence 44554433321 1234565555
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.6e-12 Score=118.37 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=66.3
Q ss_pred CCCCCcEEecCCCcCCCCCCCCCCCC-CCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEE
Q 004686 421 PLKELKFMNLSHSCNLIRTPDFTGVP-NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKIL 499 (737)
Q Consensus 421 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 499 (737)
.+.+|+.|++++|.+... +.+..+. +|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 344444444444433322 2222222 455555555443322 344555555555555554432222222555666666
Q ss_pred EccCCCCCcccCc--ccCCCCcccEEEccCccCcccCcc----cccCCCCcEEEccCCC
Q 004686 500 CLCGCLKLEKLPQ--DLGEVECLEELDVGGTAIRQIPPS----IVQLVNLKIFSLHGCK 552 (737)
Q Consensus 500 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~ 552 (737)
++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 94 ~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666555 23333 456666777777777777666664 6667777777776654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.5e-11 Score=113.45 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=59.7
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
+.++++++++..+|..+. ++|+.|++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344444444444443322 3555555555544433332 3445555555555544433333334455555555555544
Q ss_pred ccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc
Q 004686 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44333333445555555555555444333333444555555555555544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.6e-12 Score=118.28 Aligned_cols=132 Identities=16% Similarity=0.080 Sum_probs=102.1
Q ss_pred CCCCCCeeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceec
Q 004686 397 FRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (737)
Q Consensus 397 ~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (737)
..+.+|++|++++|.++.++......++|++|++++|.+... +.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 356788888888888888754333344899999999877765 6688888999999999876644334458889999999
Q ss_pred cccccccccCcc--ccCCCCCccEEEccCCCCCcccCcc----cCCCCcccEEEccCccCc
Q 004686 477 LKDCRNLVSFPK--NVCLMKSLKILCLCGCLKLEKLPQD----LGEVECLEELDVGGTAIR 531 (737)
Q Consensus 477 l~~n~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 531 (737)
+++|.+ +.+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|...
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 998875 55565 6788899999999998875 45553 788899999999888765
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=8.4e-11 Score=123.64 Aligned_cols=271 Identities=13% Similarity=0.103 Sum_probs=156.5
Q ss_pred hhHHhhhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEeecchhhcccChHHHHHHHHHHHhh
Q 004686 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (737)
Q Consensus 3 ~l~~~l~~~--~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 74 (737)
++.+++... ....+.++|+|++|+|||++|+.++...... -...+|+. +....+...+..+++.+++.
T Consensus 30 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~ 105 (387)
T 2v1u_A 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPYRVASAIAEAVGV 105 (387)
T ss_dssp HHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHHHHHHHHHHHhCC
Confidence 455555432 3445689999999999999999999876432 12345555 55556777888888888754
Q ss_pred cccccccchhhhHHHHHHHh--cCCeEEEEEcCCCChHH-------HHHHhcCCCCC--CCCcEEEEEeCCchhhh----
Q 004686 75 ERDLIIWDVHKGINLIRWRL--CRKRVLVILDDVDQLEQ-------LQALVGNHDWF--GFGSRIIITSRDEHVLK---- 139 (737)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l--~~~~~LlilDd~~~~~~-------~~~l~~~l~~~--~~~~~iliTtR~~~~~~---- 139 (737)
...............+.+.+ .+++.+||+|+++.... +..+....... +.+..+|.||+......
T Consensus 106 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~ 185 (387)
T 2v1u_A 106 RVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEP 185 (387)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCH
Confidence 33222223444455666665 35689999999976542 22323222111 34557777777642211
Q ss_pred h--cCcc-cEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhC---CCchHHHHHHHHh----c--C---CC
Q 004686 140 S--HGVT-NTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG---GLPLAIEVLGSFL----C--G---RS 204 (737)
Q Consensus 140 ~--~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~a~~l----~--~---~~ 204 (737)
. .+.. ..+.+++++.++..+++.+.+..........++..+.+++.++ |.|..+..+.... . + -+
T Consensus 186 ~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~ 265 (387)
T 2v1u_A 186 RVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVR 265 (387)
T ss_dssp HHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBC
T ss_pred HHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 1 1222 3789999999999999988753100111222345677888888 9995443332221 1 1 13
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhhhcCCChhhHhhhheeecccCC---CCHH----HHHHhhhcCCCCc------hhh
Q 004686 205 VEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFKG---KDED----RVRKKLDSCGFNS------DIG 271 (737)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~~---~~~~----~l~~~~~~~g~~~------~~~ 271 (737)
.+.+...++... ...+..++..+++..+..+..+..+..+ .... .........|..+ ...
T Consensus 266 ~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (387)
T 2v1u_A 266 REHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGI 338 (387)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 445554444331 2245566788898888777665532212 1222 2223333333211 456
Q ss_pred HHHHhhcccceee
Q 004686 272 IRELLDKSLITIV 284 (737)
Q Consensus 272 l~~L~~~~l~~~~ 284 (737)
++.|...|+++..
T Consensus 339 l~~L~~~gli~~~ 351 (387)
T 2v1u_A 339 ISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 8888999999874
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=7.8e-12 Score=128.04 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=28.8
Q ss_pred CCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceecccc
Q 004686 422 LKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (737)
Q Consensus 422 l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (737)
|++|+.+++.+ .+..... .|.+|++|+.|++.+|.+....+..|..+.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 56666666655 3333333 255566666666665554444444555555555554443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=3.6e-10 Score=118.74 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=114.4
Q ss_pred ccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccE
Q 004686 419 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKI 498 (737)
Q Consensus 419 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 498 (737)
|..|.+|+.+.+..+........|.++.+|+.+.+..+ ........+.++..|+.+.+..+. ..+........+|+.
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCE
T ss_pred hcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCce
Confidence 55555566655554322211223555555555555442 112222345555555555554321 111222233344555
Q ss_pred EEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCcc
Q 004686 499 LCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMC 578 (737)
Q Consensus 499 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (737)
+.+... ........+..+.+|+.+.+..+...--...+..+..++.+......
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-------------------------- 287 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-------------------------- 287 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE--------------------------
T ss_pred EEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee--------------------------
Confidence 554331 11122233445555555555443322222233344455544443211
Q ss_pred ccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccc-hhhhcCCCCCEEccccCccCCCCCCCCC
Q 004686 579 LSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELPP 657 (737)
Q Consensus 579 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~l~~ 657 (737)
..-..+.++++|+.+.+..+ ++......|.+|.+|+.+++..+ ++.++ ..|.+|.+|+.++|..+ ++.++.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~--- 359 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGA--- 359 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT---
T ss_pred eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehH---
Confidence 11123566777888877654 22223345667778888887644 55554 35777778887777554 222211
Q ss_pred ccceeecccccccccccccccccCCCCceEEEecCCCcccc
Q 004686 658 EIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVED 698 (737)
Q Consensus 658 ~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L 698 (737)
-.+.+|++|+.+.+..+... +...|.+|++|+.+
T Consensus 360 ----~aF~~C~~L~~i~lp~~~~~---~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 ----NAFQGCINLKKVELPKRLEQ---YRYDFEDTTKFKWI 393 (394)
T ss_dssp ----TTBTTCTTCCEEEEEGGGGG---GGGGBCTTCEEEEE
T ss_pred ----HHhhCCCCCCEEEECCCCEE---hhheecCCCCCcEE
Confidence 13567777777766544222 23457777777653
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.6e-11 Score=111.71 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=101.4
Q ss_pred ceeeeecCCCCCCCCCCCCCCCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccc
Q 004686 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (737)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 458 (737)
+.+++.++.+..+|..+. ++|++|++++|.++.++.. +..+++|++|++++|.+...++. +..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 456666666667775543 6889999999998887754 68899999999999988776665 67899999999999887
Q ss_pred cccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCccc
Q 004686 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (737)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (737)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7666667888999999999998776544445678899999999998876543
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=5.2e-11 Score=125.18 Aligned_cols=271 Identities=14% Similarity=0.073 Sum_probs=151.5
Q ss_pred hhHHhhhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc---CceEEEeecchhhcccChHHHHHHHHHHHhhccc
Q 004686 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (737)
Q Consensus 3 ~l~~~l~~~--~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 77 (737)
++.+++... ....+.++|+|++|+|||++|+.++......+ ..++|+. +....+...+...++..++....
T Consensus 31 ~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~i~~~l~~~~~ 106 (386)
T 2qby_A 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVLADLLESLDVKVP 106 (386)
T ss_dssp HHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHHHHHTTTTSCCCC
T ss_pred HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHHHHHHHHhCCCCC
Confidence 444555531 34456899999999999999999999776543 2355665 44445666677777666543222
Q ss_pred ccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCC-CCCCcEEEEEeCCchhhhhc------C
Q 004686 78 LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDW-FGFGSRIIITSRDEHVLKSH------G 142 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~------~~~~l~~~l~~-~~~~~~iliTtR~~~~~~~~------~ 142 (737)
............+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||+........ +
T Consensus 107 ~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r 186 (386)
T 2qby_A 107 FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSS 186 (386)
T ss_dssp SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhcc
Confidence 111223344555555554 458999999986543 23333322211 13456678888765322211 1
Q ss_pred c-ccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhC---CCchHHHHHHHHhc------C---CCHHHHH
Q 004686 143 V-TNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG---GLPLAIEVLGSFLC------G---RSVEEWK 209 (737)
Q Consensus 143 ~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~a~~l~------~---~~~~~~~ 209 (737)
. ...+.+++++.++..+++.+.+...........+..+.+++.++ |.|..+..+..... + -+.+.+.
T Consensus 187 ~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 187 LSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp TTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred CCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 1 14799999999999999988652111111223355667777777 99985444333221 1 1334444
Q ss_pred HHHHHHhcCCchhHHHHHHhhhcCCChhhHhhhheeecccC----CCCHHHH----HHhhhcCCCC------chhhHHHH
Q 004686 210 SALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK----GKDEDRV----RKKLDSCGFN------SDIGIREL 275 (737)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p~----~~~~~~l----~~~~~~~g~~------~~~~l~~L 275 (737)
...+... ...+...+..++...+..+..++.+.. .+....+ ..+....|.. ...+++.|
T Consensus 267 ~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L 339 (386)
T 2qby_A 267 MAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINEL 339 (386)
T ss_dssp HHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 4333321 234556677888887777665553211 1122211 2222222221 14568889
Q ss_pred hhcccceee
Q 004686 276 LDKSLITIV 284 (737)
Q Consensus 276 ~~~~l~~~~ 284 (737)
.+.+++...
T Consensus 340 ~~~gli~~~ 348 (386)
T 2qby_A 340 DMVGILTAK 348 (386)
T ss_dssp HHHTSEEEE
T ss_pred HhCCCEEEE
Confidence 999999764
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=1.3e-10 Score=122.25 Aligned_cols=262 Identities=13% Similarity=0.109 Sum_probs=153.8
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc-CceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 90 (737)
.+..+.++|+|++|+|||++++.++....... ..++++. +....+..++...++..++..............+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 116 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALL 116 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHH
Confidence 33445899999999999999999999876542 3455655 555566778888888876543222222334444455
Q ss_pred HHHhc--CCeEEEEEcCCCCh--HHHHHHhcCCCCCC----CCcEEEEEeCCchhhhhc------Ccc-cEEEcCCCChh
Q 004686 91 RWRLC--RKRVLVILDDVDQL--EQLQALVGNHDWFG----FGSRIIITSRDEHVLKSH------GVT-NTYKVRGLDYV 155 (737)
Q Consensus 91 ~~~l~--~~~~LlilDd~~~~--~~~~~l~~~l~~~~----~~~~iliTtR~~~~~~~~------~~~-~~~~l~~l~~~ 155 (737)
.+.+. +++.+||+|+++.. ..+..+...+.... .+..+|++|+........ +.. ..+.+++++.+
T Consensus 117 ~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp HHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred HHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 54443 56899999999765 33555544443221 466788888765322211 111 26999999999
Q ss_pred hHHHHHhhhccCCCCCChHHHHHHHHHHHHh---------CCCchHHHHHHHHhc------C---CCHHHHHHHHHHHhc
Q 004686 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYA---------GGLPLAIEVLGSFLC------G---RSVEEWKSALNRLQE 217 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Pl~i~~~a~~l~------~---~~~~~~~~~~~~~~~ 217 (737)
+..+++.+.+..........++..+.+++.+ +|.|..+..+..... + -+.+..........
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~- 275 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL- 275 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-
Confidence 9999998875321111123446778889999 798866555443221 1 12222222222211
Q ss_pred CCchhHHHHHHhhhcCCChhhHhhhheeeccc---C--CCCHHHHHH----hhhcCCCCc------hhhHHHHhhcccce
Q 004686 218 APNEKVLKVLRISYDGLDRRDKEIFLDIACFF---K--GKDEDRVRK----KLDSCGFNS------DIGIRELLDKSLIT 282 (737)
Q Consensus 218 ~~~~~~~~~~~~s~~~L~~~~~~~~~~~~~~p---~--~~~~~~l~~----~~~~~g~~~------~~~l~~L~~~~l~~ 282 (737)
. ..+...+..++...+.++..++.+. . ......+.. +....|... ...++.|.+.+++.
T Consensus 276 --~----~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 349 (389)
T 1fnn_A 276 --F----GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVE 349 (389)
T ss_dssp --C----CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSE
T ss_pred --h----hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 1 1122335667777777776666543 1 233333322 222222211 35689999999998
Q ss_pred ee
Q 004686 283 IV 284 (737)
Q Consensus 283 ~~ 284 (737)
..
T Consensus 350 ~~ 351 (389)
T 1fnn_A 350 TR 351 (389)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=8.6e-10 Score=115.21 Aligned_cols=218 Identities=10% Similarity=0.020 Sum_probs=109.9
Q ss_pred CCeeEEccCCccccccc-cccCCCCCcEEecCCCcCCCCCC-CCCCCCCCcEEeccCccccccccccccCccccceeccc
Q 004686 401 KLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (737)
+|+.+.+..+ ++.++. +|.++ +|+.+.+..+ +..... .|.+|++|+.+++.+|.+.......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555433 444432 24443 4666665542 222222 255566666666655443322223333 4556666655
Q ss_pred cccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccC-cccccCCCCcEEEccCCCCCCCc
Q 004686 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPK 557 (737)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~ 557 (737)
.+ ....-...+.++++|+.+++..+ +...-...|.+ .+|+.+.+. +.++.++ ..+.+|++|+.+.+.++.....
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~- 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD- 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC-
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC-
Confidence 32 22222344555666666666542 22222333444 556666663 3355443 3455666777776665442100
Q ss_pred CccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccc-hhhhcCC
Q 004686 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSINQLL 636 (737)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~l~ 636 (737)
......-..|.+|++|+.+.+..+ ++......|.+|++|+.+.|..+ ++.++ ..|.+|
T Consensus 287 -----------------~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 287 -----------------PEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp -----------------TTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred -----------------cccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 000011234667777777777632 22223445667777777777544 55443 356777
Q ss_pred CCCEEccccCcc
Q 004686 637 KLKILCLEKCRN 648 (737)
Q Consensus 637 ~L~~L~l~~n~~ 648 (737)
+|+.+++.+|..
T Consensus 346 ~L~~l~l~~n~~ 357 (401)
T 4fdw_A 346 GIKEVKVEGTTP 357 (401)
T ss_dssp CCCEEEECCSSC
T ss_pred CCCEEEEcCCCC
Confidence 777887777753
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=2.7e-13 Score=127.69 Aligned_cols=147 Identities=19% Similarity=0.193 Sum_probs=82.5
Q ss_pred cCccccceeccccccccccCcc------ccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCcccccC
Q 004686 467 GTLKRLILLNLKDCRNLVSFPK------NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQL 540 (737)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l 540 (737)
.....++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 3344455555555554444443 55556666666666655544 44 5556666666666666666666555555
Q ss_pred CCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCcc--ccccCCCCCCeE
Q 004686 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP--SDIGSLFSLEAI 618 (737)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L 618 (737)
++|+.|++++|.... ++.+..+++|++|++++|.+.. ++ ..+..+++|++|
T Consensus 93 ~~L~~L~L~~N~l~~-------------------------l~~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-------------------------LSGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHCSEEEEEEEECCC-------------------------HHHHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEE
T ss_pred CcCCEEECcCCcCCc-------------------------CCccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEE
Confidence 666666665554110 0113345566666766666432 22 356667777777
Q ss_pred eCCCCCCcccch-----------hhhcCCCCCEEc
Q 004686 619 DLSGNNFFSLPS-----------SINQLLKLKILC 642 (737)
Q Consensus 619 ~l~~n~l~~lp~-----------~l~~l~~L~~L~ 642 (737)
++++|.++..+. .+..+++|+.|+
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777776653321 256777777776
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=1.7e-09 Score=112.96 Aligned_cols=236 Identities=10% Similarity=-0.006 Sum_probs=161.1
Q ss_pred CcceeeeecCCCCCCCCC-CCCCCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCc
Q 004686 379 NLRYLKWHEYPFNSLPVS-FRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (737)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~-~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (737)
+++.+.+.+. +..++.. |.-.+|+.+.+.+ .+..+. ..|.+|.+|+.++++.|.+.........+.+|+.+.+..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 3444444332 4444432 3335788888875 677776 4588899999999998877766665334688999999753
Q ss_pred cccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCc-----
Q 004686 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR----- 531 (737)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----- 531 (737)
+.......|..|++|+.+++..+ ....-...+.+ .+|+.+.+.+ .+...-...|.++++|+.+.+.++.+.
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred -hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 33344477889999999999863 32222334444 7899998854 444444667888999999999887664
Q ss_pred ccC-cccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCcccccc
Q 004686 532 QIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIG 610 (737)
Q Consensus 532 ~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 610 (737)
.++ ..+..|++|+.+.+..+-.. ..-..|.+|++|+.+.|..+ ++......|.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~~i~~------------------------I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~ 343 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPESIRI------------------------LGQGLLGGNRKVTQLTIPAN--VTQINFSAFN 343 (401)
T ss_dssp EECTTTTTTCTTCCEECCCTTCCE------------------------ECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred EECHHHhhCCccCCeEEeCCceEE------------------------EhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence 344 35677899999988743211 12244788999999999655 3333455678
Q ss_pred CCCCCCeEeCCCCCCcccch-hhhcCC-CCCEEccccCc
Q 004686 611 SLFSLEAIDLSGNNFFSLPS-SINQLL-KLKILCLEKCR 647 (737)
Q Consensus 611 ~~~~L~~L~l~~n~l~~lp~-~l~~l~-~L~~L~l~~n~ 647 (737)
+| +|+.+.+.+|....++. .+..++ +++.|.+..+.
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 88 99999999998775553 466664 77888887654
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=5.1e-11 Score=116.63 Aligned_cols=187 Identities=13% Similarity=0.099 Sum_probs=105.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---cc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DL 78 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~ 78 (737)
+++.+++..+. ..+.++|+|++|+|||++|+.++......+.... .. +.. ... ...+........ ..
T Consensus 33 ~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~----~~~---~~~-~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 33 TALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TP----CGV---CDN-CREIEQGRFVDLIEIDA 102 (250)
T ss_dssp HHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS-SC----CSC---SHH-HHHHHTTCCSSEEEEET
T ss_pred HHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CC----Ccc---cHH-HHHHhccCCcceEEecC
Confidence 34555565432 2348999999999999999999987654331110 00 000 000 011110000000 00
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCchhh-hh-cCcccEEEc
Q 004686 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHVL-KS-HGVTNTYKV 149 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~~~-~~-~~~~~~~~l 149 (737)
...........+.+.+ .+++.+||+||++.. ..++.+...+.....+..+|+||+..... .. ......+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l 182 (250)
T 1njg_A 103 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 182 (250)
T ss_dssp TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccC
Confidence 0000111122222222 246799999999764 34555554443335677888888764321 11 122357999
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l 200 (737)
++++.++..+++.+.+.... ....++..+.|++.++|+|..+..++..+
T Consensus 183 ~~l~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 183 KALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999988763322 12234567889999999999888776543
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.4e-12 Score=122.72 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=92.1
Q ss_pred ccccccccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCcccc
Q 004686 411 RIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 490 (737)
Q Consensus 411 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 490 (737)
.++.+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 3445555677777778888877766653 36666777888888777654 566666677788888888876543 44 46
Q ss_pred CCCCCccEEEccCCCCCcccC-cccCCCCcccEEEccCccCcccCc-----------ccccCCCCcEEE
Q 004686 491 CLMKSLKILCLCGCLKLEKLP-QDLGEVECLEELDVGGTAIRQIPP-----------SIVQLVNLKIFS 547 (737)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~-----------~~~~l~~L~~L~ 547 (737)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++..++ .+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777888888888877654221 357778888888888887764322 266788888886
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=5.2e-10 Score=101.90 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=43.7
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
++++++++.++.+|..+. ++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345555555555554332 4455555555544444332 4444445555554444333322333444444444444443
Q ss_pred ccccCccccCCCCCccEEEccCCC
Q 004686 482 NLVSFPKNVCLMKSLKILCLCGCL 505 (737)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~~~ 505 (737)
+.+..+..+..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 332222233344444444444433
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=3.6e-09 Score=111.07 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=119.7
Q ss_pred CCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCccc
Q 004686 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 521 (737)
Q Consensus 442 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 521 (737)
|..|.+|+.+.+.++ ........|..+.+|+.+.+..+ ....-...+..+..|+.+.+..+.. .+........+|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCc
Confidence 555556666655442 12222244555566666555542 2222223344555555554443211 1112222334555
Q ss_pred EEEccCccCcccC-cccccCCCCcEEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCC
Q 004686 522 ELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNL 600 (737)
Q Consensus 522 ~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 600 (737)
.+.+..+ ++.+. ..+..+..|+.+.+..+... .....+.+++.++.+......+
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~------------------------i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR------------------------IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE------------------------ECSCTTTTCTTCCEEEECSSEE
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcce------------------------eeccccccccccceeccCceee
Confidence 5555432 22222 12344555665555443211 1223467788888888765542
Q ss_pred CCCCccccccCCCCCCeEeCCCCCCcccc-hhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccc
Q 004686 601 LEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKL 679 (737)
Q Consensus 601 ~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~ 679 (737)
....+..+.+|+.+.+..+ ++.++ ..|.+|.+|+.++|.++ ++.++. -.+.+|.+|+.+.+..+
T Consensus 289 ----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 289 ----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK-------RSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp ----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCTTCCEECCCTT-
T ss_pred ----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH-------HhccCCCCCCEEEECcc-
Confidence 2234678899999999765 55554 36889999999988653 222221 13578999999977654
Q ss_pred cCCCCceEEEecCCCccccccccc
Q 004686 680 SRSPNIALNFLNCFKLVEDQVSKD 703 (737)
Q Consensus 680 ~~~~~~~~~~~~~~~L~~L~l~~n 703 (737)
........|.+|++|+.+.+..+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -ccEehHHHhhCCCCCCEEEECCC
Confidence 22222457899999999999765
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=8.6e-10 Score=100.78 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=34.5
Q ss_pred eeEEccCCccccccccccCCCCCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 403 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
+.++++++.++.+|..+. ++|+.|++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555555554432 4555555555544444332 4444445555554444332222233444444444444433
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.7e-09 Score=103.94 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=100.5
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
+++.+++..... +.++|+|++|+|||++|+.+++.+........++... +........+. +.........
T Consensus 27 ~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~----- 96 (226)
T 2chg_A 27 QRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVR-HKIKEFARTA----- 96 (226)
T ss_dssp HHHHHHHHTTCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHH-HHHHHHHTSC-----
T ss_pred HHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHH-HHHHHHhccc-----
Confidence 345556655432 2499999999999999999999764332222222210 22222222221 1111111000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCchh-hhh-cCcccEEEcCCCChhhH
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LKS-HGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~~-~~~-~~~~~~~~l~~l~~~~~ 157 (737)
....+++.+||+||++.. ...+.+...+.....+..+|+||+.... ... ......+++.+++.++.
T Consensus 97 ----------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~ 166 (226)
T 2chg_A 97 ----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (226)
T ss_dssp ----------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred ----------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHH
Confidence 011257899999999765 2344443333323456788888876431 111 12233789999999999
Q ss_pred HHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
.+++.+.+..... ...++..+.+++.++|+|..+.....
T Consensus 167 ~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 167 KKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999887632111 12345677888999999986554433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1.1e-09 Score=99.76 Aligned_cols=106 Identities=11% Similarity=-0.052 Sum_probs=78.1
Q ss_pred CCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccC
Q 004686 424 ELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 503 (737)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 503 (737)
..+.+++++|.+...+..+ .++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4577888888777655444 37788888888877766677788888888888888776654445567788888888888
Q ss_pred CCCCcccCcccCCCCcccEEEccCccCc
Q 004686 504 CLKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 504 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776655556777888888888887766
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.1e-09 Score=99.98 Aligned_cols=109 Identities=10% Similarity=-0.070 Sum_probs=74.7
Q ss_pred CcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCC
Q 004686 425 LKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC 504 (737)
Q Consensus 425 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 504 (737)
-+.++++++.+...+..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3677888777665554443 67888888887776666677777888888888877655443344567777777777777
Q ss_pred CCCcccCcccCCCCcccEEEccCccCcccCc
Q 004686 505 LKLEKLPQDLGEVECLEELDVGGTAIRQIPP 535 (737)
Q Consensus 505 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 535 (737)
.+.+..+..+..+++|++|++++|.+...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7665444457777777777777777664443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=1.5e-07 Score=98.71 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEccccCccCCCCCCCCCccce
Q 004686 583 RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELPPEIVF 661 (737)
Q Consensus 583 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~ 661 (737)
.+.++++|+.+.+..+.. ......+.+|++|+.+.+. +.++.++. .|.+|.+|+.+.|..+ ++.+..
T Consensus 260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~------- 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD------- 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------
T ss_pred eeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH-------
Confidence 356666777777654431 1123345566677777764 33444443 4666777777766543 111111
Q ss_pred eecccccccccccccccccCCCCceEEEecCCCccccccccchH
Q 004686 662 VGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 705 (737)
Q Consensus 662 l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 705 (737)
-.+.+|.+|+.+.+-.+ ........|.+|.+|+.+.+.++..
T Consensus 328 ~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred hHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 12456666666655432 1222234566777777777766543
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=6.5e-10 Score=114.96 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCCCcEEeccCCCCCCC---CccccccCCCCCCeEeCCCCCCcc-----cchhhhcCCCCCEEccccCc
Q 004686 587 LSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFS-----LPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 587 ~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~ 647 (737)
+++|++|+|++|.+.+. .+...+..+++|+.|+|++|.++. ++..+..+++|++|+|++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34455555555552110 112334444555555555555542 22234445556666666554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.79 E-value=2.5e-07 Score=97.02 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=124.7
Q ss_pred CCCeeEEccCCcccccc-ccccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCccccccccccccCccccceeccc
Q 004686 400 EKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (737)
.+|+.+.+..+ ++.+. ..|..+.+|+.+.+..+........+..+..|+.+.+..+ ....-...|. ...|+.+.+.
T Consensus 114 ~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 114 SELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp TTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEEC
T ss_pred ccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEecccccc-ccceeEEEEC
Confidence 34444444322 33443 3366777777777765432222233666777777777553 2211123333 2456666665
Q ss_pred cccccccCccccCCCCCccEEEccCCCCCcccCc-------------ccCCCCcccEEEccCccCcccC-cccccCCCCc
Q 004686 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-------------DLGEVECLEELDVGGTAIRQIP-PSIVQLVNLK 544 (737)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~ 544 (737)
.+ ........+..+.++.............-.. .+.....+..+.+.. .++.+. ..+..|.+|+
T Consensus 191 ~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 191 AK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLA 268 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred Cc-ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeeccccc
Confidence 42 2222233455556666555443221110000 011112233333322 122222 2355677777
Q ss_pred EEEccCCCCCCCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCC
Q 004686 545 IFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN 624 (737)
Q Consensus 545 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 624 (737)
.+.+..+... ..-..+.++++|+.+.+... ++......|.+|.+|+.++|..+
T Consensus 269 ~i~lp~~~~~------------------------I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 269 SVKMPDSVVS------------------------IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp EEECCTTCCE------------------------ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEecccccce------------------------ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-
Confidence 7777543311 11233667777887777532 22223345667778888887654
Q ss_pred Ccccc-hhhhcCCCCCEEccccCccCCCCCCCCCccceeecccccccccccccccccCCCCceEEEecCCCccccccccc
Q 004686 625 FFSLP-SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKD 703 (737)
Q Consensus 625 l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~~l~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 703 (737)
++.+. ..|.+|.+|+.+.|..+ ++.+.. -.+.+|++|+.+.+.++.... ..+..|.+|+.+.+..|
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~-------~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS--VTKIPE-------SAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT--CCBCCG-------GGGTTCTTCCEEEESSCHHHH----HTCBCCCCC--------
T ss_pred ccEehHhHhhCCCCCCEEEECcc--cCEEhH-------hHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCC
Confidence 55443 35777788888777543 222221 135677778777766542211 24567788888887766
Q ss_pred hHH
Q 004686 704 NLA 706 (737)
Q Consensus 704 ~~~ 706 (737)
.+.
T Consensus 389 ~~~ 391 (394)
T 4gt6_A 389 SID 391 (394)
T ss_dssp ---
T ss_pred CEE
Confidence 543
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=2.4e-10 Score=118.21 Aligned_cols=153 Identities=16% Similarity=0.065 Sum_probs=96.8
Q ss_pred CCCeeEEccCCccccc-----ccccc-CCCCCcEEecCCCcCCCCCC-C-CCCCCCCcEEeccCccccccccccc-----
Q 004686 400 EKLFKLNLCNSRIKYL-----WKGIK-PLKELKFMNLSHSCNLIRTP-D-FTGVPNLERLNLEGCTRLLEVHQSV----- 466 (737)
Q Consensus 400 ~~L~~L~l~~~~i~~l-----~~~~~-~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~----- 466 (737)
++|++|++++|.++.. ...+. ..++|+.|+|++|.+..... . ...+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3667777777776632 22222 23677788887776543211 1 2234567888888876544322222
Q ss_pred cCccccceeccccccccc----cCccccCCCCCccEEEccCCCCCcc----cCcccCCCCcccEEEccCccCc-----cc
Q 004686 467 GTLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIR-----QI 533 (737)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-----~l 533 (737)
...++|++|++++|.+.. .++..+...++|++|++++|.+... ++..+...++|++|++++|.++ .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 245678888888876543 2444456677888888888876542 2455666778888888888887 24
Q ss_pred CcccccCCCCcEEEccCCC
Q 004686 534 PPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~ 552 (737)
+..+..+++|++|++++|.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhCCCCCEEeccCCC
Confidence 4455567888888888876
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.8e-08 Score=102.68 Aligned_cols=170 Identities=19% Similarity=0.228 Sum_probs=98.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cC-ceEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
+.+.+++..+.. +.+.++|++|+|||++|+.+++.+... +. ..+++. ........ .++++...+.....
T Consensus 31 ~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~i~~~~~~~~~~~~-- 101 (323)
T 1sxj_B 31 DRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGID-VVRNQIKHFAQKKL-- 101 (323)
T ss_dssp HHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHH-HHHTHHHHHHHBCC--
T ss_pred HHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChH-HHHHHHHHHHhccc--
Confidence 345556655432 239999999999999999999976432 22 233333 22222222 22222222110000
Q ss_pred ccchhhhHHHHHHHh-cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCCh
Q 004686 80 IWDVHKGINLIRWRL-CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDY 154 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~ 154 (737)
.+ .+++.++|+||++.. ...+.+...+.....+..+|+||+... +... .+....+++.+++.
T Consensus 102 -------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~ 168 (323)
T 1sxj_B 102 -------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168 (323)
T ss_dssp -------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred -------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCH
Confidence 01 356899999999764 233333333322346678888887642 1111 12234799999999
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
++..+++.+.+..... ...++..+.+++.++|.|..+..
T Consensus 169 ~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 169 EDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp HHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999876532111 12345678899999999965443
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=3.7e-08 Score=100.60 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=99.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc-C-ceEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
+.+..++..+.. +.+.++|++|+|||++|+.++..+.... . ..+.+. .+...... ..++.........
T Consensus 35 ~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~--- 104 (327)
T 1iqp_A 35 KRLKHYVKTGSM--PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDERGIN-VIREKVKEFARTK--- 104 (327)
T ss_dssp HHHHHHHHHTCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTCHHHHH-TTHHHHHHHHHSC---
T ss_pred HHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccccCchH-HHHHHHHHHHhhC---
Confidence 345566665432 2499999999999999999999764322 1 122322 11100000 0111111100000
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCchh-hhhc-CcccEEEcCCCChh
Q 004686 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LKSH-GVTNTYKVRGLDYV 155 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~~-~~~~-~~~~~~~l~~l~~~ 155 (737)
....+++.++|+|+++.. ...+.+...+.....+.++|+||..... .... .....+++.+++++
T Consensus 105 ------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~ 172 (327)
T 1iqp_A 105 ------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 172 (327)
T ss_dssp ------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHH
T ss_pred ------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHH
Confidence 011256889999999765 3344444433333467788888876421 1111 11237899999999
Q ss_pred hHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+..+++.+.+.... ....++..+.|++.++|.|..+.....
T Consensus 173 ~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 173 DIAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999988763322 223446778899999999987655444
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3e-08 Score=102.23 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=45.3
Q ss_pred EEccCC-ccccccccccCCCCCcEEecCC-CcCCCCCCC-CCCCCCCcEEeccCccccccccccccCccccceecccccc
Q 004686 405 LNLCNS-RIKYLWKGIKPLKELKFMNLSH-SCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (737)
Q Consensus 405 L~l~~~-~i~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (737)
++++++ +++.+|. +..+.+|+.|+|++ |.+...++. |..+++|++|+|++|.+.+..|..|..+++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 4444544 44455555555543 444433332 4445555555555554444444444555555555555544
Q ss_pred ccccCccccCCCCCccEEEccCCCC
Q 004686 482 NLVSFPKNVCLMKSLKILCLCGCLK 506 (737)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (737)
+.+..+..+..++ |+.|++.+|.+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCc
Confidence 3322222222222 55555555444
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.67 E-value=1.1e-07 Score=96.66 Aligned_cols=171 Identities=12% Similarity=0.104 Sum_probs=99.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc-ccCc-eEEEeecchhhcccChHHHHHHHHHHHhhcccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 80 (737)
.+.+++..+ ..+.+.++|++|+|||++|+.++..+.. .+.. .+.+... .......+.+...+.... .
T Consensus 28 ~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~---- 96 (319)
T 2chq_A 28 RLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-DERGIDVVRHKIKEFART----A---- 96 (319)
T ss_dssp HHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT-STTCTTTSSHHHHHHHHS----C----
T ss_pred HHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc-cccChHHHHHHHHHHHhc----C----
Confidence 344444443 2234899999999999999999997632 2221 2333311 000111111111111100 0
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhh
Q 004686 81 WDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVE 156 (737)
Q Consensus 81 ~~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~ 156 (737)
..-.+++.++|+|+++... ..+.+...+.....+..+|+||.... +... ......+++.+++.++
T Consensus 97 -----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 165 (319)
T 2chq_A 97 -----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEA 165 (319)
T ss_dssp -----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHH
T ss_pred -----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHH
Confidence 0012567899999997653 35556655554456777888776542 1111 1223479999999999
Q ss_pred HHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
..+++.+.+.... ....++..+.+++.++|.+..+....
T Consensus 166 ~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 166 MKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHHHHHHHTTC--CCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999988764322 12344667888899999997655443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=8.3e-08 Score=98.86 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=71.6
Q ss_pred EEecCCC-cCCCCCCCCCCCCCCcEEeccC-ccccccccccccCccccceeccccccccccCccccCCCCCccEEEccCC
Q 004686 427 FMNLSHS-CNLIRTPDFTGVPNLERLNLEG-CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC 504 (737)
Q Consensus 427 ~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 504 (737)
.++++++ .+...+. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..|..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 5555554 77777788888875 6655555567778888888888887776666666777888888888887
Q ss_pred CCCcccCcccCCCCcccEEEccCccCc
Q 004686 505 LKLEKLPQDLGEVECLEELDVGGTAIR 531 (737)
Q Consensus 505 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (737)
.+.+..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77654444444444 778887777766
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=3.3e-08 Score=101.18 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=84.3
Q ss_pred CccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcc-cCcccc--cCCCCcEEEccCCCCCCCcCccch
Q 004686 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIV--QLVNLKIFSLHGCKGQPPKILSSN 562 (737)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 562 (737)
++..+..+++|+.|++++|... .++. + .+++|++|++..+.++. ....+. .+++|+.|+++.+...........
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344456677777777766322 2232 3 26778888887776651 112232 578888888753210000000000
Q ss_pred hhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccc---cCCCCCCeEeCCCCCCcc-----cchhhhc
Q 004686 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI---GSLFSLEAIDLSGNNFFS-----LPSSINQ 634 (737)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~n~l~~-----lp~~l~~ 634 (737)
.....-....+++|+.|.+++|.+.. ..+..+ ..+++|++|+|+.|.++. ++..+..
T Consensus 241 --------------~l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 241 --------------VFRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305 (362)
T ss_dssp --------------GTGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred --------------HHHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence 00001111357899999999888432 222222 357899999999998873 4445577
Q ss_pred CCCCCEEccccCccC
Q 004686 635 LLKLKILCLEKCRNL 649 (737)
Q Consensus 635 l~~L~~L~l~~n~~~ 649 (737)
+++|+.|+|++|...
T Consensus 306 l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 306 IKHLKFINMKYNYLS 320 (362)
T ss_dssp HTTCSEEECCSBBCC
T ss_pred CCcceEEECCCCcCC
Confidence 899999999988743
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=4.7e-06 Score=86.78 Aligned_cols=280 Identities=12% Similarity=0.113 Sum_probs=149.5
Q ss_pred CceEEEEEecCCcccccChhhhhcCCCCceEEEcccccCCCcccccc--CcceeeeecCCCCCCCCC-CCCCCCeeEEcc
Q 004686 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN--NLRYLKWHEYPFNSLPVS-FRPEKLFKLNLC 408 (737)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~~~~~~~~l~~~-~~~~~L~~L~l~ 408 (737)
...++++.+.. .+..+...+|.+|.+|+.+.+..+ ++......+. ++..+.+.. .++.+... +...+|+.+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCC
Confidence 44667777753 678888999999999999999653 3322222222 333333322 23333322 233467777765
Q ss_pred CCccccccc-cccCCCCCcEEecCCCcCCCCCCCCCCCCCCcEEeccCcccccc------------ccccccCcccccee
Q 004686 409 NSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE------------VHQSVGTLKRLILL 475 (737)
Q Consensus 409 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~~~l~~L~~L 475 (737)
.+ +..+.. .|.++ +|+.+.+..+-.......+..+.+++.+.+..+..... ....+..+..+..+
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred Cc-cccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 43 333332 24433 45555555442222222355666666666654321110 11122223333333
Q ss_pred ccccccccccCccccCCCCCccEEEccCCCCCcccCcccCCCCcccEEEccCccCcccCc-ccccCCCCcEEEccCCCCC
Q 004686 476 NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQ 554 (737)
Q Consensus 476 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 554 (737)
.+... ........+..+.+|+.+.+..+ ........+..+.+|+.+.+..+ ++.+.. .+..+.+|+.+.+..+-..
T Consensus 200 ~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~ 276 (379)
T 4h09_A 200 TIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKT 276 (379)
T ss_dssp ECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSE
T ss_pred ccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccccee
Confidence 33321 11122233445566666666442 22222344556677777777554 444432 3445667777766443211
Q ss_pred CCcCccchhhhcccCCCCCCCCccccCCCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhh
Q 004686 555 PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SIN 633 (737)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~ 633 (737)
.....+.+|++|+.+.+.++.+ +......|.+|.+|+.+.|..+ ++.+.. .|.
T Consensus 277 ------------------------i~~~aF~~c~~L~~i~l~~~~i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 277 ------------------------VPYLLCSGCSNLTKVVMDNSAI-ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp ------------------------ECTTTTTTCTTCCEEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ------------------------cccccccccccccccccccccc-ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 1223477888899998887763 3233456778888999888654 555543 577
Q ss_pred cCCCCCEEcccc
Q 004686 634 QLLKLKILCLEK 645 (737)
Q Consensus 634 ~l~~L~~L~l~~ 645 (737)
+|++|+.+.+..
T Consensus 331 ~C~~L~~i~ip~ 342 (379)
T 4h09_A 331 NCKALSTISYPK 342 (379)
T ss_dssp TCTTCCCCCCCT
T ss_pred CCCCCCEEEECC
Confidence 888888877654
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.61 E-value=4.1e-07 Score=92.61 Aligned_cols=236 Identities=16% Similarity=0.061 Sum_probs=125.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+.|.|+|++|+|||++|+.+++..... .+++. +.......++ ... +.+.+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~~~l----~~~------------------l~~~~ 88 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKPGDL----AAI------------------LANSL 88 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSHHHH----HHH------------------HTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCChHHH----HHH------------------HHHhc
Confidence 3578999999999999999999876422 23433 2222211111 111 00001
Q ss_pred cCCeEEEEEcCCCChH--HHHHHhcCCCCC------------------CCCcEEEEEeCCch-hhhh--cCcccEEEcCC
Q 004686 95 CRKRVLVILDDVDQLE--QLQALVGNHDWF------------------GFGSRIIITSRDEH-VLKS--HGVTNTYKVRG 151 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~--~~~~l~~~l~~~------------------~~~~~iliTtR~~~-~~~~--~~~~~~~~l~~ 151 (737)
.++.+|++|+++... ..+.+...+... .+...+|.||.... +... .+....+++.+
T Consensus 89 -~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~ 167 (324)
T 1hqc_A 89 -EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 167 (324)
T ss_dssp -CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCC
T ss_pred -cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCC
Confidence 355689999997753 222222111100 12345666666432 2111 12335789999
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHhcC---------CCHHHHHHHHHHHhcCCchh
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG---------RSVEEWKSALNRLQEAPNEK 222 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~~l~~---------~~~~~~~~~~~~~~~~~~~~ 222 (737)
++.++..+++.+.+.... ....++..+.+++.++|+|..+..+...+.. -+.+........
T Consensus 168 ~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-------- 237 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA-------- 237 (324)
T ss_dssp CCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------
Confidence 999999999988763322 1233466788999999999888776654432 122222222222
Q ss_pred HHHHHHhhhcCCChhhHhhhheee-cccC-CCCHHHHHHhhhcCCCCc---hh-hHHHHhhcccceeecCEEeHhHHHHH
Q 004686 223 VLKVLRISYDGLDRRDKEIFLDIA-CFFK-GKDEDRVRKKLDSCGFNS---DI-GIRELLDKSLITIVNNKLWMHDLLQE 296 (737)
Q Consensus 223 ~~~~~~~s~~~L~~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~---~~-~l~~L~~~~l~~~~~~~~~~h~l~~~ 296 (737)
+......+++..+..+..+. .+.+ ......+.+.+ |... .. .-+.+++.+++.........-+...+
T Consensus 238 ----~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 238 ----LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp ----HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred ----hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHH
Confidence 12223445555555554433 2222 23344444443 3222 11 23337788888876544444444443
Q ss_pred H
Q 004686 297 M 297 (737)
Q Consensus 297 ~ 297 (737)
+
T Consensus 311 ~ 311 (324)
T 1hqc_A 311 H 311 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=1.4e-08 Score=98.80 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=89.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+.++|+|++|+|||++|+.++.........+.|+. +...... + .... +.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~----~~~~~~~------~---------------~~~~----~~ 101 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP----LGIHASI------S---------------TALL----EG 101 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----GGGGGGS------C---------------GGGG----TT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----HHHHHHH------H---------------HHHH----Hh
Confidence 3468999999999999999999997765444556665 2111000 0 0000 01
Q ss_pred hcCCeEEEEEcCCCChHH----HHHHhcCCCCC-CCCc-EEEEEeCCchh---------hhhcCcccEEEcCCCChhhHH
Q 004686 94 LCRKRVLVILDDVDQLEQ----LQALVGNHDWF-GFGS-RIIITSRDEHV---------LKSHGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~----~~~l~~~l~~~-~~~~-~iliTtR~~~~---------~~~~~~~~~~~l~~l~~~~~~ 158 (737)
+ .++-+||+||++.... .+.+...+... ..+. .+|+||+...- ...+.....+++.+++.++..
T Consensus 102 ~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 102 L-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp G-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred c-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 1 3456899999865421 22222211100 1222 47777774321 111112257999999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+++.+.+.... ....++..+.+++.++|.+..+..+..
T Consensus 181 ~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 181 AALQRRAAMRG--LQLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHHTT--CCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 99988763211 123346677888999998876665433
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=4.7e-08 Score=99.99 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=32.6
Q ss_pred CCCCccEEEccCCCCCcccCccc---CCCCcccEEEccCccCcc-----cCcccccCCCCcEEEccCCC
Q 004686 492 LMKSLKILCLCGCLKLEKLPQDL---GEVECLEELDVGGTAIRQ-----IPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~ 552 (737)
.+++|+.|++.+|.+....+..+ ..+++|++|+++.|.++. ++..+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35566666666655543221111 235666666666666652 33334456666666666553
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.4e-06 Score=86.38 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=86.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccC-------ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-------ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 85 (737)
+..+.+.|+|++|+|||++++.++.++..... ..+++. +....+..++...|++++..... .......
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~~~~I~~~L~g~~~-~~~~~~~ 117 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDALYEKIWFAISKENL-CGDISLE 117 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHHHHHHHHHHSCCC---CCCCHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHHHHHHHHHhcCCCC-CchHHHH
Confidence 34568999999999999999999997754321 245555 55556777888888888754321 1112222
Q ss_pred hHHHHHHHh---cCCeEEEEEcCCCChH---HHHHHhcCCCCCCCCcEEEEEeCCchh-----hhhc--Ccc-cEEEcCC
Q 004686 86 GINLIRWRL---CRKRVLVILDDVDQLE---QLQALVGNHDWFGFGSRIIITSRDEHV-----LKSH--GVT-NTYKVRG 151 (737)
Q Consensus 86 ~~~~l~~~l---~~~~~LlilDd~~~~~---~~~~l~~~l~~~~~~~~iliTtR~~~~-----~~~~--~~~-~~~~l~~ 151 (737)
.+..+.+.+ +++++++++|+++... .+-.+............||.++..... .... +.. ..+.+.+
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~p 197 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNK 197 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCC
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCC
Confidence 333333433 4678999999997652 222222100001112233333433211 1111 121 3689999
Q ss_pred CChhhHHHHHhhhc
Q 004686 152 LDYVEALQLFHLKV 165 (737)
Q Consensus 152 l~~~~~~~l~~~~~ 165 (737)
++.+|..+++.+++
T Consensus 198 Yt~~el~~Il~~Rl 211 (318)
T 3te6_A 198 VDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999886
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=2.3e-07 Score=96.64 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=99.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---ccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DLI 79 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~ 79 (737)
.+..++..+. ....+.|+|++|+|||++|+.++..+...... .... +.... .+..+......+. ...
T Consensus 27 ~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~ 96 (373)
T 1jr3_A 27 ALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATP----CGVCD----NCREIEQGRFVDLIEIDAA 96 (373)
T ss_dssp HHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-CSSC----CSSSH----HHHHHHTSCCSSCEEEETT
T ss_pred HHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCC----CcccH----HHHHHhccCCCceEEeccc
Confidence 4455555432 23478999999999999999999876432211 0000 11100 0111111000000 000
Q ss_pred ccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcC
Q 004686 80 IWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVR 150 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l-----~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~ 150 (737)
.....+....+.+.+ .+++.++|+|+++.. ...+.+...+.....+..+|++|.... +... ......+++.
T Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 176 (373)
T 1jr3_A 97 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 (373)
T ss_dssp CSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred ccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCC
Confidence 000011123333333 246789999999754 334455444433345667777776432 1111 1223578999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
+++.++..+++.+.+.... ....++..+.|++.++|.|..+.....
T Consensus 177 ~l~~~~~~~~l~~~~~~~~--~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999987653211 112345677899999999987765543
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.50 E-value=1.1e-06 Score=91.27 Aligned_cols=190 Identities=13% Similarity=0.022 Sum_probs=98.4
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc--------
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-------- 76 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-------- 76 (737)
.+.+..+....+.++|+|++|+|||++|+.++........ .+.+....-++......+...+.........
T Consensus 60 ~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (368)
T 3uk6_A 60 LEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHT 138 (368)
T ss_dssp HHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------C
T ss_pred HHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhhhcccchhHHHHHHHHHHHHHHhhhhcccc
Confidence 3344444333468999999999999999999998754322 1222221112222333333333333211100
Q ss_pred -------------c-------cc----ccchhhhHHHHHHH--hcCC----eEEEEEcCCCChH--HHHHHhcCCCCCCC
Q 004686 77 -------------D-------LI----IWDVHKGINLIRWR--LCRK----RVLVILDDVDQLE--QLQALVGNHDWFGF 124 (737)
Q Consensus 77 -------------~-------~~----~~~~~~~~~~l~~~--l~~~----~~LlilDd~~~~~--~~~~l~~~l~~~~~ 124 (737)
. .. ..+........... ..++ +.+|++|+++... ....+...+.+...
T Consensus 139 ~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~ 218 (368)
T 3uk6_A 139 VSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMA 218 (368)
T ss_dssp EEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTC
T ss_pred ccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCC
Confidence 0 00 00111111111111 1133 3599999997663 34445444433233
Q ss_pred CcEEEEEeCC------------c-hhhh-hcCcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhC-CC
Q 004686 125 GSRIIITSRD------------E-HVLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG-GL 189 (737)
Q Consensus 125 ~~~iliTtR~------------~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-G~ 189 (737)
. .++++|.. . .+.. ..+....+.+++++.++..+++..++.... .....+..+.+++.+. |.
T Consensus 219 ~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~~~~~~l~~l~~~~~~G~ 295 (368)
T 3uk6_A 219 P-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VEMSEDAYTVLTRIGLETS 295 (368)
T ss_dssp C-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHSC
T ss_pred C-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCC
Confidence 3 44444431 1 1111 112223579999999999999998763221 2234456778888888 88
Q ss_pred chHHHHHHH
Q 004686 190 PLAIEVLGS 198 (737)
Q Consensus 190 Pl~i~~~a~ 198 (737)
|..+..+..
T Consensus 296 ~r~~~~ll~ 304 (368)
T 3uk6_A 296 LRYAIQLIT 304 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876654433
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.49 E-value=1.1e-07 Score=100.38 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=94.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccC--ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...++|+|++|+|||++|+.++..+...+. .++++. +. ++..++...+... ....+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~~------~~~~~~~~~~~~~----------~~~~~~~ 189 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----SE------KFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----HH------HHHHHHHHHHHTT----------CHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----HH------HHHHHHHHHHHcc----------cHHHHHH
Confidence 568999999999999999999997755542 234444 21 1233333332211 1223334
Q ss_pred HhcCCeEEEEEcCCCChH----HHHHHhcCCCC-CCCCcEEEEEeCCchh---------hhhcCcccEEEcCCCChhhHH
Q 004686 93 RLCRKRVLVILDDVDQLE----QLQALVGNHDW-FGFGSRIIITSRDEHV---------LKSHGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~----~~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~l~~~~~~ 158 (737)
.+..+.-+|++||++... ..+.+...+.. ...|..||+||..... ...+.....+++++++.++..
T Consensus 190 ~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 190 KYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_dssp HHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHH
T ss_pred HhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHH
Confidence 444367799999995432 12222222110 1356778888886321 111222246889999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+++.+.+..... ...++..+.|++.++|.+..+.-+
T Consensus 270 ~iL~~~~~~~~~--~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 270 SIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHHTC--CCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 999887632111 112245677888889988665544
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.45 E-value=3.4e-06 Score=83.22 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
....+.+.|+|++|+|||++|+.++...... .+.+....... ........ ......+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~~~~~~-g~~~~~~~------------------~~~~~~~~ 118 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICSPDKMI-GFSETAKC------------------QAMKKIFD 118 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEECGGGCT-TCCHHHHH------------------HHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeCHHHhc-CCchHHHH------------------HHHHHHHH
Confidence 4556899999999999999999999975322 22222111000 00000000 01111222
Q ss_pred HHhcCCeEEEEEcCCCCh------------HHHHHHhcCCCC---CCCCcEEEEEeCCchhhhh----cCcccEEEcCCC
Q 004686 92 WRLCRKRVLVILDDVDQL------------EQLQALVGNHDW---FGFGSRIIITSRDEHVLKS----HGVTNTYKVRGL 152 (737)
Q Consensus 92 ~~l~~~~~LlilDd~~~~------------~~~~~l~~~l~~---~~~~~~iliTtR~~~~~~~----~~~~~~~~l~~l 152 (737)
.....+..+|++|+++.. ..++.+...+.. .+....||.||........ .+....+.++++
T Consensus 119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 233467899999998653 113333332221 2233446666766533222 122457889999
Q ss_pred Ch-hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 153 DY-VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 153 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
++ ++..+++.+.. . ...+....+++.+.|.
T Consensus 199 ~~r~~i~~i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 199 ATGEQLLEALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEHHHHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 88 66666666532 1 1234567788888884
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.43 E-value=2.3e-06 Score=86.92 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=92.3
Q ss_pred HhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhh
Q 004686 6 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (737)
Q Consensus 6 ~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 85 (737)
.++.........++|+|++|+|||++|+.++......-..++++. + .++..++...+...
T Consensus 28 ~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~~~~~~~~~---------- 87 (324)
T 1l8q_A 28 EALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQAMVEHLKKG---------- 87 (324)
T ss_dssp HHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHHHHHHHHHT----------
T ss_pred HHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHHHHHHHHcC----------
Confidence 344433224567999999999999999999997654323345554 2 12223333332110
Q ss_pred hHHHHHHHhcCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCcEEEEEeCCchh---------hhhcCcccEEEcCC
Q 004686 86 GINLIRWRLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDEHV---------LKSHGVTNTYKVRG 151 (737)
Q Consensus 86 ~~~~l~~~l~~~~~LlilDd~~~~~---~-~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~ 151 (737)
....+.+.+ .+.-+|++|+++... . .+.+...+.. ...+..+++|+..... ...+.....+++++
T Consensus 88 ~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 88 TINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp CHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred cHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 112222223 236699999986543 1 1222211110 1245678888764311 11122224689999
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+.++..+++...+.... ....++..+.|++.+ |....+..
T Consensus 167 -~~~e~~~il~~~~~~~~--~~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 167 -DNKTRFKIIKEKLKEFN--LELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp -CHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHC-SSHHHHHH
T ss_pred -CHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhC-CCHHHHHH
Confidence 99999999988763211 122345677888888 88765443
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.39 E-value=3.8e-06 Score=85.36 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=93.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc---c----ccccchhhhH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---D----LIIWDVHKGI 87 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~----~~~~~~~~~~ 87 (737)
...+.++|+.|+|||++|+.++..+....... ... |.... .++.+......+. . ......+. +
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~----c~~c~----~c~~~~~~~~~d~~~~~~~~~~~~~~i~~-i 93 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS----CGHCR----GCQLMQAGTHPDYYTLAPEKGKNTLGVDA-V 93 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC----CSCSH----HHHHHHHTCCTTEEEECCCTTCSSBCHHH-H
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC----CCCCH----HHHHHhcCCCCCEEEEeccccCCCCCHHH-H
Confidence 45799999999999999999999764322110 000 11110 0111111100000 0 00011111 2
Q ss_pred HHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhHH
Q 004686 88 NLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEAL 158 (737)
Q Consensus 88 ~~l~~~l-----~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~~ 158 (737)
..+.+.+ .+++-++|+|+++... ..++++..+-..+.+..+|++|.... +... .+....++++++++++..
T Consensus 94 r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 94 REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAV 173 (334)
T ss_dssp HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHH
Confidence 2222332 2467899999997653 35555554443345677777776542 2221 123347999999999999
Q ss_pred HHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+++.+.. ...++.++.+++.++|.|..+...
T Consensus 174 ~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 174 TWLSREV-------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred HHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9998775 112345678899999999765433
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.9e-06 Score=88.83 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=96.7
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc--ccCc-eEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--QFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
.+..++..+... .+.++|++|+|||++|+.++..+.. .+.. ++.+. ++...... .+++............
T Consensus 48 ~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~ 120 (353)
T 1sxj_D 48 VLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGIS-IVREKVKNFARLTVSK 120 (353)
T ss_dssp HHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHH-HHTTHHHHHHHSCCCC
T ss_pred HHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchH-HHHHHHHHHhhhcccc
Confidence 444555543222 3899999999999999999987542 1222 22232 22112222 2222222211110000
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCch-hhhhc-CcccEEEcCCCChh
Q 004686 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKSH-GVTNTYKVRGLDYV 155 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~ 155 (737)
. ... .....-.+++-++++|+++... ....+...+.......++|++|.... +.... .....+++.+++.+
T Consensus 121 ~--~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~ 195 (353)
T 1sxj_D 121 P--SKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDAS 195 (353)
T ss_dssp C--CTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHH
T ss_pred c--chh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHH
Confidence 0 000 0001112456799999986542 23344333322244567777775432 21111 12237899999999
Q ss_pred hHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
+..+++.+.+.... ....++..+.|++.++|.|..+...
T Consensus 196 ~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 196 NAIDRLRFISEQEN--VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHHTTT--CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999988763322 1233467788999999999865544
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.35 E-value=3.1e-06 Score=85.59 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH-
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 93 (737)
.+-|.++|++|+|||++|+.++...... .+.+. +. + +.... ....+..+..+.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~----~~------~----l~~~~-------~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST---FFSVS----SS------D----LVSKW-------MGESEKLVKQLFAMA 106 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE----HH------H----HHTTT-------GGGHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc----hH------H----Hhhcc-------cchHHHHHHHHHHHH
Confidence 4679999999999999999999976432 22332 11 0 10000 00111122222222
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCCC---CCCCCcEEEEEeCCchhhh-h--cCcccEEEcCCCCh
Q 004686 94 LCRKRVLVILDDVDQLE-------------QLQALVGNHD---WFGFGSRIIITSRDEHVLK-S--HGVTNTYKVRGLDY 154 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------------~~~~l~~~l~---~~~~~~~iliTtR~~~~~~-~--~~~~~~~~l~~l~~ 154 (737)
...++.+|++|+++... ....++..+. ....+..||.||....... . .+....+.++..+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence 23567899999996441 1222222221 1234555666666532111 1 13445788899999
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC-chHHHHHHH
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~a~ 198 (737)
++..+++...+..... .......+.|++.+.|. +..|..++.
T Consensus 187 ~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 187 AARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999987743221 12234567788888774 445554443
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.35 E-value=1.2e-06 Score=89.58 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred hhHHhhhcC---CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc
Q 004686 3 KMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (737)
Q Consensus 3 ~l~~~l~~~---~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 79 (737)
++..++... ....+.|.|+|++|+|||++|+.++.+.... .+.+. +.......++.
T Consensus 40 ~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~----~~~~~~~~~~~-------------- 98 (338)
T 3pfi_A 40 NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IKTTA----APMIEKSGDLA-------------- 98 (338)
T ss_dssp HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEE----GGGCCSHHHHH--------------
T ss_pred HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEec----chhccchhHHH--------------
Confidence 344555431 3344578999999999999999998875433 22332 21111111110
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCC------------------CCCcEEEEEeCCch-hh
Q 004686 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWF------------------GFGSRIIITSRDEH-VL 138 (737)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~~~LlilDd~~~~~--~~~~l~~~l~~~------------------~~~~~iliTtR~~~-~~ 138 (737)
..... ..+..+|++|+++... ....+...+.+. .++..+|.+|.... +.
T Consensus 99 ---------~~~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 99 ---------AILTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp ---------HHHHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred ---------HHHHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 01111 2456789999987552 222222211110 11345665555432 11
Q ss_pred hh--cCcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHHH
Q 004686 139 KS--HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 139 ~~--~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
.. .+....+++.+++.++..+++.+.+... .....++..+.+++.+.|+|..+..+..
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKL--NKTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 11 1334579999999999999998776322 1223446677888899999976655443
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=5.9e-07 Score=83.59 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
++.+++.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 33 ~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 33 RTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444443 23456899999999999999999997643
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=3.1e-06 Score=91.48 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=87.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH-
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW- 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~- 92 (737)
..+.+.|+|++|+|||++|+.++.... + .++.+. ++..... ............. ...........+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~--~-~~i~in----~s~~~~~-~~~~~~i~~~~~~-----~~~~~~~~~~~~~ 142 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG--Y-DILEQN----ASDVRSK-TLLNAGVKNALDN-----MSVVGYFKHNEEA 142 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT--C-EEEEEC----TTSCCCH-HHHHHTGGGGTTB-----CCSTTTTTC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--C-CEEEEe----CCCcchH-HHHHHHHHHHhcc-----ccHHHHHhhhhhh
Confidence 347899999999999999999999762 1 223333 2222222 1222222111100 001110100000
Q ss_pred -HhcCCeEEEEEcCCCChH-----HHHHHhcCCCCCCCCcEEEEEeCCch---hhhhcCcccEEEcCCCChhhHHHHHhh
Q 004686 93 -RLCRKRVLVILDDVDQLE-----QLQALVGNHDWFGFGSRIIITSRDEH---VLKSHGVTNTYKVRGLDYVEALQLFHL 163 (737)
Q Consensus 93 -~l~~~~~LlilDd~~~~~-----~~~~l~~~l~~~~~~~~iliTtR~~~---~~~~~~~~~~~~l~~l~~~~~~~l~~~ 163 (737)
...+++.+||+|+++... .+..+...+. ..+..||+++.... +....+....+++++++.++..+++.+
T Consensus 143 ~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 143 QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMT 220 (516)
T ss_dssp CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHH
T ss_pred hhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHH
Confidence 123578899999996541 1223322221 12334555554422 222223344789999999999999977
Q ss_pred hccCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 004686 164 KVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 196 (737)
.+..... ...++..+.|++.++|.+..+..+
T Consensus 221 i~~~~~~--~i~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 221 IAIREKF--KLDPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp HHHHHTC--CCCTTHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 6532111 112245778899999966554433
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=3e-06 Score=87.38 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhhHHHHHhhhccCCCCC
Q 004686 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 171 (737)
+++-++|+|+++.... .+++...+.....+..+|++|.... +... .+....+++++++.++..+++.+.+....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-- 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-- 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC--
Confidence 4677999999976532 3333333322245677887777532 2221 12235789999999999999987653211
Q ss_pred ChHH-HHHHHHHHHHhCCCchHHHHHHH
Q 004686 172 TDYR-VELSKYVVNYAGGLPLAIEVLGS 198 (737)
Q Consensus 172 ~~~~-~~~~~~i~~~~~G~Pl~i~~~a~ 198 (737)
.... ++.++.|++.++|.+..+.....
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1122 35677899999999876655443
No 185
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=8.3e-06 Score=81.07 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=84.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHH-HH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI-RW 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~ 92 (737)
..+-+.|+|++|+|||++|+.++...... .+.+... ... .....+ .......+ ..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~~-~~~-~~~~~~-------------------~~~~~~~~~~~ 105 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVGS-ELV-KKFIGE-------------------GASLVKDIFKL 105 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEGG-GGC-CCSTTH-------------------HHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehH-HHH-Hhccch-------------------HHHHHHHHHHH
Confidence 34569999999999999999999876432 2222211 110 000000 01111111 12
Q ss_pred HhcCCeEEEEEcCCCCh----------------HHHHHHhcCCC--CCCCCcEEEEEeCCchhhh-----hcCcccEEEc
Q 004686 93 RLCRKRVLVILDDVDQL----------------EQLQALVGNHD--WFGFGSRIIITSRDEHVLK-----SHGVTNTYKV 149 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~----------------~~~~~l~~~l~--~~~~~~~iliTtR~~~~~~-----~~~~~~~~~l 149 (737)
....++.+|++|+++.. ..+..+...+. ....+..||.||....... ..+....+.+
T Consensus 106 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~ 185 (285)
T 3h4m_A 106 AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185 (285)
T ss_dssp HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEEC
T ss_pred HHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEE
Confidence 22356689999999654 11222222211 1134556777776542211 1134447899
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC-CchHHHHH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVL 196 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~ 196 (737)
+..+.++..+++...........+ .....+++.+.| .|..+..+
T Consensus 186 ~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 186 PAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999887643221111 124567777777 45455544
No 186
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.28 E-value=7.6e-06 Score=86.08 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=91.6
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccch
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 83 (737)
+...+..+. .+.+.|+|++|+|||++|+.++......|. .+. . ......+ ++++.....
T Consensus 41 L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~----a-~~~~~~~-ir~~~~~a~---------- 99 (447)
T 3pvs_A 41 LPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE---RIS----A-VTSGVKE-IREAIERAR---------- 99 (447)
T ss_dssp HHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE----T-TTCCHHH-HHHHHHHHH----------
T ss_pred HHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE----e-ccCCHHH-HHHHHHHHH----------
Confidence 444455433 368999999999999999999997643321 111 1 1122222 122221100
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEE-EeCCch--hhh-hcCcccEEEcCCCChhhH
Q 004686 84 HKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIII-TSRDEH--VLK-SHGVTNTYKVRGLDYVEA 157 (737)
Q Consensus 84 ~~~~~~l~~~l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~ili-TtR~~~--~~~-~~~~~~~~~l~~l~~~~~ 157 (737)
.....+++.+|++|+++.... .+.++..+.. ....+|. ||.+.. +.. ..+...++.+.+++.++.
T Consensus 100 -------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi 170 (447)
T 3pvs_A 100 -------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170 (447)
T ss_dssp -------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred -------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence 011146789999999976532 2222222221 2234444 444432 111 122334788999999999
Q ss_pred HHHHhhhccCCC-----CCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 158 LQLFHLKVSNGK-----QPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 158 ~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
.+++.+...... .......+..+.+++.++|.+..+..+.
T Consensus 171 ~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 171 EQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 999988763311 2223455677888899999887655443
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.28 E-value=1.4e-05 Score=80.63 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=86.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH-
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 93 (737)
.+-|.++|++|+|||++|+.++...... ..+.+....-.+... ...+..+..+.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~~l~~~~~---------------------g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSSDLVSKWL---------------------GESEKLVKNLFQLA 101 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECCSSCCSSC---------------------CSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhHHHHhhhh---------------------hHHHHHHHHHHHHH
Confidence 4689999999999999999999976211 122222110010000 0111112222222
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCCC---CCCCCcEEEEEeCCch-hhhh--cCcccEEEcCCCCh
Q 004686 94 LCRKRVLVILDDVDQLE-------------QLQALVGNHD---WFGFGSRIIITSRDEH-VLKS--HGVTNTYKVRGLDY 154 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------------~~~~l~~~l~---~~~~~~~iliTtR~~~-~~~~--~~~~~~~~l~~l~~ 154 (737)
...++.+|++|+++... ....++..+. ....+..||.||.... +... .+....+.++..+.
T Consensus 102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCH
T ss_pred HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCH
Confidence 23567899999997551 1222222221 1123445555565432 1111 14455788999999
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC-chHHHHHHH
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~a~ 198 (737)
++..+++......... .......+.|++.+.|. +..|..++.
T Consensus 182 ~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999887633221 11234567888888887 444555444
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.26 E-value=1.7e-05 Score=77.75 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=84.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccC-hHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG-LVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
..+-|.|+|++|+|||++|+.++...... .+.+. +..... .... ........+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~ 93 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMA----GAEFVEVIGGL-----------------GAARVRSLFKE 93 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEE----TTTTSSSSTTH-----------------HHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEec----hHHHHhhccCh-----------------hHHHHHHHHHH
Confidence 34678999999999999999999976432 23333 111100 0000 00011111222
Q ss_pred HhcCCeEEEEEcCCCChH-----------------HHHHHhcCCCC--CCCCcEEEEEeCCchhh-hhc----CcccEEE
Q 004686 93 RLCRKRVLVILDDVDQLE-----------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-KSH----GVTNTYK 148 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~-----------------~~~~l~~~l~~--~~~~~~iliTtR~~~~~-~~~----~~~~~~~ 148 (737)
.....+.+|++|+++... .+..++..+.. ...+..+|.||...... ... +....+.
T Consensus 94 a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~ 173 (262)
T 2qz4_A 94 ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 173 (262)
T ss_dssp HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEE
T ss_pred HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEE
Confidence 223457899999997651 12333322111 12345666666553221 111 3345788
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch-HHHHHHH
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLGS 198 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~a~ 198 (737)
++..+.++..+++...+...... .........+++.+.|.+- .+..+..
T Consensus 174 i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 174 IDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999998776322211 1122234678888888754 4544433
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.26 E-value=2.6e-06 Score=85.93 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=72.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccC----ceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (737)
....++|+|++|+|||++|+.+++.+..... ..+.+. ..... ..+ ..........
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~----~~~l~----------~~~-------~g~~~~~~~~ 124 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT----RDDLV----------GQY-------IGHTAPKTKE 124 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC----GGGTC----------CSS-------TTCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc----HHHhh----------hhc-------ccccHHHHHH
Confidence 3457999999999999999999987643221 233332 11000 000 0000011111
Q ss_pred HHHHhcCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhh------h--cCcccEEEcC
Q 004686 90 IRWRLCRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK------S--HGVTNTYKVR 150 (737)
Q Consensus 90 l~~~l~~~~~LlilDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~--~~~~~~~~l~ 150 (737)
+.+.. +.-+|++|+++.. .....+...+.....+..+|.||....... . .+....+.++
T Consensus 125 ~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 125 VLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp HHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred HHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC
Confidence 22222 2349999999733 334444444333345667777776432111 0 1233578999
Q ss_pred CCChhhHHHHHhhhc
Q 004686 151 GLDYVEALQLFHLKV 165 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~ 165 (737)
+++.++..+++...+
T Consensus 203 ~~~~~~~~~il~~~l 217 (309)
T 3syl_A 203 DYSDEELFEIAGHML 217 (309)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998876
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.25 E-value=6.9e-06 Score=84.07 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH-
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 93 (737)
.+-|+|+|++|+|||++|+.++...... .+.+. +. ++...+. ...+.....+.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~----~~------~l~~~~~-----------g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANST---FFSVS----SS------DLVSKWM-----------GESEKLVKQLFAMA 139 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE----HH------HHHSCC--------------CHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee----HH------HHhhhhc-----------chHHHHHHHHHHHH
Confidence 3568999999999999999999977432 22222 11 1100000 0111112222222
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCC---CCCCCCcEEEEEeCCch-hhh--hcCcccEEEcCCCCh
Q 004686 94 LCRKRVLVILDDVDQLE-------------QLQALVGNH---DWFGFGSRIIITSRDEH-VLK--SHGVTNTYKVRGLDY 154 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------------~~~~l~~~l---~~~~~~~~iliTtR~~~-~~~--~~~~~~~~~l~~l~~ 154 (737)
...++.+|+||+++... ....++..+ .....+..||.||.... +.. ..+....+.++..+.
T Consensus 140 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCH
Confidence 23577899999996542 122222221 11133455665665432 111 114556788999999
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC-CchHHHHHHH
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVLGS 198 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~a~ 198 (737)
++..+++......... .......+.|++.+.| .+..|..++.
T Consensus 220 ~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 220 AARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999887743221 1123456778888888 4445555443
No 191
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=8.6e-05 Score=77.14 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=56.7
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCccccccCCCCCCeEeCCCCCCcccch-hhhcCCCCCEEccccCccCCCCCCCCCccc
Q 004686 582 PRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELPPEIV 660 (737)
Q Consensus 582 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~l~~~L~ 660 (737)
..+.++.+|+.+.+..+- .......+.+|++|+.+.+.++.++.++. .|.+|.+|+.+.|..+ ++.+..
T Consensus 257 ~aF~~~~~l~~i~l~~~i--~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~------ 326 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAKV--KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV------ 326 (379)
T ss_dssp TTTTTCTTCCEEEECCCC--SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT------
T ss_pred cccceeehhccccccccc--eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH------
Confidence 346778888888886542 22233456788899999998888886654 6788889998888543 222211
Q ss_pred eeecccccccccccccc
Q 004686 661 FVGAEDCTSLETISAFA 677 (737)
Q Consensus 661 ~l~l~~c~~L~~l~~~~ 677 (737)
-.+.+|.+|+.+.+..
T Consensus 327 -~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 327 -YAFKNCKALSTISYPK 342 (379)
T ss_dssp -TTTTTCTTCCCCCCCT
T ss_pred -HHhhCCCCCCEEEECC
Confidence 1356788888776643
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=82.40 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH-H
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~ 93 (737)
.+.|+|+|++|+|||++|+.++...... .+.+....-.... .. ........+.+ .
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l~~~~--~g-------------------~~~~~~~~~~~~a 172 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGAT---FFSISASSLTSKW--VG-------------------EGEKMVRALFAVA 172 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEEGGGGCCSS--TT-------------------HHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEehHHhhccc--cc-------------------hHHHHHHHHHHHH
Confidence 4679999999999999999999875322 2333311111000 00 00111111222 1
Q ss_pred hcCCeEEEEEcCCCCh-------------HHHHHHhcCCC----CCCCCcEEEEEeCCch-hhhh--cCcccEEEcCCCC
Q 004686 94 LCRKRVLVILDDVDQL-------------EQLQALVGNHD----WFGFGSRIIITSRDEH-VLKS--HGVTNTYKVRGLD 153 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-------------~~~~~l~~~l~----~~~~~~~iliTtR~~~-~~~~--~~~~~~~~l~~l~ 153 (737)
...++.+|+||+++.. .....++..+. ....+..||.||.... +... .+....+.+...+
T Consensus 173 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~ 252 (357)
T 3d8b_A 173 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPE 252 (357)
T ss_dssp HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCC
T ss_pred HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcC
Confidence 2356789999998533 11223322221 1123445555665432 1111 1344577889999
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC-CchHHHHHHH
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVLGS 198 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~a~ 198 (737)
.++..+++...+..... ....+..+.|++.+.| .+..+..++.
T Consensus 253 ~~~r~~il~~~~~~~~~--~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQC--CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHHHTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC--CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999877633211 1223567788888888 4455555544
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.14 E-value=3.1e-05 Score=81.75 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=87.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+-|+|+|++|+|||++|+.++...... ..+.+. +. . +....... .+..+..+.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~----~~--~----l~~~~~g~-----------~~~~~~~~f~~a 223 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS----SS--D----LVSKWLGE-----------SEKLVKNLFQLA 223 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEEC----CC--------------------------CCCTHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEe----HH--H----HHhhhcch-----------HHHHHHHHHHHH
Confidence 4689999999999999999999976211 112222 11 0 11111100 011122222222
Q ss_pred -cCCeEEEEEcCCCCh-------------HHHHHHhcCCCCC---CCCcEEEEEeCCchhh-h--hcCcccEEEcCCCCh
Q 004686 95 -CRKRVLVILDDVDQL-------------EQLQALVGNHDWF---GFGSRIIITSRDEHVL-K--SHGVTNTYKVRGLDY 154 (737)
Q Consensus 95 -~~~~~LlilDd~~~~-------------~~~~~l~~~l~~~---~~~~~iliTtR~~~~~-~--~~~~~~~~~l~~l~~ 154 (737)
..++.+|++|+++.. .....++..+... ..+..||.||...... . ..+....+.++..+.
T Consensus 224 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 303 (444)
T 2zan_A 224 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 303 (444)
T ss_dssp HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH
Confidence 356789999999765 1244555544321 3445666666543211 1 114445788888889
Q ss_pred hhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC-chHHHHHHH
Q 004686 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (737)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~a~ 198 (737)
++..+++........ ..........|++.+.|. +..|..++.
T Consensus 304 ~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 304 HARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999988763321 111234567788888884 445554433
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.11 E-value=3.3e-05 Score=80.35 Aligned_cols=157 Identities=12% Similarity=0.024 Sum_probs=83.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH-
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 93 (737)
.+-|+|+|++|+|||++|+.++.+.... .+.+. +... ..... . .....+..+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~---~~~v~----~~~l--~~~~~----g-----------~~~~~~~~~~~~a 203 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT---FFNIS----AASL--TSKYV----G-----------EGEKLVRALFAVA 203 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEC----SCCC------------------------CHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc---EEEee----HHHh--hcccc----c-----------hHHHHHHHHHHHH
Confidence 3689999999999999999998875322 22332 1110 00000 0 001111222222
Q ss_pred hcCCeEEEEEcCCCCh-----------H--HHHHHhcCC---CC-CCCCcEEEEEeCCch-hhh--hcCcccEEEcCCCC
Q 004686 94 LCRKRVLVILDDVDQL-----------E--QLQALVGNH---DW-FGFGSRIIITSRDEH-VLK--SHGVTNTYKVRGLD 153 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-----------~--~~~~l~~~l---~~-~~~~~~iliTtR~~~-~~~--~~~~~~~~~l~~l~ 153 (737)
...++.+|+||+++.. . ....++..+ .. ......||.||.... +.. ..+....+.+...+
T Consensus 204 ~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp HHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCC
T ss_pred HhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcC
Confidence 2245679999999654 1 112222111 11 123345555565422 111 11344568899999
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch-HHHHHH
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLG 197 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~a 197 (737)
.++..+++...+..... ....+....+++.+.|..- .+..+.
T Consensus 284 ~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999887633221 2233466788888888654 454443
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=1.4e-05 Score=81.04 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=90.8
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
+.+.+++..+. ...++.+.|++|+|||++|+.+++.+.. .++++. .+. .. .+.+++.+.......
T Consensus 36 ~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~----~~~-~~-~~~i~~~~~~~~~~~----- 100 (324)
T 3u61_B 36 ETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN----GSD-CK-IDFVRGPLTNFASAA----- 100 (324)
T ss_dssp HHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE----TTT-CC-HHHHHTHHHHHHHBC-----
T ss_pred HHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc----ccc-cC-HHHHHHHHHHHHhhc-----
Confidence 34556666432 2357889999999999999999987632 233333 211 11 222222222211110
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChH---HHHHHhcCCCCCCCCcEEEEEeCCch-hhhhc-CcccEEEcCCCChhh
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQLE---QLQALVGNHDWFGFGSRIIITSRDEH-VLKSH-GVTNTYKVRGLDYVE 156 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~~---~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~l~~~~ 156 (737)
...+++-++++|+++... ..+.+...+.....+..+|+||.... +.... +....+++++.+.++
T Consensus 101 -----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e 169 (324)
T 3u61_B 101 -----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDED 169 (324)
T ss_dssp -----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHH
T ss_pred -----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHH
Confidence 012478899999998765 23444333322234567777777642 11111 112378999999888
Q ss_pred HHHHHhhh-------ccCCCCCChHHH-HHHHHHHHHhCCCchHHHHH
Q 004686 157 ALQLFHLK-------VSNGKQPTDYRV-ELSKYVVNYAGGLPLAIEVL 196 (737)
Q Consensus 157 ~~~l~~~~-------~~~~~~~~~~~~-~~~~~i~~~~~G~Pl~i~~~ 196 (737)
..+++... +..... ...+ +..+.+++.++|.+..+...
T Consensus 170 ~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 170 KIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHHH
Confidence 54443322 111111 1112 56677888888887654433
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=8.4e-05 Score=74.16 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=82.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH-H
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-W 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~ 92 (737)
..+.|+|+|++|+|||++|+.++...... .+.+. + .++. ....... ...+..+. .
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~----~------~~l~----~~~~g~~-------~~~~~~~f~~ 103 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK----G------PELL----TMWFGES-------EANVREIFDK 103 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC----H------HHHH----HHHHTTC-------TTHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE----h------HHHH----hhhcCch-------HHHHHHHHHH
Confidence 34679999999999999999999976422 22322 1 1122 1211111 11122222 2
Q ss_pred HhcCCeEEEEEcCCCChHH----------------HHHHhcCCC--CCCCCcEEEEEeCCch-hhhh----cCcccEEEc
Q 004686 93 RLCRKRVLVILDDVDQLEQ----------------LQALVGNHD--WFGFGSRIIITSRDEH-VLKS----HGVTNTYKV 149 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~~~----------------~~~l~~~l~--~~~~~~~iliTtR~~~-~~~~----~~~~~~~~l 149 (737)
.....+.++++|+++.... ...++..+. ....+..||.||.... +... .+....+.+
T Consensus 104 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i 183 (301)
T 3cf0_A 104 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183 (301)
T ss_dssp HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEec
Confidence 2335679999999974311 222222221 1123456666666442 2111 134457899
Q ss_pred CCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchH
Q 004686 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (737)
Q Consensus 150 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 192 (737)
+..+.++..+++............ ...+.+++.+.|+|-+
T Consensus 184 ~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 184 PLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp CCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred CCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 999999999999877633211111 1134566677777643
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=2.9e-05 Score=79.18 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=91.5
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCc-eEEEeecchhhcccChHHHHHHHHHHHhhcccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 80 (737)
.|..++..+. .+-++++|++|+||||+|+.++..+... +.. +..+. .+....... .++..........
T Consensus 36 ~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~-ir~~i~~~~~~~~--- 105 (340)
T 1sxj_C 36 TVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDV-VRNQIKDFASTRQ--- 105 (340)
T ss_dssp HHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHH-HHTHHHHHHHBCC---
T ss_pred HHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHH-HHHHHHHHHhhcc---
Confidence 3444555432 2238999999999999999999976432 221 12222 111122222 1222222111000
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCch-hhhh-cCcccEEEcCCCChhh
Q 004686 81 WDVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVE 156 (737)
Q Consensus 81 ~~~~~~~~~l~~~l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~l~~~~ 156 (737)
...+.+-++|+|+++.. ...+++...+........++++|.... +... .+....+++.++++++
T Consensus 106 ------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~ 173 (340)
T 1sxj_C 106 ------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEA 173 (340)
T ss_dssp ------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred ------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHH
Confidence 01234789999998654 233333333222235566777765432 1111 1222378999999999
Q ss_pred HHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 004686 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (737)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 194 (737)
..+.+.+.+..... ...++..+.+++.++|.+.-+.
T Consensus 174 ~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 174 IERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 99988876532211 1233567788899999886543
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.9e-05 Score=78.51 Aligned_cols=139 Identities=14% Similarity=0.018 Sum_probs=84.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh---cccCceEEEeecchhhc-ccChHHHHHHHHHHHhhccc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK---DQFEASSFLANVREVSV-TRGLVPLQEQLLSEVLMERD 77 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~---~~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~ 77 (737)
+.|...+..+. .+...++|++|+|||++|+.++.... .......++. ... ...+.+ ++++........
T Consensus 7 ~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~-ir~li~~~~~~p- 78 (305)
T 2gno_A 7 ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDD-IRTIKDFLNYSP- 78 (305)
T ss_dssp HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHH-HHHHHHHHTSCC-
T ss_pred HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHH-HHHHHHHHhhcc-
Confidence 34555566544 67999999999999999999998531 1122334433 111 122222 233443321110
Q ss_pred ccccchhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-hhhhhcCcccEEEcCCCCh
Q 004686 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKSHGVTNTYKVRGLDY 154 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~~~~~~~~l~~l~~ 154 (737)
..+++-++|+|+++.. ...++++..+-..++...+|++|..+ .+....... .++++++++
T Consensus 79 ----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 79 ----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp ----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred ----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 1246789999999765 33555554443335677777776543 333333334 899999999
Q ss_pred hhHHHHHhhhc
Q 004686 155 VEALQLFHLKV 165 (737)
Q Consensus 155 ~~~~~l~~~~~ 165 (737)
++..+.+.+..
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 199
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=0.00011 Score=73.27 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=82.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH-H
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~ 93 (737)
.+.+.|+|++|+|||++|+.++...... .+.+........... ........+.. .
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~~~~~---------------------~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSAT---FLNISAASLTSKYVG---------------------DGEKLVRALFAVA 109 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEESTTTSSSSCS---------------------CHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEeeHHHHhhcccc---------------------hHHHHHHHHHHHH
Confidence 4689999999999999999999876432 222321110000000 01111111111 2
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHh---cCCCCC--CCCcEEEEEeCCch-hhhh--cCcccEEEcCCC
Q 004686 94 LCRKRVLVILDDVDQLE-------------QLQALV---GNHDWF--GFGSRIIITSRDEH-VLKS--HGVTNTYKVRGL 152 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~-------------~~~~l~---~~l~~~--~~~~~iliTtR~~~-~~~~--~~~~~~~~l~~l 152 (737)
...++.+|++|+++... ....++ ...... +.+..||.||.... +... .+....+.++..
T Consensus 110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence 23567899999985431 111122 111111 13445666666532 1111 133346778888
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCch-HHHHHHH
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLGS 198 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~a~ 198 (737)
+.++..+++......... ....+..+.+++.+.|.+. .+..++.
T Consensus 190 ~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 888888888776532211 1223456788888988875 5544433
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=2.7e-06 Score=78.18 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCccEEEccCCCCCcc----cCcccCCCCcccEEEc--cCccCc-----ccCcccccCCCCcEEEccCCC
Q 004686 493 MKSLKILCLCGCLKLEK----LPQDLGEVECLEELDV--GGTAIR-----QIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 493 l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~~~~~-----~l~~~~~~l~~L~~L~l~~~~ 552 (737)
.++|++|+|++|.+... +...+...++|++|++ ++|.++ .+...+...++|+.|++++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34455555555444321 2333444455555555 445554 133344445556666665554
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00013 Score=74.07 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+=|.++||+|+|||.+|++++......| +.+....-.+.+-. +.+..+..+.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~sk~vG---------------------ese~~vr~lF~ 235 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGAELVQKYIG---------------------EGSRMVRELFV 235 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGGGGSCSSTT---------------------HHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhHHhhccccc---------------------hHHHHHHHHHH
Confidence 3456799999999999999999999875443 22321111111110 11111222222
Q ss_pred Hh-cCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCcEEEEEeCCch-----hhhhcCcccEEE
Q 004686 93 RL-CRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEH-----VLKSHGVTNTYK 148 (737)
Q Consensus 93 ~l-~~~~~LlilDd~~~~~----------------~~~~l~~~l~--~~~~~~~iliTtR~~~-----~~~~~~~~~~~~ 148 (737)
.. +..+++|.+|+++..- .+..++..+. ....+..||.||.... +....+.+..++
T Consensus 236 ~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~ 315 (405)
T 4b4t_J 236 MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315 (405)
T ss_dssp HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEE
T ss_pred HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEE
Confidence 22 3568999999985431 1223332221 1234445666665432 222235567899
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
++.-+.++..++|+....+...... ...+.|++.+.|.-
T Consensus 316 i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 316 FPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred cCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 9988999999999766533211111 12456777787754
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=5.1e-06 Score=74.15 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=37.2
Q ss_pred CCCCCCCcEEeccCCCCCCCCccccccCC----CCCCeEeCCCC-CCcc-cchhhhcCCCCCEEccccCccCC
Q 004686 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSL----FSLEAIDLSGN-NFFS-LPSSINQLLKLKILCLEKCRNLK 650 (737)
Q Consensus 584 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~n-~l~~-lp~~l~~l~~L~~L~l~~n~~~~ 650 (737)
+.++++|++|+|++|..+++.....+..+ ++|++|+|++| +++. --..+..+++|++|++++|+.++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 44566666666666654554444444442 35666777666 3551 11234566666666666666544
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=2e-05 Score=72.35 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=37.5
Q ss_pred CCCCcEEeccCCCCCCC---CccccccCCCCCCeEeC--CCCCCcc-----cchhhhcCCCCCEEccccCc
Q 004686 587 LSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDL--SGNNFFS-----LPSSINQLLKLKILCLEKCR 647 (737)
Q Consensus 587 ~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l--~~n~l~~-----lp~~l~~l~~L~~L~l~~n~ 647 (737)
.++|++|+|++|.+.+. .+...+...++|++|+| ++|.++. +...+...++|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34566666666663221 13444556667777777 6677662 34456666778888877776
No 204
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.78 E-value=0.00015 Score=77.13 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=81.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-|+|+|++|+|||++|+.++.+... ..+.+.+..-.+.. ..+ ........+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~vn~~~l~~~~--~g~------------------~~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIMSKL--AGE------------------SESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSS---EEEEEEHHHHHTSC--TTH------------------HHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCC---CEEEEEchHhhhhh--cch------------------hHHHHHHHHHHH
Confidence 3457999999999999999999887532 12333311000000 000 001111222233
Q ss_pred hcCCeEEEEEcCCCCh-------------HHHHHHhcCCC--CCCCCcEEEEEeCCch-hhh----hcCcccEEEcCCCC
Q 004686 94 LCRKRVLVILDDVDQL-------------EQLQALVGNHD--WFGFGSRIIITSRDEH-VLK----SHGVTNTYKVRGLD 153 (737)
Q Consensus 94 l~~~~~LlilDd~~~~-------------~~~~~l~~~l~--~~~~~~~iliTtR~~~-~~~----~~~~~~~~~l~~l~ 153 (737)
..+++.+|+||+++.. .....++..+. .......||.||.... +.. ..+....+.++..+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCC
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCC
Confidence 3466789999998321 11222222221 1123445555665432 211 12344478999999
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC-chHHHHH
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVL 196 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~ 196 (737)
.++..+++............ ....++++.+.|. +..+..+
T Consensus 374 ~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 374 ATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 99999999887633221111 1235566667664 4334433
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00031 Score=72.71 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+=|.++||+|+|||.+|++++......| +.+....-.+.+.. +....+..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~l~sk~~G---------------------ese~~ir~~F~ 268 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASGIVDKYIG---------------------ESARIIREMFA 268 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGTCCSSSS---------------------HHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhhhccccch---------------------HHHHHHHHHHH
Confidence 3457899999999999999999999875432 22221111111111 01111122222
Q ss_pred H-hcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCcEEEEEeCCchhhh-----hcCcccEEE
Q 004686 93 R-LCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVLK-----SHGVTNTYK 148 (737)
Q Consensus 93 ~-l~~~~~LlilDd~~~~~----------------~~~~l~~~l~--~~~~~~~iliTtR~~~~~~-----~~~~~~~~~ 148 (737)
. -...+++|.+|+++..- .+..++..+. ....+..||.||-.....+ ..+.+..++
T Consensus 269 ~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~ 348 (437)
T 4b4t_L 269 YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348 (437)
T ss_dssp HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEEC
T ss_pred HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeee
Confidence 2 23578999999985320 1233333221 1234456666665432211 223455788
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
++.-+.++..++|+........... ...+.+++.+.|.-
T Consensus 349 i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 349 IPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFN 387 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCC
T ss_pred cCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCC
Confidence 8888888888888766532211111 11456777777754
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=7.4e-06 Score=73.07 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=14.6
Q ss_pred CCeeEEccCCccccc-cccccCCCCCcEEecCCC
Q 004686 401 KLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHS 433 (737)
Q Consensus 401 ~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~ 433 (737)
+|+.||+++|.|+.. ...+..|++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 555555555554421 122334444444444444
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=5.2e-05 Score=69.28 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+.++|+|++|+||||+++.++....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999764
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.0003 Score=68.41 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=78.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH-Hh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-RL 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l 94 (737)
+-++|+|++|+|||++|+.++...... .+.+....-..... .........+.+ ..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~~~~~~---------------------~~~~~~~~~~~~~a~ 101 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFVEMFV---------------------GVGASRVRDMFEQAK 101 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSSTTSCC---------------------CCCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHHHHHhh---------------------hhhHHHHHHHHHHHH
Confidence 458999999999999999999876432 23333110000000 000111122222 22
Q ss_pred cCCeEEEEEcCCCCh----------------HHHHHHhcCCC--CCCCCcEEEEEeCCch-hhhh----cCcccEEEcCC
Q 004686 95 CRKRVLVILDDVDQL----------------EQLQALVGNHD--WFGFGSRIIITSRDEH-VLKS----HGVTNTYKVRG 151 (737)
Q Consensus 95 ~~~~~LlilDd~~~~----------------~~~~~l~~~l~--~~~~~~~iliTtR~~~-~~~~----~~~~~~~~l~~ 151 (737)
...+.++++|+++.. .....++..+. ....+..||.||.... +... .+....+.++.
T Consensus 102 ~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~ 181 (257)
T 1lv7_A 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181 (257)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCC
T ss_pred HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCC
Confidence 345689999998321 11222322111 1133455666666532 2111 13345778888
Q ss_pred CChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCC-CchHHHHH
Q 004686 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVL 196 (737)
Q Consensus 152 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~ 196 (737)
.+.++..+++............ .....++..+.| .+.-+..+
T Consensus 182 P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 182 PDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 8888888888776532111111 113446666777 55555433
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00059 Score=70.36 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
...+=|.++||+|+|||.+|++++......| +.+....-.+.+.. +.+..+..+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs~s~L~sk~vG---------------------esek~ir~lF~ 296 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVIGSELVQKYVG---------------------EGARMVRELFE 296 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGCCCSSS---------------------HHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEEhHHhhcccCC---------------------HHHHHHHHHHH
Confidence 4457899999999999999999999875432 22221111111111 11111122222
Q ss_pred H-hcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCcEEEEEeCCch-----hhhhcCcccEEE
Q 004686 93 R-LCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEH-----VLKSHGVTNTYK 148 (737)
Q Consensus 93 ~-l~~~~~LlilDd~~~~~----------------~~~~l~~~l~--~~~~~~~iliTtR~~~-----~~~~~~~~~~~~ 148 (737)
. -...+++|++|+++..- .+..++..+. ....+..||.||-... +....+.+..++
T Consensus 297 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~ 376 (467)
T 4b4t_H 297 MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVE 376 (467)
T ss_dssp HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEEC
T ss_pred HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEE
Confidence 2 23568999999985331 1222222221 1123444555554322 111224566888
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
++.-+.++..++|+........... -..+.|++.+.|.-
T Consensus 377 i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 377 FSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNST 415 (467)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSCC
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCCC
Confidence 9888999999999766532211111 11456777777753
No 210
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=6.6e-05 Score=68.99 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.+.+.|+|++|+|||++|+.++.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 457799999999999999999997643
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00025 Score=73.35 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=79.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 91 (737)
-+..+=|.++||+|+|||.+|++++......| +.+....-.+.+.+- .+..+..+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~~~~vGe---------------------se~~ir~lF 267 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLAAPQLVQMYIGE---------------------GAKLVRDAF 267 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGCSSCSSH---------------------HHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEehhhhhhcccch---------------------HHHHHHHHH
Confidence 34467899999999999999999999875432 222211111111110 111111222
Q ss_pred HHh-cCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCcEEEEEeCCchhh-h----hcCcccEE
Q 004686 92 WRL-CRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-K----SHGVTNTY 147 (737)
Q Consensus 92 ~~l-~~~~~LlilDd~~~~~----------------~~~~l~~~l~~--~~~~~~iliTtR~~~~~-~----~~~~~~~~ 147 (737)
+.. ...+++|.+|+++..- .+..++..+.. ...+..||.||...... . ..+.+..+
T Consensus 268 ~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I 347 (434)
T 4b4t_M 268 ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKI 347 (434)
T ss_dssp HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEE
T ss_pred HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEE
Confidence 211 2457899999984220 12233333221 12344555566543221 1 22455678
Q ss_pred EcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 148 KVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 148 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
+++.-+.++..++|+........... -..+.|++.+.|.
T Consensus 348 ~i~lPd~~~R~~Il~~~~~~~~~~~d---vdl~~lA~~t~G~ 386 (434)
T 4b4t_M 348 EFPLPSEDSRAQILQIHSRKMTTDDD---INWQELARSTDEF 386 (434)
T ss_dssp ECCCCCHHHHHHHHHHHHHHSCBCSC---CCHHHHHHHCSSC
T ss_pred EeCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCC
Confidence 89888888888888765422111111 1145677777775
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00029 Score=71.81 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+=|.++||+|+|||.+|+++|......| +.+....-.+.+.. +.+..+..+.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f---i~v~~s~l~sk~vG---------------------esek~ir~lF~ 269 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATF---LRIVGSELIQKYLG---------------------DGPRLCRQIFK 269 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEE---EEEESGGGCCSSSS---------------------HHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCE---EEEEHHHhhhccCc---------------------hHHHHHHHHHH
Confidence 3457899999999999999999999875432 22221111111111 11111222222
Q ss_pred Hh-cCCeEEEEEcCCCCh-------------H---HHHHHhcCCC--CCCCCcEEEEEeCCchhhh-----hcCcccEEE
Q 004686 93 RL-CRKRVLVILDDVDQL-------------E---QLQALVGNHD--WFGFGSRIIITSRDEHVLK-----SHGVTNTYK 148 (737)
Q Consensus 93 ~l-~~~~~LlilDd~~~~-------------~---~~~~l~~~l~--~~~~~~~iliTtR~~~~~~-----~~~~~~~~~ 148 (737)
.. +..+++|.+|+++.. . .+..++..+. ....+..||.||-.....+ .-+.+..++
T Consensus 270 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~ 349 (437)
T 4b4t_I 270 VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKIL 349 (437)
T ss_dssp HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEEC
T ss_pred HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEE
Confidence 22 256799999987432 0 1222322211 1123445566665432221 124455788
Q ss_pred cCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
++.-+.++..++|+........... ...+.|++.+.|.-
T Consensus 350 v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLS 388 (437)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSCC
T ss_pred cCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 8888888888888766533211111 11456777777753
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.66 E-value=5.8e-05 Score=70.48 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+.+.|+|++|+|||++|+.++.........++|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68999999999999999999997765545566665
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.65 E-value=0.00045 Score=72.66 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
+-|+|+|++|+|||++|+.++.+....| +.+....-....... ........+.+...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f---~~is~~~~~~~~~g~--------------------~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPF---FHISGSDFVELFVGV--------------------GAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGTTTCCTTH--------------------HHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHHHHHHHhcc--------------------cHHHHHHHHHHHHh
Confidence 3488999999999999999999764322 233211101000000 00111122233334
Q ss_pred CCeEEEEEcCCCCh----------------HHHHHHhcCCC--CCCCCcEEEEEeCCchhhh-h----cCcccEEEcCCC
Q 004686 96 RKRVLVILDDVDQL----------------EQLQALVGNHD--WFGFGSRIIITSRDEHVLK-S----HGVTNTYKVRGL 152 (737)
Q Consensus 96 ~~~~LlilDd~~~~----------------~~~~~l~~~l~--~~~~~~~iliTtR~~~~~~-~----~~~~~~~~l~~l 152 (737)
..+.+|++|+++.. ..+..++..+. ....+..||.||....... . .+.+..+.++..
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 67899999998542 11233332211 1123556666666543222 1 134447888888
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.++..+++............ .....+++.+.|+.
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~s 221 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFV 221 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCc
Confidence 888888888766532211111 11445777888876
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.65 E-value=1.5e-05 Score=69.86 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.-|.|+|++|+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999854
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.65 E-value=0.00021 Score=71.87 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+.++|++|+|||++|+.++....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999763
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00026 Score=73.17 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
-+..+=|.++||+|+|||++|+++|......
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445779999999999999999999987543
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.62 E-value=0.00047 Score=73.13 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=55.8
Q ss_pred EEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEe---------CC----c-hhhh-hcCcccEEEcCCCChhhHHHHH
Q 004686 99 VLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITS---------RD----E-HVLK-SHGVTNTYKVRGLDYVEALQLF 161 (737)
Q Consensus 99 ~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTt---------R~----~-~~~~-~~~~~~~~~l~~l~~~~~~~l~ 161 (737)
-++++|+++.. +..++++..+...... .+|+.| .. + .+.. .......+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999765 4466666665543444 444344 11 1 1111 1112224799999999999999
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHh-CCCchHHHHH
Q 004686 162 HLKVSNGKQPTDYRVELSKYVVNYA-GGLPLAIEVL 196 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~Pl~i~~~ 196 (737)
..++.... ....++....|++.+ .|.|.....+
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87752111 112335567788877 7888654443
No 219
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.61 E-value=0.00014 Score=72.14 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++.++++|++|+|||++|+.++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999873
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=1e-05 Score=78.22 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=52.2
Q ss_pred cCccccceeccccccccc--cCccccCCCCCccEEEccCCCCCcccCcccCCCC--cccEEEccCccCc-ccCc------
Q 004686 467 GTLKRLILLNLKDCRNLV--SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE--CLEELDVGGTAIR-QIPP------ 535 (737)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~-~l~~------ 535 (737)
.++++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777776654 4455556777788888877776653 2233333 7888888888876 3442
Q ss_pred -ccccCCCCcEEEc
Q 004686 536 -SIVQLVNLKIFSL 548 (737)
Q Consensus 536 -~~~~l~~L~~L~l 548 (737)
.+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3556788888753
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=0.00036 Score=70.10 Aligned_cols=35 Identities=40% Similarity=0.330 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++++|++|+|||++|+.++......-...+++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 58999999999999999999997654333345554
No 222
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.55 E-value=0.0002 Score=71.27 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..|.|+|++|+|||++|+.++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 468899999999999999999854
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=6.8e-05 Score=72.37 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=60.3
Q ss_pred CCCCCCcEEeccCCCCCCC--CccccccCCCCCCeEeCCCCCCcccchhhhcCC--CCCEEccccCccCCCCCCCCCccc
Q 004686 585 TGLSSLQTLDLSDCNLLEG--AIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL--KLKILCLEKCRNLKSLPELPPEIV 660 (737)
Q Consensus 585 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~n~~~~~~~~l~~~L~ 660 (737)
.++++|++|+|++|. +++ .++..+..+++|+.|+|++|.++.+. .+..+. +|++|+|++|+....+|..+ ..+
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~-~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS-TYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH-HHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcch-hHH
Confidence 357899999999999 444 34566678999999999999998763 344444 99999999999776554211 111
Q ss_pred eeeccccccccccc
Q 004686 661 FVGAEDCTSLETIS 674 (737)
Q Consensus 661 ~l~l~~c~~L~~l~ 674 (737)
.-.+..+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 11234566666654
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=0.00038 Score=65.83 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=33.2
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.+++.++-+.-.++.|.|++|+||||+++.++. . .-..++|+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 345556654444456999999999999999999998 2 224566765
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.46 E-value=0.00018 Score=70.46 Aligned_cols=35 Identities=23% Similarity=0.089 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.|+|++|+|||++|+.++......-...+.+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 46889999999999999999986533222344554
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=0.0005 Score=69.62 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=37.0
Q ss_pred cEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHHHH
Q 004686 145 NTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (737)
Q Consensus 145 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~a 197 (737)
....+++.+.++..+++.+.+... ......+.+..|+++++|.|..+..+.
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~--~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLM--DVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 357899999999999998875321 122344668889999999997655443
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.43 E-value=0.00011 Score=64.33 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
-..++|+|+.|+|||+|++.++......-..++|+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 358999999999999999999997654322256655
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.0007 Score=66.20 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=67.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh-cC
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL-CR 96 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 96 (737)
++|+|++|+||||+|+.++....- ..+++... ... .....+..+ .+..+.+.. ..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~-~l~-~~~~~~~~~-------------------~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKGP-ELL-NMYVGESER-------------------AVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT-TTC-SSTTHHHHH-------------------HHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH-HHH-hhhhhHHHH-------------------HHHHHHHHHHhc
Confidence 999999999999999999986543 23344311 110 001111111 112222222 34
Q ss_pred CeEEEEEcCCCChH-------------HHHHHhcCCC--CCCCCcEEEEEeCCchhhhh-----cCcccEEEcCCCChhh
Q 004686 97 KRVLVILDDVDQLE-------------QLQALVGNHD--WFGFGSRIIITSRDEHVLKS-----HGVTNTYKVRGLDYVE 156 (737)
Q Consensus 97 ~~~LlilDd~~~~~-------------~~~~l~~~l~--~~~~~~~iliTtR~~~~~~~-----~~~~~~~~l~~l~~~~ 156 (737)
.+.++++|+++... ....+...+. .......++.+|..+.+.+. .+.+..+.++.-+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 56889999986421 1122222111 11223345555555433221 2456678899889999
Q ss_pred HHHHHhhhc
Q 004686 157 ALQLFHLKV 165 (737)
Q Consensus 157 ~~~l~~~~~ 165 (737)
..++++...
T Consensus 183 r~~il~~~~ 191 (274)
T 2x8a_A 183 RLAILKTIT 191 (274)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998765
No 229
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.36 E-value=0.00075 Score=71.70 Aligned_cols=134 Identities=11% Similarity=0.049 Sum_probs=67.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
++.+.+.... ..-++|+|++|+|||++|+.++..+...+ +..++..+ +. ... .
T Consensus 191 ~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~---~~------------~~~-~--- 249 (468)
T 3pxg_A 191 RVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD---MG------------TKY-R--- 249 (468)
T ss_dssp HHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------------------
T ss_pred HHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee---CC------------ccc-c---
Confidence 4445554422 23568999999999999999999874432 11122111 11 000 0
Q ss_pred cccccchhhhHHHHHH-HhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhh------hc-CcccEEE
Q 004686 77 DLIIWDVHKGINLIRW-RLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLK------SH-GVTNTYK 148 (737)
Q Consensus 77 ~~~~~~~~~~~~~l~~-~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~~-~~~~~~~ 148 (737)
...+.....+.+ .-+.++.++++|. ..+....+.+.+. ....++|.+|....... .. +...++.
T Consensus 250 ----g~~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~ 321 (468)
T 3pxg_A 250 ----GEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQ 321 (468)
T ss_dssp -------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEE
T ss_pred ----chHHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccce
Confidence 011111222222 2235678999992 2222333443332 22345665555443111 11 1123689
Q ss_pred cCCCChhhHHHHHhhhc
Q 004686 149 VRGLDYVEALQLFHLKV 165 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~ 165 (737)
+++.+.++..+++....
T Consensus 322 v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 322 VDQPSVDESIQILQGLR 338 (468)
T ss_dssp CCCCCHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 230
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.33 E-value=0.00035 Score=63.19 Aligned_cols=116 Identities=17% Similarity=0.035 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcc---cChHHHHHHHHHHH---h--hcccc-----cccc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT---RGLVPLQEQLLSEV---L--MERDL-----IIWD 82 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l---~--~~~~~-----~~~~ 82 (737)
..|.|++..|.||||.|-..+.+...+--.+.++. +-.. .+-..+++.+.-.+ + ..... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ----F~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ----FIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE----SSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE----eeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 46666777779999999999986655444455543 2111 11122222220000 0 00000 0011
Q ss_pred hhhhHHHHHHHhcCCe-EEEEEcCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 83 VHKGINLIRWRLCRKR-VLVILDDVDQL-----EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 83 ~~~~~~~l~~~l~~~~-~LlilDd~~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.......+.+.+.+.+ =|||||++... ...+.+...+........+|+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2333445566665544 49999997221 11222222222335678899999985
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.32 E-value=0.0025 Score=62.67 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=75.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc-C
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC-R 96 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~ 96 (737)
++|+|++|+||||+++.++..... ..+.+.. . ++ ... . .......+..+.+... .
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~----~------~~----~~~-~------~~~~~~~i~~~~~~~~~~ 131 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV---PFITASG----S------DF----VEM-F------VGVGAARVRDLFETAKRH 131 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH----H------HH----HHS-T------TTHHHHHHHHHHHHHHTS
T ss_pred EEEECCCcChHHHHHHHHHHHcCC---CEEEecH----H------HH----HHH-H------hhHHHHHHHHHHHHHHhc
Confidence 899999999999999999987642 2334331 1 00 000 0 0000111222233322 4
Q ss_pred CeEEEEEcCCCCh------------H----HHHHHhcCCCCC-C-CCcEEEEEeCCchhhh-----hcCcccEEEcCCCC
Q 004686 97 KRVLVILDDVDQL------------E----QLQALVGNHDWF-G-FGSRIIITSRDEHVLK-----SHGVTNTYKVRGLD 153 (737)
Q Consensus 97 ~~~LlilDd~~~~------------~----~~~~l~~~l~~~-~-~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l~ 153 (737)
.+.++++|+++.. . .+..+...+... . ....++.+|..+.... ..+....++++..+
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 211 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCC
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcC
Confidence 5689999998422 1 122332222211 1 2233444555433222 12445578999989
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
.++..+++.....+.....+ .....++..+.|+.
T Consensus 212 ~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 212 VKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 99999988876532111111 11344666676654
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.31 E-value=0.00032 Score=79.85 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
..+.++|++|+|||++|+.+++.....-...+.+.+.. +....... .......+. +
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~--------------------~~~l~~~~~---~ 577 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTS--------------------GGQLTEKVR---R 577 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC-----------------------CHHHHH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccc--------------------cchhhHHHH---h
Confidence 37999999999999999999997644334455555221 11111111 000011111 1
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCC-----------CCCCcEEEEEeCCch---------hhhh------cCcccEE
Q 004686 96 RKRVLVILDDVDQLE--QLQALVGNHDW-----------FGFGSRIIITSRDEH---------VLKS------HGVTNTY 147 (737)
Q Consensus 96 ~~~~LlilDd~~~~~--~~~~l~~~l~~-----------~~~~~~iliTtR~~~---------~~~~------~~~~~~~ 147 (737)
...-+|+||+++... ....++..+.. ......||+||.... +... .+....+
T Consensus 578 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i 657 (758)
T 3pxi_A 578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEII 657 (758)
T ss_dssp CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEE
Confidence 233489999996553 23333322211 123557888887311 0011 1334588
Q ss_pred EcCCCChhhHHHHHhhhc
Q 004686 148 KVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 148 ~l~~l~~~~~~~l~~~~~ 165 (737)
.+.++++++..+++....
T Consensus 658 ~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ECC--CHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 999999999998887654
No 233
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.29 E-value=0.0001 Score=72.11 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 92 (737)
+..+++.|+|++|+|||++|.+++.. . ...+.|+.. ...+.+. .. . .+.+...+.+.+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~-~--G~~VlyIs~----~~eE~v~-----------~~--~--~~le~~l~~i~~ 178 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA-L--GGKDKYATV----RFGEPLS-----------GY--N--TDFNVFVDDIAR 178 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH-H--HTTSCCEEE----EBSCSST-----------TC--B--CCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh-C--CCCEEEEEe----cchhhhh-----------hh--h--cCHHHHHHHHHH
Confidence 34467899999999999999999986 1 224566652 0011100 00 0 233344444555
Q ss_pred HhcCCeEEEEEcCCCCh
Q 004686 93 RLCRKRVLVILDDVDQL 109 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~ 109 (737)
.+...+ ++|+|++...
T Consensus 179 ~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHCS-EEEEECCTTT
T ss_pred HHhhCC-EEEEeccccc
Confidence 555555 9999998654
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.28 E-value=2.4e-05 Score=68.30 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.-|.|+|++|+|||++|+.++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 358899999999999999998754
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.00066 Score=64.88 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=32.1
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.+.+++.++-+.-.+++|.|++|+||||+++.++......-..++|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344444433233368999999999999999999975543333455554
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.0051 Score=59.46 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=74.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc-C
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC-R 96 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~ 96 (737)
++|+|++|+||||+++.++..... ..+.+.. . ++ ... . .......+..+.+... .
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~----~------~~----~~~-~------~~~~~~~i~~~~~~~~~~ 107 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV---PFITASG----S------DF----VEM-F------VGVGAARVRDLFETAKRH 107 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH----H------HH----HHS-C------TTHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH----H------HH----HHH-H------hhHHHHHHHHHHHHHHhc
Confidence 999999999999999999987642 2333331 0 00 000 0 0001111223333332 3
Q ss_pred CeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCcEEEEEeCCchhhh-----hcCcccEEEcCCCC
Q 004686 97 KRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKVRGLD 153 (737)
Q Consensus 97 ~~~LlilDd~~~~~----------------~~~~l~~~l~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l~ 153 (737)
.+.++++|+++... ....+...+... .....++.+|..+.... ..+....++++..+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 187 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcC
Confidence 56899999984321 122332222111 12234444555443322 12345578899889
Q ss_pred hhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
.++..++++....+.....+ .....+++.+.|.-
T Consensus 188 ~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 188 VKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 99888988766522111111 11345666666653
No 237
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.26 E-value=0.0024 Score=64.98 Aligned_cols=164 Identities=7% Similarity=-0.004 Sum_probs=101.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhcccChHHHHHHHHHHHhhccccccc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (737)
++.+.+.+ .-.++..++|+.|.||++.++.++..+. ..|+....+. .....+++++...+...
T Consensus 8 ~l~~~l~~--~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---------- 71 (343)
T 1jr3_D 8 QLRAQLNE--GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM---------- 71 (343)
T ss_dssp THHHHHHH--CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH----------
T ss_pred HHHHHHhc--CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc----------
Confidence 45555552 3457999999999999999999998654 3444321121 11124444444333221
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCC-h--HHHHHHhcCCCCCCCCcEEEEEeCC-------chhhhh-cCcccEEEcC
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQ-L--EQLQALVGNHDWFGFGSRIIITSRD-------EHVLKS-HGVTNTYKVR 150 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~-~--~~~~~l~~~l~~~~~~~~iliTtR~-------~~~~~~-~~~~~~~~l~ 150 (737)
-+-+++-++|+|+++. . ...+++...+...++++.+|+++.. ..+... .....+++..
T Consensus 72 -----------plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 72 -----------SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp -----------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred -----------CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 1235677889999865 3 4456665555444567777776643 122222 2334578999
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 195 (737)
+++.++..+.+.+.+... .....++.++.+++.++|....+..
T Consensus 141 ~l~~~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQL--NLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCCTTHHHHHHHHHHHHT--TCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhchHHHHHHH
Confidence 999999998888776322 2234456788899999998876654
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.19 E-value=0.00062 Score=68.55 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=56.9
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc---
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--- 78 (737)
.|...|. .+-+.-+++.|+|++|+|||||+..++......-..++|+. ....... . .++.++.....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId----~E~s~~~--~---ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID----AEHALDP--V---YAKNLGVDLKSLLI 118 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCH--H---HHHHHTCCGGGCEE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cccccch--H---HHHHcCCchhhhhh
Confidence 3445554 44445589999999999999999999987654434567775 2211221 1 33444333221
Q ss_pred -cccchhhhHHHHHHHhc-CCeEEEEEcCCCCh
Q 004686 79 -IIWDVHKGINLIRWRLC-RKRVLVILDDVDQL 109 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~l~-~~~~LlilDd~~~~ 109 (737)
.+.+.++....+...++ .+.-++|+|.+...
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 119 SQPDHGEQALEIVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTC
T ss_pred hhccCHHHHHHHHHHHhhhcCCCeEEehHhhhh
Confidence 11233444444444443 44568899987543
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00058 Score=78.62 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=67.8
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc------Cc-eEEEeecchhhcccChHHHHHHHHHHHhhc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EA-SSFLANVREVSVTRGLVPLQEQLLSEVLME 75 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 75 (737)
++.+.+... ..+.++|+|++|+|||++|+.++..+.... .. ++++. +. .+.. . .
T Consensus 181 ~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~------~l~~----g--~- 241 (854)
T 1qvr_A 181 RVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ----MG------SLLA----G--A- 241 (854)
T ss_dssp HHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC----C--------------------
T ss_pred HHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee----hH------Hhhc----c--C-
Confidence 344444432 223578999999999999999999764321 22 23332 11 0000 0 0
Q ss_pred ccccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH---------H-HHHHhcCCCCCCCCcEEEEEeCCchh-----h
Q 004686 76 RDLIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE---------Q-LQALVGNHDWFGFGSRIIITSRDEHV-----L 138 (737)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~l~--~~~~LlilDd~~~~~---------~-~~~l~~~l~~~~~~~~iliTtR~~~~-----~ 138 (737)
....+.......+.+.+. +++.+|++|+++... + ...+...+. ..+..+|.+|..... .
T Consensus 242 --~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 242 --KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp ------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTC
T ss_pred --ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccC
Confidence 000112222333333332 367999999997653 1 111111111 123445555543322 1
Q ss_pred hhc-CcccEEEcCCCChhhHHHHHhhh
Q 004686 139 KSH-GVTNTYKVRGLDYVEALQLFHLK 164 (737)
Q Consensus 139 ~~~-~~~~~~~l~~l~~~~~~~l~~~~ 164 (737)
... +....+.+++.+.++..++++..
T Consensus 318 ~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 318 PALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp TTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111 22235889999999999999754
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.12 E-value=0.0015 Score=72.97 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=81.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
..+-|+++||+|+|||++|+.++.+....| +.+....-.+.+. .+.+..+..+.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk~~---------------------gese~~lr~lF~~ 292 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLA---------------------GESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSSCT---------------------THHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcccc---------------------hHHHHHHHHHHHH
Confidence 357899999999999999999998764332 2333110011100 1111222223332
Q ss_pred -hcCCeEEEEEcCCCChH-------------HHHHHhcCCCC--CCCCcEEEEEeCCch-hhh----hcCcccEEEcCCC
Q 004686 94 -LCRKRVLVILDDVDQLE-------------QLQALVGNHDW--FGFGSRIIITSRDEH-VLK----SHGVTNTYKVRGL 152 (737)
Q Consensus 94 -l~~~~~LlilDd~~~~~-------------~~~~l~~~l~~--~~~~~~iliTtR~~~-~~~----~~~~~~~~~l~~l 152 (737)
.+..+.+|++|+++..- ....++..+.. ...+..||.||.... +.. ..+.+..++++.-
T Consensus 293 A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~P 372 (806)
T 3cf2_A 293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372 (806)
T ss_dssp HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCC
T ss_pred HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCC
Confidence 34568999999985331 12233322211 123444555555432 222 1244567899988
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.++..++++..........+ .....|++++.|.-
T Consensus 373 d~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 373 DATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp CHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 999999999876533211111 12456788887764
No 241
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.11 E-value=0.00027 Score=69.23 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
+-+.|+|++|+|||++|+.++......| +.+. +..... ..... .........+. ...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~----~~~~~~----------~~~~~---~~~~~~~~~~~---a~~ 101 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMG----GSSFIE----------MFVGL---GASRVRDLFET---AKK 101 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCC----SCTTTT----------SCSSS---CSSSSSTTHHH---HHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCE---EEec----hHHHHH----------hhcch---HHHHHHHHHHH---HHh
Confidence 3488999999999999999999764332 1121 110000 00000 00111111222 222
Q ss_pred CCeEEEEEcCCCChHH-----------------HHHHhcCCCCC---CCCcEEEEEeCCchhh-----hhcCcccEEEcC
Q 004686 96 RKRVLVILDDVDQLEQ-----------------LQALVGNHDWF---GFGSRIIITSRDEHVL-----KSHGVTNTYKVR 150 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~-----------------~~~l~~~l~~~---~~~~~iliTtR~~~~~-----~~~~~~~~~~l~ 150 (737)
.++.+|++|+++.... +..++..+... .....||.||...... ...+....+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 4567999999965421 22233222211 1224566666644211 111234467888
Q ss_pred CCChhhHHHHHhhhc
Q 004686 151 GLDYVEALQLFHLKV 165 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~ 165 (737)
..+.++..+++....
T Consensus 182 ~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 182 KPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCTTTHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 889999999998765
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.11 E-value=0.0013 Score=64.00 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=56.8
Q ss_pred hhHHhhh----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc--cCceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~----~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
.|...|. .+-+.- ++.|+|++|+|||||+.+++...... -..++|++ . .+++.+. .++.++.+.
T Consensus 13 ~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId----~--E~s~~~~---ra~~lGvd~ 82 (333)
T 3io5_A 13 MMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD----S--EFGITPA---YLRSMGVDP 82 (333)
T ss_dssp HHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE----S--SCCCCHH---HHHHTTCCG
T ss_pred HHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe----c--cchhhHH---HHHHhCCCH
Confidence 4555665 554444 79999999999999999998866543 34567766 2 2222221 255555443
Q ss_pred ccc----ccchhhh-HHHHHHH--h-cCCeEEEEEcCCCCh
Q 004686 77 DLI----IWDVHKG-INLIRWR--L-CRKRVLVILDDVDQL 109 (737)
Q Consensus 77 ~~~----~~~~~~~-~~~l~~~--l-~~~~~LlilDd~~~~ 109 (737)
+.. +.+.++. ...+... + +++.-++|+|.+...
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEeccccc
Confidence 321 1233333 2222222 2 356789999998654
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.0033 Score=71.60 Aligned_cols=142 Identities=12% Similarity=0.072 Sum_probs=74.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
++.+.+... ...-++|+|++|+|||++|+.++..+... ....+|......... .
T Consensus 197 ~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~----------------~-- 256 (758)
T 1r6b_X 197 RAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA----------------G-- 256 (758)
T ss_dssp HHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C----------------C--
T ss_pred HHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc----------------c--
Confidence 344444432 23467899999999999999999976432 122233221110000 0
Q ss_pred cccccchhhhHHHHHHHhc-CCeEEEEEcCCCCh----------HHHHHHhcCCCCCCCCcEEEEEeCCchhhhh-----
Q 004686 77 DLIIWDVHKGINLIRWRLC-RKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKS----- 140 (737)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~-~~~~LlilDd~~~~----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~----- 140 (737)
.......+.....+.+.+. .++.+|++|+++.. .+...++..+.. ..+..+|.+|........
T Consensus 257 ~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTT
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCH
Confidence 0001122222333333333 45789999999765 223333433332 234456666654322111
Q ss_pred --cCcccEEEcCCCChhhHHHHHhhhc
Q 004686 141 --HGVTNTYKVRGLDYVEALQLFHLKV 165 (737)
Q Consensus 141 --~~~~~~~~l~~l~~~~~~~l~~~~~ 165 (737)
.+....+.+++.+.++..+++....
T Consensus 336 aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 336 ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1112268899999999999987643
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.04 E-value=0.011 Score=67.15 Aligned_cols=134 Identities=11% Similarity=0.055 Sum_probs=68.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhccc------CceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
++.+.+.... ..-+.++|++|+|||++|+.++..+.... ...++..+ + ... .
T Consensus 191 ~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~---~-------------g~~----~ 248 (758)
T 3pxi_A 191 RVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD---M-------------GTK----Y 248 (758)
T ss_dssp HHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------------------
T ss_pred HHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec---c-------------ccc----c
Confidence 4455554422 23578999999999999999999764321 11222110 0 000 0
Q ss_pred cccccchhhhHHHH-HHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhhh------hc-CcccEEE
Q 004686 77 DLIIWDVHKGINLI-RWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLK------SH-GVTNTYK 148 (737)
Q Consensus 77 ~~~~~~~~~~~~~l-~~~l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~~-~~~~~~~ 148 (737)
..+.+..+..+ .+....++.+|++|. ..+....+.+.+. .....+|.||....... .. +....+.
T Consensus 249 ---~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~ 321 (758)
T 3pxi_A 249 ---RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQ 321 (758)
T ss_dssp -------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEE
T ss_pred ---cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEE
Confidence 00111122222 223336778999992 2222333433332 23456666666543111 11 1124689
Q ss_pred cCCCChhhHHHHHhhhc
Q 004686 149 VRGLDYVEALQLFHLKV 165 (737)
Q Consensus 149 l~~l~~~~~~~l~~~~~ 165 (737)
++..+.++..+++....
T Consensus 322 v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 322 VDQPSVDESIQILQGLR 338 (758)
T ss_dssp CCCCCHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.04 E-value=0.0026 Score=64.44 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc------ccCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~------~f~~~~~~~ 50 (737)
.|..++.++-+.-.++.|+|++|+|||++|..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 455555555556689999999999999999999986432 224567776
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=0.0054 Score=64.89 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc-
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC- 95 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~- 95 (737)
-|+|+|++|+|||+||+.++..... ..+++... .+.. ....... ..+..+.+..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~g~-~~~~-~~~g~~~-------------------~~v~~lfq~a~~ 121 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFVE-MFVGVGA-------------------ARVRDLFETAKR 121 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTC---CEEEEEGG-GGTS-SCTTHHH-------------------HHHHHHTTTSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---CEEEEehh-HHHH-hhhhhHH-------------------HHHHHHHHHHHh
Confidence 3999999999999999999987642 23344311 1100 0000000 11111222221
Q ss_pred CCeEEEEEcCCCCh----------------HHHHHHhcCCCC--CCCCcEEEEEeCCchhhh-----hcCcccEEEcCCC
Q 004686 96 RKRVLVILDDVDQL----------------EQLQALVGNHDW--FGFGSRIIITSRDEHVLK-----SHGVTNTYKVRGL 152 (737)
Q Consensus 96 ~~~~LlilDd~~~~----------------~~~~~l~~~l~~--~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~l 152 (737)
..+.++++|+++.. ..+..++..+.. ......++.+|..+.... ..+.+..+.++..
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 24579999998432 113333332221 123344555555443322 1234557889988
Q ss_pred ChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCCc
Q 004686 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (737)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 190 (737)
+.++..+++.....+.....+ .....+++.+.|+.
T Consensus 202 d~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred CHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 999999998766532111111 12345667777765
No 247
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0011 Score=71.86 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...++++|++|+|||++|+.++.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999997643
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.0009 Score=66.64 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=32.7
Q ss_pred HHhhhcCCCC-eEEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEe
Q 004686 5 NGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (737)
Q Consensus 5 ~~~l~~~~~~-~~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~ 50 (737)
.+++....+. .+.+.|+|++|+|||+||+.++.... .....++++.
T Consensus 141 ~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 141 LDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455543222 46899999999999999999999765 4444455554
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.98 E-value=0.00017 Score=67.52 Aligned_cols=111 Identities=14% Similarity=-0.045 Sum_probs=60.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc-ccchhhhHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-IWDVHKGINLIRW 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~ 92 (737)
.-.+++++|+.|+||||++..++.+...+...+.++... . +-+ -..+++..++...... .....+..+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~--~----d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK--I----DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--C----CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec--c----Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 347999999999999999999999776554445554311 0 000 1112333332221111 1122233333333
Q ss_pred HhcCC-eEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 004686 93 RLCRK-RVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD 134 (737)
Q Consensus 93 ~l~~~-~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~ 134 (737)
...+. .-+||+|.++.. +.++.+.. +. +.+..|++|.+.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLD 125 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCS
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEecc
Confidence 33333 459999998643 33333322 22 137789999984
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.0021 Score=61.77 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.7
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc------ccCceEEEe
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~------~f~~~~~~~ 50 (737)
..|.+++..+-+.-.++.|.|++|+||||+++.++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3455666544444469999999999999999999985322 134567765
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.002 Score=65.37 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=55.2
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccc----
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 77 (737)
.|..++. .+-+.-+++.|+|++|+|||++|..++......-..++|+. .. .+..+. .++.++.+.+
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~----~E--~s~~~~---~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID----AE--HALDPV---YARALGVNTDELLV 131 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SS--CCCCHH---HHHHTTCCGGGCEE
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE----CC--CChhHH---HHHHcCCCHHHcee
Confidence 3444454 34344468999999999999999999886654445678876 22 222222 1333332221
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
..+.+.++....+....+ .+.-+||+|.+.
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 112233444445554443 344589999874
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.90 E-value=0.00075 Score=65.27 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEe
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~ 50 (737)
.+++.++-+.-.+++|.|++|+|||||++.++.... ..-..++|+.
T Consensus 20 D~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334433333346999999999999999999985322 2233455554
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.89 E-value=0.0013 Score=67.85 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+.++|++|+|||++|+.++....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999763
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.87 E-value=0.0023 Score=64.34 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=56.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc------cCceEEEeecchhhcccChHHHHHHHHHHHhhcc
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 76 (737)
.|..++.++-+.-.++.|+|++|+|||++|..++...... -..++|+. .....+..++. ++++.++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~----~e~~~~~~~l~-~~~~~~g~~~ 169 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID----TEGTFRWERIE-NMAKALGLDI 169 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE----SSSCCCHHHHH-HHHHHTTCCH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE----CCCCCCHHHHH-HHHHHhCCCH
Confidence 3445554443444699999999999999999999865322 24567766 22222233333 3344433221
Q ss_pred c--------ccccchh---hhHHHHHHHhc--CCeEEEEEcCCCCh
Q 004686 77 D--------LIIWDVH---KGINLIRWRLC--RKRVLVILDDVDQL 109 (737)
Q Consensus 77 ~--------~~~~~~~---~~~~~l~~~l~--~~~~LlilDd~~~~ 109 (737)
. ..+.+.+ +.+..+...++ .+.-+||+|.+...
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1 0111112 23334444443 46678999988543
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.0031 Score=59.97 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=28.2
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|.+.+..+-+.-.+++|.|++|+||||+++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445554444445799999999999999999998743
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.66 E-value=0.0027 Score=64.23 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=34.8
Q ss_pred hHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 4 MNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 4 l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
|..++. .+-+.-+++.|+|++|+||||+|..++......-..++|+.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 444454 34444579999999999999999999986654444677876
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.64 E-value=0.0055 Score=61.17 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=42.8
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
.|.+++ .+-+.-.++.|.|++|+|||++|..++..+...-..++|+. ...+..++.+.+...
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 345555 44444469999999999999999999986543335566654 346667777666654
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.64 E-value=0.0028 Score=64.13 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc---
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--- 78 (737)
.|..++. .+-+.-+++.|+|++|+||||+|..++......-..++|+.. .. ...+. .++.++...+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~----E~--~~~~~---~a~~lG~~~~~l~i 118 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA----EH--ALDPE---YAKKLGVDTDSLLV 118 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES----SC--CCCHH---HHHHTTCCGGGCEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC----CC--CcCHH---HHHHcCCCHHHeEE
Confidence 3444554 344445799999999999999999999866544456777762 22 12211 23333322211
Q ss_pred -cccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 004686 79 -IIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~l~-~~~~LlilDd~~ 107 (737)
.+.+.++....+....+ .+.-+||+|.+.
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred ecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 11233344444444443 345699999873
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.63 E-value=0.0044 Score=62.31 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=28.7
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|..++..+-+.-.++.|+|++|+|||++|..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555444455899999999999999999998753
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.58 E-value=0.0054 Score=61.96 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
-+.++|++|+|||++|+.++.....
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 6899999999999999999987643
No 261
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.53 E-value=0.00029 Score=64.23 Aligned_cols=108 Identities=17% Similarity=0.049 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc-cccchhhhHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVHKGINLIRWRL 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l 94 (737)
++++++|+.|+||||++.+++.+....-..+.++..... .. ... .++...++..... ...+. ..+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d-~r-~~~----~~i~s~~g~~~~~~~~~~~----~~~~~~~ 73 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID-SR-YHS----TMIVSHSGNGVEAHVIERP----EEMRKYI 73 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CC----CEECC----CEECEEESSG----GGGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc-cc-cCc----ccEEecCCCceeeEEECCH----HHHHHHh
Confidence 488999999999999998888765433223333321100 00 000 0011111111100 00111 1222333
Q ss_pred cCCeEEEEEcCCCCh-HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 95 CRKRVLVILDDVDQL-EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 95 ~~~~~LlilDd~~~~-~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.++.-+|++|+++.. .+|...+..+. ..+..|++|.+..
T Consensus 74 ~~~~dvviIDE~Q~~~~~~~~~l~~l~--~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNPSLFEVVKDLL--DRGIDVFCAGLDL 113 (184)
T ss_dssp CTTEEEEEECCGGGSCTTHHHHHHHHH--HTTCEEEEEEESB
T ss_pred cCCCCEEEEECcccCCHHHHHHHHHHH--HCCCCEEEEeecc
Confidence 345679999998665 23333333222 2377788888853
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.47 E-value=0.02 Score=51.49 Aligned_cols=20 Identities=50% Similarity=0.743 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVL 35 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~ 35 (737)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 263
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.014 Score=66.39 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHH-H
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-W 92 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~ 92 (737)
..+.|+|+|++|+|||++|+.++......| +.+....-.. .... .....+..+. .
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~~l~~--~~~g-------------------~~~~~l~~vf~~ 292 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMS--KLAG-------------------ESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHHHHSS--SSTT-------------------HHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEchHhhh--hhhh-------------------hHHHHHHHHHHH
Confidence 345799999999999999999998654332 3333100000 0000 1111111122 2
Q ss_pred HhcCCeEEEEEcCCCCh---------H----HHHHH---hcCCCCCCCCcEEEEEeCCch-hhhhc----CcccEEEcCC
Q 004686 93 RLCRKRVLVILDDVDQL---------E----QLQAL---VGNHDWFGFGSRIIITSRDEH-VLKSH----GVTNTYKVRG 151 (737)
Q Consensus 93 ~l~~~~~LlilDd~~~~---------~----~~~~l---~~~l~~~~~~~~iliTtR~~~-~~~~~----~~~~~~~l~~ 151 (737)
.....+.++++|+++.. + ....+ ..... ......++.||.... +.... +....+.+..
T Consensus 293 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~ 371 (806)
T 1ypw_A 293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371 (806)
T ss_dssp HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCC
T ss_pred HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCC
Confidence 22345789999998322 0 11222 22221 123445555555432 21111 2334678888
Q ss_pred CChhhHHHHHhhhc
Q 004686 152 LDYVEALQLFHLKV 165 (737)
Q Consensus 152 l~~~~~~~l~~~~~ 165 (737)
.+.++..+++...+
T Consensus 372 p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 372 PDATGRLEILQIHT 385 (806)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH
Confidence 88999999988665
No 264
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.33 E-value=0.003 Score=66.94 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
-|.++|++|+|||++|+.++....
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 689999999999999999998653
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.01 Score=58.54 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...+|.|+|++|+||||++..++...+..-..+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4589999999999999999999987654433344443
No 266
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.31 E-value=0.0064 Score=69.19 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+.++|++|+|||++|+.++...
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999999977
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.31 E-value=0.026 Score=55.31 Aligned_cols=30 Identities=33% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+...+|+|.|++|+||||+|+.++..+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678999999999999999999988654
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.22 E-value=0.017 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|+|.|++|+||+|.|+.++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 269
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.17 E-value=0.0078 Score=69.25 Aligned_cols=35 Identities=40% Similarity=0.330 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+.|+|++|+|||++|+.++......-...+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 58999999999999999999997644323345554
No 270
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.15 E-value=0.016 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
....++|+|.|++|+||||.|+.++...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999999865
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.10 E-value=0.002 Score=58.37 Aligned_cols=29 Identities=45% Similarity=0.616 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccC
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~ 44 (737)
|.|+|+||+|+|||||++++..+..+.|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 56899999999999999999887654443
No 272
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.09 E-value=0.019 Score=60.07 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=40.7
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
|.+++ .+-..-.++.|.|++|+|||++|..++..+...-..++|+. ...+..++...+...
T Consensus 187 LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 187 LDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 247 (444)
T ss_dssp HHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SSSCTTHHHHHHHHH
T ss_pred HHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CCCCHHHHHHHHHHH
Confidence 44444 34444469999999999999999999986644333466643 345556666655543
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.08 E-value=0.015 Score=59.72 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc------ccCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~------~f~~~~~~~ 50 (737)
.|.++|..+-+.-.++.|+|++|+|||||+..++..... .-..++|+.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 445555444444469999999999999999988753321 223467765
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.02 E-value=0.0031 Score=57.11 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+|+|.|++|+||||+++.++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998764
No 275
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.99 E-value=0.0062 Score=60.48 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+..++|+|+|.|||||||++..++..+.+.-..+..++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35699999999999999999999987766545566665
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.97 E-value=0.017 Score=58.45 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=29.5
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|..+|..+-+.-.++.|+|++|+|||||++.++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555555556899999999999999999999865
No 277
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.96 E-value=0.023 Score=55.91 Aligned_cols=36 Identities=28% Similarity=0.221 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++.+.|++|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999999999999987654434455554
No 278
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.93 E-value=0.026 Score=56.33 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
|.+++. +-..-.++.|.|++|+|||++|..++..+...-..++|+. ...+..++...++..
T Consensus 36 LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 36 LDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp HHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred HHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 444442 3333369999999999999999999986554334455643 356677777776654
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.0075 Score=57.92 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.|.+++..+-+.-.++.|.|++|+||||++.+++......-..++|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 455555544444469999999999999999999876544444567765
No 280
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0054 Score=59.06 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=39.6
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH-HhcccCceEEEeecchhhcccChHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLANVREVSVTRGLVPLQEQL 68 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 68 (737)
.|.+++.++-+.-.++.|.|++|+|||++|.+++.. ..+.-..++|+. ...+..++.+.+
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s------~E~~~~~~~~~~ 78 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT------LEERARDLRREM 78 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE------SSSCHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec------ccCCHHHHHHHH
Confidence 455566555445579999999999999999998764 333344556644 244555555444
No 281
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.88 E-value=0.0055 Score=57.07 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.8
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
|.+.+....+...+|+|.|++|+|||||++.++..+.
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3333333234557999999999999999999998654
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.88 E-value=0.03 Score=58.90 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=42.3
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
.|.+++ .+-+.-.++.|.|++|+|||++|..++..+... -..++|+. ...+..++...+...
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHH
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 344445 444445699999999999999999999866432 33566654 345666777666544
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.82 E-value=0.0047 Score=56.01 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=29.6
Q ss_pred hhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 2 ~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
+.+..++.. -|....+.++||+|+|||++|..+++.++.
T Consensus 46 ~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 46 GALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345556654 344456999999999999999999997753
No 284
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.78 E-value=0.031 Score=60.02 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=42.2
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
|.+++ .+-+.-.++.|.|++|+|||++|..++..+... -..++|+. ...+..++.+.++..
T Consensus 232 LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 232 INDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGL 293 (503)
T ss_dssp HHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHH
T ss_pred hhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHH
Confidence 44444 334445799999999999999999999876544 34566754 345666777666544
No 285
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0059 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+|+|.|++|+||||+++.++....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998763
No 286
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.77 E-value=0.023 Score=58.66 Aligned_cols=37 Identities=30% Similarity=0.192 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++|.++|++|+||||++..++..++..-..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999987655433344443
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.75 E-value=0.047 Score=54.29 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...++|.|+|++|+||||++..++..++..-..+.++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34689999999999999999999987655433444443
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.74 E-value=0.015 Score=58.66 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEE-EeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF-LANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+++|.|+.|+||||+++.++..+.......++ +....+.... ... . .........+.......+...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~~--------~-~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SKK--------C-LVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CSS--------S-EEEEEEBTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-ccc--------c-ceeeeeeccccCCHHHHHHHHh
Confidence 499999999999999999998865433222222 2211111000 000 0 0000000011223345677778
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCchhh
Q 004686 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVL 138 (737)
Q Consensus 95 ~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~ 138 (737)
...+=+|++|+..+.+.++.+.... ..|..+++|+......
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8888899999998777665544331 3477788888875443
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.73 E-value=0.01 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.+|+|.|++|+||||+++.++..+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999997754
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.73 E-value=0.036 Score=57.62 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~~~ 50 (737)
..++|.++|.+|+||||++..++..++.. -..+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46899999999999999999999977654 33444444
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.70 E-value=0.012 Score=65.73 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=65.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
.+-|.++||+|+|||.+|+.++...... ++. ++ .. +++.... .+.+..+..+.+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~----v~----~~----~l~s~~v-------Gese~~vr~lF~~A 566 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----IK----GP----ELLTMWF-------GESEANVREIFDKA 566 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE----CC----HH----HHHTTTC-------SSCHHHHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc-----eEE----ec----cc----hhhcccc-------chHHHHHHHHHHHH
Confidence 4568999999999999999999976432 222 11 01 1111100 01122233333333
Q ss_pred -cCCeEEEEEcCCCChH----------------HHHHHhcCCCCC-CCCcEEEE-EeC-Cch----hhhhcCcccEEEcC
Q 004686 95 -CRKRVLVILDDVDQLE----------------QLQALVGNHDWF-GFGSRIII-TSR-DEH----VLKSHGVTNTYKVR 150 (737)
Q Consensus 95 -~~~~~LlilDd~~~~~----------------~~~~l~~~l~~~-~~~~~ili-TtR-~~~----~~~~~~~~~~~~l~ 150 (737)
+..+.+|.+|+++..- ....++..+... .....+++ ||- ... +....+.+..+.++
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-
T ss_pred HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEEC
Confidence 3578999999985320 133333332211 12223443 333 222 22222456678888
Q ss_pred CCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHhCCC
Q 004686 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (737)
Q Consensus 151 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 189 (737)
.-+.++..++|+........... ...+.+++.+.|.
T Consensus 647 lPd~~~R~~il~~~l~~~~~~~~---~dl~~la~~t~g~ 682 (806)
T 3cf2_A 647 LPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGF 682 (806)
T ss_dssp ----CHHHHTTTTTSSCC--CCC----------------
T ss_pred CcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHhCCCC
Confidence 77777888888766532211111 1234566666654
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.70 E-value=0.039 Score=55.03 Aligned_cols=28 Identities=39% Similarity=0.406 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+++|+|+.|+||||+++.++...+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999999986543
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.70 E-value=0.011 Score=54.64 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999998765
No 294
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.66 E-value=0.039 Score=57.19 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
.+.|+|++|+|||+|+..++......+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 689999999999999999998655433
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.61 E-value=0.01 Score=52.49 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEE
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSF 48 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~ 48 (737)
..+++.|.|++|+||||++.+++..++.. +...++
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 35789999999999999999999877544 444333
No 296
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.61 E-value=0.027 Score=51.64 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
.|+|.|..|+||||.++.+++.+++....+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999887654444443
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.61 E-value=0.029 Score=57.97 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
...+|.++|++|+||||++.+++..++..-..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998766543334443
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.58 E-value=0.0068 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.|+|.|++|+||||+++.++...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.52 E-value=0.0076 Score=55.65 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.++|+|.|++|+||||+++.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.51 E-value=0.069 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999999866
No 301
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.48 E-value=0.031 Score=57.67 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
...+|.++|++|+||||++..++..++..-..+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357999999999999999999998766543334444
No 302
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.47 E-value=0.0066 Score=55.13 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=30.1
Q ss_pred CCCCccEEEccCCCCCcc----cCcccCCCCcccEEEccCc---cCc-----ccCcccccCCCCcEEEccCCC
Q 004686 492 LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGT---AIR-----QIPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~---~~~-----~l~~~~~~l~~L~~L~l~~~~ 552 (737)
.-+.|++|+|++|.+... +...+..-+.|++|+++++ .+. .+...+..-+.|+.|+++.+.
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344555555555555431 2233444445666666543 222 233344555666666665443
No 303
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.46 E-value=0.021 Score=57.20 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..+.|+|++|+|||||++.++..+.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 58999999999999999999886644
No 304
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.44 E-value=0.0088 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+|+|.|++|+||||+|++++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999988
No 305
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.43 E-value=0.017 Score=53.36 Aligned_cols=38 Identities=34% Similarity=0.353 Sum_probs=28.5
Q ss_pred hhHHhhhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 3 KMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 3 ~l~~~l~~-~~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++.+.+.. ..+...+|+|.|++|+||||+++.++..+.
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444443 234558999999999999999999998654
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.018 Score=52.44 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+|+|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999997654
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.41 E-value=0.0069 Score=55.24 Aligned_cols=28 Identities=46% Similarity=0.648 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
++++|.|+.|+||||+++.++......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998665433
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.0078 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++++|+|++|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.36 E-value=0.012 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|.|++|+||||+++.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999999865
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.023 Score=52.96 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
.+|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999977543
No 311
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.26 E-value=0.016 Score=70.70 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=56.2
Q ss_pred hHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc----
Q 004686 4 MNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---- 78 (737)
Q Consensus 4 l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---- 78 (737)
|..++. .+-+..+.|.|+||+|+|||+||.+++......-..++|+. +....+.. . ++.++.+.+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l--~---a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI--Y---ARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHH--H---HHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHH--H---HHHcCCCchhceee
Confidence 445555 44445679999999999999999999987655545677765 32222222 2 3443322111
Q ss_pred cccchhhhHHHHHHHh-cCCeEEEEEcCCC
Q 004686 79 IIWDVHKGINLIRWRL-CRKRVLVILDDVD 107 (737)
Q Consensus 79 ~~~~~~~~~~~l~~~l-~~~~~LlilDd~~ 107 (737)
.+...+.....+.+.. ..+.-+||+|.+.
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1122334444444443 2567799999983
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.24 E-value=0.078 Score=56.04 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++|.|+|.+|+||||++.+++..++..-..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999987655423344443
No 313
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.23 E-value=0.049 Score=57.46 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=38.8
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEeecchhhcccChHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLL 69 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (737)
|.+++ .+-+.-.++.|.|++|+||||++..++..+.. .-..++|+. ...+..++.+.+.
T Consensus 193 LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRML 252 (454)
T ss_dssp HHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHH
T ss_pred HHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHH
Confidence 33444 33334469999999999999999999986643 223566654 2345556665554
No 314
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.21 E-value=0.01 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
-.+++|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999874
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.19 E-value=0.072 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
-.++.|+|++|+||||+++.++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999985543
No 316
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.18 E-value=0.051 Score=53.37 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc-ccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~~~~~~ 50 (737)
.++++++|++|+||||++..++..++. .-..+.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 469999999999999999999987653 323444544
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.15 E-value=0.027 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987644
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.12 E-value=0.013 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+|+|.|++|+||||+++.++....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999765
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.10 E-value=0.0099 Score=53.39 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999865
No 320
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.10 E-value=0.011 Score=53.88 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++|+|+||+|+|||||++.++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999997654
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.07 E-value=0.012 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++|+|.||+|+||||+++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998654
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.07 E-value=0.0094 Score=53.98 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.++|+|+|++|+||||+++.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999875
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.07 E-value=0.014 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++|+|.|++|+||||+|+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5799999999999999999998653
No 324
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.06 E-value=0.028 Score=56.27 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=34.9
Q ss_pred hhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 3 ~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++.+++....+-.+++++.|.||+||||+|..++..+.+.-..+..++
T Consensus 2 ~i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 2 AFKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CGGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 345555544333678899999999999999999997766544566655
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.06 E-value=0.013 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+|+|.|+.|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 326
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.05 E-value=0.049 Score=56.29 Aligned_cols=53 Identities=28% Similarity=0.286 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhcccChHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
..++|.|.+|+|||+|+.+++..+. ++-+..+|+.+ -.+...+.++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~i---GER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV---GERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEE---SCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEEC---CCcchHHHHHHHHhhhc
Confidence 4899999999999999999999753 33344555442 12233455666666544
No 327
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.032 Score=47.11 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCcEEecCCCcCCCCCCC-CCCCCCCcEEeccCc
Q 004686 424 ELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (737)
Q Consensus 424 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 456 (737)
+|+.|+|++|.+....+. |..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444544444443332 344444555555544
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.03 E-value=0.021 Score=55.99 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|.|++|+||||+|+.++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998865
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.03 E-value=0.012 Score=54.56 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+|+.++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.02 E-value=0.024 Score=68.34 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc----cccchhhhHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL----IIWDVHKGIN 88 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~ 88 (737)
+.-.+|.|.|++|+||||+|..++......-..++|+. . ..+..++. ++.++.+.+. ...+.++..+
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~--Ees~~ql~---A~~lGvd~~~L~i~~~~~leei~~ 800 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----A--EHALDPIY---ARKLGVDIDNLLCSQPDTGEQALE 800 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----T--TSCCCHHH---HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----c--cchHHHHH---HHHcCCChhheEEecCCcHHHHHH
Confidence 34469999999999999999999987654434567765 2 23333332 4443322111 1123334444
Q ss_pred HHHHHh-cCCeEEEEEcCCCC
Q 004686 89 LIRWRL-CRKRVLVILDDVDQ 108 (737)
Q Consensus 89 ~l~~~l-~~~~~LlilDd~~~ 108 (737)
.+.+.. +.+.-+||+|.+..
T Consensus 801 ~l~~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 801 ICDALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHHccCCCEEEEechhh
Confidence 443332 24566999999854
No 331
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.99 E-value=0.037 Score=46.70 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=42.6
Q ss_pred eeeeecCCCC--CCCCCCCCCCCeeEEccCCcccccccc-ccCCCCCcEEecCCCcCC
Q 004686 382 YLKWHEYPFN--SLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNL 436 (737)
Q Consensus 382 ~L~~~~~~~~--~l~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~ 436 (737)
.++..+..++ .+|..+ +.+|++|+|++|.|+.++.. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666666 777664 34799999999999999865 788999999999998654
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.97 E-value=0.015 Score=55.64 Aligned_cols=26 Identities=23% Similarity=0.057 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|.|++|+||||+|+.++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999865
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.95 E-value=0.016 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
....|+|+|+.|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999986
No 334
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.95 E-value=0.019 Score=59.60 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
.++|.|+|++|+||||++..++...+..-..+.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 469999999999999999999986654333344444
No 335
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.94 E-value=0.056 Score=49.54 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=53.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 94 (737)
-.+.+++|+-|.||||.+...+.+....-..++.+. .. .+-+.-...+...++........+.. ..+.+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k----~~--~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK----PC--IDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE----CC-------------------CCEEECSSG---GGGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----ec--cCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHH
Confidence 478999999999999999999887655444444443 11 11111122344443332221111110 1222333
Q ss_pred cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 004686 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE 135 (737)
Q Consensus 95 ~~~~~LlilDd~~~~--~~~~~l~~~l~~~~~~~~iliTtR~~ 135 (737)
.++--+|++|+++-. +.++.+. .+. +.+..|++|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHH--HTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHh--hCCCEEEEEeccc
Confidence 333349999998443 3343332 211 2477899999964
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.93 E-value=0.059 Score=52.94 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++++++|++|+||||++..++...+..-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3579999999999999999999986654433344443
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.93 E-value=0.018 Score=53.27 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
....+|+|.|++|+||||+++.++...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999999864
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.89 E-value=0.019 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998864
No 339
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.89 E-value=0.016 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 340
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.87 E-value=0.015 Score=52.32 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999875
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.85 E-value=0.015 Score=52.39 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++|.|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998553
No 342
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.84 E-value=0.012 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.++|+|+|++|+||||+++.++....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999998653
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.82 E-value=0.016 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.|+|.|+.|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.81 E-value=0.022 Score=53.14 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..+|+|.|+.|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999976543
No 345
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.77 E-value=0.016 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|+||||+++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.76 E-value=0.02 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+|+.++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998865
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.76 E-value=0.017 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+++.++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999865
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.02 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...|+|.|++|+||||+++.++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.74 E-value=0.027 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.72 E-value=0.014 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++|+|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999999865
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.70 E-value=0.025 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+++.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999865
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.68 E-value=0.015 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++|+|.|++|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999875
No 353
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.64 E-value=0.048 Score=49.83 Aligned_cols=24 Identities=54% Similarity=0.744 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+|+|.|+.|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999764
No 354
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.64 E-value=0.047 Score=56.08 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccC----ceEEEeecchhhcccChHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
..++|.|.+|+|||+|+.++++....+.+ ..+|+.+ -.+...+.++.+++...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~i---GeR~~Ev~e~~~~~~~~ 208 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAI---GITFEEAEFFMEDFRQT 208 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEE---EECHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEe---cCCcHHHHHHHHHHhhc
Confidence 36789999999999999999887654333 3444432 12234455566655443
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.63 E-value=0.045 Score=55.61 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEE
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~ 49 (737)
..+...+|+|+|.+|+||||++..++......-..+..+
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 345678999999999999999999998664433333333
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.60 E-value=0.022 Score=52.70 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
+...+|+|+|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999885
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.59 E-value=0.023 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 358
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.58 E-value=0.014 Score=53.85 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++++|+|++|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987553
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.58 E-value=0.021 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+|+.++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.57 E-value=0.023 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.55 E-value=0.022 Score=54.86 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
....+|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457999999999999999999998653
No 362
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.53 E-value=0.034 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.-.+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999865
No 363
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.53 E-value=0.036 Score=51.30 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-ccCc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEA 45 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~-~f~~ 45 (737)
-.|++.|+||+||||+|..++..... .++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 45889999999999999999986544 4444
No 364
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.51 E-value=0.062 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..|+|.|+.|+||||+++.++..+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999977644
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.49 E-value=0.015 Score=52.84 Aligned_cols=25 Identities=40% Similarity=0.404 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998865
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.47 E-value=0.033 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+++|+|++|+||||+++.++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3469999999999999999999986543
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.46 E-value=0.023 Score=53.64 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|+|++|+||||+++.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998854
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.46 E-value=0.043 Score=59.12 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
...+..+-..-.+++|.|++|+|||||++.++......-..++|+.
T Consensus 271 d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 271 DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3344433333469999999999999999999986543322345553
No 369
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.43 E-value=0.022 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998855
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.41 E-value=0.024 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998865
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.40 E-value=0.071 Score=54.37 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHh-hcccccccchhhhHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~l~~~ 93 (737)
-.+++|+|+.|+||||+++.++..+.......+++... ... .... .... ........+.......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e--~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIE--YVFK-------HKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCC--SCCC-------CSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHh--hhhc-------cCceEEEeeecCCCHHHHHHHHHHH
Confidence 46899999999999999999998654332333332210 000 0000 0000 00000000112334456666
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCch
Q 004686 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEH 136 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 136 (737)
+...+=++++|++.+.+.+....... ..|..++.|+....
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 66677799999997666544333221 34666777777543
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.40 E-value=0.024 Score=52.76 Aligned_cols=27 Identities=48% Similarity=0.516 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+|+|.|+.|+||||+++.++....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 373
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.39 E-value=0.11 Score=53.96 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+...+|+|+|++|+||||+|++++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998754
No 374
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.35 E-value=0.047 Score=54.27 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..++|+|+|.||+||||+|..++..+.+.-..+..++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999997765544555555
No 375
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.35 E-value=0.037 Score=49.37 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.++++|.|++|+||||++..++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999986643
No 376
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.34 E-value=0.023 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~ 37 (737)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999987
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.33 E-value=0.024 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..|+|.|++|+||||+|+.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999875
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.33 E-value=0.025 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..+|+|.|++|+||||+++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.32 E-value=0.036 Score=51.60 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..+|+|.|+.|+||||+++.++..+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987643
No 380
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.30 E-value=0.054 Score=51.01 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999998765
No 381
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.30 E-value=0.023 Score=58.16 Aligned_cols=25 Identities=40% Similarity=0.369 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+.|.++|++|+|||++|+.++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999976
No 382
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.29 E-value=0.055 Score=50.01 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=27.2
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGIC-GMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~-G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++|+|+ +.||+||||+|..++..+.+.-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577777 67899999999999997766544566665
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.29 E-value=0.025 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.28 E-value=0.019 Score=53.99 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.28 E-value=0.047 Score=49.18 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..+|+|.|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998664
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.26 E-value=0.22 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
+.+.+.|+.|+|||+++..+..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4899999999999987776654
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.25 E-value=0.028 Score=52.13 Aligned_cols=25 Identities=48% Similarity=0.583 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
...+|+|+|++|+||||+++.++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998874
No 388
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.24 E-value=0.023 Score=50.87 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVL 35 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~ 35 (737)
-.+++|.|++|+||||+++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 369999999999999999964
No 389
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.20 E-value=0.035 Score=52.94 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=28.3
Q ss_pred hHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 4 l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+..|+....+...-|.++||+|+|||.+|..+++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 456666643444579999999999999999999853
No 390
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.19 E-value=0.023 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
.+++|.||+|+|||||++.++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5999999999999999999988654
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.18 E-value=0.026 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 392
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.18 E-value=0.28 Score=46.32 Aligned_cols=100 Identities=19% Similarity=0.118 Sum_probs=53.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc-c---------------c
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-I---------------W 81 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~---------------~ 81 (737)
+.|+|+.|.|||.+|..++.... ..++++. . ..+++.++.+.+.. .... . .
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~---~~~liv~-----P----~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~ 177 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELS---TPTLIVV-----P----TLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVS 177 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSC---SCEEEEE-----S----SHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcC---CCEEEEe-----C----CHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEE
Confidence 88999999999999998887641 2334432 1 12344455444332 1100 0 0
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCcEEEEEeCC
Q 004686 82 DVHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD 134 (737)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~LlilDd~~~~~~--~~~l~~~l~~~~~~~~iliTtR~ 134 (737)
..+. +....+.+..+--+||+|++..... +..+...+. ...++.+|...
T Consensus 178 T~~~-l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSATp 228 (237)
T 2fz4_A 178 TYDS-AYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTATF 228 (237)
T ss_dssp EHHH-HHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEESC
T ss_pred eHHH-HHhhHHHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecCC
Confidence 0111 1122223334456999999976532 555555442 34456666654
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.17 E-value=0.11 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
..++|.|++|+|||+|+.++++.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 48899999999999999999986643
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.17 E-value=0.047 Score=53.79 Aligned_cols=28 Identities=39% Similarity=0.409 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999986543
No 395
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.13 E-value=0.026 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|.|+.|+|||||++.++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 396
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.12 E-value=0.19 Score=47.82 Aligned_cols=50 Identities=2% Similarity=-0.096 Sum_probs=38.5
Q ss_pred ChhhHHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 1 ~~~l~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+..|.++|.++-+.-+++.|.|.+|.|||+++.+++..-.+.-+.++++.
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~ 56 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 34577888888888899999988888888999999875444456667755
No 397
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.12 E-value=0.02 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
+|+|.|+.|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999987643
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.09 E-value=0.053 Score=66.34 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=56.7
Q ss_pred hhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccc---
Q 004686 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (737)
Q Consensus 3 ~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--- 78 (737)
.|..++. .+-+.-+++.|+|++|+|||++|..++......-..++|+. . ..+..++. ++.++.+.+.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis----~--E~s~~~~~---a~~lGvd~~~L~I 440 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----A--EHALDPIY---ARKLGVDIDNLLC 440 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----T--TSCCCHHH---HHHTTCCTTTCEE
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----c--CCCHHHHH---HHHcCCCHHHeEE
Confidence 3444554 34444579999999999999999999987665445677765 2 22233222 4444432211
Q ss_pred -cccchhhhHHHHHHHh-cCCeEEEEEcCCC
Q 004686 79 -IIWDVHKGINLIRWRL-CRKRVLVILDDVD 107 (737)
Q Consensus 79 -~~~~~~~~~~~l~~~l-~~~~~LlilDd~~ 107 (737)
.+.+.++..+.+.... +.+.-+||+|.+.
T Consensus 441 ~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 441 SQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 1223444444444333 2455699999873
No 399
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.09 E-value=0.05 Score=52.88 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++|+|.|.||+||||+|..++..+.+.-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999997765544555554
No 400
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.08 E-value=0.051 Score=50.10 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccC
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~ 44 (737)
+.|+|.|..|+||||+++.++..+.+.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999998865544
No 401
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.04 E-value=0.07 Score=55.41 Aligned_cols=52 Identities=29% Similarity=0.244 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh-cccCceEEEeecchhhcccChHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (737)
..++|.|.+|+|||+|+.+++..+. ++-+..+|+.+ -.+...+.++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~i---GER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGV---GERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEE---SCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEc---ccCcHHHHHHHHhhhc
Confidence 4799999999999999999999753 44455566542 1223345556666654
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.04 E-value=0.027 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...|+|.|++|+||||+++.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999864
No 403
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.04 E-value=0.053 Score=65.45 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=36.6
Q ss_pred hhhHHhhh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 2 ~~l~~~l~-~~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..|.++|. .+-+.-+++.|+|++|+|||++|.+++......-..++|+.
T Consensus 20 ~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~ 69 (1706)
T 3cmw_A 20 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 69 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEE
Confidence 34556665 45455679999999999999999999885544445678876
No 404
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.03 E-value=0.03 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++|+|.||.|+|||+||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999999864
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.01 E-value=0.032 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++|+|.|+.|+||||+|+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 6899999999999999999998753
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.97 E-value=0.085 Score=52.04 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccC-ceEEEe
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLA 50 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~-~~~~~~ 50 (737)
-.+++|.|++|+||||+++.++..+..... .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 359999999999999999999986643322 455554
No 407
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.96 E-value=0.024 Score=53.02 Aligned_cols=24 Identities=46% Similarity=0.685 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+++|+|++|+|||||++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 408
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.96 E-value=0.037 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...++|+|.||.|+|||+||..++...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 345799999999999999999999864
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.96 E-value=0.034 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|++|+||||+++.++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 410
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.95 E-value=0.032 Score=53.58 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|+.|+||||+++.++..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 411
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.93 E-value=0.061 Score=53.78 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+++++.|.||+||||+|..++..+.+.-..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999999999999998776555566665
No 412
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.93 E-value=0.039 Score=54.59 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.....+|+|.|++|+||||+++.+......
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345679999999999999999999886653
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.93 E-value=0.036 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|.|+.|+||||+++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999998854
No 414
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.92 E-value=0.034 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|+|..|+||||+++.++...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999999863
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.91 E-value=0.035 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHH
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
+...+|+|+|+.|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999983
No 416
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.90 E-value=0.084 Score=53.33 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+..+++++.|.||+||||+|..++..+.+.-..+..++
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3455678889999999999999999987665534455544
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.85 E-value=0.043 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998664
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.83 E-value=0.032 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+|+|.|++|+||||+|+.++....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 458999999999999999999998653
No 419
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.79 E-value=0.083 Score=49.20 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
....|+|.|+.|+||||+++.+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999997754
No 420
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.79 E-value=0.034 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
+++|+|+.|+||||+++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.79 E-value=0.064 Score=50.18 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
-..|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999977653
No 422
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.78 E-value=0.035 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..|+|.|+.|+||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999865
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.77 E-value=0.036 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.366 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++|+|+|+.|+||||+|+.++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999999999999865
No 424
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.75 E-value=0.038 Score=54.76 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
....+|+|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4457999999999999999999988654
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.74 E-value=0.04 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.71 E-value=0.078 Score=51.19 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...++++.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998766
No 427
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.71 E-value=0.066 Score=53.83 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=30.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh--cccCceEEEe
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~--~~f~~~~~~~ 50 (737)
+..+++++.|.||+||||+|..++..+. ..-..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3457999999999999999999998776 5544555555
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.70 E-value=0.04 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999865
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.70 E-value=0.092 Score=48.62 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..|++.|+.|+||||+++.++..+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999977543
No 430
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.69 E-value=0.062 Score=54.10 Aligned_cols=28 Identities=39% Similarity=0.409 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+++|+|+.|+||||+++.++...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999986543
No 431
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.67 E-value=0.09 Score=52.58 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcccccccchhhhHHHHHHHhc
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 95 (737)
.+++|+|+.|+||||+++.++..+.. ....+.+......... ... +.+.. .. .........+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~-------~~i~~-~~---ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK-------NYTQL-FF---GGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS-------SEEEE-EC---BTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch-------hEEEE-Ee---CCChhHHHHHHHHhh
Confidence 48999999999999999999875432 2344555432211100 000 00000 00 012233445555666
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCc-EEEEEeCCc
Q 004686 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGS-RIIITSRDE 135 (737)
Q Consensus 96 ~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~-~iliTtR~~ 135 (737)
.++=++++|++...+.++.+... ..|. -+++|+...
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~~----~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNVL----CSGHKGTLTTLHAG 275 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHHH----HTTCCCEEEEEECS
T ss_pred hCCCEEEEcCCChHHHHHHHHHH----hcCCCEEEEEEccc
Confidence 77889999999775555544332 2233 366666654
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.65 E-value=0.029 Score=50.87 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred cCccccceeccccc-cccc----cCccccCCCCCccEEEccCCCCCcc----cCcccCCCCcccEEEccCccCc-----c
Q 004686 467 GTLKRLILLNLKDC-RNLV----SFPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIR-----Q 532 (737)
Q Consensus 467 ~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-----~ 532 (737)
.+-+.|+.|++++| .+.. .+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.++ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666654 3211 2344556667888888888887642 3344556678999999999998 4
Q ss_pred cCcccccCCCCcEEEccCCC
Q 004686 533 IPPSIVQLVNLKIFSLHGCK 552 (737)
Q Consensus 533 l~~~~~~l~~L~~L~l~~~~ 552 (737)
+...+...+.|+.|+++++.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 45566677889999998754
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.65 E-value=0.027 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
++|+|.||.|+|||+|+..++.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999999865
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.64 E-value=0.059 Score=51.84 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=57.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhc-ccChHHHHHHHHHHHhhcccccccchhhhHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV-TRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 93 (737)
-.+++|+|+.|+||||+++.++......+...+++... .+.. ......+ +.+... ..+.......+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~~-------v~q~~~--gl~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKSI-------VNQREV--GEDTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSSE-------EEEEEB--TTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCccee-------eeHHHh--CCCHHHHHHHHHHH
Confidence 36999999999999999999988554332344443211 0000 0000000 000000 00111223444455
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCCch
Q 004686 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEH 136 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 136 (737)
+..++=++++|+..+.+......... ..|..|++||....
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 55566688899997655543332221 34667888887654
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.60 E-value=0.028 Score=55.16 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998654
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.59 E-value=0.042 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..|+|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 437
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.57 E-value=0.067 Score=50.07 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhccc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f 43 (737)
..++|+|+|.+|+||||++.+++......+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~ 58 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEV 58 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCC
Confidence 468999999999999999999998764443
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.56 E-value=0.045 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+|+|.|+.|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999865
No 439
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.55 E-value=0.065 Score=52.70 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
++|+|.|.||+||||+|..++..+.+.-..+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68888999999999999999997765433455554
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.51 E-value=0.072 Score=50.06 Aligned_cols=29 Identities=38% Similarity=0.457 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
..++|+|+|.+|+||||++.+++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46889999999999999999999865433
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.51 E-value=0.1 Score=49.14 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcc-cCceEE
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSF 48 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~-f~~~~~ 48 (737)
...|+|.|+.|+||||+++.++..+... +..++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~ 61 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR 61 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeee
Confidence 3689999999999999999999977543 442433
No 442
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.48 E-value=0.034 Score=53.06 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
.+|+|.|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999865
No 443
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.47 E-value=0.05 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.45 E-value=0.036 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+.|+|.|++|+|||++|.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 679999999999999999999854
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.37 E-value=0.029 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH-HHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLY-NTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~-~~~ 39 (737)
.+++|.|+.|+||||+++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 643
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.37 E-value=0.027 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++++|+|++|+|||||++.++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999988554
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.31 E-value=0.049 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
..|+|.|++|+||||+|+.++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 448
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.31 E-value=0.067 Score=53.27 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
.+..+.|+|.|++|+||||+++.++..+.-.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3455779999999999999999999865433
No 449
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.27 E-value=0.08 Score=50.73 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
|+|.|.||+||||+|..++..+.+.-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998766544555555
No 450
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.21 E-value=0.078 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+++|+|++|+||||+++.++..++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999999986653
No 451
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.12 E-value=0.08 Score=54.36 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
..++|.|.+|+|||+|+.+++++..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3678999999999999999988654
No 452
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.07 E-value=0.4 Score=51.20 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
...+|+++|.+|.||||+|++++..+.-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3478999999999999999999987643
No 453
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.02 E-value=0.052 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 454
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.00 E-value=0.061 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
++|+|.||.|+|||+||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998763
No 455
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.99 E-value=0.045 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999875
No 456
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.97 E-value=0.086 Score=54.79 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHH-HHHHHHhcccCce-EEEeecchhhcccChHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAK-VLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLS 70 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~-~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 70 (737)
..++|.|.+|+|||+||. .++++. +-+.+ +|+.+ -.+...+.++.+++..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~i---GeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAI---GQKQSTVAGVVETLRQ 214 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEE---SCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEEC---CCcchHHHHHHHHHhh
Confidence 478999999999999965 555543 23432 44432 1123345555555544
No 457
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.96 E-value=0.078 Score=54.84 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccc----CceEEEeecchhhcccChHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF----EASSFLANVREVSVTRGLVPLQEQLLSE 71 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (737)
..++|.|.+|+|||+|+.+++....... +..+|+.+ -.+...+.++.+++...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~i---GER~~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAM---GITNEEAQYFMSDFEKT 209 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEE---EECHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEc---cCCcHHHHHHHHHHHhc
Confidence 3678899999999999999998654211 23444432 11233455666666543
No 458
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.93 E-value=0.042 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.175 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~ 38 (737)
+++|.|+.|+|||||++.++--
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999864
No 459
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.92 E-value=0.045 Score=51.35 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.84 E-value=0.061 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+|+|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999884
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.77 E-value=0.062 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
...|+|.|++|+|||||++.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 462
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.71 E-value=0.12 Score=51.75 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
..+++++.|.||+||||+|..++..+.+.-..+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4568888999999999999999997766544555554
No 463
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.71 E-value=0.08 Score=53.78 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 11 ~~~~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
+-+..++++|+|++|+||||+++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34455699999999999999999999754
No 464
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.70 E-value=0.073 Score=52.80 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 13 ~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
....+|+|.|+.|+||||+++.++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988664
No 465
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.67 E-value=0.092 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.+-|.++|++|+|||++|+.++.....
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356999999999999999999997644
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.65 E-value=0.14 Score=52.30 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCeEEEEEEc-CCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 12 LDDVRFIGICG-MGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 12 ~~~~~~i~i~G-~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
....++|+|+| .||+||||+|..++..+...-..++.++
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34568888886 9999999999999987665544566665
No 467
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.61 E-value=0.24 Score=45.82 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhccccc-ccchhhhHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-IWDVHKGINLIRWR 93 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~ 93 (737)
..+.+++|+-|.||||-+...+.+....-..++.+.-. .....+ . .+...++...... ....++..+ .
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~--~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~----~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA--KDTRYS-S----SFCTHDRNTMEALPACLLRDVAQ----E 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET--TCCCC----------------CEEEEESSGGGGHH----H
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec--CCccch-H----HHHhhcCCeeEEEecCCHHHHHH----H
Confidence 47999999999999998888887665444444444311 111111 2 3444433222111 112222222 2
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCcEEEEEeCC
Q 004686 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRD 134 (737)
Q Consensus 94 l~~~~~LlilDd~~~~~~~~~l~~~l~~~~~~~~iliTtR~ 134 (737)
. ++--+|++|+++-......+...+. ..|-.||+|.++
T Consensus 88 ~-~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 88 A-LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp H-TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred h-ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 2 3334999999743322333332222 257789999998
No 468
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.60 E-value=0.055 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|+|||||++.++--
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 469
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.53 E-value=0.085 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
..|+|.|++|+|||||+..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 470
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.51 E-value=0.056 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999875
No 471
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.50 E-value=0.081 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
+.|+|.|.+|+||||++.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999986
No 472
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.49 E-value=0.15 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHHh
Q 004686 16 RFIGICGMGGIGKTTLA-KVLYNTLK 40 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la-~~~~~~~~ 40 (737)
..++|.|.+|+|||+|| ..++++..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 47899999999999995 46666554
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.47 E-value=0.076 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~ 39 (737)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999865
No 474
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.47 E-value=0.068 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 475
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.44 E-value=0.12 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 004686 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~~~~~~ 42 (737)
.++|.|++|+|||+++..++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999876544
No 476
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.44 E-value=0.17 Score=51.11 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh--cccCceEEEe
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~~~~--~~f~~~~~~~ 50 (737)
...++++.|.||+||||+|..++..+. +.-..+..++
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 346888889999999999999999877 5544555554
No 477
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.42 E-value=0.058 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 478
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.42 E-value=0.1 Score=54.32 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCcHHHHHH-HHHHHHhcccCce-EEEeecchhhcccChHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAK-VLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLS 70 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~-~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 70 (737)
..++|.|.+|+|||+||. .++++. .-+.+ +|+.+ -.+...+.++.+++..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~I---GeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAI---GQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEE---SCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEc---CCCcHHHHHHHHHHHh
Confidence 478999999999999965 555543 23432 44432 1223345555555544
No 479
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.40 E-value=0.16 Score=51.07 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~~ 41 (737)
.....+|+|.|++|+||||++..++...+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999876543
No 480
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.40 E-value=0.069 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|+|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.40 E-value=0.08 Score=50.38 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 482
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.36 E-value=0.051 Score=50.42 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999876
No 483
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.36 E-value=0.078 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 004686 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 15 ~~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
...|+|.|++|+|||||++.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999873
No 484
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.31 E-value=0.062 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 485
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.25 E-value=0.063 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999985
No 486
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.24 E-value=0.063 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999885
No 487
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.24 E-value=0.064 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|+|||||++.++--
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 488
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.24 E-value=0.064 Score=51.12 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 489
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.22 E-value=0.064 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 490
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.22 E-value=0.07 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 491
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.18 E-value=0.39 Score=61.08 Aligned_cols=145 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcccCceEEEeecchhhcccChHHHHHHHHHHHhhcc-----------cccccchhhh
Q 004686 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-----------DLIIWDVHKG 86 (737)
Q Consensus 18 i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~~ 86 (737)
|.++||+|+|||++|+.++....+ -..+.+. ++...+...+++.+...+.... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~--------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD--------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS---------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eecCCCHHHHHHHHHHHhhhccccCCccccCCCC---------
Q ss_pred HHHHHHHhcCCeEEEEEcCC--------CChHHHHHHhcCCCCCC------------CCcEEEEEeCCc------hhhhh
Q 004686 87 INLIRWRLCRKRVLVILDDV--------DQLEQLQALVGNHDWFG------------FGSRIIITSRDE------HVLKS 140 (737)
Q Consensus 87 ~~~l~~~l~~~~~LlilDd~--------~~~~~~~~l~~~l~~~~------------~~~~iliTtR~~------~~~~~ 140 (737)
+++.++.+||+ ......+.+...+-..+ ....+|.++-+. .+...
T Consensus 1335 ---------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1335 ---------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ---------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ---------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Q ss_pred c-CcccEEEcCCCChhhHHHHHhhhccCCCCCChHHHHHHHHHHHHh
Q 004686 141 H-GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYA 186 (737)
Q Consensus 141 ~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (737)
. +....+.++..++++-.++|.....+.....+.....++.++..+
T Consensus 1406 llRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1406 FTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp HHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred hhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 492
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.11 E-value=0.068 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 493
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.10 E-value=0.1 Score=52.90 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcccCceEEEe
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~~~~~f~~~~~~~ 50 (737)
+++++.|.||+||||+|..++..+.+.-..+..++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 68899999999999999999987765545566665
No 494
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.03 E-value=0.19 Score=50.33 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 004686 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (737)
Q Consensus 12 ~~~~~~i~i~G~~G~GKT~la~~~~~~~~ 40 (737)
-....+++|.|++|+|||||.+.++....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34557999999999999999999987543
No 495
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.00 E-value=0.071 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYNT 38 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~~ 38 (737)
.+++|.|+.|+|||||++.++--
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999998763
No 496
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.98 E-value=0.073 Score=48.12 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 004686 17 FIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 17 ~i~i~G~~G~GKT~la~~~~~ 37 (737)
.|+|.|.+|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.96 E-value=0.062 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred HHhhhcCCCCeEEEEEEcCCCCcHHHHHHHHHH
Q 004686 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 5 ~~~l~~~~~~~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+.|........+++|.|+.|+|||||.+.++-
T Consensus 59 ~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 333443334556999999999999999999986
No 498
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.91 E-value=0.073 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.89 E-value=0.074 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 004686 16 RFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 16 ~~i~i~G~~G~GKT~la~~~~~ 37 (737)
.+++|.|+.|+|||||++.++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 500
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.84 E-value=0.13 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 004686 14 DVRFIGICGMGGIGKTTLAKVLYN 37 (737)
Q Consensus 14 ~~~~i~i~G~~G~GKT~la~~~~~ 37 (737)
....|+|.|.+|+|||||+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999986
Done!