Query 004688
Match_columns 737
No_of_seqs 322 out of 1992
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 02:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 5.2E-56 1.8E-60 532.3 54.0 509 19-714 65-583 (802)
2 2z86_A Chondroitin synthase; G 99.8 2.4E-18 8.1E-23 200.3 18.6 211 93-484 91-337 (625)
3 1xhb_A Polypeptide N-acetylgal 99.8 3.8E-18 1.3E-22 192.1 19.0 238 91-507 25-300 (472)
4 3bcv_A Putative glycosyltransf 99.8 2.5E-18 8.6E-23 174.4 14.3 109 93-312 3-111 (240)
5 1qg8_A Protein (spore coat pol 99.7 1.7E-18 5.7E-23 177.6 8.5 217 95-494 1-234 (255)
6 2d7i_A Polypeptide N-acetylgal 99.7 2.3E-17 7.7E-22 190.7 15.0 238 92-507 109-378 (570)
7 2ffu_A Ppgalnact-2, polypeptid 99.7 8.5E-17 2.9E-21 182.7 14.5 113 91-313 62-174 (501)
8 2z86_A Chondroitin synthase; G 99.7 1.4E-16 4.6E-21 185.5 13.9 221 93-500 373-598 (625)
9 3ckj_A Putative uncharacterize 99.6 2.9E-15 9.8E-20 161.2 13.9 122 93-326 46-170 (329)
10 3l7i_A Teichoic acid biosynthe 99.5 2.5E-15 8.6E-20 178.4 0.0 110 95-313 2-111 (729)
11 4fix_A UDP-galactofuranosyl tr 99.5 9.9E-14 3.4E-18 162.6 11.9 123 93-323 178-303 (657)
12 3f1y_A Mannosyl-3-phosphoglyce 99.4 2.1E-12 7.2E-17 142.3 14.7 120 94-324 93-216 (387)
13 2fy7_A Beta-1,4-galactosyltran 99.4 8.2E-13 2.8E-17 139.9 10.1 62 439-500 189-263 (287)
14 2nxv_A ATP synthase subunits r 99.1 3.3E-10 1.1E-14 116.9 12.9 46 268-322 62-112 (249)
15 2bo4_A Mannosylglycerate synth 98.7 1.9E-07 6.4E-12 103.0 15.8 42 265-311 73-119 (397)
16 2zu9_A Mannosyl-3-phosphoglyce 98.0 1.9E-05 6.5E-10 86.3 11.0 37 266-308 143-182 (394)
17 2wvl_A Mannosyl-3-phosphoglyce 97.9 8.9E-05 3E-09 79.4 13.1 44 93-145 51-94 (391)
18 1fo8_A Alpha-1,3-mannosyl-glyc 97.7 9.4E-05 3.2E-09 79.9 9.3 46 94-144 1-46 (343)
19 3lw6_A FI08434P, beta-4-galact 70.3 21 0.00073 37.0 10.2 53 448-500 185-250 (287)
20 3q80_A 2-C-methyl-D-erythritol 48.2 40 0.0014 33.4 7.7 45 268-312 83-127 (231)
21 3d5n_A Q97W15_sulso; NESG, SSR 26.0 1.4E+02 0.0046 28.3 7.1 42 266-310 71-112 (197)
22 3f1c_A Putative 2-C-methyl-D-e 24.5 62 0.0021 32.0 4.5 46 267-312 84-132 (246)
23 2j0a_A Beta-1,3-N-acetylglucos 21.9 93 0.0032 31.8 5.3 30 283-314 92-121 (280)
24 2y6p_A 3-deoxy-manno-octuloson 21.2 1.1E+02 0.0037 29.5 5.4 42 265-312 71-113 (234)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=5.2e-56 Score=532.29 Aligned_cols=509 Identities=20% Similarity=0.294 Sum_probs=388.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhheeccccCCCCCCCCCCCCCce
Q 004688 19 LNKLHAFLHCIAIALLIYYRASYLLQET-RAISIIPWLLVFASELLLSFIWLLGRAYLWRPVSRTVFPERLPEDDKLPAI 97 (737)
Q Consensus 19 ~~r~~~~~~~~~~~~yl~wR~~~~~~~~-~~~~~~~w~~~~~~E~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~P~V 97 (737)
+..+++++.+++.+.|++||++.+++.. ...+.++|++++++|+++.+.+++..+..++|..|...++. .+++.|+|
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~P~V 142 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--QPEELPTV 142 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC--CTTTCCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC--CccCCCcE
Confidence 3444455555556789999999999864 34567888899999999999999999999999988765543 24678999
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCcccccc
Q 004688 98 DVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQAYFS 177 (737)
Q Consensus 98 dV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p~~yf~ 177 (737)
+|+||| |||+++++++|+.|+++++||+++++|+|+|||++|.|.+.
T Consensus 143 SViIPt---yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------------ 189 (802)
T 4hg6_A 143 DILVPS---YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------------ 189 (802)
T ss_dssp EEEEEC---TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------------
T ss_pred EEEEEE---CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc------------------------------
Confidence 999999 99998888999999999999999999999999999977531
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcEEEEec
Q 004688 178 EAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLLVYVSR 257 (737)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l~yi~R 257 (737)
.+++.+++..+..+..+++..+ .++.|+.|
T Consensus 190 --------~d~~i~~~~~~~~~~l~~~~~~------------------------------------------~~v~~i~~ 219 (802)
T 4hg6_A 190 --------PDPELAQKAQERRRELQQLCRE------------------------------------------LGVVYSTR 219 (802)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHH------------------------------------------HTCEEEEC
T ss_pred --------CCHHHHHHHHhhhHHHHHHHHh------------------------------------------cCcEEEEe
Confidence 1122222211111111111110 12568888
Q ss_pred cCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhh-cCCCCCCceEEEccCceeccCCcC--
Q 004688 258 EKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFH-LDPKTSSSLAFVQFPQKFHNFNEH-- 334 (737)
Q Consensus 258 ~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f-~D~~~~~~vg~VQtPq~f~n~~~~-- 334 (737)
+++ +++|+||+|.|++. ++||+|+++|||++++ |+++++++.+| .||+ +++||+++.+.|.+..
T Consensus 220 ~~~----~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp~----v~~V~~~~~~~~~~~~~~ 286 (802)
T 4hg6_A 220 ERN----EHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDPD----LFLVQTPHFFINPDPIQR 286 (802)
T ss_dssp SSC----CSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSSS----CCEEECCCCBSSCCHHHH
T ss_pred cCC----CCcchHHHHHHHHh----cCCCEEEEECCCCCcC-hHHHHHHHHHHhcCCC----eEEEeccEEEeCCchHhh
Confidence 764 68999999999999 8999999999999975 99999999999 4776 9999999999875310
Q ss_pred -----ChHHHHHHHhhhhHHhHhhhcCCcccccccceeehhhccCCccccccchHhhHhhhcCchhHHHhhhhhcccccc
Q 004688 335 -----DIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKNV 409 (737)
Q Consensus 335 -----d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~ 409 (737)
+.+.++.+.++...+.+.+.+++++++|+++++||+++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~------------------------------------ 330 (802)
T 4hg6_A 287 NLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD------------------------------------ 330 (802)
T ss_dssp HHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH------------------------------------
T ss_pred hhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHH------------------------------------
Confidence 112234467788899999999999999999999999992
Q ss_pred CCccchhhHHHhhhhhccccccccccccccccccCCCccchHHHHHHHHHCCCEEEEeCCCCCeeEeccCCCHHHHHHHh
Q 004688 410 NGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQG 489 (737)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sltED~~t~~~l~~~Gwrs~y~~~~~~~~~g~aP~tl~~~~~Qr 489 (737)
+.+||++++++||.+++++++++||++.|+++ +.+++.+|+|+.++++||
T Consensus 331 ----------------------------~vGgf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr 380 (802)
T 4hg6_A 331 ----------------------------EAGGFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQR 380 (802)
T ss_dssp ----------------------------HHTTCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHH
T ss_pred ----------------------------HcCCcCCCCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHH
Confidence 24789999999999999999999999999986 789999999999999999
Q ss_pred HHHhcchhhhHHhhcCCcccCCCCCchHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHcCCCccccccchhHHHHHHHH
Q 004688 490 TRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVFSFIF 569 (737)
Q Consensus 490 ~RWa~G~~qi~~~~~~pl~~~~~~L~~~qrl~Y~~~~~~~~l~~~~~l~~~~~P~~~ll~g~~~~~~~~~~~~~~~~~~~ 569 (737)
.||++|.+|+++ +++|++. +++++.||++|+....++ +.+++.++++++|++++++|++++......++.++++.+
T Consensus 381 ~RW~~G~~q~l~-~~~pl~~--~~l~~~~rl~~l~~~~~~-~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~ 456 (802)
T 4hg6_A 381 GRWATGMMQMLL-LKNPLFR--RGLGIAQRLCYLNSMSFW-FFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYL 456 (802)
T ss_dssp HHHHHHHHHHHH-HSCTTSC--SSCCHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHH-HhCcccc--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHH
Confidence 999999999998 5678773 789999999999988888 888999999999999999999887654444433333332
Q ss_pred HHHHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccCCcchhhhhhccccceeeecc
Q 004688 570 LSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTS 649 (737)
Q Consensus 570 ~~~~~~~ll~~~~~g~~~~~w~~~~~~w~i~~~~~~~~~~~~~l~~~lg~~~~~F~VT~K~~~~~~~~~y~~~~f~f~~~ 649 (737)
+... .+.... .+.....||+... .+...++.+..++..++++++.+|+||+|+.+.++ +. |
T Consensus 457 l~~~--~~~~~~-~~~~r~~~~~~l~-----~~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~------~~--~--- 517 (802)
T 4hg6_A 457 AVSF--LVQNAL-FARQRWPLVSEVY-----EVAQAPYLARAIVTTLLRPRSARFAVTAKDETLSE------NY--I--- 517 (802)
T ss_dssp HHHH--HHHHHH-HTTTSCTTHHHHH-----HHHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSS------CC--B---
T ss_pred HHHH--HHHHHH-hcCcHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCcceECCCCccccc------cc--h---
Confidence 2211 111222 3444445666532 23244555666777888999999999999976543 11 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 004688 650 SVFLVPMVSLMILNVAALVCGVIRMIAVG-NWDKLFAQVLLSLYILIINFAIVEGMIVRKDKGRIS 714 (737)
Q Consensus 650 ~~~~~P~~~l~~l~l~al~~gi~r~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~al~~r~~k~~~p 714 (737)
+.+++|++++++++++++++|++++.... ......++.+|++++++.+.+.+...+-|+.+++-|
T Consensus 518 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~~R~~~ 583 (802)
T 4hg6_A 518 SPIYRPLLFTFLLCLSGVLATLVRWVAFPGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRAAP 583 (802)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCCSCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 35788999999999999999999987543 234456677788888777777666655554444433
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.78 E-value=2.4e-18 Score=200.31 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=144.8
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCc
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p 172 (737)
..|.|+|+||| |||+ +.+.+|+.++++++||. .++|+|+|||++|.|.+.+.+..
T Consensus 91 ~~p~vsviIp~---~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~~~-------------------- 145 (625)
T 2z86_A 91 IIDGLSIVIPT---YNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVREFE-------------------- 145 (625)
T ss_dssp CCCCEEEEEEE---SSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHTTT--------------------
T ss_pred cCCcEEEEEec---CCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHHhh--------------------
Confidence 35899999999 9997 79999999999999986 69999999999997643221100
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcE
Q 004688 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLL 252 (737)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l 252 (737)
..+.+
T Consensus 146 ---------------------------------------------------------------------------~~~~i 150 (625)
T 2z86_A 146 ---------------------------------------------------------------------------SLLNI 150 (625)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01235
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCceEEEccCceeccC
Q 004688 253 VYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNF 331 (737)
Q Consensus 253 ~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQtPq~f~n~ 331 (737)
.|+.++++ .++|++|+|.|++. ++||+|+++|+|++++ |++|.+++..|. +|. ++.++..+.+.+.
T Consensus 151 ~~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~~~----~~~~g~~~~~~~~ 217 (625)
T 2z86_A 151 KYVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVDDN----VALIGPRKYIDTS 217 (625)
T ss_dssp EEEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHCTT----EEEECCEEEECCT
T ss_pred EEEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCCC-HHHHHHHHHHHhcCCc----eEEEEeeeeccCc
Confidence 67766532 45899999999999 8999999999999975 999999999886 454 7888765554432
Q ss_pred CcCChHHHHH--HHhhh----------------------h---HHhHhhh---cC--CcccccccceeehhhccCCcccc
Q 004688 332 NEHDIYDGSL--RSGYR----------------------L---QWPGMDG---LK--GPFLTGTGHYIRRESLYGNFKHK 379 (737)
Q Consensus 332 ~~~d~~~~~~--~~f~~----------------------~---~~~g~d~---~~--~~~~~Gtg~~~RR~AL~~~~~~~ 379 (737)
. . .+.... ..++. . .....+. .. ...++|++.++||+++.
T Consensus 218 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~------ 289 (625)
T 2z86_A 218 K-H-TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLF------ 289 (625)
T ss_dssp T-C-CHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHH------
T ss_pred c-c-chhhcccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHH------
Confidence 1 1 110000 00000 0 0000000 11 12367888889999882
Q ss_pred ccchHhhHhhhcCchhHHHhhhhhccccccCCccchhhHHHhhhhhccccccccccccccccccCCCc---cchHHHHHH
Q 004688 380 GIDLAELKDTFGESNLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFI 456 (737)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sl---tED~~t~~~ 456 (737)
+.|||+.... .||.++++|
T Consensus 290 ----------------------------------------------------------~iGgfde~~~~~g~ED~dl~~R 311 (625)
T 2z86_A 290 ----------------------------------------------------------RAGWFDEEFTHWGGEDNEFGYR 311 (625)
T ss_dssp ----------------------------------------------------------HHCCCCTTCSSCCCHHHHHHHH
T ss_pred ----------------------------------------------------------HhCCCccccccCCcchhhhhhh
Confidence 2366876654 599999999
Q ss_pred HHHCCCEEEEeCCCCCeeEeccCCCHHH
Q 004688 457 LHCKGWTSTYLDPSRPQFLGTSTTNLND 484 (737)
Q Consensus 457 l~~~Gwrs~y~~~~~~~~~g~aP~tl~~ 484 (737)
++.+||++.|+++ +.++...|.+-..
T Consensus 312 l~~~G~~i~~~p~--~~v~H~~~~~~~~ 337 (625)
T 2z86_A 312 LYREGCYFRSVEG--AMAYHQEPPGKEN 337 (625)
T ss_dssp HHHTTCEEEECGG--GCEEEECCC----
T ss_pred HHhCCceEEEccc--chhhccCCccccc
Confidence 9999999999986 4566666665443
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.77 E-value=3.8e-18 Score=192.06 Aligned_cols=238 Identities=16% Similarity=0.091 Sum_probs=156.1
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCcc-chHhHHHHHHhhhhhhhhhhhccccc
Q 004688 91 DDKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPI-TLRGMREAFRFAKWWIPFCRRYRIKT 169 (737)
Q Consensus 91 ~~~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~-T~~~l~ea~~~a~~w~pfc~~~~v~~ 169 (737)
++.+|.|+|+||+ |||+.+.+.+||.|+++++||...++|+|+|||++|. |.+.+.+..
T Consensus 25 ~~~~p~vSVIIp~---yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------------- 84 (472)
T 1xhb_A 25 PDNLPTTSVVIVF---HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------------- 84 (472)
T ss_dssp CSCCCCEEEEEEE---SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CcCCCCeEEEEEe---CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH-----------------
Confidence 3568999999999 9998679999999999999998778999999999984 643332110
Q ss_pred CCccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhcccccc
Q 004688 170 ICPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEM 249 (737)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (737)
..+
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (472)
T 1xhb_A 85 -----------------------------------------------------------------------------KKL 87 (472)
T ss_dssp -----------------------------------------------------------------------------HSS
T ss_pred -----------------------------------------------------------------------------HHC
Confidence 012
Q ss_pred C-cEEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCceEEEccCce
Q 004688 250 P-LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQK 327 (737)
Q Consensus 250 P-~l~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQtPq~ 327 (737)
| ++.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+. ++. ++.+. ...
T Consensus 88 ~~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~~----~~v~~-~~~ 152 (472)
T 1xhb_A 88 KVPVHVIRMEQ-----RSGLIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDRR----TVVCP-IID 152 (472)
T ss_dssp SSCEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCTT----EEEEE-EEE
T ss_pred CCcEEEEECCC-----CCChHHHHHHHHHh----ccCCeEEEECCCeEeC-ccHHHHHHHHHHhCCC----EEEEe-eee
Confidence 3 467777655 35799999999999 8999999999999965 999999999886 343 44331 111
Q ss_pred eccCCcC------ChHHH--HHHHhhhh------HHhHh--h---hcCCcccccccceeehhhccCCccccccchHhhHh
Q 004688 328 FHNFNEH------DIYDG--SLRSGYRL------QWPGM--D---GLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKD 388 (737)
Q Consensus 328 f~n~~~~------d~~~~--~~~~f~~~------~~~g~--d---~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~ 388 (737)
..+.+.. ..... .....+.. ....+ + ....+...|++.++||+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~--------------- 217 (472)
T 1xhb_A 153 VISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQ--------------- 217 (472)
T ss_dssp EECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHH---------------
T ss_pred eEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHH---------------
Confidence 1111000 00000 00000000 00000 0 12234456667778888872
Q ss_pred hhcCchhHHHhhhhhccccccCCccchhhHHHhhhhhccccccccccccccccccCCCc---cchHHHHHHHHHCCCEEE
Q 004688 389 TFGESNLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFILHCKGWTST 465 (737)
Q Consensus 389 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sl---tED~~t~~~l~~~Gwrs~ 465 (737)
+.+||+++.. .||++.++|+...|+++.
T Consensus 218 -------------------------------------------------~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~ 248 (472)
T 1xhb_A 218 -------------------------------------------------EIGTYDAGMDIWGGENLEISFRIWQCGGTLE 248 (472)
T ss_dssp -------------------------------------------------HTTSCCTTSCTTCCCCSHHHHHHHHTTCEEE
T ss_pred -------------------------------------------------HcCCCCCcccccCchhHHHHHHHHhcCCeEE
Confidence 2356876544 799999999999999999
Q ss_pred EeCCCCCeeE----eccCC----C-----HHHHHHHhHHHhcchhhhHHhhcCCc
Q 004688 466 YLDPSRPQFL----GTSTT----N-----LNDVLIQGTRWASGLIDVSISRFCPL 507 (737)
Q Consensus 466 y~~~~~~~~~----g~aP~----t-----l~~~~~Qr~RWa~G~~qi~~~~~~pl 507 (737)
|++.. ... ...|. . .....+...||..+..+.++. .+|.
T Consensus 249 ~~p~~--~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~~~-~~p~ 300 (472)
T 1xhb_A 249 IVTCS--HVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYI-ISPG 300 (472)
T ss_dssp EEEEE--EEEEEC------------CHHHHHHHHHHHHHHCGGGGHHHHH-TSTT
T ss_pred EccCc--EEEEEccCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hCcc
Confidence 99752 221 11222 1 456677778999999988874 4564
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.77 E-value=2.5e-18 Score=174.42 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=89.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCc
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p 172 (737)
..|.|+|+||+ ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.++
T Consensus 3 ~~p~vsViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~~~~~------------------- 57 (240)
T 3bcv_A 3 LIPKVSVIVPI---YNVE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICDDYAA------------------- 57 (240)
T ss_dssp CCCSEEEEEEE---SSCT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHHHHHH-------------------
T ss_pred CCCcEEEEEec---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECCCCcCHHHHHHHHHh-------------------
Confidence 35899999999 9998 79999999999999984 89999999999987543321110
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcE
Q 004688 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLL 252 (737)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l 252 (737)
..|++
T Consensus 58 ---------------------------------------------------------------------------~~~~i 62 (240)
T 3bcv_A 58 ---------------------------------------------------------------------------QYPNI 62 (240)
T ss_dssp ---------------------------------------------------------------------------HCSSE
T ss_pred ---------------------------------------------------------------------------hCCCE
Confidence 12346
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004688 253 VYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (737)
Q Consensus 253 ~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (737)
.++.. + +.++++|+|.|++. ++||||+++|+|.++. |++|.+++..+.+
T Consensus 63 ~~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 63 KVIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQK 111 (240)
T ss_dssp EEEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHH
T ss_pred EEEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcCC-HHHHHHHHHHHHh
Confidence 67752 2 46899999999999 8999999999999875 9999999998875
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.74 E-value=1.7e-18 Score=177.58 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=138.6
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCccc
Q 004688 95 PAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQA 174 (737)
Q Consensus 95 P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p~~ 174 (737)
|.|+|+||| ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.+
T Consensus 1 p~vSViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~~~---------------------- 52 (255)
T 1qg8_A 1 PKVSVIMTS---YNKS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRPFL---------------------- 52 (255)
T ss_dssp CCEEEEEEE---SSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGGGG----------------------
T ss_pred CeEEEEEEc---CCCH-HHHHHHHHHHHhccCCc--eEEEEEECCCCchHHHHHHHHh----------------------
Confidence 789999999 9998 79999999999999994 8999999999997653221100
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcEEE
Q 004688 175 YFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLLVY 254 (737)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l~y 254 (737)
..|++.|
T Consensus 53 -------------------------------------------------------------------------~~~~i~~ 59 (255)
T 1qg8_A 53 -------------------------------------------------------------------------NDNRVRF 59 (255)
T ss_dssp -------------------------------------------------------------------------GSTTEEE
T ss_pred -------------------------------------------------------------------------hcCCEEE
Confidence 0134667
Q ss_pred EeccCCCC----CCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCceEEEccCceec
Q 004688 255 VSREKSPE----HLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFH 329 (737)
Q Consensus 255 i~R~k~p~----~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQtPq~f~ 329 (737)
+..+.. + ..+.++++|+|.|++. ++||+|+++|+|.++. |++|.+++..+. +|+ +++|.+.....
T Consensus 60 i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~ 129 (255)
T 1qg8_A 60 YQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTHPE----KAVIYSASKTY 129 (255)
T ss_dssp EECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHCTT----CCEEEEEEEEE
T ss_pred Eecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCccC-hHHHHHHHHHHHhCCC----ceEEEeceEEE
Confidence 766510 0 0146899999999999 8999999999999975 999999999886 455 77777665544
Q ss_pred --cCCcCChHHHHHHHhhhhHHhHhhhcCCcccccccceeehhhccCCccccccchHhhHhhhcCchhHHHhhhhhcccc
Q 004688 330 --NFNEHDIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHK 407 (737)
Q Consensus 330 --n~~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~ 407 (737)
+.+.. .... ++... ............|++.++||+++.
T Consensus 130 ~~~~~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~~~~rr~~~~---------------------------------- 169 (255)
T 1qg8_A 130 HLNENRD-IVKE----TVRPA-AQVTWNAPCAIDHCSVMHRYSVLE---------------------------------- 169 (255)
T ss_dssp EEC---C-EEEE----EEECC-CSCBSCCTTTSCGGGEEEETHHHH----------------------------------
T ss_pred EeCCCCc-chhh----ccCch-HHHHHhhcCCCccceEEEEHHHHH----------------------------------
Confidence 22111 1000 00000 000112233456888999999982
Q ss_pred ccCCccchhhHHHhhhhhccccccccccccccc-cc------c-CCCccchHHHHHHHHHCCCEEEEeCCCCCeeEeccC
Q 004688 408 NVNGENLSNVLQQETEVLASCSYEHQTKWGEEV-GF------S-YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTST 479 (737)
Q Consensus 408 ~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~-G~------~-~~sltED~~t~~~l~~~Gwrs~y~~~~~~~~~g~aP 479 (737)
+.+ || + .....||.+..+++..+| +..|+++. ...+-..+
T Consensus 170 ------------------------------~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~~-~~~~r~~~ 217 (255)
T 1qg8_A 170 ------------------------------KVKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDEE-LDLNYITD 217 (255)
T ss_dssp ------------------------------HHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEEE-EEEEEEC-
T ss_pred ------------------------------hhcccccccccCCcccchHHHHHHHHHHHHhC-CEEEecCc-EEEEEEcC
Confidence 112 34 2 234679999999999987 68888762 34455566
Q ss_pred CCHHHHH--HHhHHHhc
Q 004688 480 TNLNDVL--IQGTRWAS 494 (737)
Q Consensus 480 ~tl~~~~--~Qr~RWa~ 494 (737)
.+.+... +|+.||.+
T Consensus 218 ~s~s~~~~~~~~~~~~~ 234 (255)
T 1qg8_A 218 QSIHFQLFELEKNEFVR 234 (255)
T ss_dssp -------------CTGG
T ss_pred CccchhHHHHHHHHHHH
Confidence 6666655 44444443
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.72 E-value=2.3e-17 Score=190.75 Aligned_cols=238 Identities=14% Similarity=0.076 Sum_probs=156.5
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccc-hHhHHHHHHhhhhhhhhhhhcccccC
Q 004688 92 DKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPIT-LRGMREAFRFAKWWIPFCRRYRIKTI 170 (737)
Q Consensus 92 ~~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T-~~~l~ea~~~a~~w~pfc~~~~v~~r 170 (737)
+..|.|+|+||+ |||+.+.+.+||.|+++++||...++|+|+|||++|.| .+.+.+.+
T Consensus 109 ~~~P~vSVIIp~---yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~------------------ 167 (570)
T 2d7i_A 109 ETLPNTSIIIPF---HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYM------------------ 167 (570)
T ss_dssp SSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHH------------------
T ss_pred CCCCCeEEEEEE---CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHH------------------
Confidence 568999999999 99986799999999999999976679999999999977 32221110
Q ss_pred CccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccC
Q 004688 171 CPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMP 250 (737)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P 250 (737)
...|
T Consensus 168 ----------------------------------------------------------------------------~~~~ 171 (570)
T 2d7i_A 168 ----------------------------------------------------------------------------ALFP 171 (570)
T ss_dssp ----------------------------------------------------------------------------TTST
T ss_pred ----------------------------------------------------------------------------HhCC
Confidence 0124
Q ss_pred cEEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCCCCCCceEEEccCceecc
Q 004688 251 LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKTSSSLAFVQFPQKFHN 330 (737)
Q Consensus 251 ~l~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~~~~~~vg~VQtPq~f~n 330 (737)
++.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+.. .+ .|.....+.+
T Consensus 172 ~v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~---~~-vv~~~i~~~~ 237 (570)
T 2d7i_A 172 SVRILRTKK-----REGLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNR---KT-IVCPMIDVID 237 (570)
T ss_dssp TEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCT---TE-EEEEEEEEEC
T ss_pred eEEEEECCC-----CCCHHHHHHHHHHh----cCCCEEEEEcCCcccc-ccHHHHHHHHHHhCC---CE-EEeeeeeccC
Confidence 567776654 46899999999999 8999999999999975 999999999886432 13 3322112221
Q ss_pred CCc-------CChHHH--HHHHhhhhHHhH--------hhhcCCcccccccceeehhhccCCccccccchHhhHhhhcCc
Q 004688 331 FNE-------HDIYDG--SLRSGYRLQWPG--------MDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGES 393 (737)
Q Consensus 331 ~~~-------~d~~~~--~~~~f~~~~~~g--------~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~ 393 (737)
.+. ...... ....++...... ......+...|++.++||+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~-------------------- 297 (570)
T 2d7i_A 238 HDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW-------------------- 297 (570)
T ss_dssp TTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH--------------------
T ss_pred CCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH--------------------
Confidence 100 000000 000011100000 0111233456777788888772
Q ss_pred hhHHHhhhhhccccccCCccchhhHHHhhhhhccccccccccccccccccCCCc---cchHHHHHHHHHCCCEEEEeCCC
Q 004688 394 NLFIKSLHQSYEHKNVNGENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQSV---SEDFFTGFILHCKGWTSTYLDPS 470 (737)
Q Consensus 394 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~sl---tED~~t~~~l~~~Gwrs~y~~~~ 470 (737)
+.+||+.+.. .||+++++|+...||++.|++..
T Consensus 298 --------------------------------------------~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~ 333 (570)
T 2d7i_A 298 --------------------------------------------ELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCS 333 (570)
T ss_dssp --------------------------------------------HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEE
T ss_pred --------------------------------------------hcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCe
Confidence 2356776543 69999999999999999998752
Q ss_pred CCeeE----eccCCC-------HHHHHHHhHHHhcchhhhHHhhcCCc
Q 004688 471 RPQFL----GTSTTN-------LNDVLIQGTRWASGLIDVSISRFCPL 507 (737)
Q Consensus 471 ~~~~~----g~aP~t-------l~~~~~Qr~RWa~G~~qi~~~~~~pl 507 (737)
... +..|.+ .....+-..||....-+.+.. .+|.
T Consensus 334 --~v~H~~r~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~y~-~~p~ 378 (570)
T 2d7i_A 334 --RVGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQ-RRPE 378 (570)
T ss_dssp --EEEECCCSSCCSCCCSSCCHHHHHHHHHHHHCGGGHHHHHT-TCGG
T ss_pred --EEEEEccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 222 122311 456667778999998888774 3453
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.69 E-value=8.5e-17 Score=182.73 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=93.3
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccC
Q 004688 91 DDKLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTI 170 (737)
Q Consensus 91 ~~~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r 170 (737)
++.+|.|+|+||+ |||+...+.+||.|++++.||...++|+|+|||++|.|...+.
T Consensus 62 ~~~~p~vSVIIp~---yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~--------------------- 117 (501)
T 2ffu_A 62 RVDLPATSVVITF---HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL--------------------- 117 (501)
T ss_dssp CSSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG---------------------
T ss_pred CcCCCCEEEEEEe---CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHH---------------------
Confidence 4568999999999 9999548999999999999998667999999999996632100
Q ss_pred CccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccC
Q 004688 171 CPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMP 250 (737)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P 250 (737)
...|
T Consensus 118 ----------------------------------------------------------------------------~~~~ 121 (501)
T 2ffu_A 118 ----------------------------------------------------------------------------GKIE 121 (501)
T ss_dssp ----------------------------------------------------------------------------GGBT
T ss_pred ----------------------------------------------------------------------------hcCC
Confidence 0124
Q ss_pred cEEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCC
Q 004688 251 LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDP 313 (737)
Q Consensus 251 ~l~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~ 313 (737)
++.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+.
T Consensus 122 ~v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 122 KVRVLRNDR-----REGLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAED 174 (501)
T ss_dssp TEEEEECSS-----CCHHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHHC
T ss_pred CEEEEECCC-----CcCHHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhC
Confidence 567777655 46899999999999 8999999999999975 99999999988643
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.68 E-value=1.4e-16 Score=185.50 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=153.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCc
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p 172 (737)
..|.|+|+||| |||+ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+..
T Consensus 373 ~~~~vsiii~~---yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~~~-------------------- 426 (625)
T 2z86_A 373 RVPLVSIYIPA---YNCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQEHY-------------------- 426 (625)
T ss_dssp SSCSEEEEEEE---SSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHHHH--------------------
T ss_pred cCCeEEEEEeC---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHHHHH--------------------
Confidence 46899999999 9998 78999999999999985 8999999999998764332211
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcE
Q 004688 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLL 252 (737)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l 252 (737)
...|++
T Consensus 427 --------------------------------------------------------------------------~~~~~i 432 (625)
T 2z86_A 427 --------------------------------------------------------------------------ANHPRV 432 (625)
T ss_dssp --------------------------------------------------------------------------TTCTTE
T ss_pred --------------------------------------------------------------------------hhCCcE
Confidence 012345
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhc-CCCCCCceEEEccCceeccC
Q 004688 253 VYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNF 331 (737)
Q Consensus 253 ~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~-D~~~~~~vg~VQtPq~f~n~ 331 (737)
.++. ++ +.++++|+|.|++. ++||||+++|+|.++. |+.|.+++..|. +|+ +++|.+...+.+.
T Consensus 433 ~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~~~ 497 (625)
T 2z86_A 433 RFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDLS----LACVYTTNRNIDR 497 (625)
T ss_dssp EEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCTT----CSEEEEEEEEECT
T ss_pred EEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCcccC-hhHHHHHHHHHHhCCC----eeEEEeeeEEECC
Confidence 6664 33 46899999999999 8999999999999875 999999998884 565 7888776555443
Q ss_pred CcCChHHHHHHHhhhhHHhHhhhcCCcccccccceeehhhccCCccccccchHhhHhhhcCchhHHHhhhhhccccccCC
Q 004688 332 NEHDIYDGSLRSGYRLQWPGMDGLKGPFLTGTGHYIRRESLYGNFKHKGIDLAELKDTFGESNLFIKSLHQSYEHKNVNG 411 (737)
Q Consensus 332 ~~~d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~AL~~~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 411 (737)
+.. .... .+.......+......++|++.++||+++.
T Consensus 498 ~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------------------------------------- 534 (625)
T 2z86_A 498 EGN-LISN----GYNWPIYSREKLTSAMICHHFRMFTARAWN-------------------------------------- 534 (625)
T ss_dssp TSC-EEEE----CCCCSSCCHHHHTTSCCCCSCEEEEHHHHT--------------------------------------
T ss_pred CCC-Eecc----CcccccCCHHHHhhcccCCceEEEEHHHHH--------------------------------------
Confidence 211 0000 000000011122344567888899999882
Q ss_pred ccchhhHHHhhhhhccccccccccccccccccCC-CccchHHHHHHHHHCCCEEEEeCCCCCeeE---eccCCCHHHHHH
Q 004688 412 ENLSNVLQQETEVLASCSYEHQTKWGEEVGFSYQ-SVSEDFFTGFILHCKGWTSTYLDPSRPQFL---GTSTTNLNDVLI 487 (737)
Q Consensus 412 ~~~~~~~~~~~~~v~~c~ye~~~~wg~~~G~~~~-sltED~~t~~~l~~~Gwrs~y~~~~~~~~~---g~aP~tl~~~~~ 487 (737)
+.|||+.. ...||.+..+|+.++| +..|+++ +... .....+......
T Consensus 535 --------------------------~~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~~--~~~~~r~h~~~~s~~~~~~ 585 (625)
T 2z86_A 535 --------------------------LTEGFNESISNAVDYDMYLKLSEVG-PFKHINK--ICYNRVLHGENTSIKKLDI 585 (625)
T ss_dssp --------------------------TTTCCCSSCSSCHHHHHHHHHTTTS-CEEEEEE--EEEEEECC----CCSSHHH
T ss_pred --------------------------HhCCCCCccCChHHHHHHHHHHHhC-CEEEeCC--cEEEEEECCCccchhhHHH
Confidence 24677764 3679999999999999 8899885 3332 234455566677
Q ss_pred HhHHHhcchhhhH
Q 004688 488 QGTRWASGLIDVS 500 (737)
Q Consensus 488 Qr~RWa~G~~qi~ 500 (737)
|+.+|.+...+.+
T Consensus 586 ~~~~~~~~~~~~l 598 (625)
T 2z86_A 586 QKENHFKVVNESL 598 (625)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777766554444
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.61 E-value=2.9e-15 Score=161.24 Aligned_cols=122 Identities=16% Similarity=-0.002 Sum_probs=91.9
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCc
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICP 172 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p 172 (737)
.-|.|+|+||+ |||+ +.+.+||.++++++||. ..+|+|+|||++|.|.+.+.+. +.
T Consensus 46 ~~~~vSViIp~---yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~~--------------~~----- 101 (329)
T 3ckj_A 46 AGRTISVVLPA---LDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVAA--------------GA----- 101 (329)
T ss_dssp TTCCEEEEEEE---SSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHHT--------------TC-----
T ss_pred cCCcEEEEEee---CCCH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHHh--------------hh-----
Confidence 45899999999 9998 68999999999999994 4799999999999886433211 00
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcE
Q 004688 173 QAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLL 252 (737)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l 252 (737)
+ + .+++
T Consensus 102 -------------------------------------------------------~-~------------------~~~~ 107 (329)
T 3ckj_A 102 -------------------------------------------------------R-V------------------VSRE 107 (329)
T ss_dssp -------------------------------------------------------E-E------------------EEHH
T ss_pred -------------------------------------------------------h-h------------------ccce
Confidence 0 0 0001
Q ss_pred EEEe-ccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhh-cCCCCCCceEEEccCc
Q 004688 253 VYVS-REKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFH-LDPKTSSSLAFVQFPQ 326 (737)
Q Consensus 253 ~yi~-R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f-~D~~~~~~vg~VQtPq 326 (737)
.++. .++ +.||++|+|.|++. ++||+|+++|+|.+ +. |++|.+++..+ .+|+ +++|++..
T Consensus 108 ~~~~~~~~-----n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~~----~~~v~g~~ 170 (329)
T 3ckj_A 108 QALPEVPI-----RPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGDG----VHLVKSFY 170 (329)
T ss_dssp HHCTTSCC-----CCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCSS----CCEEEEEE
T ss_pred eeeccCCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCCCcC-hHHHHHHHHHHHhCCC----ccEEEEEe
Confidence 1121 122 57899999999999 89999999999998 54 99999999875 5565 77776643
No 10
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.48 E-value=2.5e-15 Score=178.38 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCCccc
Q 004688 95 PAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTICPQA 174 (737)
Q Consensus 95 P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~p~~ 174 (737)
|.|+|+||| ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.++
T Consensus 2 p~vSVIIp~---yN~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~~~--------------------- 54 (729)
T 3l7i_A 2 NKLTIIVTY---YNAE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEAIK--------------------- 54 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEc---CCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCCcHHHHHHHHHH---------------------
Confidence 789999999 9998 79999999999999994 89999999999977643322110
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCcEEE
Q 004688 175 YFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPLLVY 254 (737)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~l~y 254 (737)
.|+ +++.+
T Consensus 55 -------------------------~~~-----------------------------------------------~~i~~ 62 (729)
T 3l7i_A 55 -------------------------DYD-----------------------------------------------KNIRF 62 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------hCC-----------------------------------------------CCEEE
Confidence 000 13456
Q ss_pred EeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcCC
Q 004688 255 VSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDP 313 (737)
Q Consensus 255 i~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~ 313 (737)
+..++ +.|+++|.|.|++. ++||+|+++|+|.++. |++|.+++..+.++
T Consensus 63 i~~~~-----n~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 63 IDLDE-----NSGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNT 111 (729)
T ss_dssp -----------------------------------------------------------
T ss_pred EECCC-----CCCHHHHHHHHHHh----ccCCEEEEECCCCCCC-hhHHHHHHHHhcCC
Confidence 65544 46899999999999 8999999999999975 99999999988743
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.47 E-value=9.9e-14 Score=162.60 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=89.4
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCce-EEEEEcCCCCccch-HhHHHHHHhhhhhhhhhhhcccccC
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKL-HVYLSDDGGSPITL-RGMREAFRFAKWWIPFCRRYRIKTI 170 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl-~v~V~DDg~~~~T~-~~l~ea~~~a~~w~pfc~~~~v~~r 170 (737)
.-|.|+|+||| ||++ +.+.+||.|+++++|+.++. +|+|+|||++|.+- ..+.|..
T Consensus 178 ~~pkVSVVIpt---YN~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~------------------ 235 (657)
T 4fix_A 178 GTANIAVGIPT---FNRP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAA------------------ 235 (657)
T ss_dssp SCCCEEEECCB---SSCH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHH------------------
T ss_pred CCCeEEEEEEe---cCCH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHH------------------
Confidence 34899999999 9998 69999999999999965544 89999999987321 1111110
Q ss_pred CccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccC
Q 004688 171 CPQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMP 250 (737)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P 250 (737)
++ ..|
T Consensus 236 -------------------------------~~--------------------------------------------~~~ 240 (657)
T 4fix_A 236 -------------------------------AR--------------------------------------------LGS 240 (657)
T ss_dssp -------------------------------HH--------------------------------------------HGG
T ss_pred -------------------------------Hh--------------------------------------------cCC
Confidence 00 013
Q ss_pred cEEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC-CCCCCceEEEc
Q 004688 251 LLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD-PKTSSSLAFVQ 323 (737)
Q Consensus 251 ~l~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D-~~~~~~vg~VQ 323 (737)
++.++..+ +.|.|++.|.|++.+....++|+|+++|+|.+++ |++|.+++.++.+ ++ ++.|+
T Consensus 241 ~I~vI~~~------N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~-pd~L~~ll~~l~~~~~----~~~vg 303 (657)
T 4fix_A 241 RLSIHDQP------NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLE-PDSILRVLAMHRFAKA----PMLVG 303 (657)
T ss_dssp GEEEEECC------CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEEC-THHHHHHHHHHHHBSS----CCEEE
T ss_pred CEEEEECC------CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccC-hhHHHHHHHHHHhCCC----cEEEE
Confidence 46777543 3689999999999831112679999999999975 9999999998863 33 55554
No 12
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.39 E-value=2.1e-12 Score=142.32 Aligned_cols=120 Identities=18% Similarity=0.085 Sum_probs=88.4
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHc--CCCCCCceEEEEEcCCCCccchHhHHHHHHhhhhhhhhhhhcccccCC
Q 004688 94 LPAIDVFICTADPEKEPTFGVMNTVLSAMA--LDYPVDKLHVYLSDDGGSPITLRGMREAFRFAKWWIPFCRRYRIKTIC 171 (737)
Q Consensus 94 ~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~--~dYP~~kl~v~V~DDg~~~~T~~~l~ea~~~a~~w~pfc~~~~v~~r~ 171 (737)
.|.|+|+||| |||+ +.+.++|.++.+ .+||.+ .+|+|+||||+|.|.+.+.+.. .
T Consensus 93 ~p~vSVVIP~---yNe~-~~l~~~l~sl~~~l~~~~~~-~EIIVVDDgStD~T~~i~~~~~--------------~---- 149 (387)
T 3f1y_A 93 GLTVSAVLPS---RNVA-DTVGGIIDEIHALNERAPLI-DQILVVDADSEDGTAGVAASHG--------------A---- 149 (387)
T ss_dssp TCCEEEEEEE---SSCT-TTHHHHHHHHHHHHHHSCCC-SEEEEEECSCSSSHHHHHHHTT--------------C----
T ss_pred CCeEEEEEEc---CCCH-HHHHHHHHHHHHHHhcCCCC-eEEEEEcCcCCccHHHHHHHhC--------------c----
Confidence 5899999999 9998 789999999987 477754 7999999999998865332210 0
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcceeeeeecCCCCCchhhhhccccccCc
Q 004688 172 PQAYFSEAESDENFGDSEFVTEKRKIKEKYEMFEEQVMKAVEDGEYGNSRNHSTIIEQIIQDTSGENETIRQADLVEMPL 251 (737)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~P~ 251 (737)
+ ++. +.
T Consensus 150 --------------------------------------------------------~-v~~-----------------~~ 155 (387)
T 3f1y_A 150 --------------------------------------------------------E-VYS-----------------EN 155 (387)
T ss_dssp --------------------------------------------------------E-EEE-----------------GG
T ss_pred --------------------------------------------------------h-hcc-----------------cc
Confidence 0 000 00
Q ss_pred EEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhhc-CCCCCCceEEEcc
Q 004688 252 LVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL-DPKTSSSLAFVQF 324 (737)
Q Consensus 252 l~yi~R~k~p~~~~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f~-D~~~~~~vg~VQt 324 (737)
+.++.+++ +.+|++|+|.|++. ++||+|+++|||.. ++ |+.|.+++..+. +|+ +++|.+
T Consensus 156 ~~~i~~~~-----n~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~-p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 156 ELMSGYGD-----AHGKGDAMWRALSV----TRGDLVLYIDADTRDFR-PQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp GTTGGGCS-----CCSHHHHHHHHTTT----CCSSEEEECCTTCSSCC-THHHHTTHHHHHHSTT----CCEEEE
T ss_pred eeEecCCc-----cCCHHHHHHHHHHh----cCCCEEEEEcCCCCcCC-HHHHHHHHHHHHHCCC----ceEEEE
Confidence 01122222 56899999999998 89999999999998 55 999999998874 555 566654
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.38 E-value=8.2e-13 Score=139.88 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=45.4
Q ss_pred cccccCCCc---cchHHHHHHHHHCCCEEEEeCCCCCee----------EeccCCCHHHHHHHhHHHhcchhhhH
Q 004688 439 EVGFSYQSV---SEDFFTGFILHCKGWTSTYLDPSRPQF----------LGTSTTNLNDVLIQGTRWASGLIDVS 500 (737)
Q Consensus 439 ~~G~~~~sl---tED~~t~~~l~~~Gwrs~y~~~~~~~~----------~g~aP~tl~~~~~Qr~RWa~G~~qi~ 500 (737)
.+||+.... .||.+.+.|++.+||++.+.++..... ....|+.+....+||.||+.+.+..+
T Consensus 189 vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 189 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp TTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 467876543 599999999999999877433211111 23578999999999999999999876
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=99.11 E-value=3.3e-10 Score=116.89 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC-----CCCCCceEEE
Q 004688 268 KGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD-----PKTSSSLAFV 322 (737)
Q Consensus 268 KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D-----~~~~~~vg~V 322 (737)
.|+|+|.|++. ++|||++++|+|.+++ |++|.+++.++.+ |+ +|.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~~-~~~l~~l~~~~~~~~~~~~~----vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVELV-DRGYDDLVAAIEALEEADPK----WLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEECS-SCCHHHHHHHHHHHHHHCTT----EEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhcccCCCC----eeEE
Confidence 46789999999 8999999999999975 9999999998863 65 7776
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=98.69 E-value=1.9e-07 Score=103.01 Aligned_cols=42 Identities=21% Similarity=0.092 Sum_probs=36.5
Q ss_pred CCChHHHHHHHH----HhcCCCCCCCEEEEeCCCCC-CCchHHHHHHHHhhc
Q 004688 265 HHFKGGALNVLL----RVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL 311 (737)
Q Consensus 265 ~~~KAGaLN~al----~~s~~~s~ge~Il~lDAD~~-~~~p~~L~~~v~~f~ 311 (737)
+.||++|+|.|+ +. ++||+|+++|||.. .+ |+.+.+++....
T Consensus 73 n~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~-P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEE----TQWERIHFYDADITSFG-PDWITKAEEAAD 119 (397)
T ss_dssp SSSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 469999999999 77 89999999999986 34 999999887664
No 16
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=98.01 E-value=1.9e-05 Score=86.35 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhcCCCC---CCCEEEEeCCCCCCCchHHHHHHHH
Q 004688 266 HFKGGALNVLLRVSGVIS---NSPYILGLDCDMYCNDPTSARQAMC 308 (737)
Q Consensus 266 ~~KAGaLN~al~~s~~~s---~ge~Il~lDAD~~~~~p~~L~~~v~ 308 (737)
.||..||-.|+.. + +||+|+++|||-+ .|..+.+.+.
T Consensus 143 ~GKG~Am~aGl~~----A~~~~gd~Vv~~DaDl~--iP~~v~~~~k 182 (394)
T 2zu9_A 143 SGKGEGMLVGLLL----AKAIGAEYVGFVDADNY--IPGAVNEYVK 182 (394)
T ss_dssp CSHHHHHHHHHHH----HHHTTCSEEEECCSCBS--CHHHHHHHHH
T ss_pred CChHHHHHHHHHH----HhhCCCCEEEEEeCCCC--CHHHHHHHHH
Confidence 4999999999998 6 8999999999995 3888866554
No 17
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=97.88 E-value=8.9e-05 Score=79.44 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=37.1
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccch
Q 004688 93 KLPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITL 145 (737)
Q Consensus 93 ~~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T~ 145 (737)
....++|+||+ |||+. .++.+++++.+.. .+|+|+|||+.|.|.
T Consensus 51 i~~klSIVVPv---YNEe~----~lLesVl~qi~~d--~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPT---RNERL----KLLEGVLSGIPHE--ALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEE---SSCCH----HHHHHHHHTSCTT--SEEEEEECCCHHHHH
T ss_pred HHhceEEEEec---cCcHH----HHHHHHHhcCCCC--ceEEEEECCCCCChH
Confidence 46789999999 99994 4689999998653 899999999988763
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=97.67 E-value=9.4e-05 Score=79.87 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=40.0
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCccc
Q 004688 94 LPAIDVFICTADPEKEPTFGVMNTVLSAMALDYPVDKLHVYLSDDGGSPIT 144 (737)
Q Consensus 94 ~P~VdV~Vpt~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~V~DDg~~~~T 144 (737)
++.+.|+|+| ||-| + +++++.++++++.+.++..|+|+|||+.+.|
T Consensus 1 ~~~~pViI~~---yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~ 46 (343)
T 1fo8_A 1 LAVIPILVIA---CDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEET 46 (343)
T ss_dssp CCCCCEEEEE---SSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHH
T ss_pred CCcccEEEEE---CCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHH
Confidence 3568899999 9998 7 9999999999997777788999999998744
No 19
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=70.29 E-value=21 Score=36.97 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHCCCEEEEeCCC---C-CeeE---------eccCCCHHHHHHHhHHHhcchhhhH
Q 004688 448 SEDFFTGFILHCKGWTSTYLDPS---R-PQFL---------GTSTTNLNDVLIQGTRWASGLIDVS 500 (737)
Q Consensus 448 tED~~t~~~l~~~Gwrs~y~~~~---~-~~~~---------g~aP~tl~~~~~Qr~RWa~G~~qi~ 500 (737)
.||.+...|+...|.++.-.... + ..+. ...|......-.+++||..+.+..+
T Consensus 185 gEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~dGLnsl 250 (287)
T 3lw6_A 185 LEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNV 250 (287)
T ss_dssp SHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSSCSGGGC
T ss_pred ccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcccchhhhhhhhcEEccCCCCeee
Confidence 59999999999999987543210 0 1121 1234456666788999999888766
No 20
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=48.17 E-value=40 Score=33.45 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004688 268 KGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (737)
Q Consensus 268 KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (737)
....+-+|++......+.++|+++|||+=.-+++.+++++..+.+
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 456777888763210125899999999854568999999887764
No 21
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=26.02 E-value=1.4e+02 Score=28.30 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCchHHHHHHHHhh
Q 004688 266 HFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFH 310 (737)
Q Consensus 266 ~~KAGaLN~al~~s~~~s~ge~Il~lDAD~~~~~p~~L~~~v~~f 310 (737)
.+-++++..|++.. .+.+.+++++||+-.-+++.+++++..+
T Consensus 71 ~G~~~si~~al~~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 112 (197)
T 3d5n_A 71 EGISTSLKLGLRFF---KDYDAVLVALGDMPFVTKEDVNKIINTF 112 (197)
T ss_dssp GCHHHHHHHHHHHT---TTSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhh---ccCCcEEEEeCCccccCHHHHHHHHHHh
Confidence 35688899999872 2348999999999323488998888766
No 22
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=24.46 E-value=62 Score=31.97 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHhcCC---CCCCCEEEEeCCCCCCCchHHHHHHHHhhcC
Q 004688 267 FKGGALNVLLRVSGV---ISNSPYILGLDCDMYCNDPTSARQAMCFHLD 312 (737)
Q Consensus 267 ~KAGaLN~al~~s~~---~s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D 312 (737)
...+++-+|++.... ..+.++|+++|||+-.-.++.+++++..+.+
T Consensus 84 ~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~ 132 (246)
T 3f1c_A 84 DRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALE 132 (246)
T ss_dssp SHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHh
Confidence 457788778876310 0136899999999843458899999887764
No 23
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=21.93 E-value=93 Score=31.80 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCCCEEEEeCCCCCCCchHHHHHHHHhhcCCC
Q 004688 283 SNSPYILGLDCDMYCNDPTSARQAMCFHLDPK 314 (737)
Q Consensus 283 s~ge~Il~lDAD~~~~~p~~L~~~v~~f~D~~ 314 (737)
.+.++++..|.|++++ .+-|.+.+..+ |++
T Consensus 92 ~~~~Wf~~~DDDtyv~-~~nL~~~L~~~-d~~ 121 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVN-PKALLQLLKTF-PQD 121 (280)
T ss_dssp HTCSEEEEEETTEEEC-HHHHHHHHTTS-CTT
T ss_pred CCCcEEEEeCCCcEEc-HHHHHHHHHhC-CCC
Confidence 5889999999999986 88888877655 554
No 24
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=21.20 E-value=1.1e+02 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCchHHHHHHHHhhcC
Q 004688 265 HHFKGGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCFHLD 312 (737)
Q Consensus 265 ~~~KAGaLN~al~~s~~~s~ge~Il~lDAD~-~~~~p~~L~~~v~~f~D 312 (737)
..+.++.++ +++. .+.|.+++++||+ .++ ++.+++++..+.+
T Consensus 71 ~~g~~~~~~-~~~~----~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~~ 113 (234)
T 2y6p_A 71 PSGSDRVLY-VVRD----LDVDLIINYQGDEPFVY-EEDIKLIFRELEK 113 (234)
T ss_dssp CSHHHHHHH-HHTT----CCCSEEEECCTTCCCCC-HHHHHHHHHHHHH
T ss_pred ccchHHHHH-HHHh----CCCCEEEEecCCcCcCC-HHHHHHHHHHHHh
Confidence 356777774 5665 4678999999999 654 8889998887753
Done!