BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004690
(736 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/724 (38%), Positives = 394/724 (54%), Gaps = 63/724 (8%)
Query: 51 SPPVAKKVEHKMELFGDV---------------RVDNYYWLRDDSRSDPEVLAYLKQEND 95
PP+A K H++ L G V R D Y+W+RDD R DP V+ +L +E
Sbjct: 32 QPPIAAKKPHRVTL-GYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKV 90
Query: 96 YFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHN 155
YF++ + ++ D+++AE I ++D+SAP+ G Y YYTR ++GK Y +CR
Sbjct: 91 YFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCR----- 145
Query: 156 NEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGD 214
V E G D E +I+D N AEG+ F V + P++ LVA++ D G+
Sbjct: 146 ------VFTDKEPG-DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGN 198
Query: 215 EIYTVYVIDI-ETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272
E+YT+ I + + + G + W + +L Y+T DE LR +K W H + Q
Sbjct: 199 EVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258
Query: 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTPRV 329
S D+CLY E + ++S + + L I S+S T V LD+ K L ++ PR
Sbjct: 259 SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318
Query: 330 VGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFI 387
GV H +H I N +LL P S+ + VL+ H E V ++ I +
Sbjct: 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS 378
Query: 388 DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV---FSSRIL 444
++L V R GL +I T + K+ G + V +P++++ ES +
Sbjct: 379 NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTF 438
Query: 445 RFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 504
R YSSL TP + +D K+ V GGFD NY ER++A+A D T+IP+ +V
Sbjct: 439 RMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSVV 498
Query: 505 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564
Y K+L + P +LYGYGSY + DP F+ L DRG IFAIA IRGG ELGR WY
Sbjct: 499 YHKDL-DMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWY 557
Query: 565 ENG-KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
E G K+L K+NTF+DFIA AE+L+ T +L EGRSAGGLL+GAVLNMRPDLFK A
Sbjct: 558 EIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVA 617
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWE----------------------VKAQNYPHILVT 661
+A VPFVDV+TTM DP+IPLTT EWE V+AQ YP+I+V
Sbjct: 618 LAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQ 677
Query: 662 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 721
GL+DPRV Y EPAK+V+KLRE KTD+N +L ++ +GHFS R++ +E+A F+
Sbjct: 678 CGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFV 737
Query: 722 MRAL 725
+ L
Sbjct: 738 CKHL 741
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 195/729 (26%), Positives = 322/729 (44%), Gaps = 119/729 (16%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APF G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFWWGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + ++++D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLY------HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330
++ H + +G +E ++FL I++ + + Y+ E +LT V
Sbjct: 224 LVFGAIPAQHHR----YVGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQ 277
Query: 331 G-VDTAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRE---SVKLQ 381
G +D S ++G+ ++ D N L+ N LIP R+ +V
Sbjct: 278 GDLDADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQVLTVHSG 336
Query: 382 DIQLFIDHLA-------VYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDP 434
LF +++ ++ EG +++ LP +G + G Y DP
Sbjct: 337 SGYLFAEYMVDATARVEQFDYEG--KRVREVALPGLGS-VSGFNG----------YWWDP 383
Query: 435 SESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASAS 494
+ L F + + PP++Y ++ G L + F +Y +E+++ +
Sbjct: 384 A--------LYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSK 433
Query: 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIR 554
DGT++P+ I YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +R
Sbjct: 434 DGTRVPLIISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLR 492
Query: 555 GGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 614
GGGE G+ W+ G K+N F DFIA AEYL Y ++L I G S GGLL+GAV+
Sbjct: 493 GGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMT 552
Query: 615 MRPDLFKAAVAAVPFVDVL---------------------TTMLDPTIPLTTAEWEVKAQ 653
RPDL + A+ AV +D+L M D +
Sbjct: 553 QRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGV 612
Query: 654 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 713
+YP +VT +D RV+ + KF A L+ + L + E AGH + + + + +
Sbjct: 613 SYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQ 672
Query: 714 AAFTYTFLM 722
+A Y F +
Sbjct: 673 SADIYAFTL 681
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 194/721 (26%), Positives = 316/721 (43%), Gaps = 103/721 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + ++++D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLY------HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330
++ H + +G +E +FL I++ + + Y+ E +LT V
Sbjct: 224 LVFGAIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQ 277
Query: 331 G-VDTAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQ 384
G +D S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 278 GDLDADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV------ 330
Query: 385 LFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSR 442
L V+ G L Y + A + GK V + + S+
Sbjct: 331 -----LTVHSGSGYL--FAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383
Query: 443 ILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
L F + + PP++Y ++ G L + F +Y +E+++ + DGT++P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562
I YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+
Sbjct: 442 ISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQA 500
Query: 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 622
W+ G K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL +
Sbjct: 501 WHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRV 560
Query: 623 AVAAVPFVDVL---------------------TTMLDPTIPLTTAEWEVKAQNYPHILVT 661
A+ AV +D+L M D + +YP +VT
Sbjct: 561 ALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVT 620
Query: 662 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 721
++ RV+ + KF A L+ + L + E AGH + + + + ++A Y F
Sbjct: 621 TADHNDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFT 680
Query: 722 M 722
+
Sbjct: 681 L 681
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 198/721 (27%), Positives = 316/721 (43%), Gaps = 103/721 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + +++ D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLY------HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330
++ H + +G +E +FL I++ + + Y+ E +LT V
Sbjct: 224 LVFGAIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQ 277
Query: 331 G-VDTAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQ 384
G +D S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 278 GDLDADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV------ 330
Query: 385 LFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSR 442
L V+ G L Y + A + GK V + + S+
Sbjct: 331 -----LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383
Query: 443 ILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
L F + + PP++Y ++ G L + F +Y +E+++ + DGT++P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562
I YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+
Sbjct: 442 ISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQA 500
Query: 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 622
W+ G K+N F DFIA AEYL Y ++L I G S GGLL+GAV RPDL +
Sbjct: 501 WHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRV 560
Query: 623 AVAAVPFVDVLT--TMLDPTIPL----TTAEWEVK---------------AQNYPHILVT 661
A+ AV +D L T T T+A+ E +YP VT
Sbjct: 561 ALPAVGVLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVT 620
Query: 662 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 721
+D RV+ + KF A L+ + L + E AGH + + + + ++A Y F
Sbjct: 621 TADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFT 680
Query: 722 M 722
+
Sbjct: 681 L 681
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 198/721 (27%), Positives = 316/721 (43%), Gaps = 103/721 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + +++ D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLY------HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330
++ H + +G +E +FL I++ + + Y+ E +LT V
Sbjct: 224 LVFGAIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQ 277
Query: 331 G-VDTAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQ 384
G +D S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 278 GDLDADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV------ 330
Query: 385 LFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSR 442
L V+ G L Y + A + GK V + + S+
Sbjct: 331 -----LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383
Query: 443 ILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
L F + + PP++Y ++ G L + F +Y +E+++ + DGT++P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562
I YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+
Sbjct: 442 ISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQA 500
Query: 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 622
W+ G K+N F DFIA AEYL Y ++L I G S GGLL+GAV RPDL +
Sbjct: 501 WHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRV 560
Query: 623 AVAAVPFVDVLT--TMLDPTIPL----TTAEWEVK---------------AQNYPHILVT 661
A+ AV +D L T T T+A+ E +YP VT
Sbjct: 561 ALPAVGVLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVT 620
Query: 662 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 721
+D RV+ + KF A L+ + L + E AGH + + + + ++A Y F
Sbjct: 621 TADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFT 680
Query: 722 M 722
+
Sbjct: 681 L 681
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 196/729 (26%), Positives = 310/729 (42%), Gaps = 92/729 (12%)
Query: 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIE 108
LP P + +V + FG+ D + WL D R+D +V A+++ ++ Y + + K++
Sbjct: 37 LPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYL---KQLP 93
Query: 109 DNMFAE--LKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTM 166
+ E +K I E P R+G+ +Y+ + + L+ +AP
Sbjct: 94 ERAALEKRMKALIDYERFGLPQRRGASVFYSWN---SGLMNQSQLLVRPADAPVGTKG-- 148
Query: 167 ETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
++LD N A+ G ++ + S D +L+AY+ G + TV + +
Sbjct: 149 ---------RVLLDPNTWAK-DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD 198
Query: 227 GTPVGKPLVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSNDI 276
G P+ L V S + W GN+AL+Y E + WLH+L QS D
Sbjct: 199 GKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258
Query: 277 CLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA 335
++ + G S +++ I S S+ T V + V++ +T +G TA
Sbjct: 259 PVFATPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVAR------VTNGKIGPVTA 311
Query: 336 --ASHRGNHFFITRRSDELFNSELLACPV---------DNTSETTVLIPHR----ESVKL 380
+ F+ D+L+ P+ +T ++P ESV +
Sbjct: 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371
Query: 381 QDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFS 440
+LF ++ ++ + L SL G S + S P +
Sbjct: 372 AGNRLFASYI-----HDAKSQVLAFDLDGKPAGAVSLPGIGSASGL----SGRPGD---- 418
Query: 441 SRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIP 500
R +SS P +V +D + E V FD ++ E+ + + DGT++P
Sbjct: 419 -RHAYLSFSSFTQPATVLA--LDPATAKTTPWEPVHLTFDPADFRVEQVFYPSKDGTKVP 475
Query: 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560
+ IV RK+ G P LLYGYG + + P F++ ++ +D G FA+A +RGGGE G
Sbjct: 476 MFIVRRKDA---KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYG 532
Query: 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF 620
W++ G+ KK+N F DFIA E+LI N + L IEG S GGLLIGAV N RPDLF
Sbjct: 533 DAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLF 592
Query: 621 KAAVAAVPFVDVLT---------TMLDPTIPLTTAEWEV-----------KAQNYPHILV 660
AA AV +D+L + D P A+W V +YP ILV
Sbjct: 593 AAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGVDYPAILV 652
Query: 661 TAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 720
T D RV+ K+ A L+ L + E AGH S +++ E A F
Sbjct: 653 TTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAF 712
Query: 721 LMRALSMLP 729
L + P
Sbjct: 713 LAHFTGLTP 721
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 186/719 (25%), Positives = 324/719 (45%), Gaps = 80/719 (11%)
Query: 55 AKKVEHKMELFGDVRV-DNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFA 113
A + E ++ V+V D Y WL D+ PEV ++ +N + A++ E + A
Sbjct: 5 ATRAEQVVDTLHGVQVADPYRWLEDEKA--PEVQTWMTAQNAHAREALAKFPGRE-ALAA 61
Query: 114 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAP 173
K + VS P R+ ++Y RT + KE + +++ + E+G
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKE-----KAILYWRQG--------ESGQ--- 105
Query: 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP 233
E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 106 -EKVLLDPNGWSK-DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD 163
Query: 234 LV--GVTASVEWAGNEALVY---------ITMDEILRPDKAWL--HKLEADQSNDICLYH 280
++ G A+ +W + Y I +DE RP + H L + S D + H
Sbjct: 164 VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE--RPGYTTIRYHTLGTEPSKDTVV-H 220
Query: 281 EKDDIYSLGLQASESK--KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASH 338
E+ + LQ+ S+ K+LF+ + Y ++ R+L + VG
Sbjct: 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-KGVGAKYEVHA 279
Query: 339 RGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREG 397
+ F++ P + ++P S L + + HL++ +
Sbjct: 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339
Query: 398 GLQKITTYRLPAVGEPLKSLQ--GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP 455
++ L G+P++++Q G + + + +D + VF+S TP
Sbjct: 340 ATSEVRVATLK--GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS---------FTTPR 388
Query: 456 SVYDYDMDMGISVL-KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDG 514
+Y + G S L K++ + + Y E+ + ++ DGT++P+ +V+RK+L K DG
Sbjct: 389 QIYKTSVSTGKSELWAKVDVPM---NPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDG 444
Query: 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 574
+ P LLYGYG + + + F SS L LD G ++A+A +RGGGE G+ W++ G+ KK+N
Sbjct: 445 NAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQN 504
Query: 575 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634
F DF A AEYL++ Y ++L I G S GGLL+GA + RP+L+ A V AVP +D++
Sbjct: 505 VFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVR 564
Query: 635 TMLDPTIPLTTAEWEVKAQ--------------------NYPHILVTAGLNDPRVMYSEP 674
L + E+ + YP +L+ A +D RV
Sbjct: 565 YHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHA 624
Query: 675 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 733
KFVA ++ + L + E AGH + + + Y+FL + L + + G
Sbjct: 625 RKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQGG 683
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 158/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 395 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 452
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G I A+A IRGGGE G
Sbjct: 453 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGE 511
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ A N RPDLF
Sbjct: 512 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFG 571
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW VK YP
Sbjct: 572 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPS 631
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 632 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 691
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 692 VSDMFAFIARCLNV 705
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 156/314 (49%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTCKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 157/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G + GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 157/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYG+G + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 157/314 (50%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ ++ RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 156/312 (50%), Gaps = 35/312 (11%)
Query: 448 YSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 504
++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+ IV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMFIV 455
Query: 505 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQW 563
++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G W
Sbjct: 456 HKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETW 514
Query: 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 515 HKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 624 VAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPHIL 659
+A V +D+L TT + EW +K YP +L
Sbjct: 575 IAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSML 634
Query: 660 VTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLREAA 715
+ +D RV+ KF+A L+ + + +N LL + AGH + + + E +
Sbjct: 635 LLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGMPTAKVIEEVS 694
Query: 716 FTYTFLMRALSM 727
+ F+ R L++
Sbjct: 695 DMFAFIARCLNI 706
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 156/314 (49%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L T + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 156/314 (49%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ + RV+ KF+A L+ + + +N LL + AGH + + + E
Sbjct: 633 MLLLTADHADRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 156/314 (49%), Gaps = 35/314 (11%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVL-----------TTMLDPTIPLTTAEWEVKAQ-------------NYPH 657
+A V +D+L TT + EW +K YP
Sbjct: 573 CVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPS 632
Query: 658 ILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLRE 713
+L+ +D RV+ KF+A L+ + + +N LL + AG + + + E
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAKVIEE 692
Query: 714 AAFTYTFLMRALSM 727
+ + F+ R L++
Sbjct: 693 VSDMFAFIARCLNI 706
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 141/295 (47%), Gaps = 27/295 (9%)
Query: 454 PPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLD 513
PP++Y + + LK I L FD+ NY E+K A++ DG +IP +VY+K +K D
Sbjct: 420 PPTIY---LWVKTHELKIIRKALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKG-IKFD 475
Query: 514 GSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572
G +P LL YG +++ N P F+ + + + + +A IRGGGE G +W+++ + +K+
Sbjct: 476 GKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKR 535
Query: 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 632
+ F DF A +E LIK + E L I+G S GGLL+ + RP+LF A VP +D+
Sbjct: 536 QTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDM 595
Query: 633 L------------TTMLDPTIPLTTAEWEVKA--------QNYPHILVTAGLNDPRVMYS 672
+ T DP IP + A Q YP +L+T + D RV
Sbjct: 596 IRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPW 655
Query: 673 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 727
F L + L + +GH S S E YTF AL +
Sbjct: 656 HGRIFEYVLAQNPNTKTYFLESKD--SGHGSGSDLKESANYFINLYTFFANALKL 708
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 317 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 373
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 374 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 431
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 432 LCALTMKPGLFKAGVAGASVVD 453
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD 473
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G + GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYAYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD 473
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L+ G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVAG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVD 631
L M+P LFKA VA VD
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD 473
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 171 DAPPEHLILDENVKAEGRGFYSVGCF-QVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
D E+ I+ EN+K R F ++SPD K +A+ + ++ ++V D+ET
Sbjct: 38 DNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,284,712
Number of Sequences: 62578
Number of extensions: 969102
Number of successful extensions: 2250
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 40
length of query: 736
length of database: 14,973,337
effective HSP length: 106
effective length of query: 630
effective length of database: 8,340,069
effective search space: 5254243470
effective search space used: 5254243470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)