Query 004698
Match_columns 736
No_of_seqs 345 out of 1302
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 2E-65 4.3E-70 537.2 16.8 259 51-314 1-260 (260)
2 KOG2037 Guanylate-binding prot 100.0 1.3E-46 2.8E-51 419.8 25.4 468 42-555 5-491 (552)
3 cd01851 GBP Guanylate-binding 100.0 5.6E-45 1.2E-49 374.5 19.8 219 66-307 2-223 (224)
4 PF02841 GBP_C: Guanylate-bind 100.0 1E-35 2.2E-40 318.3 35.3 243 315-560 1-253 (297)
5 KOG2037 Guanylate-binding prot 100.0 2.9E-30 6.3E-35 288.8 24.8 382 38-432 29-446 (552)
6 PF05879 RHD3: Root hair defec 100.0 9.7E-27 2.1E-31 274.9 38.6 356 77-477 1-387 (742)
7 KOG2203 GTP-binding protein [G 100.0 1.2E-24 2.7E-29 235.8 41.1 306 39-400 3-343 (772)
8 KOG0994 Extracellular matrix g 99.3 2.6E-08 5.6E-13 116.4 40.6 258 440-700 1472-1750(1758)
9 PF00038 Filament: Intermediat 99.0 7.5E-06 1.6E-10 88.7 40.0 206 503-720 60-290 (312)
10 KOG4181 Uncharacterized conser 98.9 2.9E-08 6.3E-13 104.5 13.7 49 41-94 163-211 (491)
11 TIGR02168 SMC_prok_B chromosom 98.4 0.0046 1E-07 78.4 44.8 23 73-95 25-50 (1179)
12 TIGR02169 SMC_prok_A chromosom 98.4 0.0068 1.5E-07 77.0 45.2 21 72-92 24-44 (1164)
13 PF00038 Filament: Intermediat 98.3 0.0015 3.2E-08 70.9 32.8 217 505-727 48-283 (312)
14 COG1159 Era GTPase [General fu 98.3 1.2E-06 2.5E-11 92.1 6.4 58 69-139 4-65 (298)
15 TIGR00606 rad50 rad50. This fa 98.3 0.0097 2.1E-07 76.6 42.4 21 72-92 29-49 (1311)
16 PHA02562 46 endonuclease subun 98.3 0.0018 4E-08 75.8 33.3 21 72-92 28-48 (562)
17 KOG0994 Extracellular matrix g 98.2 0.015 3.2E-07 69.9 39.3 111 600-718 1609-1729(1758)
18 KOG0977 Nuclear envelope prote 98.2 0.00031 6.6E-09 79.9 24.9 179 518-697 148-365 (546)
19 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 6.1E-06 1.3E-10 83.2 9.8 62 74-143 3-64 (196)
20 TIGR02168 SMC_prok_B chromosom 98.2 0.0027 5.7E-08 80.6 35.6 38 616-653 802-839 (1179)
21 PRK04778 septation ring format 98.2 0.0086 1.9E-07 70.4 37.0 131 316-449 55-208 (569)
22 COG1196 Smc Chromosome segrega 98.2 0.029 6.3E-07 71.5 44.2 20 73-92 26-45 (1163)
23 KOG0250 DNA repair protein RAD 98.2 0.011 2.4E-07 71.4 37.2 82 617-698 351-432 (1074)
24 TIGR02169 SMC_prok_A chromosom 98.2 0.032 6.8E-07 71.0 44.2 8 147-154 40-47 (1164)
25 KOG4674 Uncharacterized conser 98.1 0.045 9.7E-07 70.0 42.4 89 513-601 800-888 (1822)
26 PF04548 AIG1: AIG1 family; I 98.1 7.6E-06 1.6E-10 83.8 8.3 101 74-184 3-110 (212)
27 PRK02224 chromosome segregatio 98.1 0.016 3.4E-07 71.8 38.9 54 549-602 508-561 (880)
28 PF01926 MMR_HSR1: 50S ribosom 98.1 6.9E-06 1.5E-10 75.3 6.5 59 74-141 2-60 (116)
29 PF07888 CALCOCO1: Calcium bin 98.1 0.014 3E-07 66.8 33.9 112 548-659 204-325 (546)
30 COG1196 Smc Chromosome segrega 98.1 0.0064 1.4E-07 77.3 34.8 52 550-601 730-781 (1163)
31 cd01853 Toc34_like Toc34-like 98.0 5.9E-05 1.3E-09 79.2 13.5 64 69-141 29-92 (249)
32 PF09726 Macoilin: Transmembra 98.0 0.0052 1.1E-07 73.2 30.5 178 546-723 456-653 (697)
33 PF07888 CALCOCO1: Calcium bin 98.0 0.025 5.4E-07 64.8 34.4 36 204-241 27-62 (546)
34 TIGR00993 3a0901s04IAP86 chlor 98.0 7.2E-05 1.6E-09 86.5 14.0 63 73-144 120-182 (763)
35 PF06160 EzrA: Septation ring 98.0 0.039 8.5E-07 64.7 36.9 129 318-449 53-204 (560)
36 PRK02224 chromosome segregatio 98.0 0.017 3.8E-07 71.5 35.9 21 72-92 24-44 (880)
37 PF12718 Tropomyosin_1: Tropom 98.0 0.0015 3.3E-08 62.6 20.8 100 563-663 41-140 (143)
38 PF00261 Tropomyosin: Tropomyo 98.0 0.0048 1E-07 64.4 26.3 95 549-643 63-160 (237)
39 PF00261 Tropomyosin: Tropomyo 97.9 0.039 8.5E-07 57.6 33.1 40 510-549 35-74 (237)
40 KOG0161 Myosin class II heavy 97.9 0.18 3.9E-06 65.8 42.7 182 515-696 1010-1200(1930)
41 PF12128 DUF3584: Protein of u 97.9 0.19 4.2E-06 64.3 62.8 76 618-693 636-711 (1201)
42 KOG0161 Myosin class II heavy 97.9 0.22 4.8E-06 64.9 43.9 160 510-669 858-1033(1930)
43 PF05010 TACC: Transforming ac 97.9 0.034 7.5E-07 56.5 29.3 153 510-694 22-174 (207)
44 PHA02562 46 endonuclease subun 97.9 0.0099 2.1E-07 69.7 29.7 43 614-656 303-348 (562)
45 KOG0963 Transcription factor/C 97.8 0.053 1.2E-06 62.1 32.9 87 561-647 186-272 (629)
46 KOG0250 DNA repair protein RAD 97.8 0.18 4E-06 61.3 38.8 23 68-92 61-83 (1074)
47 PRK00089 era GTPase Era; Revie 97.8 8.4E-05 1.8E-09 79.7 9.6 60 70-141 4-66 (292)
48 PF00350 Dynamin_N: Dynamin fa 97.8 3.1E-05 6.7E-10 75.5 5.4 22 74-95 1-22 (168)
49 PRK11637 AmiB activator; Provi 97.8 0.033 7.2E-07 63.2 30.4 82 510-595 46-127 (428)
50 PRK04863 mukB cell division pr 97.8 0.088 1.9E-06 67.9 37.0 24 72-95 28-51 (1486)
51 PF13851 GAS: Growth-arrest sp 97.8 0.015 3.2E-07 59.1 24.5 158 546-711 30-190 (201)
52 KOG0995 Centromere-associated 97.7 0.11 2.4E-06 59.2 33.1 51 674-724 460-510 (581)
53 PRK03918 chromosome segregatio 97.7 0.15 3.2E-06 63.3 37.7 21 72-92 24-44 (880)
54 COG1579 Zn-ribbon protein, pos 97.7 0.0092 2E-07 61.7 22.0 91 639-730 90-180 (239)
55 KOG1853 LIS1-interacting prote 97.6 0.021 4.6E-07 58.2 23.2 147 540-698 35-181 (333)
56 KOG0971 Microtubule-associated 97.6 0.16 3.5E-06 60.2 33.2 78 649-727 459-549 (1243)
57 PF02421 FeoB_N: Ferrous iron 97.6 8E-05 1.7E-09 72.4 6.0 57 74-143 3-62 (156)
58 KOG0996 Structural maintenance 97.6 0.33 7.2E-06 59.4 44.5 40 53-92 83-129 (1293)
59 PF10174 Cast: RIM-binding pro 97.6 0.066 1.4E-06 64.4 31.3 109 582-691 305-423 (775)
60 TIGR00436 era GTP-binding prot 97.6 0.00012 2.5E-09 77.9 7.4 56 72-140 1-60 (270)
61 PF10174 Cast: RIM-binding pro 97.6 0.1 2.2E-06 62.8 32.5 170 563-732 321-508 (775)
62 PRK04863 mukB cell division pr 97.6 0.44 9.5E-06 61.7 39.9 30 632-661 443-472 (1486)
63 PF12128 DUF3584: Protein of u 97.6 0.51 1.1E-05 60.5 47.2 115 548-662 598-716 (1201)
64 PRK10698 phage shock protein P 97.6 0.044 9.5E-07 56.6 25.5 122 548-669 22-151 (222)
65 COG4942 Membrane-bound metallo 97.6 0.21 4.6E-06 55.5 31.9 185 507-698 41-248 (420)
66 TIGR03598 GTPase_YsxC ribosome 97.6 0.00045 9.7E-09 68.4 10.3 62 69-141 16-77 (179)
67 KOG0980 Actin-binding protein 97.6 0.14 3E-06 60.7 31.6 127 566-703 412-544 (980)
68 cd04163 Era Era subfamily. Er 97.6 0.00014 3.1E-09 69.3 6.5 60 72-140 4-63 (168)
69 PF02841 GBP_C: Guanylate-bind 97.6 0.056 1.2E-06 58.3 27.1 86 522-610 187-272 (297)
70 PF10220 DUF2146: Uncharacteri 97.5 0.1 2.2E-06 63.5 31.5 77 349-433 392-468 (895)
71 KOG4674 Uncharacterized conser 97.5 0.62 1.3E-05 60.2 44.0 207 513-724 131-362 (1822)
72 PF09726 Macoilin: Transmembra 97.5 0.068 1.5E-06 63.9 29.7 196 512-712 440-656 (697)
73 PF05010 TACC: Transforming ac 97.5 0.13 2.9E-06 52.2 28.6 109 546-668 65-173 (207)
74 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00012 2.6E-09 71.0 5.6 55 72-138 103-157 (157)
75 PRK04778 septation ring format 97.5 0.4 8.6E-06 56.6 43.2 168 434-601 142-340 (569)
76 KOG0995 Centromere-associated 97.4 0.36 7.8E-06 55.1 47.2 80 621-700 443-536 (581)
77 KOG1003 Actin filament-coating 97.4 0.061 1.3E-06 53.3 22.7 141 510-661 45-188 (205)
78 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.00099 2.1E-08 71.6 10.9 74 59-141 23-99 (313)
79 KOG0977 Nuclear envelope prote 97.4 0.48 1E-05 54.6 33.1 184 501-695 159-370 (546)
80 PRK03918 chromosome segregatio 97.3 0.47 1E-05 58.8 35.3 25 510-534 206-230 (880)
81 PF12718 Tropomyosin_1: Tropom 97.3 0.042 9.2E-07 52.8 20.2 97 557-654 21-117 (143)
82 cd01850 CDC_Septin CDC/Septin. 97.3 0.00032 7E-09 74.8 6.4 63 73-140 6-75 (276)
83 PF15619 Lebercilin: Ciliary p 97.3 0.23 4.9E-06 50.2 26.7 137 507-647 15-155 (194)
84 PF03193 DUF258: Protein of un 97.3 0.00011 2.3E-09 71.8 2.3 70 58-141 23-100 (161)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.3 0.036 7.9E-07 52.5 19.4 128 557-692 3-130 (132)
86 PF13851 GAS: Growth-arrest sp 97.3 0.25 5.4E-06 50.2 26.5 106 519-624 28-139 (201)
87 cd01849 YlqF_related_GTPase Yl 97.3 0.00038 8.1E-09 67.5 5.8 55 72-138 101-155 (155)
88 cd01894 EngA1 EngA1 subfamily. 97.3 0.00055 1.2E-08 65.1 6.9 58 75-141 1-58 (157)
89 TIGR01843 type_I_hlyD type I s 97.3 0.056 1.2E-06 60.7 24.0 43 559-601 139-181 (423)
90 KOG0980 Actin-binding protein 97.3 0.64 1.4E-05 55.5 32.1 102 558-659 411-522 (980)
91 cd01878 HflX HflX subfamily. 97.2 0.00097 2.1E-08 67.3 8.0 59 68-139 38-100 (204)
92 cd04101 RabL4 RabL4 (Rab-like4 97.2 0.00068 1.5E-08 65.4 6.6 60 74-138 3-62 (164)
93 TIGR02680 conserved hypothetic 97.2 1.3 2.9E-05 57.4 37.7 21 72-92 25-45 (1353)
94 cd04178 Nucleostemin_like Nucl 97.2 0.00063 1.4E-08 67.4 6.0 55 72-138 118-172 (172)
95 cd01897 NOG NOG1 is a nucleola 97.2 0.0016 3.5E-08 63.0 8.8 57 73-139 2-58 (168)
96 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.2 0.069 1.5E-06 50.6 19.5 125 507-642 6-130 (132)
97 cd00880 Era_like Era (E. coli 97.2 0.00099 2.1E-08 62.5 6.9 59 76-142 1-59 (163)
98 TIGR01005 eps_transp_fam exopo 97.2 0.13 2.9E-06 62.6 27.0 207 516-727 192-404 (754)
99 KOG1423 Ras-like GTPase ERA [C 97.1 0.00073 1.6E-08 71.2 6.2 65 69-142 70-134 (379)
100 PRK09039 hypothetical protein; 97.1 0.1 2.2E-06 57.5 23.2 123 574-708 77-199 (343)
101 cd01898 Obg Obg subfamily. Th 97.1 0.0019 4E-08 62.6 8.7 54 74-139 3-59 (170)
102 cd04104 p47_IIGP_like p47 (47- 97.1 0.0011 2.4E-08 66.9 7.4 96 74-180 4-102 (197)
103 KOG0999 Microtubule-associated 97.1 0.78 1.7E-05 52.0 30.0 164 512-676 44-224 (772)
104 TIGR00231 small_GTP small GTP- 97.1 0.00098 2.1E-08 62.5 6.2 57 74-138 4-60 (161)
105 PF15066 CAGE1: Cancer-associa 97.1 0.52 1.1E-05 52.4 27.4 155 546-712 358-523 (527)
106 PRK09039 hypothetical protein; 97.1 0.2 4.3E-06 55.2 24.7 109 546-658 77-185 (343)
107 KOG0933 Structural maintenance 97.0 1.3 2.8E-05 53.6 37.9 49 610-658 892-940 (1174)
108 cd04164 trmE TrmE (MnmE, ThdF, 97.0 0.0019 4.1E-08 61.2 7.7 60 73-141 3-62 (157)
109 PRK12289 GTPase RsgA; Reviewed 97.0 0.0008 1.7E-08 74.1 5.7 60 73-143 174-239 (352)
110 PF10473 CENP-F_leu_zip: Leuci 97.0 0.17 3.8E-06 48.2 20.3 123 560-694 6-128 (140)
111 cd04171 SelB SelB subfamily. 97.0 0.001 2.3E-08 63.7 5.6 23 73-95 2-24 (164)
112 cd04142 RRP22 RRP22 subfamily. 97.0 0.0028 6.2E-08 64.1 8.8 59 74-140 3-61 (198)
113 cd01890 LepA LepA subfamily. 97.0 0.0025 5.4E-08 62.5 8.2 67 74-140 3-79 (179)
114 KOG0976 Rho/Rac1-interacting s 97.0 1.3 2.8E-05 52.2 41.7 66 561-626 334-402 (1265)
115 cd01876 YihA_EngB The YihA (En 97.0 0.0014 3E-08 62.6 6.1 57 74-141 2-58 (170)
116 KOG1029 Endocytic adaptor prot 97.0 1.3 2.8E-05 52.2 30.1 154 563-720 436-609 (1118)
117 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0013 2.8E-08 62.6 5.7 55 73-139 85-139 (141)
118 PRK15494 era GTPase Era; Provi 97.0 0.0013 2.8E-08 72.3 6.4 58 69-139 50-111 (339)
119 PRK00454 engB GTP-binding prot 96.9 0.0015 3.2E-08 65.1 6.3 59 70-139 23-81 (196)
120 PRK12288 GTPase RsgA; Reviewed 96.9 0.00081 1.8E-08 74.0 4.5 58 73-141 207-270 (347)
121 COG1579 Zn-ribbon protein, pos 96.9 0.56 1.2E-05 48.7 24.7 37 555-591 50-86 (239)
122 KOG0612 Rho-associated, coiled 96.9 1.4 3.1E-05 54.4 31.4 40 53-92 69-109 (1317)
123 TIGR02977 phageshock_pspA phag 96.9 0.58 1.3E-05 48.2 25.1 117 551-667 25-149 (219)
124 PRK12298 obgE GTPase CgtA; Rev 96.9 0.0015 3.2E-08 73.1 6.4 57 71-139 159-218 (390)
125 COG5185 HEC1 Protein involved 96.9 1 2.3E-05 50.1 33.4 86 642-727 459-554 (622)
126 cd01861 Rab6 Rab6 subfamily. 96.9 0.0016 3.4E-08 62.5 5.7 57 74-138 3-59 (161)
127 PF05701 WEMBL: Weak chloropla 96.9 1.5 3.2E-05 51.3 33.6 36 569-604 114-149 (522)
128 PRK01156 chromosome segregatio 96.8 2.4 5.1E-05 52.9 37.0 21 72-92 24-44 (895)
129 cd01855 YqeH YqeH. YqeH is an 96.8 0.0015 3.2E-08 65.4 4.9 55 73-138 129-190 (190)
130 cd01868 Rab11_like Rab11-like. 96.8 0.002 4.4E-08 62.2 5.7 57 74-138 6-62 (165)
131 TIGR02836 spore_IV_A stage IV 96.8 0.0017 3.6E-08 71.8 5.6 74 68-142 15-105 (492)
132 PF15070 GOLGA2L5: Putative go 96.8 1.7 3.7E-05 51.4 30.7 36 633-669 155-190 (617)
133 KOG0996 Structural maintenance 96.8 2.3 5E-05 52.5 44.3 152 546-698 408-559 (1293)
134 KOG0964 Structural maintenance 96.8 2.1 4.5E-05 51.8 37.3 45 550-594 328-372 (1200)
135 PF05049 IIGP: Interferon-indu 96.8 0.0033 7.1E-08 69.4 7.7 97 68-176 33-132 (376)
136 COG1161 Predicted GTPases [Gen 96.8 0.0028 6.2E-08 69.1 7.2 58 72-142 133-191 (322)
137 KOG0971 Microtubule-associated 96.8 1.1 2.4E-05 53.6 27.9 37 560-596 321-357 (1243)
138 cd04119 RJL RJL (RabJ-Like) su 96.8 0.0024 5.1E-08 61.4 5.8 58 74-139 3-60 (168)
139 cd00882 Ras_like_GTPase Ras-li 96.7 0.0013 2.8E-08 60.7 3.8 57 76-140 1-57 (157)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 96.7 0.0021 4.4E-08 62.1 5.3 60 73-139 2-61 (168)
141 PF04012 PspA_IM30: PspA/IM30 96.7 0.66 1.4E-05 47.7 24.2 105 559-663 32-144 (221)
142 PF08477 Miro: Miro-like prote 96.7 0.0086 1.9E-07 54.6 9.1 90 74-178 2-92 (119)
143 COG1084 Predicted GTPase [Gene 96.7 0.0045 9.8E-08 66.2 8.1 103 53-166 147-255 (346)
144 TIGR03007 pepcterm_ChnLen poly 96.7 0.43 9.4E-06 55.2 25.2 81 521-601 164-270 (498)
145 PRK09563 rbgA GTPase YlqF; Rev 96.7 0.0038 8.3E-08 67.0 7.6 61 70-142 120-180 (287)
146 TIGR01005 eps_transp_fam exopo 96.7 0.61 1.3E-05 56.9 27.4 24 578-601 288-311 (754)
147 cd01864 Rab19 Rab19 subfamily. 96.7 0.0027 5.8E-08 61.5 5.8 58 73-138 5-62 (165)
148 COG3840 ThiQ ABC-type thiamine 96.7 0.0016 3.4E-08 64.3 4.0 38 73-119 27-64 (231)
149 PF13870 DUF4201: Domain of un 96.7 0.47 1E-05 47.1 21.9 152 510-661 5-175 (177)
150 PRK11058 GTPase HflX; Provisio 96.7 0.0056 1.2E-07 69.3 8.9 55 71-138 197-255 (426)
151 TIGR03017 EpsF chain length de 96.7 0.73 1.6E-05 52.4 26.2 111 616-727 260-370 (444)
152 cd01866 Rab2 Rab2 subfamily. 96.7 0.0029 6.3E-08 61.6 5.8 60 71-138 4-63 (168)
153 KOG0964 Structural maintenance 96.7 2.5 5.4E-05 51.2 31.3 160 569-729 263-441 (1200)
154 cd00154 Rab Rab family. Rab G 96.6 0.0031 6.8E-08 59.4 5.8 57 74-138 3-59 (159)
155 PF15070 GOLGA2L5: Putative go 96.6 1.2 2.7E-05 52.6 27.9 25 581-605 83-107 (617)
156 cd04113 Rab4 Rab4 subfamily. 96.6 0.0033 7.2E-08 60.4 5.8 58 74-139 3-60 (161)
157 PF09787 Golgin_A5: Golgin sub 96.6 2.1 4.6E-05 49.8 31.7 162 562-726 205-382 (511)
158 cd01895 EngA2 EngA2 subfamily. 96.6 0.0034 7.4E-08 60.4 5.7 59 73-140 4-62 (174)
159 cd01881 Obg_like The Obg-like 96.6 0.0039 8.4E-08 60.6 6.1 52 76-139 1-55 (176)
160 cd00881 GTP_translation_factor 96.6 0.0069 1.5E-07 59.5 7.9 22 74-95 2-23 (189)
161 cd04145 M_R_Ras_like M-Ras/R-R 96.6 0.0036 7.8E-08 60.1 5.7 58 73-139 4-61 (164)
162 TIGR01843 type_I_hlyD type I s 96.6 0.5 1.1E-05 53.0 23.9 55 548-602 135-189 (423)
163 cd01860 Rab5_related Rab5-rela 96.6 0.0037 8.1E-08 60.0 5.8 55 74-138 4-60 (163)
164 PRK10698 phage shock protein P 96.6 1.1 2.4E-05 46.3 24.3 147 503-663 30-184 (222)
165 PRK00098 GTPase RsgA; Reviewed 96.6 0.0026 5.5E-08 68.7 5.1 23 73-95 166-188 (298)
166 cd01865 Rab3 Rab3 subfamily. 96.6 0.0037 8.1E-08 60.6 5.8 58 74-139 4-61 (165)
167 TIGR03185 DNA_S_dndD DNA sulfu 96.6 2.8 6E-05 50.4 31.9 22 71-92 28-49 (650)
168 cd04118 Rab24 Rab24 subfamily. 96.6 0.0036 7.8E-08 62.4 5.8 59 74-139 3-61 (193)
169 cd04122 Rab14 Rab14 subfamily. 96.6 0.0039 8.4E-08 60.5 5.8 57 74-138 5-61 (166)
170 smart00175 RAB Rab subfamily o 96.5 0.0044 9.6E-08 59.4 6.0 57 74-138 3-59 (164)
171 COG4372 Uncharacterized protei 96.5 1.7 3.6E-05 47.5 27.0 55 550-604 109-163 (499)
172 PF04849 HAP1_N: HAP1 N-termin 96.5 0.18 4E-06 53.8 18.4 129 515-643 164-302 (306)
173 cd04139 RalA_RalB RalA/RalB su 96.5 0.0081 1.8E-07 57.5 7.8 57 74-139 3-59 (164)
174 COG3596 Predicted GTPase [Gene 96.5 0.0026 5.7E-08 66.5 4.5 60 69-140 38-99 (296)
175 PF00009 GTP_EFTU: Elongation 96.5 0.0018 3.8E-08 64.8 3.2 103 69-181 1-118 (188)
176 TIGR03017 EpsF chain length de 96.5 0.87 1.9E-05 51.8 25.5 83 519-601 172-277 (444)
177 COG5019 CDC3 Septin family pro 96.5 0.0039 8.4E-08 67.7 5.8 68 69-140 22-94 (373)
178 TIGR03156 GTP_HflX GTP-binding 96.5 0.0039 8.5E-08 68.8 6.1 56 70-138 188-247 (351)
179 cd04106 Rab23_lke Rab23-like s 96.5 0.0056 1.2E-07 58.8 6.5 59 74-138 3-61 (162)
180 cd01896 DRG The developmentall 96.5 0.0049 1.1E-07 64.1 6.5 54 73-139 2-58 (233)
181 cd04159 Arl10_like Arl10-like 96.5 0.0039 8.6E-08 58.9 5.4 53 74-138 2-54 (159)
182 cd04112 Rab26 Rab26 subfamily. 96.5 0.004 8.6E-08 62.3 5.4 58 74-138 3-60 (191)
183 PF04849 HAP1_N: HAP1 N-termin 96.5 1.3 2.9E-05 47.4 24.3 96 566-661 162-257 (306)
184 KOG0612 Rho-associated, coiled 96.5 1.6 3.5E-05 54.0 27.6 149 547-697 491-659 (1317)
185 KOG0946 ER-Golgi vesicle-tethe 96.5 0.87 1.9E-05 53.9 24.4 49 546-594 667-715 (970)
186 TIGR03007 pepcterm_ChnLen poly 96.5 0.57 1.2E-05 54.2 23.8 203 520-725 156-381 (498)
187 COG1160 Predicted GTPases [Gen 96.4 0.011 2.5E-07 65.8 9.2 89 72-176 4-103 (444)
188 TIGR00157 ribosome small subun 96.4 0.003 6.6E-08 66.2 4.5 22 73-94 122-143 (245)
189 KOG0978 E3 ubiquitin ligase in 96.4 3 6.6E-05 49.5 32.4 115 547-661 507-624 (698)
190 cd01856 YlqF YlqF. Proteins o 96.4 0.0053 1.1E-07 60.5 6.0 54 73-138 117-170 (171)
191 COG1340 Uncharacterized archae 96.4 1.7 3.6E-05 46.4 33.2 32 550-581 69-100 (294)
192 KOG1003 Actin filament-coating 96.4 1.2 2.5E-05 44.5 26.2 86 512-608 5-90 (205)
193 TIGR02680 conserved hypothetic 96.4 2.7 5.9E-05 54.6 31.7 36 504-539 742-777 (1353)
194 PF05667 DUF812: Protein of un 96.4 0.73 1.6E-05 54.3 24.2 46 621-666 423-468 (594)
195 PF08317 Spc7: Spc7 kinetochor 96.4 1.2 2.5E-05 48.9 24.6 17 643-659 274-290 (325)
196 cd04124 RabL2 RabL2 subfamily. 96.4 0.0054 1.2E-07 59.4 5.7 56 74-139 3-60 (161)
197 PF01576 Myosin_tail_1: Myosin 96.4 0.00084 1.8E-08 82.2 0.0 80 614-693 268-347 (859)
198 cd04116 Rab9 Rab9 subfamily. 96.4 0.0058 1.3E-07 59.4 5.9 59 72-138 6-64 (170)
199 smart00173 RAS Ras subfamily o 96.4 0.0047 1E-07 59.5 5.2 57 74-139 3-59 (164)
200 cd01862 Rab7 Rab7 subfamily. 96.4 0.0059 1.3E-07 59.1 5.9 58 74-139 3-60 (172)
201 KOG4673 Transcription factor T 96.4 3 6.4E-05 48.7 38.9 120 541-667 514-634 (961)
202 cd04136 Rap_like Rap-like subf 96.4 0.005 1.1E-07 59.1 5.3 57 74-139 4-60 (163)
203 cd01867 Rab8_Rab10_Rab13_like 96.4 0.0048 1E-07 60.0 5.2 57 74-138 6-62 (167)
204 cd01854 YjeQ_engC YjeQ/EngC. 96.4 0.0044 9.5E-08 66.5 5.3 59 72-141 162-226 (287)
205 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.4 0.0057 1.2E-07 59.2 5.7 57 74-138 5-61 (166)
206 KOG1899 LAR transmembrane tyro 96.3 0.77 1.7E-05 52.7 22.5 205 477-695 78-288 (861)
207 cd04138 H_N_K_Ras_like H-Ras/N 96.3 0.006 1.3E-07 58.2 5.6 56 74-138 4-59 (162)
208 KOG2655 Septin family protein 96.3 0.0057 1.2E-07 66.8 5.8 64 74-140 24-91 (366)
209 cd01891 TypA_BipA TypA (tyrosi 96.3 0.0042 9E-08 62.3 4.5 66 71-139 2-76 (194)
210 cd04109 Rab28 Rab28 subfamily. 96.3 0.0075 1.6E-07 61.6 6.5 58 74-138 3-60 (215)
211 PRK04213 GTP-binding protein; 96.3 0.0075 1.6E-07 60.6 6.3 56 71-140 9-64 (201)
212 KOG0933 Structural maintenance 96.3 4.2 9.1E-05 49.6 36.1 85 567-651 325-412 (1174)
213 COG1116 TauB ABC-type nitrate/ 96.3 0.0062 1.3E-07 63.1 5.7 23 73-95 31-53 (248)
214 cd04115 Rab33B_Rab33A Rab33B/R 96.3 0.0086 1.9E-07 58.4 6.4 60 72-139 3-62 (170)
215 PF00735 Septin: Septin; Inte 96.3 0.0049 1.1E-07 65.9 4.9 65 74-140 7-75 (281)
216 TIGR03594 GTPase_EngA ribosome 96.3 0.018 3.8E-07 65.2 9.8 56 73-139 1-58 (429)
217 cd04127 Rab27A Rab27a subfamil 96.3 0.0084 1.8E-07 58.8 6.3 62 72-138 5-73 (180)
218 cd00879 Sar1 Sar1 subfamily. 96.2 0.015 3.3E-07 57.6 8.2 67 58-139 7-74 (190)
219 cd01863 Rab18 Rab18 subfamily. 96.2 0.007 1.5E-07 58.1 5.5 58 74-139 3-60 (161)
220 TIGR03596 GTPase_YlqF ribosome 96.2 0.012 2.7E-07 62.7 7.9 59 70-140 117-175 (276)
221 KOG1547 Septin CDC10 and relat 96.2 0.0079 1.7E-07 61.5 5.9 64 74-140 49-116 (336)
222 PRK11281 hypothetical protein; 96.2 4.8 0.0001 50.9 31.1 93 513-605 82-176 (1113)
223 cd00876 Ras Ras family. The R 96.2 0.0074 1.6E-07 57.4 5.5 57 74-139 2-58 (160)
224 cd00877 Ran Ran (Ras-related n 96.2 0.0082 1.8E-07 58.6 5.9 58 74-139 3-60 (166)
225 cd04155 Arl3 Arl3 subfamily. 96.2 0.016 3.5E-07 56.3 7.9 57 68-138 12-68 (173)
226 cd00157 Rho Rho (Ras homology) 96.2 0.009 2E-07 57.8 6.1 57 74-139 3-59 (171)
227 cd04110 Rab35 Rab35 subfamily. 96.2 0.0077 1.7E-07 60.7 5.6 57 72-138 7-65 (199)
228 PLN03118 Rab family protein; P 96.2 0.0078 1.7E-07 61.2 5.7 60 70-139 14-73 (211)
229 PF08317 Spc7: Spc7 kinetochor 96.2 2.6 5.7E-05 46.1 29.7 92 556-654 155-246 (325)
230 cd04166 CysN_ATPS CysN_ATPS su 96.2 0.01 2.2E-07 60.4 6.5 22 74-95 2-23 (208)
231 cd04111 Rab39 Rab39 subfamily. 96.2 0.0092 2E-07 60.9 6.1 58 74-138 5-62 (211)
232 PRK00093 GTP-binding protein D 96.1 0.023 4.9E-07 64.5 9.9 56 73-140 3-61 (435)
233 PF05483 SCP-1: Synaptonemal c 96.1 4 8.6E-05 47.8 42.5 136 503-639 233-371 (786)
234 COG4942 Membrane-bound metallo 96.1 3.1 6.8E-05 46.5 29.2 56 546-601 62-117 (420)
235 cd04123 Rab21 Rab21 subfamily. 96.1 0.0094 2E-07 56.8 5.8 56 74-138 3-59 (162)
236 cd04177 RSR1 RSR1 subgroup. R 96.1 0.0093 2E-07 58.0 5.8 58 74-140 4-61 (168)
237 cd04137 RheB Rheb (Ras Homolog 96.1 0.01 2.2E-07 58.3 6.0 54 74-139 4-60 (180)
238 cd01859 MJ1464 MJ1464. This f 96.1 0.021 4.6E-07 55.0 8.1 55 72-138 102-156 (156)
239 cd04125 RabA_like RabA-like su 96.1 0.011 2.3E-07 58.9 6.1 58 74-139 3-60 (188)
240 COG0486 ThdF Predicted GTPase 96.1 0.0089 1.9E-07 66.9 6.0 61 69-139 216-276 (454)
241 PF01576 Myosin_tail_1: Myosin 96.1 0.0015 3.3E-08 79.9 0.0 172 512-684 216-394 (859)
242 cd04107 Rab32_Rab38 Rab38/Rab3 96.1 0.012 2.5E-07 59.4 6.4 58 74-138 3-60 (201)
243 cd04146 RERG_RasL11_like RERG/ 96.1 0.01 2.2E-07 57.5 5.7 57 74-139 2-58 (165)
244 cd01889 SelB_euk SelB subfamil 96.1 0.013 2.9E-07 58.5 6.7 21 74-94 3-23 (192)
245 PF14073 Cep57_CLD: Centrosome 96.1 1.7 3.7E-05 42.9 21.9 63 531-593 24-86 (178)
246 PRK10929 putative mechanosensi 96.1 4.5 9.7E-05 51.1 29.6 56 614-669 177-232 (1109)
247 smart00178 SAR Sar1p-like memb 96.1 0.013 2.9E-07 58.2 6.6 54 72-139 18-72 (184)
248 TIGR03594 GTPase_EngA ribosome 96.1 0.03 6.6E-07 63.3 10.3 60 72-140 173-232 (429)
249 TIGR00450 mnmE_trmE_thdF tRNA 96.0 0.011 2.3E-07 67.4 6.4 61 69-139 202-262 (442)
250 cd01870 RhoA_like RhoA-like su 96.0 0.011 2.3E-07 57.7 5.7 57 74-139 4-60 (175)
251 PF09787 Golgin_A5: Golgin sub 96.0 4.4 9.6E-05 47.2 32.0 108 513-620 209-330 (511)
252 TIGR01000 bacteriocin_acc bact 96.0 1.4 2.9E-05 50.6 23.5 22 513-534 99-120 (457)
253 PRK05291 trmE tRNA modificatio 96.0 0.01 2.3E-07 67.7 6.2 58 73-139 217-274 (449)
254 PF14073 Cep57_CLD: Centrosome 96.0 1.1 2.3E-05 44.4 19.0 91 614-712 61-154 (178)
255 PF14662 CCDC155: Coiled-coil 96.0 1.9 4.2E-05 43.0 24.5 116 513-632 24-145 (193)
256 cd01879 FeoB Ferrous iron tran 96.0 0.013 2.8E-07 55.8 5.9 56 76-141 1-56 (158)
257 PF09730 BicD: Microtubule-ass 96.0 1.5 3.2E-05 52.5 23.8 102 568-669 356-457 (717)
258 cd04135 Tc10 TC10 subfamily. 96.0 0.013 2.9E-07 57.0 6.1 59 74-141 3-61 (174)
259 PRK01156 chromosome segregatio 96.0 6.7 0.00015 48.9 36.7 17 700-716 417-433 (895)
260 cd01893 Miro1 Miro1 subfamily. 96.0 0.014 3.1E-07 56.6 6.2 54 74-139 3-58 (166)
261 PRK12299 obgE GTPase CgtA; Rev 95.9 0.012 2.5E-07 64.6 6.1 57 71-139 158-217 (335)
262 cd04156 ARLTS1 ARLTS1 subfamil 95.9 0.016 3.5E-07 55.5 6.4 54 74-139 2-55 (160)
263 COG1162 Predicted GTPases [Gen 95.9 0.0072 1.6E-07 64.5 4.2 58 73-141 166-229 (301)
264 PRK03003 GTP-binding protein D 95.9 0.048 1E-06 62.7 11.2 56 71-139 211-270 (472)
265 PTZ00258 GTP-binding protein; 95.9 0.011 2.4E-07 65.9 5.7 67 70-139 20-96 (390)
266 cd04117 Rab15 Rab15 subfamily. 95.9 0.014 2.9E-07 56.6 5.8 58 74-139 3-60 (161)
267 cd04114 Rab30 Rab30 subfamily. 95.9 0.017 3.7E-07 55.8 6.5 63 69-139 5-67 (169)
268 cd04140 ARHI_like ARHI subfami 95.9 0.016 3.5E-07 56.1 6.2 57 74-139 4-60 (165)
269 smart00174 RHO Rho (Ras homolo 95.9 0.012 2.6E-07 57.3 5.3 57 74-139 1-57 (174)
270 PRK03003 GTP-binding protein D 95.9 0.017 3.7E-07 66.4 7.4 77 54-139 20-97 (472)
271 cd04175 Rap1 Rap1 subgroup. T 95.9 0.029 6.2E-07 54.1 7.9 57 74-139 4-60 (164)
272 PRK00093 GTP-binding protein D 95.9 0.043 9.3E-07 62.3 10.4 57 71-140 173-233 (435)
273 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.8 0.018 3.9E-07 56.6 6.4 56 71-139 15-70 (174)
274 PF05667 DUF812: Protein of un 95.8 5.6 0.00012 47.1 30.8 45 559-603 389-433 (594)
275 PF09730 BicD: Microtubule-ass 95.8 6.1 0.00013 47.4 31.0 107 612-722 585-712 (717)
276 KOG0448 Mitofusin 1 GTPase, in 95.8 0.21 4.6E-06 58.2 15.6 25 69-93 107-131 (749)
277 cd04157 Arl6 Arl6 subfamily. 95.8 0.02 4.4E-07 54.7 6.5 55 74-139 2-56 (162)
278 PLN03110 Rab GTPase; Provision 95.8 0.016 3.4E-07 59.4 6.0 60 71-138 12-71 (216)
279 cd04160 Arfrp1 Arfrp1 subfamil 95.8 0.012 2.7E-07 56.7 4.9 59 74-139 2-61 (167)
280 cd04176 Rap2 Rap2 subgroup. T 95.8 0.018 3.9E-07 55.4 6.0 57 74-139 4-60 (163)
281 cd04170 EF-G_bact Elongation f 95.7 0.039 8.4E-07 58.5 8.9 22 74-95 2-23 (268)
282 cd01884 EF_Tu EF-Tu subfamily. 95.7 0.03 6.4E-07 56.6 7.6 99 72-178 3-110 (195)
283 cd04132 Rho4_like Rho4-like su 95.7 0.019 4.2E-07 56.7 6.1 58 74-139 3-60 (187)
284 TIGR01000 bacteriocin_acc bact 95.7 1.1 2.4E-05 51.4 21.1 27 514-540 93-119 (457)
285 PF05911 DUF869: Plant protein 95.7 3.5 7.6E-05 49.9 25.7 155 523-691 43-207 (769)
286 PF12325 TMF_TATA_bd: TATA ele 95.7 0.61 1.3E-05 43.4 15.3 101 559-660 18-118 (120)
287 COG4477 EzrA Negative regulato 95.7 5.5 0.00012 45.6 46.0 129 524-652 254-403 (570)
288 cd00878 Arf_Arl Arf (ADP-ribos 95.6 0.025 5.4E-07 54.1 6.4 53 74-139 2-54 (158)
289 COG1136 SalX ABC-type antimicr 95.6 0.011 2.5E-07 60.8 4.2 23 73-95 33-55 (226)
290 TIGR02528 EutP ethanolamine ut 95.6 0.014 3E-07 54.9 4.6 22 74-95 3-24 (142)
291 TIGR03597 GTPase_YqeH ribosome 95.6 0.014 3.1E-07 64.7 5.2 57 73-140 156-216 (360)
292 KOG0978 E3 ubiquitin ligase in 95.6 7 0.00015 46.5 32.5 17 527-543 432-448 (698)
293 cd04148 RGK RGK subfamily. Th 95.6 0.02 4.4E-07 58.9 5.9 57 74-139 3-61 (221)
294 cd04108 Rab36_Rab34 Rab34/Rab3 95.6 0.023 4.9E-07 55.8 6.0 58 74-139 3-60 (170)
295 CHL00189 infB translation init 95.6 0.031 6.7E-07 67.1 8.1 98 70-178 243-340 (742)
296 PRK09518 bifunctional cytidyla 95.6 0.064 1.4E-06 64.9 10.9 55 72-139 451-509 (712)
297 cd04147 Ras_dva Ras-dva subfam 95.6 0.022 4.8E-07 57.3 5.9 55 74-139 2-58 (198)
298 cd04154 Arl2 Arl2 subfamily. 95.5 0.019 4.2E-07 56.1 5.3 54 73-139 16-69 (173)
299 cd01899 Ygr210 Ygr210 subfamil 95.5 0.023 5E-07 61.8 6.3 62 74-138 1-79 (318)
300 PRK12296 obgE GTPase CgtA; Rev 95.5 0.02 4.4E-07 65.7 6.1 55 71-139 159-217 (500)
301 TIGR02729 Obg_CgtA Obg family 95.5 0.05 1.1E-06 59.6 8.9 57 71-139 157-216 (329)
302 cd01900 YchF YchF subfamily. 95.5 0.018 3.8E-07 61.4 5.2 63 74-139 1-73 (274)
303 PRK13796 GTPase YqeH; Provisio 95.5 0.018 4E-07 63.9 5.5 55 73-139 162-221 (365)
304 PTZ00132 GTP-binding nuclear p 95.5 0.022 4.7E-07 58.1 5.6 58 73-138 11-68 (215)
305 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.4 0.025 5.4E-07 55.6 5.7 57 74-139 5-61 (172)
306 COG3206 GumC Uncharacterized p 95.4 5.9 0.00013 45.4 25.8 215 510-729 187-403 (458)
307 KOG4643 Uncharacterized coiled 95.4 9.2 0.0002 46.7 31.2 169 510-687 407-588 (1195)
308 PF10473 CENP-F_leu_zip: Leuci 95.4 2.6 5.5E-05 40.3 19.2 27 510-536 16-42 (140)
309 PLN03108 Rab family protein; P 95.4 0.023 5E-07 57.9 5.4 57 74-138 9-65 (210)
310 cd01885 EF2 EF2 (for archaea a 95.4 0.057 1.2E-06 55.8 8.3 94 74-172 3-112 (222)
311 cd04167 Snu114p Snu114p subfam 95.4 0.051 1.1E-06 55.5 7.9 22 74-95 3-24 (213)
312 PLN03188 kinesin-12 family pro 95.4 10 0.00022 47.8 28.2 270 445-726 879-1210(1320)
313 PRK12297 obgE GTPase CgtA; Rev 95.4 0.045 9.7E-07 61.9 8.1 57 71-139 158-217 (424)
314 KOG1029 Endocytic adaptor prot 95.4 8.4 0.00018 45.8 32.2 82 565-653 431-515 (1118)
315 cd01886 EF-G Elongation factor 95.3 0.04 8.7E-07 58.6 7.3 92 74-173 2-104 (270)
316 KOG0018 Structural maintenance 95.3 11 0.00023 46.6 36.9 25 375-399 159-183 (1141)
317 PF06160 EzrA: Septation ring 95.3 8.5 0.00018 45.4 43.1 35 567-601 302-336 (560)
318 cd04143 Rhes_like Rhes_like su 95.3 0.062 1.3E-06 56.4 8.3 57 74-139 3-59 (247)
319 KOG0963 Transcription factor/C 95.3 8 0.00017 45.0 43.5 206 512-719 190-424 (629)
320 cd04162 Arl9_Arfrp2_like Arl9/ 95.2 0.028 6E-07 54.8 5.3 54 74-139 2-55 (164)
321 PRK09601 GTP-binding protein Y 95.2 0.039 8.4E-07 61.0 6.9 64 73-139 4-77 (364)
322 cd01882 BMS1 Bms1. Bms1 is an 95.2 0.029 6.4E-07 57.9 5.7 55 69-137 37-92 (225)
323 cd04144 Ras2 Ras2 subfamily. 95.2 0.022 4.9E-07 56.8 4.7 56 74-138 2-57 (190)
324 PRK09602 translation-associate 95.2 0.033 7.2E-07 62.5 6.5 65 73-139 3-83 (396)
325 PF00071 Ras: Ras family; Int 95.2 0.022 4.7E-07 54.7 4.4 58 74-139 2-59 (162)
326 PF14915 CCDC144C: CCDC144C pr 95.1 5.5 0.00012 42.4 32.7 23 635-657 183-205 (305)
327 cd04169 RF3 RF3 subfamily. Pe 95.1 0.082 1.8E-06 56.2 8.7 23 72-94 3-25 (267)
328 PRK09554 feoB ferrous iron tra 95.1 0.035 7.7E-07 67.3 6.7 57 73-142 5-64 (772)
329 COG3096 MukB Uncharacterized p 95.1 9.7 0.00021 45.0 28.7 79 555-633 388-472 (1480)
330 cd04152 Arl4_Arl7 Arl4/Arl7 su 95.1 0.047 1E-06 54.2 6.4 58 70-138 3-62 (183)
331 cd04168 TetM_like Tet(M)-like 95.1 0.055 1.2E-06 56.5 7.2 90 74-171 2-102 (237)
332 TIGR01393 lepA GTP-binding pro 95.1 0.062 1.3E-06 63.5 8.4 102 71-177 3-114 (595)
333 cd04158 ARD1 ARD1 subfamily. 95.0 0.04 8.6E-07 53.8 5.7 53 74-139 2-54 (169)
334 KOG0979 Structural maintenance 95.0 6.3 0.00014 48.2 24.4 40 545-584 190-229 (1072)
335 COG1842 PspA Phage shock prote 95.0 5.3 0.00011 41.4 25.6 103 559-661 33-136 (225)
336 KOG0018 Structural maintenance 95.0 12 0.00025 46.3 26.5 20 73-92 27-46 (1141)
337 cd01130 VirB11-like_ATPase Typ 95.0 0.049 1.1E-06 54.5 6.2 40 56-95 10-49 (186)
338 KOG2485 Conserved ATP/GTP bind 94.9 0.042 9.1E-07 58.6 5.7 78 73-161 145-229 (335)
339 cd02019 NK Nucleoside/nucleoti 94.9 0.028 6.2E-07 46.8 3.7 58 73-135 1-63 (69)
340 CHL00071 tufA elongation facto 94.9 0.093 2E-06 59.2 9.0 104 68-179 9-121 (409)
341 KOG1191 Mitochondrial GTPase [ 94.9 0.033 7.1E-07 62.6 5.2 61 69-139 267-327 (531)
342 KOG4643 Uncharacterized coiled 94.9 13 0.00028 45.6 42.6 99 561-659 419-523 (1195)
343 COG4136 ABC-type uncharacteriz 94.9 0.036 7.7E-07 53.3 4.6 40 72-118 29-69 (213)
344 cd04105 SR_beta Signal recogni 94.9 0.049 1.1E-06 55.3 6.2 57 74-139 3-59 (203)
345 smart00787 Spc7 Spc7 kinetocho 94.9 7.1 0.00015 42.5 30.4 48 554-601 148-195 (312)
346 PTZ00369 Ras-like protein; Pro 94.9 0.047 1E-06 54.4 5.8 57 74-139 8-64 (189)
347 cd04131 Rnd Rnd subfamily. Th 94.8 0.051 1.1E-06 53.9 5.9 57 74-139 4-60 (178)
348 PRK10869 recombination and rep 94.8 11 0.00024 44.4 26.8 66 645-710 306-377 (553)
349 cd01892 Miro2 Miro2 subfamily. 94.8 0.061 1.3E-06 52.6 6.4 63 69-138 2-64 (169)
350 cd04149 Arf6 Arf6 subfamily. 94.8 0.062 1.3E-06 52.6 6.4 54 73-139 11-64 (168)
351 PRK04004 translation initiatio 94.8 0.094 2E-06 61.9 8.9 23 73-95 8-30 (586)
352 KOG4593 Mitotic checkpoint pro 94.8 12 0.00025 44.3 33.8 164 547-712 148-319 (716)
353 cd04128 Spg1 Spg1p. Spg1p (se 94.8 0.054 1.2E-06 53.9 5.9 58 74-139 3-60 (182)
354 COG4372 Uncharacterized protei 94.7 8.1 0.00018 42.4 31.3 55 548-602 142-196 (499)
355 PLN03071 GTP-binding nuclear p 94.7 0.05 1.1E-06 55.9 5.7 60 72-139 14-73 (219)
356 PRK10218 GTP-binding protein; 94.7 0.12 2.7E-06 61.0 9.6 69 70-141 4-81 (607)
357 PRK09435 membrane ATPase/prote 94.7 0.059 1.3E-06 59.0 6.5 51 40-93 25-78 (332)
358 PF05701 WEMBL: Weak chloropla 94.7 11 0.00025 44.0 44.3 25 628-652 239-263 (522)
359 PF09789 DUF2353: Uncharacteri 94.7 3.9 8.5E-05 44.3 20.0 40 552-591 11-50 (319)
360 cd04134 Rho3 Rho3 subfamily. 94.7 0.053 1.1E-06 54.1 5.7 57 74-139 3-59 (189)
361 TIGR00491 aIF-2 translation in 94.7 0.093 2E-06 61.8 8.5 23 73-95 6-28 (590)
362 cd04161 Arl2l1_Arl13_like Arl2 94.7 0.053 1.1E-06 52.9 5.5 52 74-138 2-53 (167)
363 cd04120 Rab12 Rab12 subfamily. 94.7 0.056 1.2E-06 54.9 5.8 58 74-139 3-60 (202)
364 cd04151 Arl1 Arl1 subfamily. 94.7 0.076 1.6E-06 50.9 6.5 53 74-139 2-54 (158)
365 PF06785 UPF0242: Uncharacteri 94.6 2.6 5.7E-05 45.2 17.9 25 645-669 201-225 (401)
366 cd04130 Wrch_1 Wrch-1 subfamil 94.6 0.058 1.2E-06 52.7 5.7 57 74-139 3-59 (173)
367 PRK09518 bifunctional cytidyla 94.6 0.053 1.1E-06 65.6 6.4 27 69-95 273-299 (712)
368 PF10168 Nup88: Nuclear pore c 94.6 3.4 7.3E-05 50.0 21.4 30 686-715 686-715 (717)
369 KOG4593 Mitotic checkpoint pro 94.6 13 0.00027 44.0 31.3 8 703-710 286-293 (716)
370 PF00025 Arf: ADP-ribosylation 94.6 0.13 2.9E-06 50.7 8.2 56 70-138 13-68 (175)
371 PRK09866 hypothetical protein; 94.6 0.065 1.4E-06 62.6 6.6 57 71-138 69-127 (741)
372 cd04129 Rho2 Rho2 subfamily. 94.6 0.075 1.6E-06 52.9 6.4 58 74-140 4-61 (187)
373 PF14915 CCDC144C: CCDC144C pr 94.6 7.6 0.00017 41.4 27.3 75 524-601 5-79 (305)
374 cd01871 Rac1_like Rac1-like su 94.5 0.069 1.5E-06 52.6 5.9 57 74-139 4-60 (174)
375 COG1160 Predicted GTPases [Gen 94.5 0.16 3.4E-06 57.0 9.2 101 71-182 178-286 (444)
376 PF09728 Taxilin: Myosin-like 94.5 9 0.0002 41.7 40.1 161 516-693 133-305 (309)
377 PF09744 Jnk-SapK_ap_N: JNK_SA 94.4 2.1 4.6E-05 41.8 15.8 69 607-675 86-154 (158)
378 PF04880 NUDE_C: NUDE protein, 94.4 0.051 1.1E-06 53.2 4.5 46 647-697 2-47 (166)
379 COG1340 Uncharacterized archae 94.4 8.6 0.00019 41.1 33.0 171 547-718 52-247 (294)
380 PRK05433 GTP-binding protein L 94.4 0.11 2.4E-06 61.5 8.2 103 71-178 7-119 (600)
381 COG0218 Predicted GTPase [Gene 94.4 0.25 5.4E-06 49.8 9.4 102 70-182 23-132 (200)
382 cd01888 eIF2_gamma eIF2-gamma 94.3 0.14 3E-06 51.9 7.8 22 73-94 2-23 (203)
383 TIGR01010 BexC_CtrB_KpsE polys 94.3 3.1 6.7E-05 46.1 19.2 31 517-547 169-199 (362)
384 cd04102 RabL3 RabL3 (Rab-like3 94.3 0.091 2E-06 53.5 6.4 61 74-139 3-65 (202)
385 smart00787 Spc7 Spc7 kinetocho 94.3 9.9 0.00021 41.4 26.9 13 645-657 271-283 (312)
386 PTZ00133 ADP-ribosylation fact 94.3 0.061 1.3E-06 53.4 5.0 53 74-139 20-72 (182)
387 PF04111 APG6: Autophagy prote 94.2 0.75 1.6E-05 50.1 13.6 82 512-598 10-91 (314)
388 COG3842 PotA ABC-type spermidi 94.2 0.051 1.1E-06 59.6 4.7 52 72-133 32-84 (352)
389 PRK12736 elongation factor Tu; 94.2 0.11 2.5E-06 58.3 7.6 104 69-180 10-122 (394)
390 cd04121 Rab40 Rab40 subfamily. 94.2 0.086 1.9E-06 53.0 5.9 58 74-139 9-66 (189)
391 cd03268 ABC_BcrA_bacitracin_re 94.2 0.052 1.1E-06 55.0 4.4 24 72-95 27-50 (208)
392 cd03296 ABC_CysA_sulfate_impor 94.2 0.073 1.6E-06 55.2 5.6 23 73-95 30-52 (239)
393 cd01874 Cdc42 Cdc42 subfamily. 94.2 0.091 2E-06 51.8 6.0 57 74-139 4-60 (175)
394 cd03301 ABC_MalK_N The N-termi 94.2 0.075 1.6E-06 54.0 5.5 23 73-95 28-50 (213)
395 COG1120 FepC ABC-type cobalami 94.2 0.049 1.1E-06 57.3 4.1 23 73-95 30-52 (258)
396 PRK12735 elongation factor Tu; 94.1 0.13 2.9E-06 57.7 7.9 26 69-94 10-35 (396)
397 COG3883 Uncharacterized protei 94.1 9.1 0.0002 40.4 26.1 28 563-590 65-92 (265)
398 COG1100 GTPase SAR1 and relate 94.1 0.088 1.9E-06 53.3 5.8 62 72-141 6-67 (219)
399 TIGR02977 phageshock_pspA phag 94.1 8.2 0.00018 39.7 25.3 98 505-602 32-130 (219)
400 PF05911 DUF869: Plant protein 94.0 19 0.00041 43.8 26.9 15 458-472 534-548 (769)
401 TIGR03185 DNA_S_dndD DNA sulfu 94.0 18 0.00039 43.5 29.9 52 550-601 421-472 (650)
402 TIGR03522 GldA_ABC_ATP gliding 94.0 0.051 1.1E-06 58.7 4.1 36 73-118 30-66 (301)
403 PF13207 AAA_17: AAA domain; P 94.0 0.038 8.3E-07 50.6 2.7 22 73-94 1-22 (121)
404 TIGR01425 SRP54_euk signal rec 94.0 0.049 1.1E-06 61.5 4.0 23 70-92 99-121 (429)
405 KOG0976 Rho/Rac1-interacting s 94.0 18 0.00039 43.3 41.0 30 632-661 338-367 (1265)
406 cd04150 Arf1_5_like Arf1-Arf5- 94.0 0.13 2.8E-06 49.7 6.5 53 74-139 3-55 (159)
407 COG2262 HflX GTPases [General 93.9 0.08 1.7E-06 58.5 5.3 56 69-138 190-250 (411)
408 PF05557 MAD: Mitotic checkpoi 93.9 0.016 3.5E-07 70.1 0.0 82 513-601 63-144 (722)
409 cd00071 GMPK Guanosine monopho 93.9 0.046 1E-06 52.0 3.1 22 73-94 1-22 (137)
410 PF04012 PspA_IM30: PspA/IM30 93.9 8.8 0.00019 39.4 20.6 19 565-583 52-70 (221)
411 PRK14250 phosphate ABC transpo 93.9 0.057 1.2E-06 56.2 4.0 23 73-95 31-53 (241)
412 PF00005 ABC_tran: ABC transpo 93.8 0.044 9.6E-07 51.3 2.8 23 73-95 13-35 (137)
413 smart00177 ARF ARF-like small 93.8 0.099 2.1E-06 51.4 5.3 54 73-139 15-68 (175)
414 PF15397 DUF4618: Domain of un 93.7 11 0.00023 39.8 30.4 58 669-727 174-231 (258)
415 PF10186 Atg14: UV radiation r 93.7 10 0.00022 40.5 21.1 77 579-655 21-101 (302)
416 TIGR00475 selB selenocysteine- 93.7 0.18 4E-06 59.5 8.2 23 73-95 2-24 (581)
417 PLN03229 acetyl-coenzyme A car 93.7 13 0.00028 44.5 22.9 80 629-717 651-730 (762)
418 PF06785 UPF0242: Uncharacteri 93.6 12 0.00027 40.3 22.2 84 546-629 130-213 (401)
419 COG1163 DRG Predicted GTPase [ 93.6 0.11 2.4E-06 55.8 5.6 57 71-138 63-120 (365)
420 PLN02318 phosphoribulokinase/u 93.6 0.074 1.6E-06 61.8 4.6 43 52-94 46-88 (656)
421 KOG0410 Predicted GTP binding 93.6 0.057 1.2E-06 57.8 3.4 58 68-139 175-237 (410)
422 TIGR00484 EF-G translation elo 93.6 0.29 6.3E-06 59.0 9.9 26 69-94 8-33 (689)
423 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.5 0.12 2.6E-06 53.3 5.6 56 74-139 4-60 (222)
424 TIGR00235 udk uridine kinase. 93.4 0.061 1.3E-06 54.7 3.3 28 68-95 3-30 (207)
425 PF09789 DUF2353: Uncharacteri 93.4 14 0.0003 40.2 23.6 156 507-662 19-178 (319)
426 PRK01889 GTPase RsgA; Reviewed 93.4 0.047 1E-06 60.5 2.5 24 72-95 196-219 (356)
427 PRK13638 cbiO cobalt transport 93.3 0.078 1.7E-06 56.3 4.0 23 73-95 29-51 (271)
428 PRK05506 bifunctional sulfate 93.3 0.11 2.5E-06 61.9 5.8 26 69-95 23-48 (632)
429 KOG0086 GTPase Rab4, small G p 93.3 0.11 2.5E-06 49.5 4.5 58 74-139 12-69 (214)
430 PRK12317 elongation factor 1-a 93.3 0.33 7.1E-06 55.1 9.2 27 69-95 4-30 (425)
431 TIGR01288 nodI ATP-binding ABC 93.3 0.083 1.8E-06 57.1 4.1 24 72-95 31-54 (303)
432 cd04103 Centaurin_gamma Centau 93.2 0.17 3.7E-06 49.0 6.0 56 74-139 3-58 (158)
433 cd04126 Rab20 Rab20 subfamily. 93.2 0.15 3.2E-06 52.6 5.7 53 74-139 3-55 (220)
434 PLN03126 Elongation factor Tu; 93.2 0.27 5.9E-06 56.6 8.4 104 67-178 77-189 (478)
435 PRK00300 gmk guanylate kinase; 93.2 0.076 1.6E-06 53.6 3.4 27 70-96 4-30 (205)
436 COG1126 GlnQ ABC-type polar am 93.2 0.068 1.5E-06 54.4 3.0 32 63-94 17-51 (240)
437 PRK09493 glnQ glutamine ABC tr 93.1 0.092 2E-06 54.5 4.1 24 72-95 28-51 (240)
438 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 93.1 0.16 3.5E-06 52.8 5.8 58 73-139 15-72 (232)
439 TIGR01277 thiQ thiamine ABC tr 93.1 0.14 3.1E-06 52.1 5.3 23 73-95 26-48 (213)
440 cd03261 ABC_Org_Solvent_Resist 93.0 0.07 1.5E-06 55.2 3.0 23 73-95 28-50 (235)
441 COG1842 PspA Phage shock prote 93.0 13 0.00027 38.6 19.4 89 632-720 53-141 (225)
442 PRK13644 cbiO cobalt transport 93.0 0.093 2E-06 55.8 4.0 23 73-95 30-52 (274)
443 PF10168 Nup88: Nuclear pore c 93.0 4.7 0.0001 48.8 18.6 7 70-76 106-112 (717)
444 COG5185 HEC1 Protein involved 93.0 19 0.00041 40.6 43.3 113 613-725 490-620 (622)
445 COG0396 sufC Cysteine desulfur 93.0 0.09 2E-06 54.0 3.6 35 61-95 17-54 (251)
446 PRK00049 elongation factor Tu; 93.0 0.25 5.5E-06 55.5 7.6 26 69-94 10-35 (396)
447 PRK10418 nikD nickel transport 92.9 0.15 3.3E-06 53.5 5.4 23 73-95 31-53 (254)
448 COG1134 TagH ABC-type polysacc 92.9 0.086 1.9E-06 54.6 3.3 23 73-95 55-77 (249)
449 TIGR00487 IF-2 translation ini 92.9 0.35 7.6E-06 57.1 8.9 60 72-140 88-147 (587)
450 PRK05306 infB translation init 92.9 0.37 8.1E-06 58.5 9.3 90 72-178 291-382 (787)
451 PF09755 DUF2046: Uncharacteri 92.8 16 0.00035 39.4 26.8 106 514-633 23-129 (310)
452 PF15619 Lebercilin: Ciliary p 92.8 12 0.00026 37.9 25.2 52 674-725 139-190 (194)
453 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 92.8 0.2 4.3E-06 50.0 5.7 57 74-139 8-64 (182)
454 TIGR01166 cbiO cobalt transpor 92.7 0.083 1.8E-06 52.8 3.0 23 73-95 20-42 (190)
455 TIGR00960 3a0501s02 Type II (G 92.7 0.082 1.8E-06 53.9 3.0 23 73-95 31-53 (216)
456 KOG0979 Structural maintenance 92.7 32 0.00069 42.4 29.8 18 75-92 46-63 (1072)
457 cd03225 ABC_cobalt_CbiO_domain 92.7 0.084 1.8E-06 53.6 3.0 24 72-95 28-51 (211)
458 PF13555 AAA_29: P-loop contai 92.6 0.1 2.2E-06 42.7 2.8 20 73-92 25-44 (62)
459 cd03222 ABC_RNaseL_inhibitor T 92.6 0.082 1.8E-06 52.6 2.7 23 73-95 27-49 (177)
460 PF09744 Jnk-SapK_ap_N: JNK_SA 92.6 11 0.00024 36.9 18.7 74 513-586 52-125 (158)
461 TIGR01394 TypA_BipA GTP-bindin 92.6 0.22 4.8E-06 58.8 6.7 65 73-140 3-76 (594)
462 TIGR00634 recN DNA repair prot 92.6 27 0.00058 41.3 27.8 21 72-92 23-43 (563)
463 TIGR00503 prfC peptide chain r 92.5 0.33 7.1E-06 56.7 7.9 95 70-172 10-119 (527)
464 cd03226 ABC_cobalt_CbiO_domain 92.5 0.091 2E-06 53.1 3.0 23 73-95 28-50 (205)
465 COG1341 Predicted GTPase or GT 92.5 0.37 8E-06 53.4 7.7 111 68-179 70-193 (398)
466 cd03263 ABC_subfamily_A The AB 92.5 0.092 2E-06 53.6 3.0 23 73-95 30-52 (220)
467 cd03265 ABC_DrrA DrrA is the A 92.5 0.093 2E-06 53.7 3.0 24 72-95 27-50 (220)
468 COG3172 NadR Predicted ATPase/ 92.5 0.085 1.8E-06 51.2 2.4 24 71-94 8-31 (187)
469 PF04156 IncA: IncA protein; 92.5 8.4 0.00018 38.5 17.1 8 567-574 105-112 (191)
470 cd02023 UMPK Uridine monophosp 92.5 0.068 1.5E-06 53.8 2.0 23 73-95 1-23 (198)
471 cd03269 ABC_putative_ATPase Th 92.4 0.095 2.1E-06 53.2 3.0 23 73-95 28-50 (210)
472 COG0419 SbcC ATPase involved i 92.4 37 0.0008 42.6 36.1 21 72-92 26-46 (908)
473 PRK10512 selenocysteinyl-tRNA- 92.4 0.38 8.3E-06 57.1 8.4 22 73-94 2-23 (614)
474 PRK05124 cysN sulfate adenylyl 92.4 0.48 1E-05 54.6 9.0 27 69-95 25-51 (474)
475 cd03224 ABC_TM1139_LivF_branch 92.4 0.094 2E-06 53.6 3.0 24 72-95 27-50 (222)
476 PLN03127 Elongation factor Tu; 92.4 0.56 1.2E-05 53.6 9.4 27 68-94 58-84 (447)
477 PLN00223 ADP-ribosylation fact 92.4 0.2 4.4E-06 49.7 5.2 52 74-138 20-71 (181)
478 COG3839 MalK ABC-type sugar tr 92.3 0.19 4.1E-06 55.0 5.3 23 73-95 31-53 (338)
479 cd01875 RhoG RhoG subfamily. 92.3 0.25 5.5E-06 49.4 5.9 57 74-139 6-62 (191)
480 TIGR02673 FtsE cell division A 92.3 0.099 2.2E-06 53.2 3.0 23 73-95 30-52 (214)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.3 0.099 2.1E-06 53.3 3.0 23 73-95 32-54 (218)
482 TIGR02211 LolD_lipo_ex lipopro 92.3 0.1 2.2E-06 53.4 3.0 23 73-95 33-55 (221)
483 cd03264 ABC_drug_resistance_li 92.3 0.092 2E-06 53.3 2.7 23 73-95 27-49 (211)
484 PF00485 PRK: Phosphoribulokin 92.3 0.092 2E-06 52.8 2.6 21 73-93 1-21 (194)
485 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.3 0.11 2.3E-06 49.8 2.9 24 72-95 27-50 (144)
486 cd03292 ABC_FtsE_transporter F 92.3 0.1 2.2E-06 53.0 3.0 23 73-95 29-51 (214)
487 PRK09452 potA putrescine/sperm 92.3 0.16 3.5E-06 56.6 4.8 23 73-95 42-64 (375)
488 cd03260 ABC_PstB_phosphate_tra 92.2 0.098 2.1E-06 53.8 2.9 23 73-95 28-50 (227)
489 PRK12727 flagellar biosynthesi 92.2 0.12 2.6E-06 59.6 3.8 22 72-93 351-372 (559)
490 PLN02939 transferase, transfer 92.2 35 0.00077 42.5 24.6 100 625-728 301-405 (977)
491 cd03235 ABC_Metallic_Cations A 92.2 0.1 2.2E-06 53.1 2.9 23 73-95 27-49 (213)
492 KOG0804 Cytoplasmic Zn-finger 92.2 6.5 0.00014 44.0 16.7 116 514-629 328-447 (493)
493 PF13514 AAA_27: AAA domain 92.2 44 0.00095 42.9 31.3 25 76-100 1-25 (1111)
494 cd03216 ABC_Carb_Monos_I This 92.2 0.11 2.4E-06 50.8 3.0 23 73-95 28-50 (163)
495 cd02025 PanK Pantothenate kina 92.2 0.073 1.6E-06 54.9 1.9 23 73-95 1-23 (220)
496 TIGR02982 heterocyst_DevA ABC 92.2 0.15 3.2E-06 52.3 4.1 24 72-95 32-55 (220)
497 TIGR02315 ABC_phnC phosphonate 92.2 0.1 2.2E-06 54.2 3.0 24 72-95 29-52 (243)
498 cd03238 ABC_UvrA The excision 92.2 0.1 2.2E-06 51.9 2.8 21 73-93 23-43 (176)
499 TIGR00485 EF-Tu translation el 92.2 0.36 7.8E-06 54.2 7.5 109 68-184 9-126 (394)
500 PF12325 TMF_TATA_bd: TATA ele 92.2 9.3 0.0002 35.6 15.5 103 504-607 16-118 (120)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=2e-65 Score=537.19 Aligned_cols=259 Identities=47% Similarity=0.868 Sum_probs=227.9
Q ss_pred CCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEE
Q 004698 51 KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL 130 (736)
Q Consensus 51 ~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v 130 (736)
+++|.||++|+++|..++.||+||||+|+||||||||||+|+|...||+||++++|||+|||||+.|. +.|++++|
T Consensus 1 ~~~~~~~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~----~~~~~~~v 76 (260)
T PF02263_consen 1 DNKLELNEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPL----PDGEKVAV 76 (260)
T ss_dssp TTEEEE-HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-----TTSTCEEE
T ss_pred CCeEEECHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeeccc----ccccceeE
Confidence 47899999999999989999999999999999999999999999999999999999999999999994 45788999
Q ss_pred EEeecCCCcccC-CCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeE
Q 004698 131 LLLDSEGIDAYD-QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIF 209 (736)
Q Consensus 131 ~llDteG~~~~~-~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f 209 (736)
+||||||++++. .+.++|++||+|++||||++|||++|.|++++|++|+++++++++|+++... .....++..+||+|
T Consensus 77 ~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l 155 (260)
T PF02263_consen 77 VLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSL 155 (260)
T ss_dssp EEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEE
T ss_pred EEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHH
Confidence 999999998854 4567899999999999999999999999999999999999999999876321 11223456789999
Q ss_pred EEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCC
Q 004698 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDR 289 (736)
Q Consensus 210 ~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~ 289 (736)
+||||||++++..+|+.+|+++||+++|+...|.++.+..+|.+|++|++||++++||+||||+.++..++++++++.++
T Consensus 156 ~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~ 235 (260)
T PF02263_consen 156 VWLVRDFSLELEDDGGKITPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDD 235 (260)
T ss_dssp EEEEECE-SCTCCTTECHHHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGG
T ss_pred HHHHhhccchhhhccCCCCHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhh
Confidence 99999999998888999999999999999888888888899999999999999999999999999999889999999999
Q ss_pred CChHHHHHHHHHHHHHhccCCcccc
Q 004698 290 LRPEFRAGLDALTKFVFERTRPKQV 314 (736)
Q Consensus 290 l~~eF~~~l~~l~~~i~~~~~pK~~ 314 (736)
|+|+|+++++.||++|++...+|++
T Consensus 236 L~~eF~~~l~~l~~~i~~~~~~k~~ 260 (260)
T PF02263_consen 236 LDPEFVEQLDELVKYIFSSAKVKTL 260 (260)
T ss_dssp S-HHHHHHHHHHHHHHHCCT---BE
T ss_pred CCHHHHHHHHHHHHHHhccCCcccC
Confidence 9999999999999999998888763
No 2
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=419.78 Aligned_cols=468 Identities=23% Similarity=0.291 Sum_probs=405.6
Q ss_pred CeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccc
Q 004698 42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121 (736)
Q Consensus 42 pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~ 121 (736)
|.+ ++.+.+|+|.+|| |+.+|+.+.+||+||+|+|.||+||||+||.++|++.||+++.++.|||+||||||.|++
T Consensus 5 p~~-~~~~~~~~l~~~p-a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~-- 80 (552)
T KOG2037|consen 5 PML-LYENENGQLKVNP-ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHG-- 80 (552)
T ss_pred chh-hhhccccccccCc-chhHHhhccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecC--
Confidence 344 4457789999999 999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCC-----C
Q 004698 122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGG-----K 196 (736)
Q Consensus 122 ~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~-----~ 196 (736)
++..++++|+||||+ ..+...+.|||+++.|+||+++||+.|.|+..+|.++++|+++++.+++.+... -
T Consensus 81 --k~~~~~l~Lld~eg~---~~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~ 155 (552)
T KOG2037|consen 81 --KSFLLNLVLLDTEGL---KGDNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAF 155 (552)
T ss_pred --Cccchhhhhhccccc---cCCccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccc
Confidence 477799999999998 345677999999999999999999999999999999999999999888766421 1
Q ss_pred CCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcCh
Q 004698 197 TTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 276 (736)
Q Consensus 197 ~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~ 276 (736)
++..++..+||.|.|..|||++++..+++++++++|++..|....| |
T Consensus 156 ~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g-----------~---------------------- 202 (552)
T KOG2037|consen 156 DDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYG-----------R---------------------- 202 (552)
T ss_pred cccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHH-----------H----------------------
Confidence 3455677899999999999999999999999999999988875433 1
Q ss_pred hhhhcccCCCcCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcC-CCCCccchHHHHHHHH
Q 004698 277 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNG-AVPTISSSWQSVEEAE 354 (736)
Q Consensus 277 ~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltg~~l~~l~~~yv~ain~g-~vP~i~s~~~~~~e~~ 354 (736)
..+.++...|.++|.+.|+.+...+|.+++.....|.+ +|..++|+.+..|...|+.+++.+ .+||..++..+++.++
T Consensus 203 ~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~ 282 (552)
T KOG2037|consen 203 LALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAE 282 (552)
T ss_pred HHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhccc
Confidence 22344445678889999999999999999998889998 678899999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC-C--CC-ChHHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 355 CRRAYDSATETYMSTFDRS-K--PP-EEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVY 430 (736)
Q Consensus 355 ~~~a~~~A~~~Y~~~m~~~-~--p~-~e~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~ 430 (736)
+..+++.+.++|...|.+. . |. ...++...|..+..++...|....|. +..+-|++++-..+..-.. +++.|.
T Consensus 283 n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk--~y~~i~q~~~g~~lp~pks-~l~~~a 359 (552)
T KOG2037|consen 283 NPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFK--AYDKIFQKKLGETLPGPKS-MLKANA 359 (552)
T ss_pred CchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHH--HHHHHhhHhhhhhCcCccc-HHHHHH
Confidence 9999999999999999876 3 32 23678888998888999988888774 6777888888888877666 888998
Q ss_pred HHHHHHHHHHHHH----HHHHHHhh-ccCCCcchhHHHHHHHHHHHHHhccc-CCCchhHHHHHHHH--HhhhhhHHHHH
Q 004698 431 MEADIRCSSAIQS----MERKLRAA-CHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILDLV 502 (736)
Q Consensus 431 ~~s~~~C~~~l~~----le~~l~~~-~~~~~~~~~~~~~~~~~ll~~Y~~~~-~Gp~K~~~L~~fLq--~~~~~~il~~~ 502 (736)
.++...|....+. +.+.+..+ .+..++++..+...+..+...|...+ +|.+..++...|++ ..+...++..+
T Consensus 360 ea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~ 439 (552)
T KOG2037|consen 360 EASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTD 439 (552)
T ss_pred HHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988875 55666667 77888899999999999988888776 66777888999998 47788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK 555 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l 555 (736)
+..++. .+.....|..+++....+..+....-.-...+....+.+++.+...
T Consensus 440 ~~~~~s-~~~~~~~r~~A~a~~~~~~~~~~~~~~~~~~me~~a~~~~~~~~q~ 491 (552)
T KOG2037|consen 440 QALTES-KKLFLAARTPAEAAAKEAILLILSGLEGFIGMEIAARLIEETMKQL 491 (552)
T ss_pred HHHhcc-chhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 8889999999999999988888888887777788778888777765
No 3
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=100.00 E-value=5.6e-45 Score=374.52 Aligned_cols=219 Identities=38% Similarity=0.585 Sum_probs=190.9
Q ss_pred ccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCC
Q 004698 66 LVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (736)
Q Consensus 66 ~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~ 145 (736)
.++.||+||||+|++|+|||||||+|+|..+||+|+++..+||+|||||+.|+.. |.++.|+||||||+++.+++.
T Consensus 2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCc
Confidence 3578999999999999999999999999988999999999999999999999864 456789999999999998888
Q ss_pred -ccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccC
Q 004698 146 -TYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDN 224 (736)
Q Consensus 146 -~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g 224 (736)
.+|++||+|++||||++|||+++.+++.+++.|+++++++... ++.........++|.|+||||||++.....+
T Consensus 78 ~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~ 152 (224)
T cd01851 78 FEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEV-----LGLAGLTEFEKPKPLLLFVVRDFSLDTPLEN 152 (224)
T ss_pred hhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHh-----hhhhhhhhcccCCCceEEEEecCcCCccccc
Confidence 8999999999999999999999999999999999999886211 1111223456789999999999999877655
Q ss_pred ccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhC--CCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHH
Q 004698 225 RKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALT 302 (736)
Q Consensus 225 ~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F--~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~ 302 (736)
..++ .+.....+..|.+|.+|+.+| ++++||++|+|+.+...+++ .++..+++|+|.++++.|+
T Consensus 153 ~~~~------------~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~ 218 (224)
T cd01851 153 LDIT------------EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELR 218 (224)
T ss_pred cccc------------cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHH
Confidence 4443 344556788999999999999 99999999999999888877 6889999999999999999
Q ss_pred HHHhc
Q 004698 303 KFVFE 307 (736)
Q Consensus 303 ~~i~~ 307 (736)
+++++
T Consensus 219 ~~~~~ 223 (224)
T cd01851 219 DRFFS 223 (224)
T ss_pred HHhcC
Confidence 99875
No 4
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=1e-35 Score=318.30 Aligned_cols=243 Identities=32% Similarity=0.478 Sum_probs=214.2
Q ss_pred CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CCC-hHHHHHHHHHHHHH
Q 004698 315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-K-PPE-EVALGEAHEAAVQK 391 (736)
Q Consensus 315 ~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~-~-p~~-e~~L~~~h~~~~~~ 391 (736)
||.+|||++|++|+++||+|||+|.||||+|+|.+|++++|.+|++.|+.+|...|+.. . |.+ .++|...|..|..+
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999986 3 444 58999999999999
Q ss_pred HHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHHHHHH
Q 004698 392 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD 467 (736)
Q Consensus 392 Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~~~ 467 (736)
|+.+|++++||+ ..++|+++|...|.+.|++|++.|+.+|..+|+++|+. |+++|+.++|.++|+|+.|++.++
T Consensus 81 A~~~F~~~s~~d--~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~ 158 (297)
T PF02841_consen 81 ALEVFMKRSFGD--EDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD 158 (297)
T ss_dssp HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 999999999984 77899999999999999999999999999999999987 999999999999999999999999
Q ss_pred HHHHHHhccc-CCCchhHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698 468 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY 544 (736)
Q Consensus 468 ~ll~~Y~~~~-~Gp~K~~~L~~fLq~--~~~~~il~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~ 544 (736)
.++.+|+..| +||....+|..||+. .+.+.|+++++.+++. ++++...+.+.+.++.+...+...++..++.+.+.
T Consensus 159 ~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~-ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~ 237 (297)
T PF02841_consen 159 ELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEK-EKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ 237 (297)
T ss_dssp HHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 788888889999984 5789999999999988 99999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHH
Q 004698 545 LKRYDDAINDKKKLAD 560 (736)
Q Consensus 545 ~k~~e~~In~lkk~~e 560 (736)
.++|+++++++...++
T Consensus 238 ~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 238 ERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999988754443
No 5
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=288.84 Aligned_cols=382 Identities=18% Similarity=0.185 Sum_probs=312.7
Q ss_pred CCCCCeeEEEe--CCCCceeeCHHHHHHhh----ccCCCEEEEEeeCCCCCChhHHHHHHhCC-----------------
Q 004698 38 GPARPIRLVYC--DEKGKFRMDPEAVAALQ----LVKEPIGVVSVCGRARQGKSFILNQLLGR----------------- 94 (736)
Q Consensus 38 ~~~~pi~Lv~~--d~~~~l~l~~eAl~~L~----~i~~~v~vVsv~G~~rtGKS~LlN~l~~~----------------- 94 (736)
..|.||+.|.. ..++.|.+|+.|.+.+- ..+.||++++++|+++.||||++|++|-.
T Consensus 29 ~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~ 108 (552)
T KOG2037|consen 29 KQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFAL 108 (552)
T ss_pred cCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCccchhhhhcc
Confidence 56777777766 56688999999999874 24689999999999999999999998732
Q ss_pred --CCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698 95 --SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (736)
Q Consensus 95 --~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (736)
..||.|..+..+.|.|||||..||....++|.++++.++||+|..+...+.......|++++++||+.|||....|++
T Consensus 109 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~e 188 (552)
T KOG2037|consen 109 APLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQE 188 (552)
T ss_pred chhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCH
Confidence 246888888899999999999999888899999999999999976555555667889999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhH
Q 004698 173 SAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNE 252 (736)
Q Consensus 173 ~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ 252 (736)
+++++|++++++.....-. .+...+-.+.+++|||+.+....-..-+.+..|.+.|. ..++..++...
T Consensus 189 d~l~~l~l~~~~g~~~l~~---------~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~---v~~~~~~el~~ 256 (552)
T KOG2037|consen 189 DDLQHLSLFTEYGRLALAH---------LFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLK---VNGPQLEELVQ 256 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHhhhhhhHHHHHhcccccccccee---ecccchHHHHH
Confidence 9999999999997743210 11222336789999999876542111234455666654 34456788888
Q ss_pred HHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHh--ccCCccccCCcccchhhHHHHHHH
Q 004698 253 IRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRPKQVGATVLTGPVLIGITES 330 (736)
Q Consensus 253 ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~--~~~~pK~~~g~~ltg~~l~~l~~~ 330 (736)
+|++++.||-++.||.+|+|+.....++..++ ...++.+.|..++...+.... ....+|.++|..+|+..+.++++.
T Consensus 257 ~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk~ 335 (552)
T KOG2037|consen 257 LRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFKA 335 (552)
T ss_pred HHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHHH
Confidence 99999999999999999999976554444432 556778899999875555444 357888899999999999999999
Q ss_pred HHHHHh---cCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCChHHHHHHHHHHHHHHHHHhhhc-c-c
Q 004698 331 YLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----PPEEVALGEAHEAAVQKALAVYNAG-A-V 401 (736)
Q Consensus 331 yv~ain---~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~~----p~~e~~L~~~h~~~~~~Al~~F~~~-s-~ 401 (736)
|...+. ...+|.+.++..+.+++.+.+++..|...|...|++.+ ...+..|...|...+..|+.+|... + +
T Consensus 336 y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~i 415 (552)
T KOG2037|consen 336 YDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGI 415 (552)
T ss_pred HHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999 56899999999999999999999999999999998864 3467899999999999999999886 4 8
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 402 GVGLARKKYEGLLQKFFRKAFEDHKKNVYME 432 (736)
Q Consensus 402 g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~ 432 (736)
|..++.+.|.+.|+..+...+..++..+...
T Consensus 416 g~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~ 446 (552)
T KOG2037|consen 416 GAEEVCQRYLQSLESVEEELLQTDQALTESK 446 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999988888888777766443
No 6
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=99.96 E-value=9.7e-27 Score=274.87 Aligned_cols=356 Identities=19% Similarity=0.263 Sum_probs=252.7
Q ss_pred eCCCCCChhHHHHHHhCCCCcccccC--CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC----CccchH
Q 004698 77 CGRARQGKSFILNQLLGRSSGFQVAS--THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT----GTYSTQ 150 (736)
Q Consensus 77 ~G~~rtGKS~LlN~l~~~~~gF~~~~--~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~----~~~d~~ 150 (736)
+|+++||||||||.|||++ |.+.+ +.+.||+||||...+... ...-.+++||+||.++.+++ .++.+.
T Consensus 1 ~g~qssgkstlln~lf~t~--f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~d~eg~d~~er~~~~~fe~~~a 74 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQ--FDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVLDVEGTDGRERGEDQDFERKSA 74 (742)
T ss_pred CCCCCCcHHHHHHHHHCCC--ccccccccccccchhhHHHhccccc----cCCCceEEEeCCCCCchhhccccchHHHHH
Confidence 5999999999999999998 99976 467899999998765421 11246889999999988764 345788
Q ss_pred HHHHhhhccceEEEccC----CCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCcc
Q 004698 151 IFSLAVLLSSMFIYNQM----GGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRK 226 (736)
Q Consensus 151 IFaLa~LLSS~~IyN~~----g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~ 226 (736)
+||||+ |.++|.|++ |..+.+++.-|..|.++.-.+..++ . -....+.++||||||+-.-..+.-.
T Consensus 75 lf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~--~------~~~~k~~llfviRD~~~~tp~e~l~ 144 (742)
T PF05879_consen 75 LFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKS--K------SNDRKTLLLFVIRDHTGVTPLENLE 144 (742)
T ss_pred HHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhc--c------cCCCCceEEEEEeeCCCCCcHHHHH
Confidence 999988 999999985 8888888999999988854443222 1 0124678999999998411001101
Q ss_pred CChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHh
Q 004698 227 ITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF 306 (736)
Q Consensus 227 ~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~ 306 (736)
-|-.+.|++++.....+.. -.+ ..|..|| ++..++|||.... .++|.+++..|++++.
T Consensus 145 ~~l~~dl~~iW~~i~kP~~---~~~---~~~~d~F-d~~f~~LpH~~~~---------------~e~F~~~v~~Lr~rf~ 202 (742)
T PF05879_consen 145 ETLREDLEKIWDSISKPEG---FEN---SSLSDFF-DLEFTALPHKILQ---------------PEKFNEDVAKLRQRFV 202 (742)
T ss_pred HHHHHHHHHHHHhccCccc---ccC---CChhhee-eeeeeccCchhhh---------------HHHHHHHHHHHHHHHh
Confidence 1233444455544322111 001 3588999 8999999996543 3579999999999998
Q ss_pred cc-------CCccccCCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC-----
Q 004698 307 ER-------TRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----- 374 (736)
Q Consensus 307 ~~-------~~pK~~~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~~----- 374 (736)
.. .+|. ..+.|++.+|..|++..|+.|.++.-..+++.-..||+..|.+++.+++..|...+....
T Consensus 203 ~~~~~~~~~~~~~--y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~ 280 (742)
T PF05879_consen 203 DSKNIEDGLFKPE--YHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSE 280 (742)
T ss_pred ccCcCCCCCCchh--hcCCCChHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 75 2222 334678888999999999999999777888888999999999999999999998754311
Q ss_pred ------CCChHHHHHHHHHHHHHHHHHhhhcccC-ChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004698 375 ------PPEEVALGEAHEAAVQKALAVYNAGAVG-VGLARKKYEGLLQKFFRKAFED-HKKNVYMEADIRCSSAIQSMER 446 (736)
Q Consensus 375 ------p~~e~~L~~~h~~~~~~Al~~F~~~s~g-~~~~~~~~~~~L~~~i~~~~e~-~~~~n~~~s~~~C~~~l~~le~ 446 (736)
...-..|........++|++.|+..+-. ...++.+.+.+|...|...+.. |..+ -...|..++..+.+
T Consensus 281 l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~q----L~~L~~~~l~~Fk~ 356 (742)
T PF05879_consen 281 LEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQ----LKHLRKKLLESFKE 356 (742)
T ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 2344689999999999999999987522 2467777788888877776665 3322 23456777777777
Q ss_pred HHHhhccCCCcchhHH-HHHHHHHHHHHhccc
Q 004698 447 KLRAACHSSDASIDNV-VKVLDGLISEYETSC 477 (736)
Q Consensus 447 ~l~~~~~~~~~~~~~~-~~~~~~ll~~Y~~~~ 477 (736)
.|...... +.+|... ......++..|+..|
T Consensus 357 ~l~~~lk~-~~~Fa~~v~~~~~~~~~~F~~~a 387 (742)
T PF05879_consen 357 ALSSALKS-GEDFAEAVRECKQSALEEFEESA 387 (742)
T ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77643322 2344433 344556666676643
No 7
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=99.95 E-value=1.2e-24 Score=235.82 Aligned_cols=306 Identities=22% Similarity=0.351 Sum_probs=218.1
Q ss_pred CCCCeeEEEeCCCCceeeCHHHHHHhhc-c-----CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccc
Q 004698 39 PARPIRLVYCDEKGKFRMDPEAVAALQL-V-----KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTK 109 (736)
Q Consensus 39 ~~~pi~Lv~~d~~~~l~l~~eAl~~L~~-i-----~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~ 109 (736)
.....||| |+++.|. ..+++.+.+ + .-.+.||||+|++.||||||||.|||++ |.... +.+.+||
T Consensus 3 dr~stQlI--De~keFn--~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTn--F~~MDA~~gRqQTTK 76 (772)
T KOG2203|consen 3 DRCSTQLI--DEEKEFN--VSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTN--FREMDAFKGRQQTTK 76 (772)
T ss_pred Ccccceee--ccccccc--hhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccC--hHHHHhhhccccccc
Confidence 34568899 6666665 667777754 2 3589999999999999999999999998 77654 5778999
Q ss_pred eEEeeccccccccCCCCceEEEEeecCCCcccCCCC----ccchHHHHHhhhccceEEEccC----CCCchHHhhhhHHH
Q 004698 110 GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG----TYSTQIFSLAVLLSSMFIYNQM----GGIDESAIDRLSLV 181 (736)
Q Consensus 110 Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~----~~d~~IFaLa~LLSS~~IyN~~----g~i~e~~l~~L~~v 181 (736)
|||+... .|-+..+++||.||.|+.+++. +..+.+||+|+ |.++|.|++ |..+..++-.|..|
T Consensus 77 GIWlar~-------~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTV 147 (772)
T KOG2203|consen 77 GIWLARC-------AGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTV 147 (772)
T ss_pred hhhHHhh-------cCCCCceEEEecccCCcccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHH
Confidence 9999853 2444569999999999877643 45689999998 999999985 66777788889888
Q ss_pred HHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhcc--------ccCCChhhhhhhHH
Q 004698 182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP--------VQGSGRDIAAKNEI 253 (736)
Q Consensus 182 ~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~--------~~g~~~~~~~~n~i 253 (736)
.++. +++.+ .+. -.-.++|||||++. .||-+-|+..|+. .+.+. .. .|
T Consensus 148 feV~--lrLF~--~rk-------~k~~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KPe-~~--e~-- 203 (772)
T KOG2203|consen 148 FEVN--LRLFS--PRK-------NKTLLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKPE-GH--EN-- 203 (772)
T ss_pred HHHH--HHHhC--CCC-------CceEEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCcc-cc--cC--
Confidence 7774 33322 111 02368999999984 4566666655543 22110 01 11
Q ss_pred HHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhcc-CCccccCC---cccchhhHHHHHH
Q 004698 254 RDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITE 329 (736)
Q Consensus 254 r~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~-~~pK~~~g---~~ltg~~l~~l~~ 329 (736)
..|..|| ++..+.|+|-... .+.|.++|..|+++++.+ ..|-.+.| ..++..+|.-|.+
T Consensus 204 -s~l~DfF-dv~~v~Ls~~~~k---------------edqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~ 266 (772)
T KOG2203|consen 204 -SPLNDFF-DVEFVGLSHKELK---------------EDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAE 266 (772)
T ss_pred -Cchhhhh-ceeeeecchHHHH---------------HHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHH
Confidence 3577888 7888888773321 367999999999988876 67766644 4678888999999
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh--ccc---CCCCCh-HHHHHHHHHHHHHHHHHhhhcc
Q 004698 330 SYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMST--FDR---SKPPEE-VALGEAHEAAVQKALAVYNAGA 400 (736)
Q Consensus 330 ~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~--m~~---~~p~~e-~~L~~~h~~~~~~Al~~F~~~s 400 (736)
.+|+.|..|.-..++..-..||...|.++..++++.|... ..+ -++-.. ..|-...-...++++..|+..+
T Consensus 267 qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~l~~kL~~i~e~~lseYD~qA 343 (772)
T KOG2203|consen 267 QIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSGLGKKLSSILEECLSEYDEQA 343 (772)
T ss_pred HHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhHH
Confidence 9999999987666666667899999999999999988642 111 111111 2233444444555667777664
No 8
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=99.31 E-value=2.6e-08 Score=116.42 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHhh-----hhhHHHHHHHHHH---HHHH
Q 004698 440 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSS-----EGPILDLVKRLID---QIGS 511 (736)
Q Consensus 440 ~l~~le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~~Gp~K~~~L~~fLq~~~-----~~~il~~~~~l~~---~i~~ 511 (736)
.+++|-+.|++....++++-+.+....++.+.- .-+..|.--+.|-.-+++.+ .+.|+...+..+. .+++
T Consensus 1472 el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l--~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1472 ELRNLIQQVRDFLTQPDADPDSIEEVAEEVLAL--ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHH
Confidence 344455555555555666666666666666654 23334444444555555433 3455554443333 3445
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD 588 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le 588 (736)
+-...+.+++.++..++.+++.|+++.+++.+++ +.....|...+..++.+.+++...|....++.+++..|...++
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778889999999999999999999888887 5667888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 589 SLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR-------LAAAREQALSAQEEVEEWKRKYGVAV 658 (736)
Q Consensus 589 ~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~-------~~~~~~q~~~~~~E~~e~~~ky~~~~ 658 (736)
.||.+...+...+ ++++..++..+..+++.++.|++.+..+++. ..+++++++.++.|++++----+.-.
T Consensus 1630 ~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1630 ELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877 6788888888999999999999999888877 44566667777766433322111111
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698 659 REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 700 (736)
Q Consensus 659 ~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~ 700 (736)
... -.|+..-..+++.++.++++++.|+.++.+++..|+.+
T Consensus 1710 ~~l-~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1710 DRL-KDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHH-HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 111 11222235556777777777777777777777666543
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.01 E-value=7.5e-06 Score=88.69 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 582 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~ 582 (736)
++.++.+..++..+....+.+..+++.++..++.... ..+..+..+..+++.+++......+|+.++.++.+++.+
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~----~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA----ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 5667777888888888999999999999888887533 346788999999999999999999999999999999999
Q ss_pred HHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHH
Q 004698 583 LSKTVDSLK------------------------NEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAR 637 (736)
Q Consensus 583 L~~~le~lk------------------------~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~ 637 (736)
+...++.-. ..+.+++..|+..+...+.+.+ +|+.++.+++. ......
T Consensus 136 l~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~-------~~~~~~ 208 (312)
T PF00038_consen 136 LKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ-------QSEKSS 208 (312)
T ss_dssp HHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc-------cccccc
Confidence 888766522 4567888999999999998888 99999998888 666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698 638 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT 717 (736)
Q Consensus 638 ~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~ 717 (736)
..+..++.|+.++++.++.+..+. .-+...+...++.+.+++.+.+.-...+...+...+.++..+...+.+..+....
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el-~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAEL-ESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhh-hccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 788888999999999999888888 4455567778888888888888888888888888888888888888777766665
Q ss_pred HHH
Q 004698 718 LRL 720 (736)
Q Consensus 718 ~~~ 720 (736)
|.+
T Consensus 288 Ll~ 290 (312)
T PF00038_consen 288 LLD 290 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.9e-08 Score=104.46 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 41 ~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
++++||. +.| .++..|.++|... ..+.||||+|++++|||+|||.|.+.
T Consensus 163 ~s~~li~--d~g--~~~d~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 163 RSTPLIV--DNG--IFNDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CCcceee--ccc--chhhHHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhcc
Confidence 4566773 234 4558899888766 78999999999999999999999986
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.41 E-value=0.0046 Score=78.43 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChhHHHHH---HhCCC
Q 004698 73 VVSVCGRARQGKSFILNQ---LLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~---l~~~~ 95 (736)
+++|+||.|+|||+||.. ++|..
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCC
Confidence 789999999999999966 55543
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.38 E-value=0.0068 Score=76.98 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.1
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
++.+|+||.|+|||+||..|.
T Consensus 24 ~~~~i~G~NGsGKS~ildAi~ 44 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIGDAIL 44 (1164)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367889999999999999863
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.34 E-value=0.0015 Score=70.85 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584 (736)
Q Consensus 505 l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~ 584 (736)
+....+.++..++..++.+..+...+..+++.....+.+++.+|+...... ..++.++..+.+.++..+.....|.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~----~~le~el~~lrk~ld~~~~~r~~le 123 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER----KDLEEELESLRKDLDEETLARVDLE 123 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhhHhHHH
Confidence 344456678899999999999999999999999999999999999886655 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHH
Q 004698 585 KTVDSLKNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLA----AAREQALSAQEEVEEWK-RKYGVAV 658 (736)
Q Consensus 585 ~~le~lk~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~----~~~~q~~~~~~E~~e~~-~ky~~~~ 658 (736)
.++.+++.++..++..|++.+...+.... ....+++. ....++...+. .+...+...+.++..|- .+++.+.
T Consensus 124 ~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~ 201 (312)
T PF00038_consen 124 NQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR 201 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc
Confidence 99999999999999999998887766542 11111110 11112222222 23334444555544442 2333332
Q ss_pred HHHHH---HHHHH----------HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698 659 REAKA---ALEKA----------AIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVS 725 (736)
Q Consensus 659 ~e~ka---lle~~----------~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~ 725 (736)
..... .+..+ +...+..+...+.+..+|+.++..+......+....+..+...+.++..+..++...
T Consensus 202 ~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 202 QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 22211 11111 133335556666777777777777777777778888888888888888888877665
Q ss_pred hh
Q 004698 726 FF 727 (736)
Q Consensus 726 ~~ 727 (736)
.-
T Consensus 282 ~~ 283 (312)
T PF00038_consen 282 LR 283 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=92.08 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=43.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-..++|+|+|.+.+|||||||+|+|.. .++-+. ++..-+||..- .+..++|+||||+-
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~-----------~~~QiIfvDTPGih 65 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTT-----------DNAQIIFVDTPGIH 65 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEc-----------CCceEEEEeCCCCC
Confidence 357899999999999999999999986 333332 33334677763 13679999999984
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=0.0097 Score=76.62 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.+++|+||.|+|||+|+..|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999983
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.25 E-value=0.0018 Score=75.78 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
++..|+|+.|+|||+||..+.
T Consensus 28 g~~~i~G~NG~GKStll~aI~ 48 (562)
T PHA02562 28 KKTLITGKNGAGKSTMLEALT 48 (562)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999865
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.25 E-value=0.015 Score=69.89 Aligned_cols=111 Identities=26% Similarity=0.335 Sum_probs=64.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 600 KYDQVLTKQKAMEDQVCSEIEVLKSRSTA-------AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 672 (736)
Q Consensus 600 ~yee~~~~~~~~~~~~~~~i~~L~~k~~~-------~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~ 672 (736)
..|..++.+.....++...+++||.++.. +|..+.++..+|.++++.+..+..+|+. .+.++++..+
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~----~~~l~~~r~~-- 1682 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL----VDRLLEKRME-- 1682 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh--
Confidence 33555555555555566666655554432 3344555666666666666555444443 2344444443
Q ss_pred HHhhHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHhhH
Q 004698 673 ERTSKEMQQREDVLREEFSSTLAEKEEE---MKEKATKIEHAEQCLTTL 718 (736)
Q Consensus 673 e~~~e~~~~~~~~l~~e~~~~~~e~~~~---~~~~~~k~~~~~~~~~~~ 718 (736)
....++.|...||++++.++.+++.+ |+++..+|+..++.|-.+
T Consensus 1683 --g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~ 1729 (1758)
T KOG0994|consen 1683 --GSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDK 1729 (1758)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34466777888888888888888777 566666666555444433
No 18
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.23 E-value=0.00031 Score=79.91 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=91.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHH
Q 004698 518 LKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK----TVDSL 590 (736)
Q Consensus 518 ~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~----~le~l 590 (736)
..+..+++++..++.-...++..+.... -+...+|+.+++.+++-..-.++++.++.+|.+++.++.. .+..+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~ 227 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEE 227 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333444444444444433333333332 2445555555555555555556666666666666666652 22222
Q ss_pred H--------------------HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 591 K--------------------NEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 649 (736)
Q Consensus 591 k--------------------~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e 649 (736)
. .-+.+++..|+..+...|.+.+ +|+.+|.+++....-.-.....+++.+...+..+.+
T Consensus 228 ~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~ 307 (546)
T KOG0977|consen 228 RRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISG 307 (546)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccc
Confidence 2 4455666677777777777666 777777766653322223344555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 004698 650 WKRKYGVAVREAKAALEKAA-----------IVQERTSKEMQQREDVLREEFSSTLAEK 697 (736)
Q Consensus 650 ~~~ky~~~~~e~kalle~~~-----------~~~e~~~e~~~~~~~~l~~e~~~~~~e~ 697 (736)
++.|...+..+- ++|++.+ ...|..+.++.++...+|+++..+..|.
T Consensus 308 Lr~klselE~~n-~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 308 LRAKLSELESRN-SALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred hhhhhccccccC-hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555554444433 2222222 2333445555555555555555555444
No 19
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.20 E-value=6.1e-06 Score=83.15 Aligned_cols=62 Identities=27% Similarity=0.311 Sum_probs=42.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~ 143 (736)
|+++|.+++|||+|+|.|+|.. +|..+....++|+.+-.+...+ +| ..+.|+||||+++...
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~-----~~--~~i~viDTPG~~d~~~ 64 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVW-----DG--RRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEE-----CC--eEEEEEECcCCCCccC
Confidence 7899999999999999999985 5766644444444432222111 23 4689999999986543
No 20
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.20 E-value=0.0027 Score=80.59 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653 (736)
Q Consensus 616 ~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k 653 (736)
..++..++..+..++.++.....+...++.++.++...
T Consensus 802 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~ 839 (1179)
T TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERR 839 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.19 E-value=0.0086 Score=70.41 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred CcccchhhHHH--HHHHHHHHHhcCCCCCccchHHHHHHHHHHHH----------HHHHHHHHHhhcccCC-CCCh-HHH
Q 004698 316 ATVLTGPVLIG--ITESYLDAINNGAVPTISSSWQSVEEAECRRA----------YDSATETYMSTFDRSK-PPEE-VAL 381 (736)
Q Consensus 316 g~~ltg~~l~~--l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a----------~~~A~~~Y~~~m~~~~-p~~e-~~L 381 (736)
+-.|||..... -.+.=|+-|.+..+|.|+.....+.+....-- +++.++.++..+.... .+++ .+.
T Consensus 55 ~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 55 KLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577776543 34555666777899999987766554433222 2222223322222211 0111 233
Q ss_pred HHHHHHHHHHHHHHhhhc---------ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 382 GEAHEAAVQKALAVYNAG---------AVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLR 449 (736)
Q Consensus 382 ~~~h~~~~~~Al~~F~~~---------s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~le~~l~ 449 (736)
.+.|+.....+...|+.. +|| .....++++|. .+...|..|...+..---......+..++..+.
T Consensus 135 e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G--~a~~~le~~l~-~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~ 208 (569)
T PRK04778 135 EEKNREEVEQLKDLYRELRKSLLANRFSFG--PALDELEKQLE-NLEEEFSQFVELTESGDYVEAREILDQLEEELA 208 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445566666666666542 455 55666777775 477788888766543223344556655555544
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.19 E-value=0.029 Score=71.46 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+-+|+||.|||||-++..|.
T Consensus 26 ~t~IvGPNGSGKSNI~DAi~ 45 (1163)
T COG1196 26 FTAIVGPNGSGKSNIVDAIR 45 (1163)
T ss_pred CeEEECCCCCchHHHHHHHH
Confidence 57899999999999999975
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.18 E-value=0.011 Score=71.42 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698 617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (736)
Q Consensus 617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e 696 (736)
++..+++.++...+-......+..+.....+.+.+.-.+..+...+...+...+.+++..+.++.....|+++....+.+
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333344555555555666666666666666666665555
Q ss_pred HH
Q 004698 697 KE 698 (736)
Q Consensus 697 ~~ 698 (736)
+.
T Consensus 431 ~~ 432 (1074)
T KOG0250|consen 431 AK 432 (1074)
T ss_pred HH
Confidence 43
No 24
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.16 E-value=0.032 Score=71.00 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=4.1
Q ss_pred cchHHHHH
Q 004698 147 YSTQIFSL 154 (736)
Q Consensus 147 ~d~~IFaL 154 (736)
.|+..|+|
T Consensus 40 ldAi~~~l 47 (1164)
T TIGR02169 40 GDAILFAL 47 (1164)
T ss_pred HHHHHHHh
Confidence 35555554
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.12 E-value=0.045 Score=69.99 Aligned_cols=89 Identities=16% Similarity=0.276 Sum_probs=73.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~ 592 (736)
+..+..++..+..++..+++.+++......+...+....+...+..++...+....+...++++..++..|..++..+..
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888889999999988888887888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHH
Q 004698 593 EISDWKRKY 601 (736)
Q Consensus 593 e~~e~~~~y 601 (736)
++...+..+
T Consensus 880 ~l~~~~~~~ 888 (1822)
T KOG4674|consen 880 RLKSAKTQL 888 (1822)
T ss_pred HHHHhHHHH
Confidence 777777766
No 26
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.11 E-value=7.6e-06 Score=83.76 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=57.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCcc-chHHH
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-STQIF 152 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~-d~~IF 152 (736)
|-++|..|+|||++.|.|+|.. .|..+.+..+||...-..... .+| ..|.++||||+.+.+.+... -..|.
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~-----~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~ 74 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGE-----VDG--RQVTVIDTPGLFDSDGSDEEIIREIK 74 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEE-----ETT--EEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeee-----ecc--eEEEEEeCCCCCCCcccHHHHHHHHH
Confidence 5689999999999999999986 488887777888765554331 123 56889999999765542211 11122
Q ss_pred HHhhhcc----ceE--EEccCCCCchHHhhhhHHHHHH
Q 004698 153 SLAVLLS----SMF--IYNQMGGIDESAIDRLSLVTQM 184 (736)
Q Consensus 153 aLa~LLS----S~~--IyN~~g~i~e~~l~~L~~v~el 184 (736)
- ++.++ .++ |.+.. .+++.+...+..+.++
T Consensus 75 ~-~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 75 R-CLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEI 110 (212)
T ss_dssp H-HHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHH
T ss_pred H-HHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHH
Confidence 1 11112 223 33333 7888888777766554
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.016 Score=71.82 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye 602 (736)
+..+..++..+++++..+......+.....++..|.++++.++.+..+|.+.++
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 561 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556666666666666666777777777766666666554
No 28
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.08 E-value=6.9e-06 Score=75.31 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=40.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|+|+|++++|||+|+|.|+|.. ...+++. .++|.....- ++.. ++ ..+.|+||||+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~-~~~~~~~-~~~T~~~~~~--~~~~---~~--~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK-LAKVSNI-PGTTRDPVYG--QFEY---NN--KKFILVDTPGINDG 60 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST-SSEESSS-TTSSSSEEEE--EEEE---TT--EEEEEEESSSCSSS
T ss_pred EEEECCCCCCHHHHHHHHhccc-ccccccc-ccceeeeeee--eeee---ce--eeEEEEeCCCCccc
Confidence 7899999999999999999854 3444443 4667766331 1111 22 35679999998643
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.08 E-value=0.014 Score=66.78 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh---HHHHHHHH
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS-------DWKRKYDQVLTKQK---AMEDQVCS 617 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~-------e~~~~yee~~~~~~---~~~~~~~~ 617 (736)
.......++........++..|+.++.++..+.....+.++.++.... +++.+.+....+.+ ..+...+.
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~ 283 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQ 283 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 344444555555556666666666666666655444444444432211 22333333333322 22346777
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659 (736)
Q Consensus 618 ~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~ 659 (736)
+++.|+..++.+++++.+.+.++..+.+|+.+....=+....
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~a 325 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMA 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999998776655444433
No 30
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.06 E-value=0.0064 Score=77.32 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
..+.+++..+..+..++..+....+.+..++..+...+..+......++..+
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 781 (1163)
T COG1196 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555444454455555555555555554444444444
No 31
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.04 E-value=5.9e-05 Score=79.16 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
.+-.-|.|+|..++|||+|+|.|+|.. .+.++ ...++|..+-+...+ .+| ..+.|+||||++..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~-~~~~~T~~~~~~~~~-----~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGER-KAATS-AFQSETLRVREVSGT-----VDG--FKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC-CcccC-CCCCceEEEEEEEEE-----ECC--eEEEEEECCCcCcc
Confidence 445568999999999999999999975 34443 344566665544322 123 56889999999754
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.01 E-value=0.0052 Score=73.18 Aligned_cols=178 Identities=10% Similarity=0.225 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS-------- 617 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~-------- 617 (736)
+.+..++.+++.+.|++++++..|......=-..++.|+++|...+.......+...+.-...+++.+....
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 455566666666666666666555555544444555555555555544444444432222111111111110
Q ss_pred --HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HhhHHHHHHHHH
Q 004698 618 --EIE-VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR-------EAKAALEKAAIVQE--RTSKEMQQREDV 685 (736)
Q Consensus 618 --~i~-~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~-------e~kalle~~~~~~e--~~~e~~~~~~~~ 685 (736)
+-+ .++.|.+++|..+..+++++....+++.+|+...+.+.. +.-+|+.-.+...+ ..+|..=.-|-+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222 355566666666666666666666666555554432222 12122211111111 222222233344
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 004698 686 LREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723 (736)
Q Consensus 686 l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~ 723 (736)
+.=++=++|-++-.++++.+..+.+.++++..|...+.
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455578888888899999999998888766665443
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.01 E-value=0.025 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=24.8
Q ss_pred ccCCeEEEEeecccccccccCccCChHHHHHHhhcccc
Q 004698 204 QFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241 (736)
Q Consensus 204 ~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~ 241 (736)
.+.|.|.|-=|||..-++.+ .-|.++|.--.|.+.|
T Consensus 27 tlt~~~~ps~~DWIGiFKVG--w~s~rdY~Tf~Wa~~p 62 (546)
T PF07888_consen 27 TLTPGFHPSSKDWIGIFKVG--WSSTRDYYTFVWAPVP 62 (546)
T ss_pred ecCCCCCCCCCCeeEEeecC--CCchhheeeEEeeccC
Confidence 35678888889998655543 2367788777776554
No 34
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.99 E-value=7.2e-05 Score=86.49 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=44.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT 144 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~ 144 (736)
-|.|+|.++.|||+|+|.|+|.. .|.++ ...++|..+-.+... .+| ..+.|+||+|+++...+
T Consensus 120 rIvLVGKTGVGKSSLINSILGek-vf~vs-s~~~~TTr~~ei~~~-----idG--~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEV-KFSTD-AFGMGTTSVQEIEGL-----VQG--VKIRVIDTPGLKSSASD 182 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccc-ccccc-CCCCCceEEEEEEEE-----ECC--ceEEEEECCCCCccccc
Confidence 59999999999999999999985 46553 344667666433211 133 46899999999865443
No 35
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.99 E-value=0.039 Score=64.74 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=64.0
Q ss_pred ccchhhHHH--HHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHH----------HHHhhcccCC-CCCh-HHHHH
Q 004698 318 VLTGPVLIG--ITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATE----------TYMSTFDRSK-PPEE-VALGE 383 (736)
Q Consensus 318 ~ltg~~l~~--l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~----------~Y~~~m~~~~-p~~e-~~L~~ 383 (736)
.++|..... -.+.=|+-|.+..+|.+.+.+..+.+....--+-.|.. .....+.... .+++ .+..+
T Consensus 53 ~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 53 NLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467766433 34566777778899999988766555433322222222 2222222110 0000 12233
Q ss_pred HHHHHHHHHHHHhhh-------c--ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 384 AHEAAVQKALAVYNA-------G--AVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLR 449 (736)
Q Consensus 384 ~h~~~~~~Al~~F~~-------~--s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~le~~l~ 449 (736)
.|+.........|+. . +|| .....++++|. .+...|..|...+..---.....++..++..+.
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G--~a~~~Le~~L~-~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~ 204 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYG--PAIEELEKQLE-NIEEEFSEFEELTENGDYLEAREILEKLKEETD 204 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc--hhHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444444444444443 2 355 45566666665 466777777655432222234455555555444
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=97.98 E-value=0.017 Score=71.45 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|..|+|+.|+|||+||..|.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467789999999999999965
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.98 E-value=0.0015 Score=62.63 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004698 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 642 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~ 642 (736)
..++..++.+++.++.++..+...++...+...... .+..-+...-.+.++..+.+.+...|++.++.+...+.|+...
T Consensus 41 ~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 41 QKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444444444444433322222 2333333333345566667777777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004698 643 AQEEVEEWKRKYGVAVREAKA 663 (736)
Q Consensus 643 ~~~E~~e~~~ky~~~~~e~ka 663 (736)
+..+..+|..||+.+..+-+.
T Consensus 120 le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.98 E-value=0.0048 Score=64.37 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhhh
Q 004698 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM---EDQVCSEIEVLKSR 625 (736)
Q Consensus 549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~---~~~~~~~i~~L~~k 625 (736)
..-+....+..+..+.....|+......++++..|..+|...+....+..++|++........ .+.+..+.+.+.++
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 344444466667777777778888888888888888888888888888888886655444332 22344444455555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 004698 626 STAAEARLAAAREQALSA 643 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~ 643 (736)
+..+|+.+..+...+.++
T Consensus 143 i~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555554444444443
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.93 E-value=0.039 Score=57.56 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD 549 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e 549 (736)
+.+...|..++..+++.++.....|..+...+.+.++.++
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~d 74 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRAD 74 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444444444444333
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.90 E-value=0.18 Score=65.77 Aligned_cols=182 Identities=15% Similarity=0.240 Sum_probs=86.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 515 ~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
.+...+..++..++.+...++...+...+.+ ++++.++..++..+..+..++..|+.++...+.++..+...++...
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444444444444444333333 4566666555555555666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004698 592 NEISDWKRKYDQVLTKQKAMEDQVCSEIE---VLKSRSTAAEARLAAAREQALSA---QEEVEEWKRKYGVAVREAKAAL 665 (736)
Q Consensus 592 ~e~~e~~~~yee~~~~~~~~~~~~~~~i~---~L~~k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky~~~~~e~kall 665 (736)
..++...+...+.....+...++++.+-+ .+..+.+++...+.+...+++.. ..--.+.+.|-+.=+.+.+..|
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554433333222222222222 11122222222222222222211 1111244555566666666777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698 666 EKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (736)
Q Consensus 666 e~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e 696 (736)
+.+....|..+..++.+...-.+++.+.+++
T Consensus 1170 eee~~~~e~~~~~lr~~~~~~~~el~~qle~ 1200 (1930)
T KOG0161|consen 1170 EEETLDHEAQIEELRKKHADSLAELQEQLEQ 1200 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655555555555544544444433
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.89 E-value=0.19 Score=64.26 Aligned_cols=76 Identities=29% Similarity=0.296 Sum_probs=45.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 004698 618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 693 (736)
Q Consensus 618 ~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~ 693 (736)
+++.++..+..++..+..+...+..++.+...|+.+++.+..+.+...+.+....+..++....+...+.++.+..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~ 711 (1201)
T PF12128_consen 636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQ 711 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455556666667777777777777777777777777777777655555544444444444444333
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.89 E-value=0.22 Score=64.91 Aligned_cols=160 Identities=15% Similarity=0.214 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL----------KRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~----------k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r 579 (736)
+.....++.+...+..+...+..++........+++ ...+..+.++...++..+.+...++.+...++++
T Consensus 858 e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e 937 (1930)
T KOG0161|consen 858 ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQE 937 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333222222 3667777777888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 004698 580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQK---AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE---EWKRK 653 (736)
Q Consensus 580 ~~~L~~~le~lk~e~~e~~~~yee~~~~~~---~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~---e~~~k 653 (736)
+..|+++++.+...+..|..++...-++.+ .+...+...+..|-..-..+|+++......+...+.++. ..+.|
T Consensus 938 ~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 938 VQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887744433333 333344444444444444456665555555555444433 33445
Q ss_pred HHHHHHHHHHHHHHHH
Q 004698 654 YGVAVREAKAALEKAA 669 (736)
Q Consensus 654 y~~~~~e~kalle~~~ 669 (736)
++..+.+....|++..
T Consensus 1018 le~~l~~le~~le~e~ 1033 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREK 1033 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 43
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.88 E-value=0.034 Score=56.46 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~ 589 (736)
+.+...++.+++.+..+...+....++.++.+.......+..-...+..+..+..+...+..++++++...+.|.+.++-
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek 101 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK 101 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666666666555555555554444443333222222222223334444444444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 590 lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
.|.-+..++...+ .+++.+.+...++ ..|..+|+.+..-+..-|+.|+
T Consensus 102 ~K~vi~~~k~NEE-----------~Lkk~~~ey~~~l---------------------~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 102 QKEVIEGYKKNEE-----------TLKKCIEEYEERL---------------------KKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHHHHHhHH-----------HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444332 2222222222222 2233445555555666666777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698 670 IVQERTSKEMQQREDVLREEFSSTL 694 (736)
Q Consensus 670 ~~~e~~~e~~~~~~~~l~~e~~~~~ 694 (736)
+.+++.....+++..+|++.++...
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e 174 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEE 174 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7777767777777777776666553
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.88 E-value=0.0099 Score=69.67 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004698 614 QVCSEIEVLKSRSTAAEARLA---AAREQALSAQEEVEEWKRKYGV 656 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~---~~~~q~~~~~~E~~e~~~ky~~ 656 (736)
.+..++.+|++++..+++... ...++....+.++.+++..+..
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~ 348 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544 3333344444444444444433
No 45
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.84 E-value=0.053 Score=62.14 Aligned_cols=87 Identities=28% Similarity=0.320 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004698 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 640 (736)
Q Consensus 561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~ 640 (736)
.+..+...+..++..++..+..|...++....+..+++..|++..+-..++..-..++++.-+++...+|.+|...+.|+
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444467777888888888888888899999999999999988888878888889999999999999999999999999
Q ss_pred HHHHHHH
Q 004698 641 LSAQEEV 647 (736)
Q Consensus 641 ~~~~~E~ 647 (736)
..+.++.
T Consensus 266 ~~~N~~~ 272 (629)
T KOG0963|consen 266 AKANSSK 272 (629)
T ss_pred Hhhhhhh
Confidence 9988884
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.81 E-value=0.18 Score=61.34 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHh
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+.+|. =|+|+.|||||-+|=.|.
T Consensus 61 g~~vN--fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 61 GPRVN--FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred CCCce--EeecCCCCcHHHHHHHHH
Confidence 34566 468999999999998874
No 47
>PRK00089 era GTPase Era; Reviewed
Probab=97.79 E-value=8.4e-05 Score=79.68 Aligned_cols=60 Identities=28% Similarity=0.481 Sum_probs=41.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
..++|+|+|++++|||+|+|.|+|..-. .+++. +.....||+.. .+..++|+||+|+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~-----------~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTE-----------DDAQIIFVDTPGIHKP 66 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEc-----------CCceEEEEECCCCCCc
Confidence 4689999999999999999999997521 12222 22223455442 1257999999998543
No 48
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.77 E-value=3.1e-05 Score=75.46 Aligned_cols=22 Identities=50% Similarity=0.794 Sum_probs=20.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|.+++|||+|+|.|+|..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999974
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.76 E-value=0.033 Score=63.22 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~ 589 (736)
...+..++.++...+.++..++.++.+.+..+.. ++..|..+...++.++.++..++.++..++.++..++++++.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~----l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK----QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333222 333333344444444444444444444444444444444444
Q ss_pred HHHHHH
Q 004698 590 LKNEIS 595 (736)
Q Consensus 590 lk~e~~ 595 (736)
.+....
T Consensus 122 ~~~~l~ 127 (428)
T PRK11637 122 QERLLA 127 (428)
T ss_pred HHHHHH
Confidence 443333
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.76 E-value=0.088 Score=67.86 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+++|+|+.|+|||++|+.|.+..
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccc
Confidence 578999999999999999988654
No 51
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.75 E-value=0.015 Score=59.14 Aligned_cols=158 Identities=15% Similarity=0.256 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
+++.+.|.++++.....+....++..+...+.+-+..+..+++.++.+..++.+.- ..+... +..+..++.+
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-~~L~~~-------k~rl~~~ek~ 101 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-QSLQNL-------KARLKELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHH
Confidence 45555555555555555555555555566666666666666666666655544322 223333 3344444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH---HH
Q 004698 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE---MK 702 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~---~~ 702 (736)
+..++-.......+...+..|-.+|.++|+.++.+..---+-.+-..|+.+..+...+..-.+++.+++...+-. +.
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~ 181 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALS 181 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 444444566666667777888889999999999888776667778888888888888888888888888776654 44
Q ss_pred HHHHHHHHH
Q 004698 703 EKATKIEHA 711 (736)
Q Consensus 703 ~~~~k~~~~ 711 (736)
.+..+++..
T Consensus 182 ~v~~~l~~~ 190 (201)
T PF13851_consen 182 QVSKKLEDV 190 (201)
T ss_pred HHHHHHHHH
Confidence 455555554
No 52
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.11 Score=59.18 Aligned_cols=51 Identities=25% Similarity=0.286 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 004698 674 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKV 724 (736)
Q Consensus 674 ~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~ 724 (736)
+++...+.++.-+.+.+.-.+++.+.+-+.-...+|..++++..+.+.+..
T Consensus 460 ~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~ 510 (581)
T KOG0995|consen 460 QILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNT 510 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555566666666555554443
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.15 Score=63.29 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=17.9
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|.+|+|+.|+|||+|+..|.
T Consensus 24 g~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 24 GINLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 356799999999999999863
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.69 E-value=0.0092 Score=61.66 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004698 639 QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL 718 (736)
Q Consensus 639 q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~ 718 (736)
+...+..|+.-|++.-..+..+. +.+.......+..++..+.+..+++..+..+.+..+.++..+..+.....++-+.|
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el-~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDEL-AELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444 44444555555666666667777777777777777666666666666655666666
Q ss_pred HHHhhhhhhhcc
Q 004698 719 RLELKVSFFDIY 730 (736)
Q Consensus 719 ~~~l~~~~~~~~ 730 (736)
...|....|-+|
T Consensus 169 ~~~l~~ell~~y 180 (239)
T COG1579 169 KEKLDPELLSEY 180 (239)
T ss_pred HHhcCHHHHHHH
Confidence 666666666555
No 55
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.64 E-value=0.021 Score=58.16 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 540 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 619 (736)
Q Consensus 540 ~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i 619 (736)
.+.+|+..-.+.-.++..++++++.+..+|+ .+-+.|..+++.+|.+...-+..+-+..+....+-.+....-
T Consensus 35 El~EFQegSrE~EaelesqL~q~etrnrdl~-------t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQLDQLETRNRDLE-------TRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333444444444444444444 444455555555554444433333333334433344444444
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 698 (736)
Q Consensus 620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~ 698 (736)
+.|+..++.+|.+++++++.-+.+-=.++|+..+.++++++. |-||-..-.-|..+ ....+|++|++++-+|..
T Consensus 108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErn-AfLESELdEke~ll----esvqRLkdEardlrqela 181 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERN-AFLESELDEKEVLL----ESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 566666777777999999999999999999999999999977 66655444443333 345678888888776653
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.64 E-value=0.16 Score=60.23 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh---HHHHHHHHHH----------HHHHHHHHHHHH
Q 004698 649 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST---LAEKEEEMKE----------KATKIEHAEQCL 715 (736)
Q Consensus 649 e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~---~~e~~~~~~~----------~~~k~~~~~~~~ 715 (736)
++..|.-.++++. +.||-+.+.+|+..|..+..+-.||+|+.-+ ..|.+.++.. -.-|++....+|
T Consensus 459 nlEekVklLeetv-~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~L 537 (1243)
T KOG0971|consen 459 NLEEKVKLLEETV-GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHL 537 (1243)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4445555555544 6666666777777777777777888776544 4444433222 224677777777
Q ss_pred hhHHHHhhhhhh
Q 004698 716 TTLRLELKVSFF 727 (736)
Q Consensus 716 ~~~~~~l~~~~~ 727 (736)
+..+.+++.+.|
T Consensus 538 qdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 538 QDQLQELTDQQE 549 (1243)
T ss_pred HHHHHHHHhhhh
Confidence 777777776654
No 57
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.64 E-value=8e-05 Score=72.43 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=40.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~ 143 (736)
|+++|.+.+|||+|.|+|.|.. ..+++ ++..+..|.|-+. + ..+.|+|+||+.+...
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~---------~--~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLG---------D--QQVELVDLPGIYSLSS 62 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEET---------T--EEEEEEE----SSSSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEec---------C--ceEEEEECCCcccCCC
Confidence 8999999999999999999987 55543 2334567888873 2 4689999999866543
No 58
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.33 Score=59.42 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=27.3
Q ss_pred ceeeCHHHHHHhhccC-----CC--EEEEEeeCCCCCChhHHHHHHh
Q 004698 53 KFRMDPEAVAALQLVK-----EP--IGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 53 ~l~l~~eAl~~L~~i~-----~~--v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.|-|..=.+.-+.+.- +| =.+=+|+||.|||||=++..||
T Consensus 83 RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmL 129 (1293)
T KOG0996|consen 83 RLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSML 129 (1293)
T ss_pred eeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHH
Confidence 4555554455554421 22 3478999999999999999875
No 59
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.63 E-value=0.066 Score=64.39 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 004698 582 SLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR-------LAAAREQALSAQEEVEEWK 651 (736)
Q Consensus 582 ~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~-------~~~~~~q~~~~~~E~~e~~ 651 (736)
.+...++.+...-.+++..| ++.+......++.+++.++.|+.++...+.. +..+.+.....+.|+++++
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~ 384 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLR 384 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334443333 3333333333444444444444443333333 3344444444455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 652 RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 691 (736)
Q Consensus 652 ~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~ 691 (736)
.+|+....+...+..+ +...+..+.+...+++.+++.+.
T Consensus 385 d~~d~~e~ki~~Lq~k-ie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 385 DMLDKKERKINVLQKK-IENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666433333 44444444444444444444444
No 60
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.62 E-value=0.00012 Score=77.87 Aligned_cols=56 Identities=30% Similarity=0.538 Sum_probs=40.0
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCccc-ccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQ-VAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~-~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+.|+|+|++++|||+|+|.|+|.. +. +++ +++....|||... + ..++|+||+|+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~~---------~--~qii~vDTPG~~~ 60 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTTG---------A--SQIIFIDTPGFHE 60 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEcC---------C--cEEEEEECcCCCC
Confidence 368999999999999999999975 32 222 3333445776531 1 3589999999864
No 61
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.61 E-value=0.1 Score=62.84 Aligned_cols=170 Identities=17% Similarity=0.228 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 639 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q 639 (736)
...+..|.-.+...+.+...|...+|+++.+..+-...+ ...+.....+...+..+|.+|++.+...|..+..+.+.
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666677777777776666555555 44556666666688888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698 640 ALSAQEEVEEWKRKYGVAVREAK------------AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATK 707 (736)
Q Consensus 640 ~~~~~~E~~e~~~ky~~~~~e~k------------alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k 707 (736)
++++..-+.|=.+....+..+.+ +-|+.+....++.++.....=...+-+...-+.....+++++..+
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666544444444444444 555666666665555543332222222333333444456666666
Q ss_pred HHHHHHHHhhHH---HHhhhhhhhcccc
Q 004698 708 IEHAEQCLTTLR---LELKVSFFDIYSN 732 (736)
Q Consensus 708 ~~~~~~~~~~~~---~~l~~~~~~~~~~ 732 (736)
++.++..++... .++++.....-|+
T Consensus 481 ~~~LQ~eLsEk~~~l~~~kee~s~l~s~ 508 (775)
T PF10174_consen 481 LESLQKELSEKELQLEDAKEEASKLASS 508 (775)
T ss_pred HHHHhhhhHHHHHHHHHhhhHHHHHhhc
Confidence 666665544333 3555555554443
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.60 E-value=0.44 Score=61.69 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 632 RLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
.+..+..++...+.++.+.+++++.+....
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.60 E-value=0.51 Score=60.54 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHH-HHh
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIE-VLK 623 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~-~L~ 623 (736)
|...-..++..++.++..+..++.....++..+....+.++.++.++...+..| +..+...+...+.++.+++ .++
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677778888888888888888888888888888888888888888888 4455555556667777777 666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 624 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 662 (736)
Q Consensus 624 ~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k 662 (736)
.+...++..+.++..++..+++|...|+........+.+
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~ 716 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELR 716 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888877655554444
No 64
>PRK10698 phage shock protein PspA; Provisional
Probab=97.59 E-value=0.044 Score=56.60 Aligned_cols=122 Identities=11% Similarity=0.190 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHH
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT--------KQKAMEDQVCSEI 619 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~--------~~~~~~~~~~~~i 619 (736)
.+++...++..+.+++..+..++..+-.+......++.+++.....+.+|..+.+..+. .+=.....+...+
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555556666666677777888888888888888888844444 3333344588888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
..|+..+...+..+..+..++..+++.+.+|+.|.+.+..+.+++--+..
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998877765443
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.21 Score=55.52 Aligned_cols=185 Identities=23% Similarity=0.251 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 583 (736)
Q Consensus 507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L 583 (736)
+.++++++.+..++....++...|.+++...+..+...+ ...+..+..+++.+++....+..|+.+. .++...|
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~L 117 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344666666666666666555555555544333332222 2233333333333344433333333333 3344444
Q ss_pred HHHHHHHHH--------------H--HHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 584 SKTVDSLKN--------------E--ISDWKRKYDQVLTKQKA-MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (736)
Q Consensus 584 ~~~le~lk~--------------e--~~e~~~~yee~~~~~~~-~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E 646 (736)
...|.++.. + ...-...|-..++..+. ..+.+.....+ +..+.....+-+.++..+..|
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~----l~~~~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQ----LAAVRAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 455555442 1 11222223333333322 12233333332 334555666667777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698 647 VEEWKRKYGVAVREAKAALEKAAIVQE---RTSKEMQQREDVLREEFSSTLAEKE 698 (736)
Q Consensus 647 ~~e~~~ky~~~~~e~kalle~~~~~~e---~~~e~~~~~~~~l~~e~~~~~~e~~ 698 (736)
-.+=+++-+.++.|.|-++.+....++ +.+++..+...+|+.++.++-.++.
T Consensus 194 q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888888999999988888887775555 8888999999999999888886654
No 66
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.57 E-value=0.00045 Score=68.41 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
....-|.|+|..++|||+|+|+|++......+++ ..++|.++-.|..+ + .+.|+||+|++..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~-------~---~~~liDtpG~~~~ 77 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK-TPGRTQLINFFEVN-------D---GFRLVDLPGYGYA 77 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCcceEEEEEEeC-------C---cEEEEeCCCCccc
Confidence 3344689999999999999999998752223333 33467776555321 1 4789999998643
No 67
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.57 E-value=0.14 Score=60.72 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=67.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645 (736)
Q Consensus 566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~ 645 (736)
....+.+....+.|+..+.+.+..+.++-.++.++|.+...+. +.... -..++++.....-++++..+.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl-------e~~~~----s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL-------ESAEQ----SIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----hHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666665543332 11111 111555566666667777777
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 646 EVEEWKRKYGVAVREA------KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKE 703 (736)
Q Consensus 646 E~~e~~~ky~~~~~e~------kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~ 703 (736)
+...|.+||+...... .+++....+..++.++-....-...-+++...+.+++.++..
T Consensus 481 ~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 481 AAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777766543322 233333334444444444444444445555555555544333
No 68
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.56 E-value=0.00014 Score=69.32 Aligned_cols=60 Identities=27% Similarity=0.500 Sum_probs=39.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.+|+++|+.++|||+|+|.|+|.. +.+......+|+ .+.+... ...++.++++||+|+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~--~~~~~~~~~~~~-~~~~~~~------~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTR-NRIRGIY------TDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc--eEeccCCCCcee-ceEEEEE------EcCCeEEEEEECCCCCc
Confidence 469999999999999999999875 333222222232 2222211 12246789999999854
No 69
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.56 E-value=0.056 Score=58.35 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 522 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 522 s~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
++...+-...+.|.+.++.+.+.+.+++...++.+...+........++.+..+.++++..|..+++..+. .|...+
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~---~~~~e~ 263 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE---QLLQEQ 263 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44445555556666666666666667777777777777777777788888888999999998887766555 666667
Q ss_pred HHHHHHhhH
Q 004698 602 DQVLTKQKA 610 (736)
Q Consensus 602 ee~~~~~~~ 610 (736)
+..+.....
T Consensus 264 e~~l~~k~~ 272 (297)
T PF02841_consen 264 ERLLEQKLQ 272 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554433
No 70
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=97.55 E-value=0.1 Score=63.49 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 349 SVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKN 428 (736)
Q Consensus 349 ~~~e~~~~~a~~~A~~~Y~~~m~~~~p~~e~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~ 428 (736)
-+.+..|.+++..|.+.|.+.+-.. . =...|+.-..+|+.+|...+-| ...+.|..+|++++.+.+..-++.
T Consensus 392 kFs~~~C~~~l~~A~~~Y~~~lP~~----Y--~~~~H~~~l~~A~~~~~~~arG--p~~~~~~~~L~~~C~~~W~~Grq~ 463 (895)
T PF10220_consen 392 KFSEHRCEKALPLAKEAYQENLPAH----Y--SSAEHENKLAQALRVFESHARG--PAVEKYLEKLQEECDAIWQSGRQL 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc----c--CHHHHHHHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667899999999999997654321 1 1467999999999999988887 456789999999998877666555
Q ss_pred HHHHH
Q 004698 429 VYMEA 433 (736)
Q Consensus 429 n~~~s 433 (736)
.+..|
T Consensus 464 CE~~S 468 (895)
T PF10220_consen 464 CEAVS 468 (895)
T ss_pred hhhhc
Confidence 44433
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.54 E-value=0.62 Score=60.15 Aligned_cols=207 Identities=20% Similarity=0.183 Sum_probs=132.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK----------RYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 582 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k----------~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~ 582 (736)
.+..++.++.+..++..+..++..+-+...+.+- +++-...-+....+-..+...+|..++..-.+.+..
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~ 210 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS 210 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444444431 344444444555566666677777777777777777
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------H
Q 004698 583 LSKT----VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE-----------V 647 (736)
Q Consensus 583 L~~~----le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E-----------~ 647 (736)
++.+ +..++.++.+.+..|.+.-.+ -+++.+++.+|..++...-..+..+++++.+.+.+ .
T Consensus 211 ~~re~s~~~~~L~~~L~~~~~~~~~~q~~----~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~ 286 (1822)
T KOG4674|consen 211 LRREHSIEVEQLEEKLSDLKESLAELQEK----NKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLN 286 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 7777 777777777777777432222 22444444444444444444444444444444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 004698 648 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKV 724 (736)
Q Consensus 648 ~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~ 724 (736)
.-|+++-+....+. +.+.+++..+++.++++..+..+.-+.+.++..-.+...+.+-.++...+..+..-++.+..
T Consensus 287 eL~ks~~ee~~~~~-~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~ 362 (1822)
T KOG4674|consen 287 ELWKSKLEELSHEV-AELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA 362 (1822)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 45888888877766 77888999999999999999998888888888888777777777777777777666665544
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.068 Score=63.87 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=111.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
...+||.++..+...-..++..|.+.++..+..+.++....+..++.. .-+..||+++....+....++++|-+.+
T Consensus 440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK----q~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK----QSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555555455566666666555555555555555443333 3335788888888888888888887777
Q ss_pred HHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 592 NEISDWKRKY-----------DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 660 (736)
Q Consensus 592 ~e~~e~~~~y-----------ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e 660 (736)
+...+-.... .+-....|....+++.++..|+..+...|+++..++.+++.++.-..|=..--+.+...
T Consensus 516 k~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~a 595 (697)
T PF09726_consen 516 KARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSA 595 (697)
T ss_pred HHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4433211111 13333455556677777777777777777777777776654444222222235667776
Q ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHH------H---HHHHhhHHHHHHHHHHHHHHHHHHH
Q 004698 661 AKAALEKAAIVQE-RTSKEMQQREDVL------R---EEFSSTLAEKEEEMKEKATKIEHAE 712 (736)
Q Consensus 661 ~kalle~~~~~~e-~~~e~~~~~~~~l------~---~e~~~~~~e~~~~~~~~~~k~~~~~ 712 (736)
. +.+...+..+| ...-+.+.++|=. + +.+.+.+...+.||.++.+||.+..
T Consensus 596 L-~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 596 L-SAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 44555555555 3333444444311 1 2233444556677888888888764
No 73
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.53 E-value=0.13 Score=52.22 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
..++..|..+....+++..+.+.++.-.+.+-.|...++..++..+..=.-++...++ |...+....+|
T Consensus 65 ~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e-----------y~~~l~~~eqr 133 (207)
T PF05010_consen 65 ELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE-----------YEERLKKEEQR 133 (207)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3456667777777788888888888888888888888877777777655555544333 33333333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA 668 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~ 668 (736)
|..+-. -+.++++.+..|+.+.+++++.=....+|.|-+.
T Consensus 134 y~aLK~---hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 134 YQALKA---HAEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 443332 3457777788888777777776666555555544
No 74
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.53 E-value=0.00012 Score=71.02 Aligned_cols=55 Identities=31% Similarity=0.400 Sum_probs=37.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|+++|.++.|||+|+|.|+|.. ...+++... +|++ +.|. |+ +. .++|+||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g-~T~~-~~~~-~~------~~--~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPG-ETKV-WQYI-TL------MK--RIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCC-eeEe-EEEE-Ec------CC--CEEEEECcCC
Confidence 357899999999999999999874 345555433 4444 3332 11 11 3789999995
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.49 E-value=0.4 Score=56.57 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH---hccc-CC-CchhHHHHHHHHHhh---h---hhHHHHH
Q 004698 434 DIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEY---ETSC-HG-PGKWQKLATFLQQSS---E---GPILDLV 502 (736)
Q Consensus 434 ~~~C~~~l~~le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y---~~~~-~G-p~K~~~L~~fLq~~~---~---~~il~~~ 502 (736)
...|....+.|.+.|.+..+..+..++.+-+.+..+-..| ..-. .| |-+......-++..+ . ..|=.+.
T Consensus 142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~ 221 (569)
T PRK04778 142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELL 221 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888877776666666655555554444 3311 11 111111111111111 0 0010111
Q ss_pred HHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------
Q 004698 503 KRLIDQIGSERSSLMLKYR------------SIEDNMKLLKKQLEDSERYKSEYL-KRYDDAINDKKKLADDY------- 562 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~e------------s~e~e~~~lk~~Le~~e~~~~e~~-k~~e~~In~lkk~~e~~------- 562 (736)
..|...+=....+|+.-++ .+..++..++.++..+...+..-+ +..+..+..+...++++
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE 301 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE 301 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122111112222222222 234455555555555444443332 22222222222222222
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
..-....+.....++..+..+.++...++.++..++..|
T Consensus 302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 222255666666677777777777777777777777776
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.36 Score=55.14 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHH
Q 004698 621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE--------------RTSKEMQQREDVL 686 (736)
Q Consensus 621 ~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e--------------~~~e~~~~~~~~l 686 (736)
.|+...+..........+.++.++.|+.+...+|+....++..+..+...+.| ..+.++..++++.
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~ 522 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSI 522 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344445555555566666666666655555444444433322 3444555556666
Q ss_pred HHHHHhhHHHHHHH
Q 004698 687 REEFSSTLAEKEEE 700 (736)
Q Consensus 687 ~~e~~~~~~e~~~~ 700 (736)
+-++..+....+.+
T Consensus 523 e~el~~~~~~~~ee 536 (581)
T KOG0995|consen 523 ELELDRMVATGEEE 536 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555544
No 77
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.44 E-value=0.061 Score=53.25 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l---kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
...+..+.++....+..++.+..+|.++....+++.++|++.+..+ ...++..+-+...-+.+|..+.+....+..+
T Consensus 45 er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n 124 (205)
T KOG1003|consen 45 ERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN 124 (205)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 4455777788888899999999999999999899899999888877 4444555544455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
+.++...-. .+++ ..+.|..+|..|-+|+..+|.+..-++|....++.+..+|..+-.....+.
T Consensus 125 lk~l~~~ee--------~~~q---~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky 188 (205)
T KOG1003|consen 125 LKSLSAKEE--------KLEQ---KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKY 188 (205)
T ss_pred HHHHHHHHH--------HHhh---hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence 444433221 2222 256889999999999999999999999999999999999999888877763
No 78
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.40 E-value=0.00099 Score=71.61 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeec
Q 004698 59 EAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDS 135 (736)
Q Consensus 59 eAl~~L~~i---~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDt 135 (736)
+.+++|..+ +.+-..|.|+|..+.|||+|+|.|+|... |.+++ ..++|...-+... ..+| ..+.++||
T Consensus 23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~-f~s~t~~~~~~~~-----~~~G--~~l~VIDT 93 (313)
T TIGR00991 23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSA-FQSEGLRPMMVSR-----TRAG--FTLNIIDT 93 (313)
T ss_pred HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeEEEEEE-----EECC--eEEEEEEC
Confidence 344455433 44566789999999999999999999752 22221 1223222211111 1133 56899999
Q ss_pred CCCccc
Q 004698 136 EGIDAY 141 (736)
Q Consensus 136 eG~~~~ 141 (736)
+|+++.
T Consensus 94 PGL~d~ 99 (313)
T TIGR00991 94 PGLIEG 99 (313)
T ss_pred CCCCch
Confidence 999754
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.36 E-value=0.48 Score=54.59 Aligned_cols=184 Identities=15% Similarity=0.230 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHh---
Q 004698 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD---DAINDKKKLA-DDYTSRINNLQGEN--- 573 (736)
Q Consensus 501 ~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e---~~In~lkk~~-e~~e~~~~~Le~k~--- 573 (736)
+.++....++-+...|+.....+..++..++++++..--...+++.+-+ +.|+-++..- ..+.....-.+.+.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~ 238 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTAD 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence 3444444555556666666666666666666666554433333331111 1111110000 01111111111111
Q ss_pred ------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhhhHHHHHH
Q 004698 574 ------ISLREKSSSLSKTVDSLK-NEISDWKRKYDQVLTKQK--------------AMEDQVCSEIEVLKSRSTAAEAR 632 (736)
Q Consensus 574 ------~sl~~r~~~L~~~le~lk-~e~~e~~~~yee~~~~~~--------------~~~~~~~~~i~~L~~k~~~~E~~ 632 (736)
+.|..-+..++.++|.-. .-..+|..-|+.-+...+ -+.......|..|+.|++.+|.+
T Consensus 239 ~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~ 318 (546)
T KOG0977|consen 239 NREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESR 318 (546)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccccc
Confidence 223344445555555433 445566666766666666 33346677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698 633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (736)
Q Consensus 633 ~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~ 695 (736)
.....++.+-++.++.+=+|-|+..+..- +..+..++.+..+|..|+..++.
T Consensus 319 n~~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 319 NSALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred ChhHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998777644 33344455555566666666553
No 80
>PRK03918 chromosome segregation protein; Provisional
Probab=97.35 E-value=0.47 Score=58.81 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQL 534 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~L 534 (736)
..++..++.++..++.++..++..+
T Consensus 206 ~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 206 LREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.34 E-value=0.042 Score=52.76 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004698 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA 636 (736)
Q Consensus 557 k~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~ 636 (736)
..+..++.+...++..+.+++.+...|+.+|+.+...+.+.+...++.-... ...+.+...|..|...+..++.++..+
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3345556666677777777788888888888888888888877776654433 223455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004698 637 REQALSAQEEVEEWKRKY 654 (736)
Q Consensus 637 ~~q~~~~~~E~~e~~~ky 654 (736)
...++.+...+.+..|+.
T Consensus 100 ~ekl~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 100 TEKLREADVKAEHFERKV 117 (143)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 555555444443333333
No 82
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.34 E-value=0.00032 Score=74.79 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=45.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCC-------CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST-------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-------~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.|+|..++|||+|+|.|++.. |..... ..++|.++-.....+. .+|..+.+.++||+|+++
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~--~~~~~~~~~~~~~~~~~T~~i~~~~~~i~---~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK--LIPSDYPPDPAEEHIDKTVEIKSSKAEIE---ENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CccccCCCCccccccCCceEEEEEEEEEE---ECCEEEEEEEEecCCccc
Confidence 48899999999999999999875 322211 2356777766654442 246668899999999974
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.33 E-value=0.23 Score=50.23 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
....+++.+++.+++.+..+...|+...--.++++ .+|+..-+++=..+.....++..|..++....++...++..
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL----~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKAL----QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777666666666655544444 45566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH---HHHHH-HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 587 VDSLKNEISDWKRKY---DQVLT-KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (736)
Q Consensus 587 le~lk~e~~e~~~~y---ee~~~-~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~ 647 (736)
+-....++.-.+... +..+. ..=.+.+++..++..++.+..+.+.++..+.++++.+.+.+
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 555544444333333 22222 23334568888888888888888888888888887776664
No 84
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.33 E-value=0.00011 Score=71.83 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc-------CCCCCccceEEeeccccccccCCCCceE
Q 004698 58 PEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-------STHRPCTKGLWLWSAPLKRTALDGTEYN 129 (736)
Q Consensus 58 ~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-------~~~~~~T~Giw~w~~p~~~~~~~g~~~~ 129 (736)
.+.++.|.. +.. -++.++|+.+.|||+|+|.|++.. -+.++ .|...+|..-++.- |+|
T Consensus 23 ~~g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~-~~~t~~is~~~~rGkHTTt~~~l~~l-------~~g---- 88 (161)
T PF03193_consen 23 GEGIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEA-KQKTGEISEKTGRGKHTTTHRELFPL-------PDG---- 88 (161)
T ss_dssp TTTHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEE-------TTS----
T ss_pred CcCHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhc-chhhhhhhcccCCCcccCCCeeEEec-------CCC----
Confidence 444555543 344 467889999999999999999873 12222 22222333333321 222
Q ss_pred EEEeecCCCccc
Q 004698 130 LLLLDSEGIDAY 141 (736)
Q Consensus 130 v~llDteG~~~~ 141 (736)
.+++||||+.++
T Consensus 89 ~~iIDTPGf~~~ 100 (161)
T PF03193_consen 89 GYIIDTPGFRSF 100 (161)
T ss_dssp EEEECSHHHHT-
T ss_pred cEEEECCCCCcc
Confidence 478999998654
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.32 E-value=0.036 Score=52.46 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004698 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA 636 (736)
Q Consensus 557 k~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~ 636 (736)
..+..+.+++..+......+..++..+..+++.......+...+|+..+...-.+ .+.|..|+..+..+...+..+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~----~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED----IKELQQLREELQELQQEINEL 78 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888889999999999999999999999998877766332 344555555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 004698 637 REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692 (736)
Q Consensus 637 ~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~ 692 (736)
+..+++++.++..-+. .+.+.|..|++.+...+++++++..+..=|.+++.+
T Consensus 79 ~~~~~~a~~~l~~~e~----sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 79 KAEAESAKAELEESEA----SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666533322 245677777788888887777777777777766643
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.30 E-value=0.25 Score=50.25 Aligned_cols=106 Identities=17% Similarity=0.333 Sum_probs=65.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 004698 519 KYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENIS---LREKSSSLSKTVDSLKN 592 (736)
Q Consensus 519 k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~s---l~~r~~~L~~~le~lk~ 592 (736)
-+.+++++++.+++..+..++.+.+.. +++.+++...+...+.+..+...++++..+ +..++..+.+++..++.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777777765 466666666666666666666666555554 33455555666666666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698 593 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (736)
Q Consensus 593 e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~ 624 (736)
+-..+..+|...-.+.......+..-|.+++.
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444443334445555554444
No 87
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.30 E-value=0.00038 Score=67.46 Aligned_cols=55 Identities=33% Similarity=0.389 Sum_probs=38.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|.|+|.+++|||+|+|.|++.. .+.++++ +.|.--|.|.. + + ..+.|+||||+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~-~~~~~~~--~~~t~~~~~~~-~------~--~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKL-KLKVGNV--PGTTTSQQEVK-L------D--NKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccc-cccccCC--CCcccceEEEE-e------c--CCEEEEECCCC
Confidence 458899999999999999999864 3445444 33333356642 1 1 24789999996
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.30 E-value=0.00055 Score=65.05 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=39.6
Q ss_pred EeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 75 SVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 75 sv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
+++|..++|||+|+|.|++....+ .+...++|...+.....+ + .+.+.++||+|++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~--~~~~~~~t~~~~~~~~~~-----~--~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI--VEDTPGVTRDRIYGEAEW-----G--GREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe--ecCCCCceeCceeEEEEE-----C--CeEEEEEECCCCCCc
Confidence 479999999999999999875212 222335566555544322 2 267899999998653
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.28 E-value=0.056 Score=60.69 Aligned_cols=43 Identities=7% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
...+.+++..++.++..+..++..+..+++.++.+....+..|
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 90
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.27 E-value=0.64 Score=55.46 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHH-------HHhhhhH
Q 004698 558 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIE-------VLKSRST 627 (736)
Q Consensus 558 ~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~-------~L~~k~~ 627 (736)
++++.+.+....+.+++.+-+.+..|....-.+..+-.+..+.. ++.+.+.......+.-.++ .+..|+.
T Consensus 411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555555555555544444444444444444444444433333 1111111111112222222 3333555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 628 AAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659 (736)
Q Consensus 628 ~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~ 659 (736)
.....+.+.++++..+.-|+..+.++......
T Consensus 491 ~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 491 SQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666777777777777777777777544443
No 91
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.21 E-value=0.00097 Score=67.28 Aligned_cols=59 Identities=32% Similarity=0.441 Sum_probs=39.4
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+.++..|+|+|+.++|||+|+|.|++.. |.+. ++..+.+..+.+ ++ ...+.|+||+|+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~---------~~--~~~~~i~Dt~G~~ 100 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRL---------PD--GREVLLTDTVGFI 100 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEe---------cC--CceEEEeCCCccc
Confidence 3677899999999999999999999864 3222 222222222211 11 1368889999984
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.21 E-value=0.00068 Score=65.38 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+++|.+....|. .....|.|+..+...++. .+|..+.+.++||+|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPV--DTDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEe--CCCCEEEEEEEECCCH
Confidence 78999999999999999986533342 334567888776554433 2466789999999994
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.20 E-value=1.3 Score=57.37 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=17.8
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+...|.|+.|||||++|..|+
T Consensus 25 g~~~~~G~NGsGKS~~lda~~ 45 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLL 45 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 467789999999999999744
No 94
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.18 E-value=0.00063 Score=67.39 Aligned_cols=55 Identities=35% Similarity=0.332 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|+|+|.+++|||+|+|.|+|.. .+.+++.. .+|++ |-|.. + + ..+.|+||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~p-g~T~~-~~~~~-~------~--~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR-ACNVGATP-GVTKS-MQEVH-L------D--KKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc-cceecCCC-CeEcc-eEEEE-e------C--CCEEEEECcCC
Confidence 468999999999999999999874 36666542 45666 34431 1 1 13789999995
No 95
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.18 E-value=0.0016 Score=63.04 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.|.|+|..++|||+|+|+|.+.. |.+.+. ...|.++-.+.... ..+.+.++||+|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~--~~~~~~-~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK--PEVAPY-PFTTKSLFVGHFDY-------KYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC--CccCCC-CCcccceeEEEEcc-------CceEEEEEECCCcC
Confidence 47899999999999999999876 443321 12355555544321 23679999999984
No 96
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.17 E-value=0.069 Score=50.59 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
..+..++..+....+.....+..++..++.......+++.+|+.++... ......+..++.++..+...+..|...
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H----a~~~~~L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH----AEDIKELQQLREELQELQQEINELKAE 81 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888999999888888888899999888766 333445566777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004698 587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 642 (736)
Q Consensus 587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~ 642 (736)
.++.+......+...+.. ...+.+++.+++.|+.++...+.-+..|+++
T Consensus 82 ~~~a~~~l~~~e~sw~~q-------k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 82 AESAKAELEESEASWEEQ-------KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777766665555432 3355666666666666666677666666654
No 97
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.15 E-value=0.00099 Score=62.48 Aligned_cols=59 Identities=32% Similarity=0.428 Sum_probs=36.2
Q ss_pred eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
|+|+.++|||+|+|.|++.. +.......++|...-.....+ +....+.++||+|+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE--VAIVSPVPGTTTDPVEYVWEL------GPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc--ccccCCCCCcEECCeEEEEEe------cCCCcEEEEECCCCCccc
Confidence 68999999999999999874 221122223333332222111 113568999999986544
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.15 E-value=0.13 Score=62.62 Aligned_cols=207 Identities=9% Similarity=0.088 Sum_probs=100.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIN---DK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 516 L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In---~l-kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
.....+-++..+..+++++++++..+++|++.+...-. .+ ...+.++..+++..+.+...++.+...++..+....
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~ 271 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGG 271 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445556667777777777777777777653321100 00 122333333333333333333333333333322111
Q ss_pred HHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 592 NEISDWKRKYDQVLT--KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 592 ~e~~e~~~~yee~~~--~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
... .......+ ........+..++.+++.++..+..+..+-.-++..++.++.+++..++..+.+....++...
T Consensus 272 ~~~----~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~ 347 (754)
T TIGR01005 272 SLD----VLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQA 347 (754)
T ss_pred Ccc----chhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000 000122334444444444444444455555566777777777777766655555444444333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698 670 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFF 727 (736)
Q Consensus 670 ~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~ 727 (736)
.......+..+.+++.++.++..+ .....++.+++..++-.++-...++.++++...
T Consensus 348 ~~a~~~~~~L~~~l~~~~~~~~~~-~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 348 DAAQARESQLVSDVNQLKAASAQA-GEQQVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555432 233456778888888888888888777776544
No 99
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.14 E-value=0.00073 Score=71.24 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
..+-=|+|+|++..|||+|-|+++|+. .|.++..+..+|.-|---+. .| +..++|+||||+-+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~t-------s~-eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIIT-------SG-ETQLVFYDTPGLVSKK 134 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEe-------cC-ceEEEEecCCcccccc
Confidence 466679999999999999999999985 46676555544443322111 12 3679999999986543
No 100
>PRK09039 hypothetical protein; Validated
Probab=97.13 E-value=0.1 Score=57.45 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653 (736)
Q Consensus 574 ~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k 653 (736)
..++.++..+..+++.++.....+...|..... .....+.+...|+.++.......+++..+...++++++.+|..
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~----~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAG----AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555552211 1123444445555555555556666666777777776555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 654 YGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 708 (736)
Q Consensus 654 y~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~ 708 (736)
-+.++.++...|....+++.+.+.|+.++..++++...++......+
T Consensus 153 --------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 153 --------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 24445555555555566666666666666666655444444444444
No 101
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.13 E-value=0.0019 Score=62.61 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|..++|||+|+|.|.|.. ..++. +....+.|.-.+ ++ ...+.|+||+|+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~---------~~-~~~~~l~DtpG~~ 59 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRV---------DD-GRSFVVADIPGLI 59 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEc---------CC-CCeEEEEecCccc
Confidence 7899999999999999999864 22221 111223344322 11 1368899999984
No 102
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.12 E-value=0.0011 Score=66.86 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=48.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCC---cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchH
Q 004698 74 VSVCGRARQGKSFILNQLLGRSS---GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQ 150 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~---gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~ 150 (736)
|+|+|+.++|||+|+|.|+|... |-.+.. .-.+|.-+ .++.. ++ ...+.++||+|++...... +.-
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~----~~~~~--~~--~~~l~l~DtpG~~~~~~~~--~~~ 72 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKR----TPYPH--PK--FPNVTLWDLPGIGSTAFPP--DDY 72 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCc----eeeec--CC--CCCceEEeCCCCCcccCCH--HHH
Confidence 78999999999999999998531 111100 11122111 11111 11 2357889999987433221 111
Q ss_pred HHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698 151 IFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (736)
Q Consensus 151 IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (736)
+-.+...=..++|+-..+.+.+.+...+..
T Consensus 73 l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~ 102 (197)
T cd04104 73 LEEMKFSEYDFFIIISSTRFSSNDVKLAKA 102 (197)
T ss_pred HHHhCccCcCEEEEEeCCCCCHHHHHHHHH
Confidence 111111113556665555666655544443
No 103
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.78 Score=51.96 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=96.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD----DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e----~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l 587 (736)
++..|+.+|+.++++.+..+..++....+...|...+. ..+..-..+++.-.++-..+-.++-.++..+..++..|
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999888873222 22222233333333333333333444444444444444
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 004698 588 DSLKNEISDWKRKY----------DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA---QEEVEEWKRKY 654 (736)
Q Consensus 588 e~lk~e~~e~~~~y----------ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky 654 (736)
...+.|..-+.+.. +..--..|.+..+|+-+=+-|-+-|+.+|+.+-.+.++.-++ |=|++-+|+-.
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei 203 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI 203 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence 44443333333333 333333344444555555555568999999977777776555 44666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004698 655 GVAVREAKAALEKAAIVQERTS 676 (736)
Q Consensus 655 ~~~~~e~kalle~~~~~~e~~~ 676 (736)
.++.++. .+|....+...+..
T Consensus 204 kRleEe~-elln~q~ee~~~Lk 224 (772)
T KOG0999|consen 204 KRLEEET-ELLNSQLEEAIRLK 224 (772)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH
Confidence 7777766 55555554444333
No 104
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.09 E-value=0.00098 Score=62.50 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=39.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|+++|..++|||+|+|.|++.. |..... ...|..+|.....+ ++..+.+.++||+|.
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK--FITEYK-PGTTRNYVTTVIEE-----DGKTYKFNLLDTAGQ 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CcCcCC-CCceeeeeEEEEEE-----CCEEEEEEEEECCCc
Confidence 7899999999999999999876 544332 23445555533221 343467899999994
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.08 E-value=0.52 Score=52.43 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL-------KNEISDWKRKYDQVLTKQKAMEDQVCSE 618 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l-------k~e~~e~~~~yee~~~~~~~~~~~~~~~ 618 (736)
+-+-+.||.++..++.+..++-....+...++..++.|..-+... +.+..-+....+.........+++|..+
T Consensus 358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e 437 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE 437 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445667777777777666666444444444444444444444444 4444444444444444444445555555
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhHHHHHHHHHHHHHHHhhH
Q 004698 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-IVQE---RTSKEMQQREDVLREEFSSTL 694 (736)
Q Consensus 619 i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-~~~e---~~~e~~~~~~~~l~~e~~~~~ 694 (736)
|. .|-..+ -.|..+.+.+-....|+.- .-..|..||+|. +.++ |.-+..+.+.-.|.++|....
T Consensus 438 iQ---qKnksv-sqclEmdk~LskKeeever--------LQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 438 IQ---QKNKSV-SQCLEMDKTLSKKEEEVER--------LQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HH---HhhhHH-HHHHHHHHHhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 111111 0122222222222222211 112355566665 4444 444444555557788888777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004698 695 AEKEEEMKEKATKIEHAE 712 (736)
Q Consensus 695 ~e~~~~~~~~~~k~~~~~ 712 (736)
++.-.+-..+-.+++++.
T Consensus 506 kenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 506 KENLEERQKLKSRLEKLV 523 (527)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 776666666666666653
No 106
>PRK09039 hypothetical protein; Validated
Probab=97.06 E-value=0.2 Score=55.20 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
.+++..+.+++..++.++.+...|+............++..+..+..+..+.+..|.+ .+.....++++|+.|+.+
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se----~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSAR----ALAQVELLNQQIAALRRQ 152 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777765544444444555555555555555555543 344456688888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~ 658 (736)
+..+|+.+++++.+-...+..+.++++..+.++
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777666666655554444444
No 107
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=1.3 Score=53.65 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 610 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (736)
Q Consensus 610 ~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~ 658 (736)
...+...+++.........+|-.+..+.+....+..++..+..||+-+-
T Consensus 892 ~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 892 TSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred hHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 3344555555555567777788888888888888888888888887765
No 108
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.04 E-value=0.0019 Score=61.21 Aligned_cols=60 Identities=27% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
-|+++|+.++|||+|+|.|++.. +.......++|.-+. ...+. .+ ...+.++||+|+...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~--~~~~~---~~--~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVI--EESID---IG--GIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceE--EEEEE---eC--CEEEEEEECCCcCCC
Confidence 37899999999999999999875 222111222232211 11111 11 246889999998643
No 109
>PRK12289 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.0008 Score=74.08 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=39.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCC------CCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~ 143 (736)
++.|+|+.+.|||+|+|.|++.. ...++... .-+|+.+-++.. ++| .+|+||||+..++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l------~~g----~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFEL------PNG----GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEEC------CCC----cEEEeCCCcccccc
Confidence 47899999999999999999763 12232211 124666655432 233 27899999965544
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.01 E-value=0.17 Score=48.18 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698 560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 639 (736)
Q Consensus 560 e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q 639 (736)
-++.++....+.+.+++.+++-.|..+++....+........+ .++++.+.++.+|..+....+.++..+.+.++.
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daE----n~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAE----NSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777787777777766665555444 577778888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698 640 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (736)
Q Consensus 640 ~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~ 694 (736)
-+.+.+++.+|+.+...+.. ......+.++.++..-..+.++++...
T Consensus 82 k~~L~k~lq~~q~kv~eLE~--------~~~~~~~~l~~~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELES--------LNSSLENLLQEKEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666554433 333444444444444344444444433
No 111
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.00 E-value=0.001 Score=63.73 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
||+|+|.+++|||+|+|+|.|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~ 24 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE 24 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc
Confidence 79999999999999999999753
No 112
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.98 E-value=0.0028 Score=64.08 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=39.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+|+|..++|||.|+|++++.. |.-. ..| |.|.-.+...+ ..+|..+.+.++||+|+..
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~--f~~~--~~p-t~~~~~~~~~i---~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQE--FPEE--YIP-TEHRRLYRPAV---VLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCC--CCcc--cCC-ccccccceeEE---EECCEEEEEEEEeCCCccc
Confidence 7899999999999999999865 5321 122 32322221111 1246668899999999754
No 113
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.98 E-value=0.0025 Score=62.45 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=37.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccccc-------CCC-CCccceEEeecccccc--ccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVA-------STH-RPCTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~-------~~~-~~~T~Giw~w~~p~~~--~~~~g~~~~v~llDteG~~~ 140 (736)
|+++|..++|||+|+|+|++....|.-+ ++. ...+.|+=........ ...++..+.+.|+||+|...
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 7899999999999999999753222110 000 0012233222111100 00135568899999999753
No 114
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.97 E-value=1.3 Score=52.24 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 004698 561 DYTSRINNLQGENISLREKSSSLSKTVDSLK---NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS 626 (736)
Q Consensus 561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk---~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~ 626 (736)
++.-.+-.-..+..+..+.+..|+++.+.+. ..+.+.++..++.+......+.+.+.+|++|+++.
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444444444443333 22333333334444444444555566666666643
No 115
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.97 E-value=0.0014 Score=62.65 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=37.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|+++|..++|||+|+|.|++... ....++...+|.-++.+..+ + .+.++||+|++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~-------~---~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVN-------D---KFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEcc-------C---eEEEecCCCcccc
Confidence 78999999999999999995431 11112223345555554321 1 6889999998654
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.3 Score=52.17 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH------
Q 004698 563 TSRINNLQGENISLREKSSSLSKTV-------DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA------ 629 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~l-------e~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~------ 629 (736)
.+++.+|+.+++.|..++..|...| -..|.++.+++..-+-.++ +.++++.+|.+++.++..+
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is----ei~qlqarikE~q~kl~~l~~Ekq~ 511 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS----EIDQLQARIKELQEKLQKLAPEKQE 511 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3344444444444444444444444 3444566666555544333 2345555555555543322
Q ss_pred -HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 630 -EARLAAAREQA---LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE---RTSKEMQQREDVLREEFSSTLAEKEEEMK 702 (736)
Q Consensus 630 -E~~~~~~~~q~---~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e---~~~e~~~~~~~~l~~e~~~~~~e~~~~~~ 702 (736)
+.++....... ..-++++.-.+++-+-+....|..++....+.+ ..++....++..|++...+.+-.+...+|
T Consensus 512 l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 512 LNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111110 111334444444444455545544444444444 33444555666777777776666666677
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 004698 703 EKATKIEHAEQCLTTLRL 720 (736)
Q Consensus 703 ~~~~k~~~~~~~~~~~~~ 720 (736)
..-.|+.+++.+.-.|.-
T Consensus 592 ~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 592 NERDKLKEAETKALELIG 609 (1118)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777766555544
No 117
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.95 E-value=0.0013 Score=62.63 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=35.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.|.++|..++|||+|+|.|++... ..++... .+|+... | +.. ++ .+.++||+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~-~~~~~~~-~---~~~---~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATP-GKTKHFQ-T---IFL---TP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCC-CcccceE-E---EEe---CC---CEEEEECCCcC
Confidence 577899999999999999998752 2333322 2344322 2 111 12 37899999974
No 118
>PRK15494 era GTPase Era; Provisional
Probab=96.95 E-value=0.0013 Score=72.34 Aligned_cols=58 Identities=24% Similarity=0.450 Sum_probs=39.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCC---CccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~---~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|+|+|..++|||+|+|.|+|.. |.. ++... ....|++.|. | ..++|+||+|+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k--~~ivs~k~~tTr~~~~~~~~~~---------~--~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEK--LSIVTPKVQTTRSIITGIITLK---------D--TQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCc--eeeccCCCCCccCcEEEEEEeC---------C--eEEEEEECCCcC
Confidence 355679999999999999999999875 432 22221 1223555542 2 458999999974
No 119
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.94 E-value=0.0015 Score=65.11 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=39.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+.-|+|+|..++|||+|+|.|++...-..+.++ -.+|..+-.+.. ...+.|+||+|++
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~----------~~~l~l~DtpG~~ 81 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFFEV----------NDKLRLVDLPGYG 81 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEEec----------CCeEEEeCCCCCC
Confidence 3445999999999999999999986411122222 245665543321 1468999999975
No 120
>PRK12288 GTPase RsgA; Reviewed
Probab=96.92 E-value=0.00081 Score=73.97 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCC-----CCc-cceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH-----RPC-TKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~-----~~~-T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
++.++|+.+.|||+|+|.|+|.. ...+|.-. ..+ |+..-+..- +.| .+|+||||+..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l------~~~----~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHF------PHG----GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEe------cCC----CEEEECCCCCcc
Confidence 46789999999999999999863 23333221 122 434333322 222 258999998644
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.92 E-value=0.56 Score=48.70 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 555 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 555 lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
++..+++++.+...++.++..+.+|+..++..+.+.+
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444566666666666666666666666665554443
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.91 E-value=1.4 Score=54.41 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=32.3
Q ss_pred ceeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHh
Q 004698 53 KFRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 53 ~l~l~~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.++++.+=.++|..|. +-.+=|.++-..+|||=|-|-.|-
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ln 109 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILN 109 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhh
Confidence 5778888888888775 677788888889999999887753
No 123
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.90 E-value=0.58 Score=48.24 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHH
Q 004698 551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV--------LTKQKAMEDQVCSEIEVL 622 (736)
Q Consensus 551 ~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~--------~~~~~~~~~~~~~~i~~L 622 (736)
+...+...+.+++..+...+..+-.+......++.+++.....+..|..+.+.. +..+=.....++..+..|
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l 104 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444445555555556666666677777777777777776333 333333344556666677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 623 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (736)
Q Consensus 623 ~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~ 667 (736)
+..+..+...+..+..++..++..+.+++.|-+.+..+.+.+--+
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777888888888888888877777666554443
No 124
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.90 E-value=0.0015 Score=73.11 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=41.3
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++=|+++|.+.+|||+|||.|.+... .+++ |+.....|++.+. + ...++|+||||+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~--------~--~~~i~~vDtPGi~ 218 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVD--------D--ERSFVVADIPGLI 218 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeC--------C--CcEEEEEeCCCcc
Confidence 55699999999999999999998652 3332 3334456777653 1 1358999999984
No 125
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.90 E-value=1 Score=50.12 Aligned_cols=86 Identities=24% Similarity=0.261 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHH
Q 004698 642 SAQEEVEEWKRKYGVAVR--EAKAA-LEKAAIVQERTSKEMQQREDVLREEFSSTLAEK-------EEEMKEKATKIEHA 711 (736)
Q Consensus 642 ~~~~E~~e~~~ky~~~~~--e~kal-le~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~-------~~~~~~~~~k~~~~ 711 (736)
..+.-+.|++++.+..+- +-|.. ||.++...+..+.+++.++..++.++.++..+. +.+....-+.++..
T Consensus 459 ~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~ekl 538 (622)
T COG5185 459 SIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKL 538 (622)
T ss_pred hHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345556677777776543 33444 666666666666666666666666666665444 33344455667777
Q ss_pred HHHHhhHHHHhhhhhh
Q 004698 712 EQCLTTLRLELKVSFF 727 (736)
Q Consensus 712 ~~~~~~~~~~l~~~~~ 727 (736)
|++|..++...+.+..
T Consensus 539 E~el~~lnL~s~ts~l 554 (622)
T COG5185 539 EKELNDLNLLSKTSIL 554 (622)
T ss_pred HHHHHHhhhhccchHh
Confidence 7777777765554443
No 126
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.89 E-value=0.0016 Score=62.54 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=37.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.++|+.++|||+|+|.|++.. |.... +.|.|+-.-...+. -+|..+.+.++||+|.
T Consensus 3 i~liG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT--FDNQY---QATIGIDFLSKTMY---LEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCccC---CCceeeeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999876 54321 22344321111111 1244577899999994
No 127
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.87 E-value=1.5 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (736)
Q Consensus 569 Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~ 604 (736)
++.++.++..++..--..|++.++++..++..|...
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777777777777777443
No 128
>PRK01156 chromosome segregation protein; Provisional
Probab=96.81 E-value=2.4 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|..|+|+.|+|||+|+.+|.
T Consensus 24 gi~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999975
No 129
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.80 E-value=0.0015 Score=65.41 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCC-------cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSS-------GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~-------gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.|.++|..++|||+|+|.|++... +..+++. ..+|++.....- +. .+.|+||||+
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~-~gtT~~~~~~~~--------~~--~~~~~DtPG~ 190 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI-PGTTLDLIKIPL--------GN--GKKLYDTPGI 190 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC-CCeeeeeEEEec--------CC--CCEEEeCcCC
Confidence 588999999999999999998542 2233222 235666543221 11 3688999996
No 130
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.79 E-value=0.002 Score=62.17 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=39.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|+|+|+.++|||+|+|+|++.. |...+ ..|.|+-.+...+. .+|..+.+-++||+|.
T Consensus 6 i~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNE--FNLDS---KSTIGVEFATRSIQ---IDGKTIKAQIWDTAGQ 62 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence 7899999999999999999876 54322 23555533333332 1355577889999995
No 131
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.79 E-value=0.0017 Score=71.78 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=44.9
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCC----C--Ccc----------cccCC-CCCccceEEeeccccccccCCCCceEE
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGR----S--SGF----------QVAST-HRPCTKGLWLWSAPLKRTALDGTEYNL 130 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~----~--~gF----------~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v 130 (736)
++.+. |+|+||-|||||+|+|+|.+. . +.+ +-++| +=.+|.=..+-.+.......+|-+..|
T Consensus 15 ~G~Iy-IGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 15 QGDIY-IGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred CCcEE-EEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 46665 999999999999999999987 2 011 00011 001222233333332233345666789
Q ss_pred EEeecCCCcccC
Q 004698 131 LLLDSEGIDAYD 142 (736)
Q Consensus 131 ~llDteG~~~~~ 142 (736)
.|+||-|+++..
T Consensus 94 rlIDcvG~~v~G 105 (492)
T TIGR02836 94 RLVDCVGYTVKG 105 (492)
T ss_pred EEEECCCcccCC
Confidence 999999997644
No 132
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.79 E-value=1.7 Score=51.44 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 633 ~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
++.+..|-..+++.+.|+...|-.+-++ |+.+.-+.
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne-~~elt~~l 190 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNE-NMELTSAL 190 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh-hhHhhHHH
Confidence 3344445556666667777766666653 34443333
No 133
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=2.3 Score=52.47 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
+.+...|..+.+.++....++..++.-.+.+...+..+..+++.|.......++..++.....+...+-+..++..++..
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke 487 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE 487 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555566666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 698 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~ 698 (736)
+.....++..++.+++-+++|+..+..+.+.+..+- ..+...........++....++.+..++.+.+.|+.
T Consensus 488 l~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~-e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 488 LMPLLKQVNEARSELDVAESELDILLSRHETGLKKV-EELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 666666777777888888888877777777776654 222233333334455566667777777777665553
No 134
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=2.1 Score=51.84 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~ 594 (736)
..++.++..+.+...+.+..+.++.++.++...+.+.+..++++.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444556666666666666666666666666666666666533
No 135
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.77 E-value=0.0033 Score=69.39 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=49.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC---CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS---SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT 144 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~ 144 (736)
+.|+. |+|+|..|+|||+|+|.|.|-. .|-. ..|+-.+|...-.+..|.. | .|+|.|.||.|...-.
T Consensus 33 ~~~l~-IaV~G~sGsGKSSfINalrGl~~~d~~aA-~tGv~etT~~~~~Y~~p~~---p-----nv~lWDlPG~gt~~f~ 102 (376)
T PF05049_consen 33 NAPLN-IAVTGESGSGKSSFINALRGLGHEDEGAA-PTGVVETTMEPTPYPHPKF---P-----NVTLWDLPGIGTPNFP 102 (376)
T ss_dssp H--EE-EEEEESTTSSHHHHHHHHTT--TTSTTS---SSSHSCCTS-EEEE-SS----T-----TEEEEEE--GGGSS--
T ss_pred cCceE-EEEECCCCCCHHHHHHHHhCCCCCCcCcC-CCCCCcCCCCCeeCCCCCC---C-----CCeEEeCCCCCCCCCC
Confidence 35776 9999999999999999998743 2221 1122245666666655431 2 3788899999865432
Q ss_pred CccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698 145 GTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (736)
Q Consensus 145 ~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (736)
.+ .-+=..-.--=.+||.=+.+.+.++++.
T Consensus 103 ~~--~Yl~~~~~~~yD~fiii~s~rf~~ndv~ 132 (376)
T PF05049_consen 103 PE--EYLKEVKFYRYDFFIIISSERFTENDVQ 132 (376)
T ss_dssp HH--HHHHHTTGGG-SEEEEEESSS--HHHHH
T ss_pred HH--HHHHHccccccCEEEEEeCCCCchhhHH
Confidence 11 0000101111344565566777777765
No 136
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.77 E-value=0.0028 Score=69.07 Aligned_cols=58 Identities=33% Similarity=0.485 Sum_probs=41.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceE-EeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Gi-w~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.-|.|+|-+.+|||+|+|.|+|+.. -.+++.. ..|+|+ |+-.. ..+.|+||||+--.+
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~P-G~Tk~~q~i~~~-----------~~i~LlDtPGii~~~ 191 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRP-GTTKGIQWIKLD-----------DGIYLLDTPGIIPPK 191 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCC-ceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence 3499999999999999999999864 3333322 457776 55321 238999999986443
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.75 E-value=1.1 Score=53.56 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698 560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD 596 (736)
Q Consensus 560 e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e 596 (736)
+=++.+-..|+.++..+.+|...|+-+||-||.|.++
T Consensus 321 EmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 321 EMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555678888888888888888888888865543
No 138
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.75 E-value=0.0024 Score=61.40 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+.. |.. ....|.|+-.....+.. +|..+.+-++||+|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR--FVS---KYLPTIGIDYGVKKVSV---RNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceeEEEEEEEE---CCeEEEEEEEECCccH
Confidence 7899999999999999999876 432 22345555433322221 3566889999999963
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.75 E-value=0.0013 Score=60.74 Aligned_cols=57 Identities=28% Similarity=0.424 Sum_probs=38.9
Q ss_pred eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+|+.++|||+|+|.|.+.... +.....|. ++.+...+.. .+....+.++||+|...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~----~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV----PEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC----Ccccccch-hheeeEEEEE---CCEEEEEEEEecCChHH
Confidence 6899999999999999987632 22223343 6666554432 13346799999999753
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.75 E-value=0.0021 Score=62.11 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=38.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+|+|+|..++|||+|+|.|.+.. |... ....+|..+.....+.. .+....+.++||+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~--~~~~-~~~~~t~~~~~~~~~~~----~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN--VAAG-EAGGITQHIGAFEVPAE----VLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc--cccc-cCCCeEEeeccEEEecc----cCCcceEEEEeCCCcH
Confidence 59999999999999999999764 4332 11234444433222211 0234678899999964
No 141
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.74 E-value=0.66 Score=47.72 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhhhhHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK--------AMEDQVCSEIEVLKSRSTAAE 630 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~--------~~~~~~~~~i~~L~~k~~~~E 630 (736)
+.+++..+..++..+..+......+..+++....++..|..+.+..+...+ .....+..++..|+..+..++
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~ 111 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAE 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445555556666666666666666666644443332 222344444444555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 663 (736)
Q Consensus 631 ~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ka 663 (736)
..+..+..++..++..+.+++++.+.+..+.++
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554433
No 142
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.73 E-value=0.0086 Score=54.56 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=49.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCc-ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHH
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSG-FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF 152 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~g-F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IF 152 (736)
|.|+|+.++|||+|++.|++.... -.......+.|.++...... +....+.+.|+.|..... ..+-+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~g~~~~~-----~~~~~ 69 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-------GDRQSLQFWDFGGQEEFY-----SQHQF 69 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-------TEEEEEEEEEESSSHCHH-----CTSHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-------CCceEEEEEecCccceec-----ccccc
Confidence 679999999999999999987622 11233334445554433322 233458889999863211 11111
Q ss_pred HHhhhccceEEEccCCCCchHHhhhh
Q 004698 153 SLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 153 aLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
.+.--=.=++||++. +...++++
T Consensus 70 ~~~~~d~~ilv~D~s---~~~s~~~~ 92 (119)
T PF08477_consen 70 FLKKADAVILVYDLS---DPESLEYL 92 (119)
T ss_dssp HHHHSCEEEEEEECC---GHHHHHHH
T ss_pred hhhcCcEEEEEEcCC---ChHHHHHH
Confidence 233333345677654 34555554
No 143
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.73 E-value=0.0045 Score=66.19 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=66.2
Q ss_pred ceeeCHHHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceE
Q 004698 53 KFRMDPEAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYN 129 (736)
Q Consensus 53 ~l~l~~eAl~~L~~i---~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~ 129 (736)
.|..-.+|.+.|..+ +-..--|-|+|.+..|||+|++.|-+.. -.+.+= -=+||||.+-.--. ++ ..
T Consensus 147 ~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~Y-PFTTK~i~vGhfe~-----~~--~R 216 (346)
T COG1084 147 DLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPY-PFTTKGIHVGHFER-----GY--LR 216 (346)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCC-CccccceeEeeeec-----CC--ce
Confidence 344445666666653 4345567889999999999999999875 222211 12589999875321 12 35
Q ss_pred EEEeecCCCcccCCCCcc---chHHHHHhhhccceEEEcc
Q 004698 130 LLLLDSEGIDAYDQTGTY---STQIFSLAVLLSSMFIYNQ 166 (736)
Q Consensus 130 v~llDteG~~~~~~~~~~---d~~IFaLa~LLSS~~IyN~ 166 (736)
+=++||||+-+..-+.-+ ...|.||.- |-++++|=.
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h-l~~~IlF~~ 255 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRH-LAGVILFLF 255 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHH-hcCeEEEEE
Confidence 777899999544333333 456888854 677777743
No 144
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.73 E-value=0.43 Score=55.20 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------
Q 004698 521 RSIEDNMKLLKKQLEDSERYKSEYLKR-----------YDDAINDKKKLADDYTSRINNLQGENISLREKSS-------- 581 (736)
Q Consensus 521 es~e~e~~~lk~~Le~~e~~~~e~~k~-----------~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~-------- 581 (736)
+-++.++..++..+++++..+.+|+++ +...+.++...+..++.+...++...+.+...+.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~ 243 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLA 243 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence 334444455555555555555555432 2334444444444555555555554444444322
Q ss_pred -------HHHHHHHHHHHHHHHHHHHH
Q 004698 582 -------SLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 582 -------~L~~~le~lk~e~~e~~~~y 601 (736)
.+..++..++.+..++...|
T Consensus 244 ~~~~~~~~l~~~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 244 GSSVANSELDGRIEALEKQLDALRLRY 270 (498)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666555
No 145
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.72 E-value=0.0038 Score=66.98 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=41.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
+...|.|+|.+++|||+|+|.|.|... ..+++. -.+|+++ -|.. . + ..+.|+||||+..+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~-~g~T~~~-~~~~---~----~--~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNR-PGVTKAQ-QWIK---L----G--KGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCC-CCeEEEE-EEEE---e----C--CcEEEEECCCcCCCC
Confidence 345699999999999999999998752 344332 2356664 2321 1 1 137899999996443
No 146
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.70 E-value=0.61 Score=56.90 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 578 EKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 578 ~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
..++.|..++..++.+..++...|
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666777777777777777777
No 147
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.70 E-value=0.0027 Score=61.51 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=37.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
=|+|+|+.++|||+|+|+|.+.. |.- ....|.|+-.-...+ ..+|..+.+.++||+|.
T Consensus 5 kv~vvG~~~~GKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSGT--FSE---RQGNTIGVDFTMKTL---EIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhhCC--Ccc---cCCCccceEEEEEEE---EECCEEEEEEEEECCCh
Confidence 37899999999999999998654 422 123355543221111 12345578899999994
No 148
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.69 E-value=0.0016 Score=64.28 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=29.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLK 119 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~ 119 (736)
+|+|+||.++|||||||.+.| |.. |..-.||+-.+-+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG----F~~-----P~~G~i~i~g~d~t 64 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG----FET-----PASGEILINGVDHT 64 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh----ccC-----CCCceEEEcCeecC
Confidence 699999999999999999986 433 44567888765443
No 149
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.69 E-value=0.47 Score=47.14 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL----KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK 585 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~----k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~ 585 (736)
..+++.++.+.-.+...+..+..++..-+..-.... ..++.+...+...++.=..+...|...+.+.-.-+...+.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877555322211 1233444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 004698 586 TVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR------------LAAAREQALSAQEEVEEW 650 (736)
Q Consensus 586 ~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~------------~~~~~~q~~~~~~E~~e~ 650 (736)
.+..+..+...++... ++.+...+.....++.+.+.++.....+... ...........+.++..|
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544 2333333333333333333333333333222 334455566678888888
Q ss_pred HHHHHHHHHHH
Q 004698 651 KRKYGVAVREA 661 (736)
Q Consensus 651 ~~ky~~~~~e~ 661 (736)
++++..+..+.
T Consensus 165 ~rk~~~l~~~i 175 (177)
T PF13870_consen 165 ERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
No 150
>PRK11058 GTPase HflX; Provisional
Probab=96.68 E-value=0.0056 Score=69.31 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=38.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccc----cCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~----~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
+..|+|+|.+++|||+|+|.|.|.. +.+ +.|..+.+..+-+|. + ..++|+||.|+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~---------~--~~~~l~DTaG~ 255 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVAD---------V--GETVLADTVGF 255 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCC---------C--CeEEEEecCcc
Confidence 3468999999999999999999864 222 345555444443332 1 14678999998
No 151
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.67 E-value=0.73 Score=52.44 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (736)
Q Consensus 616 ~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~ 695 (736)
.+++.+++.++..+-.+..+-+-....++.++.++++..+..+.+....++.............++.++.++.++..+ .
T Consensus 260 ~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l-~ 338 (444)
T TIGR03017 260 KTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL-N 338 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333333333333333343444444555555555555544433333222222222222233333333333333333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698 696 EKEEEMKEKATKIEHAEQCLTTLRLELKVSFF 727 (736)
Q Consensus 696 e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~ 727 (736)
....++..++..++-++...+.+...+++...
T Consensus 339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 339 RQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345677777777777777777777766543
No 152
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.67 E-value=0.0029 Score=61.64 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=39.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
+.=|.|+|+.++|||+|+|++.+.. |.... +.|.|+-.+...+. .+|..+.+.++||+|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 3458999999999999999999765 43322 22444322211111 2355678899999994
No 153
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=2.5 Score=51.17 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=93.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHH
Q 004698 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ---KAMEDQVCSEIE-VLKSRSTAAEARLAAAREQALSAQ 644 (736)
Q Consensus 569 Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~---~~~~~~~~~~i~-~L~~k~~~~E~~~~~~~~q~~~~~ 644 (736)
.+-+...+...+..|...+..+..++..++..+...+.+. .-.+.+++.+|+ .-+++ ......+....+.....+
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r-~~~l~~l~~~~~ki~e~~ 341 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQR-NLALHVLQKVKDKIEEKK 341 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666666666666664443333 223446777777 33333 333444677888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH
Q 004698 645 EEVEEWKRKYGVAVREAKAALEKAAIVQE------------RTSKEMQQREDVLREEFSSTLAEKEE---EMKEKATKIE 709 (736)
Q Consensus 645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e------------~~~e~~~~~~~~l~~e~~~~~~e~~~---~~~~~~~k~~ 709 (736)
.|+++.+-||+.++.+++.+-.+.+.... ..-..+..|..=+|.+...++.-++. ....+|..|+
T Consensus 342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999888766666553222 12223345555566665555444332 2555666666
Q ss_pred HHHHHHhhHHHHhhhhhhhc
Q 004698 710 HAEQCLTTLRLELKVSFFDI 729 (736)
Q Consensus 710 ~~~~~~~~~~~~l~~~~~~~ 729 (736)
.++..++.++.++++=.-+|
T Consensus 422 ~~e~~l~~~~e~i~~l~~si 441 (1200)
T KOG0964|consen 422 DLESELKEKLEEIKELESSI 441 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 66666666666665544444
No 154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.65 E-value=0.0031 Score=59.44 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=37.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.++|+.++|||+|+|.|++.. |... ...|.|+-.-..-+.. ++..+.+.++||+|.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 59 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK--FDEN---YKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQ 59 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCc---cCCceeeeeEEEEEEE---CCEEEEEEEEecCCh
Confidence 7889999999999999999775 3322 1234444322221111 234578899999995
No 155
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.62 E-value=1.2 Score=52.65 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 581 SSLSKTVDSLKNEISDWKRKYDQVL 605 (736)
Q Consensus 581 ~~L~~~le~lk~e~~e~~~~yee~~ 605 (736)
..|...++.|++++..|..+++...
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQV 107 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666665433
No 156
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.62 E-value=0.0033 Score=60.41 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=38.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|++.. |... .+.|.|+-.-..++. .+|..+.+.++||+|..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK--FKED---SQHTIGVEFGSKIIR---VGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEECcchH
Confidence 6899999999999999999765 4332 233444433222221 13556788999999953
No 157
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.62 E-value=2.1 Score=49.81 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-H-HHhhhhHHHHHHHHHHHHH
Q 004698 562 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI-E-VLKSRSTAAEARLAAAREQ 639 (736)
Q Consensus 562 ~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i-~-~L~~k~~~~E~~~~~~~~q 639 (736)
+...+.....+...+...+..+...++..+.+..+++.++..++...-+..+.++... . .+...... ..+..+..+
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E 282 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQE 282 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHH
Confidence 4445566667777777888888888888888888888776665555544444444300 0 00000000 112334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 640 ALSAQEEVEEWKRKYGVAVREAKAALEKAA--------------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 705 (736)
Q Consensus 640 ~~~~~~E~~e~~~ky~~~~~e~kalle~~~--------------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~ 705 (736)
.++.++|+..+++..+++..+....-.+.. ..+...... +.++..+..++....++........+
T Consensus 283 ~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 283 RDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 444444444444444444443322222222 111111111 44444555555555555555555556
Q ss_pred HHHHHHHHHHhhHHHHhhhhh
Q 004698 706 TKIEHAEQCLTTLRLELKVSF 726 (736)
Q Consensus 706 ~k~~~~~~~~~~~~~~l~~~~ 726 (736)
.|+..-+.++.-+...+..+.
T Consensus 362 ~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 666665666666655555543
No 158
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.60 E-value=0.0034 Score=60.36 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=35.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.++|..++|||+|+|.|++.. +........+|..... ..+. .+| ..+.++||+|++.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~--~~~~---~~~--~~~~iiDtpG~~~ 62 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSID--VPFE---YDG--KKYTLIDTAGIRR 62 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCcee--eEEE---ECC--eeEEEEECCCCcc
Confidence 38999999999999999999874 2111111122221111 1111 123 3477899999864
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.60 E-value=0.0039 Score=60.57 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=33.6
Q ss_pred eeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 76 VCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+.++|||+|+|.|.|.. +.+++. +..++.|...|. + ...+.++||+|+.
T Consensus 1 iiG~~~~GKStll~~l~~~~--~~~~~~~~~t~~~~~~~~~~~--------~--~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK--PKVANYPFTTLEPNLGVVEVP--------D--GARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC--ccccCCCceeecCcceEEEcC--------C--CCeEEEEeccccc
Confidence 68999999999999999875 222221 112233332221 1 2568999999984
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.59 E-value=0.0069 Score=59.45 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|..++|||+|+|.|++..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~ 23 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVT 23 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999765
No 161
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.58 E-value=0.0036 Score=60.13 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=37.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|+|+|+.++|||+|+|++++.. |.. ...+.+......... -+|..+.+.++||+|..
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSY--FVT--DYDPTIEDSYTKQCE-----IDGQWAILDILDTAGQE 61 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCc--ccCCCccceEEEEEE-----ECCEEEEEEEEECCCCc
Confidence 37899999999999999999764 421 112222222221111 13555778899999954
No 162
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.58 E-value=0.5 Score=53.00 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye 602 (736)
+......++..+..+..++..++.++..++.++..++.++...+.+....+..++
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444555555555555555555555555555555444444443
No 163
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.58 E-value=0.0037 Score=60.03 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=37.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce--EEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G--iw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|+|++.. |.. ....|.| ...+..++ ++..+.+.++||+|.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~v~~-----~~~~~~~~i~D~~G~ 60 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE--FSE---NQESTIGAAFLTQTVNL-----DDTTVKFEIWDTAGQ 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceeEEEEEEEE-----CCEEEEEEEEeCCch
Confidence 7899999999999999999876 432 1123444 22222222 345678899999994
No 164
>PRK10698 phage shock protein PspA; Provisional
Probab=96.58 E-value=1.1 Score=46.28 Aligned_cols=147 Identities=15% Similarity=0.229 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHhh
Q 004698 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-KK-------LADDYTSRINNLQGENI 574 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l-kk-------~~e~~e~~~~~Le~k~~ 574 (736)
...+..++..+..++..+..+-+....++.+++..+....+|.++.+..+..= .. .-..+..+...|+..+.
T Consensus 30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~ 109 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVT 109 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666777777777778888888888888876666555421 11 22335556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 575 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 654 (736)
Q Consensus 575 sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky 654 (736)
........|..++..++.++.+++.+....+...+.. ..+.++...-+. -...++-+.+..+++|.
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A--~a~~~~~~~~~~------------~~~~~a~~~f~rmE~ki 175 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALMLRHQAA--SSSRDVRRQLDS------------GKLDEAMARFESFERRI 175 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhC------------CCcchHHHHHHHHHHHH
Confidence 7777777777777777777777776666555444322 222333311111 11234445566666666
Q ss_pred HHHHHHHHH
Q 004698 655 GVAVREAKA 663 (736)
Q Consensus 655 ~~~~~e~ka 663 (736)
+..+.++.+
T Consensus 176 ~~~Ea~aea 184 (222)
T PRK10698 176 DQMEAEAES 184 (222)
T ss_pred HHHHHHHhH
Confidence 666666644
No 165
>PRK00098 GTPase RsgA; Reviewed
Probab=96.57 E-value=0.0026 Score=68.69 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
++.++|+.++|||+|+|.|+|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57799999999999999999864
No 166
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.56 E-value=0.0037 Score=60.62 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+.. |.- .-..|.|+-....-+ .+++..+.+.++||+|..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS--FTS---AFVSTVGIDFKVKTV---FRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCceeeEEEEEEE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999865 532 112366654333222 134556889999999953
No 167
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.56 E-value=2.8 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHh
Q 004698 71 IGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
-.|+.|.|+.++|||+||+.+.
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3477899999999999999964
No 168
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.56 E-value=0.0036 Score=62.39 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|+|++.. |..++. ..|.|.-++...+. .+|..+.+-++||.|..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~--~~~~~~--~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR--FLVGPY--QNTIGAAFVAKRMV---VGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--cCCcCc--ccceeeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999765 654332 34555544443332 24566778899999964
No 169
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.55 E-value=0.0039 Score=60.51 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=39.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|++.+.. |.- ..+.|.|.-+....+. .+|..+.+.+.||+|.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VNGQKIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCcccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 6789999999999999999765 532 2234555443322221 2456688999999995
No 170
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.53 E-value=0.0044 Score=59.43 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|+|+|+.++|||+|+|+|++.. |.... ..|.|+-....-+ ..+|..+.+-++||+|.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~--~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK--FSEQY---KSTIGVDFKTKTI---EVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCh
Confidence 7899999999999999999876 43222 1233321111111 12355578889999995
No 171
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.52 E-value=1.7 Score=47.46 Aligned_cols=55 Identities=7% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~ 604 (736)
.++.....+-+.++.+...+...+.++...+..+.++...++.++..+-..|.+.
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql 163 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555677777777777777777777777777777777766666666433
No 172
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.52 E-value=0.18 Score=53.84 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=61.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (736)
Q Consensus 515 ~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~ 594 (736)
.|+.|+..++++...++.........-..|+..-+..|.+--+.+..+..+++.|...+..=.+.......++..|..++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333233333334444444455555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH----------HHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698 595 SDWKRKYDQVL----------TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (736)
Q Consensus 595 ~e~~~~yee~~----------~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~ 643 (736)
.++.++.++.. ...|.....+..++.+|++||....+.+.++++++...
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554443222 22233344556666666666666555555555544443
No 173
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.52 E-value=0.0081 Score=57.47 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=38.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+++|+.++|||+|+|+|++.. |. +...+.+...+.+.. ..+|..+.+.++||+|..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~--~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDE--FV--EDYEPTKADSYRKKV-----VLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--Cc--cccCCcchhhEEEEE-----EECCEEEEEEEEECCChh
Confidence 7899999999999999999765 32 122233333333321 124566889999999954
No 174
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.52 E-value=0.0026 Score=66.50 Aligned_cols=60 Identities=33% Similarity=0.464 Sum_probs=39.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC--CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.||. |-++|.++.|||.|+|.||+.. ..=.|+.++.+.|. .|.. -+| ..++|.||+|+++
T Consensus 38 ~pvn-vLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~--------~~~--~~l~lwDtPG~gd 99 (296)
T COG3596 38 EPVN-VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLS--------YDG--ENLVLWDTPGLGD 99 (296)
T ss_pred Ccee-EEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhh--------ccc--cceEEecCCCccc
Confidence 5765 6689999999999999999532 11224445444332 2222 133 5789999999964
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.51 E-value=0.0018 Score=64.76 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=57.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-----------cCC----CCCccceEEeeccccccccCCCCceEEEEe
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-----------AST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLL 133 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-----------~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~ll 133 (736)
+++-.|+|+|+..+|||+|++.|++......- ... ....|..++.+... .+.....+.|+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-----~~~~~~~i~~i 75 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-----KNENNRKITLI 75 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-----BTESSEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-----ccccccceeec
Confidence 36778999999999999999999965321110 000 12234333333221 01234789999
Q ss_pred ecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHH
Q 004698 134 DSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181 (736)
Q Consensus 134 DteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v 181 (736)
||||...+ ....+-++...=.-++|......++....+.+.+.
T Consensus 76 DtPG~~~f-----~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~ 118 (188)
T PF00009_consen 76 DTPGHEDF-----IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKIL 118 (188)
T ss_dssp EESSSHHH-----HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHH
T ss_pred ccccccce-----eecccceecccccceeeeecccccccccccccccc
Confidence 99995321 12334444332223356666655666666655443
No 176
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.51 E-value=0.87 Score=51.82 Aligned_cols=83 Identities=7% Similarity=0.111 Sum_probs=43.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhHH----------
Q 004698 519 KYRSIEDNMKLLKKQLEDSERYKSEYLKRY------------DDAINDKKKLADDYTSRINNLQGENISL---------- 576 (736)
Q Consensus 519 k~es~e~e~~~lk~~Le~~e~~~~e~~k~~------------e~~In~lkk~~e~~e~~~~~Le~k~~sl---------- 576 (736)
..+-++..+..+++.++.++..+..|++++ ...++++...+..+.++....+.+....
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVI 251 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhh
Confidence 345555666666666667777777776422 1222333333333333333332222111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 577 -REKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 577 -~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
..-+..|..++..++.+..+++..|
T Consensus 252 ~~~~i~~l~~~l~~le~~l~~l~~~y 277 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKLAELSQRL 277 (444)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1124567777777777777777777
No 177
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.51 E-value=0.0039 Score=67.66 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=44.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC--Ccc---cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF---~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-+.. |=|||+.|+|||+++|.|+|++ +++ ...+...+.|.-|-....-+ ..+|..+.+-++||||+|+
T Consensus 22 i~f~-im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l---~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFT-IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAEL---EEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceE-EEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeee---ecCCeEEEEEEeccCCccc
Confidence 3554 6789999999999999999972 222 12221112233333333222 2468889999999999975
No 178
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.50 E-value=0.0039 Score=68.79 Aligned_cols=56 Identities=34% Similarity=0.475 Sum_probs=39.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccc----ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ----VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~----~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.+..|+|+|.+.+|||+|+|.|.|.. +. .+.|..+.+.-+.+ ++| ..+.|+||.|+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~---------~~~--~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDL---------PDG--GEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEe---------CCC--ceEEEEecCcc
Confidence 55679999999999999999999875 22 23444454433322 223 46889999997
No 179
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.50 E-value=0.0056 Score=58.76 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=39.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|..++|||+|+|+|.+.. |.- ....|.|...-...+.. ...+..+.+.++||+|.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI--FTK---DYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCch
Confidence 7899999999999999999764 432 12345565443222222 11245688999999995
No 180
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.50 E-value=0.0049 Score=64.06 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=37.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|+++|+.++|||+|+|.|.|.. ..++. ++..++.|.+.|. | ..+-++||+|+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~---------~--~~i~l~DtpG~~ 58 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYK---------G--AKIQLLDLPGII 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEEC---------C--eEEEEEECCCcc
Confidence 47899999999999999999875 22221 1122345665442 2 467789999974
No 181
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.50 E-value=0.0039 Score=58.86 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|+|+|+.++|||+|+|+|.+.. |... ...|.|+-..... .| .+.+.++||+|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~------~~-~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FSED---TIPTVGFNMRKVT------KG-NVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CCcC---ccCCCCcceEEEE------EC-CEEEEEEECCCC
Confidence 7899999999999999999875 5321 1335555443211 12 277899999995
No 182
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.47 E-value=0.004 Score=62.29 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=38.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|++.+.. |..+.. +.|.|+-.-...+ ..+|..+.+.|+||+|-
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~--~~~~~~--~~t~~~~~~~~~~---~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGA--FLNGNF--IATVGIDFRNKVV---TVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCccCc--CCcccceeEEEEE---EECCEEEEEEEEeCCCc
Confidence 7889999999999999998765 543321 2344432222111 12455688999999994
No 183
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.46 E-value=1.3 Score=47.43 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=65.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645 (736)
Q Consensus 566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~ 645 (736)
...|+.|+..++++-..|+.+...++.+...+..+.++.+.+-=+....++.+|..|..-+..--+.+....++.-++..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777677666666554444566777777777555555567777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004698 646 EVEEWKRKYGVAVREA 661 (736)
Q Consensus 646 E~~e~~~ky~~~~~e~ 661 (736)
++.++.+|......+.
T Consensus 242 qivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 7777776666666554
No 184
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.46 E-value=1.6 Score=53.98 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhH----------HHH
Q 004698 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL---KNEISDWKRKYDQVLTKQKA----------MED 613 (736)
Q Consensus 547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l---k~e~~e~~~~yee~~~~~~~----------~~~ 613 (736)
-++..++.....+...+.++..++.++..+++++..+.+..+.+ ..+....++..++.....++ -..
T Consensus 491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 34455555555555555556666666666655555555555544 23344444444433333332 223
Q ss_pred HHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 614 QVCSEIEV-------LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 686 (736)
Q Consensus 614 ~~~~~i~~-------L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l 686 (736)
++..+|.. +.++++.+|+--....+.....+.+....+|.+..+.... +.++..+...+...+....++.-+
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~-~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEII-AELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhhhhHHHHH
Confidence 44555543 3345555555555566666667777777777777776644 666666777776677776666666
Q ss_pred HHHHHhhHHHH
Q 004698 687 REEFSSTLAEK 697 (736)
Q Consensus 687 ~~e~~~~~~e~ 697 (736)
.+ ++....|.
T Consensus 650 ~e-l~r~~~e~ 659 (1317)
T KOG0612|consen 650 EE-LKRENQER 659 (1317)
T ss_pred HH-HHHHHHHH
Confidence 66 44444443
No 185
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.87 Score=53.90 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~ 594 (736)
++.+..|..++........+...|+.++......++.|.++++.+|.+.
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666666666666666666666666666443
No 186
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.45 E-value=0.57 Score=54.20 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS 595 (736)
Q Consensus 520 ~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l----kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~ 595 (736)
-+......+++..++...+..+.+.+..+..=-+.. -.....+..+++.++.++..++.++..+...++.++....
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566788888888887777777654333211110 0111122233334444444444443333333333333222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q 004698 596 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE-------------AK 662 (736)
Q Consensus 596 e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e-------------~k 662 (736)
....... .........+..++.+++.++..+..+..+-+-+...++.++...+......+.. ..
T Consensus 236 ~~~~~~~---~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 312 (498)
T TIGR03007 236 GEEPVLL---AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVY 312 (498)
T ss_pred cCCCCcC---cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHH
Confidence 1000000 0000112244555556666555555565555555555555555555444332211 11
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698 663 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAE------KEEEMKEKATKIEHAEQCLTTLRLELKVS 725 (736)
Q Consensus 663 alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e------~~~~~~~~~~k~~~~~~~~~~~~~~l~~~ 725 (736)
..+.......+..++..+.+++.++.++..+..+ ...++..++..++.++.....+...+.++
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444455555555555555444444 33456667777776666666666666554
No 187
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.45 E-value=0.011 Score=65.84 Aligned_cols=89 Identities=25% Similarity=0.430 Sum_probs=53.0
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCccccc-----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC-C
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVA-----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT-G 145 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~-~ 145 (736)
-+|+|+|.+..|||+|.|+|.|+.. ++- -|..+ .-|.--|. | +.+.|+||.|++..+.+ -
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr-~y~~~~~~---------~--~~f~lIDTgGl~~~~~~~l 69 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDR-IYGDAEWL---------G--REFILIDTGGLDDGDEDEL 69 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCC-ccceeEEc---------C--ceEEEEECCCCCcCCchHH
Confidence 3699999999999999999999862 221 12222 22333332 2 34788999999754422 1
Q ss_pred cc---chHHHHHhhhccceE--EEccCCCCchHHhh
Q 004698 146 TY---STQIFSLAVLLSSMF--IYNQMGGIDESAID 176 (736)
Q Consensus 146 ~~---d~~IFaLa~LLSS~~--IyN~~g~i~e~~l~ 176 (736)
.. .....|+.- +.+. |.+..-.|+..|-.
T Consensus 70 ~~~i~~Qa~~Ai~e--ADvilfvVD~~~Git~~D~~ 103 (444)
T COG1160 70 QELIREQALIAIEE--ADVILFVVDGREGITPADEE 103 (444)
T ss_pred HHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHH
Confidence 11 223344444 5554 45555566776654
No 188
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.44 E-value=0.003 Score=66.17 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
++.++|+.+.|||+|+|.|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999986
No 189
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=3 Score=49.48 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHh
Q 004698 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLK 623 (736)
Q Consensus 547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~ 623 (736)
...+.|.+++...+...-.+..|+.+...++...+.+.+++..+...+...++.. .+.+...+...+...+++++++
T Consensus 507 ~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 507 KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777788888888888888888888888877777777766 5566777778888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 624 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 624 ~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
..|.+++..+.........+++|++.+++|+...-...
T Consensus 587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 587 EQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999998876654
No 190
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.43 E-value=0.0053 Score=60.48 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.|.++|..+.|||+|+|.|.+.. |...+....+|.++-+.. + + ..+.++||+|+
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~--~~~~~~~~~~T~~~~~~~--~-----~---~~~~~iDtpG~ 170 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKK--VAKVGNKPGVTKGIQWIK--I-----S---PGIYLLDTPGI 170 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCEEeeeEEEE--e-----c---CCEEEEECCCC
Confidence 57899999999999999999875 322122223566643321 1 1 23688999997
No 191
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.43 E-value=1.7 Score=46.40 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSS 581 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~ 581 (736)
+.+++++...+++.++...|-..+..+-....
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555544444
No 192
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.43 E-value=1.2 Score=44.52 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
+...+..++..++.+++....-+..+...+.+..+...+.-+. +-.++.....+++++..+..++...+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~-----------~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERG-----------MKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444444444433332 34556666677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004698 592 NEISDWKRKYDQVLTKQ 608 (736)
Q Consensus 592 ~e~~e~~~~yee~~~~~ 608 (736)
.-..+..++|++.+-+.
T Consensus 74 ~iaE~adrK~eEVarkL 90 (205)
T KOG1003|consen 74 HIAEKADRKYEEVARKL 90 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888776655
No 193
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.42 E-value=2.7 Score=54.61 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004698 504 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSER 539 (736)
Q Consensus 504 ~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~ 539 (736)
+-+..++..+..+..++..+.+++..+...+.....
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666655555555433
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.42 E-value=0.73 Score=54.28 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE 666 (736)
Q Consensus 621 ~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle 666 (736)
.|-.+|+.+++.+.....+......++.+|+++.+.+..+++.--+
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee 468 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEE 468 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777777777778888888888888887765444
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.41 E-value=1.2 Score=48.87 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004698 643 AQEEVEEWKRKYGVAVR 659 (736)
Q Consensus 643 ~~~E~~e~~~ky~~~~~ 659 (736)
+..|+..++.+|+.+..
T Consensus 274 t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEK 290 (325)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44566666666655543
No 196
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.40 E-value=0.0054 Score=59.37 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc--eEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~--Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++++.. |.-.. ..|. +++.|... .++..+.+-++||+|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG--YEPQQ---LSTYALTLYKHNAK-----FEGKTILVDFWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCCc---CCceeeEEEEEEEE-----ECCEEEEEEEEeCCCch
Confidence 6789999999999999998764 53221 1232 45555432 24666888899999953
No 197
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.39 E-value=0.00084 Score=82.18 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 693 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~ 693 (736)
.++.+++.|+..+..-++.-..+.+++..++.|+.+|+.||+.-....-..++.+-...++.+.+++..+..+.....++
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L 347 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL 347 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777666666678888999999999999999999997665445566666556666666665555555554444
No 198
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.39 E-value=0.0058 Score=59.37 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=40.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.=|.|+|+.++|||+|+|++++.. |... ...|.|+-.+...+. .+|..+.+.++||+|.
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCcC---cCCceeeEEEEEEEE---ECCeEEEEEEEeCCCh
Confidence 347899999999999999999765 5322 123556543333322 2466788999999995
No 199
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.39 E-value=0.0047 Score=59.47 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=36.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|+.++|||+|+|+|.+.. |.... .+.+.-.+- .++ ..++..+.+-++||+|..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~~--~~~~~--~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGH--FVDDY--DPTIEDSYR--KQI---EIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccc--CCchhhhEE--EEE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 43221 122211111 111 123456788899999954
No 200
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.38 E-value=0.0059 Score=59.12 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|+.++|||+|+|+|++.. |.... ..|.|.-.+..-+. .+|..+.+-++||+|..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKK--FSNQY---KATIGADFLTKEVT---VDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCcCc---CCccceEEEEEEEE---ECCEEEEEEEEeCCChH
Confidence 7899999999999999999875 43321 12333211111011 12445677899999953
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.37 E-value=3 Score=48.66 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI-SDWKRKYDQVLTKQKAMEDQVCSEI 619 (736)
Q Consensus 541 ~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~-~e~~~~yee~~~~~~~~~~~~~~~i 619 (736)
.++.++.+.+.|..+...+....-....++.....++.+...+...++.++... -+++.+ + ..+|...+.|-.++
T Consensus 514 Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlk-Q---dear~~~~~lvqqv 589 (961)
T KOG4673|consen 514 KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLK-Q---DEARERESMLVQQV 589 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-h---hHHHHHHHHHHHHH
Confidence 344557888888888888888888888888888999999988888888888733 222222 2 24556677888999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (736)
Q Consensus 620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~ 667 (736)
.+|+.+++..|..+ -++-+..+.|+.++.|.|+.+..+...+..+
T Consensus 590 ~dLR~~L~~~Eq~a---arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 590 EDLRQTLSKKEQQA---ARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999888888764 3455667789999999999998888665544
No 202
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.37 E-value=0.005 Score=59.08 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=37.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|++.+.. |.. ...|.+...... .+ ..+|..+.+-++||+|..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGI--FVE--KYDPTIEDSYRK--QI---EVDGQQCMLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--ccCCchhhhEEE--EE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999764 532 122323222222 12 124556778899999964
No 203
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.37 E-value=0.0048 Score=60.00 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|++.+.. |.... ..|.|+-.....+. .+|..+.+.+.||+|.
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~~--f~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDS--FNPSF---ISTIGIDFKIRTIE---LDGKKIKLQIWDTAGQ 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhCc--CCccc---ccCccceEEEEEEE---ECCEEEEEEEEeCCch
Confidence 7899999999999999999875 53321 23455433222221 1355578999999995
No 204
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.37 E-value=0.0044 Score=66.52 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=36.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCC-----C-CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST-----H-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-----~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
.+++++|+.++|||+|+|.|+|... +.+|.- . ...|....++..| ++ .+|+||||+..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~------~~----~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLP------GG----GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcC------CC----CEEEECCCCCcc
Confidence 3689999999999999999998631 122211 1 1234444443322 11 268999998543
No 205
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.36 E-value=0.0057 Score=59.20 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=37.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|++++.. |.... ..|.|+-.....+. .+|..+.+-++||+|.
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999765 54321 22444322111121 1355678899999994
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.34 E-value=0.77 Score=52.73 Aligned_cols=205 Identities=13% Similarity=0.175 Sum_probs=103.3
Q ss_pred cCCCchhHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 477 CHGPGKWQKLATFLQQSSEGP------ILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 550 (736)
Q Consensus 477 ~~Gp~K~~~L~~fLq~~~~~~------il~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~ 550 (736)
+.+|.....+.+||+...... =....+--..+.++.++.|..|+.-+.+.++...+.+...|--+++.+..+-.
T Consensus 78 iP~~~taa~i~eWles~~p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna 157 (861)
T KOG1899|consen 78 IPDPQTAARIAEWLESPSPSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA 157 (861)
T ss_pred CCCchHHHHHHHHHhccCCCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch
Confidence 345556666777776433110 00111222335566788888888777777776666665555554444332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH
Q 004698 551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 630 (736)
Q Consensus 551 ~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E 630 (736)
.-..++.++ -..+.||.+.-.+..+++.|+=.+-++.++..+...+. ..++.+.+++. +.|...++
T Consensus 158 tEEmLQqel----lsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~--------R~se~l~qevn--~~kv~e~~ 223 (861)
T KOG1899|consen 158 TEEMLQQEL----LSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL--------RLSENLMQEVN--QSKVGEVV 223 (861)
T ss_pred HHHHHHHHH----HhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH--------HhHHHHHHHHH--HHHHHHHH
Confidence 212221111 11144444444444444444444444444443333332 11233334444 45556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698 631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (736)
Q Consensus 631 ~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~ 695 (736)
..-.+++..+.+++-|.+-++.....-..+.+-++.++..-..-..+..-.|...|+..+.++..
T Consensus 224 ~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ 288 (861)
T KOG1899|consen 224 QERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMR 288 (861)
T ss_pred HHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHh
Confidence 66666666666666666666655555555566666666654444444444455555555555543
No 207
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.33 E-value=0.006 Score=58.20 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=35.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|+|.+.. |.- ...|.+...+... +. .+|..+.+-++||.|.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~~---~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH--FVD--EYDPTIEDSYRKQ--VV---IDGETCLLDILDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CcC--CcCCcchheEEEE--EE---ECCEEEEEEEEECCCC
Confidence 6899999999999999999765 422 1112222222221 11 1344566778999995
No 208
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.0057 Score=66.80 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCC----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRS----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|=|+|+.++|||+|+|.||++. .-+...+..-..|..|-....-+ .++|....+-++||||+|+
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i---ee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI---EENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred EEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee---cCCCeEEeeEEeccCCCcc
Confidence 6789999999999999999873 01111111122244443333222 4678889999999999974
No 209
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.31 E-value=0.0042 Score=62.29 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=42.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCC---------CCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+.-|+|+|..++|||+|+|+|++....|.-..++ ...|.|+=+....... ++..+.+.|+||+|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV---TYKDTKINIVDTPGHA 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---EECCEEEEEEECCCcH
Confidence 3468999999999999999999754445432211 1124555444332221 2345789999999964
No 210
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.31 E-value=0.0075 Score=61.63 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=41.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|..++|||+|+|+|.+.. |.- ....|.|+-.+...+.. +++..+.+.+.||.|.
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~--~~~---~~~~T~~~d~~~~~i~~--~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEG--FGK---SYKQTIGLDFFSKRVTL--PGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCC---CCCCceeEEEEEEEEEe--CCCCEEEEEEEECCCc
Confidence 6899999999999999999765 532 22457776655433322 2345688999999994
No 211
>PRK04213 GTP-binding protein; Provisional
Probab=96.30 E-value=0.0075 Score=60.58 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=36.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|+|+|..++|||+|+|.|.|.. |.++.. | +.+.... .+. .+ .+.++||+|++.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~--~-~~t~~~~--~~~----~~---~~~l~Dt~G~~~ 64 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK--VRVGKR--P-GVTRKPN--HYD----WG---DFILTDLPGFGF 64 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--CccCCC--C-ceeeCce--EEe----ec---ceEEEeCCcccc
Confidence 4468999999999999999999875 654432 2 1122111 111 12 478899999753
No 212
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=4.2 Score=49.57 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD---QVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (736)
Q Consensus 567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye---e~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~ 643 (736)
...+.+...+..++..+++.|..-+........-|+ +...+..+.-+.++..+..|....++-+..-..+.+|+..+
T Consensus 325 ~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~a 404 (1174)
T KOG0933|consen 325 NGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDA 404 (1174)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHH
Confidence 333444444444444444444444444444444442 22233333344556666666666666666555666666666
Q ss_pred HHHHHHHH
Q 004698 644 QEEVEEWK 651 (736)
Q Consensus 644 ~~E~~e~~ 651 (736)
+..+++..
T Consensus 405 K~~~~~~~ 412 (1174)
T KOG0933|consen 405 KITLSEAS 412 (1174)
T ss_pred HHHHHHHH
Confidence 66654443
No 213
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0062 Score=63.11 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|||+||.|+|||||||.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999865
No 214
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.28 E-value=0.0086 Score=58.44 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=41.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|++++.. |.-. ...|.|+......+.. +|..+.+-++||.|..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR--FPER---TEATIGVDFRERTVEI---DGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCc---cccceeEEEEEEEEEE---CCeEEEEEEEeCCChH
Confidence 458999999999999999998754 5321 2345565433322221 3556889999999954
No 215
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.26 E-value=0.0049 Score=65.94 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=36.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|=|+|..|+|||+|+|.|++..- +... +...+....+-+-...+.. ..+|..+.+-++||+|+|+
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l-~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSDI-ISEDSSIPPPSASISRTLEIEERTVEL-EENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEE-EETCEEEEEEEEEEC-CSS
T ss_pred EEEECCCCCCHHHHHHHHHhccc-ccccccccccccccccccceeeEEEEe-ccCCcceEEEEEeCCCccc
Confidence 56899999999999999998741 1111 0111112222222222222 2356778899999999974
No 216
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.26 E-value=0.018 Score=65.20 Aligned_cols=56 Identities=32% Similarity=0.614 Sum_probs=36.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcc--cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF--~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.|+|+|..++|||+|+|+|+|....+ ...+.+..+..+..-|. | ..+.|+||+|+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---------~--~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---------G--REFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---------C--eEEEEEECCCCC
Confidence 38999999999999999999876221 11111112223333332 2 358899999985
No 217
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.25 E-value=0.0084 Score=58.81 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=40.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccc-------cCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~-------~~~g~~~~v~llDteG~ 138 (736)
.=|.|+|+.++|||+|+|++.+.. |.-. ...|.|+......+... .-++..+.+-|+||+|.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 73 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK--FNPK---FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ 73 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCcc---CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh
Confidence 347899999999999999998765 5322 12355554433222111 11245688999999994
No 218
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.24 E-value=0.015 Score=57.62 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecC
Q 004698 58 PEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSE 136 (736)
Q Consensus 58 ~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDte 136 (736)
..+++.|.....+.. |.|+|+.++|||+|+|+|.+.. |. ..++..+ +.|...| + .+.+.++||+
T Consensus 7 ~~~~~~~~~~~~~~k-i~ilG~~~~GKStLi~~l~~~~--~~~~~~T~~~-~~~~i~~---------~--~~~~~l~D~~ 71 (190)
T cd00879 7 YNVLSSLGLYNKEAK-ILFLGLDNAGKTTLLHMLKDDR--LAQHVPTLHP-TSEELTI---------G--NIKFKTFDLG 71 (190)
T ss_pred HHHHHHhhcccCCCE-EEEECCCCCCHHHHHHHHhcCC--CcccCCccCc-ceEEEEE---------C--CEEEEEEECC
Confidence 345555543444444 5999999999999999999765 32 1222222 2233222 1 2568899999
Q ss_pred CCc
Q 004698 137 GID 139 (736)
Q Consensus 137 G~~ 139 (736)
|..
T Consensus 72 G~~ 74 (190)
T cd00879 72 GHE 74 (190)
T ss_pred CCH
Confidence 953
No 219
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.24 E-value=0.007 Score=58.09 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=36.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|++.. |... ...|.|.=.-...+. .++..+.+.|+||+|..
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDT--FDPD---LAATIGVDFKVKTLT---VDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCcc---cCCcccceEEEEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999765 4321 122333211110010 12445789999999953
No 220
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.24 E-value=0.012 Score=62.69 Aligned_cols=59 Identities=31% Similarity=0.361 Sum_probs=37.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+...|.|+|.+++|||+|+|.|.|.. ...+++. -.+|++. -|.. . +. .+.|+||||+-.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~-~~~~~~~-~g~T~~~-~~~~---~----~~--~~~l~DtPG~~~ 175 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK-VAKVGNR-PGVTKGQ-QWIK---L----SD--GLELLDTPGILW 175 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC-ccccCCC-CCeecce-EEEE---e----CC--CEEEEECCCccc
Confidence 34569999999999999999999864 1233332 1234442 2211 1 11 368999999853
No 221
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.24 E-value=0.0079 Score=61.50 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=41.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCC---CcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRS---SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|-|+|..+.|||+|.|.|+... ++-.++.. .-|.|.-|-.-...+ ..+|-+..+-++||+|||+
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi---eE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI---EEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred EEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee---eecceEEEEEEecCCCccc
Confidence 6678999999999999999542 11122211 223444444433332 2457778899999999974
No 222
>PRK11281 hypothetical protein; Provisional
Probab=96.23 E-value=4.8 Score=50.95 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY-LKRYD-DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 590 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~-~k~~e-~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l 590 (736)
...++.+++.+.+++....+.+++..+..... .+.+. ..+.+++..+.+.+.+..+.+.++..+..++..+....+..
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 44455555555555554444444322210000 01111 22244455555555555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 004698 591 KNEISDWKRKYDQVL 605 (736)
Q Consensus 591 k~e~~e~~~~yee~~ 605 (736)
+...++.+++-++.-
T Consensus 162 Q~~lsea~~RlqeI~ 176 (1113)
T PRK11281 162 QAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666566555554443
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.22 E-value=0.0074 Score=57.43 Aligned_cols=57 Identities=30% Similarity=0.420 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|.|++.. |.- ...+.+.-.+.+ .+. .++..+.+.++||+|..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~--~~~--~~~~~~~~~~~~--~~~---~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT--FVE--EYDPTIEDSYRK--TIV---VDGETYTLDILDTAGQE 58 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--CcCCChhHeEEE--EEE---ECCEEEEEEEEECCChH
Confidence 7899999999999999999765 322 222333222222 111 12445778899999953
No 224
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.20 E-value=0.0082 Score=58.56 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=39.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+++... |... ...|.|+-+....+. .++..+.+.++||.|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGE--FEKK---YVATLGVEVHPLDFH---TNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCCh
Confidence 7899999999999999998654 4321 234555543322221 24556889999999964
No 225
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.20 E-value=0.016 Score=56.31 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=36.2
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..++ -|+|+|+.++|||+|+|.|.|.. |.. ...|.|+-.- .+ ..+| ..+.++||+|.
T Consensus 12 ~~~~-~v~i~G~~g~GKStLl~~l~~~~--~~~----~~~t~g~~~~--~i---~~~~--~~~~~~D~~G~ 68 (173)
T cd04155 12 SEEP-RILILGLDNAGKTTILKQLASED--ISH----ITPTQGFNIK--TV---QSDG--FKLNVWDIGGQ 68 (173)
T ss_pred CCcc-EEEEEccCCCCHHHHHHHHhcCC--Ccc----cCCCCCcceE--EE---EECC--EEEEEEECCCC
Confidence 3444 39999999999999999999864 321 1224452111 00 0122 56788999995
No 226
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.19 E-value=0.009 Score=57.76 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=37.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|++.. |... ..+.....+....+ .+|..+.+.++||+|..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~--~~~~--~~~~~~~~~~~~~~-----~~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK--FPTE--YVPTVFDNYSATVT-----VDGKQVNLGLWDTAGQE 59 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEEEEE-----ECCEEEEEEEEeCCCcc
Confidence 6799999999999999999875 4221 11222222222222 23566889999999975
No 227
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.18 E-value=0.0077 Score=60.72 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=38.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEE--eeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLW--LWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw--~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.=|.|+|+.++|||+|+|+|++.. |.. .-..|.|+- +|..- .+|..+.+.|+||+|.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~-----~~~~~~~l~l~D~~G~ 65 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNT--FSG---SYITTIGVDFKIRTVE-----INGERVKLQIWDTAGQ 65 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---CcCccccceeEEEEEE-----ECCEEEEEEEEeCCCc
Confidence 348899999999999999999875 531 113355532 33221 1355678899999995
No 228
>PLN03118 Rab family protein; Provisional
Probab=96.17 E-value=0.0078 Score=61.20 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=39.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++. |.|+|+.++|||+|+|+|++.. |.. . ..|.|+-.+...+. .+|..+.+.|+||+|..
T Consensus 14 ~~k-v~ivG~~~vGKTsli~~l~~~~--~~~---~-~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFK-ILLIGDSGVGKSSLLVSFISSS--VED---L-APTIGVDFKIKQLT---VGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceE-EEEECcCCCCHHHHHHHHHhCC--CCC---c-CCCceeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 344 6699999999999999999865 421 1 23455432222221 23556789999999953
No 229
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.17 E-value=2.6 Score=46.09 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004698 556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 635 (736)
Q Consensus 556 kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~ 635 (736)
...++.+..+...|......+..-+..+.....+++.++..++..-.+.-+- =..++..++..+...+..+.+
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-------D~~eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-------DQEELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------CHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333221111 123333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004698 636 AREQALSAQEEVEEWKRKY 654 (736)
Q Consensus 636 ~~~q~~~~~~E~~e~~~ky 654 (736)
.++.+..++.+..+|+.+.
T Consensus 228 ~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 230
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.16 E-value=0.01 Score=60.44 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|..++|||+|+|+|++..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 231
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.15 E-value=0.0092 Score=60.94 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=40.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|+|++.. |... ...|.|+-.+...+.. .+|..+.+.+.||+|.
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~--~~~~---~~~ti~~d~~~~~i~~--~~~~~~~l~i~Dt~G~ 62 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGR--FAEV---SDPTVGVDFFSRLIEI--EPGVRIKLQLWDTAGQ 62 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCceeceEEEEEEEEE--CCCCEEEEEEEeCCcc
Confidence 7899999999999999999765 5322 2346665443322211 2456688999999995
No 232
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.15 E-value=0.023 Score=64.53 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=37.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.|+|+|..++|||+|+|+|.|....+ +.. .+.....+.+.|. | +.+.|+||+|+..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~-v~~~~~~t~d~~~~~~~~~---------~--~~~~liDT~G~~~ 61 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAI-VADTPGVTRDRIYGEAEWL---------G--REFILIDTGGIEP 61 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCCcccceEEEEEEC---------C--cEEEEEECCCCCC
Confidence 58999999999999999999876221 111 1112223444442 2 5689999999864
No 233
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.13 E-value=4 Score=47.79 Aligned_cols=136 Identities=10% Similarity=0.159 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r 579 (736)
..+.+. +++.+.|..++..-+.++..+.-.|.++++.....+ +...+.+...+..-+.+.++......-+......
T Consensus 233 ~E~n~k-Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~t 311 (786)
T PF05483_consen 233 KEVNDK-EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESEST 311 (786)
T ss_pred HHhhhH-HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 888999999999999999999999998888766654 3444556666666677777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698 580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 639 (736)
Q Consensus 580 ~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q 639 (736)
...|..+++...+.+.++...-+..+...+.....-...+++++.....+++.+..-..+
T Consensus 312 q~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr 371 (786)
T PF05483_consen 312 QKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQR 371 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888877777777666666666666666666666665554433333
No 234
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.13 E-value=3.1 Score=46.54 Aligned_cols=56 Identities=9% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
.+++.+|++++..+.+++.++...+.++..+..++..+...+..+..+..+-+..+
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777776654444444
No 235
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.13 E-value=0.0094 Score=56.82 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=36.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc-ceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT-KGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T-~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|+|+|+.++|||+|+|+|++.. |.- ...+.+ ..++-.. +. ..+..+.+.++||+|.
T Consensus 3 i~i~G~~~~GKStli~~l~~~~--~~~--~~~~~~~~~~~~~~--~~---~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK--FNE--KHESTTQASFFQKT--VN---IGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CcCCccceeEEEEE--EE---ECCEEEEEEEEECCch
Confidence 7899999999999999999765 422 111222 2222221 11 1245578899999994
No 236
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.13 E-value=0.0093 Score=58.00 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=38.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+++|+.++|||+|+|++.+.. |. .+..|.+...|.. .+. -++..+.+-++||+|...
T Consensus 4 i~liG~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV--FI--ESYDPTIEDSYRK--QVE---IDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEeCCCccc
Confidence 7899999999999999998665 42 2233333334322 221 134557888999999653
No 237
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.11 E-value=0.01 Score=58.31 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=36.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccc--ccCCC-CCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQ--VASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~--~~~~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|+.++|||+|+|+|++.. |. +.++. ...+..+++ ++..+.+.++||+|..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~----------~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRY----------KGQDYHLEIVDTAGQD 60 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEE----------CCEEEEEEEEECCChH
Confidence 6799999999999999999765 42 11221 112333332 2445778899999964
No 238
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.10 E-value=0.021 Score=55.02 Aligned_cols=55 Identities=36% Similarity=0.485 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|.++|..++|||+|+|.|.+.. ...++++.. +|+.+-+-.. + ..+.++||+|+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~-~t~~~~~~~~-------~---~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRH-SASTSPSPG-YTKGEQLVKI-------T---SKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCC-eeeeeEEEEc-------C---CCEEEEECcCC
Confidence 345999999999999999999753 234443332 3444322111 1 24788999995
No 239
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.09 E-value=0.011 Score=58.87 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.-.....+. .+|..+.+-++||+|..
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDE--FSES---TKSTIGVDFKIKTVY---IENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 7899999999999999999776 5321 123445322222221 24556788899999953
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.09 E-value=0.0089 Score=66.86 Aligned_cols=61 Identities=33% Similarity=0.501 Sum_probs=41.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..+. |+|+|++..|||.|||.|++... .+-...-.+|+.+-=-. + .-+| +.|.++||-|+-
T Consensus 216 ~G~k-vvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~--i---~i~G--~pv~l~DTAGiR 276 (454)
T COG0486 216 EGLK-VVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEED--I---NLNG--IPVRLVDTAGIR 276 (454)
T ss_pred cCce-EEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEE--E---EECC--EEEEEEecCCcc
Confidence 4565 78999999999999999999862 22223333455442211 1 1234 789999999984
No 241
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.08 E-value=0.0015 Score=79.92 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKTVD 588 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l---kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le 588 (736)
++..|..+.+..+..+..+.......+..+.+.+..+++..... ...+..++.++..|...++.-......|..++.
T Consensus 216 E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qls 295 (859)
T PF01576_consen 216 ENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLS 295 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444444444444333333333333333333333333333222 233344444444555555555556666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 589 SLKNEISDWKRKYDQVLTKQKAMED----QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (736)
Q Consensus 589 ~lk~e~~e~~~~yee~~~~~~~~~~----~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal 664 (736)
.+..++.+|+++|+..+...--..+ .+..++.+++..+..+...+..+.+....++.|+.|.....+.+.... +.
T Consensus 296 k~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~-~~ 374 (859)
T PF01576_consen 296 KLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA-AE 374 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 7778999999999776555322222 455566677777777777777777777777777777776666665543 55
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 004698 665 LEKAAIVQERTSKEMQQRED 684 (736)
Q Consensus 665 le~~~~~~e~~~e~~~~~~~ 684 (736)
|++....+++.+.+...+.+
T Consensus 375 LeKKqr~fDk~l~e~k~~~~ 394 (859)
T PF01576_consen 375 LEKKQRKFDKQLAEWKAKVE 394 (859)
T ss_dssp --------------------
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 55555555544444444433
No 242
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.08 E-value=0.012 Score=59.39 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=39.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|+|++.. |.- ....|.|.-.....+.. .+|..+.+.|+||.|.
T Consensus 3 ivivG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~d~~~~~v~~--~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGI--FSQ---HYKATIGVDFALKVIEW--DPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCceeEEEEEEEEEE--CCCCEEEEEEEECCCc
Confidence 6799999999999999999764 432 12346665332221211 1256788999999995
No 243
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.07 E-value=0.01 Score=57.45 Aligned_cols=57 Identities=26% Similarity=0.485 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++++++.. |. + ...+.+..+..+ ++ ..+|..+.+-++||+|..
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~--~~-~-~~~~t~~~~~~~--~~---~~~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR--FI-G-EYDPNLESLYSR--QV---TIDGEQVSLEILDTAGQQ 58 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCc--cc-c-ccCCChHHhceE--EE---EECCEEEEEEEEECCCCc
Confidence 7899999999999999998654 42 1 111222112111 11 124556788899999964
No 244
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.07 E-value=0.013 Score=58.50 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEeeCCCCCChhHHHHHHhCC
Q 004698 74 VSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~ 94 (736)
|+|+|..++|||+|+|.|.+.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhc
Confidence 789999999999999999974
No 245
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.06 E-value=1.7 Score=42.95 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004698 531 KKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE 593 (736)
Q Consensus 531 k~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e 593 (736)
...+...-+....|.+-.+...+.....-..+..+..++..++.+++.||+.|+++|+-.++=
T Consensus 24 e~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 24 EDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555556667899999999999999999998766543
No 246
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.06 E-value=4.5 Score=51.06 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
.++.+..-++.+....|..+.++....+.++......+.+++++..+...+.+..+
T Consensus 177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555566666666665544444433
No 247
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.05 E-value=0.013 Score=58.23 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=36.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|.+.. |.. .++..+ |.+...+ .++.+.++||+|..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~--~~~~~~t~~~-~~~~~~~-----------~~~~~~~~D~~G~~ 72 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDR--LAQHQPTQHP-TSEELAI-----------GNIKFTTFDLGGHQ 72 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CcccCCcccc-ceEEEEE-----------CCEEEEEEECCCCH
Confidence 347899999999999999999864 432 223222 3333322 12678899999964
No 248
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.05 E-value=0.03 Score=63.31 Aligned_cols=60 Identities=30% Similarity=0.476 Sum_probs=36.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.-|+|+|..++|||+|+|.|+|... ..+++ ....|... ...++. .+| ..+.|+||+|+..
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~-~~gtt~~~--~~~~~~---~~~--~~~~liDT~G~~~ 232 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEER-VIVSD-IAGTTRDS--IDIPFE---RNG--KKYLLIDTAGIRR 232 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCe-eecCC-CCCceECc--EeEEEE---ECC--cEEEEEECCCccc
Confidence 4589999999999999999998751 11111 11122211 111111 123 3588999999854
No 249
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.03 E-value=0.011 Score=67.44 Aligned_cols=61 Identities=30% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.++. |+|+|++++|||+|+|.|++....| + +....+|.-+... .+. .+| +.+.++||+|+.
T Consensus 202 ~g~k-VvIvG~~nvGKSSLiN~L~~~~~ai-v-s~~pgtTrd~~~~--~i~---~~g--~~v~l~DTaG~~ 262 (442)
T TIGR00450 202 DGFK-LAIVGSPNVGKSSLLNALLKQDRAI-V-SDIKGTTRDVVEG--DFE---LNG--ILIKLLDTAGIR 262 (442)
T ss_pred cCCE-EEEECCCCCcHHHHHHHHhCCCCcc-c-CCCCCcEEEEEEE--EEE---ECC--EEEEEeeCCCcc
Confidence 3443 7899999999999999999875222 1 2222334332211 111 123 467899999974
No 250
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.03 E-value=0.011 Score=57.74 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=37.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++++.+.. |.- ...|++...+.. .+ ..+|..+.+.++||.|..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQ--FPE--VYVPTVFENYVA--DI---EVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC--CCCCccccceEE--EE---EECCEEEEEEEEeCCCch
Confidence 7899999999999999999865 532 112222222222 22 124566789999999964
No 251
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.01 E-value=4.4 Score=47.20 Aligned_cols=108 Identities=17% Similarity=0.317 Sum_probs=67.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR--------------INNLQGENISLRE 578 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~--------------~~~Le~k~~sl~~ 578 (736)
......+.......++.++..++..+.++.+|+.++...+....+.++.+... ...|..+.+.+.+
T Consensus 209 ~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~e 288 (511)
T PF09787_consen 209 YIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQE 288 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHH
Confidence 34455567778889999999999999999999977777777776666666661 3345555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698 579 KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE 620 (736)
Q Consensus 579 r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~ 620 (736)
.+..|..+++.++.+..+............+.....++..+.
T Consensus 289 e~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~ 330 (511)
T PF09787_consen 289 EIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLE 330 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544433333333333333333
No 252
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.00 E-value=1.4 Score=50.64 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=9.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQL 534 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~L 534 (736)
...++.+...++.....+...+
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 253
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.00 E-value=0.01 Score=67.67 Aligned_cols=58 Identities=36% Similarity=0.493 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.|+|+|.+++|||+|+|.|+|....+ ++ .....|..+..... ..+| ..+.++||+|+.
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~~a~-v~-~~~gtT~d~~~~~i-----~~~g--~~i~l~DT~G~~ 274 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEERAI-VT-DIAGTTRDVIEEHI-----NLDG--IPLRLIDTAGIR 274 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-cC-CCCCcccccEEEEE-----EECC--eEEEEEeCCCCC
Confidence 58999999999999999999875222 11 12223333222111 1123 457899999974
No 254
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.99 E-value=1.1 Score=44.41 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS-- 691 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~-- 691 (736)
++..++....+||+-+|-.+.-+++.+.++..|= ..+.+..+.+++........+...-.+++.|+.+..
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er--------~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rL 132 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKER--------NAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRL 132 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555551 122222233333333333455666677888886654
Q ss_pred -hhHHHHHHHHHHHHHHHHHHH
Q 004698 692 -STLAEKEEEMKEKATKIEHAE 712 (736)
Q Consensus 692 -~~~~e~~~~~~~~~~k~~~~~ 712 (736)
....-++.+|+++-.|+..-+
T Consensus 133 t~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 133 TATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777899888887655
No 255
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.99 E-value=1.9 Score=42.97 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=74.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
...|+..++.+++.-..+...+....+.+...+ +..++++.+++.....++.+...|-.+...++..-+.|...
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~ 103 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE 103 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444443333333322222 45688888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 004698 587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR 632 (736)
Q Consensus 587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~ 632 (736)
++.+..+...+....+.. ++...++..+.+.|+.++...|..
T Consensus 104 i~~Lqeen~kl~~e~~~l----k~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGL----KKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHhHHHHhhhhH----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888887776666555432 333445555556666655554444
No 256
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.99 E-value=0.013 Score=55.79 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=34.7
Q ss_pred eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|+|..++|||+|+|.|.|.. |.++.. ..+|....... +. -+| ..+.++||+|+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~-~~~t~~~~~~~--~~---~~~--~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNW-PGVTVEKKEGR--FK---LGG--KEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCC-CCcccccceEE--Ee---eCC--eEEEEEECCCcccc
Confidence 68999999999999999874 443321 12233222111 10 012 46889999998643
No 257
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.97 E-value=1.5 Score=52.47 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (736)
Q Consensus 568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~ 647 (736)
.|+.++..+..++..|...|..++.+.......|.+.....+.+...+..++..+...++.-++++..++..+..+..-+
T Consensus 356 iLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 356 ILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777777776666666666655555555555555555554444444445555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004698 648 EEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 648 ~e~~~ky~~~~~e~kalle~~~ 669 (736)
.|-..+...+..+.-+.-+..+
T Consensus 436 ~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 436 GESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 258
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.97 E-value=0.013 Score=56.99 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=37.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|.|+|+.++|||+|+|++.+.. |.-. ..|.+...|.- .+. .++..+.+-++||+|.+..
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~--~~~~--~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDA--FPEE--YVPTVFDHYAV--SVT---VGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEE--EEE---ECCEEEEEEEEeCCCcccc
Confidence 6899999999999999999765 5321 12222223322 221 2355567789999996543
No 259
>PRK01156 chromosome segregation protein; Provisional
Probab=95.96 E-value=6.7 Score=48.92 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004698 700 EMKEKATKIEHAEQCLT 716 (736)
Q Consensus 700 ~~~~~~~k~~~~~~~~~ 716 (736)
+++++..++....+.+.
T Consensus 417 ~~~~l~~~i~~l~~~i~ 433 (895)
T PRK01156 417 KLQDISSKVSSLNQRIR 433 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 260
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.95 E-value=0.014 Score=56.63 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccccc--CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVA--STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~--~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|+|.+.. |.-. ++....|..+.+ ++..+.+.++||+|.+
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEE--FPENVPRVLPEITIPADV----------TPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccCCCcccceEeeeee----------cCCeEEEEEEeCCCch
Confidence 6789999999999999998764 4211 111111222211 3456789999999964
No 261
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=95.94 E-value=0.012 Score=64.63 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=39.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++=|+++|.+.+|||+|||.|.+.. ..+++ |+...+.|+..|. ++ ..+++.||+|+.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~--------~~--~~~~i~D~PGli 217 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVD--------DY--KSFVIADIPGLI 217 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeC--------CC--cEEEEEeCCCcc
Confidence 5569999999999999999999753 22222 2222345666552 12 458899999983
No 262
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.94 E-value=0.016 Score=55.47 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=35.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+.. |.- . ..|.|+-..... .+..+.+.++||+|..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~--~~~---~-~~t~~~~~~~~~------~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE--LVT---T-IPTVGFNVEMLQ------LEKHLSLTVWDVGGQE 55 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--ccc---c-cCccCcceEEEE------eCCceEEEEEECCCCH
Confidence 6789999999999999999875 421 1 224443221111 1234789999999964
No 263
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.93 E-value=0.0072 Score=64.47 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=36.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC-----CC-CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS-----TH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~-----~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
+..++|..|.|||+|+|+|++.. ...++. +. +-+|.-.=|..-|. +| +++|||||.++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----gG-----~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLGRGRHTTTHVELFPLPG-----GG-----WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCCCCCCccceEEEEEcCC-----CC-----EEEeCCCCCcc
Confidence 45589999999999999999742 122221 11 12345555554331 23 67899998644
No 264
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.91 E-value=0.048 Score=62.73 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=36.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc----eEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~----Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..-|+|+|..++|||+|+|.|+|.. +...+.....|. +.|.+ +| ..+.|+||+|+.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~--~~~~s~~~gtT~d~~~~~~~~---------~~--~~~~l~DTaG~~ 270 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEE--RSVVDDVAGTTVDPVDSLIEL---------GG--KTWRFVDTAGLR 270 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC--cccccCCCCccCCcceEEEEE---------CC--EEEEEEECCCcc
Confidence 3568999999999999999999875 222122222222 22322 23 346789999974
No 265
>PTZ00258 GTP-binding protein; Provisional
Probab=95.91 E-value=0.011 Score=65.87 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=39.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccc-----cccCC-CCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK-----RTALD-GTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~-----~~~~~-g~~~~v~llDteG~~ 139 (736)
...-|+|+|.+.+|||+|+|.|.+.. -.++ .|..| ..|+..|..+-. ...|. -....+.|+||+|+-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p-~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDP-NTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccc-eEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 33359999999999999999997764 1222 22233 447765542110 00000 012348999999984
No 266
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.90 E-value=0.014 Score=56.61 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=39.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++++++.. |...+ ..|.|+-....++. .+|..+.+-+.||.|..
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNE--FHSSH---ISTIGVDFKMKTIE---VDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 7899999999999999999765 64322 23555433222222 13556788899999853
No 267
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.90 E-value=0.017 Score=55.81 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=39.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|++.|.+.. |.-+. ..|.|+-.-...+ ..+|..+.+.++||+|..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~---~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTV---EIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCcH
Confidence 356789999999999999999998643 32221 1233321111111 123555778899999953
No 268
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.88 E-value=0.016 Score=56.11 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=36.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|..++|||+|+|++++.. |... ..|.+..... ..+ ..++..+.+.+.||+|..
T Consensus 4 v~~vG~~~vGKTsli~~~~~~~--f~~~--~~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGT--FRES--YIPTIEDTYR--QVI---SCSKNICTLQITDTTGSH 60 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--cCCcchheEE--EEE---EECCEEEEEEEEECCCCC
Confidence 7899999999999999999765 5322 1122111111 111 112345778899999964
No 269
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.88 E-value=0.012 Score=57.33 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|++.+.. |.... .+ |.+--... .+ .-+|..+.+.++||+|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~--~~-~~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDY--VP-TVFENYSA-DV---EVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCC--CC-cEEeeeeE-EE---EECCEEEEEEEEECCCCc
Confidence 5799999999999999999865 53221 12 22221111 11 124566789999999964
No 270
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.88 E-value=0.017 Score=66.39 Aligned_cols=77 Identities=30% Similarity=0.513 Sum_probs=45.4
Q ss_pred eeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEE
Q 004698 54 FRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLL 132 (736)
Q Consensus 54 l~l~~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~l 132 (736)
..++.+-+..|...+ .+...|+|+|..++|||+|+|+|+|... +.+.+. ...|...-.+.. ..+| ..+.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~-~gvT~d~~~~~~-----~~~~--~~~~l 90 (472)
T PRK03003 20 WELDDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDV-PGVTRDRVSYDA-----EWNG--RRFTV 90 (472)
T ss_pred cccchhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCC-CCCCEeeEEEEE-----EECC--cEEEE
Confidence 556666665555222 3445799999999999999999998641 222221 112222111110 0123 35788
Q ss_pred eecCCCc
Q 004698 133 LDSEGID 139 (736)
Q Consensus 133 lDteG~~ 139 (736)
+||+|+.
T Consensus 91 ~DT~G~~ 97 (472)
T PRK03003 91 VDTGGWE 97 (472)
T ss_pred EeCCCcC
Confidence 9999975
No 271
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.87 E-value=0.029 Score=54.10 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=35.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|+++... |. +...|.+...... .+. .+|..+.+-++||+|..
T Consensus 4 i~~~G~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGI--FV--EKYDPTIEDSYRK--QVE---VDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEECCCcc
Confidence 7899999999999999998543 42 1122322222111 111 13556778899999964
No 272
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.85 E-value=0.043 Score=62.28 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=36.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc----eEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~----Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|+|+|..++|||+|+|.|+|... +.+++. ...|. ..|.| +| ..+.|+||+|+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~-~gtt~~~~~~~~~~---------~~--~~~~lvDT~G~~~ 233 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEER-VIVSDI-AGTTRDSIDTPFER---------DG--QKYTLIDTAGIRR 233 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc-eeecCC-CCceEEEEEEEEEE---------CC--eeEEEEECCCCCC
Confidence 35699999999999999999998752 222221 11221 22222 23 4578899999753
No 273
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.85 E-value=0.018 Score=56.59 Aligned_cols=56 Identities=23% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..-|.++|+.++|||+|+|+|.+.. |. +. ..|.|.-+. .+. ...+.+.++||+|..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~-~~---~~t~~~~~~--~~~-----~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV-HT---SPTIGSNVE--EIV-----YKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC-Cc---CCccccceE--EEE-----ECCeEEEEEECCCCH
Confidence 3457899999999999999998654 32 11 223333221 111 123679999999964
No 274
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.85 E-value=5.6 Score=47.06 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee 603 (736)
+.+.+..+..|+.-+++...++..|..+-+..+..+.+--+..+.
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455556666666666666666666666655444443333333
No 275
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.84 E-value=6.1 Score=47.44 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------HHHHHHHHHHHHHH------H
Q 004698 612 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE----EVEEWKRKYG-----------VAVREAKAALEKAA------I 670 (736)
Q Consensus 612 ~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~----E~~e~~~ky~-----------~~~~e~kalle~~~------~ 670 (736)
.+.+..+|--|++-+++=-+.++++|--+.+.|. =++-+|+||+ .+.+|.|++-|.|+ .
T Consensus 585 ~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRa 664 (717)
T PF09730_consen 585 KEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRA 664 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666776665555555555544444333 2567899997 47889999999999 6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 004698 671 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL 722 (736)
Q Consensus 671 ~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l 722 (736)
.+..+|++...+++.+..+++.+-+|+ |-++.=|+-++++-=.|.-+|
T Consensus 665 mFa~RCdEYvtQldemqrqL~aAEdEK----KTLNsLLRmAIQQKLaLTQRL 712 (717)
T PF09730_consen 665 MFAARCDEYVTQLDEMQRQLAAAEDEK----KTLNSLLRMAIQQKLALTQRL 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999998887 788888888876543333333
No 276
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.21 Score=58.20 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
....-|.|.|...+|||++.|.++-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~ 131 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLH 131 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHH
Confidence 4556799999999999999999883
No 277
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.81 E-value=0.02 Score=54.73 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+.. |.... . ..|.|+-... + .+..+.+.++||+|..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~--~~~~~-~-~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPEN--AQSQI-I-VPTVGFNVES--F-----EKGNLSFTAFDMSGQG 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccC--CCcce-e-cCccccceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999999753 21111 1 1234431111 0 0124678899999953
No 278
>PLN03110 Rab GTPase; Provisional
Probab=95.79 E-value=0.016 Score=59.43 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=42.3
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..=|.|+|+.++|||+|+++|.+.. |... ...|.|+-.+...+.. +|..+.+.|+||.|.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~--~~~~---~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE--FCLE---SKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQ 71 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeEEEEEEEEEE---CCEEEEEEEEECCCc
Confidence 3348899999999999999999865 5432 2346666544433322 355678899999994
No 279
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.79 E-value=0.012 Score=56.74 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=35.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.+...... .....-..|.|+-.....+ + +..+.++||+|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~ 61 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-----G--NARLKFWDLGGQE 61 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-----C--CEEEEEEECCCCh
Confidence 67899999999999999987431100 0011112233433322111 1 3678999999964
No 280
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=95.77 E-value=0.018 Score=55.37 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++++.. |.- ...|.+....... + ..+|..+.+-|+||+|..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGT--FIE--KYDPTIEDFYRKE--I---EVDSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCCchhheEEEE--E---EECCEEEEEEEEECCCcc
Confidence 7899999999999999998754 432 2223222232221 1 124556778899999964
No 281
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.73 E-value=0.039 Score=58.46 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|..++|||+|+|+|++..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~ 23 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYAT 23 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998643
No 282
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.73 E-value=0.03 Score=56.65 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=52.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC--------CcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS--------SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~--------~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.-|+|+|...+|||+|+++|++.. .++.+.. ......+|+=+-....... ..+..+.|+||+|...+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~~~- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE---TANRHYAHVDCPGHADY- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec---CCCeEEEEEECcCHHHH-
Confidence 349999999999999999998642 1111110 0111133443333222211 12356889999996321
Q ss_pred CCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
....+.+++..=.-++|......+.......+
T Consensus 79 ----~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~ 110 (195)
T cd01884 79 ----IKNMITGAAQMDGAILVVSATDGPMPQTREHL 110 (195)
T ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH
Confidence 12335555543334556665555555444433
No 283
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.72 E-value=0.019 Score=56.74 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=38.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|++.. |.-. ...|.|.-.... + ..++|..+.+.+.||+|..
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~--~~~~---~~~t~~~~~~~~-i--~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGK--FPEE---YVPTVFENYVTN-I--QGPNGKIIELALWDTAGQE 60 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCC---CCCeeeeeeEEE-E--EecCCcEEEEEEEECCCch
Confidence 7899999999999999999765 5321 122333322211 1 1233667889999999953
No 284
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.69 E-value=1.1 Score=51.38 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=16.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004698 514 SSLMLKYRSIEDNMKLLKKQLEDSERY 540 (736)
Q Consensus 514 ~~L~~k~es~e~e~~~lk~~Le~~e~~ 540 (736)
..++++...++..+..++.++...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666766666666666554443
No 285
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.69 E-value=3.5 Score=49.92 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004698 523 IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY- 601 (736)
Q Consensus 523 ~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y- 601 (736)
+++.+..+...|++..+.+.-.+.-.+.-|. +.+......+++-...++.++..+.+++..+..|...+.+..
T Consensus 43 ~e~r~~hld~aLkec~~qlr~~ree~eq~i~------~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~ 116 (769)
T PF05911_consen 43 LEDRVSHLDGALKECMRQLRQVREEQEQKIH------EAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQ 116 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555566666666666655554444444444 334444455666666667777777777777777777776655
Q ss_pred --HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Q 004698 602 --DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-----IVQE- 673 (736)
Q Consensus 602 --ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-----~~~e- 673 (736)
+..+...+.....+..++..|+.|+..+|-.+++++-++....+|+ .+..+.|..--+++ .+.|
T Consensus 117 ~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel--------eir~~E~~~~~~~ae~a~kqhle~ 188 (769)
T PF05911_consen 117 EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL--------EIRNEEREYSRRAAEAASKQHLES 188 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455556666667777888888888888888888888888777775 22222223323333 2233
Q ss_pred -HhhHHHHHHHHHHHHHHH
Q 004698 674 -RTSKEMQQREDVLREEFS 691 (736)
Q Consensus 674 -~~~e~~~~~~~~l~~e~~ 691 (736)
+.+-.++++..+||.-++
T Consensus 189 vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 189 VKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 445555666666665544
No 286
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.68 E-value=0.61 Score=43.41 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE 638 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~ 638 (736)
++.+.+.+..++.++.++.+++..|...=+.+..|+..+...-++.-. ..+....++.++++|+.||.++=+.++.-.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 455555555666666666666666666666666666665555554432 3344567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004698 639 QALSAQEEVEEWKRKYGVAVRE 660 (736)
Q Consensus 639 q~~~~~~E~~e~~~ky~~~~~e 660 (736)
+.+.++..+.|+|.-|..-+.+
T Consensus 97 ~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876653
No 287
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.65 E-value=5.5 Score=45.57 Aligned_cols=129 Identities=14% Similarity=0.201 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 524 EDNMKLLKKQLEDSERYKSEYL-KRYDDAINDKKKLADDYTSRI-------NNLQGENISLREKSSSLSKTVDSLKNEIS 595 (736)
Q Consensus 524 e~e~~~lk~~Le~~e~~~~e~~-k~~e~~In~lkk~~e~~e~~~-------~~Le~k~~sl~~r~~~L~~~le~lk~e~~ 595 (736)
+..+..++.++......+.... ...++.++.++..++++..-+ ...+.....+.+-+...+.+-+.|+.+++
T Consensus 254 d~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie 333 (570)
T COG4477 254 DSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIE 333 (570)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777666666664 566666666666665554433 56777788888999999999999999999
Q ss_pred HHHHHH---HHHHHHhhHHHH---HHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 596 DWKRKY---DQVLTKQKAMED---QVCSEIEVLKS-------RSTAAEARLAAAREQALSAQEEVEEWKR 652 (736)
Q Consensus 596 e~~~~y---ee~~~~~~~~~~---~~~~~i~~L~~-------k~~~~E~~~~~~~~q~~~~~~E~~e~~~ 652 (736)
.+++.| +..+...++-.. ++.+.+.++.. .|+.+...+.....++...+++-.+...
T Consensus 334 ~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e 403 (570)
T COG4477 334 RVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQE 403 (570)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999 444444443222 33333333333 4555555555555555555554433333
No 288
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.65 E-value=0.025 Score=54.09 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=35.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|..++|||+|+|++.+.. +.- ...|.|+-.-..+ ...+.+.++||+|..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~--~~~----~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~ 54 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE--VVT----TIPTIGFNVETVE-------YKNVSFTVWDVGGQD 54 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCC----CCCCcCcceEEEE-------ECCEEEEEEECCCCh
Confidence 6899999999999999999886 321 1224443221111 123678999999954
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.64 E-value=0.011 Score=60.76 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|||||||||.|-|-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999987654
No 290
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.64 E-value=0.014 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|..++|||+|+|+|.+..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 6899999999999999999875
No 291
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.63 E-value=0.014 Score=64.69 Aligned_cols=57 Identities=33% Similarity=0.386 Sum_probs=36.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCc----ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSG----FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~g----F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.++|.+++|||+|+|.|++...+ +.+++. -.+|.++- +. |+ ++ .+.++||||+..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~~-~~-~~-----~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDLI-EI-PL-----DD---GHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeEE-EE-Ee-----CC---CCEEEECCCCCC
Confidence 5889999999999999999986432 333322 22355532 21 11 11 257899999853
No 292
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=7 Score=46.54 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004698 527 MKLLKKQLEDSERYKSE 543 (736)
Q Consensus 527 ~~~lk~~Le~~e~~~~e 543 (736)
+..+....++.++....
T Consensus 432 ~~~~~~~~e~Lqk~~~~ 448 (698)
T KOG0978|consen 432 IRQVEELSEELQKKEKN 448 (698)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 293
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.59 E-value=0.02 Score=58.89 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=36.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce--EEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G--iw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|.+.+.. |.... -..|.| ....... .+|..+.+.++||+|..
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~--~~~~~--~~~t~~~~~~~~~i~-----~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGE--YDDHA--YDASGDDDTYERTVS-----VDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--cCccC--cCCCccccceEEEEE-----ECCEEEEEEEEeCCCcc
Confidence 7899999999999999997654 43111 112222 2222211 24556789999999965
No 294
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.59 E-value=0.023 Score=55.76 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=40.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|+|++++.. |.-. -..|.|.-....-+ ..+|..+.+-+.||+|..
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~--f~~~---~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDV--FDKN---YKATIGVDFEMERF---EILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEE---EECCEEEEEEEEeCCChH
Confidence 6799999999999999999875 6321 13355544332222 124666889999999953
No 295
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.57 E-value=0.031 Score=67.10 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=54.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccch
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYST 149 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~ 149 (736)
+..+|+|+|....|||+|+|.|.+.. |..+. ....|..+..+..++. .++..+.+.|+||+|...+. .+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e-~~GiTq~i~~~~v~~~---~~~~~~kItfiDTPGhe~F~-----~m 311 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKE-AGGITQKIGAYEVEFE---YKDENQKIVFLDTPGHEAFS-----SM 311 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcc--Ccccc-CCccccccceEEEEEE---ecCCceEEEEEECCcHHHHH-----HH
Confidence 34579999999999999999998765 33211 1112222222221221 12345789999999964321 22
Q ss_pred HHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 150 QIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 150 ~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
+...+...=.-++||.....+..+..+.+
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I 340 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAI 340 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHH
Confidence 33233322223566766555555555444
No 296
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.56 E-value=0.064 Score=64.85 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=36.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc----ceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T----~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|+|+|..++|||+|+|.|++....+ .+...++| .+.|.| +|. .+.|+||+|+.
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~---------~~~--~~~liDTaG~~ 509 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEI---------DGE--DWLFIDTAGIK 509 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEE---------CCC--EEEEEECCCcc
Confidence 468999999999999999999876322 11111222 234444 233 46689999974
No 297
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.56 E-value=0.022 Score=57.28 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|.+++.. |.- .++......+.+.+ +|..+.+.++||+|..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~--~~~~~~~t~~~~~~~~~~~---------~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT--FEPKYRRTVEEMHRKEYEV---------GGVSLTLDILDTSGSY 58 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCccCCCchhhheeEEEEE---------CCEEEEEEEEECCCch
Confidence 6799999999999999999865 422 11211111112222 2445778899999954
No 298
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.53 E-value=0.019 Score=56.09 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=36.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|+.++|||+|+|+|.+.. |. .. ..|.|+-... +. .+ .+.+.++||+|..
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~--~~---~~-~~t~g~~~~~--~~---~~--~~~l~l~D~~G~~ 69 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGED--ID---TI-SPTLGFQIKT--LE---YE--GYKLNIWDVGGQK 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCC--CC---Cc-CCccccceEE--EE---EC--CEEEEEEECCCCH
Confidence 46699999999999999999873 32 12 2355632221 11 12 3678999999954
No 299
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.52 E-value=0.023 Score=61.84 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=40.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeecc--ccccc----c------CCC-CceEEEEeecC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSA--PLKRT----A------LDG-TEYNLLLLDSE 136 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~--p~~~~----~------~~g-~~~~v~llDte 136 (736)
|+|+|.+++|||+|+|+|.+.. +.+++ |..| +.|+-.+.. |..+. . .+| ..+.+-++||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p-~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDP-NVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccc-eeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 6899999999999999999875 33322 2233 556655432 22110 1 123 33678999999
Q ss_pred CC
Q 004698 137 GI 138 (736)
Q Consensus 137 G~ 138 (736)
|+
T Consensus 78 Gl 79 (318)
T cd01899 78 GL 79 (318)
T ss_pred CC
Confidence 98
No 300
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=95.52 E-value=0.02 Score=65.66 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++-|+++|.+.+|||+|+|.|.+.. ..+++ |..| ..|++-+. ...+.|.||+|+-
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P-~lGvv~~~-----------~~~f~laDtPGli 217 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVP-NLGVVQAG-----------DTRFTVADVPGLI 217 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccc-eEEEEEEC-----------CeEEEEEECCCCc
Confidence 5679999999999999999999764 23322 2222 34555432 2468899999983
No 301
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=95.51 E-value=0.05 Score=59.60 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=39.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++=|+|+|.+.+|||+|+|.|.+.. ..+++ ++...+.|+.-+. + ...+.|+||+|+.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~--------~--~~~~~i~D~PGli 216 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVD--------D--GRSFVIADIPGLI 216 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeC--------C--ceEEEEEeCCCcc
Confidence 5679999999999999999999764 22221 2223355665431 1 2568899999984
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.51 E-value=0.018 Score=61.36 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=39.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccc---cccCCCC---ceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK---RTALDGT---EYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~---~~~~~g~---~~~v~llDteG~~ 139 (736)
|+|+|.+.+|||+|+|.|.|... .++ .|..| ..|++.+..+-. ....++. ...+.|+||+|+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p-~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhc-eeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 68999999999999999998752 222 22233 347776643210 0000011 1348899999984
No 303
>PRK13796 GTPase YqeH; Provisional
Probab=95.50 E-value=0.018 Score=63.91 Aligned_cols=55 Identities=31% Similarity=0.376 Sum_probs=35.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcc----cccCCCCCccceE-EeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGF----QVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF----~~~~~~~~~T~Gi-w~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|.++.|||+|+|.|++...|- .+++. -.+|.++ |+ |+ .+| ..|+||||+.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~-pGTT~~~~~~---~l----~~~----~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRF-PGTTLDKIEI---PL----DDG----SFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCC-CCccceeEEE---Ec----CCC----cEEEECCCcc
Confidence 46789999999999999999754332 22222 2245553 33 12 122 4789999984
No 304
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.48 E-value=0.022 Score=58.07 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=40.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
=|+|+|+.++|||+|+|+++... |.- ....|.|+-+....+. .++..+.+-+.||.|.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGE--FEK---KYIPTLGVEVHPLKFY---TNCGPICFNVWDTAGQ 68 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCc
Confidence 48999999999999998765433 322 1234667666554442 2455688999999985
No 305
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.45 E-value=0.025 Score=55.59 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=37.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++.+.. |.- .. ..|.|--.. ..+ ..+|..+.+-++||.|..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~--f~~--~~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHS--FPD--YH-DPTIEDAYK-QQA---RIDNEPALLDILDTAGQA 61 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCC--Cc-CCcccceEE-EEE---EECCEEEEEEEEeCCCch
Confidence 7899999999999999999764 531 11 223342111 112 124667889999999964
No 306
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=5.9 Score=45.45 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~ 589 (736)
+......+...+.+...+..+...+..++...+.+...+.-.- ..+.-.....+...+...+.....+.....+.+..
T Consensus 187 ~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~ 264 (458)
T COG3206 187 EAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD--AARGQLLSEQQLSALNTQLQSARARLAQAEARLAS 264 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666667777777777777777666653222111 00001111223334444444444444444444444
Q ss_pred HHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 590 LKNEISDWKRKY--DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (736)
Q Consensus 590 lk~e~~e~~~~y--ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~ 667 (736)
++.......... -+.++.. ..+.+.++...++....++-.+....+-++..++.++.+.+.....-..+.-+-..-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~s~--~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~ 342 (458)
T COG3206 265 LLQLLPLGREAAALREVLESP--TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPN 342 (458)
T ss_pred HHHhhcccccchhhhHHhccH--HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 444444433211 0111100 233333444444444444444555666666666666655555444444333222222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhc
Q 004698 668 AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDI 729 (736)
Q Consensus 668 ~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~ 729 (736)
.....++.....+.+..+++.+.+.+= ....++.+++.+++-...-+.+++.+.++..-.+
T Consensus 343 ~~~~l~~~~~~L~~~~~~l~~~~~~~~-~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 343 ELALLEQQEAALEKELAQLKGRLSKLP-KLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223333444444444444444444332 2335577777777777777777777766655443
No 307
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.44 E-value=9.2 Score=46.74 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERY---KSEYLKRYDDAINDKKKLADDYTSRI----------NNLQGENISL 576 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~---~~e~~k~~e~~In~lkk~~e~~e~~~----------~~Le~k~~sl 576 (736)
.++...|..+++.+++.+..+.+++-+.+.. +..-...++..+....+-++....+. .++......+
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el 486 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEEL 486 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555778888888888887777666554433 22222333333333333332221111 1222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 577 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 656 (736)
Q Consensus 577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~ 656 (736)
..++..|.+-|.....+++.|-.......++.+.. ..+++.+..||..+++++...++.-.++.+++.-++--
T Consensus 487 ~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~----~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t--- 559 (1195)
T KOG4643|consen 487 LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTC----DIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT--- 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---
Confidence 22223333333333333333333333333322221 12223444455566666555555555555554333221
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698 657 AVREAKAALEKAAIVQERTSKEMQQREDVLR 687 (736)
Q Consensus 657 ~~~e~kalle~~~~~~e~~~e~~~~~~~~l~ 687 (736)
.+-.++|||.+...+....+...=.++|.
T Consensus 560 --~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 560 --SQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred --hHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 25668999999888866666666555555
No 308
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.44 E-value=2.6 Score=40.35 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLED 536 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~ 536 (736)
..+...++.++.+++.+++.+...++.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~ 42 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKEC 42 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHH
Confidence 455555555666666665555555544
No 309
>PLN03108 Rab family protein; Provisional
Probab=95.39 E-value=0.023 Score=57.89 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=36.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|+.++|||+|+|+|.+.. |...+ ..|.|+-.....+. .+|..+.+-++||.|.
T Consensus 9 ivivG~~gvGKStLi~~l~~~~--~~~~~---~~ti~~~~~~~~i~---~~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 9 YIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDNKPIKLQIWDTAGQ 65 (210)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCCC---CCCccceEEEEEEE---ECCEEEEEEEEeCCCc
Confidence 7899999999999999999765 53321 12333222111111 1355577889999985
No 310
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.39 E-value=0.057 Score=55.80 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=50.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC-C--------CCCccceEEeeccccccc-------cCCCCceEEEEeecCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-T--------HRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEG 137 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~--------~~~~T~Giw~w~~p~~~~-------~~~g~~~~v~llDteG 137 (736)
|+|+|...+|||+|++.|+.....+.-.. + ..-..+||=+-+.++... ..+|.++.+.|+||+|
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG 82 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPG 82 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCC
Confidence 78999999999999999986542221100 0 001123333332222110 1245678899999999
Q ss_pred CcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (736)
Q Consensus 138 ~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (736)
...+. .....++...=.-++||.....+..
T Consensus 83 ~~~f~-----~~~~~~l~~aD~~ilVvD~~~g~~~ 112 (222)
T cd01885 83 HVDFS-----SEVTAALRLCDGALVVVDAVEGVCV 112 (222)
T ss_pred ccccH-----HHHHHHHHhcCeeEEEEECCCCCCH
Confidence 64321 1223333332233567776554443
No 311
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.39 E-value=0.051 Score=55.46 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|+|+|..++|||+|+++|++..
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998654
No 312
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.38 E-value=10 Score=47.80 Aligned_cols=270 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCcchhHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004698 445 ERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIE 524 (736)
Q Consensus 445 e~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~~Gp~K~~~L~~fLq~~~~~~il~~~~~l~~~i~~e~~~L~~k~es~e 524 (736)
|.-+.+.|......+.++...++++..+-+-. .-+-+.-++.|. -...+.|..-.-..-+....-++.
T Consensus 879 e~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~-----------~~~~~~~~~ki~-~l~~~~dg~l~~~~~~~~~~~~~~ 946 (1320)
T PLN03188 879 EMALEEFCTKQASEITQLNRLVQQYKHERECN-----------AIIGQTREDKII-RLESLMDGVLSKEDFLEEELASLM 946 (1320)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh-----------HHHhhhhhhhHH-HHhhhcccccchhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 525 DNMKLLKKQLEDS-------------ERYKSEYLKRYD--------DAINDKKKLADDYTSRINNLQGENISLREKSSSL 583 (736)
Q Consensus 525 ~e~~~lk~~Le~~-------------e~~~~e~~k~~e--------~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L 583 (736)
.+-..+++.+++. +..++.|+..|+ ++|.+++..+..+..-......+...+-...-.+
T Consensus 947 ~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~ 1026 (1320)
T PLN03188 947 HEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSC 1026 (1320)
T ss_pred hhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhc
Q ss_pred -------------------HHHHHHHHHHHHHHHHHH----HHH---HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698 584 -------------------SKTVDSLKNEISDWKRKY----DQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 637 (736)
Q Consensus 584 -------------------~~~le~lk~e~~e~~~~y----ee~---~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~ 637 (736)
+..|+..+....+...++ ++. +...|..++.++.+++.=+.=.-.+.+.+.-+-
T Consensus 1027 ~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am 1106 (1320)
T PLN03188 1027 EPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAM 1106 (1320)
T ss_pred CccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 638 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE------------RTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 705 (736)
Q Consensus 638 ~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e------------~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~ 705 (736)
.=--.-=+...|+..||..+..+.|.-.|-...+.. |=+..+++++.+||.|-.---.-.-.|.|-++
T Consensus 1107 ~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~ 1186 (1320)
T PLN03188 1107 EGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQ 1186 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHH---HHHhhHHHHhhhhh
Q 004698 706 TKIEHAE---QCLTTLRLELKVSF 726 (736)
Q Consensus 706 ~k~~~~~---~~~~~~~~~l~~~~ 726 (736)
..|+.+- +-.-.|+-+|+|+.
T Consensus 1187 ~qlrdtaeav~aagellvrl~eae 1210 (1320)
T PLN03188 1187 AQLRDTAEAVQAAGELLVRLKEAE 1210 (1320)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
No 313
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=95.38 E-value=0.045 Score=61.90 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=39.3
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++-|+++|.+.+|||+|||.|.+.. ..+++ ++...+-|++.+. + ...++|.||+|+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~--------~--~~~~~laD~PGli 217 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETD--------D--GRSFVMADIPGLI 217 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEe--------C--CceEEEEECCCCc
Confidence 5689999999999999999999865 22322 1112244554442 1 2468999999984
No 314
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=8.4 Score=45.76 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004698 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL 641 (736)
Q Consensus 565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~ 641 (736)
.+.-+..+...++.++..|..++-.|-..+.+.+-.. ++.+...++-.+.-.++|+.|+. |+......+.
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqa-------rikE~q~kl~ 503 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQA-------RIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3344555555555555555555555555555554433 33333333333333344444444 3333334444
Q ss_pred HHHHHHHHHHHH
Q 004698 642 SAQEEVEEWKRK 653 (736)
Q Consensus 642 ~~~~E~~e~~~k 653 (736)
.+--|-.+|.++
T Consensus 504 ~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 504 KLAPEKQELNHQ 515 (1118)
T ss_pred hhhhHHHHHHHH
Confidence 444444444443
No 315
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=95.34 E-value=0.04 Score=58.61 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=48.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCc-ccccC----------CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSG-FQVAS----------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~g-F~~~~----------~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
|+|+|..++|||+|.|.|+..... -.+|. ...-..+||=+-....... ..++.+.|+||+|...+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHHH
Confidence 789999999999999999843210 01110 0011223443332221111 123678899999964321
Q ss_pred CCCccchHHHHHhhhccceEEEccCCCCchH
Q 004698 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDES 173 (736)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~ 173 (736)
..+.-++...=.-++|......+...
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~~g~~~~ 104 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAVAGVEPQ 104 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECCCCCCHH
Confidence 12333444433345566655555443
No 316
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=11 Score=46.63 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhc
Q 004698 375 PPEEVALGEAHEAAVQKALAVYNAG 399 (736)
Q Consensus 375 p~~e~~L~~~h~~~~~~Al~~F~~~ 399 (736)
-++.++|......+...+...|.+.
T Consensus 159 K~EYeelK~E~~kAE~~t~~~~~kk 183 (1141)
T KOG0018|consen 159 KPEYEELKYEMAKAEETTTGNYKKK 183 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3566888888999999888888765
No 317
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.28 E-value=8.5 Score=45.41 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
...+.....+...+..+.++...+..+...++..|
T Consensus 302 ~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 302 KYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666777777777777777777777777
No 318
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=95.28 E-value=0.062 Score=56.43 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=37.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|++++.. |.-. ..|.+..+.... + .-+|+.+.+-++||.|..
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~--f~~~--y~pTi~d~~~k~--~---~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGR--FEEQ--YTPTIEDFHRKL--Y---SIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCC--CCCC--CCCChhHhEEEE--E---EECCEEEEEEEEECCCCh
Confidence 7899999999999999999765 5421 112221122111 1 124666788899999954
No 319
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.27 E-value=8 Score=45.03 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=125.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
+...+..+++.++.++..+...++..+....+++..|+++..-...++.-+..++...+..+-.++.++..|..++....
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46667788899999999999999999999999999888888888777777777777777777777777777776665544
Q ss_pred HHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHH
Q 004698 592 NEISD----WKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA----RLAAAREQALSAQEEVEEWKRK------YGVA 657 (736)
Q Consensus 592 ~e~~e----~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~----~~~~~~~q~~~~~~E~~e~~~k------y~~~ 657 (736)
..... .-......+++.-.+..++...|..++.-.....+ .+++..+++....+++.++++| |+.+
T Consensus 270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeI 349 (629)
T KOG0963|consen 270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEI 349 (629)
T ss_pred hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 22111 11111122222211122333333322221111111 1555555566666666666554 7777
Q ss_pred HHHHHHHHHHHH---------------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004698 658 VREAKAALEKAA---------------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 719 (736)
Q Consensus 658 ~~e~kalle~~~---------------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~ 719 (736)
..|.+.| +++ .-.|+.+=+++.++..--+.++..-...+..+.....|.++.....+...
T Consensus 350 K~ELsiL--k~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~k 424 (629)
T KOG0963|consen 350 KKELSIL--KAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQK 424 (629)
T ss_pred HHHHHHH--HHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHH
Confidence 7777555 333 22345555666666666666666666666667777777777666555543
No 320
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.24 E-value=0.028 Score=54.78 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+++|.+.. |.- . ...|.|..... .++..+.+.++||.|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~--~~~--~-~~pt~g~~~~~-------i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--SLE--S-VVPTTGFNSVA-------IPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Ccc--c-ccccCCcceEE-------EeeCCeEEEEEECCCCc
Confidence 6799999999999999999764 431 1 12345543211 12345789999999853
No 321
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.24 E-value=0.039 Score=60.95 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeecccccc-----ccCCC-CceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKR-----TALDG-TEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~-----~~~~g-~~~~v~llDteG~~ 139 (736)
-|+|+|.+.+|||+|+|.|.|... .++ .|..| ..|+.-+..+-.. ..|.. ....+.|+||+|+-
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p-~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--eecccccccccc-eEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 489999999999999999998751 222 22233 4566655432100 01110 11348899999984
No 322
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.23 E-value=0.029 Score=57.95 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=36.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEeecCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEG 137 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG 137 (736)
.|-.+|+|+|+.++|||+|+|.|++...+-.+ ....| +.+++. . +..+.++||+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-----~~~~g~i~i~~~-------~--~~~i~~vDtPg 92 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-----SDIKGPITVVTG-------K--KRRLTFIECPN 92 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-----ccccccEEEEec-------C--CceEEEEeCCc
Confidence 34457999999999999999999976322111 12233 455431 1 24578999997
No 323
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.23 E-value=0.022 Score=56.77 Aligned_cols=56 Identities=25% Similarity=0.205 Sum_probs=36.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.|+|..++|||+|+|+|.+.. |.-. . +.|.|.-.... + ..+|..+.+-++||+|.
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~--f~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~ 57 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH--FVET--Y-DPTIEDSYRKQ-V---VVDGQPCMLEVLDTAGQ 57 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcc--C-CCchHhhEEEE-E---EECCEEEEEEEEECCCc
Confidence 6789999999999999998654 5321 1 22333222111 1 12456678889999995
No 324
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.22 E-value=0.033 Score=62.46 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEee------------ccccccccCCCC-ceEEEEeecC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLW------------SAPLKRTALDGT-EYNLLLLDSE 136 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w------------~~p~~~~~~~g~-~~~v~llDte 136 (736)
-|+|+|.+.+|||+|+|.|.+.. +.+++ ++...+.|+-.- +.|.....++|. .+.+-|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 38999999999999999999875 44322 122234565221 122211012332 2567899999
Q ss_pred CCc
Q 004698 137 GID 139 (736)
Q Consensus 137 G~~ 139 (736)
|+-
T Consensus 81 Gl~ 83 (396)
T PRK09602 81 GLV 83 (396)
T ss_pred CcC
Confidence 983
No 325
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.21 E-value=0.022 Score=54.67 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=42.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++.|.+.. |.- ....|.|+-....++.. ++..+.+-+.||.|..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE--FPE---NYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--TTS---SSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSG
T ss_pred EEEECCCCCCHHHHHHHHHhhc--ccc---ccccccccccccccccc---cccccccccccccccc
Confidence 6799999999999999998764 642 22336666655555433 3667889999999853
No 326
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.12 E-value=5.5 Score=42.38 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004698 635 AAREQALSAQEEVEEWKRKYGVA 657 (736)
Q Consensus 635 ~~~~q~~~~~~E~~e~~~ky~~~ 657 (736)
.+.+.+..++..+.|+++.|+.-
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555555555555443
No 327
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.12 E-value=0.082 Score=56.19 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-.|+|+|..++|||+|+|.|+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45999999999999999999854
No 328
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.11 E-value=0.035 Score=67.31 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=40.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCC---CccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~---~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.|+++|..++|||+|.|.|.|.. +.+|+... ....|.+.| .+..+.++||+|..+..
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~-----------~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFST-----------TDHQVTLVDLPGTYSLT 64 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEc-----------CceEEEEEECCCccccc
Confidence 48999999999999999999875 34544311 112344433 23568899999987654
No 329
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.08 E-value=9.7 Score=45.00 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 004698 555 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS-----DWK-RKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 628 (736)
Q Consensus 555 lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~-----e~~-~~yee~~~~~~~~~~~~~~~i~~L~~k~~~ 628 (736)
....++.+.++.++++.-++.-+.|.-....-+.++.+-.. ++. ...++-.....+.++.+-.++=+|++|.+.
T Consensus 388 ~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~ 467 (1480)
T COG3096 388 AELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSM 467 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 35566888888888888888888877777776666653221 111 112444444555566666666778888887
Q ss_pred HHHHH
Q 004698 629 AEARL 633 (736)
Q Consensus 629 ~E~~~ 633 (736)
+++..
T Consensus 468 s~AA~ 472 (1480)
T COG3096 468 AQAAH 472 (1480)
T ss_pred HHHHH
Confidence 77763
No 330
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=95.08 E-value=0.047 Score=54.17 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=38.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEe--eccccccccCCCCceEEEEeecCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWL--WSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~--w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
++. |.++|..++|||+|+|++.+.. |. ++ ..|.|+-. +..++ .++..+.+.+.||.|.
T Consensus 3 ~~k-v~~vG~~~~GKTsli~~~~~~~--~~--~~--~~t~~~~~~~~~~~~----~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 3 SLH-IVMLGLDSAGKTTVLYRLKFNE--FV--NT--VPTKGFNTEKIKVSL----GNSKGITFHFWDVGGQ 62 (183)
T ss_pred ceE-EEEECCCCCCHHHHHHHHhcCC--cC--Cc--CCccccceeEEEeec----cCCCceEEEEEECCCc
Confidence 344 6788999999999999998754 42 11 23445322 22221 2345678999999995
No 331
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.07 E-value=0.055 Score=56.45 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=48.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCC----------cccccCCC-CCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSS----------GFQVASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~----------gF~~~~~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
|+|+|..++|||+|.|+|+.... |-.+.... ...++|+=+-...... ...++.+.++||+|...+.
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccchH
Confidence 78999999999999999986431 11111100 0112232221111111 1234678999999975321
Q ss_pred CCCccchHHHHHhhhccceEEEccCCCCc
Q 004698 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGID 171 (736)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~ 171 (736)
..+.-++...=.-++|+.....+.
T Consensus 79 -----~~~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 79 -----AEVERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred -----HHHHHHHHHhCeEEEEEeCCCCCC
Confidence 123334445445567887765554
No 332
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.06 E-value=0.062 Score=63.50 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=56.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccc---cCCCCC-----ccceEEeecccccc--ccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTHRP-----CTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~---~~~~~~-----~T~Giw~w~~p~~~--~~~~g~~~~v~llDteG~~~ 140 (736)
|-=|+|+|....|||+|+++|+.....+.- +.+... .+.||=+...++.. ...+|..+.+.|+||+|...
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 445899999999999999999875322211 111111 23466544433221 11256678899999999753
Q ss_pred cCCCCccchHHHHHhhhccceEEEccCCCCchHHhhh
Q 004698 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDR 177 (736)
Q Consensus 141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~ 177 (736)
+. ..+.-++...=.-++||.....+..+.+..
T Consensus 83 F~-----~~v~~~l~~aD~aILVvDat~g~~~qt~~~ 114 (595)
T TIGR01393 83 FS-----YEVSRSLAACEGALLLVDAAQGIEAQTLAN 114 (595)
T ss_pred HH-----HHHHHHHHhCCEEEEEecCCCCCCHhHHHH
Confidence 21 122223333222345666655555444443
No 333
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=95.05 E-value=0.04 Score=53.78 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=36.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|+.++|||+|+|+|.+.. |. + . ..|.|+-.... +...+.+.++||+|..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~--~~--~-~-~~T~~~~~~~~-------~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDE--FM--Q-P-IPTIGFNVETV-------EYKNLKFTIWDVGGKH 54 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CC--C-c-CCcCceeEEEE-------EECCEEEEEEECCCCh
Confidence 5699999999999999999864 42 1 1 23556444321 1234789999999964
No 334
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.03 E-value=6.3 Score=48.18 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698 545 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584 (736)
Q Consensus 545 ~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~ 584 (736)
+++++...+.-...+..++.++..+++++....+|...+.
T Consensus 190 e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~ 229 (1072)
T KOG0979|consen 190 EKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKS 229 (1072)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666667777777777777777776655443
No 335
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.98 E-value=5.3 Score=41.40 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK-AMEDQVCSEIEVLKSRSTAAEARLAAAR 637 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~-~~~~~~~~~i~~L~~k~~~~E~~~~~~~ 637 (736)
+.+.+.....+..-+-.+-.+...++.+++.+......|..+.+..+...+ ..+.++-.++..|.+.+...+..+..++
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~ 112 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAE 112 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444555555555566666666666666544333322 1122333444444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 638 EQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 638 ~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
.+...++..+..+..||..+..+.
T Consensus 113 ~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 113 EQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444443
No 336
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=12 Score=46.31 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
|-|||||.|||||=||..+.
T Consensus 27 FTaIIGPNGSGKSNlMDAIS 46 (1141)
T KOG0018|consen 27 FTAIIGPNGSGKSNLMDAIS 46 (1141)
T ss_pred ceeeeCCCCCchHHHHHHHH
Confidence 77999999999999999863
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.97 E-value=0.049 Score=54.49 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=31.2
Q ss_pred eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 56 l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
++++..++|...-.+=.+|.|+|+.++|||+|++.|+|..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3477778887543334578999999999999999999764
No 338
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.93 E-value=0.042 Score=58.58 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=47.4
Q ss_pred EEEeeCCCCCChhHHHHHHhC----CCCcccccC--CCCCccce-EEeeccccccccCCCCceEEEEeecCCCcccCCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLG----RSSGFQVAS--THRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~----~~~gF~~~~--~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~ 145 (736)
-|=|+|-+..|||.|+|.+-. ....-.+|+ |+-..+.+ |-+... ..+.++||+|...++-..
T Consensus 145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-----------p~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-----------PPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-----------CceEEecCCCcCCCCCCC
Confidence 367899999999999999753 222233433 22233344 333322 348899999998776555
Q ss_pred ccchHHHHHhhhccce
Q 004698 146 TYSTQIFSLAVLLSSM 161 (736)
Q Consensus 146 ~~d~~IFaLa~LLSS~ 161 (736)
..+.-=.||+.++++.
T Consensus 214 ~e~~lKLAL~g~Vkd~ 229 (335)
T KOG2485|consen 214 VEDGLKLALCGLVKDH 229 (335)
T ss_pred HHHhhhhhhccccccc
Confidence 5554444565555543
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.93 E-value=0.028 Score=46.76 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=35.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccC-----CCCceEEEEeec
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTAL-----DGTEYNLLLLDS 135 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~-----~g~~~~v~llDt 135 (736)
+|.|+|+.++|||++++.|...-.|..+ ....++|++...+..... .......+++|+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~-----~~i~~~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSV-----VVLDEIVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCE-----EEEeEEEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 5889999999999999998865211111 123448888755543211 111234677776
No 340
>CHL00071 tufA elongation factor Tu
Probab=94.92 E-value=0.093 Score=59.24 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCCC------ccccc---CCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRSS------GFQVA---STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~------gF~~~---~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|..-|+|+|...+|||+|+|+|++... ++... ....-...|+=+-....... .+...+.|+||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE---TENRHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc---cCCeEEEEEECCCh
Confidence 34555699999999999999999997531 11110 00111124444433222221 12356889999994
Q ss_pred cccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhH
Q 004698 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (736)
Q Consensus 139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~ 179 (736)
.. -....+.+++..=.-++|......+..++.+++.
T Consensus 86 ~~-----~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~ 121 (409)
T CHL00071 86 AD-----YVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL 121 (409)
T ss_pred HH-----HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence 21 1133344544322334555555455555555443
No 341
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.033 Score=62.56 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.++. |+|+|++..|||.|||.|..... .+-+.+-.+|+..-= .+| .++| +.|.|.||-|+-
T Consensus 267 ~gl~-iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaie--a~v---~~~G--~~v~L~DTAGiR 327 (531)
T KOG1191|consen 267 SGLQ-IAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIE--AQV---TVNG--VPVRLSDTAGIR 327 (531)
T ss_pred cCCe-EEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhhe--eEe---ecCC--eEEEEEeccccc
Confidence 4555 88999999999999999998752 222222223432211 111 2456 678999999984
No 342
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.91 E-value=13 Score=45.55 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004698 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV------LTKQKAMEDQVCSEIEVLKSRSTAAEARLA 634 (736)
Q Consensus 561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~------~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~ 634 (736)
.++.+++++-+.+-.+++....|..+.+.+..+.....+.|.+. .++..-..+++..+.++|+.+...+-..+.
T Consensus 419 ~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~ 498 (1195)
T KOG4643|consen 419 ILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN 498 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444445555555555222 222333344555556666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 635 AAREQALSAQEEVEEWKRKYGVAVR 659 (736)
Q Consensus 635 ~~~~q~~~~~~E~~e~~~ky~~~~~ 659 (736)
.....+......++++++-|...-.
T Consensus 499 ~r~~elsrl~a~~~elkeQ~kt~~~ 523 (1195)
T KOG4643|consen 499 NRDLELSRLHALKNELKEQYKTCDI 523 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666665555443
No 343
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.91 E-value=0.036 Score=53.26 Aligned_cols=40 Identities=35% Similarity=0.643 Sum_probs=32.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCC-cccccCCCCCccceEEeecccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSS-GFQVASTHRPCTKGLWLWSAPL 118 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~-gF~~~~~~~~~T~Giw~w~~p~ 118 (736)
-||+++||.++|||+|+..+.|... -| +||--+|+-...+
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F-------~~~G~~~l~~~~l 69 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQF-------SCTGELWLNEQRL 69 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCc-------ceeeEEEECCeec
Confidence 3799999999999999999998753 25 5788899876544
No 344
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.91 E-value=0.049 Score=55.26 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=35.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|+.++|||+|+++|.+.. |.-..+......+.|.- +. .+....+.|+||+|..
T Consensus 3 vll~G~~~sGKTsL~~~l~~~~--~~~t~~s~~~~~~~~~~--~~-----~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTTGK--YRSTVTSIEPNVATFIL--NS-----EGKGKKFRLVDVPGHP 59 (203)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCCccCcEeecceEEEe--ec-----CCCCceEEEEECCCCH
Confidence 7799999999999999999764 32211111112223221 11 1234678899999964
No 345
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.91 E-value=7.1 Score=42.50 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 554 ~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
.+.+.++.+.++...|..+..-+..-+-.|.+.++.++.++..+++.-
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444444444444444444444444444444444333
No 346
>PTZ00369 Ras-like protein; Provisional
Probab=94.88 E-value=0.047 Score=54.42 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=35.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++.+.. |.- .. ..|.|--++ ..+. .++..+.+-++||+|..
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~~--~~~--~~-~~t~~~~~~-~~~~---~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQNH--FID--EY-DPTIEDSYR-KQCV---IDEETCLLDILDTAGQE 64 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCc--Cc-CCchhhEEE-EEEE---ECCEEEEEEEEeCCCCc
Confidence 6689999999999999999764 421 11 123332221 1111 23555677789999964
No 347
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.85 E-value=0.051 Score=53.92 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|..++|||.|++++.+.. |.- ...| |.|.-. ...+. .+|..+.+-+.||.|..
T Consensus 4 iv~vG~~~vGKTsli~~~~~~~--f~~--~~~~-t~~~~~-~~~~~---~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDC--YPE--TYVP-TVFENY-TASFE---IDEQRIELSLWDTSGSP 60 (178)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCC--CcCC-ceEEEE-EEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999765 642 2223 434321 12221 24667889999999953
No 348
>PRK10869 recombination and repair protein; Provisional
Probab=94.84 E-value=11 Score=44.40 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 645 EEVEEWKRKYGVAVREAKAALEKAAIVQE------RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH 710 (736)
Q Consensus 645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e------~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~ 710 (736)
..+..++|||-..+.+.-+-.++.....+ ..++.++.+++.++.++..+-.+.+..=+....+++.
T Consensus 306 ~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 306 SKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788998766666555555554443 3455555555555555555554444433333333333
No 349
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.83 E-value=0.061 Score=52.63 Aligned_cols=63 Identities=25% Similarity=0.257 Sum_probs=40.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.++.=|.|+|..++|||+|+|++++.. |.+.. . ..|.|.-.....+. .+|..+.+.+.||.|-
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~~-~-~~T~~~~~~~~~~~---~~~~~~~l~~~d~~g~ 64 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLNA-Y-SPTIKPRYAVNTVE---VYGQEKYLILREVGED 64 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCccc-C-CCccCcceEEEEEE---ECCeEEEEEEEecCCc
Confidence 356678999999999999999999876 75221 1 22333221111121 2466677888899874
No 350
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.83 E-value=0.062 Score=52.57 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+++|.+.. |. .. ..|.|+-++.. .+.++.+.+.||.|..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~--~~---~~-~~t~g~~~~~~-------~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQ--SV---TT-IPTVGFNVETV-------TYKNVKFNVWDVGGQD 64 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCC--Cc---cc-cCCcccceEEE-------EECCEEEEEEECCCCH
Confidence 36799999999999999998644 42 11 22455543311 1234789999999964
No 351
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.80 E-value=0.094 Score=61.88 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|...+|||+|+|.|.|..
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 69999999999999999998764
No 352
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=12 Score=44.30 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--
Q 004698 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS-- 624 (736)
Q Consensus 547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~-- 624 (736)
-.+..+.++..++..+.+.++.++.++.-..++...++..+..++++...-....+.......+..+.+....+..+.
T Consensus 148 e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a 227 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNA 227 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666677777777777777777777666666665555555544444443333333333332222
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698 625 ----RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA--IVQERTSKEMQQREDVLREEFSSTLAEKE 698 (736)
Q Consensus 625 ----k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~--~~~e~~~e~~~~~~~~l~~e~~~~~~e~~ 698 (736)
+++..++. .........-=+|.+++.++|.+..++.+.+-+.-. ....-.++..+.++.+++ .+.+.+...+
T Consensus 228 ~~~~ql~~~~el-e~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~-~l~~~~~~LE 305 (716)
T KOG4593|consen 228 ELEQQLSLSEEL-EAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE-KLQSTLLGLE 305 (716)
T ss_pred hHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhHH
Confidence 22222111 111111112224556666777777776654433222 222233333333333332 2333344444
Q ss_pred HHHHHHHHHHHHHH
Q 004698 699 EEMKEKATKIEHAE 712 (736)
Q Consensus 699 ~~~~~~~~k~~~~~ 712 (736)
.+..++.+|+..-|
T Consensus 306 LeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 306 LENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555554443
No 353
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.76 E-value=0.054 Score=53.91 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=41.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|..+.|||.|++++++.. |.- .-..|.|+-.....+. .+|..+.+-+.||.|..
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~--f~~---~~~~T~g~~~~~~~i~---~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGE--FDE---DYIQTLGVNFMEKTIS---IRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6789999999999999998765 632 1234667655433332 24667889999999853
No 354
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.74 E-value=8.1 Score=42.39 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye 602 (736)
..+.-.+++..+..+..+...|+.+..++...-..|..-+..+|.+..+++..-+
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~ 196 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA 196 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555555554443
No 355
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=94.74 E-value=0.05 Score=55.89 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=39.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|..++|||+|+++++... |.-. ...|.|+-.+...+. .++..+.+-++||.|..
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~--f~~~---~~~tig~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEKK---YEPTIGVEVHPLDFF---TNCGKIRFYCWDTAGQE 73 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC--CCCc---cCCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence 348899999999999999987654 4321 123555433322221 13445889999999964
No 356
>PRK10218 GTP-binding protein; Provisional
Probab=94.73 E-value=0.12 Score=61.00 Aligned_cols=69 Identities=14% Similarity=0.340 Sum_probs=47.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---------CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---------~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.|--|+|+|...+|||+|+++|++....|.-... ..-.+.||-+-...... +..++.+.++||+|...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~d 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHAD 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcch
Confidence 4566999999999999999999986655643211 12346788776543322 23357889999999654
Q ss_pred c
Q 004698 141 Y 141 (736)
Q Consensus 141 ~ 141 (736)
+
T Consensus 81 f 81 (607)
T PRK10218 81 F 81 (607)
T ss_pred h
Confidence 3
No 357
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.71 E-value=0.059 Score=58.99 Aligned_cols=51 Identities=24% Similarity=0.152 Sum_probs=32.2
Q ss_pred CCCeeEEEeCCCCceeeCHHHHHHhhc---cCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 40 ARPIRLVYCDEKGKFRMDPEAVAALQL---VKEPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 40 ~~pi~Lv~~d~~~~l~l~~eAl~~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
++.|-+|+.+.. .-++.+-.++.. ..++-.||+|+|++++|||||++.|..
T Consensus 25 a~~it~~e~~~~---~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 25 ARAITLVESTRP---DHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhCCCc---hhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344566654321 111333344433 345667899999999999999999763
No 358
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.71 E-value=11 Score=43.96 Aligned_cols=25 Identities=36% Similarity=0.334 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 628 AAEARLAAAREQALSAQEEVEEWKR 652 (736)
Q Consensus 628 ~~E~~~~~~~~q~~~~~~E~~e~~~ 652 (736)
.+|..+..+...+..++.|+..|+.
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 359
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.71 E-value=3.9 Score=44.34 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 552 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 552 In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
+.=+.+.++....+...+....+.+.+|++.|++....+.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555555555555555555555555555555544
No 360
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.71 E-value=0.053 Score=54.10 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=37.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++++++.. |.-. . ..|.|.-.... + ..+|..+.+.++||.|..
T Consensus 3 ivivG~~~vGKTsli~~~~~~~--~~~~--~-~~t~~~~~~~~-i---~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGY--FPQV--Y-EPTVFENYVHD-I---FVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCc--c-CCcceeeeEEE-E---EECCEEEEEEEEECCCCh
Confidence 6799999999999999999765 5321 1 12333221111 1 124566889999999964
No 361
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.69 E-value=0.093 Score=61.83 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|....|||+|+|+|.+..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~ 28 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSA 28 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 69999999999999999999874
No 362
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.67 E-value=0.053 Score=52.90 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=35.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.++|+.++|||+|+|+|.+. |... ...|.|+-... +. ...+.+.++||+|.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~---~~~~---~~~t~g~~~~~--~~-----~~~~~~~i~D~~G~ 53 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE---IPKK---VAPTVGFTPTK--LR-----LDKYEVCIFDLGGG 53 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC---CCcc---ccCcccceEEE--EE-----ECCEEEEEEECCCc
Confidence 689999999999999999875 3211 12345543221 21 12477899999994
No 363
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=94.67 E-value=0.056 Score=54.92 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|++++.... |.- ..+.|.|+-.....+. .+|..+.+-+.||.|..
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--f~~---~~~~Ti~~~~~~~~i~---~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--FCE---ACKSGVGVDFKIKTVE---LRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CCC---cCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6799999999999999998765 632 1234555544333332 24667889999999953
No 364
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.66 E-value=0.076 Score=50.93 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=34.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|.... |. . + ..|.|.-+.. + ++.++.+.++||+|..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~--~~-~-~--~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGE--VV-T-T--IPTIGFNVET--V-----TYKNLKFQVWDLGGQT 54 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCC--Cc-C-c--CCccCcCeEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999997543 32 1 1 1233432211 1 1234678999999964
No 365
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.65 E-value=2.6 Score=45.17 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 645 EEVEEWKRKYGVAVREAKAALEKAA 669 (736)
Q Consensus 645 ~E~~e~~~ky~~~~~e~kalle~~~ 669 (736)
--+..+++|.+-+--|.+++|+=+.
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555555555555555444
No 366
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=94.63 E-value=0.058 Score=52.73 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=37.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++.+++.. |.. ...|.+..++-+ .+. .+|..+.+-++||+|..
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNG--YPT--EYVPTAFDNFSV--VVL---VDGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CCCCceeeeeeE--EEE---ECCEEEEEEEEECCCCh
Confidence 6799999999999999998754 532 122222223322 222 23556788999999964
No 367
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.63 E-value=0.053 Score=65.59 Aligned_cols=27 Identities=44% Similarity=0.866 Sum_probs=23.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..+..|+|+|.+.+|||+|+|+|+|..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~ 299 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR 299 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345679999999999999999999875
No 368
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.61 E-value=3.4 Score=49.99 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=21.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698 686 LREEFSSTLAEKEEEMKEKATKIEHAEQCL 715 (736)
Q Consensus 686 l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~ 715 (736)
-+..++++|.+-..+|+++..++.+..+++
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777888888877766654
No 369
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=13 Score=43.99 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004698 703 EKATKIEH 710 (736)
Q Consensus 703 ~~~~k~~~ 710 (736)
.+++|+.+
T Consensus 286 ~Lqskl~~ 293 (716)
T KOG4593|consen 286 GLQSKLGR 293 (716)
T ss_pred HHHHHHHH
Confidence 33333333
No 370
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.59 E-value=0.13 Score=50.70 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=40.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
+=.=|.|+|+.++|||+|+++|.+.. +.. . ..|.|.-+...++ .++.+.+.|..|-
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~--~~~---~-~pT~g~~~~~i~~-------~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGE--ISE---T-IPTIGFNIEEIKY-------KGYSLTIWDLGGQ 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSS--EEE---E-EEESSEEEEEEEE-------TTEEEEEEEESSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhcc--ccc---c-Ccccccccceeee-------CcEEEEEEecccc
Confidence 33347899999999999999998653 221 2 2377887776554 2377899999984
No 371
>PRK09866 hypothetical protein; Provisional
Probab=94.59 E-value=0.065 Score=62.64 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=36.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc--eEEeeccccccccCCCCceEEEEeecCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~--Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
-.+|+|+|+.++|||+|+|.|+|.. -++.+ ..++|. ++-.|. | |....+++.||-|+
T Consensus 69 ~~~valvG~sgaGKSTLiNaL~G~~-Vlpt~--~~~~t~lpT~i~~~-p-------g~re~~L~~dtvgf 127 (741)
T PRK09866 69 EMVLAIVGTMKAGKSTTINAIVGTE-VLPNR--NRPMTALPTLIRHT-P-------GQKEPVLHFSHVAP 127 (741)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCc-cccCC--CcccccccEEEEec-C-------CcCceeeecCCccc
Confidence 3689999999999999999999864 22222 223321 222332 2 22345677888776
No 372
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=94.59 E-value=0.075 Score=52.86 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=36.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+|+|+.++|||+|+|+|.+.. |.- ...+ |.+..... ++. .+|..+.+.++||.|...
T Consensus 4 i~ivG~~g~GKStLl~~l~~~~--~~~--~~~~-t~~~~~~~-~~~---~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFTLGE--FPE--EYHP-TVFENYVT-DCR---VDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--ccCC-cccceEEE-EEE---ECCEEEEEEEEECCCChh
Confidence 7899999999999999998543 421 1112 32322221 221 134557788999999643
No 373
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.58 E-value=7.6 Score=41.38 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 524 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 524 e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
.+++++++..++.....-.+-+++|-++|.-++...+++.. .+...-..++..+.....+|..|+.|.+-+..+.
T Consensus 5 q~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk---~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQK---SLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence 34444444444444444444445555555554444444432 2222333444444445555555555544444444
No 374
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=94.52 E-value=0.069 Score=52.61 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=37.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+.++++.. |.- ...|.....+.+ .+ ..+|..+.+.++||.|..
T Consensus 4 i~iiG~~~vGKSsli~~~~~~~--f~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNA--FPG--EYIPTVFDNYSA--NV---MVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC--cCCCcceeeeEE--EE---EECCEEEEEEEEECCCch
Confidence 6899999999999999998754 531 112222222222 11 135666889999999964
No 375
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.51 E-value=0.16 Score=57.03 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=55.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCc--ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC---C-
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSG--FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ---T- 144 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~g--F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~---~- 144 (736)
..=|+|+|.+..|||+|+|.|+|.... ..+.+|+.-.-..-|-| +|+ .+.|+||-|+---.+ +
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~---------~~~--~~~liDTAGiRrk~ki~e~~ 246 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER---------DGR--KYVLIDTAGIRRKGKITESV 246 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE---------CCe--EEEEEECCCCCcccccccce
Confidence 345999999999999999999997521 12222222112233444 243 478899999842111 1
Q ss_pred Cccc--hHHHHHhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698 145 GTYS--TQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT 182 (736)
Q Consensus 145 ~~~d--~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~ 182 (736)
..+. -.+=++.-.=.-++|.+-...+.++++.-+.++.
T Consensus 247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~ 286 (444)
T COG1160 247 EKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE 286 (444)
T ss_pred EEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH
Confidence 1111 1122222211223556666677777776555554
No 376
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.45 E-value=9 Score=41.66 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=90.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHH
Q 004698 516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLRE-------KSSSLSKTVD 588 (736)
Q Consensus 516 L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~-------r~~~L~~~le 588 (736)
+......+.+++..+..+++.-+.+....-+.-+-.+.-....++........-..+.....+ ++..+...--
T Consensus 133 ~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~ 212 (309)
T PF09728_consen 133 LREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEK 212 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444444443333333333333344444444344444444444 6666666667
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 589 SLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 665 (736)
Q Consensus 589 ~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kall 665 (736)
.++.+++-|.-+| ++++++.+..-..|+.+|+.+..++..+ .+|...|++||+..-. +++
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kkl--------------EKE~~~~k~k~e~~n~---~l~ 275 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKL--------------EKENQTWKSKWEKSNK---ALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhH---HHH
Confidence 7777788888777 6688888888889999998777755554 4567788888887654 333
Q ss_pred HHHH--HHHHHhhHHHHHHHHHHHHHHHhh
Q 004698 666 EKAA--IVQERTSKEMQQREDVLREEFSST 693 (736)
Q Consensus 666 e~~~--~~~e~~~e~~~~~~~~l~~e~~~~ 693 (736)
+-+. ......++....+.+.|+.=.+.+
T Consensus 276 ~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 276 EMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 223344444555555554444443
No 377
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=94.45 E-value=2.1 Score=41.78 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=49.6
Q ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004698 607 KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 675 (736)
Q Consensus 607 ~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~ 675 (736)
..+.+..++.++++.|+...+.++..+..+..+...+...-.+|+++|+.+..+.+.++-.-....++.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~ 154 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQ 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777777777777777777777777888999988888887777776666643
No 378
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.39 E-value=0.051 Score=53.18 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 004698 647 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 697 (736)
Q Consensus 647 ~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~ 697 (736)
++|+..||++++++. |+||..+. +.|.++.+.++|++|++++++|+
T Consensus 2 LeD~EsklN~AIERn-alLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-ALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999988 99999883 35678889999999999999877
No 379
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.38 E-value=8.6 Score=41.12 Aligned_cols=171 Identities=16% Similarity=0.257 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH------HHHHhhH
Q 004698 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW----------KRKYDQ------VLTKQKA 610 (736)
Q Consensus 547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~----------~~~yee------~~~~~~~ 610 (736)
.+-+.++.++...+.+-.++..|..+.+.+..+++.|-+.++.++...... ++.+++ +..-.-.
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e 131 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPE 131 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChH
Confidence 345555556666666666667777777777777777777766666555433 222211 1111111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698 611 MEDQVCSEIEVLKSRSTAAEAR------LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED 684 (736)
Q Consensus 611 ~~~~~~~~i~~L~~k~~~~E~~------~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~ 684 (736)
....+-+.|..|+..+...+.. +.....+++..+.++.+..-+.+.+..++..-=++-+... +...+...+-+
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~-~~~De~Rkead 210 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLF-EEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 2225555566666555555433 2333344444444444444444444444422222221111 33444445555
Q ss_pred HHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhhH
Q 004698 685 VLREEFSSTLAEKEE---EMKEKATKIEHAEQCLTTL 718 (736)
Q Consensus 685 ~l~~e~~~~~~e~~~---~~~~~~~k~~~~~~~~~~~ 718 (736)
.+++++=.....++. ++..++.+|+..++.+..|
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544433333322 2444455555544444433
No 380
>PRK05433 GTP-binding protein LepA; Provisional
Probab=94.37 E-value=0.11 Score=61.51 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccc---cCCC-----CCccceEEeeccccc--cccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTH-----RPCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~---~~~~-----~~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~~ 140 (736)
+-=|+|+|....|||+|+++|+.....+.- +.+. .-.+.||=+....+. ...++|+.+.+-|+||+|..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 445789999999999999999865322211 1111 011345544332221 112357778899999999754
Q ss_pred cCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
+. ..+.-++...=.-++|+.....+..+.+..+
T Consensus 87 F~-----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~ 119 (600)
T PRK05433 87 FS-----YEVSRSLAACEGALLVVDASQGVEAQTLANV 119 (600)
T ss_pred HH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 32 1122234433334667777666665555444
No 381
>COG0218 Predicted GTPase [General function prediction only]
Probab=94.35 E-value=0.25 Score=49.81 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=60.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCcc-c
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-S 148 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~-d 148 (736)
...=|+.+|....|||+|+|.|+|+..--.++.|.. .|.=|=.+. .++ .+.|+|.||.|-.....+. +
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG-rTq~iNff~-------~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG-RTQLINFFE-------VDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC-ccceeEEEE-------ecC---cEEEEeCCCcccccCCHHHHH
Confidence 344588999999999999999999753333443322 244443322 122 1778999999743332211 1
Q ss_pred hH---HHH----HhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698 149 TQ---IFS----LAVLLSSMFIYNQMGGIDESAIDRLSLVT 182 (736)
Q Consensus 149 ~~---IFa----La~LLSS~~IyN~~g~i~e~~l~~L~~v~ 182 (736)
.| |.- =+.|---+++.-....+.+.|.+.+.++.
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~ 132 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLL 132 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHH
Confidence 11 111 02234456777777888887876665544
No 382
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.34 E-value=0.14 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-|+|+|..++|||+|+..|.+.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999876
No 383
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.33 E-value=3.1 Score=46.14 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=22.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 517 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKR 547 (736)
Q Consensus 517 ~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~ 547 (736)
+....-++.++..++..+++++..+.+|+.+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777778888888888888888753
No 384
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.32 E-value=0.091 Score=53.46 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=39.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeec--cccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS--APLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~--~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|..++|||+|++++.+.. |.-. ...|.|.-+.. ..+....++|..+.+-+.||.|..
T Consensus 3 IvlvGd~gVGKTSLi~~~~~~~--f~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ--VLGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 7799999999999999999865 5321 12355532211 122111234667889999999953
No 385
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.26 E-value=9.9 Score=41.39 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 004698 645 EEVEEWKRKYGVA 657 (736)
Q Consensus 645 ~E~~e~~~ky~~~ 657 (736)
.|+..++++|+.+
T Consensus 271 ~Ei~~Lk~~~~~L 283 (312)
T smart00787 271 KEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 386
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.26 E-value=0.061 Score=53.41 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|+.++|||+|++++.... |. +..| |.|.-.. ++ ++.++.+.+.||+|..
T Consensus 20 v~lvG~~~vGKTsli~~~~~~~--~~---~~~~-T~~~~~~--~~-----~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLGE--VV---TTIP-TIGFNVE--TV-----EYKNLKFTMWDVGGQD 72 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--cc---ccCC-ccccceE--EE-----EECCEEEEEEECCCCH
Confidence 7788999999999999996443 42 1223 5564432 11 1234789999999953
No 387
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.24 E-value=0.75 Score=50.07 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
-+..+..+.+.++.+.+.+...++..+.. ......+.++.+.+..++.+...+..++..++.+...+.+++..++
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-----~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEE-----SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp -------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666554411 2223444444555555555555555555555555555555555555
Q ss_pred HHHHHHH
Q 004698 592 NEISDWK 598 (736)
Q Consensus 592 ~e~~e~~ 598 (736)
.+..++.
T Consensus 85 ~e~~~l~ 91 (314)
T PF04111_consen 85 EELEELD 91 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
No 388
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.24 E-value=0.051 Score=59.64 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=36.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEe
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLL 133 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~ll 133 (736)
-+++++||.++||||||..|.|-. +.|.| |++-+.++..-.|....+.+||=
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe----------~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE----------QPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----------CCCCceEEECCEECCCCChhhcccceeec
Confidence 479999999999999999998753 34555 77766655443444444555543
No 389
>PRK12736 elongation factor Tu; Reviewed
Probab=94.22 E-value=0.11 Score=58.26 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCC--------cccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~--------gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.|..-|+|+|...+|||+|+++|++... ++.+.. ...-...|+=+-....... .....+.|+||+|..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~---~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE---TEKRHYAHVDCPGHA 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec---CCCcEEEEEECCCHH
Confidence 4445599999999999999999997420 111000 0001122332222111111 123467899999953
Q ss_pred ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (736)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (736)
.+ ....+.+++..=.-++|+.....+..++.+++.+
T Consensus 87 ~f-----~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~ 122 (394)
T PRK12736 87 DY-----VKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred HH-----HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH
Confidence 11 1223444443334456666665566666655544
No 390
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.20 E-value=0.086 Score=52.95 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=40.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..+.|||+|+.++.+.. |.- ..+.|.|+-+....+. .+|..+.+-|+||.|..
T Consensus 9 ivviG~~~vGKTsll~~~~~~~--~~~---~~~~t~~~~~~~~~i~---~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDGS--TES---PYGYNMGIDYKTTTIL---LDGRRVKLQLWDTSGQG 66 (189)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 6699999999999999998754 531 1123555544333332 25667889999999964
No 391
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.20 E-value=0.052 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++|+|+.++|||+|++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 392
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.073 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 393
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.18 E-value=0.091 Score=51.79 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=38.2
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++.+.. |.- ...| |.|.-... .+ ..+|..+.+.++||.|..
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~~--f~~--~~~p-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNK--FPS--EYVP-TVFDNYAV-TV---MIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCC-ceeeeeEE-EE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 631 1222 44432221 11 124566889999999964
No 394
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.17 E-value=0.075 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 395
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.15 E-value=0.049 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|++|+||.|+||||||..|.|-.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999854
No 396
>PRK12735 elongation factor Tu; Reviewed
Probab=94.13 E-value=0.13 Score=57.72 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|..-|+|+|...+|||+|+|.|++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHh
Confidence 46667999999999999999999963
No 397
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=9.1 Score=40.42 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698 563 TSRINNLQGENISLREKSSSLSKTVDSL 590 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~le~l 590 (736)
.++...++.+++.....+..|.++++.+
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 398
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.09 E-value=0.088 Score=53.35 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
.=|.|+|+.++|||+|+|+|.+.. |.-+ .+.|.|.-....-. .+++..+.+.++||.|...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~--~~~~---~~~t~~~~~~~~~~---~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE--FPEG---YPPTIGNLDPAKTI---EPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc--Cccc---CCCceeeeeEEEEE---EeCCCEEEEEeecCCCHHHH
Confidence 348899999999999999999876 4321 12343433332211 11223577889999997543
No 399
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.07 E-value=8.2 Score=39.75 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-KKLADDYTSRINNLQGENISLREKSSSL 583 (736)
Q Consensus 505 l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l-kk~~e~~e~~~~~Le~k~~sl~~r~~~L 583 (736)
.+..++..+...+..+..+......++.+++..+....+|+.+....+..= ..+-..+-.+...++.....+...+..+
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~ 111 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666666666777777777777777776555444422 2222223334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004698 584 SKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 584 ~~~le~lk~e~~e~~~~ye 602 (736)
...++.++..+.+++++++
T Consensus 112 ~~~v~~l~~~l~~L~~ki~ 130 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLA 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 400
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.03 E-value=19 Score=43.83 Aligned_cols=15 Identities=0% Similarity=0.105 Sum_probs=6.2
Q ss_pred chhHHHHHHHHHHHH
Q 004698 458 SIDNVVKVLDGLISE 472 (736)
Q Consensus 458 ~~~~~~~~~~~ll~~ 472 (736)
++..|+..+.-.++.
T Consensus 534 dLE~fieE~s~tLdw 548 (769)
T PF05911_consen 534 DLERFIEEFSLTLDW 548 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 401
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.02 E-value=18 Score=43.48 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y 601 (736)
+.+..+.+.++.+..++..++.++..+..++..+.++++.++.++.......
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666777777777777777777777666666665544433
No 402
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.01 E-value=0.051 Score=58.67 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeecccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPL 118 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~ 118 (736)
+++++|+.|+||||||+.|.|.. +.+.| ||+++.++
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~----------~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYL----------PPDSGSVQVCGEDV 66 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------CCCceEEEECCEEc
Confidence 79999999999999999999874 12344 77777654
No 403
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.00 E-value=0.038 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
||.|+|+++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.98 E-value=0.049 Score=61.45 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHHh
Q 004698 70 PIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+-.||.++|++|+||||++..|.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999987
No 405
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.97 E-value=18 Score=43.25 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 632 RLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
.+..+++.++..-.-..|+..|.+.+...+
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~al~dv 367 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDMALMDV 367 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhH
Confidence 444445555555555555555555554444
No 406
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.96 E-value=0.13 Score=49.69 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.++|..++|||+|++++.... |. . . ..|.|+-+.. + ....+.+.|.||+|.+
T Consensus 3 v~~~G~~~~GKTsli~~l~~~~--~~-~--~-~pt~g~~~~~--~-----~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGE--IV-T--T-IPTIGFNVET--V-----EYKNISFTVWDVGGQD 55 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Cc-c--c-CCCCCcceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999996543 43 1 1 2344542211 1 1234789999999964
No 407
>COG2262 HflX GTPases [General function prediction only]
Probab=93.92 E-value=0.08 Score=58.51 Aligned_cols=56 Identities=34% Similarity=0.492 Sum_probs=45.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC-----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~-----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.++-.||++|-+.+|||+|+|.|.|.. .-| .|-.|.|+-|-+++ | ..++|-||=||
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF---ATLdpttR~~~l~~---------g--~~vlLtDTVGF 250 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF---ATLDPTTRRIELGD---------G--RKVLLTDTVGF 250 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccc---ccccCceeEEEeCC---------C--ceEEEecCccC
Confidence 578899999999999999999999753 235 35678888888864 2 35899999998
No 408
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.89 E-value=0.016 Score=70.06 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~ 592 (736)
...++.++..++.++..++...+. .+-.++..++.++..++.-..+...|+.+...+..+...+.+.++..+.
T Consensus 63 ~~~~k~~l~~Le~e~~~~~~e~~~-------~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e 135 (722)
T PF05557_consen 63 LIELKAQLNQLEYELEQLKQEHER-------AQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEE 135 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444444433 2223444444444444444444445555555555555555555555554
Q ss_pred HHHHHHHHH
Q 004698 593 EISDWKRKY 601 (736)
Q Consensus 593 e~~e~~~~y 601 (736)
+....+...
T Consensus 136 ~~~~~k~~l 144 (722)
T PF05557_consen 136 ELEQLKRKL 144 (722)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444444
No 409
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.88 E-value=0.046 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+||.++|||+|++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999976
No 410
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.88 E-value=8.8 Score=39.39 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=7.0
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 004698 565 RINNLQGENISLREKSSSL 583 (736)
Q Consensus 565 ~~~~Le~k~~sl~~r~~~L 583 (736)
....++.+++.+......+
T Consensus 52 ~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 411
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.057 Score=56.24 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.81 E-value=0.044 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+|++.|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999875
No 413
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=93.77 E-value=0.099 Score=51.44 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=36.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.++|+.++|||+|+++|.... |. + . ..|.|+-+.... ...+.+.+.||+|..
T Consensus 15 ki~l~G~~~~GKTsL~~~~~~~~--~~--~-~-~~t~~~~~~~~~-------~~~~~l~l~D~~G~~ 68 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGE--SV--T-T-IPTIGFNVETVT-------YKNISFTVWDVGGQD 68 (175)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CC--C-c-CCccccceEEEE-------ECCEEEEEEECCCCh
Confidence 48899999999999999996433 41 1 1 235565443211 124789999999953
No 414
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.70 E-value=11 Score=39.80 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=22.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698 669 AIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFF 727 (736)
Q Consensus 669 ~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~ 727 (736)
....+..+-........+..++-...+++ .++++...+|+...+.|..-.-+-++-.|
T Consensus 174 ~~~~~~~l~~~~~~N~~m~kei~~~re~i-~el~e~I~~L~~eV~~L~~~~~~~Re~iF 231 (258)
T PF15397_consen 174 QSPMQPALLQRTLENQVMQKEIVQFREEI-DELEEEIPQLRAEVEQLQAQAQDPREVIF 231 (258)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence 33333333333334444444444443333 22333333333333334433334444444
No 415
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.68 E-value=10 Score=40.45 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 579 KSSSLSKTVDSLKNEISDWKRKYDQVLTK----QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 654 (736)
Q Consensus 579 r~~~L~~~le~lk~e~~e~~~~yee~~~~----~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky 654 (736)
++..+...+..++.+...++.+.++.+.. ........+.++..++.++..+..++...+++.+..+.++.+.+...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777777777777666652 33334566666667777666666666666666666666654444433
Q ss_pred H
Q 004698 655 G 655 (736)
Q Consensus 655 ~ 655 (736)
+
T Consensus 101 ~ 101 (302)
T PF10186_consen 101 E 101 (302)
T ss_pred H
Confidence 3
No 416
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=93.68 E-value=0.18 Score=59.45 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+++|....|||+|+|.|.|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~ 24 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA 24 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999999753
No 417
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.66 E-value=13 Score=44.47 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 629 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 708 (736)
Q Consensus 629 ~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~ 708 (736)
+|.......+.++.+=+ .+++|.||+.+..|. .++. ...=-+...+..+|+.|.+..+.++ --.-.+..|+
T Consensus 651 Ie~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Ev----aka~---~~pd~~~k~kieal~~qik~~~~~a-~~~~~lkek~ 721 (762)
T PLN03229 651 IESLNEEINKKIERVIR-SSDLKSKIELLKLEV----AKAS---KTPDVTEKEKIEALEQQIKQKIAEA-LNSSELKEKF 721 (762)
T ss_pred HHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH----HhcC---CCCCcchHHHHHHHHHHHHHHHHHH-hccHhHHHHH
Confidence 33344444555555555 467777777776655 1111 1111111245566666666666555 2234556666
Q ss_pred HHHHHHHhh
Q 004698 709 EHAEQCLTT 717 (736)
Q Consensus 709 ~~~~~~~~~ 717 (736)
|.++.++..
T Consensus 722 e~l~~e~~~ 730 (762)
T PLN03229 722 EELEAELAA 730 (762)
T ss_pred HHHHHHHHH
Confidence 666655543
No 418
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.64 E-value=12 Score=40.28 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
+.+|+-+..+++.-..++.+...+..++...+++-+.|..++.....-.+.+...|+.+....+...+.=+..|..|++|
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsK 209 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESK 209 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 35566666666666666666666666676777777778777777777778888888888888877777777777788887
Q ss_pred hHHH
Q 004698 626 STAA 629 (736)
Q Consensus 626 ~~~~ 629 (736)
++++
T Consensus 210 VqDL 213 (401)
T PF06785_consen 210 VQDL 213 (401)
T ss_pred HHHH
Confidence 7773
No 419
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.63 E-value=0.11 Score=55.77 Aligned_cols=57 Identities=30% Similarity=0.351 Sum_probs=37.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
.+=|+.+|++..|||+|||.|.|..+-+.--+ |+--+--|+.-+ +| ..+=+||+||+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y---------~g--a~IQild~Pgi 120 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY---------KG--AQIQLLDLPGI 120 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee---------cC--ceEEEEcCccc
Confidence 44688999999999999999999763221111 222223355443 23 56778999998
No 420
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.62 E-value=0.074 Score=61.83 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=36.7
Q ss_pred CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 52 ~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..|-+--.|++.|...+.++.||+|+|+.++|||||++.|.+.
T Consensus 46 ~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 46 KGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred cchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4566777788888876677889999999999999999999865
No 421
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.60 E-value=0.057 Score=57.77 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=42.3
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC-----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~-----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..++.||||+|-+.+|||+|+|.|.+.. .-|. |..|+++-.-| |.| ..++|-||=||-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA---TLDpT~h~a~L---------psg--~~vlltDTvGFi 237 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA---TLDPTLHSAHL---------PSG--NFVLLTDTVGFI 237 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhe---eccchhhhccC---------CCC--cEEEEeechhhh
Confidence 3588899999999999999999998542 2353 34455554443 455 368999999973
No 422
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=93.57 E-value=0.29 Score=59.05 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..|--|+|+|...+|||+|+|+|++.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 35667999999999999999999854
No 423
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.47 E-value=0.12 Score=53.35 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=38.7
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|++++.+.. |.- ...| |.| .|. .++. .+|..+.+-|.||.|..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~~--f~~--~y~p-Ti~~~~~--~~~~---~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDA--YPG--SYVP-TVFENYT--ASFE---IDKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--ccCC-ccccceE--EEEE---ECCEEEEEEEEeCCCcH
Confidence 6799999999999999999765 642 1223 333 232 2232 35777889999999954
No 424
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.43 E-value=0.061 Score=54.67 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=24.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+.+-.||+|+|+.++|||||++.|.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455789999999999999999998763
No 425
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.41 E-value=14 Score=40.20 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL-K-R-YDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 583 (736)
Q Consensus 507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~-k-~-~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L 583 (736)
+.-++++...+..++.+......+++...+.......+. . . ....-..+-..+.+...+...|..++.++..++..+
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665554332111110 0 0 001222334445666666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 584 SKTVDSLKNEISDWKRKYDQVLTKQ-KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 662 (736)
Q Consensus 584 ~~~le~lk~e~~e~~~~yee~~~~~-~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k 662 (736)
..+...++..++..+..-+..-... --+.+.+-.+++.++.++..+|--+.+.-+..+-+..|-.-.+.|.+++..|.-
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776665553322111 033446777777777777777777777777777777777777777777766653
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=93.36 E-value=0.047 Score=60.48 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++++|..++|||+|+|.|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999999853
No 427
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.078 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
No 428
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.31 E-value=0.11 Score=61.90 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.++. |+|+|...+|||+|+|+|+...
T Consensus 23 ~~~~-i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 23 SLLR-FITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred CeeE-EEEECCCCCChHHHHHHHHHHh
Confidence 4566 6699999999999999999654
No 429
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=0.11 Score=49.54 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=45.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+-|+|+.+||||-||-++.... |.- ..++|-||-.-+.-+ ...|+.+.+-+.||-|..
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~k--fkD---dssHTiGveFgSrIi---nVGgK~vKLQIWDTAGQE 69 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENK--FKD---DSSHTIGVEFGSRIV---NVGGKTVKLQIWDTAGQE 69 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhh--hcc---cccceeeeeecceee---eecCcEEEEEEeecccHH
Confidence 5689999999999999998765 543 236799998887655 346777889999999953
No 430
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.27 E-value=0.33 Score=55.09 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.|..-|+|+|...+|||+|+|+|++..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence 455569999999999999999999543
No 431
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.26 E-value=0.083 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++++|+.|+||||||+.|.|..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 432
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=93.24 E-value=0.17 Score=49.00 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=36.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|++++++.. |.-. .+.|.|-.. ..+ ..+|..+.+.+.||.|..
T Consensus 3 i~vvG~~gvGKTsli~~~~~~~--f~~~---~~~~~~~~~--~~i---~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGS--YVQL---ESPEGGRFK--KEV---LVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCCC---CCCCccceE--EEE---EECCEEEEEEEEECCCCC
Confidence 6899999999999999987654 5321 122334331 112 124666788999999863
No 433
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.21 E-value=0.15 Score=52.64 Aligned_cols=53 Identities=25% Similarity=0.420 Sum_probs=37.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|++++++.. |. . . ..|.|.-+....+ ..+.+.++||.|..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~--f~--~-~-~~Tig~~~~~~~~-------~~~~l~iwDt~G~e 55 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERR--FK--D-T-VSTVGGAFYLKQW-------GPYNISIWDTAGRE 55 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CC--C-C-CCccceEEEEEEe-------eEEEEEEEeCCCcc
Confidence 6789999999999999999876 63 1 2 2355544332221 23678999999964
No 434
>PLN03126 Elongation factor Tu; Provisional
Probab=93.21 E-value=0.27 Score=56.57 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=55.2
Q ss_pred cCCCEEEEEeeCCCCCChhHHHHHHhCCCC--------cccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCC
Q 004698 67 VKEPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (736)
Q Consensus 67 i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~--------gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG 137 (736)
...|..-|+|+|...+|||+|+|+|++... ++.... +.+-..+||=+-....... ..+..+.|+||+|
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPG 153 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPG 153 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCC
Confidence 456777799999999999999999996421 111110 1112235664332211111 1234678999999
Q ss_pred CcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 138 ~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
...+- ...+.+++..=.-++|+.....+..+..+++
T Consensus 154 h~~f~-----~~~~~g~~~aD~ailVVda~~G~~~qt~e~~ 189 (478)
T PLN03126 154 HADYV-----KNMITGAAQMDGAILVVSGADGPMPQTKEHI 189 (478)
T ss_pred HHHHH-----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 53211 2234444432233455655544544444444
No 435
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.15 E-value=0.076 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSS 96 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~ 96 (736)
|=.+|+|+|+.++|||+|++.|.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 334799999999999999999998753
No 436
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.15 E-value=0.068 Score=54.44 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=24.8
Q ss_pred HhhccCCCEE---EEEeeCCCCCChhHHHHHHhCC
Q 004698 63 ALQLVKEPIG---VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 63 ~L~~i~~~v~---vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|..++-.|. ||+|+||.+|||||||..|-+-
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4555554333 8999999999999999988764
No 437
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.13 E-value=0.092 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++|+|+.|+|||+|++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 438
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.08 E-value=0.16 Score=52.78 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=39.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|..++|||.|++++.+.. |.- ...| |.|.-. ...+ ..+|..+.+-|.||.|..
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~--F~~--~y~p-Ti~~~~-~~~i---~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC--YPE--TYVP-TVFENY-TAGL---ETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC--CcCC-ceeeee-EEEE---EECCEEEEEEEEeCCCch
Confidence 36799999999999999998765 642 2223 334322 1222 235677999999999953
No 439
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.08 E-value=0.14 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+|++.|+|-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 440
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.07 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 441
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.01 E-value=13 Score=38.62 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698 632 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 711 (736)
Q Consensus 632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~ 711 (736)
+...+.+++...+....+|.++=..++......|-+.+-.-...+++....+++.-.++..........+..+..||...
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666655544444444333333333334444444444444444444455555555555
Q ss_pred HHHHhhHHH
Q 004698 712 EQCLTTLRL 720 (736)
Q Consensus 712 ~~~~~~~~~ 720 (736)
+.....+.-
T Consensus 133 ~~~~~~l~a 141 (225)
T COG1842 133 RAKKEALKA 141 (225)
T ss_pred HHHHHHHHH
Confidence 544444433
No 442
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.093 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.99 E-value=4.7 Score=48.77 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.0
Q ss_pred CEEEEEe
Q 004698 70 PIGVVSV 76 (736)
Q Consensus 70 ~v~vVsv 76 (736)
-|+||-+
T Consensus 106 ~v~V~~L 112 (717)
T PF10168_consen 106 GVVVLEL 112 (717)
T ss_pred cEEEEEe
Confidence 3444444
No 444
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.99 E-value=19 Score=40.59 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHH
Q 004698 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-------IVQERTSKEMQQREDV 685 (736)
Q Consensus 613 ~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-------~~~e~~~e~~~~~~~~ 685 (736)
..++.-|++|++.+.-+|-++..+...-...+++.++-.++...-.++..-.|.+.+ -..|+.+...+.++++
T Consensus 490 ~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~ 569 (622)
T COG5185 490 KNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDE 569 (622)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHH
Confidence 356666778888888888888888888888888887777777666655544444443 3445666667777777
Q ss_pred HHHHHHhhHHHHHHH--------HH---HHHHHHHHHHHHHhhHHHHhhhh
Q 004698 686 LREEFSSTLAEKEEE--------MK---EKATKIEHAEQCLTTLRLELKVS 725 (736)
Q Consensus 686 l~~e~~~~~~e~~~~--------~~---~~~~k~~~~~~~~~~~~~~l~~~ 725 (736)
+-..+-.-..++.++ |+ -+|..++..+-.+...+.+|...
T Consensus 570 ~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k~~~~l~~~ 620 (622)
T COG5185 570 LKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRNL 620 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHhc
Confidence 666666655555544 11 24555666666666666665543
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.09 Score=54.00 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.2
Q ss_pred HHHhhccCCCEE---EEEeeCCCCCChhHHHHHHhCCC
Q 004698 61 VAALQLVKEPIG---VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 61 l~~L~~i~~~v~---vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.++|+.++-.|. |-+|+||.+||||||.+.|.|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367766653333 78999999999999999999985
No 446
>PRK00049 elongation factor Tu; Reviewed
Probab=92.96 E-value=0.25 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|..-|+|+|...+|||+|+++|++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHh
Confidence 45556999999999999999999973
No 447
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.90 E-value=0.15 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999874
No 448
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.90 E-value=0.086 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.|+|+|..++||||||+.|.|.-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCcc
Confidence 69999999999999999999864
No 449
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.89 E-value=0.35 Score=57.09 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=36.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.+|+|+|...+|||+|+|+|.+.. |..+.. ...|..+-.+..++ +++. .+.|+||+|...
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~-~GIT~~ig~~~v~~----~~~~--~i~~iDTPGhe~ 147 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTK--VAQGEA-GGITQHIGAYHVEN----EDGK--MITFLDTPGHEA 147 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cccccC-CceeecceEEEEEE----CCCc--EEEEEECCCCcc
Confidence 369999999999999999998764 432211 11232222222211 1222 578999999643
No 450
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=92.89 E-value=0.37 Score=58.54 Aligned_cols=90 Identities=16% Similarity=0.325 Sum_probs=48.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHH
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQI 151 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~I 151 (736)
.+|+|+|....|||+|+|+|.+.. |..+.. ...|..+-.+..++ +| ..+.|+||+|...+.. ++
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~-~GIT~~iga~~v~~-----~~--~~ItfiDTPGhe~F~~-----m~- 354 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTN--VAAGEA-GGITQHIGAYQVET-----NG--GKITFLDTPGHEAFTA-----MR- 354 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cccccc-CceeeeccEEEEEE-----CC--EEEEEEECCCCccchh-----HH-
Confidence 479999999999999999998654 322211 11122121111111 12 5688999999654311 11
Q ss_pred HHHhhhcc--ceEEEccCCCCchHHhhhh
Q 004698 152 FSLAVLLS--SMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 152 FaLa~LLS--S~~IyN~~g~i~e~~l~~L 178 (736)
.-++-.+ -++||.....+..+..+.+
T Consensus 355 -~rga~~aDiaILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 355 -ARGAQVTDIVVLVVAADDGVMPQTIEAI 382 (787)
T ss_pred -HhhhhhCCEEEEEEECCCCCCHhHHHHH
Confidence 1111112 2567776554545444443
No 451
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.84 E-value=16 Score=39.37 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=64.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHH
Q 004698 514 SSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS-SSLSKTVDSLKN 592 (736)
Q Consensus 514 ~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~-~~L~~~le~lk~ 592 (736)
..++..+.++..+...++..++..... -+.+++.+..++.. .+.+..+...=++-+ ..|-+.++.+++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~----~~~L~~e~~~lr~~-------sv~~~~~aEqEEE~isN~LlKkl~~l~k 91 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKAR----CKHLQEENRALREA-------SVRIQAKAEQEEEFISNTLLKKLQQLKK 91 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888777777766442111 13445555554443 344444444334333 357788899999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 004698 593 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL 633 (736)
Q Consensus 593 e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~ 633 (736)
++..+-..|++.=.-. .+.+++.+..|++--..+|..+
T Consensus 92 eKe~L~~~~e~EEE~l---tn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 92 EKETLALKYEQEEEFL---TNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885433322 4567777777777444555553
No 452
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.82 E-value=12 Score=37.87 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=27.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698 674 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVS 725 (736)
Q Consensus 674 ~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~ 725 (736)
+.+..++.++.-....++-.+.--..++.+.+.++..+...+..|..-|+++
T Consensus 139 ~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 139 KKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433344444444344446666666666666666666666654
No 453
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=92.78 E-value=0.2 Score=49.99 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=38.3
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|++++++.. |.- ...| |.|.-. ...+ ..++..+.+-+.||.|..
T Consensus 8 ivvvGd~~vGKTsli~~~~~~~--f~~--~~~p-T~~~~~-~~~~---~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDC--FPE--NYVP-TVFENY-TASF---EIDTQRIELSLWDTSGSP 64 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--ccCC-ceeeee-EEEE---EECCEEEEEEEEECCCch
Confidence 8899999999999999999765 532 1112 333221 1222 225667889999999953
No 454
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.74 E-value=0.083 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 455
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.71 E-value=0.082 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 456
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.69 E-value=32 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.9
Q ss_pred EeeCCCCCChhHHHHHHh
Q 004698 75 SVCGRARQGKSFILNQLL 92 (736)
Q Consensus 75 sv~G~~rtGKS~LlN~l~ 92 (736)
=|+||.|||||++.+.+.
T Consensus 46 mIiGpNGSGKSSiVcAIc 63 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAIC 63 (1072)
T ss_pred eEECCCCCCchHHHHHHH
Confidence 468999999999998864
No 457
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.68 E-value=0.084 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 458
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.64 E-value=0.1 Score=42.72 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.0
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+..|.|+.++|||+||+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999853
No 459
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.62 E-value=0.082 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 69999999999999999999864
No 460
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=92.61 E-value=11 Score=36.88 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
...|+...+.+......-+..-...+..+.+.+..++...+++...+++++++...|+.++.++.+....|...
T Consensus 52 ~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~ 125 (158)
T PF09744_consen 52 LELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEER 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh
Confidence 44444444444444444444444444444555556666666666667777777766666666655555444443
No 461
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=92.59 E-value=0.22 Score=58.81 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCC---------CCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|+|+|...+|||+|+++|+.....|.-...+ .-..+||=+-+..... +..++.+-|+||+|..+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHH
Confidence 38999999999999999999765445332111 1123566554432211 12347788999999754
No 462
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.57 E-value=27 Score=41.26 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.8
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
++..|+|+.|+|||.||..|.
T Consensus 23 g~~vitG~nGaGKS~ll~al~ 43 (563)
T TIGR00634 23 GLTVLTGETGAGKSMIIDALS 43 (563)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356789999999999998864
No 463
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=92.52 E-value=0.33 Score=56.65 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=50.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCC-----C----------ccceEEeeccccccccCCCCceEEEEee
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----P----------CTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~-----~----------~T~Giw~w~~p~~~~~~~g~~~~v~llD 134 (736)
.+--|+|+|...+|||+|+++|+-....-...+++. + .++||=+.+..... +..++.+.|+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inliD 86 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLLD 86 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEEE
Confidence 455699999999999999999874321111101110 1 12455444332221 22347788999
Q ss_pred cCCCcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698 135 SEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (736)
Q Consensus 135 teG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e 172 (736)
|+|..++. .+++ -+|...=+=++|+.....+..
T Consensus 87 TPG~~df~----~~~~-~~l~~aD~aIlVvDa~~gv~~ 119 (527)
T TIGR00503 87 TPGHEDFS----EDTY-RTLTAVDNCLMVIDAAKGVET 119 (527)
T ss_pred CCChhhHH----HHHH-HHHHhCCEEEEEEECCCCCCH
Confidence 99974221 1222 233332233556666554443
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.50 E-value=0.091 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 465
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.48 E-value=0.37 Score=53.40 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC--Cccccc-------C-CC-CCccceEEeeccccccccCCCCceEEEE-eec
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVA-------S-TH-RPCTKGLWLWSAPLKRTALDGTEYNLLL-LDS 135 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF~~~-------~-~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~l-lDt 135 (736)
..+.++|.|+|+..||||||.+.|+++. .||.++ . .. -|.|.+.-.-..|+.. ......++..| =++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~-L~~l~~~~~~FvG~i 148 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVIS-LSELEPFTLYFVGSI 148 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCC-HHHcCccceEEEecc
Confidence 3578899999999999999999998763 366443 1 11 1333333332222221 00112223333 222
Q ss_pred CCCcccCCCCccchHHHHHhhhccceEEEccCCCCch-HHhhhhH
Q 004698 136 EGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE-SAIDRLS 179 (736)
Q Consensus 136 eG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e-~~l~~L~ 179 (736)
...+...+--.-=++++.+|.=.+-+.|.|+.|-|.- ..++.+.
T Consensus 149 sP~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~ 193 (398)
T COG1341 149 SPQGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKR 193 (398)
T ss_pred CCCCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHH
Confidence 2211111111113678888887778889999999987 7887654
No 466
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.47 E-value=0.092 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 467
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.093 Score=53.70 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++|+|+.++|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999863
No 468
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.45 E-value=0.085 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+.+|+|+|+-+||||+|.|+|...
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~ 31 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANI 31 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHH
Confidence 568999999999999999999854
No 469
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.45 E-value=8.4 Score=38.49 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=2.8
Q ss_pred HHHHHHhh
Q 004698 567 NNLQGENI 574 (736)
Q Consensus 567 ~~Le~k~~ 574 (736)
..++..+.
T Consensus 105 ~~~~~~l~ 112 (191)
T PF04156_consen 105 QELESELE 112 (191)
T ss_pred HHHHHHHH
Confidence 33333333
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.45 E-value=0.068 Score=53.75 Aligned_cols=23 Identities=13% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
||+|+|+.++|||||++.|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998753
No 471
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.095 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 472
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.44 E-value=37 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.2
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|-.|+|+.|+|||+||+.+.
T Consensus 26 gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 356789999999999999965
No 473
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=92.43 E-value=0.38 Score=57.13 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
||+++|....|||+|+|.|.|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~ 23 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV 23 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999975
No 474
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=92.42 E-value=0.48 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+..=|+|+|...+|||+|+++|+...
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc
Confidence 444457899999999999999998654
No 475
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.42 E-value=0.094 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++|+|+.|+|||+||+.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998864
No 476
>PLN03127 Elongation factor Tu; Provisional
Probab=92.40 E-value=0.56 Score=53.63 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..|..-|+|+|-..+|||+|++.|.+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~ 84 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKV 84 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhH
Confidence 345555999999999999999999743
No 477
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.39 E-value=0.2 Score=49.68 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=36.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
|.++|+.++|||+|++++.... |. + . ..|.|+-+.. + ++..+.+.+.||+|.
T Consensus 20 i~ivG~~~~GKTsl~~~l~~~~--~~--~-~-~pt~g~~~~~--~-----~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 20 ILMVGLDAAGKTTILYKLKLGE--IV--T-T-IPTIGFNVET--V-----EYKNISFTVWDVGGQ 71 (181)
T ss_pred EEEECCCCCCHHHHHHHHccCC--Cc--c-c-cCCcceeEEE--E-----EECCEEEEEEECCCC
Confidence 7899999999999999997543 42 1 1 2355654332 1 233578999999994
No 478
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.33 E-value=0.19 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++++||.|+||||||+.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
No 479
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=92.33 E-value=0.25 Score=49.36 Aligned_cols=57 Identities=28% Similarity=0.232 Sum_probs=39.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|++++.... |.-. . ..|.|.-. ..++ ..+|..+.+-+.||.|..
T Consensus 6 i~~vG~~~vGKTsli~~~~~~~--f~~~--~-~~t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNA--FPKE--Y-IPTVFDNY-SAQT---AVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcC--C-CCceEeee-EEEE---EECCEEEEEEEEECCCch
Confidence 7899999999999999998754 6321 1 23445422 2222 125667899999999954
No 480
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.32 E-value=0.099 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.31 E-value=0.099 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999864
No 482
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.30 E-value=0.1 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999874
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.28 E-value=0.092 Score=53.32 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||+||+.|.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
No 484
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.28 E-value=0.092 Score=52.81 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
||+|+|+.+||||||.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 485
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.28 E-value=0.11 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+++|+|+.++|||+|++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999864
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.27 E-value=0.1 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 487
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=92.27 E-value=0.16 Score=56.60 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|-.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 488
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.25 E-value=0.098 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 79999999999999999999864
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.24 E-value=0.12 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|+|+|+.|+||||++..|.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 490
>PLN02939 transferase, transferring glycosyl groups
Probab=92.23 E-value=35 Score=42.51 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHhhHHHHHH
Q 004698 625 RSTAAEARLAAAREQALSA---QEEVEEWKRKYGVAVREAKAALEKAAIVQE--RTSKEMQQREDVLREEFSSTLAEKEE 699 (736)
Q Consensus 625 k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky~~~~~e~kalle~~~~~~e--~~~e~~~~~~~~l~~e~~~~~~e~~~ 699 (736)
|+..++..++.+..|++.+ -++--|+++|.+.+. +.|+.++..-- ...+-.+.+...+++.++..-+|+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLE----ASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHS 376 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333444444444444332 344456666666554 33444431111 12233444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Q 004698 700 EMKEKATKIEHAEQCLTTLRLELKVSFFD 728 (736)
Q Consensus 700 ~~~~~~~k~~~~~~~~~~~~~~l~~~~~~ 728 (736)
+++.-++.++.-...+..+..|-+.+..+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (977)
T PLN02939 377 YIQLYQESIKEFQDTLSKLKEESKKRSLE 405 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 44444444444333344444444444433
No 491
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.21 E-value=0.1 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++||||||+.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999864
No 492
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.21 E-value=6.5 Score=43.96 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698 514 SSLMLKYRSIEDNMKLLKK-QLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 589 (736)
Q Consensus 514 ~~L~~k~es~e~e~~~lk~-~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~ 589 (736)
+.|.-+..--+..+..+.+ ++++.....+... +..+....++......++.+...++.++...+.++..+++.=..
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 004698 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA 629 (736)
Q Consensus 590 lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~ 629 (736)
+.+...-|+.++++.....+........+|++|+.+++++
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 493
>PF13514 AAA_27: AAA domain
Probab=92.21 E-value=44 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.7
Q ss_pred eeCCCCCChhHHHHHHhCCCCcccc
Q 004698 76 VCGRARQGKSFILNQLLGRSSGFQV 100 (736)
Q Consensus 76 v~G~~rtGKS~LlN~l~~~~~gF~~ 100 (736)
|.||.=+||||+|.+|.+--=||+.
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~ 25 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPT 25 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 6899999999999997655445543
No 494
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.21 E-value=0.11 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++|||+||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 495
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.21 E-value=0.073 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
||+|+|+.++|||||++.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 496
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=92.20 E-value=0.15 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+++|+|+.++|||+|++.|.|..
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 497
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.20 E-value=0.1 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+++|+|+.|+||||||+.|.|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 498
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.20 E-value=0.1 Score=51.93 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|+|+||.++|||||||.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999875
No 499
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.19 E-value=0.36 Score=54.22 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc---------ceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT---------KGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T---------~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
..|...|+|+|...+|||+|++.|++....-.-+....... +|+=+-...+.. ......+.|+||+|.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~---~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY---ETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE---cCCCEEEEEEECCch
Q ss_pred cccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHH
Q 004698 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQM 184 (736)
Q Consensus 139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el 184 (736)
..+- ...+.+++..=.-++|+.....+..++.+++.++..+
T Consensus 86 ~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~ 126 (394)
T TIGR00485 86 ADYV-----KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV 126 (394)
T ss_pred HHHH-----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc
No 500
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.19 E-value=9.3 Score=35.62 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698 504 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 583 (736)
Q Consensus 504 ~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L 583 (736)
.+++++.+.+..+...+.+++.++..+...-+.+...+-......++. .........+..+...++.+++.+=+=++.=
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-RALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 584 SKTVDSLKNEISDWKRKYDQVLTK 607 (736)
Q Consensus 584 ~~~le~lk~e~~e~~~~yee~~~~ 607 (736)
...++.|+..+.+++..|...+..
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Done!