Query 004698
Match_columns 736
No_of_seqs 345 out of 1302
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 02:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5n_A Interferon-induced guan 100.0 1.5E-90 5E-95 796.2 58.6 515 38-561 6-537 (592)
2 4ido_A Atlastin-1; GTPase, GTP 100.0 4.2E-87 1.4E-91 739.9 37.1 382 37-431 29-438 (457)
3 3q5d_A Atlastin-1; G protein, 100.0 2.4E-78 8.2E-83 674.8 33.7 383 37-432 29-439 (447)
4 2v71_A Nuclear distribution pr 99.0 1.1E-07 3.7E-12 92.7 23.5 166 521-698 6-178 (189)
5 1c1g_A Tropomyosin; contractIl 98.6 0.0004 1.4E-08 70.5 35.4 42 617-658 146-187 (284)
6 2v66_B Nuclear distribution pr 98.5 4.1E-06 1.4E-10 74.5 16.4 96 577-673 2-104 (111)
7 1c1g_A Tropomyosin; contractIl 98.5 0.0012 4E-08 67.0 36.2 30 622-651 165-194 (284)
8 3ol1_A Vimentin; structural ge 98.4 6.5E-06 2.2E-10 75.1 15.5 98 508-609 17-114 (119)
9 3swk_A Vimentin; cytoskeleton, 98.2 4.6E-06 1.6E-10 71.5 9.7 86 512-601 1-86 (86)
10 1i84_S Smooth muscle myosin he 97.8 5.7E-05 2E-09 94.1 11.0 39 52-91 151-189 (1184)
11 3lxw_A GTPase IMAP family memb 97.8 6.5E-05 2.2E-09 77.0 9.4 58 73-142 23-84 (247)
12 3iev_A GTP-binding protein ERA 97.7 0.00011 3.7E-09 78.0 10.5 62 68-141 7-72 (308)
13 1i84_S Smooth muscle myosin he 97.7 8.7E-05 3E-09 92.5 10.7 17 127-143 457-473 (1184)
14 2xtp_A GTPase IMAP family memb 97.7 0.00016 5.4E-09 74.2 10.9 61 70-142 21-85 (260)
15 2v71_A Nuclear distribution pr 97.7 0.0088 3E-07 58.2 22.3 142 574-726 6-157 (189)
16 3lxx_A GTPase IMAP family memb 97.6 0.00019 6.5E-09 72.7 10.2 61 70-142 28-92 (239)
17 3na7_A HP0958; flagellar bioge 97.6 0.0072 2.5E-07 62.3 22.1 99 550-650 32-130 (256)
18 4dhe_A Probable GTP-binding pr 97.5 0.00029 9.9E-09 69.9 9.1 66 70-142 28-93 (223)
19 1wf3_A GTP-binding protein; GT 97.4 0.00021 7.2E-09 75.6 8.2 58 70-140 6-67 (301)
20 1ega_A Protein (GTP-binding pr 97.4 0.00017 5.7E-09 76.3 7.1 57 70-139 7-67 (301)
21 2qu8_A Putative nucleolar GTP- 97.4 0.0005 1.7E-08 68.9 10.1 60 71-140 29-88 (228)
22 3pqc_A Probable GTP-binding pr 97.4 0.00042 1.4E-08 66.7 9.1 58 72-141 24-81 (195)
23 2dyk_A GTP-binding protein; GT 97.4 0.00023 7.7E-09 66.3 6.5 59 73-140 3-61 (161)
24 1h65_A Chloroplast outer envel 97.3 0.00033 1.1E-08 72.5 7.7 64 69-141 37-100 (270)
25 3trt_A Vimentin; cytoskeleton, 97.3 0.0017 6E-08 54.2 10.6 66 591-663 8-74 (77)
26 3t5d_A Septin-7; GTP-binding p 97.3 0.00024 8.2E-09 73.8 6.5 64 73-140 10-77 (274)
27 3def_A T7I23.11 protein; chlor 97.2 0.0005 1.7E-08 70.8 7.9 65 69-142 34-98 (262)
28 2erx_A GTP-binding protein DI- 97.2 0.00059 2E-08 64.0 7.2 56 73-139 5-62 (172)
29 2j69_A Bacterial dynamin-like 97.2 0.62 2.1E-05 54.6 42.2 26 70-95 68-93 (695)
30 2efr_A General control protein 97.1 0.19 6.6E-06 47.3 24.6 104 529-647 4-107 (155)
31 1svi_A GTP-binding protein YSX 97.1 0.0012 4.3E-08 63.6 8.5 63 70-143 22-84 (195)
32 3tw8_B RAS-related protein RAB 97.1 0.00057 1.9E-08 64.8 5.7 64 69-140 7-70 (181)
33 3vkg_A Dynein heavy chain, cyt 97.0 0.28 9.6E-06 66.1 32.5 74 617-698 2014-2087(3245)
34 1ek0_A Protein (GTP-binding pr 97.0 0.00056 1.9E-08 64.0 5.5 59 73-139 5-63 (170)
35 3t34_A Dynamin-related protein 97.0 0.00034 1.2E-08 75.6 4.4 26 70-95 33-58 (360)
36 3o0z_A RHO-associated protein 97.0 0.21 7.2E-06 47.5 22.8 154 523-713 4-157 (168)
37 1z0j_A RAB-22, RAS-related pro 97.0 0.00059 2E-08 64.0 5.5 60 72-139 7-66 (170)
38 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00051 1.7E-08 65.1 4.9 61 71-139 7-67 (177)
39 2g6b_A RAS-related protein RAB 97.0 0.00074 2.5E-08 64.1 5.9 63 70-139 9-71 (180)
40 2nzj_A GTP-binding protein REM 97.0 0.00086 3E-08 63.2 6.2 61 71-140 4-64 (175)
41 3tnu_B Keratin, type II cytosk 97.0 0.0073 2.5E-07 55.6 12.1 53 605-664 2-55 (129)
42 1u8z_A RAS-related protein RAL 97.0 0.00089 3.1E-08 62.4 6.0 58 73-139 6-63 (168)
43 1z08_A RAS-related protein RAB 97.0 0.00072 2.5E-08 63.5 5.4 60 72-139 7-66 (170)
44 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00096 3.3E-08 63.8 6.3 58 73-139 6-63 (189)
45 3iby_A Ferrous iron transport 96.9 0.0008 2.7E-08 69.3 6.1 60 73-142 3-62 (256)
46 2y8e_A RAB-protein 6, GH09086P 96.9 0.00061 2.1E-08 64.5 4.8 60 72-139 15-74 (179)
47 1kao_A RAP2A; GTP-binding prot 96.9 0.001 3.5E-08 61.9 6.3 58 73-139 5-62 (167)
48 1z2a_A RAS-related protein RAB 96.9 0.0005 1.7E-08 64.3 4.1 59 73-139 7-65 (168)
49 1vg8_A RAS-related protein RAB 96.9 0.0012 4.1E-08 64.4 7.0 64 69-140 6-69 (207)
50 2fn4_A P23, RAS-related protei 96.9 0.001 3.6E-08 62.9 6.3 61 70-139 8-68 (181)
51 1r2q_A RAS-related protein RAB 96.9 0.00082 2.8E-08 62.9 5.5 60 72-139 7-66 (170)
52 2zej_A Dardarin, leucine-rich 96.9 0.0007 2.4E-08 65.3 5.1 63 74-139 5-67 (184)
53 3clv_A RAB5 protein, putative; 96.9 0.00075 2.6E-08 65.1 5.3 23 73-95 9-31 (208)
54 3a1s_A Iron(II) transport prot 96.9 0.00097 3.3E-08 68.8 6.5 61 72-142 6-66 (258)
55 3i8s_A Ferrous iron transport 96.9 0.0016 5.6E-08 67.6 8.0 60 73-142 5-64 (274)
56 3tnu_A Keratin, type I cytoske 96.9 0.0061 2.1E-07 56.3 11.0 54 604-664 3-57 (131)
57 2oil_A CATX-8, RAS-related pro 96.9 0.00097 3.3E-08 64.5 5.9 59 73-139 27-85 (193)
58 3k53_A Ferrous iron transport 96.9 0.0011 3.7E-08 68.7 6.4 61 71-141 3-63 (271)
59 2ce2_X GTPase HRAS; signaling 96.9 0.0012 4.2E-08 61.2 6.2 58 73-139 5-62 (166)
60 1z0f_A RAB14, member RAS oncog 96.9 0.00076 2.6E-08 63.8 4.7 61 71-139 15-75 (179)
61 1g16_A RAS-related protein SEC 96.8 0.00074 2.5E-08 63.3 4.5 59 73-139 5-63 (170)
62 1c1y_A RAS-related protein RAP 96.8 0.0013 4.6E-08 61.3 6.2 58 73-139 5-62 (167)
63 1zbd_A Rabphilin-3A; G protein 96.8 0.0013 4.4E-08 64.2 6.1 61 71-139 8-68 (203)
64 3q85_A GTP-binding protein REM 96.8 0.00085 2.9E-08 63.0 4.6 61 72-140 3-63 (169)
65 2bov_A RAla, RAS-related prote 96.8 0.0021 7.2E-08 62.5 7.5 62 69-139 12-73 (206)
66 1jwy_B Dynamin A GTPase domain 96.8 0.00062 2.1E-08 71.7 3.7 26 70-95 23-48 (315)
67 2gf0_A GTP-binding protein DI- 96.8 0.0014 4.6E-08 63.5 5.8 57 72-139 9-67 (199)
68 2gj8_A MNME, tRNA modification 96.8 0.0014 5E-08 62.5 5.8 58 73-139 6-63 (172)
69 3t5g_A GTP-binding protein RHE 96.8 0.0016 5.6E-08 61.9 6.2 62 71-141 6-67 (181)
70 3cph_A RAS-related protein SEC 96.7 0.001 3.4E-08 65.2 4.7 62 71-140 20-81 (213)
71 4djt_A GTP-binding nuclear pro 96.7 0.0013 4.6E-08 64.8 5.6 60 72-140 12-73 (218)
72 1puj_A YLQF, conserved hypothe 96.7 0.0014 4.8E-08 68.6 6.0 57 73-141 122-178 (282)
73 1x3s_A RAS-related protein RAB 96.7 0.0015 5.2E-08 62.8 5.7 60 72-139 16-75 (195)
74 1ky3_A GTP-binding protein YPT 96.7 0.0014 4.9E-08 62.0 5.4 64 69-139 6-69 (182)
75 2bme_A RAB4A, RAS-related prot 96.7 0.0012 4.3E-08 63.0 5.0 61 71-139 10-70 (186)
76 2gf9_A RAS-related protein RAB 96.7 0.0015 5.3E-08 62.8 5.6 60 73-140 24-83 (189)
77 1wxq_A GTP-binding protein; st 96.7 0.0011 3.8E-08 72.8 5.1 64 74-139 3-82 (397)
78 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0012 4E-08 64.7 4.7 62 71-140 8-69 (206)
79 2a9k_A RAS-related protein RAL 96.7 0.0021 7.2E-08 61.1 6.4 59 72-139 19-77 (187)
80 2fg5_A RAB-22B, RAS-related pr 96.7 0.0015 5E-08 63.4 5.3 60 72-139 24-83 (192)
81 1z06_A RAS-related protein RAB 96.7 0.0012 4E-08 63.7 4.6 59 73-139 22-80 (189)
82 3con_A GTPase NRAS; structural 96.7 0.0019 6.4E-08 62.1 5.9 57 74-139 24-80 (190)
83 2efe_B Small GTP-binding prote 96.7 0.0013 4.3E-08 62.5 4.6 61 71-139 12-72 (181)
84 2il1_A RAB12; G-protein, GDP, 96.7 0.0013 4.5E-08 63.8 4.8 58 74-139 29-86 (192)
85 2www_A Methylmalonic aciduria 96.7 0.00066 2.2E-08 73.3 2.9 25 69-93 72-96 (349)
86 2e87_A Hypothetical protein PH 96.7 0.0044 1.5E-07 66.9 9.4 62 69-140 165-226 (357)
87 2wji_A Ferrous iron transport 96.6 0.0018 6.1E-08 61.2 5.5 57 72-141 4-63 (165)
88 3oes_A GTPase rhebl1; small GT 96.6 0.0022 7.4E-08 62.6 6.3 61 71-140 24-84 (201)
89 4a9a_A Ribosome-interacting GT 96.6 0.0014 4.9E-08 71.3 5.4 57 70-139 71-130 (376)
90 3t1o_A Gliding protein MGLA; G 96.6 0.008 2.7E-07 57.6 10.2 68 70-139 13-85 (198)
91 3tkl_A RAS-related protein RAB 96.6 0.0016 5.4E-08 62.8 5.1 63 69-139 14-76 (196)
92 2cxx_A Probable GTP-binding pr 96.6 0.0017 5.7E-08 62.2 5.2 54 73-140 3-56 (190)
93 2x2e_A Dynamin-1; nitration, h 96.6 0.0011 3.6E-08 71.6 4.1 26 70-95 30-55 (353)
94 3bc1_A RAS-related protein RAB 96.6 0.0027 9.2E-08 60.7 6.6 64 71-139 11-81 (195)
95 2ew1_A RAS-related protein RAB 96.6 0.0015 5.1E-08 64.3 4.8 60 72-139 27-86 (201)
96 1oix_A RAS-related protein RAB 96.6 0.0021 7.1E-08 62.5 5.7 62 70-139 28-89 (191)
97 2dfs_A Myosin-5A; myosin-V, in 96.6 0.04 1.4E-06 67.8 18.0 37 54-91 140-176 (1080)
98 2f9l_A RAB11B, member RAS onco 96.6 0.0019 6.4E-08 63.0 5.1 61 71-139 5-65 (199)
99 3vkg_A Dynein heavy chain, cyt 96.5 0.7 2.4E-05 62.4 30.3 30 65-97 1301-1330(3245)
100 3q72_A GTP-binding protein RAD 96.5 0.0023 7.9E-08 59.8 5.3 58 73-140 4-61 (166)
101 1upt_A ARL1, ADP-ribosylation 96.5 0.003 1E-07 59.2 6.1 55 72-139 8-62 (171)
102 2yc2_C IFT27, small RAB-relate 96.5 0.001 3.4E-08 64.8 2.8 62 72-139 21-84 (208)
103 2p5s_A RAS and EF-hand domain 96.5 0.0018 6.3E-08 63.1 4.6 60 72-139 29-88 (199)
104 2qm8_A GTPase/ATPase; G protei 96.5 0.0034 1.2E-07 67.4 7.0 34 60-93 44-77 (337)
105 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0034 1.2E-07 59.6 6.4 59 73-140 7-65 (186)
106 3kkq_A RAS-related protein M-R 96.5 0.0052 1.8E-07 58.5 7.6 62 69-139 16-77 (183)
107 2q3h_A RAS homolog gene family 96.5 0.0036 1.2E-07 60.8 6.6 60 72-140 21-80 (201)
108 2o52_A RAS-related protein RAB 96.5 0.0016 5.4E-08 63.7 3.9 59 73-139 27-85 (200)
109 3qq5_A Small GTP-binding prote 96.5 0.0038 1.3E-07 69.1 7.4 64 71-142 34-97 (423)
110 2atv_A RERG, RAS-like estrogen 96.5 0.006 2.1E-07 59.1 8.1 59 72-139 29-87 (196)
111 2qpt_A EH domain-containing pr 96.5 0.0059 2E-07 69.9 9.2 26 70-95 64-89 (550)
112 2aka_B Dynamin-1; fusion prote 96.5 0.0017 5.8E-08 67.6 4.4 26 70-95 25-50 (299)
113 1pui_A ENGB, probable GTP-bind 96.4 0.0082 2.8E-07 58.6 8.9 25 71-95 26-50 (210)
114 2wjg_A FEOB, ferrous iron tran 96.4 0.0038 1.3E-07 59.8 6.3 60 72-141 8-67 (188)
115 2lkc_A Translation initiation 96.4 0.0033 1.1E-07 59.4 5.7 62 70-141 7-68 (178)
116 2dfs_A Myosin-5A; myosin-V, in 96.4 0.079 2.7E-06 65.1 19.1 18 126-143 429-446 (1080)
117 3ol1_A Vimentin; structural ge 96.4 0.12 4.2E-06 46.7 15.7 85 502-590 25-109 (119)
118 3llu_A RAS-related GTP-binding 96.4 0.0086 3E-07 58.1 8.7 59 74-140 23-81 (196)
119 3reg_A RHO-like small GTPase; 96.4 0.003 1E-07 61.0 5.3 60 71-139 23-82 (194)
120 2qag_A Septin-2, protein NEDD5 96.4 0.0026 8.9E-08 68.9 5.2 63 74-140 40-107 (361)
121 3cbq_A GTP-binding protein REM 96.3 0.0049 1.7E-07 60.1 6.7 63 69-139 21-83 (195)
122 3c5c_A RAS-like protein 12; GD 96.3 0.0038 1.3E-07 60.3 5.8 58 73-139 23-80 (187)
123 2hxs_A RAB-26, RAS-related pro 96.3 0.00089 3E-08 63.4 1.2 62 71-139 6-67 (178)
124 2gco_A H9, RHO-related GTP-bin 96.3 0.0044 1.5E-07 60.4 6.3 58 74-140 28-85 (201)
125 1ksh_A ARF-like protein 2; sma 96.3 0.0043 1.5E-07 59.3 6.1 57 70-139 17-73 (186)
126 2a5j_A RAS-related protein RAB 96.3 0.0023 8E-08 61.8 4.2 59 73-139 23-81 (191)
127 4bas_A ADP-ribosylation factor 96.3 0.0035 1.2E-07 60.5 5.5 58 72-140 18-75 (199)
128 2qtf_A Protein HFLX, GTP-bindi 96.3 0.0033 1.1E-07 68.2 5.7 55 70-138 178-236 (364)
129 2ged_A SR-beta, signal recogni 96.3 0.0014 4.7E-08 63.2 2.4 26 70-95 47-72 (193)
130 3l0i_B RAS-related protein RAB 96.3 0.00082 2.8E-08 65.6 0.8 62 71-140 33-94 (199)
131 3zvr_A Dynamin-1; hydrolase, D 96.3 0.002 6.7E-08 76.2 4.1 26 70-95 50-75 (772)
132 2fv8_A H6, RHO-related GTP-bin 96.3 0.0042 1.4E-07 60.9 5.8 59 73-140 27-85 (207)
133 2f7s_A C25KG, RAS-related prot 96.3 0.0025 8.7E-08 62.8 4.3 61 73-138 27-94 (217)
134 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0041 1.4E-07 59.6 5.6 61 71-140 7-67 (184)
135 3ihw_A Centg3; RAS, centaurin, 96.3 0.0041 1.4E-07 60.0 5.6 57 73-139 22-78 (184)
136 3cpj_B GTP-binding protein YPT 96.3 0.0027 9.3E-08 63.1 4.5 63 70-140 12-74 (223)
137 1zj6_A ADP-ribosylation factor 96.3 0.0053 1.8E-07 58.9 6.4 58 69-139 14-71 (187)
138 2h57_A ADP-ribosylation factor 96.3 0.0037 1.3E-07 60.2 5.3 56 74-140 24-79 (190)
139 4dcu_A GTP-binding protein ENG 96.3 0.0046 1.6E-07 69.0 6.7 55 72-139 24-82 (456)
140 2fu5_C RAS-related protein RAB 96.3 0.0014 4.8E-08 62.5 2.2 62 70-139 7-68 (183)
141 1mky_A Probable GTP-binding pr 96.2 0.0038 1.3E-07 69.4 5.9 57 72-139 181-239 (439)
142 3cnl_A YLQF, putative uncharac 96.2 0.0018 6.3E-08 66.9 3.0 57 73-141 101-157 (262)
143 1m2o_B GTP-binding protein SAR 96.2 0.006 2E-07 59.1 6.5 55 73-140 25-79 (190)
144 1f6b_A SAR1; gtpases, N-termin 96.2 0.0046 1.6E-07 60.4 5.6 56 69-139 24-80 (198)
145 3b1v_A Ferrous iron uptake tra 96.2 0.0048 1.7E-07 64.1 6.1 55 72-141 4-62 (272)
146 2iwr_A Centaurin gamma 1; ANK 96.2 0.0038 1.3E-07 59.2 4.8 58 72-139 8-65 (178)
147 2hup_A RAS-related protein RAB 96.2 0.0026 8.8E-08 62.3 3.7 60 72-139 30-89 (201)
148 3swk_A Vimentin; cytoskeleton, 96.2 0.056 1.9E-06 46.1 11.4 80 503-586 6-85 (86)
149 1zd9_A ADP-ribosylation factor 96.2 0.0042 1.4E-07 59.8 5.1 55 73-139 24-78 (188)
150 1jal_A YCHF protein; nucleotid 96.2 0.0038 1.3E-07 67.6 5.1 64 73-139 4-77 (363)
151 1nrj_B SR-beta, signal recogni 96.1 0.0025 8.6E-08 62.9 3.3 57 70-140 11-67 (218)
152 3gee_A MNME, tRNA modification 96.1 0.0024 8.1E-08 71.9 3.5 61 69-139 232-292 (476)
153 2j0v_A RAC-like GTP-binding pr 96.1 0.0073 2.5E-07 59.2 6.7 61 71-140 9-69 (212)
154 3ghg_A Fibrinogen alpha chain; 96.1 0.057 1.9E-06 59.4 14.0 118 585-719 57-189 (562)
155 2atx_A Small GTP binding prote 96.1 0.0075 2.6E-07 58.1 6.6 60 72-140 19-78 (194)
156 1gwn_A RHO-related GTP-binding 96.1 0.0053 1.8E-07 60.5 5.6 59 73-140 30-88 (205)
157 4gzl_A RAS-related C3 botulinu 96.1 0.0055 1.9E-07 60.1 5.5 59 73-140 32-90 (204)
158 1r8s_A ADP-ribosylation factor 96.1 0.0062 2.1E-07 56.6 5.6 53 74-139 3-55 (164)
159 2h17_A ADP-ribosylation factor 96.1 0.007 2.4E-07 57.8 6.1 53 74-140 24-77 (181)
160 3ec1_A YQEH GTPase; atnos1, at 96.0 0.0039 1.3E-07 67.8 4.5 57 74-141 165-225 (369)
161 2j1l_A RHO-related GTP-binding 96.0 0.0063 2.1E-07 60.1 5.6 59 72-139 35-93 (214)
162 2fh5_B SR-beta, signal recogni 96.0 0.0085 2.9E-07 58.8 6.5 58 72-139 8-65 (214)
163 2g3y_A GTP-binding protein GEM 96.0 0.0075 2.6E-07 60.1 6.0 62 71-139 37-98 (211)
164 1moz_A ARL1, ADP-ribosylation 96.0 0.0058 2E-07 58.1 5.0 57 70-140 17-74 (183)
165 2x77_A ADP-ribosylation factor 96.0 0.012 4.3E-07 56.3 7.4 67 62-141 12-79 (189)
166 3bwd_D RAC-like GTP-binding pr 96.0 0.0037 1.3E-07 59.3 3.5 59 73-140 10-68 (182)
167 2fxo_A Myosin heavy chain, car 96.0 0.67 2.3E-05 42.4 18.6 108 546-657 16-123 (129)
168 3s84_A Apolipoprotein A-IV; fo 96.0 1.8 6.2E-05 44.7 28.1 76 650-728 192-271 (273)
169 1xzp_A Probable tRNA modificat 96.0 0.0062 2.1E-07 68.6 5.8 58 73-139 245-302 (482)
170 1mky_A Probable GTP-binding pr 95.9 0.0075 2.6E-07 66.9 6.3 56 73-140 3-61 (439)
171 2cjw_A GTP-binding protein GEM 95.9 0.0036 1.2E-07 60.9 3.1 64 70-140 5-68 (192)
172 3dz8_A RAS-related protein RAB 95.9 0.0035 1.2E-07 60.5 2.9 58 73-138 25-82 (191)
173 3o0z_A RHO-associated protein 95.9 1.2 4.2E-05 42.2 20.1 137 565-724 7-147 (168)
174 3h2y_A GTPase family protein; 95.9 0.0051 1.7E-07 66.8 4.5 57 74-141 163-224 (368)
175 3p32_A Probable GTPase RV1496/ 95.9 0.0065 2.2E-07 65.5 5.3 27 67-93 75-101 (355)
176 2hjg_A GTP-binding protein ENG 95.8 0.0075 2.6E-07 66.8 5.8 59 72-139 4-62 (436)
177 1fzq_A ADP-ribosylation factor 95.8 0.0084 2.9E-07 57.4 5.4 58 69-139 14-71 (181)
178 1tq4_A IIGP1, interferon-induc 95.8 0.0065 2.2E-07 67.0 5.1 61 70-139 68-131 (413)
179 3geh_A MNME, tRNA modification 95.8 0.002 6.9E-08 72.1 0.7 60 70-139 224-283 (462)
180 3r7w_A Gtpase1, GTP-binding pr 95.8 0.0093 3.2E-07 62.9 5.8 58 74-139 6-63 (307)
181 3q3j_B RHO-related GTP-binding 95.7 0.011 3.7E-07 58.5 6.0 59 73-140 29-87 (214)
182 3oja_B Anopheles plasmodium-re 95.5 0.071 2.4E-06 61.1 12.7 60 565-624 457-516 (597)
183 2p67_A LAO/AO transport system 95.5 0.012 4.1E-07 63.1 5.7 26 68-93 53-78 (341)
184 1ni3_A YCHF GTPase, YCHF GTP-b 95.5 0.03 1E-06 61.2 8.7 65 73-139 22-96 (392)
185 4dcu_A GTP-binding protein ENG 95.5 0.039 1.3E-06 61.5 9.8 59 70-140 194-255 (456)
186 2hjg_A GTP-binding protein ENG 95.4 0.019 6.4E-07 63.6 6.9 61 71-140 175-235 (436)
187 2b6h_A ADP-ribosylation factor 95.4 0.013 4.5E-07 56.7 4.9 57 70-139 28-84 (192)
188 2ocy_A RAB guanine nucleotide 95.3 1.9 6.4E-05 40.5 21.0 34 661-694 109-142 (154)
189 2qag_C Septin-7; cell cycle, c 95.3 0.021 7E-07 63.1 6.8 63 74-140 34-100 (418)
190 3gj0_A GTP-binding nuclear pro 95.3 0.0048 1.6E-07 61.1 1.5 61 71-139 15-75 (221)
191 2h5e_A Peptide chain release f 95.3 0.028 9.7E-07 63.9 8.0 68 70-140 12-94 (529)
192 2ohf_A Protein OLA1, GTP-bindi 95.2 0.019 6.4E-07 62.8 5.8 64 73-139 24-97 (396)
193 4dkx_A RAS-related protein RAB 95.2 0.016 5.3E-07 58.0 4.8 58 74-139 16-73 (216)
194 2ocy_A RAB guanine nucleotide 95.1 2.2 7.5E-05 40.0 19.8 133 521-657 16-148 (154)
195 3sop_A Neuronal-specific septi 95.1 0.013 4.4E-07 60.8 4.2 22 73-94 4-25 (270)
196 1lnz_A SPO0B-associated GTP-bi 95.1 0.014 4.7E-07 62.8 4.4 57 71-139 158-217 (342)
197 2j37_W Signal recognition part 95.1 0.017 5.8E-07 65.2 5.3 24 69-92 99-122 (504)
198 2qag_B Septin-6, protein NEDD5 95.1 0.023 7.9E-07 62.7 6.2 27 69-95 40-66 (427)
199 1lvg_A Guanylate kinase, GMP k 94.9 0.0073 2.5E-07 59.4 1.6 31 73-103 6-39 (198)
200 3a00_A Guanylate kinase, GMP k 94.9 0.0061 2.1E-07 59.1 1.0 23 73-95 3-25 (186)
201 2wkq_A NPH1-1, RAS-related C3 94.9 0.032 1.1E-06 58.5 6.6 61 71-140 155-215 (332)
202 3p26_A Elongation factor 1 alp 94.8 0.037 1.3E-06 62.1 7.2 28 68-95 30-57 (483)
203 2qnr_A Septin-2, protein NEDD5 94.8 0.02 6.8E-07 60.3 4.7 21 74-94 21-41 (301)
204 1kgd_A CASK, peripheral plasma 94.8 0.011 3.7E-07 57.0 2.4 23 73-95 7-29 (180)
205 3th5_A RAS-related C3 botulinu 93.8 0.005 1.7E-07 60.0 0.0 59 73-140 32-90 (204)
206 3oja_B Anopheles plasmodium-re 94.8 0.4 1.4E-05 54.8 15.9 24 572-595 450-473 (597)
207 3dpu_A RAB family protein; roc 94.7 0.026 8.7E-07 64.2 5.7 64 71-139 41-109 (535)
208 1u0l_A Probable GTPase ENGC; p 94.7 0.028 9.5E-07 59.1 5.5 23 73-95 171-193 (301)
209 2dby_A GTP-binding protein; GD 94.7 0.038 1.3E-06 59.9 6.6 21 74-94 4-24 (368)
210 3sjy_A Translation initiation 94.7 0.073 2.5E-06 58.2 9.0 26 69-94 6-31 (403)
211 2ywe_A GTP-binding protein LEP 94.7 0.04 1.4E-06 63.6 7.1 104 70-178 5-118 (600)
212 2xex_A Elongation factor G; GT 94.7 0.048 1.6E-06 64.1 7.9 25 69-93 8-32 (693)
213 3ney_A 55 kDa erythrocyte memb 94.6 0.013 4.3E-07 58.1 2.3 24 73-96 21-44 (197)
214 3cb4_D GTP-binding protein LEP 94.5 0.044 1.5E-06 63.2 7.0 104 70-178 3-116 (599)
215 3tr5_A RF-3, peptide chain rel 94.5 0.024 8.1E-07 64.5 4.6 24 70-93 12-35 (528)
216 2b9c_A Striated-muscle alpha t 94.5 0.44 1.5E-05 44.7 12.4 110 566-694 5-114 (147)
217 1t9h_A YLOQ, probable GTPase E 94.4 0.012 4.3E-07 62.1 1.9 22 73-94 175-196 (307)
218 3tnu_B Keratin, type II cytosk 94.4 1 3.4E-05 41.2 14.5 64 509-572 34-97 (129)
219 1kk1_A EIF2gamma; initiation o 94.4 0.089 3E-06 57.6 8.8 28 68-95 7-34 (410)
220 1udx_A The GTP-binding protein 94.3 0.031 1.1E-06 61.6 4.9 57 71-139 157-216 (416)
221 3c8u_A Fructokinase; YP_612366 94.3 0.025 8.4E-07 55.8 3.6 28 68-95 19-46 (208)
222 2b9c_A Striated-muscle alpha t 94.2 0.93 3.2E-05 42.4 13.9 40 568-607 42-81 (147)
223 1wb1_A Translation elongation 94.2 0.057 1.9E-06 60.7 6.7 96 72-180 20-120 (482)
224 3ghg_A Fibrinogen alpha chain; 94.2 0.39 1.3E-05 52.9 12.8 11 689-699 217-227 (562)
225 2c78_A Elongation factor TU-A; 94.1 0.038 1.3E-06 60.5 5.2 26 69-94 9-34 (405)
226 1zun_B Sulfate adenylate trans 94.1 0.088 3E-06 58.2 8.1 27 69-95 22-48 (434)
227 3u59_A Tropomyosin beta chain; 94.1 1.4 4.7E-05 38.5 14.2 26 561-586 6-31 (101)
228 3izy_P Translation initiation 94.1 0.0089 3E-07 68.1 -0.1 61 73-142 6-66 (537)
229 2yv5_A YJEQ protein; hydrolase 94.0 0.053 1.8E-06 57.0 5.9 20 73-92 167-186 (302)
230 3u1c_A Tropomyosin alpha-1 cha 94.0 2.3 8E-05 37.1 15.4 27 560-586 5-31 (101)
231 3lvq_E ARF-GAP with SH3 domain 94.0 0.05 1.7E-06 61.0 5.9 56 72-140 323-378 (497)
232 3o47_A ADP-ribosylation factor 94.0 0.031 1.1E-06 59.5 4.0 54 73-139 167-220 (329)
233 3tnu_A Keratin, type I cytoske 94.0 0.94 3.2E-05 41.5 13.4 66 509-574 36-101 (131)
234 3tif_A Uncharacterized ABC tra 93.9 0.027 9.1E-07 57.1 3.1 23 73-95 33-55 (235)
235 3s84_A Apolipoprotein A-IV; fo 93.9 6.7 0.00023 40.4 31.3 57 644-700 164-224 (273)
236 1r5b_A Eukaryotic peptide chai 93.9 0.027 9.1E-07 63.1 3.3 40 53-94 27-66 (467)
237 2rdo_7 EF-G, elongation factor 93.8 0.15 5.1E-06 60.0 9.7 71 70-140 9-94 (704)
238 3izq_1 HBS1P, elongation facto 93.8 0.073 2.5E-06 61.6 6.9 26 70-95 166-191 (611)
239 3tr0_A Guanylate kinase, GMP k 93.8 0.024 8.3E-07 55.1 2.4 23 73-95 9-31 (205)
240 3j2k_7 ERF3, eukaryotic polype 93.7 0.11 3.7E-06 57.6 7.8 26 70-95 16-41 (439)
241 3tau_A Guanylate kinase, GMP k 93.6 0.027 9.3E-07 55.6 2.6 24 72-95 9-32 (208)
242 2pcj_A ABC transporter, lipopr 93.6 0.029 1E-06 56.3 2.8 23 73-95 32-54 (224)
243 1dar_A EF-G, elongation factor 93.6 0.097 3.3E-06 61.5 7.6 25 69-93 10-34 (691)
244 1znw_A Guanylate kinase, GMP k 93.5 0.028 9.5E-07 55.4 2.4 23 73-95 22-44 (207)
245 2onk_A Molybdate/tungstate ABC 93.5 0.033 1.1E-06 56.7 2.9 26 69-95 23-48 (240)
246 3u59_A Tropomyosin beta chain; 93.4 3 0.0001 36.3 15.1 29 615-643 42-70 (101)
247 2efr_A General control protein 93.4 5.2 0.00018 37.6 24.1 109 549-661 41-149 (155)
248 1g6h_A High-affinity branched- 93.4 0.036 1.2E-06 56.9 3.1 23 73-95 35-57 (257)
249 2yyz_A Sugar ABC transporter, 93.4 0.058 2E-06 58.2 4.8 23 73-95 31-53 (359)
250 2pze_A Cystic fibrosis transme 93.3 0.039 1.3E-06 55.6 3.1 23 73-95 36-58 (229)
251 1sgw_A Putative ABC transporte 93.3 0.033 1.1E-06 55.7 2.6 23 73-95 37-59 (214)
252 2cbz_A Multidrug resistance-as 93.3 0.039 1.3E-06 56.0 3.1 23 73-95 33-55 (237)
253 4gp7_A Metallophosphoesterase; 93.3 0.041 1.4E-06 52.6 3.1 22 72-93 10-31 (171)
254 2i3b_A HCR-ntpase, human cance 93.3 0.028 9.6E-07 55.0 1.9 22 73-94 3-24 (189)
255 4g1u_C Hemin import ATP-bindin 93.3 0.039 1.3E-06 57.0 3.1 23 73-95 39-61 (266)
256 3asz_A Uridine kinase; cytidin 93.3 0.03 1E-06 55.0 2.1 25 70-94 5-29 (211)
257 1b0u_A Histidine permease; ABC 93.3 0.04 1.4E-06 56.8 3.1 23 73-95 34-56 (262)
258 3gfo_A Cobalt import ATP-bindi 93.2 0.04 1.4E-06 57.3 3.1 23 73-95 36-58 (275)
259 2elf_A Protein translation elo 93.2 0.16 5.5E-06 55.0 8.1 20 73-92 23-42 (370)
260 1v43_A Sugar-binding transport 93.2 0.069 2.4E-06 57.9 5.1 23 73-95 39-61 (372)
261 1s0u_A EIF-2-gamma, translatio 93.2 0.13 4.4E-06 56.3 7.4 27 69-95 6-32 (408)
262 1vpl_A ABC transporter, ATP-bi 93.2 0.042 1.4E-06 56.4 3.1 23 73-95 43-65 (256)
263 1ji0_A ABC transporter; ATP bi 93.2 0.042 1.4E-06 55.8 3.1 23 73-95 34-56 (240)
264 1mv5_A LMRA, multidrug resista 93.2 0.043 1.5E-06 55.8 3.1 24 72-95 29-52 (243)
265 2it1_A 362AA long hypothetical 93.1 0.068 2.3E-06 57.8 4.9 23 73-95 31-53 (362)
266 3b85_A Phosphate starvation-in 93.1 0.034 1.2E-06 55.3 2.2 22 73-94 24-45 (208)
267 2ff7_A Alpha-hemolysin translo 93.0 0.045 1.5E-06 55.9 3.1 23 73-95 37-59 (247)
268 2olj_A Amino acid ABC transpor 93.0 0.046 1.6E-06 56.4 3.1 23 73-95 52-74 (263)
269 2qi9_C Vitamin B12 import ATP- 93.0 0.047 1.6E-06 55.9 3.1 23 73-95 28-50 (249)
270 2d2e_A SUFC protein; ABC-ATPas 92.9 0.047 1.6E-06 55.7 3.1 22 73-94 31-52 (250)
271 1zp6_A Hypothetical protein AT 92.9 0.047 1.6E-06 52.5 2.8 23 72-94 10-32 (191)
272 1z6g_A Guanylate kinase; struc 92.9 0.033 1.1E-06 55.5 1.8 23 73-95 25-47 (218)
273 2nq2_C Hypothetical ABC transp 92.9 0.049 1.7E-06 55.8 3.1 23 73-95 33-55 (253)
274 1ye8_A Protein THEP1, hypothet 92.8 0.043 1.5E-06 53.1 2.4 23 73-95 2-24 (178)
275 2zu0_C Probable ATP-dependent 92.8 0.051 1.8E-06 56.1 3.2 22 73-94 48-69 (267)
276 1s96_A Guanylate kinase, GMP k 92.8 0.043 1.5E-06 55.0 2.4 23 73-95 18-40 (219)
277 2ixe_A Antigen peptide transpo 92.8 0.051 1.7E-06 56.3 3.1 23 73-95 47-69 (271)
278 1n0u_A EF-2, elongation factor 92.7 0.18 6E-06 60.6 8.2 27 68-94 16-42 (842)
279 2yz2_A Putative ABC transporte 92.7 0.053 1.8E-06 56.0 3.1 23 73-95 35-57 (266)
280 2kjq_A DNAA-related protein; s 92.7 0.042 1.4E-06 51.5 2.1 37 56-94 23-59 (149)
281 2ghi_A Transport protein; mult 92.7 0.054 1.8E-06 55.7 3.1 23 73-95 48-70 (260)
282 2ihy_A ABC transporter, ATP-bi 92.7 0.055 1.9E-06 56.3 3.1 23 73-95 49-71 (279)
283 3mca_A HBS1, elongation factor 92.6 0.045 1.5E-06 63.1 2.7 26 68-93 174-199 (592)
284 1g7s_A Translation initiation 92.5 0.087 3E-06 60.7 4.9 101 73-180 7-117 (594)
285 3aez_A Pantothenate kinase; tr 92.4 0.049 1.7E-06 57.7 2.4 26 69-94 88-113 (312)
286 2jeo_A Uridine-cytidine kinase 92.3 0.052 1.8E-06 54.9 2.4 24 71-94 25-48 (245)
287 2eyu_A Twitching motility prot 92.2 0.057 2E-06 55.6 2.6 33 60-94 16-48 (261)
288 1zo1_I IF2, translation initia 92.2 0.033 1.1E-06 62.8 0.9 22 73-94 6-27 (501)
289 3c5h_A Glucocorticoid receptor 92.1 0.098 3.4E-06 53.3 4.2 21 74-94 22-51 (255)
290 1jny_A EF-1-alpha, elongation 92.1 0.064 2.2E-06 59.3 3.0 30 69-98 4-33 (435)
291 1nij_A Hypothetical protein YJ 92.0 0.071 2.4E-06 56.4 3.2 28 70-97 3-30 (318)
292 2v66_B Nuclear distribution pr 92.0 4.3 0.00015 36.0 14.0 70 510-579 2-71 (111)
293 1d2e_A Elongation factor TU (E 92.0 0.18 6.1E-06 55.0 6.3 24 71-94 3-26 (397)
294 2j41_A Guanylate kinase; GMP, 91.9 0.063 2.1E-06 52.1 2.4 23 73-95 8-30 (207)
295 3dm5_A SRP54, signal recogniti 91.9 0.19 6.4E-06 55.7 6.4 23 70-92 99-121 (443)
296 1htw_A HI0065; nucleotide-bind 91.9 0.066 2.2E-06 50.8 2.4 27 69-95 31-57 (158)
297 2bdt_A BH3686; alpha-beta prot 91.9 0.059 2E-06 51.8 2.1 22 73-94 4-25 (189)
298 2rcn_A Probable GTPase ENGC; Y 91.8 0.077 2.7E-06 57.2 3.2 23 73-95 217-239 (358)
299 2pjz_A Hypothetical protein ST 91.8 0.08 2.7E-06 54.6 3.1 22 73-94 32-53 (263)
300 1ex7_A Guanylate kinase; subst 91.7 0.06 2E-06 52.6 1.9 33 74-106 4-39 (186)
301 3nh6_A ATP-binding cassette SU 91.7 0.059 2E-06 56.9 2.0 23 73-95 82-104 (306)
302 3s4r_A Vimentin; alpha-helix, 91.7 3.1 0.00011 35.7 12.5 41 546-586 52-92 (93)
303 3lnc_A Guanylate kinase, GMP k 91.7 0.061 2.1E-06 53.7 2.0 23 73-95 29-52 (231)
304 2dy1_A Elongation factor G; tr 91.7 0.27 9.2E-06 57.4 7.8 26 69-94 7-32 (665)
305 1f60_A Elongation factor EEF1A 91.6 0.13 4.4E-06 57.3 4.9 29 70-98 6-34 (458)
306 2v9p_A Replication protein E1; 91.6 0.067 2.3E-06 56.5 2.3 24 72-95 127-150 (305)
307 2bbs_A Cystic fibrosis transme 91.5 0.081 2.8E-06 55.4 2.8 23 73-95 66-88 (290)
308 2qor_A Guanylate kinase; phosp 91.4 0.045 1.5E-06 53.6 0.8 23 73-95 14-36 (204)
309 3rlf_A Maltose/maltodextrin im 91.4 0.15 5.2E-06 55.4 5.0 23 73-95 31-53 (381)
310 2v3c_C SRP54, signal recogniti 91.4 0.13 4.6E-06 56.8 4.6 24 70-93 98-121 (432)
311 1j8m_F SRP54, signal recogniti 91.3 0.099 3.4E-06 54.9 3.3 23 71-93 98-120 (297)
312 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.096 3.3E-06 55.8 3.1 23 73-95 173-195 (330)
313 1kag_A SKI, shikimate kinase I 91.2 0.072 2.4E-06 50.3 1.8 23 73-95 6-28 (173)
314 2qt1_A Nicotinamide riboside k 91.2 0.12 4.1E-06 50.5 3.6 26 70-95 20-45 (207)
315 1p9r_A General secretion pathw 91.1 0.12 4.1E-06 56.9 3.8 41 54-94 149-190 (418)
316 2oap_1 GSPE-2, type II secreti 91.1 0.08 2.7E-06 59.9 2.4 39 56-95 245-284 (511)
317 2bbw_A Adenylate kinase 4, AK4 91.0 0.11 3.7E-06 52.4 3.2 22 71-92 27-48 (246)
318 4a74_A DNA repair and recombin 91.0 0.081 2.8E-06 52.1 2.1 22 72-93 26-47 (231)
319 3oja_A Leucine-rich immune mol 91.0 9 0.00031 42.4 19.2 12 458-469 322-333 (487)
320 4eun_A Thermoresistant glucoki 91.0 0.091 3.1E-06 51.2 2.4 23 72-94 30-52 (200)
321 3lw7_A Adenylate kinase relate 91.0 0.083 2.8E-06 49.3 2.1 25 73-99 3-27 (179)
322 3tui_C Methionine import ATP-b 90.9 0.11 3.7E-06 56.2 3.2 23 73-95 56-78 (366)
323 2xxa_A Signal recognition part 90.9 0.15 5E-06 56.5 4.3 24 69-92 98-121 (433)
324 2gza_A Type IV secretion syste 90.9 0.12 4.3E-06 55.6 3.6 23 73-95 177-199 (361)
325 1sq5_A Pantothenate kinase; P- 90.9 0.083 2.8E-06 55.6 2.2 26 69-94 78-103 (308)
326 3jvv_A Twitching mobility prot 90.9 0.094 3.2E-06 56.5 2.6 25 70-94 122-146 (356)
327 3kl4_A SRP54, signal recogniti 90.8 0.2 6.8E-06 55.4 5.2 23 70-92 96-118 (433)
328 1z47_A CYSA, putative ABC-tran 90.8 0.11 3.8E-06 55.9 3.1 23 73-95 43-65 (355)
329 1jjv_A Dephospho-COA kinase; P 90.7 0.14 4.7E-06 49.9 3.4 22 72-93 3-24 (206)
330 4e22_A Cytidylate kinase; P-lo 90.6 0.12 4.3E-06 52.5 3.2 23 70-92 26-48 (252)
331 3fvq_A Fe(3+) IONS import ATP- 90.6 0.11 3.7E-06 56.1 2.8 23 73-95 32-54 (359)
332 2eqb_B RAB guanine nucleotide 90.5 6.4 0.00022 33.9 13.1 90 583-693 3-95 (97)
333 1np6_A Molybdopterin-guanine d 90.5 0.081 2.8E-06 51.1 1.6 24 71-94 6-29 (174)
334 2ehv_A Hypothetical protein PH 90.4 0.13 4.4E-06 51.3 3.0 20 73-92 32-51 (251)
335 1g29_1 MALK, maltose transport 90.4 0.13 4.3E-06 55.9 3.1 23 73-95 31-53 (372)
336 3tqc_A Pantothenate kinase; bi 90.3 0.13 4.3E-06 54.7 3.0 25 70-94 91-115 (321)
337 1rz3_A Hypothetical protein rb 90.2 0.16 5.4E-06 49.6 3.4 26 69-94 20-45 (201)
338 1cke_A CK, MSSA, protein (cyti 90.2 0.12 4E-06 51.1 2.4 22 73-94 7-28 (227)
339 2e7s_A RAB guanine nucleotide 90.0 1.4 4.7E-05 40.4 9.1 36 660-695 96-131 (135)
340 2e7s_A RAB guanine nucleotide 90.0 0.83 2.8E-05 41.8 7.6 80 566-645 48-131 (135)
341 3uie_A Adenylyl-sulfate kinase 89.9 0.18 6.2E-06 49.1 3.5 27 69-95 23-49 (200)
342 1knq_A Gluconate kinase; ALFA/ 89.9 0.13 4.4E-06 48.7 2.4 24 71-94 8-31 (175)
343 3d31_A Sulfate/molybdate ABC t 89.7 0.12 4E-06 55.6 2.1 23 73-95 28-50 (348)
344 3szr_A Interferon-induced GTP- 89.7 0.22 7.4E-06 57.6 4.5 25 71-95 45-69 (608)
345 1odf_A YGR205W, hypothetical 3 89.7 0.18 6.1E-06 52.7 3.5 26 69-94 29-54 (290)
346 1uf9_A TT1252 protein; P-loop, 89.6 0.16 5.5E-06 49.0 2.9 29 70-100 7-35 (203)
347 3mq9_A Bone marrow stromal ant 89.6 9.1 0.00031 42.1 17.6 32 556-587 403-434 (471)
348 3ec2_A DNA replication protein 89.3 0.14 4.8E-06 48.8 2.2 23 72-94 39-61 (180)
349 1rj9_A FTSY, signal recognitio 89.3 0.14 4.9E-06 53.8 2.4 24 71-94 102-125 (304)
350 2ewv_A Twitching motility prot 89.2 0.15 5.3E-06 55.1 2.6 26 69-94 134-159 (372)
351 2f1r_A Molybdopterin-guanine d 89.1 0.083 2.8E-06 50.8 0.3 23 72-94 3-25 (171)
352 1deq_A Fibrinogen (alpha chain 89.1 7 0.00024 41.6 14.9 50 612-661 108-157 (390)
353 3ozx_A RNAse L inhibitor; ATP 89.1 0.18 6.1E-06 57.4 3.1 23 72-94 26-48 (538)
354 1oxx_K GLCV, glucose, ABC tran 89.1 0.11 3.8E-06 55.9 1.3 23 73-95 33-55 (353)
355 2vp4_A Deoxynucleoside kinase; 89.1 0.15 5.3E-06 50.9 2.3 25 70-94 19-43 (230)
356 3kb2_A SPBC2 prophage-derived 89.0 0.2 6.7E-06 46.9 2.9 22 73-94 3-24 (173)
357 2if2_A Dephospho-COA kinase; a 89.0 0.15 5.1E-06 49.5 2.2 21 73-93 3-23 (204)
358 3mq9_A Bone marrow stromal ant 89.0 6.1 0.00021 43.6 15.6 62 563-624 396-457 (471)
359 3i00_A HIP-I, huntingtin-inter 89.0 3.3 0.00011 37.3 10.8 26 633-658 94-119 (120)
360 3gd7_A Fusion complex of cysti 89.0 0.17 5.9E-06 55.1 2.8 23 73-95 49-71 (390)
361 1xjc_A MOBB protein homolog; s 88.9 0.11 3.9E-06 49.9 1.1 31 70-100 3-35 (169)
362 3s4r_A Vimentin; alpha-helix, 88.9 8.4 0.00029 33.0 12.8 81 559-653 11-92 (93)
363 3avx_A Elongation factor TS, e 88.8 0.33 1.1E-05 59.7 5.3 26 69-94 294-319 (1289)
364 3b9q_A Chloroplast SRP recepto 88.8 0.16 5.6E-06 53.3 2.4 23 72-94 101-123 (302)
365 2wsm_A Hydrogenase expression/ 88.7 0.17 5.9E-06 49.6 2.4 41 54-94 11-53 (221)
366 3iox_A AGI/II, PA; alpha helix 88.4 8.6 0.0003 42.3 15.5 42 583-624 46-87 (497)
367 1ic2_A Tropomyosin alpha chain 88.3 5.3 0.00018 33.2 11.0 37 673-713 40-76 (81)
368 1yqt_A RNAse L inhibitor; ATP- 88.1 0.23 7.8E-06 56.5 3.2 22 73-94 49-70 (538)
369 3j16_B RLI1P; ribosome recycli 88.1 0.23 7.8E-06 57.4 3.2 22 73-94 105-126 (608)
370 3e70_C DPA, signal recognition 88.0 0.2 6.8E-06 53.4 2.4 25 70-94 128-152 (328)
371 1ic2_A Tropomyosin alpha chain 87.9 6.2 0.00021 32.8 11.2 33 614-646 38-70 (81)
372 2fxo_A Myosin heavy chain, car 87.6 16 0.00054 33.1 19.3 68 523-590 18-88 (129)
373 3bk7_A ABC transporter ATP-bin 87.4 0.26 8.9E-06 56.9 3.1 22 73-94 119-140 (607)
374 2a01_A Apolipoprotein A-I; fou 87.4 2.7 9.2E-05 42.6 10.3 13 461-473 10-22 (243)
375 1ly1_A Polynucleotide kinase; 87.3 0.3 1E-05 46.0 3.0 22 72-93 3-24 (181)
376 3haj_A Human pacsin2 F-BAR; pa 87.3 40 0.0014 37.3 26.4 104 525-632 136-239 (486)
377 2jee_A YIIU; FTSZ, septum, coi 87.1 7.9 0.00027 32.2 10.9 37 567-603 9-45 (81)
378 1lw7_A Transcriptional regulat 87.0 0.21 7.3E-06 53.6 2.0 25 71-95 170-194 (365)
379 2og2_A Putative signal recogni 87.0 0.25 8.4E-06 53.3 2.4 23 72-94 158-180 (359)
380 3t61_A Gluconokinase; PSI-biol 86.9 0.26 8.8E-06 47.9 2.4 23 72-94 19-41 (202)
381 2v54_A DTMP kinase, thymidylat 86.9 0.32 1.1E-05 47.0 3.0 27 73-99 6-32 (204)
382 2w0m_A SSO2452; RECA, SSPF, un 86.9 0.26 8.8E-06 48.3 2.4 22 73-94 25-46 (235)
383 3ozx_A RNAse L inhibitor; ATP 86.8 0.3 1E-05 55.5 3.1 23 73-95 296-318 (538)
384 2zqm_A Prefoldin beta subunit 86.7 9.6 0.00033 33.5 12.5 77 513-589 15-109 (117)
385 3bk7_A ABC transporter ATP-bin 86.4 0.32 1.1E-05 56.1 3.2 23 73-95 384-406 (607)
386 3euj_A Chromosome partition pr 86.4 0.27 9.2E-06 55.1 2.4 23 72-94 30-52 (483)
387 1yqt_A RNAse L inhibitor; ATP- 86.4 0.33 1.1E-05 55.2 3.2 23 73-95 314-336 (538)
388 2yhs_A FTSY, cell division pro 86.3 0.27 9.4E-06 55.1 2.4 23 72-94 294-316 (503)
389 2hf9_A Probable hydrogenase ni 86.2 0.36 1.2E-05 47.4 3.0 42 53-94 18-61 (226)
390 3b60_A Lipid A export ATP-bind 86.2 0.31 1.1E-05 55.9 2.9 23 73-95 371-393 (582)
391 3b5x_A Lipid A export ATP-bind 86.1 0.32 1.1E-05 55.7 3.0 23 73-95 371-393 (582)
392 1vht_A Dephospho-COA kinase; s 86.1 0.36 1.2E-05 47.4 3.0 22 72-93 5-26 (218)
393 2yl4_A ATP-binding cassette SU 86.1 0.31 1.1E-05 56.1 2.8 23 73-95 372-394 (595)
394 3exa_A TRNA delta(2)-isopenten 86.0 0.24 8.4E-06 52.3 1.7 63 73-138 5-68 (322)
395 3qf4_B Uncharacterized ABC tra 86.0 0.32 1.1E-05 56.0 2.9 24 72-95 382-405 (598)
396 1kht_A Adenylate kinase; phosp 85.8 0.39 1.3E-05 45.6 3.0 21 73-93 5-25 (192)
397 2jaq_A Deoxyguanosine kinase; 85.8 0.4 1.4E-05 46.1 3.0 22 73-94 2-23 (205)
398 3i00_A HIP-I, huntingtin-inter 85.7 4.2 0.00014 36.6 9.4 58 587-651 17-74 (120)
399 3j16_B RLI1P; ribosome recycli 85.7 0.37 1.3E-05 55.6 3.2 24 72-95 379-402 (608)
400 3r7w_B Gtpase2, GTP-binding pr 85.6 0.81 2.8E-05 48.6 5.5 58 74-141 2-59 (331)
401 2npi_A Protein CLP1; CLP1-PCF1 85.6 0.24 8.3E-06 55.2 1.5 23 73-95 140-162 (460)
402 1nks_A Adenylate kinase; therm 85.5 0.38 1.3E-05 45.7 2.7 23 72-94 2-24 (194)
403 4a82_A Cystic fibrosis transme 85.4 0.3 1E-05 56.0 2.2 23 73-95 369-391 (578)
404 1l8d_A DNA double-strand break 85.2 13 0.00043 32.6 12.4 33 614-646 68-100 (112)
405 3oja_A Leucine-rich immune mol 85.1 18 0.0006 40.0 16.6 19 510-528 338-356 (487)
406 3r6n_A Desmoplakin; spectrin r 84.9 51 0.0017 36.3 27.7 71 573-643 128-198 (450)
407 1cr0_A DNA primase/helicase; R 84.8 0.34 1.2E-05 50.1 2.1 22 73-94 37-58 (296)
408 3qf4_A ABC transporter, ATP-bi 84.7 0.36 1.2E-05 55.4 2.5 23 73-95 371-393 (587)
409 1x8y_A Lamin A/C; structural p 84.7 7.5 0.00026 32.8 10.1 26 581-606 38-63 (86)
410 3qh9_A Liprin-beta-2; coiled-c 84.7 8.9 0.0003 31.7 9.9 49 548-596 24-72 (81)
411 2ze6_A Isopentenyl transferase 84.6 0.47 1.6E-05 48.3 3.0 23 72-94 2-24 (253)
412 3cm0_A Adenylate kinase; ATP-b 84.6 0.49 1.7E-05 44.9 3.0 21 73-93 6-26 (186)
413 1svm_A Large T antigen; AAA+ f 84.4 0.41 1.4E-05 51.9 2.6 24 72-95 170-193 (377)
414 4fla_A Regulation of nuclear P 84.3 17 0.00057 34.0 13.3 71 524-594 67-137 (152)
415 1gtv_A TMK, thymidylate kinase 84.3 0.23 7.9E-06 48.3 0.5 22 73-94 2-23 (214)
416 1fxk_A Prefoldin; archaeal pro 84.3 13 0.00045 32.1 12.0 75 513-587 10-102 (107)
417 1tev_A UMP-CMP kinase; ploop, 84.3 0.52 1.8E-05 44.8 3.0 22 72-93 4-25 (196)
418 1qhx_A CPT, protein (chloramph 84.2 0.53 1.8E-05 44.3 3.0 22 73-94 5-26 (178)
419 2cvh_A DNA repair and recombin 84.1 0.43 1.5E-05 46.5 2.4 21 73-93 22-42 (220)
420 3vaa_A Shikimate kinase, SK; s 84.0 0.53 1.8E-05 45.6 3.0 25 70-94 24-48 (199)
421 2pez_A Bifunctional 3'-phospho 84.0 0.54 1.8E-05 44.6 3.0 23 72-94 6-28 (179)
422 2pbr_A DTMP kinase, thymidylat 84.0 0.52 1.8E-05 44.8 2.9 22 73-94 2-23 (195)
423 1n0w_A DNA repair protein RAD5 83.9 0.44 1.5E-05 47.1 2.4 22 73-94 26-47 (243)
424 3ake_A Cytidylate kinase; CMP 83.9 0.54 1.8E-05 45.4 3.0 22 73-94 4-25 (208)
425 3trt_A Vimentin; cytoskeleton, 83.8 8.2 0.00028 31.6 9.8 35 568-602 32-66 (77)
426 2z0h_A DTMP kinase, thymidylat 83.8 0.54 1.8E-05 44.9 2.9 22 73-94 2-23 (197)
427 3kta_A Chromosome segregation 83.7 0.52 1.8E-05 44.7 2.7 21 73-93 28-48 (182)
428 1gk4_A Vimentin; intermediate 83.6 18 0.00063 30.2 12.4 30 577-606 32-61 (84)
429 2plr_A DTMP kinase, probable t 83.6 0.57 1.9E-05 45.2 3.0 23 72-94 5-27 (213)
430 2rhm_A Putative kinase; P-loop 83.5 0.52 1.8E-05 44.9 2.7 23 72-94 6-28 (193)
431 4aby_A DNA repair protein RECN 83.4 0.18 6.3E-06 54.8 -0.7 20 73-92 62-81 (415)
432 2bwj_A Adenylate kinase 5; pho 83.3 0.54 1.8E-05 45.0 2.7 22 73-94 14-35 (199)
433 2l7b_A Apolipoprotein E, APO-E 83.0 1.1 3.9E-05 47.0 5.2 15 458-472 33-47 (307)
434 4gkw_A Spindle assembly abnorm 83.0 26 0.00089 31.5 17.1 96 500-604 50-145 (167)
435 2grj_A Dephospho-COA kinase; T 83.0 0.65 2.2E-05 45.3 3.2 26 69-94 10-35 (192)
436 2obl_A ESCN; ATPase, hydrolase 83.0 0.45 1.5E-05 51.0 2.2 36 58-95 59-95 (347)
437 3cvf_A Homer-3, homer protein 83.0 8 0.00027 32.1 9.2 27 620-646 9-35 (79)
438 2c95_A Adenylate kinase 1; tra 82.9 0.58 2E-05 44.7 2.7 23 72-94 10-32 (196)
439 1ukz_A Uridylate kinase; trans 82.7 0.74 2.5E-05 44.4 3.5 24 71-94 15-38 (203)
440 1uj2_A Uridine-cytidine kinase 82.6 0.61 2.1E-05 47.1 2.9 25 70-94 21-45 (252)
441 1nlf_A Regulatory protein REPA 82.6 0.48 1.6E-05 48.7 2.1 21 73-93 32-52 (279)
442 1e6c_A Shikimate kinase; phosp 82.5 0.56 1.9E-05 43.8 2.4 22 73-94 4-25 (173)
443 1qf9_A UMP/CMP kinase, protein 82.4 0.62 2.1E-05 44.2 2.7 23 72-94 7-29 (194)
444 2x8a_A Nuclear valosin-contain 82.3 0.5 1.7E-05 48.7 2.2 24 70-94 44-67 (274)
445 1via_A Shikimate kinase; struc 82.3 0.57 2E-05 44.2 2.4 22 73-94 6-27 (175)
446 2wwf_A Thymidilate kinase, put 82.3 0.6 2.1E-05 45.2 2.6 22 73-94 12-33 (212)
447 2dpy_A FLII, flagellum-specifi 82.2 0.49 1.7E-05 52.3 2.2 37 58-95 145-181 (438)
448 2iw3_A Elongation factor 3A; a 82.2 0.45 1.6E-05 57.6 2.0 23 73-95 701-723 (986)
449 3r20_A Cytidylate kinase; stru 82.1 0.69 2.3E-05 46.7 3.0 21 73-93 11-31 (233)
450 3bos_A Putative DNA replicatio 82.1 0.87 3E-05 44.6 3.8 39 56-94 35-75 (242)
451 1ixz_A ATP-dependent metallopr 82.1 0.53 1.8E-05 47.3 2.2 21 74-94 52-72 (254)
452 1m1j_B Fibrinogen beta chain; 82.0 38 0.0013 37.3 17.0 69 519-587 122-191 (464)
453 3eph_A TRNA isopentenyltransfe 81.7 0.53 1.8E-05 51.4 2.2 23 72-94 3-25 (409)
454 2yvu_A Probable adenylyl-sulfa 81.7 0.75 2.6E-05 43.8 3.0 25 70-94 12-36 (186)
455 2pt5_A Shikimate kinase, SK; a 81.7 0.76 2.6E-05 42.8 3.0 21 73-93 2-22 (168)
456 1nn5_A Similar to deoxythymidy 81.5 0.68 2.3E-05 44.9 2.7 22 73-94 11-32 (215)
457 3a7p_A Autophagy protein 16; c 81.4 17 0.00057 33.9 11.7 46 614-659 72-117 (152)
458 1qhl_A Protein (cell division 81.4 0.15 5E-06 51.5 -2.3 23 72-94 28-50 (227)
459 3fb4_A Adenylate kinase; psych 81.3 0.76 2.6E-05 44.8 3.0 22 73-94 2-23 (216)
460 3trf_A Shikimate kinase, SK; a 81.2 0.79 2.7E-05 43.4 3.0 22 73-94 7-28 (185)
461 3qh9_A Liprin-beta-2; coiled-c 81.0 12 0.00041 30.9 9.4 37 611-647 20-56 (81)
462 2iw3_A Elongation factor 3A; a 80.9 0.86 2.9E-05 55.2 3.8 21 73-93 463-483 (986)
463 1y63_A LMAJ004144AAA protein; 80.7 0.83 2.9E-05 43.6 3.0 22 73-94 12-33 (184)
464 1in4_A RUVB, holliday junction 80.7 0.54 1.9E-05 49.7 1.8 26 69-94 49-74 (334)
465 1f2t_A RAD50 ABC-ATPase; DNA d 80.6 0.96 3.3E-05 42.0 3.3 21 72-92 24-44 (149)
466 1zuh_A Shikimate kinase; alpha 80.6 0.87 3E-05 42.5 3.0 25 70-94 6-30 (168)
467 3iij_A Coilin-interacting nucl 80.5 0.71 2.4E-05 43.7 2.4 21 73-93 13-33 (180)
468 1deq_A Fibrinogen (alpha chain 80.5 60 0.0021 34.5 17.0 47 541-587 111-157 (390)
469 1a7j_A Phosphoribulokinase; tr 80.4 0.57 2E-05 48.8 1.8 22 72-93 6-27 (290)
470 2iyv_A Shikimate kinase, SK; t 80.4 0.67 2.3E-05 44.0 2.2 22 73-94 4-25 (184)
471 2f6r_A COA synthase, bifunctio 80.3 0.88 3E-05 47.0 3.2 22 71-92 75-96 (281)
472 2cdn_A Adenylate kinase; phosp 79.9 0.92 3.2E-05 43.8 3.0 22 73-94 22-43 (201)
473 3a8t_A Adenylate isopentenyltr 79.8 0.95 3.3E-05 48.2 3.3 64 73-138 42-105 (339)
474 1iy2_A ATP-dependent metallopr 79.7 0.71 2.4E-05 47.2 2.2 22 74-95 76-97 (278)
475 1zd8_A GTP:AMP phosphotransfer 79.6 0.87 3E-05 45.0 2.7 23 72-94 8-30 (227)
476 1pzn_A RAD51, DNA repair and r 79.6 0.69 2.3E-05 49.5 2.1 23 72-94 132-154 (349)
477 2vli_A Antibiotic resistance p 79.5 0.75 2.6E-05 43.4 2.2 23 72-94 6-28 (183)
478 3dl0_A Adenylate kinase; phosp 79.2 0.98 3.4E-05 44.1 3.0 22 73-94 2-23 (216)
479 2px0_A Flagellar biosynthesis 79.2 0.73 2.5E-05 48.2 2.1 22 72-93 106-127 (296)
480 3a4m_A L-seryl-tRNA(SEC) kinas 79.1 1 3.5E-05 45.7 3.2 23 72-94 5-27 (260)
481 1q3t_A Cytidylate kinase; nucl 78.7 1 3.5E-05 44.9 3.0 24 70-93 15-38 (236)
482 3ux8_A Excinuclease ABC, A sub 78.6 0.74 2.5E-05 53.7 2.1 20 73-92 350-369 (670)
483 2v4h_A NF-kappa-B essential mo 78.5 24 0.00083 30.9 11.1 15 577-591 89-103 (110)
484 1vma_A Cell division protein F 78.4 0.97 3.3E-05 47.5 2.8 25 70-94 103-127 (306)
485 1m7g_A Adenylylsulfate kinase; 78.3 1.1 3.7E-05 43.8 3.0 23 72-94 26-48 (211)
486 3qf7_A RAD50; ABC-ATPase, ATPa 78.2 1.1 3.8E-05 48.1 3.3 21 72-92 24-44 (365)
487 1x79_B RAB GTPase binding effe 78.0 36 0.0012 30.0 13.7 69 571-646 6-74 (112)
488 3vqt_A RF-3, peptide chain rel 77.7 1.8 6.3E-05 49.1 5.1 100 71-178 31-145 (548)
489 4eaq_A DTMP kinase, thymidylat 77.7 1.2 4E-05 44.6 3.0 23 72-94 27-49 (229)
490 1x79_B RAB GTPase binding effe 77.6 37 0.0013 30.0 12.9 63 562-624 36-98 (112)
491 1jbk_A CLPB protein; beta barr 77.2 1.2 4E-05 41.5 2.8 22 73-94 45-66 (195)
492 3nwj_A ATSK2; P loop, shikimat 77.1 0.84 2.9E-05 46.5 1.8 22 73-94 50-71 (250)
493 2w58_A DNAI, primosome compone 77.1 1.8 6E-05 41.6 4.1 23 72-94 55-77 (202)
494 3d3q_A TRNA delta(2)-isopenten 77.1 1.2 4E-05 47.6 3.0 23 72-94 8-30 (340)
495 1aky_A Adenylate kinase; ATP:A 77.0 1.3 4.3E-05 43.5 3.0 20 73-92 6-25 (220)
496 3upu_A ATP-dependent DNA helic 76.7 0.77 2.6E-05 50.8 1.5 64 25-92 3-66 (459)
497 1w5s_A Origin recognition comp 76.6 1.2 4.2E-05 47.7 3.0 25 68-92 49-73 (412)
498 2dr3_A UPF0273 protein PH0284; 76.4 1.2 4.2E-05 43.9 2.7 20 73-92 25-44 (247)
499 3g5u_A MCG1178, multidrug resi 76.3 1.1 3.7E-05 56.3 2.9 21 73-93 418-438 (1284)
500 3cve_A Homer protein homolog 1 76.3 23 0.00079 28.8 9.7 68 621-696 4-71 (72)
No 1
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=100.00 E-value=1.5e-90 Score=796.25 Aligned_cols=515 Identities=28% Similarity=0.491 Sum_probs=476.1
Q ss_pred CCCCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccc
Q 004698 38 GPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAP 117 (736)
Q Consensus 38 ~~~~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p 117 (736)
..+.|||||.++ +|.|.+|++|+++|..++.|+.+|+|+|++++|||||+|.|+|...||.+++++.+||+|||+|+.|
T Consensus 6 ~m~~pv~li~~~-~~~l~~~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~ 84 (592)
T 1f5n_A 6 HMTGPMCLIENT-NGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVP 84 (592)
T ss_dssp -CCSCEEEEEEE-TTEEEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEE
T ss_pred CCCCCeEEEEeC-CCcEEECHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecc
Confidence 356799999987 7999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCceEEEEeecCCCcccCC-CCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcC--
Q 004698 118 LKRTALDGTEYNLLLLDSEGIDAYDQ-TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG-- 194 (736)
Q Consensus 118 ~~~~~~~g~~~~v~llDteG~~~~~~-~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~-- 194 (736)
++. +.+..++|+||||+++... +..+|+++|+|+++|||++|||+.|.|++++++.|++++++++.++.++++
T Consensus 85 ~~~----~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~ 160 (592)
T 1f5n_A 85 HPK----KPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDE 160 (592)
T ss_dssp CSS----STTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC---
T ss_pred ccc----CCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHhhhhhcccCccc
Confidence 854 2346799999999988776 567899999999999999999999999999999999999999999887652
Q ss_pred ---CCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccC
Q 004698 195 ---GKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVR 271 (736)
Q Consensus 195 ---~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~ 271 (736)
+..+..+++.|||+|+||||||++++..+|+++|+++||+++|+..+|.++.+...|.+|.+|++|||+++||+|||
T Consensus 161 ~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~~g~~~t~~eyLe~~L~~~~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~ 240 (592)
T 1f5n_A 161 NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDR 240 (592)
T ss_dssp ----CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred ccccccchhhhhccCCceEEEEecccchhccCCCCCCHHHHHHHHHhhccCCChhhHhhhhHHHHHHHhCCCCcEEEeCC
Confidence 22234567889999999999999999889999999999999999999988889999999999999999999999999
Q ss_pred CCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHH
Q 004698 272 PLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSV 350 (736)
Q Consensus 272 P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~ 350 (736)
|+.+. .+++++.++.++|+|+|+++++.||++|++.++||++ +|.++||++|+.|++.||+|||+|.+|+++|+|.++
T Consensus 241 P~~~~-~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~ 319 (592)
T 1f5n_A 241 PVHRR-KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLAL 319 (592)
T ss_dssp CSCGG-GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHH
T ss_pred CCcHH-HHhhhccCChhhCCHHHHHHHHHHHHHHHccccceeecCCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHH
Confidence 99988 8999999999999999999999999999999999999 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CCCCh-HHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 351 EEAECRRAYDSATETYMSTFDRS--KPPEE-VALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKK 427 (736)
Q Consensus 351 ~e~~~~~a~~~A~~~Y~~~m~~~--~p~~e-~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~ 427 (736)
++.+|.+|++.|+++|.+.|... +|.+. ++|...|..+..+|+++|++.+|+ +..++|+++|...|.+.+++|++
T Consensus 320 a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~--d~~~~~~~~L~~~i~~~~~~~~~ 397 (592)
T 1f5n_A 320 AQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCK 397 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863 46655 899999999999999999999987 56789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHHHHHHHHHHHHhccc-CCCchhHHHHHHHH--HhhhhhHHH
Q 004698 428 NVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILD 500 (736)
Q Consensus 428 ~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~-~Gp~K~~~L~~fLq--~~~~~~il~ 500 (736)
.|+.+|..+|+++|+. |+++|+++.+..+|+|+.|.+.++.+..+|+..+ +||.++.+|++||+ ....++|++
T Consensus 398 ~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq 477 (592)
T 1f5n_A 398 QNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 477 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 5666667788888899999999999999999999 89999999999998 467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADD 561 (736)
Q Consensus 501 ~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~ 561 (736)
+|+.|+++ ++++.+.+++.++++.+...+.+.+...++.+++.+++|+++|.+++.+|+.
T Consensus 478 ~d~~l~~~-~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~ 537 (592)
T 1f5n_A 478 TDQTLTEK-EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537 (592)
T ss_dssp HCSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999766554
No 2
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=4.2e-87 Score=739.91 Aligned_cols=382 Identities=21% Similarity=0.307 Sum_probs=348.9
Q ss_pred CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHHh-------CC---------CC
Q 004698 37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLL-------GR---------SS 96 (736)
Q Consensus 37 ~~~~~pi~Lv~~d~~~~l~l~~eAl~-~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~-------~~---------~~ 96 (736)
+.+++|||||+++++|+|.||++|++ +|.. +++||+||||+|++|||||||||+|+ |. ..
T Consensus 29 ~~~~~pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~ 108 (457)
T 4ido_A 29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108 (457)
T ss_dssp --CCCEEEEEEECTTSCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCC
T ss_pred cCCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCC
Confidence 57899999999988899999999999 5654 47899999999999999999999776 22 57
Q ss_pred cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698 97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (736)
Q Consensus 97 gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (736)
||+||++++|||+|||||+.|+....|+|++++||||||||+++.+.+.++|++||+|++||||++|||++|+|++++|+
T Consensus 109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~ 188 (457)
T 4ido_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (457)
T ss_dssp SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred CceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHH
Confidence 99999999999999999999998888899999999999999999988888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHH
Q 004698 177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS 256 (736)
Q Consensus 177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~ 256 (736)
+|++|+++++.|.. ..+..|||+|+||||||+++++.+|..+|+++||+++|+..+|.. .+.|.+|++
T Consensus 189 ~L~~~tel~~~i~~---------~~~~~~Fp~f~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~~~g~~---~~~~~iR~~ 256 (457)
T 4ido_A 189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQH---EELQNVRKH 256 (457)
T ss_dssp HHHHHHHHHHHHSC---------CCSSCSEEEEEEEEETCCCTTTSCSBHHHHHHHHHHHHCCCTTSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---------hcccccCCceEEEEecCCccccccCCCCCHHHHHHHHhccCCCCC---HHHHHHHHH
Confidence 99999999998741 235678999999999999999888889999999999999887643 467889999
Q ss_pred HHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhcc--CCccccCCcccchhhHHHHHHHHHHH
Q 004698 257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER--TRPKQVGATVLTGPVLIGITESYLDA 334 (736)
Q Consensus 257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~--~~pK~~~g~~ltg~~l~~l~~~yv~a 334 (736)
|++|||+++||+||||+.++..+++++ .+.++|+|+|+++++.||++|++. ++||+++|.+|||++|+.|++.||+|
T Consensus 257 I~~~F~~~~Cf~lp~P~~~~~~~~~~~-~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~i~G~~vtg~~L~~lv~~Yv~a 335 (457)
T 4ido_A 257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI 335 (457)
T ss_dssp HHHHEEEEEEEECCCCCHHHHHCTTCC-CCGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEEcCCCchhhhhchhhh-cChhhCCHHHHHHHHHHHHHHhccccccccccCCEeecHHHHHHHHHHHHHH
Confidence 999999999999999998776666665 367899999999999999999974 56999999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CC-CChHHHHHHHHHHHHHHHHHhhhcc-cCChhhhH
Q 004698 335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KP-PEEVALGEAHEAAVQKALAVYNAGA-VGVGLARK 408 (736)
Q Consensus 335 in~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~----~p-~~e~~L~~~h~~~~~~Al~~F~~~s-~g~~~~~~ 408 (736)
||+|.+|+++|+|.++++++|.+|+++|+++|.+.|.+. +| .++++|++.|..|+++|+++|++.+ +|+.+..+
T Consensus 336 in~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~ 415 (457)
T 4ido_A 336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415 (457)
T ss_dssp HHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999999999999999999999999999999874 35 4679999999999999999999886 78888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004698 409 KYEGLLQKFFRKAFEDHKKNVYM 431 (736)
Q Consensus 409 ~~~~~L~~~i~~~~e~~~~~n~~ 431 (736)
+|+++|...|++++++|++.|+.
T Consensus 416 ~~~~~L~~~l~~~~~~~~~~Ne~ 438 (457)
T 4ido_A 416 RYLQQLESEIDELYIQYIKHNDS 438 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999965
No 3
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=2.4e-78 Score=674.78 Aligned_cols=383 Identities=21% Similarity=0.305 Sum_probs=346.0
Q ss_pred CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHHhCC----------------CC
Q 004698 37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLLGR----------------SS 96 (736)
Q Consensus 37 ~~~~~pi~Lv~~d~~~~l~l~~eAl~-~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~~~----------------~~ 96 (736)
...++|||||.++++|+|.||++|++ +|.. ++.||+||||+|++|+|||||||+|+|. .+
T Consensus 29 ~~~~~piqlv~~~~~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~ 108 (447)
T 3q5d_A 29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108 (447)
T ss_dssp CCCCCEEEEEEECTTSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCC
T ss_pred ccCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccc
Confidence 47889999999998899999999996 7765 5789999999999999999999999973 57
Q ss_pred cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698 97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID 176 (736)
Q Consensus 97 gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~ 176 (736)
||+|++|+++||+|||||+.|+....|+|+++.||||||||+++.+++.++|++||+|++||||++|||++|.|++++++
T Consensus 109 ~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~ 188 (447)
T 3q5d_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (447)
T ss_dssp SSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHH
T ss_pred eecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHH
Confidence 99999999999999999999998888899999999999999998888888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHH
Q 004698 177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS 256 (736)
Q Consensus 177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~ 256 (736)
+|++|+++++++.. .....+||+|+||||||++++..+|+.+||++||+++|+..++. ..+.|.+|++
T Consensus 189 ~L~~~~e~~~~~~~---------~~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~~~~---~~~~~~~r~~ 256 (447)
T 3q5d_A 189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQ---HEELQNVRKH 256 (447)
T ss_dssp HHHHHHHHHHHTSC---------CCSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSSTTC---SSSSCCHHHH
T ss_pred HHHHHHHHHHHHHH---------hhcccCCCceEEEEeeccccccccCCCCCHHHHHHHHHhhccCc---cHHHHHHHHH
Confidence 99999999987531 12346789999999999999888777789999999999877543 4456789999
Q ss_pred HHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhc--cCCccccCCcccchhhHHHHHHHHHHH
Q 004698 257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE--RTRPKQVGATVLTGPVLIGITESYLDA 334 (736)
Q Consensus 257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~--~~~pK~~~g~~ltg~~l~~l~~~yv~a 334 (736)
|++|||+++||+||||+.+......++ .++++|+|+|+++++.||++|+. .++||.++|.+|||++|+.|++.||++
T Consensus 257 i~~~F~~~~cf~lp~P~~~v~~~~~~~-~~l~~L~~~F~~~l~~l~~~i~~~~~~~~K~~~G~~vtg~~L~~~~~~yv~a 335 (447)
T 3q5d_A 257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI 335 (447)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHCTTCC-SBGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred HHHhCCCceEEeccCcccchhhhhhhh-cchhhccHHHHHHHHHHHHHhcCcccccccccCCEeecHHHHHHHHHHHHHH
Confidence 999999999999999997654444444 36789999999999999999996 467888999999999999999999999
Q ss_pred HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CCC-ChHHHHHHHHHHHHHHHHHhhhcc-cCChhhhH
Q 004698 335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KPP-EEVALGEAHEAAVQKALAVYNAGA-VGVGLARK 408 (736)
Q Consensus 335 in~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~----~p~-~e~~L~~~h~~~~~~Al~~F~~~s-~g~~~~~~ 408 (736)
||+|.+|+++|+|+++++.+|.+|+++|++.|.+.|++. .|+ ++++|.+.|..++++|++.|+..+ +|..++.+
T Consensus 336 in~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~ 415 (447)
T 3q5d_A 336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415 (447)
T ss_dssp HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHH
T ss_pred HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999999999873 353 679999999999999999999986 88889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 409 KYEGLLQKFFRKAFEDHKKNVYME 432 (736)
Q Consensus 409 ~~~~~L~~~i~~~~e~~~~~n~~~ 432 (736)
+|+++|+..|++.+++|+++|+..
T Consensus 416 ~~~~~L~~~l~~~~~~~~~~Ne~k 439 (447)
T 3q5d_A 416 RYLQQLESEIDELYIQYIKHNDSK 439 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999653
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.98 E-value=1.1e-07 Score=92.66 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 521 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600 (736)
Q Consensus 521 es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ 600 (736)
.++++++..++..++...+...+ .+..+++.+.-+..++ +.|+.++..++.+...|...+..++.++..|+.+
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~----le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQE----ARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677766655443333222 1222222222222222 3566666777777777777777777777777777
Q ss_pred HHHHHHH-------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 601 YDQVLTK-------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE 673 (736)
Q Consensus 601 yee~~~~-------~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e 673 (736)
|+..-++ .+++...+......|+.+++.+|..++++.++.+.+.+.+.|..+||+.++++. |+|+-....
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~-alLE~El~E-- 155 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN-AFLESELDE-- 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH--
Confidence 7666444 444444555555566669999999999999999999999999999999999988 999988874
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698 674 RTSKEMQQREDVLREEFSSTLAEKE 698 (736)
Q Consensus 674 ~~~e~~~~~~~~l~~e~~~~~~e~~ 698 (736)
-+.+....++|++++++++.|..
T Consensus 156 --Ke~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 156 --KESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp --HHHHHCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999997774
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.55 E-value=0.0004 Score=70.54 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=16.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 658 (736)
Q Consensus 617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~ 658 (736)
..+..++.++..++..+.....+...+..++..|+.....+.
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 187 (284)
T 1c1g_A 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444443333
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=98.52 E-value=4.1e-06 Score=74.49 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 577 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS-------RSTAAEARLAAAREQALSAQEEVEE 649 (736)
Q Consensus 577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~-------k~~~~E~~~~~~~~q~~~~~~E~~e 649 (736)
+.+...|...++.+..++.+|+.+|++.-..+......++.+++.|+. +++.+|..+++++|+.+.+.+.+.|
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 457788888899999999999999988776666666666666665554 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 650 WKRKYGVAVREAKAALEKAAIVQE 673 (736)
Q Consensus 650 ~~~ky~~~~~e~kalle~~~~~~e 673 (736)
+.+||++++++. |+||-....-+
T Consensus 82 ~E~k~n~aiErn-alLE~El~EKe 104 (111)
T 2v66_B 82 FEQRLNQAIERN-AFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999988 99998877554
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.47 E-value=0.0012 Score=67.02 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=10.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 622 LKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (736)
Q Consensus 622 L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~ 651 (736)
++.++..+...+.....+...+..++..+.
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 194 (284)
T 1c1g_A 165 VARKLVIIESDLERAEERAELSEGKCAELE 194 (284)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=98.41 E-value=6.5e-06 Score=75.07 Aligned_cols=98 Identities=9% Similarity=0.152 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698 508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (736)
Q Consensus 508 ~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l 587 (736)
..+.++..||.+++.+..+...+..++++++..+.+++.+|+.+++.. ..++++++.|.+.++.++.....|+.++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r----~~~E~di~~lrK~lD~~~l~r~dLE~~i 92 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR----EEAENTLQSFRQDVDNASLARLDLERKV 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999865 7889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004698 588 DSLKNEISDWKRKYDQVLTKQK 609 (736)
Q Consensus 588 e~lk~e~~e~~~~yee~~~~~~ 609 (736)
++|+.|+..+++.|++.+...+
T Consensus 93 esL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 93 ESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776653
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=98.25 E-value=4.6e-06 Score=71.52 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=81.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698 512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 591 (736)
Q Consensus 512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk 591 (736)
++..||.+++.+..+...+..++++++..+.+++.+|+++++.. ..++++++.|.+.++.++.....|+.++++++
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R----~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR----EEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999977 89999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004698 592 NEISDWKRKY 601 (736)
Q Consensus 592 ~e~~e~~~~y 601 (736)
.|+..+++.|
T Consensus 77 eEl~fLkk~h 86 (86)
T 3swk_A 77 EEIAFLKKLH 86 (86)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHhhcC
Confidence 9999998644
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.77 E-value=5.7e-05 Score=94.15 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=25.5
Q ss_pred CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHH
Q 004698 52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQL 91 (736)
Q Consensus 52 ~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l 91 (736)
|.|.|-+.|-..+..-..+=+ |-|.|..|+|||.-...+
T Consensus 151 Hi~aia~~ay~~m~~~~~~Q~-i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 151 HIYAIADTAYRSMLQDREDQS-ILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp CHHHHHHHHHHHHHHHTCCEE-EECCCSTTSSTTHHHHHH
T ss_pred cHhhhHHHHHHHHHhcCCCcE-EEEecCCCCCccHHHHHH
Confidence 445566666666655555554 558899999999544443
No 11
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.76 E-value=6.5e-05 Score=77.04 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=40.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
-|+++|..++|||+|+|.|+|.. .|..+ +++..|..+.+.|. ...+.|+||+|+.+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~-----------~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWD-----------KCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEET-----------TEEEEEEECCSCSSTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEEC-----------CcEEEEEECCCCCCCC
Confidence 48899999999999999999875 23222 23444556666653 2568899999996543
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.71 E-value=0.00011 Score=78.02 Aligned_cols=62 Identities=31% Similarity=0.466 Sum_probs=44.9
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc-C---CCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-S---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
+.|-++|+|+|..++|||+|+|+|+|.. |... + ++.....|+..+. ....++|+||+|+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~--~~i~s~~~~tT~~~~~~~~~~~----------~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK--VSIISPKAGTTRMRVLGVKNIP----------NEAQIIFLDTPGIYEP 72 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET----------TTEEEEEEECCCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC--ccccCCCCCceeeEEEEEEecC----------CCCeEEEEECcCCCcc
Confidence 4578999999999999999999999986 4322 1 2233344665542 1367999999998654
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.68 E-value=8.7e-05 Score=92.52 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=12.5
Q ss_pred ceEEEEeecCCCcccCC
Q 004698 127 EYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 127 ~~~v~llDteG~~~~~~ 143 (736)
...|=+||..||..++.
T Consensus 457 ~~~IgvLDi~GFE~f~~ 473 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFEI 473 (1184)
T ss_dssp CEEEEEEECCCCCCCSS
T ss_pred cceEEEeecCCcCCCCc
Confidence 46788889999876553
No 14
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.68 E-value=0.00016 Score=74.22 Aligned_cols=61 Identities=18% Similarity=0.385 Sum_probs=42.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
+..-|+|+|..++|||+|+|+|+|.. +|..+.. +..+..|+..|. | ..+.|+||+|+.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWG---------N--REIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEET---------T--EEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeC---------C--CEEEEEECcCCCCCC
Confidence 34568999999999999999999874 4544332 233344555552 2 568999999986543
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.68 E-value=0.0088 Score=58.22 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653 (736)
Q Consensus 574 ~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k 653 (736)
++..+.+..-+..++..++...+++..|++-....+....++.++|.. +|-++.++..+...++.|...||.|
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~-------~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQ-------AEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777777777766655554444444444444 4447888888888999999999999
Q ss_pred HHHHHHHHHH---HHHHHH-------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 004698 654 YGVAVREAKA---ALEKAA-------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723 (736)
Q Consensus 654 y~~~~~e~ka---lle~~~-------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~ 723 (736)
|+....++-. .|+..+ ..+...+-+.+...|.|+...+.+- .-+.++..||.++.-...=|-++|.
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~----~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI----MSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776322 222222 2222333344444444444444433 2257777777777777677777776
Q ss_pred hhh
Q 004698 724 VSF 726 (736)
Q Consensus 724 ~~~ 726 (736)
++.
T Consensus 155 EKe 157 (189)
T 2v71_A 155 EKE 157 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=0.00019 Score=72.70 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=38.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
+..-|+|+|+.++|||+|+|.|+|... |..+ .....+..+...|. | ..+.|+||+|+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWK---------E--TELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEET---------T--EEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeC---------C--ceEEEEECCCccCCC
Confidence 344589999999999999999999762 2222 12222333333332 2 468899999997544
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.60 E-value=0.0072 Score=62.26 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 004698 550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA 629 (736)
Q Consensus 550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~ 629 (736)
..+..+...+..+..++..++..+..+...+..++.+++..+..+..++.+-.. + ...++-+.+.++|+.++.+...+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v-~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-I-KSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-SSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444444433333321 1 13334456666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004698 630 EARLAAAREQALSAQEEVEEW 650 (736)
Q Consensus 630 E~~~~~~~~q~~~~~~E~~e~ 650 (736)
|.....+..+.+..+.++.+.
T Consensus 110 E~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655554333
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.46 E-value=0.00029 Score=69.90 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=42.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
+...|+|+|..++|||+|+|.|+|... +...+....+|..+-.+.... .....+.|+||+|++...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKR-LAFASKTPGRTQHINYFSVGP------AAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSS-SSCTTCCCCSCCCEEEEEESC------TTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc-ceeecCCCCcccceEEEEecC------CCCCcEEEEcCCCCCccc
Confidence 344688999999999999999998751 112222334566554433221 123568899999986543
No 19
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.44 E-value=0.00021 Score=75.57 Aligned_cols=58 Identities=28% Similarity=0.478 Sum_probs=41.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
....|+|+|..++|||+|+|+|+|.. |.. .+ ++.....|++.|. .+.+.|+||+|+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~--~~ivs~~~~tTr~~i~~i~~~~-----------~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK--VAPISPRPQTTRKRLRGILTEG-----------RRQIVFVDTPGLHK 67 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET-----------TEEEEEEECCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc--eeeecCCCCceeEEEEEEEEeC-----------CcEEEEecCccccc
Confidence 35679999999999999999999976 432 21 2223345665542 36789999999853
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.43 E-value=0.00017 Score=76.27 Aligned_cols=57 Identities=30% Similarity=0.560 Sum_probs=40.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+-.+|+|+|+.++|||+|+|.|+|.. +.. ++ ++.....|+..|. ...+.|+||+|+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~--~~i~s~~~~tTr~~~~gi~~~~-----------~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK--ISITSRKAQTTRHRIVGIHTEG-----------AYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS--EEECCCCSSCCSSCEEEEEEET-----------TEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCCCcceeeEEEEEEEC-----------CeeEEEEECcCCC
Confidence 45689999999999999999999975 432 11 1222335666552 2568899999974
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.41 E-value=0.0005 Score=68.87 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=40.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|.|+|..++|||+|+|+|++.. |.+.+ ....|+++......+ ..+.+.|+||+|...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~--~~~~~-~~~~t~~~~~~~~~~-------~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN--VDVQS-YSFTTKNLYVGHFDH-------KLNKYQIIDTPGLLD 88 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC--EEEEC-C-----CEEEEEEEE-------TTEEEEEEECTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--CccCC-CCCcceeeeeeeeec-------CCCeEEEEECCCCcC
Confidence 3458899999999999999999876 65433 234466665543221 126789999999854
No 22
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.40 E-value=0.00042 Score=66.69 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=39.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
.-|.|+|+.++|||+|+|+|++.. +........+|..+..+.. + ..+.++||+|++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~~~~~~-------~---~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSINFYLV-------N---SKYYFVDLPGYGYA 81 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCEEEEEE-------T---TTEEEEECCCBSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCeEEEEE-------C---CcEEEEECCCCccc
Confidence 358899999999999999999886 3333333345555544322 1 23779999998643
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.37 E-value=0.00023 Score=66.35 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=35.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.|+|+.++|||+|+|+|++.. |.......++|.....+...+ +| ..+.++||+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR--SAVVADVPGVTRDLKEGVVET-----DR--GRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC--C-----------CCEEEEEEE-----TT--EEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--eeeccCCCCceecceEEEEEe-----CC--ceEEEEECCCCCC
Confidence 47899999999999999999875 332222223343333332221 22 4688999999864
No 24
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.32 E-value=0.00033 Score=72.54 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=41.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
.+-.-|.|+|..++|||+|+|.|+|..- +.+++ ..++|........ +.....+.|+||+|++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~-~~~~t~~~~~~~~-------~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV-VSISP-FQSEGPRPVMVSR-------SRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCS-SSCCCSSCEEEEE-------EETTEEEEEEECCCSEET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeeEEEEE-------eeCCeEEEEEECCCCCCC
Confidence 4456789999999999999999998762 12222 2233332222111 112367999999998654
No 25
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=97.31 E-value=0.0017 Score=54.23 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 591 KNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 663 (736)
Q Consensus 591 k~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ka 663 (736)
-.-+.+++..|++.+..++++++ +|+.++++|+. .+......+.+++.|++|++|.++.+..+.-+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSE-------AANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35578999999999999999999 99999999888 88888889999999999999999999988744
No 26
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.31 E-value=0.00024 Score=73.78 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=38.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|+|+|..++|||+|+|.|++.. .|.... +....|.|+-.....+ ..+|..+.+.|+||+|+++
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLI---KEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEE---CC--CCEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEE---ecCCeEEEEEEEECCCccc
Confidence 48899999999999999999874 233211 0112344443333222 1245567899999999864
No 27
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.23 E-value=0.0005 Score=70.84 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.+-.-|+|+|..++|||+|+|.|+|....+ +++ ..++|.........+ + +..+.|+||+|+++..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~-~~~~t~~~~~~~~~~-----~--~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSP-FQAEGLRPVMVSRTM-----G--GFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCS-SCC-CCCCEEEEEEE-----T--TEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCCcceeeEEEEEEE-----C--CeeEEEEECCCCCCcc
Confidence 345568999999999999999999976222 222 222333222111111 1 2578999999987543
No 28
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00059 Score=64.00 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=36.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.. .++....+...+ ..++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~---------~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT--FRESYIPTVEDTYRQVI---------SCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC--CCSSCCCCSCEEEEEEE---------EETTEEEEEEEEECCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEE---------EECCEEEEEEEEECCCch
Confidence 37899999999999999999865 421 122221121111 113455789999999964
No 29
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.18 E-value=0.62 Score=54.62 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+-..|+|+|.+++|||+|+|.|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44459999999999999999999874
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.10 E-value=0.19 Score=47.34 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004698 529 LLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ 608 (736)
Q Consensus 529 ~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~ 608 (736)
.+..+|.++ ..+..++|++.-. +...++..+.+....+.++..+++.+.....++.++ +..-.+.
T Consensus 4 ~lE~qlkea---ae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsL-----------E~seeka 68 (155)
T 2efr_A 4 QLEDKVEEL---LSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSL-----------EAQAEKY 68 (155)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHH---HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------hhhhhHH
Confidence 344455544 3555567775554 555555555555555555555555555444444332 3333333
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 609 KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (736)
Q Consensus 609 ~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~ 647 (736)
....+.|+.+|..|+.++..+|.|...+.|.+..++.++
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i 107 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334668899999999988888888777777776666665
No 31
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.08 E-value=0.0012 Score=63.60 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=36.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~ 143 (736)
+..-|.|+|+.++|||+|+|.|++..---.+.++ ..+|..+..+.. ++ .+.++||+|++....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~-------~~---~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYII-------ND---ELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEE-------TT---TEEEEECCCBCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEEEEE-------CC---cEEEEECCCCCcccc
Confidence 3456889999999999999999987511112222 224554443321 12 378899999865443
No 32
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.00057 Score=64.80 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=40.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.+..=|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .+|..+.+.++||+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT--FSGSY---ITTIGVDFKIRTVE---INGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CC---TTTBSEEEEEEEEE---ETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--CCCcc---CCCceeEEEEEEEE---ECCEEEEEEEEcCCCchh
Confidence 345568999999999999999999875 43211 22334333222221 135567899999999643
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.05 E-value=0.28 Score=66.09 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698 617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (736)
Q Consensus 617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e 696 (736)
.+++.++.++..+++++...+.++...+.++.+++.+|+.++.|. ..|+.. .+..+.|+++...=+.++-.|
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek-~~L~~e-------~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET-EQIKTE-------SSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Confidence 444455555555555666666666666666667777777776655 333333 334444555555555555545
Q ss_pred HH
Q 004698 697 KE 698 (736)
Q Consensus 697 ~~ 698 (736)
..
T Consensus 2086 k~ 2087 (3245)
T 3vkg_A 2086 RG 2087 (3245)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.00056 Score=64.01 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=39.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |... ...|.|.-.....+.. ++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND--FAEN---KEPTIGAAFLTQRVTI---NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEEE---CCEEEEEEEEECCCCh
Confidence 38899999999999999999765 4321 1234444332222211 3456789999999954
No 35
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.04 E-value=0.00034 Score=75.64 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=22.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+-.|+|+|.+++|||+|+|.|.|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33489999999999999999999964
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.03 E-value=0.21 Score=47.48 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 523 IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 523 ~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye 602 (736)
..+++..+.++++++...+ +.-.+.-.-+++.-.++....+.++..+..+.+++..|...-+++.+++..+....+
T Consensus 4 ~neKi~~LekQL~E~n~kL----k~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLL----RTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp ------CTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666543331 112244444577777777777888888888888888888888888888888777665
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004698 603 QVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR 682 (736)
Q Consensus 603 e~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~ 682 (736)
+.-... ......+.+|+.| ..+++.|+...+.++..+..+-+ .++.+
T Consensus 80 qEr~~r----~q~se~~~elq~r--------------i~~L~~El~~~k~~~~k~~~e~r---------------~L~Ek 126 (168)
T 3o0z_A 80 AERRDR----GHDSEMIGDLQAR--------------ITSLQEEVKHLKHNLEKVEGERK---------------EAQDM 126 (168)
T ss_dssp HHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 443322 2222333344443 33333333333333333333333 34445
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 683 EDVLREEFSSTLAEKEEEMKEKATKIEHAEQ 713 (736)
Q Consensus 683 ~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~ 713 (736)
+..|+-+-.+.-.+..-++|-+|.+|++-+.
T Consensus 127 l~~lEKe~a~~eid~~~eLKalQ~~~eqE~~ 157 (168)
T 3o0z_A 127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQEVN 157 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777889999999998763
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.03 E-value=0.00059 Score=63.97 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=39.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|+.++|||+|+|.|++.. |... ...|.|.-.....+. .++..+.+.++||+|..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS--FDPN---INPTIGASFMTKTVQ---YQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCceeEEEEEEEEE---ECCeEEEEEEEcCCCch
Confidence 348999999999999999999875 3211 122444433322221 13455789999999974
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.01 E-value=0.00051 Score=65.09 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=40.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|+.++|||+|+|.|++.. |... ...|.|+-.....+. .+|..+.+.++||+|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC--CCC-------CCSEEEEEEEEE---ETTEEEEEEEEECCCCG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 3458999999999999999999765 4321 123445443332222 24556789999999953
No 39
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00074 Score=64.15 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+..-|.|+|+.++|||+|+|.|++.. |.... ...|.|+-.....+. .+|..+.+.++||+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~--~~~t~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA--FLAGT--FISTVGIDFRNKVLD---VDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCCCC--CCCCCSCEEEEEEEE---ETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--CCCCC--cCCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 34458999999999999999999875 43221 123444433332221 24566789999999954
No 40
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.98 E-value=0.00086 Score=63.24 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=34.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|.|+|+.++|||+|+|+|.+.. |..... |.|.=.....+. .+|..+.+.++||+|...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~--~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ--ERDLHE----QLGEDVYERTLT---VDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------CC----CSSSSEEEEEEE---ETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC--CccccC----ccccceeEEEEE---ECCEEEEEEEEecCCCCc
Confidence 3458999999999999999999875 432211 122111111111 135567899999999753
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.96 E-value=0.0073 Score=55.63 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 605 LTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (736)
Q Consensus 605 ~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal 664 (736)
+++++++++ +|+.++++|+. .+......+.+++.|++|++|.++.+..+.-++
T Consensus 2 a~knr~eaE~~y~~K~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 2 ANRSRTEAESWYQTKYEELQQ-------TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777 99999998888 778888889999999999999999888877444
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.95 E-value=0.00089 Score=62.35 Aligned_cols=58 Identities=28% Similarity=0.298 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.. .. +.|.|.-... .+ ..++..+.+.|+||+|..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCS--CC-CTTCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--cCC--CC-CCCcceEEEE-EE---EECCEEEEEEEEECCCcc
Confidence 48899999999999999999765 421 11 1233322211 11 123556789999999953
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.95 E-value=0.00072 Score=63.47 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |.... ..|.|.-.....+. .+|..+.+.++||+|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK--FNDKH---ITTLGASFLTKKLN---IGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC--CCSSC---CCCCSCEEEEEEEE---SSSCEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC--CCcCC---CCccceEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 458999999999999999999765 32211 12333222211111 24566889999999964
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.95 E-value=0.00096 Score=63.76 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.. ...+.+ +..... .+ ..+|..+.+.|+||+|..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~--~~~--~~~~t~-~~~~~~-~~---~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH--FVD--EYDPTI-EDSYRK-QV---VIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS--CCC--CCCTTC-CEEEEE-EE---EETTEEEEEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--CCCCCc-hheEEE-EE---EECCcEEEEEEEECCCcH
Confidence 48899999999999999999765 321 111222 221111 11 123556778899999964
No 45
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.95 E-value=0.0008 Score=69.35 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=39.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.|+++|..++|||+|+|.|.|.. +.+++.. ..|.........+ +| ..+.|+||+|+.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~p-g~Tv~~~~~~~~~-----~~--~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN--QRVGNWP-GVTVEKKTGEFLL-----GE--HLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS--EEEEECT-TSSSEEEEEEEEE-----TT--EEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCccCCC-CceEEEEEEEEEE-----CC--eEEEEEeCCCccccc
Confidence 48899999999999999999986 5555432 2232222221111 12 468899999986543
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.95 E-value=0.00061 Score=64.46 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=39.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|.|++.. |... ...|.|+-.+...+. .++..+.+.++||+|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeEEEEEEEE---ECCeEEEEEEEECCCcH
Confidence 348899999999999999999765 4321 123444433322221 13555789999999954
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.94 E-value=0.001 Score=61.90 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=37.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.. ...+ |.|.... ..+ ..++..+.+.|+||+|..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~--~~~--~~~~-~~~~~~~-~~~---~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT--FIE--KYDP-TIEDFYR-KEI---EVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC--CCS--CCCT-TCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--Ccc--cCCC-CcceeEE-EEE---EECCEEEEEEEEECCCch
Confidence 48999999999999999999765 321 1122 3332221 111 123556778999999953
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.94 E-value=0.0005 Score=64.31 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=37.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .++..+.+.++||+|..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI--FTKDY---KKTIGVDFLERQIQ---VNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC--CCCCS---SCCCSSSEEEEEEE---ETTEEEEEEEECCTTGG
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCceEEEEEEEEEE---ECCEEEEEEEEcCCCcH
Confidence 47899999999999999999764 43211 22333211111111 13445789999999954
No 49
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.93 E-value=0.0012 Score=64.39 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=42.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.+..-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ---YKATIGADFLTKEVM---VDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---SSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence 455679999999999999999999875 4321 123444433332222 235568899999999643
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.93 E-value=0.001 Score=62.91 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=39.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+..-|.|+|..++|||+|+|.|++.. |.- . .+.|.|.-... .+ ..+|..+.+.|+||+|..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~--~-~~~t~~~~~~~-~~---~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVS--D-YDPTIEDSYTK-IC---SVDGIPARLDILDTAGQE 68 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCS--S-CCTTCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--Ccc--c-cCCCcCceEEE-EE---EECCEEEEEEEEECCCch
Confidence 34458999999999999999999874 321 1 12233333221 11 123555788999999964
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.93 E-value=0.00082 Score=62.86 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=38.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |.. ....|.|+-.....+.. ++..+.+.++||+|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ--FHE---FQESTIGAAFLTQTVCL---DDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCT---TCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcH
Confidence 348899999999999999999754 321 11234443332222211 3446789999999964
No 52
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.92 E-value=0.0007 Score=65.27 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=34.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+|+|+.++|||+|+|+|.|....|. +....|.|+-+....+.....++..+.+.++||.|..
T Consensus 5 v~ivG~~gvGKStLl~~l~~~~~~~~---~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKTKKSDL---GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccC---CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 78999999999999999998532342 1123466665443332211123456788999999964
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.92 E-value=0.00075 Score=65.06 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
=|+|+|+.++|||+|+|.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999999875
No 54
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.92 E-value=0.00097 Score=68.75 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=40.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.-|+++|..++|||+|+|+|.|.. |.+++.. ..|......... ...+.+.|+||+|..+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~p-g~tv~~~~~~~~-------~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK--QYVANWP-GVTVEKKEGVFT-------YKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEEEE-------ETTEEEEEEECCCCSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC--CcccCCC-CceEEEEEEEEE-------ECCeEEEEEECCCcCccC
Confidence 458999999999999999999876 5555432 233332222111 123678999999986543
No 55
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.90 E-value=0.0016 Score=67.60 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=39.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
.|+++|..++|||+|+|.|.|.. |.+++.. ..|....... +. .+| ..+.|+||+|+.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~-g~t~~~~~~~--~~---~~~--~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR--QRVGNWA-GVTVERKEGQ--FS---TTD--HQVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC--EEEEECT-TSSSEEEEEE--EE---CSS--CEEEEEECCCCSCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeeEEEEEEE--EE---eCC--CceEEEECcCCCccc
Confidence 58899999999999999999986 6665432 1232221111 11 012 457889999987654
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.90 E-value=0.0061 Score=56.31 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 604 VLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (736)
Q Consensus 604 ~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal 664 (736)
.++.++++++ +|+.++++|+. .+......+..++.|++|++|.++.+..+.-++
T Consensus 3 ia~knr~eaE~~y~~K~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 3 TAEKNRKDAEEWFFTKTEELNR-------EVATNSELVQSGKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777 99999998888 777888889999999999999999988876443
No 57
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.00097 Score=64.46 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=39.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+.. ++..+.+.|+||+|..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE--FSHD---SRTTIGVEFSTRTVML---GTAAVKAQIWDTAGLE 85 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC--CCSS---CCCCSSEEEEEEEEEE---TTEEEEEEEEEESCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEEE---CCEEEEEEEEeCCCch
Confidence 48999999999999999999865 4321 1234444332222211 3455789999999974
No 58
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.88 E-value=0.0011 Score=68.66 Aligned_cols=61 Identities=23% Similarity=0.237 Sum_probs=40.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
+..|+++|+.++|||+|+|.|.|.. |.+++.. ..|....... +.. +| ..+.++||+|+.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~-~~t~~~~~~~--~~~---~~--~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWP-GVTVEKKEGI--MEY---RE--KEFLVVDLPGIYSL 63 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECT-TSSCEEEEEE--EEE---TT--EEEEEEECCCCSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeEEEeeEEE--EEE---CC--ceEEEEeCCCcccc
Confidence 4568999999999999999999986 5555431 1233222221 111 12 45889999998654
No 59
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.87 E-value=0.0012 Score=61.15 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|+.++|||+|+|.|++.. |.- ...+ |.|.... ..+ ..++..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~--~~~--~~~~-~~~~~~~-~~~---~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH--FVD--ECDP-TIEDSYR-KQV---VIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEE-EEE---EETTEEEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--Ccc--ccCC-ccceEEE-EEE---EECCEEEEEEEEECCCch
Confidence 37899999999999999999764 321 1112 2222111 111 123556788999999954
No 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.86 E-value=0.00076 Score=63.79 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=38.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..-|.|+|..++|||+|+|+|++.. |.. ..+.|.|+-.....+. .++..+.+.|+||+|..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCTTSCCCCEEEEEEE---ETTEEEEEEEEECTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCCh
Confidence 4458999999999999999999765 321 1122333221111111 13456789999999953
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.85 E-value=0.00074 Score=63.27 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=35.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+ ..+|..+.+.++||+|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTV---DINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC--CCC----------CCEEEEEE---ESSSCEEEEEEECCTTGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEE---EECCEEEEEEEEeCCCCh
Confidence 48999999999999999999765 42211 1122211110111 123556789999999964
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.83 E-value=0.0013 Score=61.26 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=38.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |.-. ...|.|.-.. ..+ ..++..+.+.++||+|..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI--FVEK---YDPTIEDSYR-KQV---EVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC--CCCS---CCCCSEEEEE-EEE---ESSSCEEEEEEEEECSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCCccceEE-EEE---EECCEEEEEEEEECCChH
Confidence 38899999999999999999754 3211 1224443322 111 124566889999999964
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.82 E-value=0.0013 Score=64.15 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=40.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTIY---RNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC--CCSCC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence 4458999999999999999999876 43211 22334332222221 13556789999999964
No 64
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.82 E-value=0.00085 Score=63.00 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=34.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.=|.|+|+.++|||+|+|+|.+.. |...+. .|.+.-.....+. .+|..+.+.++||+|...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~--~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ--GDHAHE---MENSEDTYERRIM---VDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-----------------CEEEEEEE---ETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc--Cccccc---CCCcCCeeeEEEE---ECCeEEEEEEEECCCccc
Confidence 348899999999999999999765 221111 1111111111111 245568899999999753
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.80 E-value=0.0021 Score=62.46 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|+|.|++.. |.. .. +.|.|.-.. ..+ ..+|..+.+.|+||+|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYR-KKV---VLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCT--TC-CTTCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC--CCC--CC-CCccceEEE-EEE---EECCEEEEEEEEcCCChh
Confidence 345568999999999999999999765 421 11 223332221 111 123556789999999954
No 66
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.79 E-value=0.00062 Score=71.69 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=23.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
++..|+|+|.+++|||+|+|.|+|..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 45579999999999999999999975
No 67
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.0014 Score=63.45 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|..++|||+|+|.|++.. |.. .++....+...+ ..++..+.+.|+||+|..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~---------~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT--FRDTYIPTIEDTYRQVI---------SCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC--CCCTTSCCCCEEEEEEE---------EETTEEEEEEEEECCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC--CCCcccCccccceeEEE---------EECCEEEEEEEEeCCChH
Confidence 348999999999999999999764 321 122211111111 123556789999999954
No 68
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.75 E-value=0.0014 Score=62.51 Aligned_cols=58 Identities=29% Similarity=0.489 Sum_probs=35.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|+|+|+.++|||+|+|.|.+.. |...+...+.|.+..... + ..+| ..+.++||+|+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~--~~~~~~~~~~t~~~~~~~--~---~~~~--~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE--AAIVTDIAGTTRDVLREH--I---HIDG--MPLHIIDTAGLR 63 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC--CSCCCSSTTCCCSCEEEE--E---EETT--EEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cceeeCCCCceeceeeEE--E---EECC--eEEEEEECCCcc
Confidence 48899999999999999999875 321111112232221110 1 0123 357889999974
No 69
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.75 E-value=0.0016 Score=61.95 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=39.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
..-|.|+|+.++|||+|+|.|++.. |.. .. +.|.|.-... .+ ..+|..+.+.++||+|....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVD--SY-DPTIENTFTK-LI---TVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCS--CC-CTTCCEEEEE-EE---EETTEEEEEEEEECCCCCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCC--CC-CCCccccEEE-EE---EECCEEEEEEEEeCCCchhh
Confidence 3458899999999999999999654 321 11 1233332211 11 12455678899999997543
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.74 E-value=0.001 Score=65.24 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=38.9
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTVD---INGKKVKLQLWDTAGQER 81 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC--CCCSS---SCCCSCCEEEEEEE---ETTEEEEEEEECCTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCccc---CCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence 3458999999999999999999765 43211 11222211111111 135557899999999643
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.74 E-value=0.0013 Score=64.84 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=38.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.=|+|+|..++|||+|+|+|++.. |.. .++....+..+... ..+|..+.+.|+||+|...
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGR--FEKNYNATVGAVNHPVTFL-------DDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCS--TTCEEETTTTEEEEEEEEE-------BTTSCEEEEEEEEECSGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCccceeeEEEEEE-------eCCCcEEEEEEEecCCchh
Confidence 348899999999999999999765 321 22222222222221 1234447899999999653
No 72
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.74 E-value=0.0014 Score=68.58 Aligned_cols=57 Identities=28% Similarity=0.320 Sum_probs=33.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
-|+|+|.+++|||+|+|.|+|.. .+.+++.. .+|+..- |. .. +. .+.|+||+|+...
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~-g~T~~~~-~~---~~----~~--~~~l~DtpG~~~~ 178 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN-IAKTGDRP-GITTSQQ-WV---KV----GK--ELELLDTPGILWP 178 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC-CC-------------C-CE---EE----TT--TEEEEECCCCCCS
T ss_pred eEEEEecCCCchHHHHHHHhcCc-eeecCCCC-CeeeeeE-EE---Ee----CC--CEEEEECcCcCCC
Confidence 48899999999999999999875 23444331 2444431 21 11 11 3788999999654
No 73
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0015 Score=62.79 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=39.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT--FDPE---LAATIGVDFKVKTIS---VDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCcc---CCCccceEEEEEEEE---ECCeEEEEEEEeCCCch
Confidence 458899999999999999999765 4321 122444433222221 13456789999999964
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.71 E-value=0.0014 Score=62.04 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+.. .++..+.+.++||+|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK--YSQQY---KATIGADFLTKEVTV--DGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC--CCTTC------CCCSCEEEEECC--SSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc--CCccc---CCccceEEEEEEEEE--cCCcEEEEEEEECCCCh
Confidence 345568999999999999999999865 32211 123332222111111 12445789999999954
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.71 E-value=0.0012 Score=62.99 Aligned_cols=61 Identities=28% Similarity=0.370 Sum_probs=39.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..-|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK--FKDDS---NHTIGVEFGSKIIN---VGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCSEEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 4458899999999999999999765 43221 22334322222221 13455789999999954
No 76
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.70 E-value=0.0015 Score=62.85 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=38.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTVY---RHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCCSC---CCCCCCEEEEEEEE---ETTEEEEEEEEECCSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCc---CCceeEEEEEEEEE---ECCeEEEEEEEeCCCcHH
Confidence 48999999999999999999865 43211 12333322211111 134567899999999643
No 77
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.70 E-value=0.0011 Score=72.78 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=35.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeecccccccc------C------CC-CceEEEEeecCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTA------L------DG-TEYNLLLLDSEG 137 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~------~------~g-~~~~v~llDteG 137 (736)
|+|+|.+++|||+|+|.|.|.. +.+++ ++...+.|+..+..+.+... | ++ ..+.+.|+||+|
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 7899999999999999999876 33332 23334678865542221100 0 12 136799999999
Q ss_pred Cc
Q 004698 138 ID 139 (736)
Q Consensus 138 ~~ 139 (736)
+.
T Consensus 81 ~~ 82 (397)
T 1wxq_A 81 LV 82 (397)
T ss_dssp --
T ss_pred cc
Confidence 84
No 78
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.69 E-value=0.0012 Score=64.68 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=39.3
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT--YTNDY---ISTIGVDFKIKTVE---LDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCTTC---CCSSCCCEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEeCCChHH
Confidence 3458999999999999999999865 43211 12323211111111 135567899999999653
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.69 E-value=0.0021 Score=61.13 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=37.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|+.++|||+|+|.|++.. |.. .. +.|.|.-... .+ ..++..+.+.|+||+|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCC--SC-CTTCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCC--cC-CCccceEEEE-EE---EECCEEEEEEEEECCCCc
Confidence 348899999999999999999765 421 11 1233322211 11 123556789999999954
No 80
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.0015 Score=63.37 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|+|+|+.++|||+|+|.|++.. |... ...|.|+-.....+.. ++..+.+.|+||+|..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH--FDHN---ISPTIGASFMTKTVPC---GNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC--CCTT---CCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC--CCCC---cCCCcceeEEEEEEEe---CCEEEEEEEEcCCCch
Confidence 458999999999999999999875 4211 1224443332222211 3456789999999954
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.69 E-value=0.0012 Score=63.73 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=38.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR--FPDRT---EATIGVDFRERAVD---IDGERIKIQLWDTAGQE 80 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS--CCSSC---CCCCSCCEEEEEEE---ETTEEEEEEEEECCCSH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 48999999999999999999764 32211 22333322222121 13556789999999964
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.67 E-value=0.0019 Score=62.14 Aligned_cols=57 Identities=28% Similarity=0.330 Sum_probs=35.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|.|++.. |.- ...+ |.|.-... .+ ..++..+.+.|+||+|..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH--FVD--EYDP-TIEDSYRK-QV---VIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEECcCCCCHHHHHHHHHcCC--Ccc--ccCC-ccceEEEE-EE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999764 321 1112 22322211 11 123556789999999964
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.66 E-value=0.0013 Score=62.54 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ--FVEFQ---ESTIGAAFFSQTLA---VNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC--CTTTS---CCCSCCSEEEEEEE---ETTEEEEEEEEECCCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC--CCCcC---CCCceeEEEEEEEE---ECCEEEEEEEEeCCCCh
Confidence 3458899999999999999999765 32211 12333211111111 12445789999999954
No 84
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.0013 Score=63.80 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=35.6
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT--FCEAC---KSTVGVDFKIKTVE---LRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-------------CCTTEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCcCC---CCccceeEEEEEEE---ECCeEEEEEEEeCCCcH
Confidence 7899999999999999999875 43211 22334333222221 13556789999999953
No 85
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.66 E-value=0.00066 Score=73.30 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=23.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+..+|+|+|++++|||+|+|.|+|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999999986
No 86
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0044 Score=66.86 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=42.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.+...|+|+|+.++|||+|+|.|.|.. +.+++. ...|.++-+...+. ....+.++||+|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~-~~~t~~~~~~~~~~-------~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASY-PFTTRGINVGQFED-------GYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECC-TTCSSCEEEEEEEE-------TTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCC-CCeeeceeEEEEEe-------cCceEEEEeCCCccc
Confidence 355689999999999999999999876 444332 23455554332221 135789999999854
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.64 E-value=0.0018 Score=61.17 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=36.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCC---CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
..|+|+|+.++|||+|+|+|.|.. |.+++.. .....|...| ++ ..+.++||+|....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~---------~~--~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEY---------NG--EKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEE---------TT--EEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEE---------CC--cEEEEEECCCcccC
Confidence 468999999999999999999865 4333210 0111222211 12 56889999997543
No 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.64 E-value=0.0022 Score=62.63 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=38.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|.|+|..++|||+|+|+|++.. |.. .. ..|.|.-.... + ..++..+.+.|+||+|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~~-~---~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE--FSE--GY-DPTVENTYSKI-V---TLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCS--CC-CCCSEEEEEEE-E---C----CEEEEEEEECCCCT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC--CCC--CC-CCccceEEEEE-E---EECCEEEEEEEEECCCccc
Confidence 3458899999999999999999875 432 11 23444333211 1 1235568899999999653
No 89
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0014 Score=71.29 Aligned_cols=57 Identities=30% Similarity=0.408 Sum_probs=41.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-++-|+|+|.+.+|||+|+|.|.|... .+++ ++..+..|+.-|. | ..+.|+||+|+-
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~---------~--~~i~l~D~pGl~ 130 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYK---------G--AKIQMLDLPGII 130 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEET---------T--EEEEEEECGGGC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeC---------C--cEEEEEeCCCcc
Confidence 356799999999999999999998652 2222 2233356776552 2 568999999983
No 90
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.63 E-value=0.008 Score=57.58 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=44.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccccc-----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+..=|.|+|+.++|||+|+|.|.|....-..+ .+....|.|+-.+...+. ..++..+.+.++||+|..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG--EVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC--CSSSCEEEEEEEECCSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc--cccCCceEEEEEeCCChH
Confidence 34458899999999999999988753211000 011234777766654331 234667889999999964
No 91
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.63 E-value=0.0016 Score=62.84 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=40.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC--CCSCC---CCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCcccceEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 345569999999999999999999765 43221 12333222222221 13556789999999953
No 92
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.62 E-value=0.0017 Score=62.19 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=35.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|++.. |..+... ..|..+..+.. + .+.++||+|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~-~~t~~~~~~~~--------~---~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRP-GVTRKIIEIEW--------K---NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC--CSSSSST-TCTTSCEEEEE--------T---TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CccCCCC-CccceeEEEec--------C---CEEEEECCCccc
Confidence 37899999999999999999876 6554332 12222211110 1 367899999753
No 93
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.62 E-value=0.0011 Score=71.63 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..-|+|+|.+++|||+|+|.|+|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999999975
No 94
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.61 E-value=0.0027 Score=60.71 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=38.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEee-cccccc------ccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW-SAPLKR------TALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w-~~p~~~------~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|+.++|||+|+|.|++.. |... ...|.|+-.. ...+.. ....+..+.+.|+||+|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK--FNSK---FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCcC---cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 3458899999999999999999765 3221 1223333221 100100 0011225789999999963
No 95
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0015 Score=64.35 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=40.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|+|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTVE---INGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 348899999999999999999765 43322 23444433222221 24556789999999953
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.59 E-value=0.0021 Score=62.51 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=40.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
....|+|+|+.++|||+|+|.|.|.. |.... ..|.|+-.....+. .+|..+.+.++||.|..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC--CCCSC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEECCCCc
Confidence 34579999999999999999999875 43211 22434333222221 14556777789999964
No 97
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.57 E-value=0.04 Score=67.76 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=22.9
Q ss_pred eeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHH
Q 004698 54 FRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQL 91 (736)
Q Consensus 54 l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l 91 (736)
|.|-+.|-..+..-..+=+ |-|.|..|+|||.-...+
T Consensus 140 faiA~~Ay~~m~~~~~~Qs-IiisGESGAGKTe~~K~i 176 (1080)
T 2dfs_A 140 FAVAEEAYKQMARDERNQS-IIVSGESGAGKTVSAKYA 176 (1080)
T ss_dssp HHHHHHHHHHHHHHTCCEE-EEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcE-EEEcCCCCCCccchHHHH
Confidence 4455555555554444444 557899999999644443
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.56 E-value=0.0019 Score=63.04 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=39.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..-|+|+|+.++|||+|+|.|.|.. |.... ..|.|+-.....+. .+|..+.+.+.||.|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC--CCC------CCCSCEEEEEEEE---ETTEEEEEEEEECSSGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCch
Confidence 4568999999999999999999875 43211 12333222211111 14556778899999964
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.52 E-value=0.7 Score=62.38 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=21.1
Q ss_pred hccCCCEEEEEeeCCCCCChhHHHHHHhCCCCc
Q 004698 65 QLVKEPIGVVSVCGRARQGKSFILNQLLGRSSG 97 (736)
Q Consensus 65 ~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~g 97 (736)
...+.|| -++||+|||||.++...+....+
T Consensus 1301 l~~~~pv---LL~GptGtGKT~li~~~L~~l~~ 1330 (3245)
T 3vkg_A 1301 LSEHRPL---ILCGPPGSGKTMTLTSTLRAFPD 1330 (3245)
T ss_dssp HHTTCCC---EEESSTTSSHHHHHHHHGGGCTT
T ss_pred HHCCCcE---EEECCCCCCHHHHHHHHHHhCCC
Confidence 3446775 46899999999888776654333
No 100
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.52 E-value=0.0023 Score=59.77 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=32.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|.|.. +.... .|.|.-... .+ ..++..+.+.++||+|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~--~~~~~----~~~~~~~~~-~~---~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE--DGPEA----EAAGHTYDR-SI---VVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC----------------CEEEE-EE---EETTEEEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHcCcc--ccCCC----CccccceEE-EE---EECCEEEEEEEEECCCCcc
Confidence 37899999999999999999765 22111 122221110 01 1245668899999999653
No 101
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.52 E-value=0.003 Score=59.19 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=37.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |. .. ..|.|+-.....+ + .+.+.++||+|..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE--VV---TT-IPTIGFNVETVTY-----K--NLKFQVWDLGGLT 62 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CC---CC-CCCSSEEEEEEEE-----T--TEEEEEEEECCCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC---Cc-CCcCccceEEEEE-----C--CEEEEEEECCCCh
Confidence 348899999999999999998765 42 11 2244543322211 1 3678999999964
No 102
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.51 E-value=0.001 Score=64.78 Aligned_cols=62 Identities=32% Similarity=0.432 Sum_probs=18.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCC--ceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGT--EYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~--~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|.|++....|.- ....|.|+-.....+.. +|. .+.+.|+||+|..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~---~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLK---DYAMTSGVEVVVAPVTI---PDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEC-------------------------------------CEEEEC---TTSSEEEEEEEEETTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccC---CCCCccceEEEEEEEEE---CCcccEEEEEEEECCCcH
Confidence 45899999999999999999987322431 12345553333222221 344 6789999999964
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.0018 Score=63.05 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=36.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++..+.+.|+||+|..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE--FREN---ISATLGVDFQMKTLI---VDGERTVLQLWDTAGQE 88 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC--CC-------------CEEEEEE---ETTEEEEEEEEECTTCT
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC--CCcc---CCCCccceeEEEEEE---ECCEEEEEEEEECCCCc
Confidence 458999999999999999999765 4211 112334322222221 13556789999999954
No 104
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.49 E-value=0.0034 Score=67.38 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=25.8
Q ss_pred HHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 60 Al~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+++-+...-.+-.+|+|+|+.++|||||+|.|.|
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3343333235667899999999999999999985
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.48 E-value=0.0034 Score=59.65 Aligned_cols=59 Identities=29% Similarity=0.284 Sum_probs=37.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|.+.. |.- ...+ |.|... ...+ ..+|..+.+.++||+|...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~-~~~~---~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIP-TVFDNY-SANV---MVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--CCS--SCCC-CSCCEE-EEEE---EETTEEEEEEEECCCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC--CcCC-ccccee-EEEE---EECCEEEEEEEEECCCCHh
Confidence 48899999999999999999654 321 1112 222111 1111 1245667888999999753
No 106
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.47 E-value=0.0052 Score=58.50 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|+|+|++.. |... . ..|.|.-.... + ..++..+.+-++||+|..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI--FVDD--Y-DPTIEDSYLKH-T---EIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSC--C-CTTCCEEEEEE-E---EETTEEEEEEEEECCSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCCC--C-CCCccceeEEE-E---EeCCcEEEEEEEECCCch
Confidence 455568999999999999999999764 3221 1 12333222111 1 123555677789999954
No 107
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.47 E-value=0.0036 Score=60.78 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=36.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.-|.|+|..++|||+|+|.|++.. |.. ...+ |.|.-.. ..+ ..+|..+.+.|+||+|...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG--YPT--EYIP-TAFDNFS-AVV---SVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC------------C-CSSEEEE-EEE---EETTEEEEEEEEECCCSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC--CCCC-cccceeE-EEE---EECCEEEEEEEEECCCCHH
Confidence 448899999999999999999875 432 1112 3332221 111 1245567788999999754
No 108
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.46 E-value=0.0016 Score=63.74 Aligned_cols=59 Identities=29% Similarity=0.400 Sum_probs=33.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK--FKQDS---NHTIGVEFGSRVVN---VGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-----------------CCEEEEEEE---ETTEEEEEEEECCTTHH
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCccC---CCcccceeEEEEEE---ECCeeeEEEEEcCCCcH
Confidence 48899999999999999999865 43221 12333211111111 13455789999999964
No 109
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.46 E-value=0.0038 Score=69.06 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=34.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
..-|+|+|..++|||+|+|+|++.. |...+.....|..... .++.. .+ ...+.|+||+|+++..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~--~~~~~~~~gtT~d~~~--~~~~~---~~-~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQN--VSIVSDYAGTTTDPVY--KSMEL---HP-IGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC---------------CCCCE--EEEEE---TT-TEEEEEEECSSTTCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCC--CCccCCCCCeeeeeEE--EEEEE---CC-CCeEEEEECcCCCccc
Confidence 3458999999999999999999876 4322221222221111 11111 11 1368899999997554
No 110
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.006 Score=59.06 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=38.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|..++|||+|+|+|++.. |... ...|.|.-.. ..+ ..++..+.+.|+||+|..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~ 87 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR--FIWE---YDPTLESTYR-HQA---TIDDEVVSMEILDTAGQE 87 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCSC---CCTTCCEEEE-EEE---EETTEEEEEEEEECCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc---cCCCCCceEE-EEE---EECCEEEEEEEEECCCCC
Confidence 348899999999999999999865 4221 1223333221 111 124556789999999975
No 111
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.46 E-value=0.0059 Score=69.90 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
....|+|+|.+++|||+|+|.|+|..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999986
No 112
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.46 E-value=0.0017 Score=67.57 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..-|+|+|.+++|||+|+|.|+|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 34479999999999999999999876
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.43 E-value=0.0082 Score=58.63 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-..|+|+|+.++|||+|+|.|+|..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999875
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0038 Score=59.76 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=37.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
..|+|+|+.++|||+|+|.|.|.. |.++... ..|....... +. .+ .+.+.++||+|....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~-~~t~~~~~~~--~~---~~--~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWP-GVTVEKKEGE--FE---YN--GEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEE--EE---ET--TEEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--ccccCCC-CeeccceEEE--EE---eC--CcEEEEEECCCcCcc
Confidence 568999999999999999999865 4443221 1121111111 10 01 267889999997543
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.40 E-value=0.0033 Score=59.42 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=37.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
+...|.|+|+.++|||+|+|+|++.. |..... ...|..+-.+... .+| ..+.++||+|....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~-----~~~--~~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEA-GGITQHIGAYQVT-----VND--KKITFLDTPGHEAF 68 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSC-CSSSTTCCCCEEE-----ETT--EEEEESCCCSSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc--cccCCC-CceeEeeeEEEEE-----eCC--ceEEEEECCCCHHH
Confidence 34458899999999999999999865 433221 0111111111111 122 45778999997543
No 116
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.40 E-value=0.079 Score=65.13 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.4
Q ss_pred CceEEEEeecCCCcccCC
Q 004698 126 TEYNLLLLDSEGIDAYDQ 143 (736)
Q Consensus 126 ~~~~v~llDteG~~~~~~ 143 (736)
....|=+||..||..++.
T Consensus 429 ~~~~IgvLDI~GFE~f~~ 446 (1080)
T 2dfs_A 429 QHSFIGVLDIYGFETFEI 446 (1080)
T ss_dssp CCEEEEEEEECCCCCCSS
T ss_pred cCceEEeeccCCccccCc
Confidence 346788999999987765
No 117
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.39 E-value=0.12 Score=46.70 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698 502 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS 581 (736)
Q Consensus 502 ~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~ 581 (736)
.++.++.+..++..+...++.+...++.++..++..... +...+.+|+.+++.+++.....++||.++.++.+++.
T Consensus 25 LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~----r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 25 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999999999874432 4678899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004698 582 SLSKTVDSL 590 (736)
Q Consensus 582 ~L~~~le~l 590 (736)
+|++.++..
T Consensus 101 FLKk~heeE 109 (119)
T 3ol1_A 101 FLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.39 E-value=0.0086 Score=58.09 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=35.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|.|+|..++|||+|+|+|.+....- ...+....+ +...+. ..++..+.+.++||.|...
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~-~~~~~~------~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTN-KIYKDD------ISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCC-SCEEEE------ECCTTSCCEEEEECCSSCC
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCc-ceeeecccc-ceeeee------ccCCCeeEEEEEECCCCHH
Confidence 7889999999999999999853111 111111211 221111 1134557899999999643
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.37 E-value=0.003 Score=61.03 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|..++|||+|+|+|.+.. |.. ....|.|.-.... + ..+|..+.+.++||+|..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~--~~~---~~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE--IPT---AYVPTVFENFSHV-M---KYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEEE-E---EETTEEEEEEEEEECCSG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC--CCC---ccCCeeeeeeEEE-E---EECCEEEEEEEEECCCcH
Confidence 3448899999999999999999875 421 1123444443321 1 124566788999999954
No 120
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.36 E-value=0.0026 Score=68.89 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=32.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccC-----CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+|+|+.++|||+|+|.|+|.. -|..+. .....|.|+-.....+. .+|..+.+.++||+|+++
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~---~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIE---ERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC-------CEEEEEEEEC------
T ss_pred EEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEee---cCCcccceEEEEeccccc
Confidence 6999999999999999999863 232221 01123555544333221 234456789999999864
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.35 E-value=0.0049 Score=60.07 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|+|+|.|....|...++. |.-.....+. .+|..+.+.++||.|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN-----PEDTYERRIM---VDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS-----CTTEEEEEEE---ETTEEEEEEEECCCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc-----ccceEEEEEE---ECCEEEEEEEEecCCCc
Confidence 345679999999999999999998765334322221 1111111111 24566888999999964
No 122
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.35 E-value=0.0038 Score=60.27 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=37.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|..++|||+|+|+|++.. |.. ...+ |.|.-... .+ ..++..+.+.|+||+|..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR--FIS--EYDP-NLEDTYSS-EE---TVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCc--ccCC-CccceeeE-EE---EECCEEEEEEEEECCCCC
Confidence 38899999999999999999765 431 1222 33332221 11 124556888999999964
No 123
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.34 E-value=0.00089 Score=63.44 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-.=|.|+|+.++|||+|+|+|.+.. |.... ..|.|+-.....+.. +++..+.+.++||+|..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET--FGKQY---KQTIGLDFFLRRITL--PGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG--TTHHH---HHTTTSSEEEEEEEE--TTTEEEEEEEEECTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc--CCCCC---CCceeEEEEEEEEEe--CCCCEEEEEEEECCCCc
Confidence 3458899999999999999999765 42110 123332222222211 22345789999999954
No 124
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.34 E-value=0.0044 Score=60.44 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.5
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|.|+|..++|||+|+|.|.+.. |... . ..|.|.-.... + ..+|..+.+.|+||+|...
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ--FPEV--Y-VPTVFENYIAD-I---EVDGKQVELALWDTAGQED 85 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--CCSS--C-CCSSCCCCEEE-E---EETTEEEEEEEECCCCSGG
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCcc--c-CCcccceEEEE-E---EECCEEEEEEEEECCCchh
Confidence 7899999999999999999765 3211 1 11222211110 1 1135567899999999643
No 125
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.34 E-value=0.0043 Score=59.30 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=37.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+..-|.|+|+.++|||+|+|+|++.. +. .. ..|.|+-.....+ + .+.+.++||+|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VD---TI-SPTLGFNIKTLEH-----R--GFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CS---SC-CCCSSEEEEEEEE-----T--TEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CC---cc-cccCccceEEEEE-----C--CEEEEEEECCCCH
Confidence 44458999999999999999999865 21 11 2244433222111 1 3678999999964
No 126
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.33 E-value=0.0023 Score=61.78 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=36.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMVN---IDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC--CCC--------CCSSEEEEEEE---ETTEEEEEEEECCTTGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEECCCch
Confidence 37899999999999999999765 43211 11222111111111 13556789999999964
No 127
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.33 E-value=0.0035 Score=60.50 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.-|.|+|..++|||+|+|+|++.. |.... ...|.|+-.... ++..+.+.|+||+|...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~--~~~t~~~~~~~~-------~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ--SSSKH--ITATVGYNVETF-------EKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC------C--CCCCSSEEEEEE-------EETTEEEEEEEECCSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--Ccccc--cccccceeEEEE-------EeCCEEEEEEECCCCHh
Confidence 347899999999999999999876 54311 123555444321 13457899999999743
No 128
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.31 E-value=0.0033 Score=68.20 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=34.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccc----cCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~----~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
++.+|+|+|+.++|||+|+|.|.|.. +.+ +.|..+.+.-|.+ +| ..+.++||.|+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~----------~g--~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPI----------NN--RKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE----------TT--EEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEE----------CC--EEEEEEeCCCc
Confidence 56679999999999999999999875 322 2233332222222 23 35788999997
No 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0014 Score=63.24 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..-|.|+|+.++|||+|+|.|++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999875
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.31 E-value=0.00082 Score=65.58 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..=|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|...
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCC--CCCHH---HHHHCCSEEEEEEE---ETTEEEEEEEECCTTCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCcccceEEEEEEE---ECCEEEEEEEEECCCcHh
Confidence 4458899999999999999999865 43211 11222111111111 134557899999999643
No 131
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.30 E-value=0.002 Score=76.16 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
++--|+|+|.+.+|||+|+|.|+|..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478999999999999999999975
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0042 Score=60.94 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|..++|||+|+|.|++.. |... ...|.|...... + ..+|..+.+.|+||+|...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE--FPEV---YVPTVFENYVAD-I---EVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS--CC----------CCEEEEE-E---EETTEEEEEEEEECTTCTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCCc---CCCcccceEEEE-E---EECCEEEEEEEEECCCcHH
Confidence 38899999999999999999865 4321 112333322211 1 1245567899999999653
No 133
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.28 E-value=0.0025 Score=62.77 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=38.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeecccccccc-------CCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTA-------LDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~-------~~g~~~~v~llDteG~ 138 (736)
=|.|+|+.++|||+|+|.|++.. |... ...|.|+-.....+.... ..+..+.+.|+||+|.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK--FNPK---FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC--CCCE---EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCcC---CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 47899999999999999999875 4221 123455433322221110 0011578999999995
No 134
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.28 E-value=0.0041 Score=59.64 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=39.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..=|.|+|+.++|||+|+|+|.+.. |... . ..|.|.-.. ..+ ..++..+.+.++||+|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ECSSCEEEEEEEEECCSGG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC--CCCC--C-CCccceeEE-EEE---EECCEEEEEEEEECCCChh
Confidence 3458899999999999999999865 4321 1 223333221 111 1245568899999999643
No 135
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.28 E-value=0.0041 Score=60.03 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=39.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|.+. ..+ ..+|..+.+.++||.|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~--~~~~~---~~t~~~~~--~~~---~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT--YVQEE---SPEGGRFK--KEI---VVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS--CCCCC---CTTCEEEE--EEE---EETTEEEEEEEEECSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCCcceEE--EEE---EECCEEEEEEEEECCCCh
Confidence 38899999999999999999765 53221 22445433 222 124666888999999964
No 136
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0027 Score=63.15 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=38.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+..=|.|+|+.++|||+|+|.|++.. |.... ..|.|+-.....+. .+|..+.+.|+||+|...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE--FNMDS---KSTIGVEFATRTLE---IEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC--CCC---------CCSEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEECCCccc
Confidence 44568999999999999999999865 43221 12333211111111 135557899999999643
No 137
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0053 Score=58.90 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+-.-|.|+|..++|||+|+|+|.+.... ...+ |.|+-.+...+ + .+.+.++||+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-----t~~~~~~~~~~-----~--~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP-----TIGSNVEEIVI-----N--NTRFLMWDIGGQE 71 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC-----CSCSSCEEEEE-----T--TEEEEEEECCC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC-----CCccceEEEEE-----C--CEEEEEEECCCCH
Confidence 34455899999999999999999976521 2323 33321111111 1 2678999999974
No 138
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.27 E-value=0.0037 Score=60.16 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=37.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|.|+|..++|||+|+|+|++.. .|... ...|.|+-.....+ + .+.+.|+||+|...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~-~~~~~---~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN-AQSQN---ILPTIGFSIEKFKS-----S--SLSFTVFDMSGQGR 79 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG-GCCSS---CCCCSSEEEEEEEC-----S--SCEEEEEEECCSTT
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CCCCC---cCCccceeEEEEEE-----C--CEEEEEEECCCCHH
Confidence 7899999999999999999864 12211 12355654433222 2 26789999999653
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.26 E-value=0.0046 Score=68.98 Aligned_cols=55 Identities=33% Similarity=0.569 Sum_probs=33.0
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc----ceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T----~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..|+|+|..++|||+|+|+|+|.. |......-..| .+..-| ....+.++||+|++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~--~~~v~~~~g~t~~~~~~~~~~-----------~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDTPGVTRDRIYSSAEW-----------LNYDFNLIDTGGID 82 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE--EC-----------CEEEECTT-----------CSSCCEEECCCC--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC--CcccCCCCCcceeEEEEEEEE-----------CCceEEEEECCCCC
Confidence 369999999999999999999875 32111111112 222222 12467889999986
No 140
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.26 E-value=0.0014 Score=62.54 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=24.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+..=|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA--FNST---FISTIGIDFKIRTIE---LDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC------------------C---HHHHHCEEEEEEEEE---ETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCC---CCCcccceeEEEEEE---ECCEEEEEEEEcCCCCh
Confidence 34568999999999999999999764 4321 122444322222111 14556889999999964
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.25 E-value=0.0038 Score=69.36 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcc--cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF--~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|+|+|+.++|||+|+|.|+|....+ ...+++...+.|.+.|. | ..+.++||+|+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~---------g--~~~~l~Dt~G~~ 239 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID---------G--RKYVFVDTAGLR 239 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET---------T--EEEEESSCSCC-
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC---------C--EEEEEEECCCCc
Confidence 469999999999999999999975211 11122223345666653 3 257789999973
No 142
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.23 E-value=0.0018 Score=66.94 Aligned_cols=57 Identities=32% Similarity=0.400 Sum_probs=33.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
-|.|+|..++|||+|+|.|+|... ..+++.. .+|+++-... . + ..+.++||+|+...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~-g~T~~~~~~~----~----~--~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA-SSVGAQP-GITKGIQWFS----L----E--NGVKILDTPGILYK 157 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEE----C----T--TSCEEESSCEECCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc-cccCCCC-CCccceEEEE----e----C--CCEEEEECCCcccC
Confidence 578899999999999999998752 2333321 2344431110 0 1 13678999998654
No 143
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.22 E-value=0.006 Score=59.08 Aligned_cols=55 Identities=15% Similarity=0.049 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|+|+|+.++|||+|+|+|.+.. |... ..|.|.-..... .+| +.+.++||+|...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~--~~~~----~~t~~~~~~~~~-----~~~--~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDR--LATL----QPTWHPTSEELA-----IGN--IKFTTFDLGGHIQ 79 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCCC----CCCCSCEEEEEE-----ETT--EEEEEEECCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCcc----ccCCCCCeEEEE-----ECC--EEEEEEECCCCHH
Confidence 58899999999999999999765 4321 123333221111 123 6789999999754
No 144
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.21 E-value=0.0046 Score=60.42 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.++ -|+|+|+.++|||+|+|+|.+.. |.. .++..+ +.+.+.+ +| +.+.++||+|..
T Consensus 24 ~~~-ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~t~~~-~~~~~~~---------~~--~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTG-KLVFLGLDNAGKTTLLHMLKDDR--LGQHVPTLHP-TSEELTI---------AG--MTFTTFDLGGHI 80 (198)
T ss_dssp CCE-EEEEEEETTSSHHHHHHHHSCC--------CCCCC-SCEEEEE---------TT--EEEEEEEECC--
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhcCC--CCccCCCCCc-eeEEEEE---------CC--EEEEEEECCCcH
Confidence 444 47899999999999999999865 422 222222 2333322 23 678899999964
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.21 E-value=0.0048 Score=64.10 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=36.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
..|+++|+.++|||+|+|.|.|.. +.+++. +. ...|.+- + .+.+.++||+|..+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~-~~~~~~~-----------~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVE-RKSGLVK-----------K-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCS-CEEEECT-----------T-CTTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEE-EEEEEEe-----------c-CCeEEEEECCCcCcc
Confidence 358999999999999999999864 334332 11 1122211 1 245788999998654
No 146
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.20 E-value=0.0038 Score=59.20 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=38.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.=|.|+|+.++|||+|+|+|.+.. |.. ..| |.|.-. ...+ ..+|..+.+.++||+|..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~--~~~---~~~-t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS--YQV---LEK-TESEQY-KKEM---LVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC--CCC---CSS-CSSSEE-EEEE---EETTEEEEEEEEECSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC---cCC-CcceeE-EEEE---EECCEEEEEEEEECCCCc
Confidence 348899999999999999999865 532 112 333211 1111 124556788999999964
No 147
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.20 E-value=0.0026 Score=62.30 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=35.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|..++|||+|+|+|.+.. |.... ..|.|+-.....+. .+|..+.+.|+||+|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA--FSERQ---GSTIGVDFTMKTLE---IQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC--C-------------CEEEEEEE---ETTEEEEEEEECCTTCG
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 348899999999999999999765 43211 23444322211111 13555789999999953
No 148
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.18 E-value=0.056 Score=46.07 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 582 (736)
Q Consensus 503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~ 582 (736)
++.++.+..++..+...++.+...++..+..++..... +...+.+++.+++.++++..-.++||.+++++.+++.+
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~----R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678889999999999999999999999873332 46789999999999999999999999999999999999
Q ss_pred HHHH
Q 004698 583 LSKT 586 (736)
Q Consensus 583 L~~~ 586 (736)
|++.
T Consensus 82 Lkk~ 85 (86)
T 3swk_A 82 LKKL 85 (86)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 9753
No 149
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.17 E-value=0.0042 Score=59.82 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=37.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|..++|||+|+|+|++.. |... ...|.|+-.... ++..+.+.|+||+|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~-------~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ--FNED---MIPTVGFNMRKI-------TKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEE-------EETTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCc---cCCCCceeEEEE-------EeCCEEEEEEECCCCH
Confidence 37899999999999999999765 4321 122445443321 1234788999999964
No 150
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.15 E-value=0.0038 Score=67.58 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=37.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccc-----cccCCC-CceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLK-----RTALDG-TEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~-----~~~~~g-~~~~v~llDteG~~ 139 (736)
-|+|+|.+++|||+|+|.|.+.. +.+++ |..| +.|++.|..+-. ...|.. ....+.|+||+|+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p-~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEP-NTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCC-CSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECc-eEEEEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence 37899999999999999999865 44432 3333 457665532100 000000 01468899999985
No 151
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.0025 Score=62.85 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=36.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+..-|.|+|+.++|||+|+|+|.+.. |....+....|.|... ..+.+.++||+|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS--VRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS--CCCBCCCSSCEEETTG------------GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--CCCeeeecCceEEEEe------------eCceEEEEECCCcHH
Confidence 34458899999999999999999875 4321111112222211 124688999999753
No 152
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.14 E-value=0.0024 Score=71.87 Aligned_cols=61 Identities=28% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.++. |+|+|.+++|||+|+|.|+|....+ + +....+|..+...... .+| +.+.|+||+|+.
T Consensus 232 ~~~k-V~ivG~~nvGKSSLln~L~~~~~a~-v-s~~~gtT~d~~~~~i~-----~~g--~~l~liDT~G~~ 292 (476)
T 3gee_A 232 EGVS-TVIAGKPNAGKSTLLNTLLGQERAI-V-SHMPGTTRDYIEECFI-----HDK--TMFRLTDTAGLR 292 (476)
T ss_dssp HCEE-EEEECCTTSSHHHHHHHCC--------------------CEEEE-----ETT--EEEEEEC-----
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCcc-c-CCCCCceEEEEEEEEE-----ECC--eEEEEEECCCCC
Confidence 3454 8999999999999999999875221 1 1112233333211111 123 578999999974
No 153
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0073 Score=59.16 Aligned_cols=61 Identities=25% Similarity=0.168 Sum_probs=39.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..=|.|+|..++|||+|+|+|.+.. |.. .. ..|.|.... ..+ ..+|..+.+.|+||+|...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK--FPT--DY-IPTVFDNFS-ANV---AVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCS--SC-CCSSCCCEE-EEE---ECSSCEEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCc--cC-CCccceeEE-EEE---EECCEEEEEEEEECCCcHH
Confidence 3458899999999999999999765 421 11 123332221 111 1245668899999999753
No 154
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=96.13 E-value=0.057 Score=59.43 Aligned_cols=118 Identities=10% Similarity=0.145 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004698 585 KTVDSLKNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE-EWKRKYGVAVREAK 662 (736)
Q Consensus 585 ~~le~lk~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~-e~~~ky~~~~~e~k 662 (736)
++=..+++-+++++.+|++. .+.++.++ .++..++.|+. ++..+. +.+++..|++ |++|+|+.+.++.-
T Consensus 57 kqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~-------rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRG-------DFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSS-------HHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHH-------HHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33356677888888888887 66767777 45555557777 666666 8888999999 99999999988775
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHHHHHHHhhHH
Q 004698 663 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK-------------EKATKIEHAEQCLTTLR 719 (736)
Q Consensus 663 alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~-------------~~~~k~~~~~~~~~~~~ 719 (736)
.-+ +-+..++ ..++.++.+++.+-.+++.||+ .=..-|+.++++|.++.
T Consensus 128 nQl-snIrvLQ-------snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 128 EKV-QHIQLLQ-------KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 444 3334444 4445555555555555555532 12334666666666554
No 155
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0075 Score=58.13 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.-|.|+|+.++|||+|+|+|++.. |.- .. ..|.|.... ..+ ..+|..+.+.++||+|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA--FPE--EY-VPTVFDHYA-VSV---TVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--CCC--SC-CCSSCCCEE-EEE---ESSSCEEEEEEECCCCSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCC--CC-CCcccceeE-EEE---EECCEEEEEEEEECCCCcc
Confidence 348899999999999999999764 421 11 122232221 111 1245668899999999753
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.11 E-value=0.0053 Score=60.46 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=39.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|.+.. |... . ..|.|.-.. ..+ ..++..+.+.|+||+|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ESSSSEEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC--c-CCccceeEE-EEE---EECCEEEEEEEEeCCCcHh
Confidence 37899999999999999999865 4321 1 223343321 111 1245668899999999643
No 157
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.08 E-value=0.0055 Score=60.06 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.|+|..++|||+|+|+|.+.. |.- ...+ |.|-.... .+ ..+|..+.+.++||+|...
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIP-TVFDNYSA-NV---MVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCC---CCC-CSEEEEEE-EE---ECC-CEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC--CcCC-eecceeEE-EE---EECCEEEEEEEEECCCchh
Confidence 47899999999999999999654 311 1112 22322111 11 1246678888999999753
No 158
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.08 E-value=0.0062 Score=56.64 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=36.1
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|+.++|||+|+|+|++.. |.- ..| |.|+-.... +...+.+.++||+|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~--~~~---~~~-t~~~~~~~~-------~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE--IVT---TIP-TIGFNVETV-------EYKNISFTVWDVGGQD 55 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC--SSC---CCC-CSSCCEEEE-------ECSSCEEEEEECCCCG
T ss_pred EEEECCCCCCHHHHHHHHHcCC--cCc---ccC-cCceeEEEE-------EECCEEEEEEEcCCCh
Confidence 7899999999999999998765 421 122 555322211 1234678999999964
No 159
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.07 E-value=0.007 Score=57.81 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=35.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|.|+|..++|||+|+|+|++.. |. ..+ |.|+-.....+ + ++.+.++||+|...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~--~~~~~~-----t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNE--VVHTSP-----TIGSNVEEIVI-----N--NTRFLMWDIGGQES 77 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTS--CEEEEC-----CSSSSCEEEEE-----T--TEEEEEEEESSSGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCccCC-----cCceeeEEEEE-----C--CEEEEEEECCCCHh
Confidence 7899999999999999999876 41 222 33322111111 2 26789999999753
No 160
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.04 E-value=0.0039 Score=67.77 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=36.3
Q ss_pred EEeeCCCCCChhHHHHHHhCC----CCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGR----SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~----~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|+++|..++|||+|+|.|+|. .....+++.. .+|.++-... + +. .+.++||||+...
T Consensus 165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-gtT~~~~~~~--~------~~--~~~liDtPG~~~~ 225 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP-GTTLDMIEIP--L------ES--GATLYDTPGIINH 225 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT-TSSCEEEEEE--C------ST--TCEEEECCSCCCC
T ss_pred EEEEcCCCCchHHHHHHHHhhccCCccceeecCCC-CeEEeeEEEE--e------CC--CeEEEeCCCcCcH
Confidence 778999999999999999986 1123333222 2455442211 1 11 2688999999654
No 161
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.01 E-value=0.0063 Score=60.11 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|..++|||+|+|.|++.. |... ..+ |.|.-.. ..+ ..+|..+.+.|+||+|..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~--~~~-t~~~~~~-~~~---~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA--FPES--YTP-TVFERYM-VNL---QVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-----------CC-CCCEEEE-EEE---EETTEEEEEEEEEC----
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCC--CCC-ccceeEE-EEE---EECCEEEEEEEEECCCch
Confidence 348899999999999999999865 4211 112 2222111 111 124556789999999964
No 162
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.00 E-value=0.0085 Score=58.77 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=37.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-|.|+|+.++|||+|+|+|++.. |.-.. .+.+.....+. + .++..+.+.++||+|..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~--~~~~~--~~~~~~~~~~~--~----~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQ--TSITDSSAIYK--V----NNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC--CCCBC--CCCSCEEEEEE--C----SSTTCCEEEEEECCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--ccccc--CCcceeeEEEE--e----cCCCccEEEEEECCCCh
Confidence 358899999999999999999765 43211 12222222211 1 12224789999999964
No 163
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0075 Score=60.09 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..=|.|+|..++|||+|+|+|.|....|. +.. .|.|.-.....+ ..+|..+.++++||.|..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~--~~~--~~~g~d~~~~~i---~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDC--EVLGEDTYERTL---MVDGESATIILLDMWENK 98 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTC--CC-----CCTTEEEEEE---EETTEEEEEEEECCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CcC--CccceeeEEEEE---EECCeeeEEEEeecCCCc
Confidence 34589999999999999999998653342 111 122221111111 124666788999999854
No 164
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.98 E-value=0.0058 Score=58.05 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=34.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcc-cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGF-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF-~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+-.-|.|+|+.++|||+|+|+|++.. | ... .|.|+......+ + .+.+.++||+|...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~-----~t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGE--VVTTK-----PTIGFNVETLSY-----K--NLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE--EEEEC-----SSTTCCEEEEEE-----T--TEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC--cCccC-----CcCccceEEEEE-----C--CEEEEEEECCCCHh
Confidence 34458899999999999999999765 3 112 233422211111 1 26788999999754
No 165
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.98 E-value=0.012 Score=56.26 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 62 AALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 62 ~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+.|..-. .+-.-|.|+|+.++|||+|+|+|.+.. |.- ..| |.|+-.....+ ..+.+.++||+|...
T Consensus 12 ~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~-t~~~~~~~~~~-------~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 12 QTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGD--VVT---TVP-TVGVNLETLQY-------KNISFEVWDLGGQTG 78 (189)
T ss_dssp HHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSC--CEE---ECS-STTCCEEEEEE-------TTEEEEEEEECCSSS
T ss_pred HHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCC--CCC---cCC-CCceEEEEEEE-------CCEEEEEEECCCCHh
Confidence 3343433 344459999999999999999998765 421 112 44422211111 136789999999754
Q ss_pred c
Q 004698 141 Y 141 (736)
Q Consensus 141 ~ 141 (736)
.
T Consensus 79 ~ 79 (189)
T 2x77_A 79 V 79 (189)
T ss_dssp S
T ss_pred H
Confidence 3
No 166
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.97 E-value=0.0037 Score=59.31 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=30.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|+.++|||+|+|+|.+.. |... . ..|.|.-... .+ ..+|..+.+.++||+|...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~--~~~~--~-~~t~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT--FPTD--Y-VPTVFDNFSA-NV---VVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CC-------------CBC-CC---C-------CEEECCCC-CT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC--C-CCeeeeeEEE-EE---EECCEEEEEEEEECCCChh
Confidence 37899999999999999999765 4211 1 2233322211 11 1245567788999999643
No 167
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.97 E-value=0.67 Score=42.37 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 625 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k 625 (736)
+..++.+..++..+...+.....|+.+...+......|..+|.+.+...++. ++......+...++..++.++..+
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~----EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADA----EERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777778888888888888888888888877766555544 444444445556788888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 626 STAAEARLAAAREQALSAQEEVEEWKRKYGVA 657 (736)
Q Consensus 626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~ 657 (736)
+...|+++..+...-..++.++.+++...+.+
T Consensus 92 leeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 92 LEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777766544
No 168
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=95.96 E-value=1.8 Score=44.66 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHhhHHHHhhhh
Q 004698 650 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI----EHAEQCLTTLRLELKVS 725 (736)
Q Consensus 650 ~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~----~~~~~~~~~~~~~l~~~ 725 (736)
++.+.+....+.+.-++.-+....+..++.+.++.=+-+.|..++.. .+++++.|+ ...+.+++-+-.+++.+
T Consensus 192 lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~---~~e~l~~~l~~~~~~~~~~~~~~~~d~~~~ 268 (273)
T 3s84_A 192 VRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQ---QMEQLRQKLGPHAGDVEGHLSFLEKDLRDK 268 (273)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH---HHHHHHHHHSCC------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH---HHHHHHHHhCcchhhHHhhhhHHHHHHHHH
Confidence 33344444444444444445555555555555555555555444432 255666665 44556666666666665
Q ss_pred hhh
Q 004698 726 FFD 728 (736)
Q Consensus 726 ~~~ 728 (736)
.-.
T Consensus 269 ~~~ 271 (273)
T 3s84_A 269 VNS 271 (273)
T ss_dssp ---
T ss_pred hhc
Confidence 543
No 169
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.95 E-value=0.0062 Score=68.56 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=36.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|+|+|.+++|||+|+|.|++.. +........+|..+.... +. .+| ..+.|+||+|+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~--i~---~~g--~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEE--IV---IRG--ILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEE--EE---ETT--EEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEE--Ee---cCC--eEEEEEECCCcc
Confidence 58899999999999999999865 222111112232211111 10 123 568999999986
No 170
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.93 E-value=0.0075 Score=66.95 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=35.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC--C-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS--T-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~--~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.|+|+|..++|||+|+|+|.|....+ +.+ + +.....|...|. | ..+.|+||+|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~-v~~~~g~T~d~~~~~~~~~---------~--~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY---------G--KTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEET---------T--EEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce-ecCCCCCccceeeEEEEEC---------C--eEEEEEECCCccc
Confidence 68999999999999999999876211 221 1 112234555563 2 3578899999853
No 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.88 E-value=0.0036 Score=60.88 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=37.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+..=|+|+|..++|||+|+|+|.|....|. +.. .|.|.-.....+ ..+|..+.++++||.|..+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~--~~~--~~~~~~~~~~~~---~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDX--EVLGEDTYERTL---MVDGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------GGGCTTEEEEEE---EETTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcC--ccc--cccceeEEEEEE---EECCeEEEEEEEEeccCcc
Confidence 445589999999999999999997543232 111 112221111111 1246667889999998653
No 172
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0035 Score=60.54 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=36.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.|+||+|.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT--FTPAF---VSTVGIDFKVKTVY---RHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT--TCCCE---EEEETTTEEEEEEE---ETTTTEEEEEECHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcCC--CCccc---CCCeeeEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence 37899999999999999999754 32111 11222211111111 1345578999999994
No 173
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.86 E-value=1.2 Score=42.21 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=72.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004698 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 644 (736)
Q Consensus 565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~ 644 (736)
+++.|++++..+.+.+..-.+...-+++.-+++...+. .+.....+|+.+|..++.....+.++...++
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~-----------~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSIS-----------QLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555555555555555544432 2333444566666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH----H
Q 004698 645 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR----L 720 (736)
Q Consensus 645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~----~ 720 (736)
..+..=|+-..+. .+.+...+.++..+...++.++.....+.. +.+.++.++-..|+.-+++- -
T Consensus 76 a~L~qEr~~r~q~--------se~~~elq~ri~~L~~El~~~k~~~~k~~~----e~r~L~Ekl~~lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 76 AILEAERRDRGHD--------SEMIGDLQARITSLQEEVKHLKHNLEKVEG----ERKEAQDMLNHSEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5542222222211 122233334444444444444444444443 35888999999998888777 4
Q ss_pred Hhhh
Q 004698 721 ELKV 724 (736)
Q Consensus 721 ~l~~ 724 (736)
+||.
T Consensus 144 eLKa 147 (168)
T 3o0z_A 144 KLKS 147 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4554
No 174
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.86 E-value=0.0051 Score=66.80 Aligned_cols=57 Identities=26% Similarity=0.202 Sum_probs=34.4
Q ss_pred EEeeCCCCCChhHHHHHHhCCCC-----cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~-----gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|+++|..++|||+|+|.|+|... ...+++. ..+|...-... + .++ +.|+||||+...
T Consensus 163 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-~gtT~~~~~~~--~----~~~----~~liDtPG~~~~ 224 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF-PGTTLDLIDIP--L----DEE----SSLYDTPGIINH 224 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC-C----CEEEEE--S----SSS----CEEEECCCBCCT
T ss_pred EEEecCCCCChhHHHHHHHhhhccccccceecCCC-CCeecceEEEE--e----cCC----eEEEeCCCcCcH
Confidence 67899999999999999998631 1222222 22454443321 1 112 688999999654
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.85 E-value=0.0065 Score=65.50 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=23.1
Q ss_pred cCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 67 VKEPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 67 i~~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
...+..+|+|+|..++|||+|+|.|.+
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999999863
No 176
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.83 E-value=0.0075 Score=66.85 Aligned_cols=59 Identities=32% Similarity=0.483 Sum_probs=29.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..|+|+|..++|||+|+|+|.|.. |...+..-..|.........+ +| ..+.|+||.|+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~--~~~v~~~~g~T~d~~~~~~~~-----~~--~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDTPGVTRDRIYSSAEW-----LN--YDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEE--CC-----------CEEEECTT-----CS--SCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCCccceEEEEEEE-----CC--ceEEEEECCCCC
Confidence 368999999999999999999875 332111112232221111110 12 457889999985
No 177
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.82 E-value=0.0084 Score=57.44 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+..-|.|+|+.++|||+|+|+|.+.. |.. -..|.|+-.....+ + .+.+.++||+|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~----~~~t~g~~~~~~~~-----~--~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH----ITPTQGFNIKSVQS-----Q--GFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE----EEEETTEEEEEEEE-----T--TEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CCc----ccCcCCeEEEEEEE-----C--CEEEEEEECCCCH
Confidence 345568999999999999999999874 321 12355644332221 1 3678899999964
No 178
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.82 E-value=0.0065 Score=66.97 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=36.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC---CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS---SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.-.+|+|+|+.++|||||+|.|+|.. .|=-.-++. +.|...+++..|. . ..+.+.|+.|++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~-~~t~~~~v~q~~~------~--~~ltv~D~~g~~ 131 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV-EVTMERHPYKHPN------I--PNVVFWDLPGIG 131 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSS------C--TTEEEEECCCGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe-ecceeEEeccccc------c--CCeeehHhhccc
Confidence 44589999999999999999999942 221111111 2232223433321 1 136778999986
No 179
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.76 E-value=0.002 Score=72.14 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=32.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
.+. |+|+|++++|||+|+|.|+|.. +...+.....|..+... .+ ..+| +.+.|+||+|+.
T Consensus 224 ~~k-V~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~--~i---~~~g--~~v~liDT~G~~ 283 (462)
T 3geh_A 224 GLK-VAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVES--QL---VVGG--IPVQVLDTAGIR 283 (462)
T ss_dssp CEE-EEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHH--EE---EETT--EEEEECC-----
T ss_pred CCE-EEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEE--EE---EECC--EEEEEEECCccc
Confidence 444 8999999999999999999864 32222222233322111 01 0123 568999999974
No 180
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.75 E-value=0.0093 Score=62.90 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=38.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|+++|..++|||+|+|+|++....|.. + .-..|.|+-.....+ +| .+.+.++||+|..
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~~~~~~~-~-~~~~Ti~~~~~~~~~-----~~-~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSNYSAFDT-R-RLGATIDVEHSHLRF-----LG-NMTLNLWDCGGQD 63 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSCCCTGGG-G-GCCCCCSEEEEEEEE-----TT-TEEEEEEEECCSH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccc-c-CcCCccceEEEEEEe-----CC-ceEEEEEECCCcH
Confidence 789999999999999999987544431 1 112355554432211 23 4789999999964
No 181
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.75 E-value=0.011 Score=58.50 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=39.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
=|.|+|..++|||+|+|+|++.. |.. ....|.|.-... .+ ..++..+.+.++||.|...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~--~~~---~~~~t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC--YPE---TYVPTVFENYTA-CL---ETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEE-EE---EC--CEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC---CcCCeeeeeEEE-EE---EECCEEEEEEEEECCCCHh
Confidence 47899999999999999999765 432 122355554421 11 1245668899999999643
No 182
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.53 E-value=0.071 Score=61.12 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (736)
Q Consensus 565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~ 624 (736)
++..++..+..+.++.....+.+...+.++.+.+..|+..........+.+.+.+..++.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 516 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE 516 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHh
Confidence 344444555555555555555555556666665555543222222333444455554444
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.53 E-value=0.012 Score=63.10 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
..+..+|+|+|+.++|||+|+|.|++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35667899999999999999999974
No 184
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.48 E-value=0.03 Score=61.22 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=39.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcc-cccC---CCCCccceEEeeccc-cc--cccCCCC---ceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGF-QVAS---THRPCTKGLWLWSAP-LK--RTALDGT---EYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF-~~~~---~~~~~T~Giw~w~~p-~~--~~~~~g~---~~~v~llDteG~~ 139 (736)
.|+|+|+.++|||||+|.|.|.. + .+++ ++...+.|...+..+ +. ....++. ...+.++||+|+.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~--~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSV--LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST--TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 68999999999999999999854 2 2222 123346777665321 00 0000011 1247889999985
No 185
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.45 E-value=0.039 Score=61.46 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=37.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
+..-|+|+|..++|||+|+|.|+|... +.+++. ......+.+-| +| ..+.|+||+|+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~---------~~--~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTY---------NQ--QEFVIVDTAGMRK 255 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEE---------TT--EEEEETTGGGTTT
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEE---------CC--ceEEEEECCCCCc
Confidence 345689999999999999999998752 222221 11111222222 23 3688999999854
No 186
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.39 E-value=0.019 Score=63.65 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=35.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|+|+|..++|||+|+|+|+|.. |...+.....|..... .++. .+| ..+.|+||+|+..
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~d~~~--~~~~---~~~--~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVD--TSFT---YNQ--QEFVIVDTAGMRK 235 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST--TEEEC---------CC--EEEE---ETT--EEEEETTHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCC--ceeecCCCCceeeeeE--EEEE---ECC--eEEEEEECCCcCc
Confidence 3458899999999999999999875 3321112223333211 1111 123 3588999999853
No 187
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.38 E-value=0.013 Score=56.74 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=36.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
+-.-|.|+|+.++|||+|+|+|++.. |.- . ..|.|+-..... ...+.+.++||+|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~--~~~---~-~~t~~~~~~~~~-------~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGE--IVT---T-IPTIGFNVETVE-------YKNICFTVWDVGGQD 84 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSC--CEE---E-EEETTEEEEEEE-------ETTEEEEEEECC---
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCC--ccc---c-CCcCceeEEEEE-------ECCEEEEEEECCCCH
Confidence 34459999999999999999998765 431 1 225553222111 124788999999974
No 188
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.34 E-value=1.9 Score=40.49 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698 661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (736)
Q Consensus 661 ~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~ 694 (736)
.++.+++.+...+..+.++...++.+++++..++
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666554
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.31 E-value=0.021 Score=63.08 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=32.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCC---CcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 74 VSVCGRARQGKSFILNQLLGRS---SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
|+|+|+.++|||+|+|.|+|.. .|.. +.. ..+.|.++-..+..+. .++....+-+.||.|++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~-~~~~~~~~t~~~~~i~~v~q---~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYP-GPSHRIKKTVQVEQSKVLIK---EGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCC-SCC-----CCEEEEEECC---------CEEEEEEECC----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCC-CcccCCccceeeeeEEEEEe---cCCcccceeeeechhhhh
Confidence 4999999999999999999864 2210 000 0122334322111111 123335688899999864
No 190
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.28 E-value=0.0048 Score=61.09 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-.=|.|+|..++|||+|+|+|++.. |.... ..|.|+-.....+. .++..+.+.++||+|..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE--FEKKY---VATLGVEVHPLVFH---TNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH--HTCEE---ETTTTEEEEEEEEE---ETTEEEEEEEEEECSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEeCCChH
Confidence 3458899999999999999966432 21110 11223222222111 13455789999999964
No 191
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.28 E-value=0.028 Score=63.90 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----------C-----CCccceEEeeccccccccCCCCceEEEEee
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----------H-----RPCTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----------~-----~~~T~Giw~w~~p~~~~~~~g~~~~v~llD 134 (736)
...-|+|+|..++|||+|+|+|++....+...+. + ...+.||-+-...... +...+.+.|+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~---~~~~~~i~liD 88 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF---PYHDCLVNLLD 88 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE---EETTEEEEEEC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE---EECCeEEEEEE
Confidence 4567999999999999999999964322211000 0 0124455433322211 12347789999
Q ss_pred cCCCcc
Q 004698 135 SEGIDA 140 (736)
Q Consensus 135 teG~~~ 140 (736)
|+|..+
T Consensus 89 TPG~~d 94 (529)
T 2h5e_A 89 TPGHED 94 (529)
T ss_dssp CCCSTT
T ss_pred CCCChh
Confidence 999743
No 192
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.17 E-value=0.019 Score=62.85 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=33.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccc-cc----cccCC-CCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAP-LK----RTALD-GTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p-~~----~~~~~-g~~~~v~llDteG~~ 139 (736)
-|+|+|+.++|||+|+|.|.|.. +.+++ |..| +.|...+..+ +. ...|. .-...+.|+||+|+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p-~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDP-NESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC---------------CC-SEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCc-eeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 37899999999999999999875 33332 2333 3455444211 00 00000 001358999999974
No 193
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.16 E-value=0.016 Score=58.05 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=36.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
|.|+|..++|||.|++++.+.. |... -..|.|+-.....+. .++..+.+-+.||.|..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~--f~~~---~~~Tig~d~~~k~~~---~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC--CC-------------CEEEEEE---CSSCEEEEEEECCSCTT
T ss_pred EEEECcCCcCHHHHHHHHHhCC--CCCC---cCCccceEEEEEEEE---ecceEEEEEEEECCCch
Confidence 6789999999999999998655 6432 234667655444332 35667889999999964
No 194
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.13 E-value=2.2 Score=40.04 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 521 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600 (736)
Q Consensus 521 es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ 600 (736)
..+++++..++..++.....+..++ .+.+.+..+......+..+...|..++..-..+....+.....+.+|+.++...
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE-~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYN-QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544333333222 122334444444455666666666666666666666666667777777777766
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 601 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 657 (736)
Q Consensus 601 yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~ 657 (736)
.=+.+|.- --....+-..++.|...+++++.+....+++.+.++.++|+-.+.+
T Consensus 95 LFeEAN~M---Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 95 LFDEANNM---VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53333322 1122333334445555555566666777777777776666654433
No 195
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.10 E-value=0.013 Score=60.78 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|+|+|+.|+|||||||.|+|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 196
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.09 E-value=0.014 Score=62.76 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
++-|+++|..++|||+|+|.|.+.. +.+.+ ++...+.|++-+. + ...++|+||+|+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~--------~--~~~~~l~DtPG~i 217 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETD--------D--GRSFVMADLPGLI 217 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECS--------S--SCEEEEEEHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeC--------C--CceEEEecCCCCc
Confidence 4569999999999999999999764 33321 2222344554331 1 1468899999974
No 197
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.07 E-value=0.017 Score=65.21 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHh
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.+..+|+|+|++++|||||+|.|+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.06 E-value=0.023 Score=62.70 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+-+.-|+|+|+.|+|||||||.|+|..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 333339999999999999999999974
No 199
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.93 E-value=0.0073 Score=59.39 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=24.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC---CcccccCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS---SGFQVAST 103 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~ 103 (736)
+|+|+||.|+|||||++.|+|.. .|+.+.++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~t 39 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHT 39 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCchhceeeeeee
Confidence 68899999999999999998742 34444443
No 200
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.92 E-value=0.0061 Score=59.10 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|+|||||++.|+|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999753
No 201
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.90 E-value=0.032 Score=58.46 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=39.2
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
..-|.|+|..++|||+|+|++.+.. |. ....+.|...+... + ..+|..+.+.|+||+|...
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~--~~~~~t~~~~~~~~--~---~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FP--GEYIPTVFDNYSAN--V---MVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CC--CSCCCCSEEEEEEE--E---EETTEEEEEEEEEECCCGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CC--cccCCcccceeEEE--E---EECCEEEEEEEEeCCCchh
Confidence 3458899999999999999999654 31 11223232222211 1 1246667788999999754
No 202
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.83 E-value=0.037 Score=62.12 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..+..=|+|+|...+|||+|+|+|++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~ 57 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDL 57 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444457799999999999999998663
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.82 E-value=0.02 Score=60.27 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEeeCCCCCChhHHHHHHhCC
Q 004698 74 VSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~ 94 (736)
|+|+|+.++|||+|+|.|+|.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999999986
No 204
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.011 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.++|||||++.|++..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999998753
No 205
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.80 E-value=0.005 Score=60.04 Aligned_cols=59 Identities=25% Similarity=0.192 Sum_probs=36.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
-|.|+|..++|||+|+|+|++.. |.-. . ..|.|-... ..+ ..+|..+.+.++||+|...
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNA--FPGE--Y-IPTVFDNYS-ANV---MVDGKPVNLGLWDTAGQED 90 (204)
Confidence 48899999999999999998654 3211 1 122222111 111 1245557778999999643
No 206
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.76 E-value=0.4 Score=54.85 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=8.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 572 ENISLREKSSSLSKTVDSLKNEIS 595 (736)
Q Consensus 572 k~~sl~~r~~~L~~~le~lk~e~~ 595 (736)
....+++.+..+...+..++.+..
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~ 473 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQI 473 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 207
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.73 E-value=0.026 Score=64.24 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=37.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeecccc-----ccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPL-----KRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~-----~~~~~~g~~~~v~llDteG~~ 139 (736)
-.=|+++|..++|||+|+|.|.+.. |. .....|.|+-+...-. .....++..+.+.+.||+|..
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~--~~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGET--FD---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 3458899999999999999999875 43 1223355554442210 000123456889999999954
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.72 E-value=0.028 Score=59.10 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++++|+.++|||+|||.|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 78999999999999999999853
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.70 E-value=0.038 Score=59.93 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEeeCCCCCChhHHHHHHhCC
Q 004698 74 VSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~ 94 (736)
|+|+|++++|||+|+|.|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999975
No 210
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.70 E-value=0.073 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|-.-|+++|..++|||+|+|.|.|.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 34456899999999999999999985
No 211
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.68 E-value=0.04 Score=63.57 Aligned_cols=104 Identities=17% Similarity=0.293 Sum_probs=52.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccc---ccCCCC-----CccceEEeeccccc--cccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~---~~~~~~-----~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~ 139 (736)
.+--|+|+|...+|||+|+|+|++....+. ++.+.- -.+.||=+...... ...++|..+.+-|+||+|..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 466789999999999999999985321111 111100 11244443322111 11235677889999999975
Q ss_pred ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
++.. ...-+|...=.-++||.....+..+.+..+
T Consensus 85 dF~~-----ev~r~l~~aD~aILVVDa~~gv~~qt~~~~ 118 (600)
T 2ywe_A 85 DFSY-----EVSRALAACEGALLLIDASQGIEAQTVANF 118 (600)
T ss_dssp GGHH-----HHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred hHHH-----HHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 4311 223344443344566666655555544443
No 212
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.65 E-value=0.048 Score=64.07 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
..+..|+|+|..++|||+|+|+|++
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999994
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.60 E-value=0.013 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSS 96 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~ 96 (736)
+|+|+||.++|||+|+|.|++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999997643
No 214
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.54 E-value=0.044 Score=63.22 Aligned_cols=104 Identities=17% Similarity=0.293 Sum_probs=48.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCccc---ccCCCC-----CccceEEeeccccc--cccCCCCceEEEEeecCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~---~~~~~~-----~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~ 139 (736)
.+--|+|+|...+|||+|+++|++....+. ++.+.. -.+.||=+-..... ....+|..+.+-|+||+|..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 456689999999999999999986432221 111110 11345544322111 11225677889999999974
Q ss_pred ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
++.. ...-+|...=.-++||.....+..+.+..+
T Consensus 83 dF~~-----ev~~~l~~aD~aILVVDa~~gv~~qt~~~~ 116 (599)
T 3cb4_D 83 DFSY-----EVSRSLAACEGALLVVDAGQGVEAQTLANC 116 (599)
T ss_dssp GGHH-----HHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred HHHH-----HHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 3221 223334443344566666555554444433
No 215
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.49 E-value=0.024 Score=64.53 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+-.|+|+|..++|||+|+|.|++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHh
Confidence 466799999999999999999973
No 216
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.46 E-value=0.44 Score=44.66 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=68.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645 (736)
Q Consensus 566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~ 645 (736)
+..++-+++.+++|+.....+|+.+.+. +++...-...|.++...-++++..+..++.-++.
T Consensus 5 i~llEeeLer~eerl~~a~~kLeeaek~------------------adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~ 66 (147)
T 2b9c_A 5 IQLVEEELDRAQERLATALQKLEEAEKA------------------ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 66 (147)
T ss_dssp ------CCGGGGTTTTHHHHHHHHHHHH------------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444333 3333344445667777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698 646 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (736)
Q Consensus 646 E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~ 694 (736)
-+.+=-+||+.+-.+. +.++......+-+.+.+..+...|+++++.+-
T Consensus 67 ~aeeadrKyeE~~RKl-~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 67 IAEDADRKYEEVARKL-VIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999988877 55666666666666666666666666666543
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.39 E-value=0.012 Score=62.13 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.++|||||+|.|+|.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7899999999999999999985
No 218
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.37 E-value=1 Score=41.19 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 509 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGE 572 (736)
Q Consensus 509 i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k 572 (736)
...++.+++..+.+++.+++.++.+-...+..+.+.+.+|+..+.+.+..+..++.++..+..+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567888888899999999888888888888888888888887777644444444444433333
No 219
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.37 E-value=0.089 Score=57.63 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..+...|+|+|...+|||+|+|+|.|..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCc
Confidence 4567789999999999999999999763
No 220
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.30 E-value=0.031 Score=61.61 Aligned_cols=57 Identities=28% Similarity=0.251 Sum_probs=38.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
..+|+|+|+.++|||||||.|.+.. ..+.. +....+.|+..+. + ...+.+.||+|+.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~---------~-~~~~~l~DtpGli 216 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVS---------E-EERFTLADIPGII 216 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECS---------S-SCEEEEEECCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEec---------C-cceEEEEeccccc
Confidence 4579999999999999999999874 22221 1122345554332 1 2457889999974
No 221
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.25 E-value=0.025 Score=55.79 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..+-.+|+|+|+.++|||||++.|.|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998753
No 222
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.16 E-value=0.93 Score=42.41 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK 607 (736)
Q Consensus 568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~ 607 (736)
.|+..-..-++++..|..+|...+....+-.++|++...+
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RK 81 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK 81 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555556677888888888888888888888888765443
No 223
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.16 E-value=0.057 Score=60.67 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=47.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCC-----cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGT 146 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~-----gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~ 146 (736)
..|+|+|...+|||+|+|+|.|... .+... .....|..+-.+..++ + ...+.|+||+|...+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~-----~--~~~i~iiDtPGh~~~~---- 87 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPES-QKRGITIDIGFSAFKL-----E--NYRITLVDAPGHADLI---- 87 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEE-----T--TEEEEECCCSSHHHHH----
T ss_pred CEEEEECCCCChHHHHHHHHHCCCccccccccccc-ccCccEEecceEEEEE-----C--CEEEEEEECCChHHHH----
Confidence 3589999999999999999998651 11110 0011222221111111 1 2578899999963211
Q ss_pred cchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698 147 YSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (736)
Q Consensus 147 ~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (736)
...+..++..=.-++|+.....+..+..+++.+
T Consensus 88 -~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~ 120 (482)
T 1wb1_A 88 -RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI 120 (482)
T ss_dssp -HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHH
T ss_pred -HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHH
Confidence 122222222112245565555555666665543
No 224
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.15 E-value=0.39 Score=52.94 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHhhHHHHHH
Q 004698 689 EFSSTLAEKEE 699 (736)
Q Consensus 689 e~~~~~~e~~~ 699 (736)
.+++.+.++..
T Consensus 217 ~fKsq~q~~~~ 227 (562)
T 3ghg_A 217 NFKSQLQKVPP 227 (562)
T ss_dssp -----------
T ss_pred hhhhhccccCH
Confidence 34444444333
No 225
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.15 E-value=0.038 Score=60.48 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+..-|+|+|...+|||+|+|+|++.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 45667999999999999999999873
No 226
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.12 E-value=0.088 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+..-|+|+|...+|||+|+|+|++..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 456678999999999999999998654
No 227
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.12 E-value=1.4 Score=38.48 Aligned_cols=26 Identities=4% Similarity=0.100 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 561 DYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 561 ~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
.|.-++..|..+.+++.+|...+..+
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~ 31 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 228
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.07 E-value=0.0089 Score=68.06 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=36.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~ 142 (736)
+|+|+|...+|||+|+|+|.+.. |.... ....|..+..+..++ ++| ..+.|+||+|...+.
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~~--~~~~~-~~giT~~i~~~~v~~----~~g--~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKTQ--VAAME-AGGITQHIGAFLVSL----PSG--EKITFLDTPGHAAFS 66 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHHH--HHHSS-SCCBCCCTTSCCBCS----SCS--SCCBCEECSSSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ccccc-CCceeEEEeEEEEEe----CCC--CEEEEEECCChHHHH
Confidence 48999999999999999998754 32221 111222222222111 123 247789999975443
No 229
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.04 E-value=0.053 Score=56.99 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+++++|+.++|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 230
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.01 E-value=2.3 Score=37.05 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 560 DDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 560 e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
+.|.-++..|..+.+++.+|...+..+
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~ 31 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 231
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.00 E-value=0.05 Score=61.03 Aligned_cols=56 Identities=20% Similarity=0.098 Sum_probs=37.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~ 140 (736)
.-|.|+|..++|||+|+|+|.+.. |.. . ..|.|+-.-.. ++..+.+.|+||.|...
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~--~~~---~-~~T~~~~~~~~-------~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ--SVT---T-IPTVGFNVETV-------TYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CCC---C-CCCSSEEEEEE-------ESSSCEEEEEEECCCGG
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--CCC---c-CCccceeEEEE-------EeCCEEEEEEECCCcHH
Confidence 347799999999999999999765 321 1 12444433221 12336799999999654
No 232
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.00 E-value=0.031 Score=59.50 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=36.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~ 139 (736)
-|.|+|..++|||+|+|+|.+.. |.-. . .|.|+-.... ++..+.+.|+||+|..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~--~~~~---~-pT~~~~~~~~-------~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE--IVTT---I-PTIGFNVETV-------EYKNISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC--CEEE---E-EETTEEEEEE-------EETTEEEEEEECC---
T ss_pred eEEEECCCCccHHHHHHHHhCCC--CCCc---c-cccceEEEEE-------ecCcEEEEEEECCCCH
Confidence 48899999999999999999876 4211 1 2666544322 1234789999999953
No 233
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.96 E-value=0.94 Score=41.49 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698 509 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENI 574 (736)
Q Consensus 509 i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~ 574 (736)
...++.+++..+.+++.+++.++.+-...+..+.+.+.+|+..+.+.+..+..++.++..+..++.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888878888888888888777665555444444444444333
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.91 E-value=0.027 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 69999999999999999999864
No 235
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=93.89 E-value=6.7 Score=40.37 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698 644 QEEVEEWKRKYGVAVREAKAALEKAAIVQE----RTSKEMQQREDVLREEFSSTLAEKEEE 700 (736)
Q Consensus 644 ~~E~~e~~~ky~~~~~e~kalle~~~~~~e----~~~e~~~~~~~~l~~e~~~~~~e~~~~ 700 (736)
+.-+.+++.+.+..+.+.|.-|+-.++... ...++++..+..+..+++-..++.-..
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~ 224 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRR 224 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777766665543 445566666666666666666555444
No 236
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.89 E-value=0.027 Score=63.08 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=30.4
Q ss_pred ceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 53 KFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 53 ~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
...++++.+..+. ..+..-|+|+|....|||+|+|+|++.
T Consensus 27 ~~~~~~~~~~~~~--~k~~~~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 27 QNEVDQELLKDMY--GKEHVNIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp TTTCCSTTHHHHS--CCEEEEEEEEECGGGTHHHHHHHHHHH
T ss_pred ccccCHHHHHhhc--CCCeeEEEEEECCCCCHHHHHHHHHHH
Confidence 3455666666554 356667999999999999999999854
No 237
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=93.82 E-value=0.15 Score=59.99 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=40.7
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCC-----------CccceEEeeccccccc----cCCCCceEEEEee
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----------PCTKGLWLWSAPLKRT----ALDGTEYNLLLLD 134 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~-----------~~T~Giw~w~~p~~~~----~~~g~~~~v~llD 134 (736)
.+..|+|+|..++|||+|+++|+.....|.-...+. ..+.||=+-....... ..++..+.+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 456799999999999999999985432221110000 0023333322211110 1235558899999
Q ss_pred cCCCcc
Q 004698 135 SEGIDA 140 (736)
Q Consensus 135 teG~~~ 140 (736)
|+|..+
T Consensus 89 TPG~~d 94 (704)
T 2rdo_7 89 TPGHVD 94 (704)
T ss_pred CCCccc
Confidence 999743
No 238
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.073 Score=61.58 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..-|+|+|...+|||+|+|+|++..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhc
Confidence 34457899999999999999999774
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.77 E-value=0.024 Score=55.13 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|+|||||++.|.|..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999998753
No 240
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=93.66 E-value=0.11 Score=57.59 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=21.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..-|+|+|...+|||+|+|+|++..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 34458899999999999999997653
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.65 E-value=0.027 Score=55.57 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+|+|+||.++|||||++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999999764
No 242
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.64 E-value=0.029 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 243
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=93.63 E-value=0.097 Score=61.45 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
..+..|+|+|..++|||+|+|+|+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.53 E-value=0.028 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.++|||||++.|.|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998864
No 245
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.47 E-value=0.033 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+ .+++|+|+.|+||||||+.|.|-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999999864
No 246
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.44 E-value=3 Score=36.34 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698 615 VCSEIEVLKSRSTAAEARLAAAREQALSA 643 (736)
Q Consensus 615 ~~~~i~~L~~k~~~~E~~~~~~~~q~~~~ 643 (736)
...++..|+.|++.+|..+..+..++..+
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333
No 247
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.42 E-value=5.2 Score=37.59 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 004698 549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 628 (736)
Q Consensus 549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~ 628 (736)
+.-+..+...+..+.+..-.|+..-....+|...+..++..+.....+-..+|+..-.. ...+++.|+.|.+++..
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs----v~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS----VTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33444444444555555556666666666666666666666666666666666432221 33456666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 629 AEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 629 ~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
..+......+.++.+-.++..+..++..+.++.
T Consensus 117 ~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 117 QKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 666667777777777777766666666666554
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.42 E-value=0.036 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 249
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.38 E-value=0.058 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999999863
No 250
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.34 E-value=0.039 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|+|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.31 E-value=0.033 Score=55.65 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.30 E-value=0.039 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|+|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.29 E-value=0.041 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|+++|+.|+|||||++.+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4799999999999999999663
No 254
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.28 E-value=0.028 Score=55.04 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.++|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999875
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.27 E-value=0.039 Score=57.03 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999864
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.26 E-value=0.03 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+-.+|+|+|+.++|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999875
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.26 E-value=0.04 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.25 E-value=0.04 Score=57.27 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999999864
No 259
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=93.24 E-value=0.16 Score=54.96 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
.|+++|....|||+|+|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999998
No 260
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.23 E-value=0.069 Score=57.94 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999864
No 261
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.22 E-value=0.13 Score=56.28 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+..-|+|+|...+|||+|+|+|.|..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 455678999999999999999999763
No 262
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.16 E-value=0.042 Score=56.44 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 263
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.16 E-value=0.042 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 264
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.15 E-value=0.043 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+|+|+|+.|+||||||+.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 265
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.13 E-value=0.068 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999864
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.10 E-value=0.034 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.++||||||+.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.04 E-value=0.045 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999864
No 268
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.99 E-value=0.046 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.312 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 78999999999999999999864
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.98 E-value=0.047 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999864
No 270
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.93 E-value=0.047 Score=55.75 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.|+||||||+.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.89 E-value=0.047 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|+|+|+.++|||||++.|.|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999986
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.87 E-value=0.033 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|+|||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998743
No 273
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.85 E-value=0.049 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 274
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.79 E-value=0.043 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 275
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.79 E-value=0.051 Score=56.12 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.|+||||||+.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.77 E-value=0.043 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|+|||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999854
No 277
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.76 E-value=0.051 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 278
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.75 E-value=0.18 Score=60.62 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
...+.-|+|+|..++|||+|+|+|++.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 346777999999999999999999864
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.70 E-value=0.053 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999864
No 280
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.70 E-value=0.042 Score=51.51 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=30.2
Q ss_pred eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 56 l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|.+++..|..+.+ .++.++|+.++|||+|++.+.+.
T Consensus 23 ~n~~~~~~l~~~~g--~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 23 ENAELVYVLRHKHG--QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CTHHHHHHCCCCCC--SEEEEESSSTTTTCHHHHHHHHH
T ss_pred ccHHHHHHHHhcCC--CEEEEECCCCCCHHHHHHHHHHH
Confidence 56788888877733 36788999999999999999874
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.67 E-value=0.054 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+||||||+.|.|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999863
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.65 E-value=0.055 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 283
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.61 E-value=0.045 Score=63.14 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
..++.-|+|+|...+|||+|+|+|++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence 45677899999999999999999975
No 284
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.54 E-value=0.087 Score=60.70 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=52.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCccccc-CCCCCccceEEeeccc--------cccc-cCCCCceEEEEeecCCCcccC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA-STHRPCTKGLWLWSAP--------LKRT-ALDGTEYNLLLLDSEGIDAYD 142 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-~~~~~~T~Giw~w~~p--------~~~~-~~~g~~~~v~llDteG~~~~~ 142 (736)
+|+|+|...+|||+|+|+|++.. |.-. ++.-..|-|......+ .... ..+.....+.|+||+|..++.
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred EEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 68999999999999999999753 2110 0000123343322110 0000 000111258899999976543
Q ss_pred CCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (736)
Q Consensus 143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~ 180 (736)
..... ++...=.-++||.....+..+.++.+.+
T Consensus 85 ~~~~r-----~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 85 TLRKR-----GGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TSBCS-----SSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHH-----HHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 32111 1111112356777776666766665543
No 285
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.42 E-value=0.049 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+-.||+|+|+.++|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34568999999999999999999875
No 286
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.29 E-value=0.052 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-.+|+|+|+.++|||||++.|.|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.22 E-value=0.057 Score=55.59 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=25.9
Q ss_pred HHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 60 Al~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++-+. + .|=.+|+|+||.|+||||||+.|+|.
T Consensus 16 vl~~i~-i-~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-H-RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-G-CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-h-CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 444454 3 34458999999999999999999874
No 288
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.18 E-value=0.033 Score=62.78 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|...+|||+|+|+|.+.
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~ 27 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRST 27 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 289
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.10 E-value=0.098 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEeeCCC---------CCChhHHHHHHhCC
Q 004698 74 VSVCGRA---------RQGKSFILNQLLGR 94 (736)
Q Consensus 74 Vsv~G~~---------rtGKS~LlN~l~~~ 94 (736)
|+|+|.. ++|||+|+|+|.+.
T Consensus 22 i~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 22 ISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred EEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 6778888 99999999999984
No 290
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=92.09 E-value=0.064 Score=59.35 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=24.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCCCcc
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGF 98 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF 98 (736)
.+..-|+|+|..++|||+|+|+|++...+|
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i 33 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFI 33 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence 355568999999999999999998653334
No 291
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.05 E-value=0.071 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSG 97 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~g 97 (736)
++-|+.|+|+.|+|||||||.|+|...|
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~ 30 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHG 30 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCC
Confidence 6789999999999999999999976533
No 292
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.02 E-value=4.3 Score=35.96 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r 579 (736)
++-...|+.++..+.-+.+.++..++............++.+|..++..-+.+...+..||.+.+.++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3446678888888888888888887776555444444555555555444444444444444444444433
No 293
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=91.96 E-value=0.18 Score=55.00 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-.-|+|+|...+|||+|+|+|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 345899999999999999999874
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.91 E-value=0.063 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 79999999999999999998764
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.88 E-value=0.19 Score=55.71 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHh
Q 004698 70 PIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+-.||.++|++++||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35789999999999999999987
No 296
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.88 E-value=0.066 Score=50.82 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+=.||+++|+.++|||||++.|.|..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344579999999999999999998753
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.87 E-value=0.059 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.++|||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7899999999999999999863
No 298
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.83 E-value=0.077 Score=57.21 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.++|||||+|.|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999864
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.81 E-value=0.08 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.++||||||+.|.|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.72 E-value=0.06 Score=52.65 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=24.8
Q ss_pred EEeeCCCCCChhHHHHHHhCCC-C--cccccCCCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS-S--GFQVASTHRP 106 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~-~--gF~~~~~~~~ 106 (736)
|.|+||.|+||++|++.|+... . +|.+++|+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 5589999999999999998653 2 3566666544
No 301
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.67 E-value=0.059 Score=56.87 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|+|-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 79999999999999999999864
No 302
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.67 E-value=3.1 Score=35.73 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698 546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 586 (736)
Q Consensus 546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~ 586 (736)
.-|+..|.++++.++.+..+.+.++.+++++......++.+
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45888888888888888888888888888876666655543
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.66 E-value=0.061 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=15.4
Q ss_pred EEEeeCCCCCChhHHHHHHh-CCC
Q 004698 73 VVSVCGRARQGKSFILNQLL-GRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~-~~~ 95 (736)
+|+|+||.++|||||++.|. |..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 79999999999999999999 764
No 304
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.66 E-value=0.27 Score=57.41 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+...|+|+|..++|||+|+|.|++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999953
No 305
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=91.65 E-value=0.13 Score=57.29 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=23.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGF 98 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF 98 (736)
+..-|+|+|....|||+|+|+|++...+|
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~ 34 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGI 34 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCc
Confidence 44568899999999999999998753333
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.63 E-value=0.067 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+|+|+||.++|||||++.|+|-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 368999999999999999998753
No 307
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.49 E-value=0.081 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999864
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.45 E-value=0.045 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|.|+|+.++|||||++.|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68889999999999999998654
No 309
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.43 E-value=0.15 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 79999999999999999999864
No 310
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.37 E-value=0.13 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+..+|+|+|++++||||+++.|.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
No 311
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.34 E-value=0.099 Score=54.86 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.3
Q ss_pred EEEEEeeCCCCCChhHHHHHHhC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
-.||+++|+.++||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45888999999999999999874
No 312
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.19 E-value=0.096 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++|||||||.|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999763
No 313
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.18 E-value=0.072 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++|||||++.|.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.18 E-value=0.12 Score=50.48 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+..+|+|+|+.++|||||++.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 44689999999999999999999864
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.10 E-value=0.12 Score=56.91 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=30.7
Q ss_pred eeeCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 54 FRMDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 54 l~l~~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+.+.++...+|.. +..+=.+|+|+||.++||||||+.|+|.
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4455655555543 2456678999999999999999999874
No 316
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.08 E-value=0.08 Score=59.92 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=29.8
Q ss_pred eCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 56 MDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 56 l~~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+.+++++.|.. +...- +|+|+|+.|||||||||.|+|.-
T Consensus 245 ~~~~~l~~l~~~v~~g~-~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKF-SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTC-CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCC-EEEEECCCCCCHHHHHHHHHhhC
Confidence 45788888754 33332 38999999999999999998753
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.04 E-value=0.11 Score=52.43 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHh
Q 004698 71 IGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
-.+|+|+|+.|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.99 E-value=0.081 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+++|+|+.++|||+|++.|+|
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.98 E-value=9 Score=42.40 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=4.3
Q ss_pred chhHHHHHHHHH
Q 004698 458 SIDNVVKVLDGL 469 (736)
Q Consensus 458 ~~~~~~~~~~~l 469 (736)
+...|...++.+
T Consensus 322 g~~eF~~Eve~L 333 (487)
T 3oja_A 322 GSETERLECERE 333 (487)
T ss_dssp ---CHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 344555544433
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.97 E-value=0.091 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|+|+|+.|+|||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999865
No 321
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.97 E-value=0.083 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQ 99 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~ 99 (736)
+|.|+|+.+|||||+.+.| ..-||.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L--~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL--KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH--HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH--HHCCCc
Confidence 6899999999999999999 433443
No 322
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.93 E-value=0.11 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+|+.|+||||||+.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 69999999999999999999864
No 323
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.93 E-value=0.15 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHh
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.+..||.|+|+.|+||||+...|+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999987
No 324
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.88 E-value=0.12 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||+|.|+|..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999864
No 325
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.87 E-value=0.083 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+-.+|+|+|+.++|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999999874
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.86 E-value=0.094 Score=56.53 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
|=.+|+|+||.|+||||||+.|+|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4458999999999999999999874
No 327
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.84 E-value=0.2 Score=55.42 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHh
Q 004698 70 PIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+-.||.++|++++||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999987
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.80 E-value=0.11 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.++||||||+.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.69 E-value=0.14 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|+|+|+.+|||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.61 E-value=0.12 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred CEEEEEeeCCCCCChhHHHHHHh
Q 004698 70 PIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
+-.+|+|+|+.|+|||||++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33479999999999999999998
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.60 E-value=0.11 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999864
No 332
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.55 E-value=6.4 Score=33.91 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 583 LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 662 (736)
Q Consensus 583 L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k 662 (736)
|.+.++.++.++..+...... +..++..|+..+..-..+...++.....+.+|++|+ .-
T Consensus 3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL----------Ta 61 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL----------TA 61 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
T ss_pred HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhh
Q 004698 663 AALEKAAIVQE---RTSKEMQQREDVLREEFSST 693 (736)
Q Consensus 663 alle~~~~~~e---~~~e~~~~~~~~l~~e~~~~ 693 (736)
+|.++|+..-. +.....+.+...|++++.+.
T Consensus 62 sLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 62 SLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.54 E-value=0.081 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+.+|+|+|+.++|||+|++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 558999999999999999999875
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.39 E-value=0.13 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+++|+||.++|||||++.|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.39 E-value=0.13 Score=55.87 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 78999999999999999999864
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.31 E-value=0.13 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.8
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
...||+|+|+.++|||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999998754
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.22 E-value=0.16 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+-.+|+|+|+.++|||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999864
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.21 E-value=0.12 Score=51.12 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.+|||||+++.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 339
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.02 E-value=1.4 Score=40.35 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698 660 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695 (736)
Q Consensus 660 e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~ 695 (736)
+.++.+++.+...+..+.++...++.++++++.++.
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777663
No 340
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.02 E-value=0.83 Score=41.84 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004698 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY----DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL 641 (736)
Q Consensus 566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y----ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~ 641 (736)
+..|..++..-..+....+.....+.+|+.++.... ..-...+|.....++.+...|+.+..+.+.++.....|+.
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLK 127 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444443 3334445666667777777777777777777666666665
Q ss_pred HHHH
Q 004698 642 SAQE 645 (736)
Q Consensus 642 ~~~~ 645 (736)
.++.
T Consensus 128 ~LK~ 131 (135)
T 2e7s_A 128 NLKK 131 (135)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.88 E-value=0.18 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.138 Sum_probs=23.0
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+=.+|.|+|+.++|||||++.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444689999999999999999998753
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.87 E-value=0.13 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-.+|.|+|+.++|||||++.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357999999999999999998764
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.68 E-value=0.12 Score=55.62 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 78999999999999999999864
No 344
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.67 E-value=0.22 Score=57.58 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.1
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+-.|+|+|+.|+|||+|||.|.|..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3459999999999999999999963
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.67 E-value=0.18 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+-.+|+|+|+.++|||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999998865
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.59 E-value=0.16 Score=48.97 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV 100 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~ 100 (736)
...+|+|+|+.+|||||+.+.|... |+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~ 35 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--GYPV 35 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--TCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--CCEE
Confidence 3457999999999999999999876 5543
No 347
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.55 E-value=9.1 Score=42.15 Aligned_cols=32 Identities=3% Similarity=0.131 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698 556 KKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (736)
Q Consensus 556 kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l 587 (736)
++++++++..+.+++.+-.+.......|..-|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 403 QQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 44444444445555555555555555544433
No 348
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.34 E-value=0.14 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.++||.|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998864
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.29 E-value=0.14 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.4
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-.||+|+|+.|+|||||++.|.|.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999863
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.16 E-value=0.15 Score=55.12 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+=.+|+|+|+.|+||||||+.|+|.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34468999999999999999999874
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.10 E-value=0.083 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|+|+|+.++|||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 352
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.08 E-value=7 Score=41.56 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 612 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661 (736)
Q Consensus 612 ~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ 661 (736)
.+.|..-.++|+.++..+..++.+--..++.++.-+.+.+.|.+.++...
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555666655566666666666666666665544
No 353
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.08 E-value=0.18 Score=57.40 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
-|++|+|+.|+||||||+.|.|.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999985
No 354
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.07 E-value=0.11 Score=55.93 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.|+||||||+.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.05 E-value=0.15 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+=.+|+|.|+.|+|||||++.|.|.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3358999999999999999999876
No 356
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.02 E-value=0.2 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998754
No 357
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.01 E-value=0.15 Score=49.52 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|+|+|+.++||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 358
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.01 E-value=6.1 Score=43.61 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (736)
Q Consensus 563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~ 624 (736)
.+....|+++++.++.....++++-..-..-+--+....+...++..+..++++.+|+.|..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544443333333333333333333333344444444433
No 359
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.00 E-value=3.3 Score=37.26 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 633 LAAAREQALSAQEEVEEWKRKYGVAV 658 (736)
Q Consensus 633 ~~~~~~q~~~~~~E~~e~~~ky~~~~ 658 (736)
+.++++.+..+..-+..+|.+|-.++
T Consensus 94 ~~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 94 LSEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555666666677776554
No 360
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.96 E-value=0.17 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+++|+||.++||||||+.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999999864
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.90 E-value=0.11 Score=49.88 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=24.1
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC--CCcccc
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR--SSGFQV 100 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~--~~gF~~ 100 (736)
.+.+|+|+|+.++|||+|++.|++. ..|+.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v 35 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 35 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCee
Confidence 3558999999999999999999864 234444
No 362
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.89 E-value=8.4 Score=32.99 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE-ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 637 (736)
Q Consensus 559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e-~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~ 637 (736)
|..+..+++.+--++..|+..=..|+.+++.++.. ... ...-|...|.+|+.++..+....+.+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~--------------~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSR--------------LGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444333321 111 233466677777776666666677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004698 638 EQALSAQEEVEEWKRK 653 (736)
Q Consensus 638 ~q~~~~~~E~~e~~~k 653 (736)
-+.++++.++.++|.|
T Consensus 77 ~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777888888777765
No 363
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=88.83 E-value=0.33 Score=59.72 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+..-|+|+|....|||+|+|+|.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 46677999999999999999999864
No 364
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.81 E-value=0.16 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.||+++|+.|+|||||++.|.|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 365
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.69 E-value=0.17 Score=49.55 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=29.9
Q ss_pred eeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 54 FRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 54 l~l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+.-+.+..+.+... ...+.+|+|+|..++|||+|+|.|++.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 44455555555432 245678999999999999999999864
No 366
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.41 E-value=8.6 Score=42.35 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698 583 LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (736)
Q Consensus 583 L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~ 624 (736)
...+-+++++..+.-+..|++.+.+-.++...|++..++.+.
T Consensus 46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~ 87 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPV 87 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666677776666665556666666555555
No 367
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.32 E-value=5.3 Score=33.24 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=16.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 673 ERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQ 713 (736)
Q Consensus 673 e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~ 713 (736)
+..+..++.+...+++++..+... +...+.||+.+++
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~----l~~a~~kLeeaek 76 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSES----LKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 333444444444444444433322 3555555655544
No 368
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.11 E-value=0.23 Score=56.54 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.|+||||||+.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 369
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.23 Score=57.37 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+||.|+||||||+.|.|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999985
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.04 E-value=0.2 Score=53.36 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.2
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+=.||+++|+.|+|||||++.|.|.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999864
No 371
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.89 E-value=6.2 Score=32.79 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E 646 (736)
....++..|+.|++.+|+.+..+..++..++..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444
No 372
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.64 E-value=16 Score=33.09 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698 523 IEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 590 (736)
Q Consensus 523 ~e~e~~~lk~~Le~~e~~~~e~~k---~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l 590 (736)
.+.++..++..+...+....+.+. ++....+++...+..-....++.+-.+..+..+...|...+..+
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444333332 33333333333333333333333444444444444444443333
No 373
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.42 E-value=0.26 Score=56.88 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.|+||||||+.|.|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 7999999999999999999985
No 374
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=87.36 E-value=2.7 Score=42.58 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004698 461 NVVKVLDGLISEY 473 (736)
Q Consensus 461 ~~~~~~~~ll~~Y 473 (736)
.+...+..++.+.
T Consensus 10 ~v~~~~~~Y~~q~ 22 (243)
T 2a01_A 10 RVKDLATVYVDVL 22 (243)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 375
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.35 E-value=0.3 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|.|+|+.+|||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 376
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=87.26 E-value=40 Score=37.33 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 525 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 604 (736)
Q Consensus 525 ~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~ 604 (736)
.....+.+.+....+.+...++.|+..-.+.+ .+..+....+.+...-...+..+...++..+.++.+-+..|...
T Consensus 136 ~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e----~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 211 (486)
T 3haj_A 136 DGFRKAQKPWAKKLKEVEAAKKAHHAACKEEK----LAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 211 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555544432 22111111111111112445566677777788888888888888
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 004698 605 LTKQKAMEDQVCSEIEVLKSRSTAAEAR 632 (736)
Q Consensus 605 ~~~~~~~~~~~~~~i~~L~~k~~~~E~~ 632 (736)
+...++....|...+..+=..++++|+.
T Consensus 212 v~~~n~~~~~y~~~~~~~~~~lQ~lEee 239 (486)
T 3haj_A 212 LKELDQGTPQYMENMEQVFEQCQQFEEK 239 (486)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777778888887766677777766
No 377
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.10 E-value=7.9 Score=32.23 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (736)
Q Consensus 567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee 603 (736)
..|+.|+..+-+.+..|...++.+|.+...+....++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777766666555544
No 378
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.00 E-value=0.21 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
...++|+|+.++|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999863
No 379
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.99 E-value=0.25 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.||+++|+.|+|||||++.|.|.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 48999999999999999999874
No 380
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.95 E-value=0.26 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.|+|||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.95 E-value=0.32 Score=46.97 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=22.7
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCccc
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQ 99 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~ 99 (736)
+|.|+|+.+|||||+.+.|.....|+.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~ 32 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANT 32 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCc
Confidence 689999999999999999987654443
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.93 E-value=0.26 Score=48.33 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
++.|+|+.++|||+|++.|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 383
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.81 E-value=0.3 Score=55.55 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++||||||+.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 384
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=86.69 E-value=9.6 Score=33.49 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------------------KRYDDAINDKKKLADDYTSRINNLQGENI 574 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------------------k~~e~~In~lkk~~e~~e~~~~~Le~k~~ 574 (736)
.+.++.++..+...+..+..++.+.+....+.. +..++.+..+.+..+.++.++..|+.++.
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777777777777766666665 25666777666666666666666655555
Q ss_pred HHHHHHHHHHHHHHH
Q 004698 575 SLREKSSSLSKTVDS 589 (736)
Q Consensus 575 sl~~r~~~L~~~le~ 589 (736)
.+..++..+...+..
T Consensus 95 ~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 95 KLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.44 E-value=0.32 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+||||||+.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 386
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.44 E-value=0.27 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+++|+|+.|+||||||+.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999999873
No 387
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.40 E-value=0.33 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+||||||+.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.35 E-value=0.27 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.||+|+|+.|+|||||++.|.|.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 48999999999999999999874
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.24 E-value=0.36 Score=47.37 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=29.5
Q ss_pred ceeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 53 KFRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 53 ~l~l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+.-+++..+.+... ..++.+|+|+|..++|||+|+|+|++.
T Consensus 18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444444432 245678999999999999999999864
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.17 E-value=0.31 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999864
No 391
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.09 E-value=0.32 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.09 E-value=0.36 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|+|+|+.+|||||+++.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 393
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.08 E-value=0.31 Score=56.06 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|+|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999864
No 394
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.04 E-value=0.24 Score=52.31 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeec-cccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS-APLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~-~p~~~~~~~g~~~~v~llDteG~ 138 (736)
+|.|+||+++|||+|...|+....|.-++......-+|+-+.. +|-+. ..+| +...|+|...+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~-E~~g--vphhlid~~~~ 68 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAE-EMDG--VPHHLIDIKDP 68 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHH-HHTT--CCEESSSCBCT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHH-HHcC--CCEEEeccCCh
Confidence 6889999999999999999866543322222222333433332 22211 1123 55677888754
No 395
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.00 E-value=0.32 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+|+|+|+.|+|||||++.|+|-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 379999999999999999999864
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.83 E-value=0.39 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|.|+|+.++||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.77 E-value=0.4 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.++||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999764
No 398
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.67 E-value=4.2 Score=36.58 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (736)
Q Consensus 587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~ 651 (736)
++.|+.++..++...+.....+ +..+.+|++++..+|..+...+.+.+.+..|.+.++
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~-------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES-------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443333 333444455555555566666666666666654443
No 399
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.65 E-value=0.37 Score=55.58 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
-+|+|+|+.|+||||||+.|.|-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999999864
No 400
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=85.58 E-value=0.81 Score=48.64 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=35.0
Q ss_pred EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~ 141 (736)
|.++|..++|||.|++++.+.. |.-....-..|-|+-.-. + +..+.+-+.||.|...+
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~--~~~~~~~~~~Tig~~~~~--v------~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNM--QPLDTLYLESTSNPSLEH--F------STLIDLAVMELPGQLNY 59 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCC--CSGGGTTCCCCCSCCCEE--E------CSSSCEEEEECCSCSSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCccceecCeeeeeeEE--E------ccEEEEEEEECCCchhc
Confidence 5688999999999999988653 211000112244443321 1 12367889999997543
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.55 E-value=0.24 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.++|||||++.|+|..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999999863
No 402
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.51 E-value=0.38 Score=45.68 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.++||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999753
No 403
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.39 E-value=0.3 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+||.|+|||||++.|+|-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 79999999999999999999864
No 404
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.18 E-value=13 Score=32.57 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E 646 (736)
.+..++..++.++..+++.+..+.++...+..+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444444444444443333
No 405
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.13 E-value=18 Score=39.99 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 004698 510 GSERSSLMLKYRSIEDNMK 528 (736)
Q Consensus 510 ~~e~~~L~~k~es~e~e~~ 528 (736)
+.....|...|.+...+..
T Consensus 338 HrNLV~L~gyC~s~~~~~~ 356 (487)
T 3oja_A 338 QREIDALKEQYRTVIDQVT 356 (487)
T ss_dssp HHHHHHHHHHTCCCCCHHH
T ss_pred ccchhhHHHHhcChHHHHH
Confidence 3345555555554444333
No 406
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=84.92 E-value=51 Score=36.29 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698 573 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643 (736)
Q Consensus 573 ~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~ 643 (736)
+..+..+...|..++++-...+..+...-++.+....-.++..+..++.|+++-..+.+.+..-+.++..+
T Consensus 128 v~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a 198 (450)
T 3r6n_A 128 IAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKEN 198 (450)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677776666677776666777666666667777777777776666666655555444443
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.76 E-value=0.34 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+++|+|+.++|||+|++.|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 408
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.74 E-value=0.36 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+|||||++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999864
No 409
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.67 E-value=7.5 Score=32.75 Aligned_cols=26 Identities=8% Similarity=0.322 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 581 SSLSKTVDSLKNEISDWKRKYDQVLT 606 (736)
Q Consensus 581 ~~L~~~le~lk~e~~e~~~~yee~~~ 606 (736)
..++.++..++.+.+...+.|++.++
T Consensus 38 ~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 38 AEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555444
No 410
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.67 E-value=8.9 Score=31.72 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD 596 (736)
Q Consensus 548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e 596 (736)
+=.+||+++-.+++++++..++|.++.+.-+.++.|.++|+.-..++.-
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence 3456777777778888888888888877777777777776655544433
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.63 E-value=0.47 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.+||||+|...|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999754
No 412
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.61 E-value=0.49 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|.++|+.+|||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.40 E-value=0.41 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
.+|+|+||.|+|||+|++.|.|..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378999999999999999999754
No 414
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=84.30 E-value=17 Score=34.03 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698 524 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 594 (736)
Q Consensus 524 e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~ 594 (736)
.++.+.+.+..+++...+.+|.++++.++.+.+.++..++.-+..++..+...+.++...+..++.++.-+
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vk 137 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVR 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888999999999999988777777665555555555555555444444444443333
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.29 E-value=0.23 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|+|+.+||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 416
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=84.28 E-value=13 Score=32.07 Aligned_cols=75 Identities=9% Similarity=0.145 Sum_probs=49.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------------------KRYDDAINDKKKLADDYTSRINNLQGENI 574 (736)
Q Consensus 513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------------------k~~e~~In~lkk~~e~~e~~~~~Le~k~~ 574 (736)
.+.++.++..+...+..+..++.+.+....+.. +..++.+..+.+..+.++.++..++.++.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777766666665 25667777666666766666666666666
Q ss_pred HHHHHHHHHHHHH
Q 004698 575 SLREKSSSLSKTV 587 (736)
Q Consensus 575 sl~~r~~~L~~~l 587 (736)
.+..++..+...+
T Consensus 90 ~~~~~l~~lk~~l 102 (107)
T 1fxk_A 90 RVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 417
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.27 E-value=0.52 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.+|.|+|+.+|||||+...|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 418
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.17 E-value=0.53 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|-|+|+.+|||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999864
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.10 E-value=0.43 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
++.|+|+.++|||+|+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 420
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.04 E-value=0.53 Score=45.64 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.3
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+..+|.|+|+.++||||+...|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3347899999999999999999754
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.96 E-value=0.54 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.++|+.++||||+++.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999764
No 422
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.96 E-value=0.52 Score=44.81 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|.|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.89 E-value=0.44 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
++.|+|+.++|||+|+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999873
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.87 E-value=0.54 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|.|+++||||++.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998653
No 425
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=83.76 E-value=8.2 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (736)
Q Consensus 568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye 602 (736)
++..|+..+..........+...+.|+.++++.++
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq 66 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQ 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777777776654
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.75 E-value=0.54 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|+|.|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.72 E-value=0.52 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+.+|+|+.++|||+|+..|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 428
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=83.60 E-value=18 Score=30.16 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 577 REKSSSLSKTVDSLKNEISDWKRKYDQVLT 606 (736)
Q Consensus 577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~ 606 (736)
...+..|+.++..++.+.+...+.|++.++
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555554
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.56 E-value=0.57 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|.|+.+|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 430
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.52 E-value=0.52 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.++||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998643
No 431
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.36 E-value=0.18 Score=54.80 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.3
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+++|+|+.|+|||+||+.|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998764
No 432
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.34 E-value=0.54 Score=45.00 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 433
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=83.00 E-value=1.1 Score=46.98 Aligned_cols=15 Identities=0% Similarity=-0.181 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHHHH
Q 004698 458 SIDNVVKVLDGLISE 472 (736)
Q Consensus 458 ~~~~~~~~~~~ll~~ 472 (736)
..+.+...|..++..
T Consensus 33 ~~e~v~~~fwdY~~~ 47 (307)
T 2l7b_A 33 RWELALGRFWDYLRW 47 (307)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555555555554
No 434
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=82.99 E-value=26 Score=31.48 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698 500 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (736)
Q Consensus 500 ~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r 579 (736)
++-++-... ++++..||+...+++...+.....|...-..+..+ + -+| +++..+++....--.=++++++.
T Consensus 50 QlqKRn~~H-QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQ--S--lDi----RKLrELEADLKEKDsMVe~LT~T 120 (167)
T 4gkw_A 50 QLQKRNVAH-QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQ--S--LDM----RKLGELEADLKEKDSMVESLTET 120 (167)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHH----HHTHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHh--h--hhH----HHHHHHHhHHhhhhHHHHHHHHH
Confidence 344555544 88899999888888888887777775532221111 1 112 22344444444445557788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 580 SSSLSKTVDSLKNEISDWKRKYDQV 604 (736)
Q Consensus 580 ~~~L~~~le~lk~e~~e~~~~yee~ 604 (736)
+..|++.|+..+-+..++--.|+..
T Consensus 121 iG~LrKELEdEklK~~E~MdSFE~L 145 (167)
T 4gkw_A 121 IGILRKELENEKLKAAENMDSFEKL 145 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888877777653
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.98 E-value=0.65 Score=45.28 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..-.+|+|+|..+|||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998753
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.97 E-value=0.45 Score=50.98 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 58 PEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 58 ~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..|++-+..+. +- +++|+|+.++|||+||+.|.|..
T Consensus 59 ~~ald~ll~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQ--RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 45666663332 22 68999999999999999999864
No 437
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.97 E-value=8 Score=32.08 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=12.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 620 EVLKSRSTAAEARLAAAREQALSAQEE 646 (736)
Q Consensus 620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E 646 (736)
+++..|+.++|.++..++++++.++..
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555554444444444444
No 438
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.91 E-value=0.58 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.+|||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998743
No 439
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.69 E-value=0.74 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCC
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..+|.|+|+.+|||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 440
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.65 E-value=0.61 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
...+|+|+|+.+|||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.59 E-value=0.48 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.7
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
++.|+|+.++|||+|+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 442
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.49 E-value=0.56 Score=43.84 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 443
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.37 E-value=0.62 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.+|||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 444
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.34 E-value=0.5 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
|-+ |.++||.|+|||+|++.|.|.
T Consensus 44 ~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 44 PAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CCe-EEEECCCCCcHHHHHHHHHHH
Confidence 344 899999999999999999875
No 445
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.34 E-value=0.57 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+++|||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 446
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.30 E-value=0.6 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.22 E-value=0.49 Score=52.34 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698 58 PEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 58 ~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
..+++-+..+.. =-+++|+|+.++|||+||+.|.|..
T Consensus 145 ~~vld~vl~i~~-Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 145 VRAINALLTVGR-GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CHHHHHHSCCBT-TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceEEeeeEEecC-CCEEEEECCCCCCHHHHHHHHhccc
Confidence 346666633321 1268999999999999999999864
No 448
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.17 E-value=0.45 Score=57.64 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~ 95 (736)
+|+|+|+.|+||||||+.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 449
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.15 E-value=0.69 Score=46.71 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|+|.|+.++||||+.+.|..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 450
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.09 E-value=0.87 Score=44.57 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=28.4
Q ss_pred eCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 56 MDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 56 l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+.++++.|... ..+-..|-|.|+.|+|||+|+..+...
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356777777643 223345778999999999999998753
No 451
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.07 E-value=0.53 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEeeCCCCCChhHHHHHHhCC
Q 004698 74 VSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~ 94 (736)
|.++||.|+|||+|++.|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999875
No 452
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.04 E-value=38 Score=37.31 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=30.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698 519 KYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLAD-DYTSRINNLQGENISLREKSSSLSKTV 587 (736)
Q Consensus 519 k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e-~~e~~~~~Le~k~~sl~~r~~~L~~~l 587 (736)
.+..+....+..+.++.+.+..+.++...++.....++..++ .+.+.+..|+..++++..+++.|+..+
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555444444444433332 233444444444444444444444443
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.73 E-value=0.53 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+||.++|||+|...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999754
No 454
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.73 E-value=0.75 Score=43.84 Aligned_cols=25 Identities=28% Similarity=0.184 Sum_probs=21.4
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+-.+|.++|+.++||||+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998754
No 455
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.65 E-value=0.76 Score=42.76 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|.|.|+.+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 456
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.50 E-value=0.68 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
No 457
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.44 E-value=17 Score=33.86 Aligned_cols=46 Identities=7% Similarity=-0.015 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698 614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659 (736)
Q Consensus 614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~ 659 (736)
.++++++.|+.++..+++.+..-.+..+..+.|..-++--++.+..
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333344444443333333333333
No 458
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.41 E-value=0.15 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+++|+||.++|||+||+.|.|-
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999998763
No 459
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.28 E-value=0.76 Score=44.81 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|.|+|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 460
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.19 E-value=0.79 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.++|+.++||||+...|...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999643
No 461
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.00 E-value=12 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698 611 MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (736)
Q Consensus 611 ~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~ 647 (736)
.++.+-++|.+|+-|+..+|..-...++.+.+++.|+
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El 56 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEV 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3567889999999999999999999999999999886
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.90 E-value=0.86 Score=55.24 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+++|+|+.|+||||||+.|.|
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999994
No 463
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.74 E-value=0.83 Score=43.64 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999765
No 464
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.68 E-value=0.54 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 69 ~~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+...+.++||.|+|||+|++.|.|.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45566889999999999999999864
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.65 E-value=0.96 Score=42.03 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.+..|+|+.++|||+||..|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999974
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.57 E-value=0.87 Score=42.52 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=20.5
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+-+|.|.|..+|||||+...|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998643
No 467
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.54 E-value=0.71 Score=43.67 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|.|+|+.++||||+.+.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 577999999999999999873
No 468
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.49 E-value=60 Score=34.55 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698 541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587 (736)
Q Consensus 541 ~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l 587 (736)
..+|...++..|..+++.++.--..+..|+..+..+.-+++.|+..+
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555544444433355555555555555555555554
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.45 E-value=0.57 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.||+|.|+.+|||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 470
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.41 E-value=0.67 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+++|||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998643
No 471
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=80.31 E-value=0.88 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEEeeCCCCCChhHHHHHHh
Q 004698 71 IGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
..+|+|+|+.+|||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 472
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.94 E-value=0.92 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.+|||||+.+.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998643
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.76 E-value=0.95 Score=48.24 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=36.5
Q ss_pred EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~ 138 (736)
+|.|+||+++|||+|...|+...+|-=+..-....-+|+-+-..........| +...|+|...+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g--vphhlidi~~~ 105 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG--VPHHLLGEVDP 105 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT--CCEESSSCBCG
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC--CCEeeccccCc
Confidence 78899999999999999999775432222222223445444332211111222 45566676543
No 474
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.69 E-value=0.71 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEeeCCCCCChhHHHHHHhCCC
Q 004698 74 VSVCGRARQGKSFILNQLLGRS 95 (736)
Q Consensus 74 Vsv~G~~rtGKS~LlN~l~~~~ 95 (736)
|.++|+.+||||+|++.|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8899999999999999998753
No 475
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.58 E-value=0.87 Score=45.01 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.||||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 476
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.57 E-value=0.69 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.++.|+|+.++|||+|++.|++.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 477
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.53 E-value=0.75 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=16.1
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998643
No 478
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.22 E-value=0.98 Score=44.07 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|.|+|+.+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999644
No 479
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.20 E-value=0.73 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCChhHHHHHHhC
Q 004698 72 GVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
.||+++|+.|+||||++..|.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=79.13 E-value=1 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 481
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.71 E-value=1 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.0
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+-.+|+|+|+.++|||++.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999875
No 482
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=78.55 E-value=0.74 Score=53.67 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.4
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|+|+||.++|||||+|.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999999765
No 483
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.48 E-value=24 Score=30.88 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004698 577 REKSSSLSKTVDSLK 591 (736)
Q Consensus 577 ~~r~~~L~~~le~lk 591 (736)
..++..|..++..++
T Consensus 89 ~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 333333333333333
No 484
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.43 E-value=0.97 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.9
Q ss_pred CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698 70 PIGVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 70 ~v~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+-.||+|+|++|+||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4468999999999999999998853
No 485
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.29 E-value=1.1 Score=43.78 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.++||||+++.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.17 E-value=1.1 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.4
Q ss_pred EEEEeeCCCCCChhHHHHHHh
Q 004698 72 GVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~ 92 (736)
.++.|+|+.|+|||+|++.|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356699999999999999975
No 487
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.04 E-value=36 Score=30.04 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698 571 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 646 (736)
Q Consensus 571 ~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E 646 (736)
.+.+.+......|.++|+.+..+..++... ++.+ .++.++++..|+.++.++|..+.+++..-..++++
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~----w~~k---~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF----IKQS---SEDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777776666555 3333 66778888999998888887776666555555554
No 488
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=77.73 E-value=1.8 Score=49.12 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=55.0
Q ss_pred EEEEEeeCCCCCChhHHHHHHhCCCC--------------cccccCC-CCCccceEEeeccccccccCCCCceEEEEeec
Q 004698 71 IGVVSVCGRARQGKSFILNQLLGRSS--------------GFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDS 135 (736)
Q Consensus 71 v~vVsv~G~~rtGKS~LlN~l~~~~~--------------gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDt 135 (736)
+-=|+|+|--.+|||||.-+||-... +-.+... ..-.-+||=|-+.+.... ..++.+=||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~---~~~~~iNlIDT 107 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP---YRDRVVNLLDT 107 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE---ETTEEEEEECC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE---ECCEEEEEEeC
Confidence 44488899999999999999972211 0011110 011235666665544332 23477889999
Q ss_pred CCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698 136 EGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (736)
Q Consensus 136 eG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L 178 (736)
||--++. .+ -.-+|.++=+-++|......+..+....+
T Consensus 108 PGHvDF~----~E-v~raL~~~DgAvlVvda~~GV~~qT~~v~ 145 (548)
T 3vqt_A 108 PGHQDFS----ED-TYRVLTAVDSALVVIDAAKGVEAQTRKLM 145 (548)
T ss_dssp CCGGGCS----HH-HHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred CCcHHHH----HH-HHHHHHhcCceEEEeecCCCcccccHHHH
Confidence 9964332 22 23366676677788887777766544433
No 489
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.68 E-value=1.2 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|+|.|+.|+||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 490
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.62 E-value=37 Score=29.96 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698 562 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624 (736)
Q Consensus 562 ~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~ 624 (736)
......+...++..|..+....+..|..+++--...+....+.+......-+++..++..|+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666666666666666666666666666666666666665555555555554444
No 491
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=77.16 E-value=1.2 Score=41.55 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.|-|.|+.|+|||+|+..++..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999998754
No 492
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.11 E-value=0.84 Score=46.49 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChhHHHHHHhCC
Q 004698 73 VVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
+|.|+|+.++||||+++.|.+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 493
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.10 E-value=1.8 Score=41.64 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
..|-+.|+.|||||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999998753
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.07 E-value=1.2 Score=47.58 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEEeeCCCCCChhHHHHHHhCC
Q 004698 72 GVVSVCGRARQGKSFILNQLLGR 94 (736)
Q Consensus 72 ~vVsv~G~~rtGKS~LlN~l~~~ 94 (736)
.+|.|+|+.+||||+|...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37999999999999999998754
No 495
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.04 E-value=1.3 Score=43.53 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
+|.++|+.+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
No 496
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.67 E-value=0.77 Score=50.84 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHh
Q 004698 25 SSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 25 ~~~~~~~~~~~m~~~~~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
++|--|.++.+...+.+|+.+-..++ ++-..-..++..|..-+. ++-|.|+.|||||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~p~~~~~Ln~-~Q~~av~~~~~~i~~~~~---~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 3 SSHHHHHHSSGLVPRGSHMTFDDLTE-GQKNAFNIVMKAIKEKKH---HVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp ------------------CCSSCCCH-HHHHHHHHHHHHHHSSSC---EEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCCccCCCccccCCCccccCCH-HHHHHHHHHHHHHhcCCC---EEEEEeCCCCCHHHHHHHHH
No 497
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=76.58 E-value=1.2 Score=47.66 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCEEEEEeeCCCCCChhHHHHHHh
Q 004698 68 KEPIGVVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 68 ~~~v~vVsv~G~~rtGKS~LlN~l~ 92 (736)
..++.+|+|.|+.|+|||+|++.++
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHH
No 498
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=76.40 E-value=1.2 Score=43.94 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHHh
Q 004698 73 VVSVCGRARQGKSFILNQLL 92 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~ 92 (736)
++.|+|+.++|||+|+.+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
No 499
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.34 E-value=1.1 Score=56.28 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEeeCCCCCChhHHHHHHhC
Q 004698 73 VVSVCGRARQGKSFILNQLLG 93 (736)
Q Consensus 73 vVsv~G~~rtGKS~LlN~l~~ 93 (736)
+|+|+|+.|+|||||++.|+|
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 500
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.33 E-value=23 Score=28.77 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698 621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 696 (736)
Q Consensus 621 ~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e 696 (736)
++..|+.++|.++..++++++.++..+++=+++-+.+..+.|-+++..-.-+- ++-.+|..+++++.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~--------eL~elrq~LakL~~~ 71 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIF--------ELTELRDNLAKLLEC 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHHhccC
Done!