Query 004699
Match_columns 735
No_of_seqs 230 out of 1049
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 11:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 6E-126 1E-130 1128.4 72.8 704 19-726 2-706 (900)
2 KOG1041 Translation initiation 100.0 1.1E-94 2.4E-99 852.9 55.9 615 48-727 42-676 (876)
3 KOG1042 Germ-line stem cell di 100.0 1.9E-89 4.1E-94 735.4 35.2 561 56-728 87-673 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1.1E-47 2.3E-52 427.5 24.2 255 448-727 1-268 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.3E-46 2.7E-51 422.8 27.2 284 417-728 3-297 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.4E-37 3E-42 343.5 22.6 231 461-727 2-240 (393)
7 PF02171 Piwi: Piwi domain; I 99.9 4.8E-24 1E-28 228.4 11.4 139 573-727 1-145 (302)
8 PF02170 PAZ: PAZ domain; Int 99.9 1.3E-23 2.8E-28 197.7 10.2 129 286-426 1-134 (135)
9 cd02845 PAZ_piwi_like PAZ doma 99.8 4.3E-20 9.3E-25 167.9 7.9 107 286-405 2-116 (117)
10 cd02846 PAZ_argonaute_like PAZ 99.8 2.1E-19 4.5E-24 164.1 11.7 107 286-403 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 1.5E-19 3.2E-24 164.9 10.2 106 285-403 1-115 (115)
12 cd04659 Piwi_piwi-like_ProArk 99.7 5.8E-17 1.3E-21 180.4 12.8 147 555-727 95-257 (404)
13 PF08699 DUF1785: Domain of un 99.5 6.2E-15 1.4E-19 113.4 4.6 51 234-285 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.5 1.9E-14 4.2E-19 133.7 5.8 84 309-404 27-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.8 6.4E-09 1.4E-13 93.4 5.4 65 310-388 38-106 (122)
16 COG1431 Argonaute homolog, imp 93.0 0.43 9.2E-06 53.8 9.0 171 468-662 306-488 (685)
17 PF00763 THF_DHG_CYH: Tetrahyd 56.9 20 0.00043 32.7 4.9 70 555-625 15-85 (117)
18 PRK14185 bifunctional 5,10-met 50.2 36 0.00078 36.3 6.2 69 557-625 18-87 (293)
19 KOG1924 RhoA GTPase effector D 47.4 32 0.00069 40.7 5.5 19 359-377 859-881 (1102)
20 PRK14184 bifunctional 5,10-met 45.5 56 0.0012 34.7 6.7 76 556-631 17-95 (286)
21 PRK14171 bifunctional 5,10-met 45.3 61 0.0013 34.5 7.0 66 560-625 22-88 (288)
22 PRK14187 bifunctional 5,10-met 44.2 65 0.0014 34.4 7.0 66 560-625 22-88 (294)
23 PRK14176 bifunctional 5,10-met 42.4 78 0.0017 33.7 7.2 66 560-625 28-94 (287)
24 PRK10792 bifunctional 5,10-met 41.8 60 0.0013 34.5 6.3 70 556-625 19-89 (285)
25 PRK14186 bifunctional 5,10-met 41.6 67 0.0015 34.3 6.6 72 559-630 21-95 (297)
26 PLN02897 tetrahydrofolate dehy 41.2 65 0.0014 35.1 6.5 64 561-624 77-141 (345)
27 PRK14183 bifunctional 5,10-met 41.1 68 0.0015 34.0 6.5 57 569-625 30-87 (281)
28 PRK14188 bifunctional 5,10-met 41.1 72 0.0016 34.1 6.8 69 557-625 19-88 (296)
29 PRK14192 bifunctional 5,10-met 40.4 79 0.0017 33.6 7.0 76 558-633 21-99 (283)
30 PLN02516 methylenetetrahydrofo 40.0 81 0.0018 33.7 6.9 66 560-625 29-95 (299)
31 PLN02616 tetrahydrofolate dehy 39.8 77 0.0017 34.8 6.8 66 559-624 92-158 (364)
32 PRK14177 bifunctional 5,10-met 39.8 77 0.0017 33.7 6.7 73 559-631 22-97 (284)
33 PRK14174 bifunctional 5,10-met 39.1 77 0.0017 33.9 6.6 67 559-625 20-87 (295)
34 PRK14168 bifunctional 5,10-met 38.3 74 0.0016 34.0 6.3 70 556-625 19-89 (297)
35 PRK14179 bifunctional 5,10-met 38.2 84 0.0018 33.4 6.7 67 559-625 21-88 (284)
36 PRK14180 bifunctional 5,10-met 36.8 85 0.0018 33.3 6.4 67 559-625 20-87 (282)
37 PRK14169 bifunctional 5,10-met 36.6 87 0.0019 33.2 6.5 66 558-624 19-85 (282)
38 PRK14166 bifunctional 5,10-met 35.9 85 0.0018 33.3 6.3 64 560-624 21-85 (282)
39 PRK14190 bifunctional 5,10-met 35.0 91 0.002 33.1 6.3 66 559-625 22-88 (284)
40 PRK14193 bifunctional 5,10-met 34.5 94 0.002 33.0 6.3 56 570-625 32-88 (284)
41 PRK14172 bifunctional 5,10-met 34.2 99 0.0021 32.7 6.4 69 557-625 19-88 (278)
42 PRK14194 bifunctional 5,10-met 33.9 1E+02 0.0022 33.1 6.5 55 570-624 33-88 (301)
43 PRK14191 bifunctional 5,10-met 33.2 1.1E+02 0.0024 32.5 6.6 66 560-625 21-87 (285)
44 cd06559 Endonuclease_V Endonuc 32.5 1.2E+02 0.0026 30.7 6.5 53 646-702 23-75 (208)
45 KOG2488 Acetyltransferase (GNA 31.9 80 0.0017 31.3 4.8 42 69-114 108-149 (202)
46 KOG1924 RhoA GTPase effector D 29.7 92 0.002 37.2 5.6 26 50-76 624-649 (1102)
47 PRK14170 bifunctional 5,10-met 29.2 1.3E+02 0.0027 32.1 6.2 56 569-624 30-86 (284)
48 PRK14167 bifunctional 5,10-met 29.0 1.3E+02 0.0028 32.2 6.3 57 569-625 30-87 (297)
49 PRK14173 bifunctional 5,10-met 27.4 1.4E+02 0.0031 31.7 6.3 57 569-625 28-85 (287)
50 PRK14189 bifunctional 5,10-met 26.6 1.7E+02 0.0037 31.1 6.7 55 570-624 32-87 (285)
51 PRK14182 bifunctional 5,10-met 26.0 1.5E+02 0.0033 31.4 6.1 55 570-624 30-85 (282)
52 COG0190 FolD 5,10-methylene-te 25.4 1.5E+02 0.0033 31.3 5.9 66 559-624 19-85 (283)
53 PRK14181 bifunctional 5,10-met 25.3 1.7E+02 0.0036 31.2 6.3 56 569-624 25-81 (287)
54 PRK14175 bifunctional 5,10-met 25.2 1.6E+02 0.0034 31.4 6.1 55 570-624 32-87 (286)
55 COG5178 PRP8 U5 snRNP spliceos 25.0 60 0.0013 40.2 3.2 31 15-57 2-32 (2365)
56 PRK14178 bifunctional 5,10-met 24.0 2.1E+02 0.0045 30.4 6.7 57 569-625 25-82 (279)
57 KOG4327 mRNA splicing protein 20.7 59 0.0013 32.1 1.7 20 18-38 166-185 (218)
58 KOG3123 Diphthine synthase [Tr 20.3 1.2E+02 0.0025 30.5 3.6 35 582-618 142-176 (272)
59 PF08459 UvrC_HhH_N: UvrC Heli 20.1 2.2E+02 0.0048 27.3 5.5 64 646-725 9-72 (155)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=6.1e-126 Score=1128.40 Aligned_cols=704 Identities=81% Similarity=1.296 Sum_probs=616.0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCC
Q 004699 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (735)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~ 98 (735)
+++||+||.+|+++++...+..+ ....+.+.+++|||||+.|++|.|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988876322 22455668899999999999999999999999865678899999999876556777
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCeeecCCCceeecCCCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccC
Q 004699 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (735)
Q Consensus 99 ~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (735)
+++++++|++++++++...+.+..+||||+++|||+++|+.+..+|.|++.++...++..+++|+++++|++++.+|.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78899999999998876667677899999999999999998777888888754333323456677777777777666666
Q ss_pred CCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccccCCcEEEee
Q 004699 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (735)
Q Consensus 179 ~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~ 258 (735)
..+.+.|+|+|+++++|++++|.++|.|....+..+++|+||+|||+.++..++..+||+||.++.....++++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77889999999999999999999999998777889999999999999998878889999999876555567899999999
Q ss_pred cceEEEEeeCCeeEEeeecceeeeecCCcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccc
Q 004699 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (735)
Q Consensus 259 Gf~~Svr~~~~gl~LniDvs~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~ 338 (735)
||++|||+++++|+||||+++++|+++++|+|+|.++.+.++....+|.++.++|+|++|.++|++++|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999876655544456788999999999999999999999999999999
Q ss_pred cceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCC-CCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHH
Q 004699 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR 417 (735)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p-~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~ 417 (735)
+.+|.++++++. + .++.+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+
T Consensus 321 ~~~F~~~~~~~~-~-~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~ 397 (900)
T PLN03202 321 EQTFSLKQRNGN-G-NEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR 397 (900)
T ss_pred ceEEEcccCCcc-c-ccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence 999987643210 0 112245899999999999999999 6 99999999988999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCcccCCCCCccccCCceee
Q 004699 418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497 (735)
Q Consensus 418 ~~mi~~s~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn~~~~kf~ 497 (735)
++|+++|+++|.+|.+.|.++++.++++.+++|++|||+|+++|++|+||||++|+|.||++..+.|.+|+||+++++|+
T Consensus 398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~ 477 (900)
T PLN03202 398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477 (900)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence 99999999999999999999999999988999999999999999999999999999999988767788999999999999
Q ss_pred CCcccceEEEEEeCCcccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEE
Q 004699 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL 577 (735)
Q Consensus 498 ~p~~i~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~I 577 (735)
+|+.+++|+|++|.++++++.|++.|.+.|+.+||.+.+|..+...++++......++++.+++++++.++..++|||||
T Consensus 478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI 557 (900)
T PLN03202 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI 557 (900)
T ss_pred CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999988767899999999999999999999886554444433333445789999999998876679999999
Q ss_pred cCCCCCCCchhhhhhhcccccCceeeEeecccCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeec
Q 004699 578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS 657 (735)
Q Consensus 578 lp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVs 657 (735)
||+++++++|+.||++||+++||+||||..++.++||++|||||||+||||+||.|..+....+|++.+.+|||||+||+
T Consensus 558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt 637 (900)
T PLN03202 558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS 637 (900)
T ss_pred EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence 99745789999999999999999999998878899999999999999999999999866545688888889999999999
Q ss_pred cCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccC
Q 004699 658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWE 726 (735)
Q Consensus 658 Hp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~ 726 (735)
||+|++.+.|||||+|||+|++.+++|++.+++|.+++|+|++|.....+..+.+|+.|+|+.|+++|+
T Consensus 638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~ 706 (900)
T PLN03202 638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSG 706 (900)
T ss_pred cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcC
Confidence 999986557999999999998679999999999999999999997655555567899999999999775
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-94 Score=852.89 Aligned_cols=615 Identities=38% Similarity=0.578 Sum_probs=527.0
Q ss_pred cccccCCCCCCCCCCEEEEEeeEEEEEecCCCce-EEEEEEEEeeCCCCCCCCCcchH-HHHHHHHHHH-hhhcCCCCee
Q 004699 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGH-FYHYSVSVSYEDGRPVDGKGAGR-KVIDRVQETY-NAELDGKDFA 124 (735)
Q Consensus 48 ~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~~~-~y~Y~V~i~~~~~~~v~~k~~~r-~ii~~l~~~~-~~~~~~~~~~ 124 (735)
....+.|||.|+.|+.+.|.+|||.+.++.++.. ++||+|.+.. +..++...+ .+++.+.... ...+.+..++
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCccc
Confidence 4577889999999999999999999988766666 9999999954 444455553 4555444333 2335566777
Q ss_pred ecCCCceeecCCCCC--CceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHH
Q 004699 125 YDGEKSLFTVGPLPR--NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIAN 202 (735)
Q Consensus 125 yDG~~~l~s~~~L~~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~ 202 (735)
|||+++|||..+|+. ....|.+..+.. ...|+++|++.+.+.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999888884 333454443321 112999999999999999998
Q ss_pred HHcCCCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeee
Q 004699 203 ALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 282 (735)
Q Consensus 203 ~l~g~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F 282 (735)
++.+.......+++|++++++++.+...++..+|++||.........+++|.|+|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 98888777889999999999999999888999999999974333345899999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHhcCCCC-CCchhHH-HHHHHhcCcEEEEEec--CceEEEeccCccccccceeecccCCCCCCCCCccc
Q 004699 283 IQPGPVVDFLIANQNVRD-PFSIDWA-KAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (735)
Q Consensus 283 ~~~~~l~d~l~~~~~~~~-~~~~~~~-~~~~~Lkgl~V~t~~~--nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (735)
|++.+|.+++.+....++ ....++. .++++||||+|.++|+ +|.|+|.+++..++.+++|++++.+ +
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~---------~ 318 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK---------G 318 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC---------c
Confidence 999999999998765542 2222222 3899999999999994 4889999999999999999987531 3
Q ss_pred eeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccC-CCCHHHHHHHHHHHhcChHHHHHHHHH
Q 004699 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK-ALTNLQRASLVEKSRQKPQERMSVLSN 437 (735)
Q Consensus 359 ~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~-~Ls~~q~~~mi~~s~~~P~eR~~~i~~ 437 (735)
.++||+|||+++||++|+| |+||||++|..++.+|||+|||.|++||||++ +|++.|+++|++.+++.|++|++.|.+
T Consensus 319 ~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~ 397 (876)
T KOG1041|consen 319 REITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKK 397 (876)
T ss_pred eEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCC-cccCCCCCccccCCceeeCCcccceEEEEEeCCcccH
Q 004699 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDI 516 (735)
Q Consensus 438 ~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~-~~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~~~~ 516 (735)
+++..++..+++|++|||.|.++|+.|+||+|+||.|.|+++ ....|.+|.|++++++|+.|+.+..|+|++|...++.
T Consensus 398 ~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~ 477 (876)
T KOG1041|consen 398 VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETL 477 (876)
T ss_pred HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccc
Confidence 999998888999999999999999999999999999999998 3567889999999999999999999999999887533
Q ss_pred --HHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCC--CCCeEEEEEcCCCCCCCchhhhhh
Q 004699 517 --RSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP--GAPQFLLCLLPERKNSDLYGPWKR 592 (735)
Q Consensus 517 --~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~--~~~~~vl~Ilp~~k~~~~Y~~iK~ 592 (735)
+.|++.|++.|+..||.|..|. .+ . ..+.+++.++..++...+ ..+++++||+++ ++.++|+.||+
T Consensus 478 ~~~~f~~~L~~~c~~~Gm~i~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~ 547 (876)
T KOG1041|consen 478 RQKQFVDELIKICKDKGMEIKRPR-KW-A-------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKY 547 (876)
T ss_pred cHHHHHHHHHHHHHHcCccccccc-cc-C-------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHH
Confidence 6899999999999999996632 21 1 123577788887776543 568999999999 88999999999
Q ss_pred hcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCC--CC
Q 004699 593 KNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD--IP 667 (735)
Q Consensus 593 ~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~--~p 667 (735)
+++...||+|||+..+ +..+||++||+||||+||||+|+.+..+.+..+| ....||||||+||+||+++... .|
T Consensus 548 ~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~P 626 (876)
T KOG1041|consen 548 IEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNP 626 (876)
T ss_pred HHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCc
Confidence 9999999999999985 4569999999999999999999998876544444 4578999999999999998765 59
Q ss_pred eEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCc
Q 004699 668 SIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEV 727 (735)
Q Consensus 668 SiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~ 727 (735)
||||||||+|| +.++|.+.+++|++++|+|+++. +|++|+|..|+++++.
T Consensus 627 Siagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~~---------~~~~~~l~~f~~~t~~ 676 (876)
T KOG1041|consen 627 SIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDLG---------EMIRELLRSFRKSTRK 676 (876)
T ss_pred cEEEEEecccc-cchhhcceEEEecCChhhhcchH---------HHHHHHHHHHHHhccC
Confidence 99999999999 99999999999999999999944 5999999999999984
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-89 Score=735.35 Aligned_cols=561 Identities=22% Similarity=0.367 Sum_probs=491.4
Q ss_pred CCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeecCCCceeecC
Q 004699 56 GLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVG 135 (735)
Q Consensus 56 ~~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~l~s~~ 135 (735)
..|+.|.+|+|.||||++.. .+++.||||+|+| .|.++++.++++++..+. ++.|+.++|||. .||++.
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h~-----~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNHT-----DLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHhH-----hhhccceeecce-eehhhH
Confidence 46999999999999999876 5799999999999 678999999999988654 455889999999 999999
Q ss_pred CCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHH
Q 004699 136 PLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215 (735)
Q Consensus 136 ~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~ 215 (735)
++.++..+.. ++ +.++..++|+|+++++++. .++++
T Consensus 156 k~eq~~tel~-------~k------------------------s~~ge~i~I~ik~~~~~~~-------------t~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTELV-------SK------------------------SRDGELIKITIKLTNELPS-------------TDPQC 191 (845)
T ss_pred HHhhhhheee-------cc------------------------cCCCceEEEEEEEeccccC-------------CChhH
Confidence 9987643321 10 2357789999999999987 46789
Q ss_pred HHHHHHHHhcccccccceecccccccCCCCCcccc-CCcEEEeecceEEEEeeCCeeEEeeecceeeeecCCcHHHHHHH
Q 004699 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADV-GGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (735)
Q Consensus 216 i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l-~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~~l~d~l~~ 294 (735)
+|+||+|||..+..++..++||+||++.... +| .+.+++|+||.+|||..+..++|+.|++|++ .|..||+|+|.+
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i--~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~ 268 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKI--EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRS 268 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCccc--ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHH
Confidence 9999999999998888999999999987653 44 5799999999999999999999999999999 799999999998
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcc
Q 004699 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID 374 (735)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~ 374 (735)
+++. + +...+++++++-|+.|.|.||||+|+|++++|..++..+|..++ .+||+.|||+++|||+
T Consensus 269 ~~~~--~-~~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d------------geIs~veYyk~qYni~ 333 (845)
T KOG1042|consen 269 CQHN--T-QRFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD------------GEISFVEYYKKQYNIE 333 (845)
T ss_pred HhhC--H-HHHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC------------ceeeHhHHHHHhcCeE
Confidence 7752 2 22467899999999999999999999999999999999998664 3899999999999999
Q ss_pred cccCCCCCeEecCC--------CCCCccccccceeEcCCCcccCCCCHHHHH------HHHHHHhcChHHHHHHHHHHHH
Q 004699 375 LRYSGDLPCINVGK--------PKRPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKPQERMSVLSNALK 440 (735)
Q Consensus 375 L~~~p~lP~l~vg~--------~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~------~mi~~s~~~P~eR~~~i~~~~~ 440 (735)
|++ -+||+|.... ..+..++.||||+++| |++++|+ +|.++++.+|++|...+..+..
T Consensus 334 I~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~ 405 (845)
T KOG1042|consen 334 ITD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLID 405 (845)
T ss_pred Eee-CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999 9999998632 2346899999999998 7899887 6899999999999999999998
Q ss_pred hcCC--CCchhhhccCceecCcceeeeeeecCCCeeeeCCCcc-cCCCCCccc--cCCceeeCCcccceEEEEEeCCcc-
Q 004699 441 LSKY--DNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED-FSPRNGRWN--FNNKKLVQPTKIERWAVVNFSARC- 514 (735)
Q Consensus 441 ~~~~--~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~-~~~~~g~Wn--~~~~kf~~p~~i~~W~vv~~~~~~- 514 (735)
.+.- +..+.|+.|||+++.+.++|+||+|++.+|.+|++.. ..+..++|. ++.-.++....+++|+|++..+..
T Consensus 406 ~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~ 485 (845)
T KOG1042|consen 406 RLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNS 485 (845)
T ss_pred HHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHH
Confidence 8754 3457899999999999999999999999999999753 345668998 777788888899999999766554
Q ss_pred cHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhc
Q 004699 515 DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594 (735)
Q Consensus 515 ~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~ 594 (735)
.++.|++.|.+.+..+||+|..|..+.+.+ ++.+.|.++|++....++|+|+||+|+ .+.+.|++||+++
T Consensus 486 ~a~~fi~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~ 555 (845)
T KOG1042|consen 486 EAQEFINMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYL 555 (845)
T ss_pred HHHHHHHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhhe
Confidence 799999999999999999999998876542 556788889998888889999999999 8899999999999
Q ss_pred ccccCceeeEeecccCC-----HHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCCCCeE
Q 004699 595 LADFGIVTQCMAPMRVN-----DQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSI 669 (735)
Q Consensus 595 ~~~~GI~TQci~~~k~~-----~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~~pSi 669 (735)
+++.+||||||..++.+ .+.+++|+|||||||||..|.+ +||+ +.+||||+||+|.+.. ...|+
T Consensus 556 cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V------~IPL---k~lMiVG~Dv~hd~~~--k~rsv 624 (845)
T KOG1042|consen 556 CVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKV------EIPL---KGLMIVGFDVYHDPTL--KGRSV 624 (845)
T ss_pred eccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEE------eeec---ccceEEEEEeecCccc--cCceE
Confidence 99999999999987542 3468999999999999999998 4787 7899999999998754 57899
Q ss_pred EEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCcE
Q 004699 670 AAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVV 728 (735)
Q Consensus 670 aavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~~ 728 (735)
+|+|||+| +.+|+|+|.+..|...+|+.+.|.- ++..+|++|++.|..|
T Consensus 625 ga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L~~---------~~~~ALr~y~~~n~~L 673 (845)
T KOG1042|consen 625 GAFVASMN-NDFTRWFSRVIEQENGQELADNLKV---------FLAKALRQYYEVNRTL 673 (845)
T ss_pred EEEEEeec-cchhhhhhheecccCHHHHHHHHHH---------HHHHHHHHHHHhcccC
Confidence 99999999 5999999999999999999999986 9999999999999765
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.1e-47 Score=427.49 Aligned_cols=255 Identities=42% Similarity=0.694 Sum_probs=223.7
Q ss_pred hhhhccCceecCcceeeeeeecCCCeeeeCCC-cccCCCCCccccCCceeeCCcccceEEEEEeCCcc-------cHHHH
Q 004699 448 PMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARC-------DIRSL 519 (735)
Q Consensus 448 ~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~-~~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~~-------~~~~f 519 (735)
++|++|||+|+++|++|+||+|+||+|.|+++ ....+.+|+|++++++|++++.+++|+|+++..+. +++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 45567899999999999999999999999987532 58999
Q ss_pred HHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccC
Q 004699 520 VRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFG 599 (735)
Q Consensus 520 ~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~G 599 (735)
++.|.+.|+.+||.+. ..+. ...++++.+++.+++.....++|||||||+ ++.++|+.||++||.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT--TAIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc--cccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1111 113567888888888765578999999998 778999999999999999
Q ss_pred ceeeEeeccc----CCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCC-CCCCeEEEEEe
Q 004699 600 IVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGH-SDIPSIAAVVS 674 (735)
Q Consensus 600 I~TQci~~~k----~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~-~~~pSiaavVa 674 (735)
|+||||..++ .++||+.||+||||+||||+||.++... .+++...+|||||+||+||++++ ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999854 5799999999999999999999997532 23445689999999999999875 46899999999
Q ss_pred ccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCc
Q 004699 675 SRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEV 727 (735)
Q Consensus 675 S~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~ 727 (735)
|+|+ .+++|.+.+++|++++|+|++|.+ |++++|++|++.||.
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l~~---------~~~~~l~~~~~~~~~ 268 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDLES---------MVRELLRAFKKATGK 268 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHHHH---------HHHHHHHHHHHHhCC
Confidence 9997 899999999999999999999986 999999999999994
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.3e-46 Score=422.84 Aligned_cols=284 Identities=23% Similarity=0.346 Sum_probs=245.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcCCCCc--hhhhccCceecCcceeeeeeecCCCeeeeCCCcccCCCCCccccC--
Q 004699 417 RASLVEKSRQKPQERMSVLSNALKLSKYDNE--PMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFN-- 492 (735)
Q Consensus 417 ~~~mi~~s~~~P~eR~~~i~~~~~~~~~~~~--~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn~~-- 492 (735)
..+|+++++.+|.+|++.|.++++.++++.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4579999999999999999999999887665 689999999999999999999999999999976556778999854
Q ss_pred CceeeCCcccceEEEEEeCCcc-cHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCC
Q 004699 493 NKKLVQPTKIERWAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAP 571 (735)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~ 571 (735)
+..|+.+..+++|+++++..+. ++..|++.|.+.++.+||.+.+|..+...+ .+.+++++.+++.....+
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5678999999999999886443 799999999999999999999887654322 234567777777655679
Q ss_pred eEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-----CCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccC
Q 004699 572 QFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSK 646 (735)
Q Consensus 572 ~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~ 646 (735)
+|+|||+|+ +..++|+.||++|+.+.||+||||..++ ...++++||+||||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 7789999999999999999999999854 245789999999999999999999642 1335
Q ss_pred CCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceee-ccccccccCCCcccchHHHHHHHHHhcc
Q 004699 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEM-IDSLFKKVSDTEDEGIIRLFYCLTYLRW 725 (735)
Q Consensus 647 ~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~-I~~L~~~~~~~~~~~m~~e~L~~f~~~n 725 (735)
.+|||||+||+||+++ ..||+||+|||+|. ++++|++.++.|..++|+ +++|.+ |++++|+.|+++|
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l~~---------~~~~~l~~y~~~~ 294 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSLGK---------SMKKALKAYKKEN 294 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHHHH---------HHHHHHHHHHHHh
Confidence 8899999999999874 57999999999995 999999999999999998 888876 9999999999998
Q ss_pred CcE
Q 004699 726 EVV 728 (735)
Q Consensus 726 ~~~ 728 (735)
|.+
T Consensus 295 ~~~ 297 (448)
T cd04658 295 KKL 297 (448)
T ss_pred CCC
Confidence 753
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.4e-37 Score=343.52 Aligned_cols=231 Identities=24% Similarity=0.296 Sum_probs=190.7
Q ss_pred ceeeeeeecCCCeeeeCCCcccCCCCCccccCCceeeCCccc-ceEEEEEeCCcccHHHHHHHHHHHhhhcCCcCCC-Cc
Q 004699 461 FAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKI-ERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQ-PF 538 (735)
Q Consensus 461 ~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn~~~~kf~~p~~i-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-p~ 538 (735)
+++|+||+||+|.|.|+++ |++++++|.+|+.+ .+|+|+++.. ...++|++.|.+.++++||.+.+ |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~-~~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRN-EEVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEccc-HHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6899999999999999874 99999999999999 9999998864 34678999999999999999987 55
Q ss_pred cccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-----CCHH
Q 004699 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQ 613 (735)
Q Consensus 539 ~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q 613 (735)
....+..+ ...+.+...|+++ ...+++|+|||+|+ +++++|+.||++++.+ ||+||||..++ .+++
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNA---IKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHH---hhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43332211 0123344444443 33478999999999 7789999999999988 99999998742 4689
Q ss_pred HHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCC-CCCCCeEEEEEeccCCCcccceeeEEEecC
Q 004699 614 YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG-HSDIPSIAAVVSSRHWPLISRYRAAVRTQS 692 (735)
Q Consensus 614 ~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~-~~~~pSiaavVaS~d~p~~tky~~~~~~Q~ 692 (735)
|++||+||||+||||+||.|+.. .+...+|||||+||+|++++ ....||++|+|||+|. . +.|.+.++.|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 99999999999999999999642 12347899999999999886 3358999999999995 4 56667788999
Q ss_pred CceeeccccccccCCCcccchHHHHHHHHHhccCc
Q 004699 693 PKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEV 727 (735)
Q Consensus 693 ~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~ 727 (735)
.++|++++|.+ |++++|+.|+++|+.
T Consensus 215 ~~~~~~~~l~~---------~~~~~L~~y~~~~~~ 240 (393)
T cd02826 215 SREVKLQDLGE---------VIKKCLDGFKKSTGE 240 (393)
T ss_pred CccchHHHHHH---------HHHHHHHHHHHHcCC
Confidence 99999998876 999999999999997
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.90 E-value=4.8e-24 Score=228.45 Aligned_cols=139 Identities=40% Similarity=0.517 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc---C--CHHHHHHHHHHHhhccCCce-eeccccCCCCCCcccC
Q 004699 573 FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---V--NDQYLTNVLLKINAKLGGLN-SLLAVEHSPSIPIVSK 646 (735)
Q Consensus 573 ~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k---~--~~q~~~Ni~lKIN~KLGG~n-~~l~~~~~~~ip~~~~ 646 (735)
+||||+|+ ++.+.|..+|++++.++||+||||..++ . ..++++||+||||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58999999 8889999999999999999999999753 3 36899999999999999995 555421 11222
Q ss_pred CCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccC
Q 004699 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWE 726 (735)
Q Consensus 647 ~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~ 726 (735)
.+|||||+||+|++++....||++|+|+|+|. ..++|.+.++.|..++|++++|.+ |+.++|+.|+++|+
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l~~---------~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNLEE---------IIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHHHH---------HHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcchhh---------HHHHHHHHHHHHcC
Confidence 78999999999999875458999999999994 999999999999999999999886 99999999999999
Q ss_pred c
Q 004699 727 V 727 (735)
Q Consensus 727 ~ 727 (735)
.
T Consensus 145 ~ 145 (302)
T PF02171_consen 145 K 145 (302)
T ss_dssp T
T ss_pred C
Confidence 6
No 8
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.90 E-value=1.3e-23 Score=197.72 Aligned_cols=129 Identities=40% Similarity=0.576 Sum_probs=108.3
Q ss_pred CcHHHHHHHhcCCCCCCchh-HHHHHHHhcCcEEEEEecC--ceEEEeccCccccccceeecccCCCCCCCCCccceeee
Q 004699 286 GPVVDFLIANQNVRDPFSID-WAKAKRTLKNLRIKTITSN--QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEIT 362 (735)
Q Consensus 286 ~~l~d~l~~~~~~~~~~~~~-~~~~~~~Lkgl~V~t~~~n--r~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iT 362 (735)
++|+|+|.+..+.+...... ..++++.|+|++|.++|++ +.|+|.||+++++++.+|+.+.+ .++|
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g-----------~~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDG-----------KEIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTS-----------EEEE
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCC-----------ceEE
Confidence 47899999987655433222 2348999999999999999 99999999999999999987632 5999
Q ss_pred HHHHHHHhcCcccccCCCCCeEecCCCCC--CccccccceeEcCCCcccCCCCHHHHHHHHHHHhc
Q 004699 363 VYDYFVNNRNIDLRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQ 426 (735)
Q Consensus 363 V~eYf~~~Y~i~L~~~p~lP~l~vg~~~~--~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~ 426 (735)
|+|||+++||++|+| |+||||.++...+ ++|||||||.|+|+|++.+++.+.+++.|++.+|+
T Consensus 70 v~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~ 134 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACS 134 (135)
T ss_dssp HHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS
T ss_pred hHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999 9999999998776 99999999999999999999999999999999885
No 9
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.81 E-value=4.3e-20 Score=167.92 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=90.4
Q ss_pred CcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHH
Q 004699 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (735)
Q Consensus 286 ~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~e 365 (735)
.+|+|++.+..+... ...++++++++|+|++|.+.|+|+.|+|+||++++++.++|+.+++ .++||+|
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----------~~~S~~~ 69 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----------TEITFVE 69 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----------CeeeHHH
Confidence 468888887654321 1126788999999999999999999999999999999999975432 3789999
Q ss_pred HHHHhcCcccccCCCCCeEecCCC--------CCCccccccceeEcCC
Q 004699 366 YFVNNRNIDLRYSGDLPCINVGKP--------KRPTYIPLELCELVSL 405 (735)
Q Consensus 366 Yf~~~Y~i~L~~~p~lP~l~vg~~--------~~~~ylP~Elc~v~~~ 405 (735)
||+++||+.|+| ++||||.++.+ .+++|||||||.++|.
T Consensus 70 Yy~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 70 YYKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 999999999999 99999999753 3489999999999984
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.80 E-value=2.1e-19 Score=164.09 Aligned_cols=107 Identities=41% Similarity=0.773 Sum_probs=93.1
Q ss_pred CcHHHHHHHhcCCCCC---CchhHHHHHHHhcCcEEEEEec---CceEEEeccCccccccceeecccCCCCCCCCCccce
Q 004699 286 GPVVDFLIANQNVRDP---FSIDWAKAKRTLKNLRIKTITS---NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQEL 359 (735)
Q Consensus 286 ~~l~d~l~~~~~~~~~---~~~~~~~~~~~Lkgl~V~t~~~---nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~ 359 (735)
++|+|++.+.++.... .+.++.++.++|+|++|.++|. +|.|+|.||++.++.+.+|..++++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----------~ 71 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----------K 71 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----------c
Confidence 6899999988765432 2346788999999999999997 6999999999999989999865431 4
Q ss_pred eeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEc
Q 004699 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELV 403 (735)
Q Consensus 360 ~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~ 403 (735)
++||+|||+++||++|+| |+||||++|+.++++|+|||||.|+
T Consensus 72 ~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 72 EISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 899999999999999999 9999999999888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.80 E-value=1.5e-19 Score=164.86 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=90.6
Q ss_pred CCcHHHHHHHhcCCCCC----CchhHHHHHHHhcCcEEEEEec--CceEEEeccCccccccceeecccCCCCCCCCCccc
Q 004699 285 PGPVVDFLIANQNVRDP----FSIDWAKAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (735)
Q Consensus 285 ~~~l~d~l~~~~~~~~~----~~~~~~~~~~~Lkgl~V~t~~~--nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (735)
.++|+|++.+..+.++. .+.++.++.+.|+|++|.++|+ ++.|+|.||++.+++++ |...++
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~----------- 68 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDG----------- 68 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCC-----------
Confidence 36899999887654432 3447788999999999999998 79999999999999887 754332
Q ss_pred eeeeHHHHHHHhcCcccccCCCCCeEecCCC---CCCccccccceeEc
Q 004699 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKP---KRPTYIPLELCELV 403 (735)
Q Consensus 359 ~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~---~~~~ylP~Elc~v~ 403 (735)
.++||+|||+++||++|+| |+||||++|+. .+.+|||||||.|+
T Consensus 69 ~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 69 KEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 4899999999999999999 99999999987 67899999999985
No 12
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.70 E-value=5.8e-17 Score=180.40 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEEcCCCCC------CCchhhhhhhcccccCceeeEeeccc-----CCHHHHHHHHHHHh
Q 004699 555 RVEKMFDEIQSKLPGAPQFLLCLLPERKN------SDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQYLTNVLLKIN 623 (735)
Q Consensus 555 ~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~------~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q~~~Ni~lKIN 623 (735)
.+....+...+.....++++||++|+ +. .++|+.||+++ .+.||+||||..++ ...+++.||++|||
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~ 172 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALY 172 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHH
Confidence 33344444443323468999999999 54 78999999987 58999999998753 24678999999999
Q ss_pred hccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeecc----
Q 004699 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMID---- 699 (735)
Q Consensus 624 ~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~---- 699 (735)
+||||+||.|+. + ...+|||||+||+|+..+....+++|+|+.+ +. . +.+..|.+..+.+.
T Consensus 173 aKlGG~pW~l~~------~--~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~g-~-----g~~~~~~~~~~~~~~~~~ 237 (404)
T cd04659 173 AKLGGIPWKLDA------D--SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-DG-L-----GLILRGAPIEEPTEDRSP 237 (404)
T ss_pred HhcCCCceEccc------C--CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-CC-C-----EEEEecCccCCcccccCH
Confidence 999999999963 1 2478999999999998653234566655443 32 1 12233334444333
Q ss_pred -ccccccCCCcccchHHHHHHHHHhccCc
Q 004699 700 -SLFKKVSDTEDEGIIRLFYCLTYLRWEV 727 (735)
Q Consensus 700 -~L~~~~~~~~~~~m~~e~L~~f~~~n~~ 727 (735)
+|. .+++++|+.|+++++.
T Consensus 238 ~~~~---------~~l~~~l~~y~~~~~~ 257 (404)
T cd04659 238 ADLK---------DLLKRVLEGYRESHRG 257 (404)
T ss_pred HHHH---------HHHHHHHHHHHHHcCC
Confidence 454 4999999999999886
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.53 E-value=6.2e-15 Score=113.36 Aligned_cols=51 Identities=49% Similarity=0.762 Sum_probs=41.7
Q ss_pred ecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecC
Q 004699 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP 285 (735)
Q Consensus 234 ~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~ 285 (735)
.+||+||+++... .+|++|+|+|+|||+|+||+.++|+||||+|+++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987654 68999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.50 E-value=1.9e-14 Score=133.70 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=70.9
Q ss_pred HHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCCeEecCC
Q 004699 309 AKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388 (735)
Q Consensus 309 ~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~ 388 (735)
..+.|+|++|.|.|++|.|+|.||+ +.+++++|+.++++ ..+||+|||+++|||.|+| ++||||.+..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~----------~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~ 94 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGL----------GYATYAEYFKEKYGIVLNH-PNQPLLKGKQ 94 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCC----------ceeeHHHHHHHHhCceecc-CCcceEEEec
Confidence 4678999999999999999999999 99999999765421 3699999999999999999 9999998631
Q ss_pred -----------------------CCCCccccccceeEcC
Q 004699 389 -----------------------PKRPTYIPLELCELVS 404 (735)
Q Consensus 389 -----------------------~~~~~ylP~Elc~v~~ 404 (735)
....++||||||.+.+
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 0114689999999875
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.79 E-value=6.4e-09 Score=93.38 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHHhcCcEEEEEecC----ceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCCeEe
Q 004699 310 KRTLKNLRIKTITSN----QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCIN 385 (735)
Q Consensus 310 ~~~Lkgl~V~t~~~n----r~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~ 385 (735)
.+.+.|..|.+.|+| ++|+|++|.++.++.++|+.+ ..+|++|||+++|||.|++ ++||||.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~ 103 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------------EYETFEEYYKKKYKLDIQN-LNQPLLD 103 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------------CCccHHHHHHHhcCeEecc-CCCCcEe
Confidence 367999999999999 899999999999999999533 2699999999999999999 9999999
Q ss_pred cCC
Q 004699 386 VGK 388 (735)
Q Consensus 386 vg~ 388 (735)
|..
T Consensus 104 v~~ 106 (122)
T cd02843 104 VDH 106 (122)
T ss_pred ecC
Confidence 864
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.43 Score=53.81 Aligned_cols=171 Identities=19% Similarity=0.127 Sum_probs=94.4
Q ss_pred ecCCCeeeeCC-CcccCCCCCccccCCceeeCCcccceEEEEEe--CCcc---cHHHHHHHHHHHhhhcC-CcC--CCCc
Q 004699 468 VLPAPRLKFGN-GEDFSPRNGRWNFNNKKLVQPTKIERWAVVNF--SARC---DIRSLVRDLIKCGEMKG-ILI--DQPF 538 (735)
Q Consensus 468 vL~~P~i~~g~-~~~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~--~~~~---~~~~f~~~L~~~~~~~G-~~i--~~p~ 538 (735)
+-.+|.|..|+ |.+-....--|++. ....|.....|.-+.. .... ....+.+.+....+..+ +.. .-+.
T Consensus 306 ~ek~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~ 383 (685)
T COG1431 306 PEKGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLT 383 (685)
T ss_pred cccCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcccce
Confidence 34566777666 43221222233321 2334444455554422 1222 46778888888877665 332 1121
Q ss_pred cccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHHHH
Q 004699 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYL 615 (735)
Q Consensus 539 ~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~ 615 (735)
. +..+ .|....+.+..++.++ ....+...-+- ++...|+.+|+ .+.=|++|.+.-. +.-.-++
T Consensus 384 l-~~a~---~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~ 449 (685)
T COG1431 384 L-HVAG---KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTK 449 (685)
T ss_pred e-eecc---cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhh
Confidence 1 1100 0111112333333333 11223333334 66788999998 4556999999863 3335579
Q ss_pred HHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCC
Q 004699 616 TNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG 662 (735)
Q Consensus 616 ~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~ 662 (735)
+|+++|+-+|-+|+++.+... . ..-+-|+|+||+..+-|
T Consensus 450 tnla~~~~~ktlgqpY~~r~~---~-----gpvDaivGlDvsr~~~g 488 (685)
T COG1431 450 TNLASKRYLKTLGQPYLKRNG---L-----GPVDAIVGLDVSRVSEG 488 (685)
T ss_pred hHHHHHHHHHhcCCceeeecc---C-----CCccceeeeeeeEEeeC
Confidence 999999999999999987521 1 12258999999987643
No 17
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=56.89 E-value=20 Score=32.69 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 555 RVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 555 ~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
.+...++.+++. ...|.|+++...+...+..|...|...+.+.||.+..+.. .....+-+-..+-++|.-
T Consensus 15 ~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 15 ELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 344445555554 3468898888876456788999999888999999999986 455667778888888854
No 18
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.25 E-value=36 Score=36.26 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
...++.++++....|.|+++...++..+..|...|.....+.||.+..+... .....-+-+.+.++|.-
T Consensus 18 ~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 18 AAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334455544334688888888775677889999998888999999888753 33344455667777753
No 19
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=47.44 E-value=32 Score=40.74 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=9.3
Q ss_pred eeeeHHHHH----HHhcCccccc
Q 004699 359 LEITVYDYF----VNNRNIDLRY 377 (735)
Q Consensus 359 ~~iTV~eYf----~~~Y~i~L~~ 377 (735)
...|+.-|. +++|.-.|+|
T Consensus 859 qk~TLLHfLae~~e~kypd~l~F 881 (1102)
T KOG1924|consen 859 QKTTLLHFLAEICEEKYPDILKF 881 (1102)
T ss_pred hhhHHHHHHHHHHHHhChhhhcc
Confidence 356654443 4445444444
No 20
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.50 E-value=56 Score=34.70 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc--cCCcee
Q 004699 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNS 631 (735)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K--LGG~n~ 631 (735)
+.+.++.++++....|.|.++...++..+..|...|...+.+.||.+..+... .....-+-+.+.++|.- .-|+-.
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 95 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILL 95 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEE
Confidence 33344455544334578888877765677889999998888999999888753 34445566777788753 345433
No 21
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.30 E-value=61 Score=34.46 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=46.3
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
++.++++....|.|+++...+...+..|...|.....+.||.+..+... ....+-+-+.+.++|.=
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD 88 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3444443234578888877765677899999888888999999888753 44555566777777643
No 22
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.19 E-value=65 Score=34.39 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
++.++.+....|.|+++...++..+..|...|...+.+.||.+..+... .....-+-..+.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 22 IDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443223578888877775678899999998889999999888763 34444466777777754
No 23
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.39 E-value=78 Score=33.67 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=46.3
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
++.++++....|.|+++...+...+..|...|...+.+.||.+-.+... .....-+-+.+-++|.-
T Consensus 28 i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 28 VERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433223578888877765678899999998888999999887753 44444566777888753
No 24
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.80 E-value=60 Score=34.45 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+... ....+-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 19 VAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344455444223578888877664677889999998888999999888764 34444455677788765
No 25
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.56 E-value=67 Score=34.32 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhcc--CCce
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAKL--GGLN 630 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~KL--GG~n 630 (735)
.++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+-+++.++|.-- -|+-
T Consensus 21 ~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIi 95 (297)
T PRK14186 21 QIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGIL 95 (297)
T ss_pred HHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3444444323357888887776457788999999888899999988875 3444445667778887643 4543
No 26
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=41.25 E-value=65 Score=35.11 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 561 DEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 561 ~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
+.++++....|.|+++.+.++.++..|...|...+.+.||.+..+... .....-+-..+.++|.
T Consensus 77 ~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 77 RKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334333233467776666664566777777777777777777766542 2233334455566653
No 27
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.12 E-value=68 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
..|.|.++...++..+..|...|.....+.||.+..+.. ......-+-+.+-++|.-
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN 87 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888888877567889999999999999999988875 334444466777788743
No 28
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.09 E-value=72 Score=34.10 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
...++.++++....|.|+++...++..+..|...|...+.+.||.+-.+... .....=+-+++.++|.-
T Consensus 19 ~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 19 AAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444443233578888877775677889999988888999998877653 33444455677777755
No 29
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.40 E-value=79 Score=33.57 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc--cCCceeec
Q 004699 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNSLL 633 (735)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K--LGG~n~~l 633 (735)
..++.++++....|.|.++...++..+..|..+|.....+.||.+..+... .....-+..++-++|.. .-|+|-.+
T Consensus 21 ~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 21 VRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 334444444233578888887775678889999998888999998888763 33444466777778765 56776654
No 30
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=39.98 E-value=81 Score=33.73 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=44.1
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. .....+-+-..+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334443323357888877766467788999998888899999888865 344444455666667644
No 31
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=39.81 E-value=77 Score=34.76 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
.++.++++....|.|+++...++..+..|...|...+.+.||.+..+... ....+-+-+.+.++|.
T Consensus 92 ~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 92 EVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34445444333578888877775677889998888888899988777643 3344445566667764
No 32
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.79 E-value=77 Score=33.66 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh--ccCCcee
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLNS 631 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~--KLGG~n~ 631 (735)
.++.++++....|.|+++...+...+..|...|...+.+.||.+..+... .....-+-+.+.++|. ..-|+--
T Consensus 22 ~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 22 TIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred HHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 34444443223578888877664577889999988888999999888753 3455556677778886 4456543
No 33
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.12 E-value=77 Score=33.87 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
.++.++++....|.|+++...++..+..|...|...+.+.||.+-.+... .....-+-+.+.++|.-
T Consensus 20 ~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 20 RVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444433223578888888775678899999999999999999887753 34444456777888754
No 34
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.33 E-value=74 Score=34.01 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
+.+.++.++++....|.|+++..-++..+..|..+|...+.+.||.+-.+.. ......-+-..+.++|.-
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334445544433357888887766567788999998888899999877764 334444455667777653
No 35
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.24 E-value=84 Score=33.38 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
.++.++++....|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+-+++.++|.-
T Consensus 21 ~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 21 KVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444323357888887766567788999888888899999877765 344445566777788754
No 36
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.79 E-value=85 Score=33.32 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
.++.++++....|.|+++...+...+..|...|...+.+.||.+..+... .....-+.+++.++|.-
T Consensus 20 ~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 20 QVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444433223578888777664567889999988888999999888653 33444456777777744
No 37
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.62 E-value=87 Score=33.21 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
+.++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... ....+-+-..+.++|.
T Consensus 19 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 19 QTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444433 23578888877765677889999998888999999887753 3344445677777776
No 38
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.93 E-value=85 Score=33.31 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
++.++++ ...|.|+++...+...+..|...|.....+.||.+..+... ....+-+-+.+.++|.
T Consensus 21 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 21 NQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 23578888877665677889999998888999999888764 3444445677778875
No 39
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.02 E-value=91 Score=33.14 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
.++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... .....-+...+.++|.-
T Consensus 22 ~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 22 EVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444433 23578888777665677889999888888999999887653 34444456677777765
No 40
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.47 E-value=94 Score=33.03 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
.|.|+++...+...+..|...|...+.+.||.+..+... ....+-+-+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888877664577889999998888999999888753 34444456677778765
No 41
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.24 E-value=99 Score=32.74 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
...++.++++....|.|.++...+...+..|...|...+.+.||.+..+... .....-+-+.+.++|.-
T Consensus 19 k~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 19 KNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444443112478888877774567789999888888999999877653 34444456677778754
No 42
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.92 E-value=1e+02 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~ 624 (735)
.|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+-+.+.++|.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57888777766566778988888888888988877765 23333344455566654
No 43
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.19 E-value=1.1e+02 Score=32.49 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
++.++++....|.|+++..-++..+..|...|...+.+.||.+-.+... .....-+-+.+-++|.-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 21 IQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433233578887777664677889988888888899988777653 33444455677777754
No 44
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=32.49 E-value=1.2e+02 Score=30.67 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccccc
Q 004699 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLF 702 (735)
Q Consensus 646 ~~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~ 702 (735)
..+.+|-|+||+|... +.-.+||+|.- +||+..-....++.......-|..+.
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv~-~~~~~~~~~~~~~~~~~~~PYIPG~L 75 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVVL-DYPDLEVVETAVAVGEVTFPYIPGLL 75 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEEE-ECCCCcEEEEEEEEEecCCCCcchhH
Confidence 4678999999999752 23455555543 55555555555554444444455543
No 45
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=31.87 E-value=80 Score=31.28 Aligned_cols=42 Identities=26% Similarity=0.507 Sum_probs=32.9
Q ss_pred eEEEEEecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHH
Q 004699 69 NHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114 (735)
Q Consensus 69 N~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~ 114 (735)
=+|+......+..+|-|.|.+ .+...+|++++-+|+.+....
T Consensus 108 ~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 108 TMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred EEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 357777665567899999999 456778999999998877554
No 46
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.69 E-value=92 Score=37.15 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=14.6
Q ss_pred cccCCCCCCCCCCEEEEEeeEEEEEec
Q 004699 50 VPISRRGLGSRGQRISLLTNHFKVNVT 76 (735)
Q Consensus 50 ~~~~Rp~~Gt~G~~i~L~tN~f~v~~~ 76 (735)
++|+|+..+. =.+-.+.-|+|=|.++
T Consensus 624 ~~Mrr~nW~k-I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 624 VPMRRFNWSK-IVPRDLSENCFWVKVN 649 (1102)
T ss_pred CccccCCccc-cCccccCccceeeecc
Confidence 5566666555 2444555666665543
No 47
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.22 E-value=1.3e+02 Score=32.06 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
..|.|+++..-++..+..|...|.....+.||.+-.+... .....-+-+.+-++|.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 30 KKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578888777664567889999888888999998877653 3333334566677765
No 48
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.00 E-value=1.3e+02 Score=32.22 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
..|.|+++...++..+..|...|...+.+.||.+-.+... ....+-+.+.+.++|.-
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578887777664567889998888888999988777653 34444456677777754
No 49
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.44 E-value=1.4e+02 Score=31.72 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
..|.|+++...++..+..|...|...+.+.||.+..+... .....-+-+.+.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3577887777664567789999888888999998887653 34444456777788764
No 50
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.63 E-value=1.7e+02 Score=31.14 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=39.6
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
.|.|.++...++..+..|...|...+.+.||.+-.+... ....+-+-..+-++|.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 578887777665677889999888888999988777653 3444445566667764
No 51
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.00 E-value=1.5e+02 Score=31.42 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~ 624 (735)
.|.|+++...+...+..|...|...+.+.||.+-.+.. .....+-+-+.+-++|.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888887766456788999988888899999877765 33444445666677765
No 52
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=25.37 E-value=1.5e+02 Score=31.32 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~ 624 (735)
..+.++++....|.|.+++..+.-.+..|-..|...+.+.||.+..... ......-+-++..++|.
T Consensus 19 ~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 19 KVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 3444444323467888888876456789999999999999999988876 34455566667677753
No 53
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.27 E-value=1.7e+02 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
..|.|+++...+...+..|...|...+.+.||.+..+... .....-+-.++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578877777664567889888888888899888877653 3343345566677764
No 54
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=1.6e+02 Score=31.38 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhh
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~ 624 (735)
.|.|+++...++..+..|...|...+.+.||.+-.+... .....-+-..+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578887777664567889999888888999998887653 3344445566677764
No 55
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.01 E-value=60 Score=40.18 Aligned_cols=31 Identities=39% Similarity=0.799 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCC
Q 004699 15 NGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGL 57 (735)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rp~~ 57 (735)
++.|+.-||||| .||+.+|.. ...+|.-||+
T Consensus 2 a~lppg~ppppp-pppg~epps-----------~pppPppPg~ 32 (2365)
T COG5178 2 ASLPPGNPPPPP-PPPGFEPPS-----------QPPPPPPPGV 32 (2365)
T ss_pred CCCCCCCCcccc-cCCCCCCCC-----------CCCCccCCCc
No 56
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.96 E-value=2.1e+02 Score=30.39 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCCHHHHHHHHHHHhhc
Q 004699 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (735)
Q Consensus 569 ~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKIN~K 625 (735)
..|.|+++...+...+..|...|.....+.||.+..+... .....-+-..+.++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3577877777664567788888887788888888777653 33333445556666543
No 57
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=20.73 E-value=59 Score=32.12 Aligned_cols=20 Identities=40% Similarity=1.124 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q 004699 18 PDSLPPPPPVIPPDFVPTRVE 38 (735)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (735)
.+-+||||| +||-+.|.-.+
T Consensus 166 ~sfmpppPP-~pp~i~p~~~d 185 (218)
T KOG4327|consen 166 NSFMPPPPP-MPPPICPDSLD 185 (218)
T ss_pred cccCCCCCC-CCcccCCCCch
Confidence 344788888 78878776543
No 58
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=1.2e+02 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=26.5
Q ss_pred CCCCchhhhhhhcccccCceeeEeecccCCHHHHHHH
Q 004699 582 KNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNV 618 (735)
Q Consensus 582 k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni 618 (735)
+-...|+.||+ ..+.|.+|-|++--|.+.|.+.|+
T Consensus 142 rP~SfydkI~~--Nr~~glHTLcLLDIkvkEqs~enl 176 (272)
T KOG3123|consen 142 RPESFYDKIKE--NRQLGLHTLCLLDIKVKEQSVENL 176 (272)
T ss_pred CchhHHHHHHH--hhhcCceeEEEEEEeeccHHHHHH
Confidence 44568999995 679999999998766555555554
No 59
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=20.07 E-value=2.2e+02 Score=27.33 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhcc
Q 004699 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRW 725 (735)
Q Consensus 646 ~~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n 725 (735)
+.|.-|-++|+||-.. .-.|+++|.=.|.--..+.|-...+... +-.+|. .+|+|.|..++++.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~--~~~dDy----------~~M~Evl~RR~~~~ 72 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRRFNIKTV--DGGDDY----------AAMREVLTRRFKRL 72 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EEEEEE----STT-HH----------HHHHHHHHHHHCCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCceEecCCC--CCCcHH----------HHHHHHHHHHHhcc
Confidence 3578899999999743 3467777765543112233333454421 111444 48899988888764
Done!