Query 004699
Match_columns 735
No_of_seqs 230 out of 1049
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 3E-116 9E-121 1046.2 61.1 617 48-728 24-662 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 1E-103 4E-108 936.1 45.8 648 47-728 15-832 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 2.7E-61 9.1E-66 559.2 18.9 478 122-726 48-560 (706)
4 1u04_A Argonaute, hypothetical 100.0 2.7E-58 9.4E-63 533.2 26.2 532 63-725 3-616 (771)
5 3ho1_A Argonaute; argonaute, p 100.0 3.4E-47 1.1E-51 433.4 29.7 510 63-728 6-537 (685)
6 2yha_A Post-transcriptional ge 100.0 4.1E-39 1.4E-43 351.7 16.7 215 491-727 2-234 (388)
7 2yhb_A QDE-2, post-transcripti 100.0 5.1E-38 1.7E-42 347.4 16.7 216 491-728 2-235 (437)
8 1vyn_A Argonaute2; nucleic aci 99.9 9.2E-28 3.1E-32 225.9 8.2 130 283-426 2-142 (143)
9 4g0o_A Protein argonaute 5; MI 99.9 9.6E-27 3.3E-31 218.1 12.2 132 493-633 2-139 (139)
10 4g0x_A Protein argonaute 1; MI 99.9 5.1E-26 1.7E-30 215.4 12.7 138 493-633 2-147 (147)
11 4g0m_A Protein argonaute 2; MI 99.9 6.5E-26 2.2E-30 215.4 9.7 139 493-633 2-150 (150)
12 2xfm_A MIWI, PIWI-like protein 99.9 2.8E-26 9.5E-31 217.4 6.7 135 284-438 1-150 (150)
13 3luc_A Protein argonaute-2; MI 99.9 1.4E-25 4.6E-30 210.2 11.0 129 493-630 2-138 (138)
14 3qir_A PIWI-like protein 2; st 99.9 2.6E-25 8.9E-30 208.8 6.7 132 284-436 1-148 (148)
15 3mj0_A Protein argonaute-2; ar 99.9 9E-24 3.1E-28 192.9 9.1 113 284-410 1-124 (124)
16 3o7v_X PIWI-like protein 1; PI 99.9 1.9E-22 6.5E-27 183.4 8.8 114 286-419 2-124 (124)
17 2w42_A PIWI, putative uncharac 99.8 6.8E-22 2.3E-26 218.6 1.6 212 468-727 5-244 (427)
18 1r6z_P Chimera of maltose-bind 99.8 6.2E-21 2.1E-25 217.5 9.1 124 276-413 375-509 (509)
19 2qvw_A GLP_546_48378_50642; di 98.8 2E-09 7E-14 125.8 5.6 85 308-405 151-254 (756)
20 4b4u_A Bifunctional protein fo 43.9 25 0.00086 36.1 5.3 66 560-625 43-109 (303)
21 4a26_A Putative C-1-tetrahydro 32.8 59 0.002 33.3 6.1 78 556-633 22-103 (300)
22 1a4i_A Methylenetetrahydrofola 31.4 61 0.0021 33.2 5.9 70 556-625 20-91 (301)
23 4a5o_A Bifunctional protein fo 30.6 68 0.0023 32.6 6.0 76 558-633 23-101 (286)
24 1b0a_A Protein (fold bifunctio 28.3 62 0.0021 33.0 5.2 70 556-625 19-89 (288)
25 2c2x_A Methylenetetrahydrofola 27.7 75 0.0026 32.2 5.7 68 557-625 20-88 (281)
26 3l07_A Bifunctional protein fo 26.4 70 0.0024 32.5 5.2 75 559-633 23-100 (285)
27 3p2o_A Bifunctional protein fo 25.1 84 0.0029 31.9 5.5 75 558-633 22-99 (285)
28 1edz_A 5,10-methylenetetrahydr 21.1 95 0.0033 32.1 5.1 67 556-624 21-88 (320)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=2.6e-116 Score=1046.23 Aligned_cols=617 Identities=29% Similarity=0.511 Sum_probs=527.2
Q ss_pred cccccCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhh-cCCCCeeec
Q 004699 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYD 126 (735)
Q Consensus 48 ~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~-~~~~~~~yD 126 (735)
...+|+|||+|+.|++|.|+||||+|.+. +..+|||+|+|++ +.++++++|+|++++.+++..+ |++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred cccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 45678999999999999999999999874 5679999999964 4556788999999999887433 555667999
Q ss_pred CCCceeecCCCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcC
Q 004699 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (735)
Q Consensus 127 G~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g 206 (735)
|+++|||+++||.+...+++.+... + ..++++|+|+|++++++++++|.+||+|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~-~-------------------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP-G-------------------------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CcceEEECCcCCCCCcceEEEEecC-C-------------------------CCCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence 9999999999997654433332210 0 0135789999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecCC
Q 004699 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (735)
Q Consensus 207 ~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~ 286 (735)
...+.+++++|+||||||+.+ ..++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~-~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLP-SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHH-HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCcHHHHHHHHHHHHhhc-cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCC
Confidence 987788999999999999964 4568999999999875544678999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCCC-------CchhHHHHHHHhcCcEEEEEe---cCceEEEeccCccccccceeecccCCCCCCCCCc
Q 004699 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (735)
Q Consensus 287 ~l~d~l~~~~~~~~~-------~~~~~~~~~~~Lkgl~V~t~~---~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~ 356 (735)
+|+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|+|+|.||++.++.+++|.++..+ +
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-------g 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-------G 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-------S
T ss_pred cHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC-------C
Confidence 999999987654322 234678899999999999999 56899999999999999999864321 1
Q ss_pred cceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 004699 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (735)
Q Consensus 357 ~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~~P~eR~~~i~ 436 (735)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||+|+++|+++|+++|+++|+..|.+|.+.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHH
Confidence 135899999999999999999 9999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCc--ccCCCCCccccCCceeeCCcccceEEEEEeCCc-
Q 004699 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (735)
Q Consensus 437 ~~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~--~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~- 513 (735)
++++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|+|++++++|++|+++++|++++++..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcc
Confidence 99999988888999999999999999999999999999999753 357889999999999999999999999998642
Q ss_pred -c---cHHHHHHHHHHHhhhcCCcCCC-CccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchh
Q 004699 514 -C---DIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (735)
Q Consensus 514 -~---~~~~f~~~L~~~~~~~G~~i~~-p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~ 588 (735)
+ .++.|++.|.+.|+.+||.+.. |..+.... ..++++.+|+.+++.. .+++|||||||+ + .++|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC-------chHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHH
Confidence 1 5899999999999999999974 43322211 1246788899988764 368999999997 4 58999
Q ss_pred hhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCC
Q 004699 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (735)
Q Consensus 589 ~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~ 665 (735)
.||++||+++||+||||..+ +.++||++||+||||+||||+||.+.+. ..|.+...+|||||+||+||++++..
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence 99999999999999999975 5689999999999999999999998643 24555568999999999999998667
Q ss_pred CCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCcE
Q 004699 666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVV 728 (735)
Q Consensus 666 ~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~~ 728 (735)
.|||||||||+|+ .+++|++.+++|.+++|+|++|.+ |++|+|++|+++|+.+
T Consensus 610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~~---------~~~~~L~~~~~~~~~~ 662 (861)
T 4f3t_A 610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLAA---------MVRELLIQFYKSTRFK 662 (861)
T ss_dssp CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHHH---------HHHHHHHHHHHHHSCC
T ss_pred CceEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHHH---------HHHHHHHHHHHHhCCC
Confidence 8999999999997 899999999999999999999986 9999999999998865
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.2e-103 Score=936.09 Aligned_cols=648 Identities=18% Similarity=0.252 Sum_probs=475.2
Q ss_pred ccccccCCCCCCCCCCEEEEEeeEEEEEecCCC-------------------ceEEEEEEEEeeCCCC---------C-C
Q 004699 47 VVRVPISRRGLGSRGQRISLLTNHFKVNVTNVE-------------------GHFYHYSVSVSYEDGR---------P-V 97 (735)
Q Consensus 47 ~~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~-------------------~~~y~Y~V~i~~~~~~---------~-v 97 (735)
..+.++.||||||.|++|.||||||.|.+.... ..||+|+|+|.++..+ + .
T Consensus 15 ~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~ 94 (1046)
T 4f1n_A 15 AIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQE 94 (1046)
T ss_dssp CCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------
T ss_pred ccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccc
Confidence 356789999999999999999999999987530 2799999999875321 1 1
Q ss_pred CCCcchHHHHHHHHHH--HhhhcCCCCeeecCCCceeecCCCC---CCceeEEEEec-----ccccccCCCCCCCCCCCC
Q 004699 98 DGKGAGRKVIDRVQET--YNAELDGKDFAYDGEKSLFTVGPLP---RNKLEFTVVLE-----DISSNRNNGNASPDAHGS 167 (735)
Q Consensus 98 ~~k~~~r~ii~~l~~~--~~~~~~~~~~~yDG~~~l~s~~~L~---~~~~~~~v~l~-----~~~~~~~~~~~~~~~~~~ 167 (735)
.++..+++||..|+++ ....+ +..+||||+++|||..+|| .....|.|... +..... -.+|++-..
T Consensus 95 ~~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~ 170 (1046)
T 4f1n_A 95 LSKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGA---PSNKASLQK 170 (1046)
T ss_dssp CCHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC---------------------------
T ss_pred cchhHHHHHHHHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEeccccccccCCccc---ccccccccc
Confidence 1345677888888775 11223 4569999999999999999 33335666543 110000 000000000
Q ss_pred CCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcCCCCcc--h---HHHHHHHHHHHhcccccc-cc-eec-cccc
Q 004699 168 PNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESEN--S---QEAFRVLDIILRQHAAKQ-GC-LLV-RQSF 239 (735)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~--~---~~~i~~lniilr~~~~~~-~~-~~v-gr~f 239 (735)
+ +. -..+.++|+|+|+++++|++.+|.+|+.|...+. . .+++++|++||++.+.+. +. ..+ |++|
T Consensus 171 ~---~~----~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkF 243 (1046)
T 4f1n_A 171 K---ID----PELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKF 243 (1046)
T ss_dssp --------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEE
T ss_pred c---cc----ccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCccc
Confidence 0 00 0235788999999999999999999999986532 1 678999999999988765 32 344 5678
Q ss_pred ccCCC-CCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecC-----------------CcHHHHHHHhcC----
Q 004699 240 FHNDP-KNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP-----------------GPVVDFLIANQN---- 297 (735)
Q Consensus 240 f~~~~-~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~-----------------~~l~d~l~~~~~---- 297 (735)
|..+. ....+|++|+|+|+|||+|||+++++|+||||+++++||+. ++|+|+|.++.+
T Consensus 244 F~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~ 323 (1046)
T 4f1n_A 244 FIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKA 323 (1046)
T ss_dssp EECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccc
Confidence 86554 34578999999999999999999999999999999999984 799999887643
Q ss_pred ----------CCCCCchhH-------HHHHHHhcCcEEEEEecC---------------ceEEEeccCccccccceeecc
Q 004699 298 ----------VRDPFSIDW-------AKAKRTLKNLRIKTITSN---------------QEYKITGLSEKLCKEQMFSLK 345 (735)
Q Consensus 298 ----------~~~~~~~~~-------~~~~~~Lkgl~V~t~~~n---------------r~~~I~gi~~~~~~~~~F~~~ 345 (735)
.+.+...++ .+++++|||++|.++|.+ +.|+|.||+..++.+++|.++
T Consensus 324 ~~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~ 403 (1046)
T 4f1n_A 324 IRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVL 403 (1046)
T ss_dssp HHSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC----
T ss_pred cccccccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEecc
Confidence 122223356 789999999999999954 469999999999999999876
Q ss_pred cCCC---C-CCCCCccceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHHHHHH
Q 004699 346 QKNV---K-DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLV 421 (735)
Q Consensus 346 ~~~~---~-~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi 421 (735)
+++. + +..++ .+.+|||+|||+++||++|+| |+||||++|++ .+|||||||.|++||+|+++|++ +++||
T Consensus 404 ~~~~~~~~~~~~g~-~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MI 477 (1046)
T 4f1n_A 404 ESSLKKNSAPKPNE-KPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYI 477 (1046)
T ss_dssp --------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHH
T ss_pred CCcccccccccCCc-CceEEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHH
Confidence 4310 0 01111 235899999999999999999 99999999985 37999999999999999999987 47999
Q ss_pred HHHhcChHHHHHHHHHHHH-----hcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCcc----------cCCCC
Q 004699 422 EKSRQKPQERMSVLSNALK-----LSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED----------FSPRN 486 (735)
Q Consensus 422 ~~s~~~P~eR~~~i~~~~~-----~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~----------~~~~~ 486 (735)
++|+++|.+|++.|.+... .+..+.+++|++|| +|+.+|++|+||||+||.|.|+++.. ..+++
T Consensus 478 KfAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~ 556 (1046)
T 4f1n_A 478 DFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESK 556 (1046)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGT
T ss_pred HHHccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccC
Confidence 9999999999999987642 24456788999999 99999999999999999999988642 34577
Q ss_pred CccccCCceeeCCcc-cceEEEEEeC-C-c-------ccHHHHHHHHHHHhhhcCCcCCCCc-cccc------------c
Q 004699 487 GRWNFNNKKLVQPTK-IERWAVVNFS-A-R-------CDIRSLVRDLIKCGEMKGILIDQPF-DVFE------------E 543 (735)
Q Consensus 487 g~Wn~~~~kf~~p~~-i~~W~vv~~~-~-~-------~~~~~f~~~L~~~~~~~G~~i~~p~-~v~~------------~ 543 (735)
|+|||++++|++|+. +.+|+++++. . + +++..|++.|++.|+.+||.+..|. .+.. +
T Consensus 557 G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~ 636 (1046)
T 4f1n_A 557 GNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGG 636 (1046)
T ss_dssp TBCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----
T ss_pred CcccCCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccc
Confidence 999999999999874 5666665442 2 1 2688999999999999999997641 1110 0
Q ss_pred CCcccCC------------------ChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEe
Q 004699 544 SPQFRRS------------------SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCM 605 (735)
Q Consensus 544 ~~~~~~~------------------~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci 605 (735)
..+.+.. ......+..+..+.++. ..++|||||||+++++++|+.||++||+++||+||||
T Consensus 637 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv 715 (1046)
T 4f1n_A 637 GRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCV 715 (1046)
T ss_dssp -----------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEE
T ss_pred ccccccccccccccccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEE
Confidence 0000000 00011234444454444 3679999999993377899999999999999999999
Q ss_pred ecc---cCCHHHHHHHHHHHhhccCCceeeccccCCCCCCccc----CCCEEEEeeeeccCCCCCCCCCeEEEEEeccCC
Q 004699 606 APM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVS----KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW 678 (735)
Q Consensus 606 ~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~----~~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~ 678 (735)
+.+ +.++||++||+||||+||||+||.|+.. .++++. ..||||||+||+|++++ +.+||||||||+|+
T Consensus 716 ~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d~ 790 (1046)
T 4f1n_A 716 VWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYDD 790 (1046)
T ss_dssp EHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCSS
T ss_pred ehhhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEECC
Confidence 974 5689999999999999999999999743 234432 35799999999995443 34699999999997
Q ss_pred CcccceeeEEEecCC-ceeeccccccccCCCcccchHHHHHHHHHhc-cCcE
Q 004699 679 PLISRYRAAVRTQSP-KVEMIDSLFKKVSDTEDEGIIRLFYCLTYLR-WEVV 728 (735)
Q Consensus 679 p~~tky~~~~~~Q~~-~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~-n~~~ 728 (735)
.+++|++++++|.+ ++|+|++|.+ |+.|+|+.|+++ |+.+
T Consensus 791 -~~t~y~s~~~~Q~~~~~Eii~~L~~---------~~~~~L~~y~~~n~~~l 832 (1046)
T 4f1n_A 791 -KFTQFPGDYMLQDGPGEEIITNVGS---------LMLNRLKIYQKHNNGKL 832 (1046)
T ss_dssp -SCCCCCEEEEEEEEETCCSCTTGGG---------GHHHHHHHHHHTTTTCC
T ss_pred -CcCeEeeEEEEecCCCccHHHHHHH---------HHHHHHHHHHHhcCCCC
Confidence 89999999999998 9999999985 999999999998 6654
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=2.7e-61 Score=559.17 Aligned_cols=478 Identities=15% Similarity=0.145 Sum_probs=350.5
Q ss_pred CeeecCCCceeecCCCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHH
Q 004699 122 DFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIA 201 (735)
Q Consensus 122 ~~~yDG~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~ 201 (735)
...|-.+...|+.++...+.+-. ... ++. .|+|++++++..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------------------~~~--~~~~~~~~~~~~---- 88 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEKDTLYL--TLS-------------------------------NGE--IVELKRVGEEEF---- 88 (706)
T ss_dssp SCEEEETTEEEESSCCTTCCCEE--EEC-------------------------------SSS--CEEEEECCCEEC----
T ss_pred CccccccccceeccccccceEEE--EcC-------------------------------CCC--EEEEEEEEEeec----
Confidence 45666777889999887654322 111 122 566999998872
Q ss_pred HHHcCCCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccc-cCCcEEEeecceEEEEeeC-CeeEEeeecce
Q 004699 202 NALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFAD-VGGGVLGCRGFHSSFRTTQ-GGLSLNIDVST 279 (735)
Q Consensus 202 ~~l~g~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~-l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~ 279 (735)
.|. .++.+++|+++++|+.. .+.+.++||+||++..+..++ -.+++|+|+||.+||+..+ ++++||+|++|
T Consensus 89 ---~~~--~~~~~~~~~~~~~~~~~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~Dvsh 161 (706)
T 1yvu_A 89 ---RGF--QNERECQELFRDFLTKT--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKF 161 (706)
T ss_dssp ---CCC--SCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEE
T ss_pred ---cCC--CCCHHHHHHHHHHHHHc--CChHhhhCccccCccccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeee
Confidence 000 15788999999999886 344558999999986543222 1568999999999999999 99999999999
Q ss_pred eeeecCCcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceE--EEecc-CccccccceeecccCCCCCCCCCc
Q 004699 280 TMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEY--KITGL-SEKLCKEQMFSLKQKNVKDDDGEV 356 (735)
Q Consensus 280 ~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~--~I~gi-~~~~~~~~~F~~~~~~~~~~~~~~ 356 (735)
+ |++..||+|+|.+ .+.. + ..+.++|+|++| +|++| +|+..+..+|.. +
T Consensus 162 K-vlr~~Tvld~l~~-~~~~-~--------------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~~--g--------- 213 (706)
T 1yvu_A 162 R-IQPFETLQTLLER-NDFN-P--------------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRL--C--------- 213 (706)
T ss_dssp E-EEESSCHHHHHHH-CCCC-C--------------TTCEEEETTCCCCEEEEEEEESTTSCHHHHHH--H---------
T ss_pred e-ecccchHHHHHHH-hhhc-c--------------hhHHhhcccceeccccCcccccCCCcceEecC--C---------
Confidence 9 4899999999998 3211 1 235678888999 99998 999999999962 1
Q ss_pred cceeeeHHHHHHHhcCcc--------cccCCCCCeEecCCCCC-CccccccceeEcCCCcccCCCCHHHHHHHHHHHhcC
Q 004699 357 QELEITVYDYFVNNRNID--------LRYSGDLPCINVGKPKR-PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (735)
Q Consensus 357 ~~~~iTV~eYf~~~Y~i~--------L~~~p~lP~l~vg~~~~-~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~~ 427 (735)
.++| ||+++|++. .+. +.+|++..+.... +.+++| ||.+++ |+++|+++|+++|+++
T Consensus 214 --~~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~~~~~~p~~lL~p-lc~~t~-------Ltd~q~~~mik~t~~~ 279 (706)
T 1yvu_A 214 --MERS---THKSSKKAWEELLKNRELRE-KAFLVVLEKGYTYPATILKP-VLTYEN-------LEDEERNEVADIVRME 279 (706)
T ss_dssp --HHTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEETTSCEEEGGGEEE-CCCCC-------------HHHHTSTTSCC
T ss_pred --CCcc---eEecccCcchhhhhcccccc-CCceEEeccCCCCCceeecc-ccccCC-------CCHHHHHHHHHHHccC
Confidence 2577 999888766 444 5555554432111 345555 777765 8999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCc--c-cCCCCCccccCCceeeCCcccce
Q 004699 428 PQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--D-FSPRNGRWNFNNKKLVQPTKIER 504 (735)
Q Consensus 428 P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~--~-~~~~~g~Wn~~~~kf~~p~~i~~ 504 (735)
|++|++.|+++++.+ ++.|++|||+|+++|++|+||||++|+|.+++|. . ....+|.|++++ +|+.++.++.
T Consensus 280 P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 354 (706)
T 1yvu_A 280 PGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSV 354 (706)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEE
T ss_pred HHHHHHHHHHHHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCcccccccC-ceeccccccc
Confidence 999999999998864 5889999999999999999999999999965443 2 223446677665 5778888999
Q ss_pred ---EEEEEeCCcc-cHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhC--CCCCeEEEEEc
Q 004699 505 ---WAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL--PGAPQFLLCLL 578 (735)
Q Consensus 505 ---W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~--~~~~~~vl~Il 578 (735)
|+++ +..++ +++.|++.|.+.|+.+||.|..|..+.... +.++.+++.+++.. ..+++|+|||+
T Consensus 355 ~~lW~~i-~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---------~~~~~~~~~l~~~~~~~~~~qlvlvIl 424 (706)
T 1yvu_A 355 EIISVSV-YKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILA---------QTREEAKEKLIPVINKIKDVDLVIVFL 424 (706)
T ss_dssp EEEEEEC------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---------SSTTHHHHHHHHHHTTTSSCSEEEEEE
T ss_pred ceEEEEE-ecchhHHHHHHHHHHHHHHHHcCceecCCccccccc---------hhHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 9555 33333 689999999999999999998774332211 23344555555332 24689999999
Q ss_pred CCCC-------CCCchhhhhhhcccccCceeeEeeccc----CCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCC
Q 004699 579 PERK-------NSDLYGPWKRKNLADFGIVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKV 647 (735)
Q Consensus 579 p~~k-------~~~~Y~~iK~~~~~~~GI~TQci~~~k----~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~ 647 (735)
|+ + +.++|+.||++|+ ++||+||||..++ .+.||++||+||||+||||+||.|+. | ...
T Consensus 425 p~-~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~ 494 (706)
T 1yvu_A 425 EE-YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGK 494 (706)
T ss_dssp C-----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTC
T ss_pred CC-ccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeecc------C--CCC
Confidence 99 6 6889999999966 9999999999753 35789999999999999999999963 2 236
Q ss_pred CEEEEeeeeccCCCCCCCCCeEEEEEeccCCC-cccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccC
Q 004699 648 PTIILGMDVSHGSPGHSDIPSIAAVVSSRHWP-LISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWE 726 (735)
Q Consensus 648 ~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p-~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~ 726 (735)
+|||||+||+||+.++ ..||+||+|||+|.. .+++|.+..+.|. ++|++++| +..+|+.|++.++
T Consensus 495 ~tmiIGiDVsH~~~~~-~~pSv~g~vas~d~~g~~~~~~~~~~~q~-~~ei~~~l------------~~~~l~~~~~~~~ 560 (706)
T 1yvu_A 495 VDAFVGIDISRITRDG-KTVNAVAFTKIFNSKGELVRYYLTSYPAF-GEKLTEKA------------IGDVFSLLEKLGF 560 (706)
T ss_dssp CSEEEEECEEECCCSS-SCCCEEEEEEEECTTSCEEEEEEEEECSC-TTHHHHHH------------HHHHHHHHHHTTC
T ss_pred ceEEEEEEEeccCCCC-CCceEEEEEEEEcCCCCEEEEEEEecccc-cchHHHHH------------HHHHHHHHHHhcC
Confidence 8999999999997542 369999999999841 3688888876554 78888764 3455666766654
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2.7e-58 Score=533.23 Aligned_cols=532 Identities=12% Similarity=0.074 Sum_probs=366.9
Q ss_pred EEEEEeeEEEEEec-CCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeecCCCc--eeecCCCCC
Q 004699 63 RISLLTNHFKVNVT-NVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKS--LFTVGPLPR 139 (735)
Q Consensus 63 ~i~L~tN~f~v~~~-~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~--l~s~~~L~~ 139 (735)
++.|.+|||+|... .++ .+|||+|+| +|+++.+ .+..++..+.+. + | .++|||. . ||++.+|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeec----CChHHHH-HHHHHHHHHHhh----c-C-cEEecCc-ceeeeccceecc
Confidence 57899999999852 356 899999999 5677766 666777766543 3 5 7999998 6 999988862
Q ss_pred CceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHHHHHH
Q 004699 140 NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVL 219 (735)
Q Consensus 140 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i~~l 219 (735)
++..+.|+++++++++ +|++
T Consensus 70 -----------------------------------------~~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 -----------------------------------------EGEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp -----------------------------------------SSCCEEEEEECGGGSC-------------------HHHH
T ss_pred -----------------------------------------CCCeEEEEEEEcceec-------------------HHHH
Confidence 1335778888777664 7889
Q ss_pred HHHHhccccccc-----ceecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecCCcHHHHHHH
Q 004699 220 DIILRQHAAKQG-----CLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (735)
Q Consensus 220 niilr~~~~~~~-----~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~~l~d~l~~ 294 (735)
|+|+|+.+...+ ...+||+||++ .. -+.+.+|+||.+||+..+++++|++|++|++ .+.+||+|+|.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~-----~~-~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKP-----KT-FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCC-----EE-ETTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHcccchHHHHHHhhhcCCC-----cc-ccccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHH
Confidence 999999998877 77899999987 12 2578999999999999999999999999999 799999999975
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEE--------e--cCceEEEeccCccccccc--ee---ecccCCCCCCCCCccce
Q 004699 295 NQNVRDPFSIDWAKAKRTLKNLRIKTI--------T--SNQEYKITGLSEKLCKEQ--MF---SLKQKNVKDDDGEVQEL 359 (735)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~t~--------~--~nr~~~I~gi~~~~~~~~--~F---~~~~~~~~~~~~~~~~~ 359 (735)
..+ ..+.......|..|.+. | |+++|++++ .++..+.. +| ..+++- .
T Consensus 163 ~~~-------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~----------~ 224 (771)
T 1u04_A 163 DPK-------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYW----------N 224 (771)
T ss_dssp CHH-------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHC----------C
T ss_pred HHH-------HHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCCC----------C
Confidence 431 23456677788888777 7 788898877 66655544 55 543210 1
Q ss_pred eeeHHHHHHHhcCcccccCCCCCeEecCC-------CCCCccccccceeEcCCCcccCCCCHHHHHHHHHHHhcChHHHH
Q 004699 360 EITVYDYFVNNRNIDLRYSGDLPCINVGK-------PKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERM 432 (735)
Q Consensus 360 ~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~-------~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~~P~eR~ 432 (735)
++++.+||.++|++ ++ .+||+|.... ..+.+||.||||.++|. ..+++....++|..+++..|++|.
T Consensus 225 ~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~ 298 (771)
T 1u04_A 225 TPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERK 298 (771)
T ss_dssp SHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHH
T ss_pred CcchhHHHHHhcCc--Cc-CCCCeEEecchhhccCCCCceeeechHhhhhcCc---hhhhhHHHHHHHHHHHCCCHHHHH
Confidence 56777777799995 87 9999998743 12479999999999993 223444555689999999999999
Q ss_pred HHHHHHHHhc-----CC--CCchhhhccCceecCcceeeeeeecCCCeeeeCCCcccCCCCCccc--cCCceeeCCcc--
Q 004699 433 SVLSNALKLS-----KY--DNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWN--FNNKKLVQPTK-- 501 (735)
Q Consensus 433 ~~i~~~~~~~-----~~--~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn--~~~~kf~~p~~-- 501 (735)
+.|.++++++ .- +..+.|+.|| .++.. +.|.++++.+-.+.+++ ...+..++|. +++.+++.+..
T Consensus 299 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p 374 (771)
T 1u04_A 299 ELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVP 374 (771)
T ss_dssp HHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCC
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecC--cCCCccCCcchhhCCCcceecccch
Confidence 9999999998 32 2346777777 58866 88776666654455544 1224568995 67777766553
Q ss_pred --cce------EEEEEeCCcccHHHHH---------HHHHHHhhhcCCc---------CCCCccccccCCcc-c-CCChh
Q 004699 502 --IER------WAVVNFSARCDIRSLV---------RDLIKCGEMKGIL---------IDQPFDVFEESPQF-R-RSSPV 553 (735)
Q Consensus 502 --i~~------W~vv~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~p~~v~~~~~~~-~-~~~~~ 553 (735)
+++ |++++-.....+++|+ +.|.+.++.+|+. +.-|.......+.. . .....
T Consensus 375 ~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~ 454 (771)
T 1u04_A 375 EKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSD 454 (771)
T ss_dssp THHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSH
T ss_pred hhhhcccccceEEEEeCCchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccch
Confidence 444 6666543333677777 4444444333322 33232100000000 0 00113
Q ss_pred HHHHHHHHHHHhhC-CCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecccC-------C-----HHHHHHHHH
Q 004699 554 VRVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-------N-----DQYLTNVLL 620 (735)
Q Consensus 554 ~~ve~~~~~i~~~~-~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~-------~-----~q~~~Ni~l 620 (735)
+.++.+++.+.+.+ ...++|+||+++..++.+.|+.||++| .+.||+||||..++. + .++++||+|
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHH
Confidence 46777888776554 245799877775425678999999998 799999999997532 1 678999999
Q ss_pred HHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccc
Q 004699 621 KINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDS 700 (735)
Q Consensus 621 KIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~ 700 (735)
|||+||||+||.|+. |. .+|||||+||+|+++++ ..+|+||+|+|.|+ ..++|.+.+..|.++ |+++
T Consensus 534 qIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~- 600 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD- 600 (771)
T ss_dssp HHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-
T ss_pred HHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCCC-CceEEEEEEECCCC-CEEEEEEEEeecCCc-cEEc-
Confidence 999999999999952 32 68999999999996553 57899999999997 888998866656654 5554
Q ss_pred cccccCCCcccchHHHHHHHHHhcc
Q 004699 701 LFKKVSDTEDEGIIRLFYCLTYLRW 725 (735)
Q Consensus 701 L~~~~~~~~~~~m~~e~L~~f~~~n 725 (735)
|.. |++++|++|++.|
T Consensus 601 l~~---------~l~~~L~~y~~~n 616 (771)
T 1u04_A 601 MNE---------FFKEMVDKFKEFN 616 (771)
T ss_dssp HHH---------HHHHHHHHHHHTT
T ss_pred HHH---------HHHHHHHHHHHHh
Confidence 653 9999999999984
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=3.4e-47 Score=433.40 Aligned_cols=510 Identities=13% Similarity=0.121 Sum_probs=360.0
Q ss_pred EEEEEeeEEEEE-ecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeecCCCceeecCCCCCC-
Q 004699 63 RISLLTNHFKVN-VTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRN- 140 (735)
Q Consensus 63 ~i~L~tN~f~v~-~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~- 140 (735)
.+.|.-|-|.|. +...+..+|.|+|.+.+.+ .++.-..++.+++.. ++ ...+==|. .|.|-.+ |..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~-~~~~~~~~-~~~~~~~-~~~~ 73 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPP-----GREEVYPLLAQVARR----AG-GVTVRMGD-GLASWSP-PEVL 73 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCC-----CTTTHHHHHHHHHHH----TC-SSEEEETT-EEEESSC-TTTS
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCC-----CcchHHHHHHHHHHH----hC-CeEEeecC-ceecccC-chhh
Confidence 478899999998 4445778999999996422 223334566666653 32 23333344 7777666 432
Q ss_pred ceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHHH----
Q 004699 141 KLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAF---- 216 (735)
Q Consensus 141 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i---- 216 (735)
.+|-+|.- ..++..|.+.-.-...++..+=. ..+|+
T Consensus 74 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 113 (685)
T 3ho1_A 74 VLEGTLAR------------------------------MGQTYAYRLYPKGRRPLDPKDPG----------ERSVLSALA 113 (685)
T ss_dssp CCEEEEEC------------------------------SSCEEEEEEEEEEECCCCTTSHH----------HHHHHHHHH
T ss_pred hccchhcc------------------------------ccCCcceeeeecccccCCCCChH----------HHHHHHHHH
Confidence 12322210 11345577777777777763211 22333
Q ss_pred -HHHHHHHhcccccccceecccccccCCCCCccccCCcEEEeecceEEEEeeC-CeeEEeeecceeeeecCCcHHHHHHH
Q 004699 217 -RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIA 294 (735)
Q Consensus 217 -~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~~~F~~~~~l~d~l~~ 294 (735)
..|+-.|++. .+...-|.-.+... + .-|.|.|+.+|+...|.++. +++.|.||..+.+ +++.++.+++.+
T Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~~~~-~---~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~~ 185 (685)
T 3ho1_A 114 RRLLQERLRRL---EGVWVEGLAVYRRE-H---ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLAQ 185 (685)
T ss_dssp HHHHHHHHHTC---SSSEEETTEEEEEE-E---EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHHH
T ss_pred HHHHHHHHHhh---hceEEccEEEEeec-C---CCCCceEEecceEEEEEECCCCcEEEEEeeheee-cChhhHHHHHHh
Confidence 3445555554 12222233333321 1 22789999999999999997 8999999999996 899999999987
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcc
Q 004699 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID 374 (735)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~ 374 (735)
... |- .+|.++|+.++|+|.+|+ +.+++..|-.. -||++|||+++|.+
T Consensus 186 ~~~---------------~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~~--------------~~s~~~y~~~k~~~- 233 (685)
T 3ho1_A 186 GHP---------------LP-KRVRNAYDRRTWELLRLG-EEDPKELPLPG--------------GLSLLDYHASKGRL- 233 (685)
T ss_dssp SCC---------------CC-SEEEESSSCCEECCCEEE-CCCTTCC--------------------CSTTTTTTTSTT-
T ss_pred CCC---------------cc-HHHhhhcccceEEEeecc-cCCchheecCC--------------CccHHHHHhhcccc-
Confidence 432 34 689999999999999998 56777777532 49999999999988
Q ss_pred cccCCCCCeEec-CCC---CC-----CccccccceeEcCCCcccCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCC
Q 004699 375 LRYSGDLPCINV-GKP---KR-----PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYD 445 (735)
Q Consensus 375 L~~~p~lP~l~v-g~~---~~-----~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~~P~eR~~~i~~~~~~~~~~ 445 (735)
+. -++|.|.. .+. .+ .+||.|||| +++ |++.+++ .+++.+|++|++.+.++++.
T Consensus 234 -~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~-------l~~~~~~---~~trlsP~~R~~~l~~~~~~---- 296 (685)
T 3ho1_A 234 -QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LED-------LHEEEGS---LALSLPWEERRRRTREIASW---- 296 (685)
T ss_dssp -TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTT-------TSSCSSC---CCCCCCHHHHHHHHHHHHHH----
T ss_pred -cc-cCCceEEEEeccccCCCcceeeeeeechHhH-HHH-------Hhhhhhh---ccccCCHHHHHHHHHHHHHH----
Confidence 77 88998864 332 12 468999999 776 5555544 67899999999999999775
Q ss_pred CchhhhccCceecCcceeeeeeecCCCeeeeCCCcccCCCCCccccCCceeeCCcccceEEEEEeCCc-ccHHHHHHHHH
Q 004699 446 NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-CDIRSLVRDLI 524 (735)
Q Consensus 446 ~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~-~~~~~f~~~L~ 524 (735)
+++.|||+ +++|++|+||+||||+| +|+.. + .+.|++.+.+|+.++.. .|+++++... ..++.|++.|.
T Consensus 297 ---i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~ 366 (685)
T 3ho1_A 297 ---IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALL 366 (685)
T ss_dssp ---HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHH
T ss_pred ---HHHhcCCC-CCCcceEEEEEcCHHHh-cCCCC-c---CCchhhccCcceeccCc-eEEEEeccCchHHHHHHHHHHH
Confidence 47889999 99999999999999999 87642 2 23566666677877765 7999988764 36889999999
Q ss_pred HHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeE
Q 004699 525 KCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQC 604 (735)
Q Consensus 525 ~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQc 604 (735)
+.|+.+||+|..|... ..+. ........+++..+ .++|+||||+|+ ++.+.|+.||++| .+.||+|||
T Consensus 367 ~va~~~G~~i~~~~~~--~~~~-----d~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQc 434 (685)
T 3ho1_A 367 RAFGASGASLRLHTLH--AHPS-----QGLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQI 434 (685)
T ss_dssp HHHHSSSSCEEEEECC--CCGG-----GTHHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHHhCCcEeccceee--cCCC-----chHHHHHHHHHhhh---cCCCEEEEEECC-CCccHHHHHHHHH-hcCCCccEE
Confidence 9999999999865322 1111 01123344555443 468999999999 7788999999986 799999999
Q ss_pred eec--ccCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCCCCeEEEEEec--cCCCc
Q 004699 605 MAP--MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSS--RHWPL 680 (735)
Q Consensus 605 i~~--~k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~~pSiaavVaS--~d~p~ 680 (735)
|.. .+.+.++++||+||||+||||+||.|+. |. .+|||||+||+|++. .+++|++++ .|. .
T Consensus 435 V~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg-~ 499 (685)
T 3ho1_A 435 LNVPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDG-G 499 (685)
T ss_dssp EESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC---C
T ss_pred EecccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEECCC-C
Confidence 992 2346788999999999999999999953 43 789999999999862 244443333 353 4
Q ss_pred ccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCcE
Q 004699 681 ISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVV 728 (735)
Q Consensus 681 ~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~~ 728 (735)
.++| +.++.|.+.++.+++|.. |+.++|..|++.|+.+
T Consensus 500 ~~~~-~~~~~Q~~e~l~~~~L~~---------~l~eaL~~Y~k~ng~l 537 (685)
T 3ho1_A 500 HLLW-TLPEAQAGERIPQEVVWD---------LLEETLWAFRRKAGRL 537 (685)
T ss_dssp CCEE-ECCCCCCSCCCHHHHHHH---------HHHHHHHHHHHHHSSC
T ss_pred EEEe-EEEEccCCcEecHHHHHH---------HHHHHHHHHHHHhCCC
Confidence 5554 345667665555677875 9999999999998854
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=4.1e-39 Score=351.71 Aligned_cols=215 Identities=24% Similarity=0.342 Sum_probs=174.7
Q ss_pred cCCceeeC-CcccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhh
Q 004699 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (735)
Q Consensus 491 ~~~~kf~~-p~~i~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~ 566 (735)
+++++|++ ++++++|+++++..+ .+++.|++.|.+.|+.+||.+..|........ +.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHh--HHHHhhcc
Confidence 56789999 689999999999543 37999999999999999999988753211100 11112222 22333221
Q ss_pred CCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHH--HHHHHHHHHhhccCCceeeccccCCCCC
Q 004699 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (735)
Q Consensus 567 ~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q--~~~Ni~lKIN~KLGG~n~~l~~~~~~~i 641 (735)
.+++|||||||+ ++.++|+.||++||+++||+||||..+ +.++| |++||+||||+||||+||.|+. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCeEEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 368999999999 888899999999999999999999975 45788 9999999999999999999964 35
Q ss_pred CcccCCCEEEEeeeeccCC---CC--CCCCCeEEEEEeccCCCcccceeeEEEecC-CceeeccccccccCCCcccchHH
Q 004699 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (735)
Q Consensus 642 p~~~~~~tMIvG~DVsHp~---~~--~~~~pSiaavVaS~d~p~~tky~~~~~~Q~-~~~E~I~~L~~~~~~~~~~~m~~ 715 (735)
|++.+.+|||||+||+||+ || ....|||||||||+|. .+++|.+.+++|. +++|+|++|.+ |++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~~---------~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFTD---------KFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHHH---------HHH
T ss_pred cccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcCC-CCCEEEEEEEEcCCCcccHHHHHHH---------HHH
Confidence 6666789999999999999 87 3468999999999995 9999999999999 99999999986 999
Q ss_pred HHHHHHHh---ccCc
Q 004699 716 LFYCLTYL---RWEV 727 (735)
Q Consensus 716 e~L~~f~~---~n~~ 727 (735)
|+|+.|++ +|+.
T Consensus 220 ~~L~~~~~~~~~~~~ 234 (388)
T 2yha_A 220 TRLELWRSNPANNRS 234 (388)
T ss_dssp HHHHHHHHSGGGTTC
T ss_pred HHHHHHHHhhhhcCC
Confidence 99999999 7764
No 7
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=5.1e-38 Score=347.43 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=174.7
Q ss_pred cCCceeeC-CcccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhh
Q 004699 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (735)
Q Consensus 491 ~~~~kf~~-p~~i~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~ 566 (735)
+++++|++ ++++++|++++++.+ .+++.|++.|.+.|+.+||.+..|........ +.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHH--HHHHhhcc
Confidence 46789999 689999999999532 37999999999999999999988753211100 11112222 22333321
Q ss_pred CCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHH--HHHHHHHHHhhccCCceeeccccCCCCC
Q 004699 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (735)
Q Consensus 567 ~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q--~~~Ni~lKIN~KLGG~n~~l~~~~~~~i 641 (735)
.+++|||||||+ ++.++|+.||++||+++||+||||..+ +.++| |++||+||||+||||+||.|+. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCcEEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 368999999999 888899999999999999999999975 45778 9999999999999999999964 35
Q ss_pred CcccCCCEEEEeeeeccCC---CC--CCCCCeEEEEEeccCCCcccceeeEEEecC-CceeeccccccccCCCcccchHH
Q 004699 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (735)
Q Consensus 642 p~~~~~~tMIvG~DVsHp~---~~--~~~~pSiaavVaS~d~p~~tky~~~~~~Q~-~~~E~I~~L~~~~~~~~~~~m~~ 715 (735)
|++.+.+|||||+||+||+ || ....|||||||||+|. .+++|.+.+++|. +++|+|++|.+ |++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~~---------~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFTD---------KFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHHH---------HHH
T ss_pred cccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecCC-CcCeeeeEEEEcCCcchhHHHHHHH---------HHH
Confidence 6666789999999999999 77 3358999999999995 8999999999999 99999999986 999
Q ss_pred HHHHHHHh---ccCcE
Q 004699 716 LFYCLTYL---RWEVV 728 (735)
Q Consensus 716 e~L~~f~~---~n~~~ 728 (735)
++|+.|++ +|+.+
T Consensus 220 ~~L~~~~~~~~~~~~~ 235 (437)
T 2yhb_A 220 TRLELWRSNPANNRSL 235 (437)
T ss_dssp HHHHHHHTCGGGTTCC
T ss_pred HHHHHHHhhhhhcCCC
Confidence 99999999 66643
No 8
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.94 E-value=9.2e-28 Score=225.89 Aligned_cols=130 Identities=19% Similarity=0.366 Sum_probs=91.8
Q ss_pred ecCCcHHHHHHHhcCCC---CCC--chhHHHHHHHhcCcEEEEEe------cCceEEEeccCccccccceeecccCCCCC
Q 004699 283 IQPGPVVDFLIANQNVR---DPF--SIDWAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKD 351 (735)
Q Consensus 283 ~~~~~l~d~l~~~~~~~---~~~--~~~~~~~~~~Lkgl~V~t~~------~nr~~~I~gi~~~~~~~~~F~~~~~~~~~ 351 (735)
+++++|+|||.++.+.. +.. +.++.+++++|+|++|.++| ++|+|+|.||++.++++++|+.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCC-----
Confidence 57899999999976321 111 22455789999999999999 679999999999999999997631
Q ss_pred CCCCccceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHHHHHHHHHhc
Q 004699 352 DDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQ 426 (735)
Q Consensus 352 ~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~ 426 (735)
.+|||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+|+++|++.|+++||++|++
T Consensus 77 -------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 77 -------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp -------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC----------------------
T ss_pred -------CEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 489999999988 999999 999999999988999999999999999999999999999999999986
No 9
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=9.6e-27 Score=218.13 Aligned_cols=132 Identities=34% Similarity=0.554 Sum_probs=112.2
Q ss_pred CceeeCCcccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCC
Q 004699 493 NKKLVQPTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPG 569 (735)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~ 569 (735)
+++|++|+++++|++++|+++ .++++|++.|.+.|+.+||.+.+|..+.... ...++++.+++++.+.+ .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~------~~~~~~e~~l~~~~~~~-~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFIS------CPPEHIEEALLDIHKRA-P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEE------CCGGGHHHHHHHHHHHC-T
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeec------CCchhHHHHHHHHHHhc-C
Confidence 579999999999999999643 3799999999999999999998775332110 11366788888888866 4
Q ss_pred CCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeec
Q 004699 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (735)
Q Consensus 570 ~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l 633 (735)
+++|+|||||+ ++.+ |+.||++||+++||+||||..+ +.++||++||+||||+||||+||.|
T Consensus 75 ~~qlv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 68999999999 7777 9999999999999999999984 5689999999999999999999975
No 10
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.93 E-value=5.1e-26 Score=215.41 Aligned_cols=138 Identities=30% Similarity=0.523 Sum_probs=110.0
Q ss_pred CceeeCCcccceEEEEEeCCcc---cHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhC--
Q 004699 493 NKKLVQPTKIERWAVVNFSARC---DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL-- 567 (735)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~~---~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~-- 567 (735)
+++|++|+++++|+++++++.. .++.|++.|.+.|+.+||.+.+|..+.... .+....+..++..++++.+.+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 79 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVS--ARPEQVEKVLKTRYHDATSKLSQ 79 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEE--CCGGGHHHHHHHHHHHHHHTSST
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccC--CChHHHHHHHHHHHHHHHhhccc
Confidence 5789999999999999998653 588899999999999999998876533211 001111233444445554433
Q ss_pred CCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeec
Q 004699 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (735)
Q Consensus 568 ~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l 633 (735)
..+++|||||||+ +++++|+.||++||+++||+||||..+ +.++||++||+||||+||||+||.|
T Consensus 80 ~~~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 80 GKEIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp TCCCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 2568999999999 888999999999999999999999985 4689999999999999999999975
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.92 E-value=6.5e-26 Score=215.41 Aligned_cols=139 Identities=28% Similarity=0.434 Sum_probs=99.1
Q ss_pred CceeeCCcccceEEEEEeCCc----ccHHHHHHHHHHHhhhcCCcCCCCccccccCCc-ccCC-ChhHHHHHHHHHHHhh
Q 004699 493 NKKLVQPTKIERWAVVNFSAR----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQ-FRRS-SPVVRVEKMFDEIQSK 566 (735)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~----~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~-~~~~-~~~~~ve~~~~~i~~~ 566 (735)
+++|++|+++++|++++|+++ .++++|++.|.+.|+.+||.+++|..+...... ..+. ..+..++.++++++++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 578999999999999999764 278899999999999999999988754321110 1111 1123466677777766
Q ss_pred CC-CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeec
Q 004699 567 LP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (735)
Q Consensus 567 ~~-~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l 633 (735)
.+ ..|+|+|||||+ ++ +.|+.||++||+++||+||||..+ +.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 54 367999999999 66 459999999999999999999974 5789999999999999999999975
No 12
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.92 E-value=2.8e-26 Score=217.42 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=94.7
Q ss_pred cCCcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeH
Q 004699 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (735)
Q Consensus 284 ~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV 363 (735)
+++||+|+|.+..+.. .....+.++++.|+|++|.|.|+||+|+|+||+++++++++|+.+++ .++||
T Consensus 1 r~~tvld~~~~~~~~~-~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g-----------~~~T~ 68 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQT-EEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----------SEVSF 68 (150)
T ss_dssp CCCBHHHHHHHHHHHS-CHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSS-----------CCCCH
T ss_pred CCccHHHHHHHHHccc-cchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCC-----------ceeeH
Confidence 5789999998865321 11224678999999999999999999999999999999999986432 47999
Q ss_pred HHHHHHhcCcccccCCCCCeEecCCCC---------CCccccccceeEcCCCcccCCCCHHHHHH------HHHHHhcCh
Q 004699 364 YDYFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRAS------LVEKSRQKP 428 (735)
Q Consensus 364 ~eYf~~~Y~i~L~~~p~lP~l~vg~~~---------~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~------mi~~s~~~P 428 (735)
+|||+++||++|+| |+||||.+|..+ +++|||||||.++| |+++|+++ |+++|+++|
T Consensus 69 ~eYf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~~~t~~~P 140 (150)
T 2xfm_A 69 LEYYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLAVHTRLTP 140 (150)
T ss_dssp HHHHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC--------------------
T ss_pred HHHHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHHHHHccCH
Confidence 99999999999999 999999997642 67999999999996 79999884 899999999
Q ss_pred HHHHHHHHHH
Q 004699 429 QERMSVLSNA 438 (735)
Q Consensus 429 ~eR~~~i~~~ 438 (735)
++|++.|.++
T Consensus 141 ~~R~~~i~~f 150 (150)
T 2xfm_A 141 EQRQREVGRL 150 (150)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 13
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.92 E-value=1.4e-25 Score=210.17 Aligned_cols=129 Identities=29% Similarity=0.474 Sum_probs=107.8
Q ss_pred CceeeCCcccceEEEEEeCCc-----ccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhC
Q 004699 493 NKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL 567 (735)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~-----~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~ 567 (735)
+++|++|+++++|++++|+.+ ..+++|++.|.+.|+.+||.+.+|..+... .+..++++.+|+++++..
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~------~~~~~~v~~~~~~l~~~~ 75 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKY------AQGADSVEPMFRHLKNTY 75 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEE------CCSGGGHHHHHHHHHHHC
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeec------CCcHHHHHHHHHHHHhcC
Confidence 678999999999999998742 268999999999999999999864432221 112467899999998865
Q ss_pred CCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCce
Q 004699 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLN 630 (735)
Q Consensus 568 ~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n 630 (735)
.+++|||||||+ ++++|+.||++||+++||+||||+.+ +.++||++||+||||+||||+|
T Consensus 76 -~~~qlv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 76 -AGLQLVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp -TTCCEEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred -CCCcEEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 468999999997 46899999999999999999999874 5689999999999999999987
No 14
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.91 E-value=2.6e-25 Score=208.80 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=90.3
Q ss_pred cCCcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeH
Q 004699 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (735)
Q Consensus 284 ~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV 363 (735)
|..||+|+|.+.... + ....+.++++.|+|++|.|.|+|++|+|+||+|+.++.++|+.+++ .++||
T Consensus 1 r~~tvld~m~~~~~~-~-~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----------~~iT~ 67 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQ-N-KEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----------KEITF 67 (148)
T ss_dssp -CCCHHHHHHHHHHH-H-HHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTS-----------CEEEH
T ss_pred CcchHHHHHHHHHhh-C-cHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCC-----------CcccH
Confidence 467999999886421 1 1225678999999999999999999999999999999999987543 48999
Q ss_pred HHHHHHhcCcccccCCCCCeEecCCCC----------CCccccccceeEcCCCcccCCCCHHHHH------HHHHHHhcC
Q 004699 364 YDYFVNNRNIDLRYSGDLPCINVGKPK----------RPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQK 427 (735)
Q Consensus 364 ~eYf~~~Y~i~L~~~p~lP~l~vg~~~----------~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~------~mi~~s~~~ 427 (735)
+|||+++|||+|+| ++||||.++.++ +++|||||||.++| |+++||+ +|++++++.
T Consensus 68 ~eYf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l~~~tr~~ 139 (148)
T 3qir_A 68 LEYYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDLAQQINLS 139 (148)
T ss_dssp HHHHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC------------------------------
T ss_pred HHHHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHHHHHHCCC
Confidence 99999999999999 999999997542 57999999999997 7888887 799999999
Q ss_pred hHHHHHHHH
Q 004699 428 PQERMSVLS 436 (735)
Q Consensus 428 P~eR~~~i~ 436 (735)
|++|++.|+
T Consensus 140 P~~R~~~l~ 148 (148)
T 3qir_A 140 PKQHHSALE 148 (148)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 999998663
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.89 E-value=9e-24 Score=192.87 Aligned_cols=113 Identities=20% Similarity=0.423 Sum_probs=92.5
Q ss_pred cCCcHHHHHHHhcCCCC-----CCchhHHHHHHHhcCcEEEEEe------cCceEEEeccCccccccceeecccCCCCCC
Q 004699 284 QPGPVVDFLIANQNVRD-----PFSIDWAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKDD 352 (735)
Q Consensus 284 ~~~~l~d~l~~~~~~~~-----~~~~~~~~~~~~Lkgl~V~t~~------~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~ 352 (735)
++++|+|||.+.....+ .-+.++.+++++|+|++|.++| ++|+|+|.||++.++++++|..+ +
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~-g----- 74 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-G----- 74 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS-S-----
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC-C-----
Confidence 46899999999653211 1134678999999999999998 45899999999999999999863 1
Q ss_pred CCCccceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccC
Q 004699 353 DGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK 410 (735)
Q Consensus 353 ~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~ 410 (735)
.+|||+|||+++ |++|+| |+||||++|+.++++|||||||.|++||++++
T Consensus 75 ------~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 75 ------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp ------SEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred ------cEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 489999999997 999999 99999999998899999999999999999864
No 16
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.87 E-value=1.9e-22 Score=183.39 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=92.7
Q ss_pred CcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHH
Q 004699 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (735)
Q Consensus 286 ~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~e 365 (735)
+||+|+|.++.+..+ ....+.++++.|+|+.|.|.|+|+.|+|.||+|+.++.++|+.+++ .++||+|
T Consensus 2 ~tvld~~~~~~~~~~-~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----------~~~T~~e 69 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTE-EHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----------SEVSFLE 69 (124)
T ss_dssp CBHHHHHHHSCCCSS-HHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTS-----------CEEEHHH
T ss_pred ccHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCC-----------CeeeHHH
Confidence 689999998764311 1235678999999999999999999999999999999999986542 4899999
Q ss_pred HHHHhcCcccccCCCCCeEecCCCC---------CCccccccceeEcCCCcccCCCCHHHHHH
Q 004699 366 YFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRAS 419 (735)
Q Consensus 366 Yf~~~Y~i~L~~~p~lP~l~vg~~~---------~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~ 419 (735)
||+++|||+|++ |+||||.++.++ +++|||||||.++| |++++|++
T Consensus 70 Yyk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~d 124 (124)
T 3o7v_X 70 YYRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRND 124 (124)
T ss_dssp HHHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC------
T ss_pred HHHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhccC
Confidence 999999999999 999999997432 67999999999998 79988763
No 17
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.82 E-value=6.8e-22 Score=218.56 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=133.4
Q ss_pred ecCCCeeeeC--CCcccC------CCCCccccCCceeeCCcc--cceEEEEEeCCcccHHHHHHHHHHHhh---hcCCcC
Q 004699 468 VLPAPRLKFG--NGEDFS------PRNGRWNFNNKKLVQPTK--IERWAVVNFSARCDIRSLVRDLIKCGE---MKGILI 534 (735)
Q Consensus 468 vL~~P~i~~g--~~~~~~------~~~g~Wn~~~~kf~~p~~--i~~W~vv~~~~~~~~~~f~~~L~~~~~---~~G~~i 534 (735)
.|..|.+.|+ +|..++ +..| +.+...+.... -.+|+|++..+..+ |++.|.+... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcccHH---HHHHHHHhhhhcCCCceee
Confidence 4667788888 555322 2111 22223333322 27899997665433 6666655432 245555
Q ss_pred CCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEc--------CCCCCCCchhhhhhhcccccCceeeEee
Q 004699 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL--------PERKNSDLYGPWKRKNLADFGIVTQCMA 606 (735)
Q Consensus 535 ~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Il--------p~~k~~~~Y~~iK~~~~~~~GI~TQci~ 606 (735)
..+... ...+. +.+ .+.+++ +++++|||+ |+ ++.+.|. +|+ ++.+.||+||||.
T Consensus 79 ~~~~~~---~~~y~-----~~i---~~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I~ 140 (427)
T 2w42_A 79 HNINIS---EFIYD-----SPH---FDSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFMR 140 (427)
T ss_dssp CSCEEE---EEECS-----SSS---HHHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEEE
T ss_pred cCCcCC---hHHHH-----HHH---HHHhcC----CCCEEEEEEEccccccCCC-CCcchHH-HHH-HHhCCCcCcEEEE
Confidence 444211 00111 112 223333 368999999 65 4445555 785 6679999999999
Q ss_pred cccC---CHHH-HHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCCCCeEEEE--EeccCCCc
Q 004699 607 PMRV---NDQY-LTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAV--VSSRHWPL 680 (735)
Q Consensus 607 ~~k~---~~q~-~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~~pSiaav--VaS~d~p~ 680 (735)
.++. +.++ ++||+||||+||||+||.|+.. .|. .+|||||+||+|++++ +++|+ |++.|. .
T Consensus 141 ~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~~g-~ 207 (427)
T 2w42_A 141 YDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKKDG-T 207 (427)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECTTS-C
T ss_pred hhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEcCCC-C
Confidence 8653 4444 8999999999999999999631 122 5799999999999764 66666 445553 3
Q ss_pred ccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHh-ccCc
Q 004699 681 ISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYL-RWEV 727 (735)
Q Consensus 681 ~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~-~n~~ 727 (735)
-+.+.+..|.+++|++++|.. |+.++|++|++ +|+.
T Consensus 208 --~~~~~~~~~~~~~E~~~~l~~---------~l~~aL~~y~~~~~~~ 244 (427)
T 2w42_A 208 --MLWNEISPIVTSSEYLTYLKS---------TIKKVVYGFKKSNPDW 244 (427)
T ss_dssp --EEEEEECCCEEGGGHHHHHHH---------HHHHHHHHHHHHCTTC
T ss_pred --EEEEEEEecCChhHHHHHHHH---------HHHHHHHHHHHHhcCC
Confidence 344455666788999999986 99999999999 7775
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.82 E-value=6.2e-21 Score=217.53 Aligned_cols=124 Identities=22% Similarity=0.475 Sum_probs=101.4
Q ss_pred ecceeeeecCCcHHHHHHHhc---CCCCCCchhHHH--HHHHhcCcEEEEEe------cCceEEEeccCccccccceeec
Q 004699 276 DVSTTMIIQPGPVVDFLIANQ---NVRDPFSIDWAK--AKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSL 344 (735)
Q Consensus 276 Dvs~~~F~~~~~l~d~l~~~~---~~~~~~~~~~~~--~~~~Lkgl~V~t~~------~nr~~~I~gi~~~~~~~~~F~~ 344 (735)
+...+.|+++++|+|++.++. +.++++..++.+ ++++||||+|.++| .+|.|+|.||+..+|.+++|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 445667899999999999854 455666667665 99999999999999 4688999999999999999987
Q ss_pred ccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccCCCC
Q 004699 345 KQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413 (735)
Q Consensus 345 ~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls 413 (735)
++ ++|||+|||+ +||++|+| |+||||++|++++++|||||||.|+++|||+++||
T Consensus 455 ~~------------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG------------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT------------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC------------eEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 42 5899999999 89999999 99999999999899999999999999999999886
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.81 E-value=2e-09 Score=125.83 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=73.1
Q ss_pred HHHHHhcCcEEEEEecC-ceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCCeEec
Q 004699 308 KAKRTLKNLRIKTITSN-QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (735)
Q Consensus 308 ~~~~~Lkgl~V~t~~~n-r~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~v 386 (735)
.+.+.|+|..|.|.|+| |+|+|.+|+++.++.++|+.++ ..+|+.|||+++||++|++ ++||+|.+
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~------------~~~Ty~dYYk~ky~i~I~d-~~QPLL~~ 217 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN------------ESITYMRYYATAHNIHLRA-ADLPLVAA 217 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT------------EEEEHHHHHHHTTCCCCSC-TTSEEEEE
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC------------CCCCHHHHHHHHcCccccc-CCCCeEEE
Confidence 45678999999999999 9999999999999999998542 4899999999999999999 99999986
Q ss_pred CC------------------CCCCccccccceeEcCC
Q 004699 387 GK------------------PKRPTYIPLELCELVSL 405 (735)
Q Consensus 387 g~------------------~~~~~ylP~Elc~v~~~ 405 (735)
.. ..+.++||||||.++|.
T Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~~~v~L~PELC~vt~L 254 (756)
T 2qvw_A 218 VRLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLPD 254 (756)
T ss_dssp EETTTTTTCCCCSTTC-CCSCSSCEEECTTTCEECCT
T ss_pred EecccccccccccccccccCCccceeeCHHHheeecC
Confidence 32 11247999999999984
No 20
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=43.91 E-value=25 Score=36.12 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=46.6
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 560 ~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
++.++++....|.|.+++.-+...+..|-..|...+.+.||.+..+.. ......-+-+.+.++|.-
T Consensus 43 v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 43 VEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Confidence 344554434568888887766456788999999888899999988875 344555566667777753
No 21
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=32.83 E-value=59 Score=33.32 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCC-CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh--ccCCcee
Q 004699 556 VEKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNS 631 (735)
Q Consensus 556 ve~~~~~i~~~~~-~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~--KLGG~n~ 631 (735)
+..-+++++++.. ..|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|. ..-|+..
T Consensus 22 ~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlV 101 (300)
T 4a26_A 22 LKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIV 101 (300)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 3334455555533 468898888876456789999999999999999988875 34455556777788885 4667665
Q ss_pred ec
Q 004699 632 LL 633 (735)
Q Consensus 632 ~l 633 (735)
.+
T Consensus 102 ql 103 (300)
T 4a26_A 102 QL 103 (300)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 22
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=31.40 E-value=61 Score=33.23 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhC-CCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 556 VEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 556 ve~~~~~i~~~~-~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
+..-++.++++. ...|.|.++..-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|.-
T Consensus 20 ~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 20 LKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 333445555543 1348898888877557789999999999999999988875 344555566777888753
No 23
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=30.63 E-value=68 Score=32.63 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=52.6
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh--ccCCceeec
Q 004699 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNSLL 633 (735)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~--KLGG~n~~l 633 (735)
.-+++++++....|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|. ..-|+...+
T Consensus 23 ~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVql 101 (286)
T 4a5o_A 23 QRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQL 101 (286)
T ss_dssp HHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcC
Confidence 33444554433458898888876456788999999999999999988775 34455556777788886 456765443
No 24
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.28 E-value=62 Score=32.97 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
+...+++++++....|.|.++..-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|.-
T Consensus 19 ~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 19 VAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3334455554422348898888876456789999999999999999988765 344555566677888754
No 25
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=27.66 E-value=75 Score=32.23 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc
Q 004699 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (735)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K 625 (735)
...++.++++ ...|.|.++..-+...+..|-..|...+.+.||.+..+.. ......-+-+.+.++|.-
T Consensus 20 ~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 20 KQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3334445444 2348888888766456788999999888899999988865 344555566677777754
No 26
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=26.39 E-value=70 Score=32.52 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=52.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhhc--cCCceeec
Q 004699 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNSLL 633 (735)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~K--LGG~n~~l 633 (735)
-++.++++....|.|.++..-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|.- .-|++-.+
T Consensus 23 ~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 100 (285)
T 3l07_A 23 QVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQL 100 (285)
T ss_dssp HHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 3444544322358888888876456788999999999999999988775 344555567777888864 66776543
No 27
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=25.10 E-value=84 Score=31.93 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCCHHHHHHHHHHHhh--ccCCceeec
Q 004699 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNSLL 633 (735)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKIN~--KLGG~n~~l 633 (735)
.-+++++++. ..|.|.++..-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|. +.-|++..+
T Consensus 22 ~~v~~l~~~~-~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 99 (285)
T 3p2o_A 22 EKNQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQL 99 (285)
T ss_dssp HHHHHHHTTT-CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred HHHHHHHhcC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecC
Confidence 3344454432 368888888766456788999999999999999988765 34455556777778885 566776543
No 28
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=21.07 E-value=95 Score=32.10 Aligned_cols=67 Identities=13% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhCC-CCCeEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecccCCHHHHHHHHHHHhh
Q 004699 556 VEKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINA 624 (735)
Q Consensus 556 ve~~~~~i~~~~~-~~~~~vl~Ilp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni~lKIN~ 624 (735)
+...++.++++.. ..|.|++++..++..+..|-..|...+.+.||.+..+..... .-+-+.+.++|.
T Consensus 21 ~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~l~~~i~~lN~ 88 (320)
T 1edz_A 21 IINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK--DFLEEAIIQANG 88 (320)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG--GGHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh--HHHHHHHHHHcC
Confidence 3334445554422 247888888766456788999999888899999887765322 334556677774
Done!