BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004700
(735 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 278/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ NY+YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 277/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 277/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 277/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ NY+YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQ F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQAIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 277/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 118 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 173
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 174 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 230
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 231 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 289
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 290 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 349
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 350 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 409
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 410 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 464
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 465 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 524
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 525 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 583
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 345 bits (886), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 277/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 276/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N F GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 276/480 (57%), Gaps = 15/480 (3%)
Query: 226 EAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGI 285
+A+ R + D+ V V G + A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 286 YVLVDMQNMVVIEFEDRKLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRV 345
VD+ + V D + P+P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 346 NG-YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPH 404
G ++W+KW+ +GF REG+V++++A+ DG R R + +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 405 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM 464
+N F GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED G+
Sbjct: 292 SWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 465 LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL 524
L KH D +G RR+RR+ +SF T+ N +YGFYW+ Y DG IE E K TGV+ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 525 QPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584
G S + +AP L AP HQH F AR+DM +D N+V E DV + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDGFT----NRVEEEDVVRQTMGPGNER 466
Query: 585 NNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP 644
NAF + T+L E +A+R+ + T R WI+ N + NR + GYKL + LA P
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 645 DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
+++ RRAAF +LWVT YA DE +P G+F NQ+ G GLP+++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 210/651 (32%), Positives = 327/651 (50%), Gaps = 79/651 (12%)
Query: 78 SHPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPF 135
+HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 6 AHPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY----- 48
Query: 136 QPSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS 195
+ + +GGP LPPR A V+ +V+L+ + V+
Sbjct: 49 ---IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIE 89
Query: 196 SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDAD 253
+R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 90 TRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERW 148
Query: 254 APSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + +
Sbjct: 149 GTGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRR 196
Query: 314 RNYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTP 363
R ++ + + G R + P+ + QPEG SF++ G ++W + F IGF
Sbjct: 197 RKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNY 256
Query: 364 REGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHS 423
REG+V+ V+Y D R + HR+S EM+VPYG P PH RK+A D GE G G +
Sbjct: 257 REGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNP 315
Query: 424 LKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRS 481
L GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 316 LSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRA 375
Query: 482 RRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSL 540
+L VS I T ANYEY YW F QDG I +++LTG+L+ L E+ +GT + P++
Sbjct: 376 TKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNV 435
Query: 541 YAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGS--NVHNNAFYAEETLLKS 597
A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 436 NAHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKT 491
Query: 598 EMQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFL 655
++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 492 VKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWA 550
Query: 656 KHNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 551 SHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 601
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 210/650 (32%), Positives = 326/650 (50%), Gaps = 79/650 (12%)
Query: 79 HPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQ 136
HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY------ 64
Query: 137 PSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSS 196
+ + +GGP LPPR A V+ +V+L+ + V+ +
Sbjct: 65 --IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIET 106
Query: 197 RVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDADA 254
R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 107 RALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWG 165
Query: 255 PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLR 314
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + + R
Sbjct: 166 TGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRRR 213
Query: 315 NYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPR 364
++ + + G R + P+ + QPEG SF++ G ++W + F IGF R
Sbjct: 214 KVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 273
Query: 365 EGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSL 424
EG+V+ V+Y D R + HR+S EM+VPYG P PH RK+A D GE G G + L
Sbjct: 274 EGIVLSDVSYNDHG-NVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPL 332
Query: 425 KKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRSR 482
GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 333 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 392
Query: 483 RLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSLY 541
+L VS I T ANYEY YW F QDG I +++LTG+L+ L E+ +GT + P++
Sbjct: 393 KLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVN 452
Query: 542 APVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVE-KPGGS--NVHNNAFYAEETLLKSE 598
A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 453 AHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTV 508
Query: 599 MQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLK 656
++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 509 KDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWAS 567
Query: 657 HNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 568 HSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 617
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 298 bits (762), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 209/651 (32%), Positives = 326/651 (50%), Gaps = 79/651 (12%)
Query: 78 SHPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPF 135
+HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 5 AHPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY----- 47
Query: 136 QPSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS 195
+ + +GGP LPPR A V+ +V+L+ + V+
Sbjct: 48 ---IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIE 88
Query: 196 SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDAD 253
+R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 89 TRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERW 147
Query: 254 APSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + +
Sbjct: 148 GTGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRR 195
Query: 314 RNYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTP 363
R ++ + + G R + P+ + QPEG SF++ G ++W + F IGF
Sbjct: 196 RKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNY 255
Query: 364 REGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHS 423
REG+V+ V+Y D R + HR+S EM+VPYG P PH RK+A D GE G G +
Sbjct: 256 REGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNP 314
Query: 424 LKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRS 481
L GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 315 LSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRA 374
Query: 482 RRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSL 540
+L VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P++
Sbjct: 375 TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNV 434
Query: 541 YAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGS--NVHNNAFYAEETLLKS 597
A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 435 NAHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKT 490
Query: 598 EMQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFL 655
++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 491 VKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWA 549
Query: 656 KHNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 550 SHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 600
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 208/650 (32%), Positives = 324/650 (49%), Gaps = 79/650 (12%)
Query: 79 HPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQ 136
HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY------ 64
Query: 137 PSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSS 196
+ + +GGP LPPR A V+ +V+L+ + V+ +
Sbjct: 65 --IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIET 106
Query: 197 RVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDADA 254
R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 107 RALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWG 165
Query: 255 PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLR 314
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + + R
Sbjct: 166 TGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRRR 213
Query: 315 NYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPR 364
++ + + G R + P+ + QPEG SF++ G ++W + F IGF R
Sbjct: 214 KVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 273
Query: 365 EGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSL 424
EG+V+ V+Y D R + HR+S EM+VP G P PH RK+A D GE G G + L
Sbjct: 274 EGIVLSDVSYNDHG-NVRPIFHRISLSEMIVPAGSPEFPHQRKHALDIGEYGAGYMTNPL 332
Query: 425 KKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRSR 482
GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 333 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 392
Query: 483 RLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSLY 541
+L VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P++
Sbjct: 393 KLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVN 452
Query: 542 APVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVE-KPGGS--NVHNNAFYAEETLLKSE 598
A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 453 AHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTV 508
Query: 599 MQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLK 656
++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 509 KDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWAS 567
Query: 657 HNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 568 HSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 617
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 208/652 (31%), Positives = 326/652 (50%), Gaps = 80/652 (12%)
Query: 78 SHPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPF 135
+HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 5 AHPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY----- 47
Query: 136 QPSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS 195
+ + +GGP LPPR A V+ +V+L+ + V+
Sbjct: 48 ---IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIE 88
Query: 196 SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDAD 253
+R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 89 TRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERW 147
Query: 254 APSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + +
Sbjct: 148 GTGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRR 195
Query: 314 RNYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTP 363
R ++ + + G R + P+ + QPEG SF++ G ++W + F IGF
Sbjct: 196 RKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNY 255
Query: 364 REGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHS 423
REG+V+ V+Y D R + HR+S EM+VP+G P PH RK+A D GE G G +
Sbjct: 256 REGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNP 314
Query: 424 LKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRS 481
L GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 315 LSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRA 374
Query: 482 RRLTVSFICTVAN-YEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPS 539
+L VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P+
Sbjct: 375 TKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPN 434
Query: 540 LYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGS--NVHNNAFYAEETLLK 596
+ A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K
Sbjct: 435 VNAHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFK 490
Query: 597 SEMQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAF 654
+ ++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 491 TVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPW 549
Query: 655 LKHNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 550 ASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 601
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 207/648 (31%), Positives = 323/648 (49%), Gaps = 79/648 (12%)
Query: 81 LDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
LDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY-------- 52
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
+ + +GGP LPPR A V+ +V+L+ + V+ +R
Sbjct: 53 IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRA 96
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDADAPS 256
+ +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 97 LETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTG 155
Query: 257 RRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + + R
Sbjct: 156 KRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRRRKV 203
Query: 317 TRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREG 366
++ + + G R + P+ + QPEG SF++ G ++W + F IGF REG
Sbjct: 204 SKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREG 263
Query: 367 LVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKK 426
+V+ V+Y D R + HR+S EM+VPYG P PH RK+A D GE G G + L
Sbjct: 264 IVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSL 322
Query: 427 GCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRSRRL 484
GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+ +L
Sbjct: 323 GCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKL 382
Query: 485 TVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSLYAP 543
VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P++ A
Sbjct: 383 VVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAH 442
Query: 544 VHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVE-KPGGS--NVHNNAFYAEETLLKSEMQ 600
HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 443 NHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKD 498
Query: 601 AMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLKHN 658
++ + T R W + N VN +G+ YKLV + C PL + + V +RA + H+
Sbjct: 499 SLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHS 557
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
+ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 558 VNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 605
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 291 bits (746), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 208/652 (31%), Positives = 326/652 (50%), Gaps = 80/652 (12%)
Query: 78 SHPLDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPF 135
+HPLDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 8 AHPLDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY----- 50
Query: 136 QPSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS 195
+ + +GGP LPPR A V+ +V+L+ + V+
Sbjct: 51 ---IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIE 91
Query: 196 SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDAD 253
+R + +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 92 TRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERW 150
Query: 254 APSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + +
Sbjct: 151 GTGKRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRR 198
Query: 314 RNYTRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTP 363
R ++ + + G R + P+ + QPEG SF++ G ++W + F IGF
Sbjct: 199 RKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNY 258
Query: 364 REGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHS 423
REG+V+ V+Y D R + HR+S EM+VP+G P PH RK+A D GE G G +
Sbjct: 259 REGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNP 317
Query: 424 LKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRS 481
L GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+
Sbjct: 318 LSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRA 377
Query: 482 RRLTVSFICTVAN-YEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPS 539
+L VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P+
Sbjct: 378 TKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPN 437
Query: 540 LYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGS--NVHNNAFYAEETLLK 596
+ A HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K
Sbjct: 438 VNAHNHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFK 493
Query: 597 SEMQAMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAF 654
+ ++ + T R W + N VN +G+ YKLV + C PL + + V +RA +
Sbjct: 494 TVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPW 552
Query: 655 LKHNLWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
H++ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 553 ASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 604
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 291 bits (746), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 207/648 (31%), Positives = 323/648 (49%), Gaps = 79/648 (12%)
Query: 81 LDPLSPAEISVAVATVRA--AGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
LDPLS AEI A TV++ AG + F V L EP + AY
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAG------KKISFNTVTLREPARK------AY-------- 52
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
+ + +GGP LPPR A V+ +V+L+ + V+ +R
Sbjct: 53 IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRA 96
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI--EDMDLVMVDAWCVGYYSDADAPS 256
+ +QP + E+ E ++ P E GI +M V D W +GY +
Sbjct: 97 LETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTG 155
Query: 257 RRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316
+RL + L++ R++ D ++ Y+ P++ +++ E++K++ + + R
Sbjct: 156 KRLQQALVYYRSDED---DSQYSHPLDFC---------PIVDTEEKKVIFIDIPNRRRKV 203
Query: 317 TRGE----------TRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREG 366
++ + + G R + P+ + QPEG SF++ G ++W + F IGF REG
Sbjct: 204 SKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREG 263
Query: 367 LVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKK 426
+V+ V+Y D R + HR+S EM+VPYG P PH RK+A D GE G G + L
Sbjct: 264 IVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSL 322
Query: 427 GCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAE--VRRSRRL 484
GCDC G I Y DAHF++ G T++N VC+HEED G+L+KH D+R FA V R+ +L
Sbjct: 323 GCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKL 382
Query: 485 TVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGAL-QPGESRKYGTMIAPSLYAP 543
VS I T AN EY YW F QDG I +++LTG+L+ L E+ +GT + P++ A
Sbjct: 383 VVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAH 442
Query: 544 VHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVE-KPGGS--NVHNNAFYAEETLLKSEMQ 600
HQH F R+D +D G+ N D K P GS N++ NAFY+E+T K+
Sbjct: 443 NHQHLFSLRIDPRID---GDG-NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKD 498
Query: 601 AMRDCNPLTARHWIVRNTRTVN-RTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLKHN 658
++ + T R W + N VN +G+ YKLV + C PL + + V +RA + H+
Sbjct: 499 SLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHS 557
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQ-NRPLEESDIVLW 704
+ V Y + ++P G+ Q G G+ W+ + ++ +DI+ +
Sbjct: 558 VNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFF 605
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/642 (30%), Positives = 297/642 (46%), Gaps = 70/642 (10%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEP-DKNVVALADAYFFPPFQP 137
HP DP+S AE+ + ++ A PE F+++ ++P K+++ +A
Sbjct: 2 HPYDPISDAELQLTSQLIKDATKGPE---RPHFIQIDRLDPPKKDMIRYLEA-------- 50
Query: 138 SLLPRTKGGPVIPSKLPPRRARLV-VYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSS 196
G P+ P +R+ VY + +V +S H +T +G +
Sbjct: 51 ----ERTGKPL------PHISRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVI--- 97
Query: 197 RVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPS 256
P+ AE+ + E P K ++K + V+ D W G S D
Sbjct: 98 -------GPLIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKED--- 147
Query: 257 RRLAKPLIFCRTESDCPMENGYARPVE---------GIYVLVDM----QNMVVIEFEDRK 303
R L + ++ + + P N Y+ P++ +V +D + V E +
Sbjct: 148 RMLIQCYMYLASAAH-PESNHYSLPLKFSPVFECLTKKFVRMDYLPGGADETVTETQAWD 206
Query: 304 LVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTP 363
P P N GET +KPL + QPEGPSF V+G+ + WQ W F + T
Sbjct: 207 EFPFVEYHPDLN---GET-----IVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTV 258
Query: 364 REGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHS 423
REG IY + + +G RSV +RLS EM VPYGDP P +RK AFD G+ G G +S
Sbjct: 259 REGFAIYDIHF----KG-RSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNS 313
Query: 424 LKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR 483
L GCDCLG IKY D N G I N VCLHE+D G+L+KH ++RT + R R
Sbjct: 314 LALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYKHTNYRTNVPVIARRRE 373
Query: 484 LTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAP 543
V I TVAN EY F Q G+I V+ TG+LS L + +GT + P + A
Sbjct: 374 FVVQTIATVANXEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAA 433
Query: 544 VHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMR 603
HQH R+D VD G V + +++EK N +N F E T++ E
Sbjct: 434 YHQHMLSFRIDPAVD---GYENTVVFDDVIRMEKNTKLNPYNVGFVTERTVV--EKPGYV 488
Query: 604 DCNPLTARHWIVRNTRTVNRTGQL-TGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVT 662
+ +P T R + + N +N + YK++ + + LA D+ +RA F +WVT
Sbjct: 489 EQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVT 548
Query: 663 AYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLW 704
Y +E++ GEF NQ+ + GL W +++ + + V+W
Sbjct: 549 KYRDNELYAAGEFTNQS-QTDTGLGVWARRDENVRNDNPVVW 589
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 178/648 (27%), Positives = 298/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 179
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VPYGDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
NY+Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 464 GNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 684
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/648 (27%), Positives = 297/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 179
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VPYGDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
N +Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 464 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 684
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 229 bits (583), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/648 (27%), Positives = 297/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 174
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VPYGDP+ Y K ++G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLESGDYGMGTLTSPIARGKDAPSN 400
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
N +Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 679
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 229 bits (583), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 176/648 (27%), Positives = 297/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 179
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VP+GDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPFGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
N +Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 464 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 684
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/648 (27%), Positives = 297/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 174
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VPYGDP+ Y K ++G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLNSGDYGMGTLTSPIARGKDAPSN 400
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
N +Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 679
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 176/648 (27%), Positives = 296/648 (45%), Gaps = 77/648 (11%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPL+ L+ EI AV V+A+ + + + RF E+ L+ PDK V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
R+A +++ + K ++ V+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEAV--VDL-----------QNNKLLSWQP 174
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSR- 257
+ D + +++A + + F A+KKRGI D V+ VGY+ D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 258 -RLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLP-PADPLRN 315
RL K + + D N +A P+E + +VD++ +++ E+ +VP+P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 316 YTRGETRGGVDRSD--VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVA 373
G DR VKP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 374 YLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433
Y D +R V + S M+VPYGDP+ Y K +G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLASGDYGMGTLTSPIARGKDAPSN 400
Query: 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRR-LTVSFICTV 492
+ ++TG I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 493 ANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ--------PGESRKYGTMIAPSLYAPV 544
N +Y F W F+++G I + TG+ ++ ++ + +YGT+I ++
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 545 HQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRD 604
HQH + R+D++VD GE N +V +D V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVD---GEN-NSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 605 CNPLTARHWIVRNTRTVNRTGQLTGYKLVP-GSNCLPLA-----GPDATVFRRAAFLKHN 658
+P T R ++ N NR G Y+++P P+A PD ++ R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 659 LWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
LWVT Y E FP G++PN++ GL + K N L+ +D V+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMT 679
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 168/647 (25%), Positives = 290/647 (44%), Gaps = 69/647 (10%)
Query: 76 QTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPF 135
HPLDPL+ E +AV T+ P + + F + L +P+K+ V + +
Sbjct: 5 HVQHPLDPLTKEEF-LAVQTI-VQNKYPISNNRLAFHYIGLDDPEKDHVLRYETH----- 57
Query: 136 QPSLLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS 195
P+L+ +P + + + N +++E I + ++ ++ H G
Sbjct: 58 -PTLV-----------SIPRKIFVVAIINSQTHEILINL----RIRSIVSDNIHNGYGF- 100
Query: 196 SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYY-SDADA 254
P + +E + +PPF +++KKRG+ ++ ++ ++ +G++ + +
Sbjct: 101 --------PILSVDEQSLAIKLPLKYPPFIDSVKKRGL-NLSEIVCSSFTMGWFGEEKNV 151
Query: 255 PSRRLAKPLIFCRTESDCPME----NGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPA 310
+ RL DC M+ N Y RP+ GI ++ D+ M ++E+ DR + +P A
Sbjct: 152 RTVRL-----------DCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTA 200
Query: 311 DPLRNYTRGET--RGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLV 368
+ ++ G S L QP+GP F++NG+ V W W F IGF R G+V
Sbjct: 201 ENTEYQVSKQSPPFGPKQHS----LTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIV 256
Query: 369 IYSVAYLDGSRGR-RSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKG 427
I + D + + R V ++ E+ VPY DP E Y K FD+GE G G + SL
Sbjct: 257 ISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPN 316
Query: 428 CDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDW---RTGFAEVRRSRRL 484
DC + ++ D + + G ++N +C+ E+ ++W+H + E R L
Sbjct: 317 RDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNL 376
Query: 485 TVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRK-----YGTMIAPS 539
V I TV N + W F G I+ + L+G+L + + +G +++ +
Sbjct: 377 IVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSAN 436
Query: 540 LYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEM 599
H HF+I +D ++D +F + V+++ GS+ + + E K+E
Sbjct: 437 SIGIYHDHFYIYYLDFDIDGT-HNSFEKTSLKTVRIKD--GSSKRKSYWTTETQTAKTES 493
Query: 600 QAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNL 659
A L +V N G GY+L+P PL D R AF +N+
Sbjct: 494 DAKITIG-LAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNV 552
Query: 660 WVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
WVTAY R E + GG + + + R + L W KQNR + DIV+W V
Sbjct: 553 WVTAYNRTEKWAGGLYVDHS-RGDDTLAVWTKQNREIVNKDIVMWHV 598
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 168/644 (26%), Positives = 290/644 (45%), Gaps = 69/644 (10%)
Query: 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPS 138
HPLDPL+ E +AV T+ P + + F + L +P+K+ V + + P+
Sbjct: 3 HPLDPLTKEEF-LAVQTI-VQNKYPISNNRLAFHYIGLDDPEKDHVLRYETH------PT 54
Query: 139 LLPRTKGGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198
L+ +P + + + N +++E I + ++ ++ H G
Sbjct: 55 LV-----------SIPRKIFVVAIINSQTHEILINL----RIRSIVSDNIHNGYGF---- 95
Query: 199 VPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYY-SDADAPSR 257
P + +E + +PPF +++KKRG+ ++ ++ ++ +G++ + + +
Sbjct: 96 -----PILSVDEQSLAIKLPLKYPPFIDSVKKRGL-NLSEIVCSSFTMGWFGEEKNVRTV 149
Query: 258 RLAKPLIFCRTESDCPME----NGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313
RL DC M+ N Y RP+ GI ++ D+ M ++E+ DR + +P A+
Sbjct: 150 RL-----------DCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENT 198
Query: 314 RNYTRGET--RGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYS 371
++ G S L QP+GP F++NG+ V W W F IGF R G+VI
Sbjct: 199 EYQVSKQSPPFGPKQHS----LTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISL 254
Query: 372 VAYLDGSRGR-RSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDC 430
+ D + + R V ++ E+ VPY DP E Y K FD+GE G G + SL DC
Sbjct: 255 ASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDC 314
Query: 431 LGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDW---RTGFAEVRRSRRLTVS 487
+ ++ D + + G ++N +C+ E+ ++W+H + E R L V
Sbjct: 315 PPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPNESIEESRTEVNLIVR 374
Query: 488 FICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRK-----YGTMIAPSLYA 542
I TV N + W F G I+ + L+G+L + + +G +++ +
Sbjct: 375 TIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIG 434
Query: 543 PVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAM 602
H HF+I +D ++D +F + V+++ GS+ + + E K+E A
Sbjct: 435 IYHDHFYIYYLDFDIDGT-HNSFEKTSLKTVRIKD--GSSKRKSYWTTETQTAKTESDAK 491
Query: 603 RDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVT 662
L +V N G GY+L+P PL D R AF +N+WVT
Sbjct: 492 ITIG-LAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVT 550
Query: 663 AYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFV 706
AY R E + GG + + + R + L W KQNR + DIV+W V
Sbjct: 551 AYNRTEKWAGGLYVDHS-RGDDTLAVWTKQNREIVNKDIVMWHV 593
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 47/361 (13%)
Query: 329 DVKPLQIVQPEGPSFRVNGY--FVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAH 386
D K ++V+PEG + +G + W W F ++ G+ Y + + +G R + +
Sbjct: 319 DRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITF----KGER-IVY 373
Query: 387 RLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDA---HFTN 443
LS E++ YG ++P + + G+G N SL G DC YF +
Sbjct: 374 ELSLQELIAEYG-SDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPATAGYFTTDTFEYDE 431
Query: 444 FTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHF 503
F T+ CV ++ED+ +L +H ++ + ++ L V FI T+ N +Y F + F
Sbjct: 432 FYN--RTLSYCVFENQEDYSLL-RHTG--ASYSAITQNPTLNVRFISTIGNXDYNFLYKF 486
Query: 504 YQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGE 563
+ DG +E V+ G + G P S YG I L H H ++D++V
Sbjct: 487 FLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNR 546
Query: 564 AFNQVVEVDVKVEKPGG-SNVHNNAFYAEETLLKSEMQAMRDCNPLTARHW--------I 614
A V++ DV VE P V+N A E L K + + +W +
Sbjct: 547 ASKYVMK-DVDVEYPWAPGTVYNTKQIAREVLEKEDFNGI---------NWPENGQGILL 596
Query: 615 VRNTRTVNRTGQLTGYKLVPGSNCL------PLAGPDATVFRRAAFLKHNLWVTAYARDE 668
+ + N G Y ++PG + +GP+ + R+ NL++T + +E
Sbjct: 597 IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARS-----NLFLTKHKDEE 651
Query: 669 M 669
+
Sbjct: 652 L 652
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 49/362 (13%)
Query: 329 DVKPLQIVQPEGPSFRVNG---YFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVA 385
D K ++V+PEG + +G YF W W F ++ G+ Y + + +G R +
Sbjct: 279 DRKSPRLVEPEGRRWAYDGDEEYF-SWMDWGFYTSWSRDTGISFYDITF----KGER-IV 332
Query: 386 HRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDA---HFT 442
+ LS E++ YG ++P + + G+G N SL G DC YF +
Sbjct: 333 YELSLQELIAEYG-SDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPSTAGYFTTDTFEYD 390
Query: 443 NFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWH 502
F T+ CV ++ED+ +L +H ++ + ++ L V FI T+ N +Y F +
Sbjct: 391 EFYN--RTLSYCVFENQEDYSLL-RHT--GASYSAITQNPTLNVRFISTIGNXDYNFLYK 445
Query: 503 FYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPG 562
F+ DG +E V+ G + G P S YG I L H H ++D++V
Sbjct: 446 FFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKN 505
Query: 563 EAFNQVVEVDVKVEKPGG-SNVHNNAFYAEETLLKSEMQAMRDCNPLTARHW-------- 613
A +Q V DV VE P V+N A E + + +W
Sbjct: 506 RA-SQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGI---------NWPENGQGIL 555
Query: 614 IVRNTRTVNRTGQLTGYKLVPGSNCL------PLAGPDATVFRRAAFLKHNLWVTAYARD 667
++ + N G Y ++PG + +GP+ + R+ NL++T +
Sbjct: 556 LIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARS-----NLFLTKHKDT 610
Query: 668 EM 669
E+
Sbjct: 611 EL 612
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 144/344 (41%), Gaps = 20/344 (5%)
Query: 316 YTRGETRGGVDRSDVK-PLQIVQPEGPSFRVNG--YFVQWQKWNFRIGFTPREGLVIYSV 372
+ E RG V D K P ++ P+G + V+ +V W ++F I F GL ++ +
Sbjct: 310 WAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDI 369
Query: 373 AYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG 432
Y +G+R V + L E + Y N+P A+ G G A L KG DC
Sbjct: 370 KY----KGQR-VLYELGLQEALAHYA-ANDPVQSSVAYLDSYYGFGPYAFELLKGYDCPS 423
Query: 433 YIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQDWRTGFAEVRRSRRLTVSFICT 491
Y Y + F T + +CL E D + +H + F V ++ T+ + T
Sbjct: 424 YASYLNTSFYK-DEETHTHVDSLCLFEFDADYPMARHS--TSEFVSVTKNVYFTLRSVST 480
Query: 492 VANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIA 551
+ N +Y F ++F+ DG I EV+ +G + ++ +G I SL +H H
Sbjct: 481 IGNXDYMFSYNFHMDGTIGVEVRASGYIQSAYY--ANNQDFGYQIHDSLSGSMHDHVLNF 538
Query: 552 RMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDC--NPLT 609
+ D ++ P V V V + N N + + SE +A + N T
Sbjct: 539 KADFDI-LGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQT 597
Query: 610 ARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAA 653
H V N N+ G+ GY+++P + L +++ AA
Sbjct: 598 QLH--VVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAA 639
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 10/228 (4%)
Query: 332 PLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFV 391
PLQ P+GP F V G V W F G G ++ V + +G R +A+ +S
Sbjct: 296 PLQF-HPQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRF----QGER-LAYEISLQ 349
Query: 392 EMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETI 451
E YG D+G G+G A L +G DC Y D HF + +T+
Sbjct: 350 EAGAVYGGNTPAAMLTRYMDSGF-GMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTL 408
Query: 452 ENCVCLHEEDHGMLWK--HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKI 509
+ C+ E++ G+ + H D+ + + L + T+ N +Y + FY +G I
Sbjct: 409 HDAFCVFEQNKGLPLRRHHSDFLSHYFGGVAQTVLVFRSVSTMLNXDYVWDMVFYPNGAI 468
Query: 510 EAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEV 557
E ++ TG +S A G +R+YG + PVH H ++D++V
Sbjct: 469 EVKLHATGYIS-SAFLFGAARRYGNQVGEHTLGPVHTHSAHYKVDLDV 515
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 19/373 (5%)
Query: 338 PEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPY 397
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 318 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 372
Query: 398 GDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCL 457
G N P + G G+GK L +G DC Y D HF + +TI + C+
Sbjct: 373 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 431
Query: 458 HEEDHGMLWK--HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKL 515
E++ G+ + H D + + L V + T+ N +Y + F+ G IE
Sbjct: 432 FEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYA 491
Query: 516 TGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKV 575
TG +S A G + KYG ++ VH H ++D++V + + + V V +
Sbjct: 492 TGYIS-SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDM-VFVPM 549
Query: 576 EKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPG 635
P LL+ E QA T R+ + + + N+ G GY++
Sbjct: 550 AVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGYRI--- 605
Query: 636 SNCLPLAGP----DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVK 691
L AG ++++ R ++ ++ L VT +E F +P +
Sbjct: 606 -QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFI 664
Query: 692 QNRPLEESDIVLW 704
N + D+V W
Sbjct: 665 NNETIAGKDLVAW 677
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 19/373 (5%)
Query: 338 PEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPY 397
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 290 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 344
Query: 398 GDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCL 457
G N P + G G+GK L +G DC Y D HF + +TI + C+
Sbjct: 345 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 403
Query: 458 HEEDHGMLWK--HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKL 515
E++ G+ + H D + + L V + T+ N +Y + F+ G IE
Sbjct: 404 FEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYA 463
Query: 516 TGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKV 575
TG +S A G + KYG ++ VH H ++D++V + + + V V +
Sbjct: 464 TGYIS-SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDM-VFVPM 521
Query: 576 EKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPG 635
P LL+ E QA T R+ + + + N+ G GY++
Sbjct: 522 AVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGYRI--- 577
Query: 636 SNCLPLAGP----DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVK 691
L AG ++++ R ++ ++ L VT +E F +P +
Sbjct: 578 -QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFI 636
Query: 692 QNRPLEESDIVLW 704
N + D+V W
Sbjct: 637 NNETIAGKDLVAW 649
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 19/373 (5%)
Query: 338 PEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPY 397
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 303 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 357
Query: 398 GDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCL 457
G N P + G G+GK L +G DC Y D HF + +TI + C+
Sbjct: 358 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 416
Query: 458 HEEDHGMLWK--HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKL 515
E++ G+ + H D + + L V + T+ N +Y + F+ G IE
Sbjct: 417 FEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYA 476
Query: 516 TGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKV 575
TG +S A G + KYG ++ VH H ++D++V + + + V V +
Sbjct: 477 TGYIS-SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDM-VFVPM 534
Query: 576 EKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPG 635
P LL+ E QA T R+ + + + N+ G GY++
Sbjct: 535 AVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGYRI--- 590
Query: 636 SNCLPLAGP----DATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVK 691
L AG ++++ R ++ ++ L VT +E F +P +
Sbjct: 591 -QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFI 649
Query: 692 QNRPLEESDIVLW 704
N + D+V W
Sbjct: 650 NNETIAGKDLVAW 662
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 14/230 (6%)
Query: 334 QIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEM 393
++VQP GP FR+ G V + W+F GL + +V + G +A+ +S E
Sbjct: 281 RLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHF-----GGERIAYEVSVQEA 335
Query: 394 VVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDA-HFTNFTGGVETIE 452
V YG + D G GLG H L G DC + D H+ + V
Sbjct: 336 VALYGGHTPAGMQTKYLDVGW-GLGSVTHELAPGIDCPETATFLDTFHYYDADDPVH-YP 393
Query: 453 NCVCLHEEDHGM-LWKH--QDWRTGFAEVR--RSRRLTVSFICTVANYEYGFYWHFYQDG 507
+CL E G+ L +H +++ GF + + L + TV N +Y + + FY +G
Sbjct: 394 RALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNXDYIWDFIFYPNG 453
Query: 508 KIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEV 557
+EA++ TG + P E ++GT + L +H H R+D++V
Sbjct: 454 VMEAKMHATGYVHATFYTP-EGLRHGTRLHTHLIGNIHTHLVHYRVDLDV 502
>pdb|2IPL|A Chain A, Crystal Structure Of A Disulfide Mutant Glucose Binding
Protein
Length = 318
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 608 LTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGP----------DATVFRRAAFLKH 657
L A+HW +N+ GQ+ + L+ G C P A D + L
Sbjct: 123 LIAKHWAANQGWDLNKDGQIQ-FVLLKGEPCHPDAEARTTYVIKELNDKGIKTEQLQLDT 181
Query: 658 NLWVTAYARDEMFPGGEFPNQN 679
+W TA A+D+M PN N
Sbjct: 182 AMWDTAQAKDKMDAWLSGPNAN 203
>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|N Chain N, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 204
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 358 RIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDP-----NEPHYRKNAFDA 412
R+G+ ++G VIY V G+R R V YG P NE Y+++
Sbjct: 50 RLGYKAKQGFVIYRVRVRRGNRKRP--------VPKGATYGKPTNQGVNELKYQRSLRAT 101
Query: 413 GEDGLGKNAHSLK 425
E+ +G+ A +L+
Sbjct: 102 AEERVGRRAANLR 114
>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 203
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 358 RIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDP-----NEPHYRKNAFDA 412
R+G+ ++G VIY V G+R R V YG P NE Y+++
Sbjct: 49 RLGYKAKQGFVIYRVRVRRGNRKRP--------VPKGATYGKPTNQGVNELKYQRSLRAT 100
Query: 413 GEDGLGKNAHSLK 425
E+ +G+ A +L+
Sbjct: 101 AEERVGRRAANLR 113
>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 192
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 358 RIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDP-----NEPHYRKNAFDA 412
R+G+ ++G VIY V G+R R V YG P NE Y+++
Sbjct: 49 RLGYKAKQGFVIYRVRVRRGNRKRP--------VPKGATYGKPTNQGVNELKYQRSLRAT 100
Query: 413 GEDGLGKNAHSLK 425
E+ +G+ A +L+
Sbjct: 101 AEERVGRRAANLR 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,086,532
Number of Sequences: 62578
Number of extensions: 1008013
Number of successful extensions: 2232
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2018
Number of HSP's gapped (non-prelim): 50
length of query: 735
length of database: 14,973,337
effective HSP length: 106
effective length of query: 629
effective length of database: 8,340,069
effective search space: 5245903401
effective search space used: 5245903401
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)