Query 004700
Match_columns 735
No_of_seqs 175 out of 709
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 11:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1E-180 3E-185 1528.7 68.6 599 77-723 12-610 (647)
2 PRK14696 tynA tyramine oxidase 100.0 4E-174 1E-178 1487.3 67.7 594 77-723 86-695 (721)
3 COG3733 TynA Cu2+-containing a 100.0 1E-172 2E-177 1393.9 55.5 596 77-720 28-625 (654)
4 PLN02566 amine oxidase (copper 100.0 2E-169 4E-174 1437.9 66.8 585 78-721 21-624 (646)
5 KOG1186 Copper amine oxidase [ 100.0 5E-146 1E-150 1218.4 53.1 612 65-725 14-633 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 7E-132 1E-136 1089.7 34.1 382 332-721 1-385 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 2.2E-23 4.8E-28 189.2 10.1 100 204-308 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.7 3.6E-17 7.8E-22 144.8 3.5 85 79-198 1-85 (86)
9 cd09019 galactose_mutarotase_l 27.2 8.5E+02 0.018 26.6 12.6 127 358-517 11-148 (326)
10 PF09248 DUF1965: Domain of un 22.0 77 0.0017 28.1 2.5 24 276-300 3-31 (74)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.5e-180 Score=1528.73 Aligned_cols=599 Identities=51% Similarity=0.887 Sum_probs=565.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (735)
+.|||||||++||++|++|||++.+ .++.++|++|+|+||+|+.|+. | + .+. .++|
T Consensus 12 ~~HPLdpLt~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~EP~K~~v~~---~-----------~-~g~------~~~R 67 (647)
T PRK11504 12 VSHPLDPLTAAEIEAAVAILRAEGL---LGESTRFVSIELAEPPKAEVLA---F-----------D-PGD------PIDR 67 (647)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---cCCceEEEEeeccCCCHHHHHh---h-----------h-cCC------CCCc
Confidence 4699999999999999999999864 2357999999999999999873 1 1 222 2379
Q ss_pred eEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004700 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (735)
Q Consensus 157 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~ 236 (735)
+|+|++++..++.++|++|||+ +++|++++.++++||+++.+|+.+||++|++||+|+++|+||||+++
T Consensus 68 ~a~v~~~~~~~~~~~e~vVdL~-----------~~~V~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 136 (647)
T PRK11504 68 RAFVVLYDRATGKTYEAVVSLT-----------AGEVVSWEEIPGVQPPILLEEFEECEEVVRADPRWQAALAKRGITDF 136 (647)
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCEEEEEEECCCccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCc
Confidence 9999999998889999999998 68999999999999999999999999999999999999999999989
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004700 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (735)
Q Consensus 237 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~~~y 316 (735)
++|+||||++|+++..++.++||+|++||+|. ++++|+||||||||.++||++++||++|+|.+.+|+|+.. +||
T Consensus 137 ~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~---~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~--~~Y 211 (647)
T PRK11504 137 DLVMVDPWSAGYFGEPEERGRRLARGLAFVRA---DPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED--GNY 211 (647)
T ss_pred ceEEEcCccccccCCCCcCCceEEEEEEEEec---CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--CCC
Confidence 99999999999987765557999999999996 4678999999999999999999999999998877877665 699
Q ss_pred CCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEee
Q 004700 317 TRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVP 396 (735)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~Vp 396 (735)
.++.+. +. |+++|||+|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|++ |||+||+|||||+||
T Consensus 212 ~~~~~~-~~-r~dlkPl~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d~g~~-R~v~YrlslsEm~VP 288 (647)
T PRK11504 212 DPEFIP-PL-RTDLKPLEITQPEGPSFTVDGNEVEWQKWSFRVGFNPREGLVLHQVSYDDGGRE-RPILYRASLSEMVVP 288 (647)
T ss_pred ChhHcc-cc-ccCCCCcceeCCCCCcEEEcCCEEEECCcEEEEecCCCCceEEEEEEEcCCCCc-ceEEEEeeeeeeeee
Confidence 988764 44 999999999999999999999999999999999999999999999999998774 889999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccCCce
Q 004700 397 YGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFA 476 (735)
Q Consensus 397 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~g~~ 476 (735)
||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|.|+||||+|||++.+
T Consensus 289 Ygdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D~GilwkHt~~r~~~~ 368 (647)
T PRK11504 289 YGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEEDYGILWKHTDFRTGSA 368 (647)
T ss_pred cCCCCcchhhceeeeccccCCcccccccccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeecCCeeeeeeccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeec
Q 004700 477 EVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDME 556 (735)
Q Consensus 477 ~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~d 556 (735)
+++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.++++.+||++|+|+++|++|||+||||||||
T Consensus 369 ~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~d 448 (647)
T PRK11504 369 EVRRSRRLVISFFATVGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMD 448 (647)
T ss_pred EEEeccEEEEEEEEecccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999977777889999999999999999999999999
Q ss_pred cCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEecCC
Q 004700 557 VDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGS 636 (735)
Q Consensus 557 VDG~~gg~~Nsv~~~~~~~~~~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~ 636 (735)
||| .+|||+++++++.+.++.||+||+|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++
T Consensus 449 IDG----~~Nsv~~~d~~~~p~~~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~ 524 (647)
T PRK11504 449 VDG----PGNSVYEVNSVPVPMGPDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGG 524 (647)
T ss_pred ccC----CCceEEEEEeEecCCCCCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCC
Confidence 998 6899999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEEecccccCCCc
Q 004700 637 NCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFVELLLCLSLLK 716 (735)
Q Consensus 637 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~E 716 (735)
++.+|+.++|+..+||+||+||||||+|+|+|+||+|+|+||+.+ ++||++|+++||+|+|||||||||||+||+||+|
T Consensus 525 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~~Qs~~-~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~E 603 (647)
T PRK11504 525 NPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYAAGDYPNQSAG-GDGLPAYIAADRSIENTDVVLWYTFGITHVPRPE 603 (647)
T ss_pred CccccCCCCchhhhcchhhhCcEEEeccCCCccccCCCCcccCCC-CCCHHHHhcCCCccccCceEEEEecCcccCCChh
Confidence 999999999999999999999999999999999999999999986 5799999999999999999999999999999999
Q ss_pred cchhhhh
Q 004700 717 LLMNSYL 723 (735)
Q Consensus 717 D~Pnt~~ 723 (735)
|+|++-.
T Consensus 604 D~PvMP~ 610 (647)
T PRK11504 604 DWPVMPV 610 (647)
T ss_pred hCCCCcc
Confidence 9998553
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=4.5e-174 Score=1487.26 Aligned_cols=594 Identities=29% Similarity=0.517 Sum_probs=545.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (735)
+.|||||||++||++|++||+++... +..++|++|+|+||+|..|+. | +. .+.. .+|+|
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------~~--~~~~----~~~~R 144 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLKEPDKEAVWA---F---------AL--ENKP----VDQPR 144 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEEEecCCCcHHHHH---H---------Hh--cCCC----CCCCc
Confidence 46999999999999999999998631 236999999999999999973 1 12 2221 24689
Q ss_pred eEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004700 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (735)
Q Consensus 157 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~ 236 (735)
+|+|+++. +.+++|++|||+ +++|++|+.++++||+++.+|+.+||++|++||+|+++|++|||+++
T Consensus 145 ~A~v~~~~--~~~~~e~vVdL~-----------~~~v~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 211 (721)
T PRK14696 145 KADVIMLD--GKHVIEAVVDLQ-----------NNKVLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDV 211 (721)
T ss_pred EEEEEEEe--CCCEEEEEEECC-----------CCEEEEEEeCCCccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCC
Confidence 99999985 466999999998 68999999999999999999999999999999999999999999989
Q ss_pred CeEEEecccccccCCCCC--CCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCC
Q 004700 237 DLVMVDAWCVGYYSDADA--PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLR 314 (735)
Q Consensus 237 ~~v~~dpw~~G~~~~~~~--~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~~ 314 (735)
++|+||||++||++..++ .++|++|++||+|. +++|+||||||||+++||++++||++|+|.+..+.|... +
T Consensus 212 ~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~~----~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~--~ 285 (721)
T PRK14696 212 KKVITTPLTVGYFDGKDGLKQDARLLKVVSYLDV----GDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA--R 285 (721)
T ss_pred CEEEEeCccccccCCcCccccCceEEEEEEEEcC----CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--c
Confidence 999999999999876643 36999999999973 578999999999999999999999999998765554433 6
Q ss_pred CCCCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEE
Q 004700 315 NYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMV 394 (735)
Q Consensus 315 ~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~ 394 (735)
||.++.. .|+++||++|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|++ ||||||+|||||+
T Consensus 286 ~Y~~~~~----~r~~lKPl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d~g~~-R~v~YrlSlsEm~ 360 (721)
T PRK14696 286 PYDGRDR----VAPAVKPLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYNDNGTK-RKVMYEGSLGGMI 360 (721)
T ss_pred CCCcccc----ccCCCCCceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcCCCcc-eeEEEEeeeeeEE
Confidence 9988662 3999999999999999999999999999999999999999999999999998774 8999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccCC
Q 004700 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTG 474 (735)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~g 474 (735)
||||||+++|++|+|||+||||||.+||+|+|||||||+|+|||+++.+.+|+|++++|||||||+|+|++|||+||+++
T Consensus 361 VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D~G~~wkHt~~~~~ 440 (721)
T PRK14696 361 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQP 440 (721)
T ss_pred EeCCCCCchhhhceeeeccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeecCCCceeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCC--------CCCCCCcccccCCCccccce
Q 004700 475 FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQP--------GESRKYGTMIAPSLYAPVHQ 546 (735)
Q Consensus 475 ~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~--------~~~~~yGt~V~p~~~g~~Hq 546 (735)
++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+ +++.+|||+|+|+++|++||
T Consensus 441 -~~~~r~r~LVvr~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~Hq 519 (721)
T PRK14696 441 -NVSTERRELVVRWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQ 519 (721)
T ss_pred -cceEeeeEEEEEEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccce
Confidence 789999999999999999999999999999999999999999999988532 33468999999999999999
Q ss_pred eeEEEEEeeccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCC
Q 004700 547 HFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQ 626 (735)
Q Consensus 547 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~ 626 (735)
||||||||||||| .+|||++++++..+.+..||++|+|+++++.+++|++|++++++.++|+ |+|++++|++|+
T Consensus 520 H~f~~RlD~dIDG----~~Nsv~~~d~~~~p~~~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~ 593 (721)
T PRK14696 520 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 593 (721)
T ss_pred EEEEEEEcccccC----CcceEEEEeeeEccCCCCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCC
Confidence 9999999999998 7999999999988877899999999999999999999999999999996 899999999999
Q ss_pred ceeEEEecCC--CCC----CCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCC
Q 004700 627 LTGYKLVPGS--NCL----PLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESD 700 (735)
Q Consensus 627 p~gYkl~p~~--~~~----~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eD 700 (735)
|+||||+|+. +++ +++.|+|+..+||+||+||||||+|+|+|+||+|+|+||+++ ++||++|+++||+|+|+|
T Consensus 594 pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g-~~gl~~w~~~~e~i~n~D 672 (721)
T PRK14696 594 PVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 672 (721)
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccCCc
Confidence 9999999974 332 378999999999999999999999999999999999999987 579999999999999999
Q ss_pred cEEEEEecccccCCCccchhhhh
Q 004700 701 IVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 701 iVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
||||||||+||+||+||+|++-.
T Consensus 673 iV~W~t~G~~HvPr~ED~PvMP~ 695 (721)
T PRK14696 673 AVVWMTTGTTHVARAEEWPIMPT 695 (721)
T ss_pred eEEEEecCcccCCchhhCCCccc
Confidence 99999999999999999999443
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-172 Score=1393.95 Aligned_cols=596 Identities=44% Similarity=0.746 Sum_probs=565.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (735)
.+|||||||++||+.|++|||+.... .+.++|..|+|.||+|+.++.+ ...+ .++.|
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~---~~~~~F~~VtL~eP~K~~v~~f---------------~~~~-----~~ieR 84 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADF---KKNFAFTEVTLLEPDKQEVLAF---------------RLEN-----KPIER 84 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhccc---CCceeeEEEEecCCchHHHHHH---------------HhcC-----CCcch
Confidence 57999999999999999999997653 3579999999999999999731 2212 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004700 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (735)
Q Consensus 157 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~ 236 (735)
.|++++|..+...++|++|+|. +.+|.+|+.++.++|+|+.+||..||.+++++|+|+|||+||||+|+
T Consensus 85 ~a~~~~~~~~~~~i~EavV~L~-----------~nkv~~~q~i~~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~ 153 (654)
T COG3733 85 KALAVVYELDGKGIYEAVVDLD-----------NNKVLSWQPIKDAHPMITLDEFASVENIVRNDPRFIEACKKRGITDM 153 (654)
T ss_pred hhhhheeeccCCceEEEEEEcc-----------cceeeeeEeccccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchh
Confidence 9999999999999999999998 68999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004700 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (735)
Q Consensus 237 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~~~y 316 (735)
++|+||||+.||+++++..++|+++.++|+|.. .++|+|+|||+||+++||++++||++|+|++++|+|... .+|
T Consensus 154 ~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~---e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~--~ny 228 (654)
T COG3733 154 DQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV---EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR--ANY 228 (654)
T ss_pred hceEeccccccccCccccccceeEEEEEEEEec---CCCCcccccccceeeEEEcccCeEEEecCCCcccccccc--cCc
Confidence 999999999999987777899999999999973 468999999999999999999999999999999999854 688
Q ss_pred CCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEee
Q 004700 317 TRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVP 396 (735)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~Vp 396 (735)
.++.+. . .+.++||++|.||+|+||+|+|++|+||+|+||+|||+||||+||||+|+|+|. +|+|+||+||+||+||
T Consensus 229 ~~e~i~-~-~~~~~KpiqI~QPeg~sf~i~G~~i~W~~w~frig~n~ReGlvl~dVsY~D~g~-~Rpv~YraSl~eMvVP 305 (654)
T COG3733 229 GRERIG-K-ALGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIGMNPREGLVLSDVSYNDNGN-KRPVLYRASLVEMVVP 305 (654)
T ss_pred CHHHhh-h-hcCCCCCceeecCCCceEEEecCEEEEeeeeEEEeccccCCeEEEEEEEcCCCc-cceEEEEeeecceeee
Confidence 766543 2 367799999999999999999999999999999999999999999999999876 7999999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCC-CeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccCCc
Q 004700 397 YGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG-YIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGF 475 (735)
Q Consensus 397 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg-~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~g~ 475 (735)
||||+++|++|++||+||||||.++++|.+| ||.| .|+|||+++++.+|+|+++||||||||+|+|+||||+|||++.
T Consensus 306 YGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed~GvlwKH~d~rs~~ 384 (654)
T COG3733 306 YGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEEDAGVLWKHQDFRSPN 384 (654)
T ss_pred cCCCCcchhhhhcccccccCccccccchhhc-ccccceeEEEeeeeeccCCceEEecceeEEEeccccceeeehhhcCCc
Confidence 9999999999999999999999999999999 9999 9999999999999999999999999999999999999999999
Q ss_pred eeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCC-CcccccCCCccccceeeEEEEEe
Q 004700 476 AEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRK-YGTMIAPSLYAPVHQHFFIARMD 554 (735)
Q Consensus 476 ~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~-yGt~V~p~~~g~~HqH~f~~RlD 554 (735)
.+++|.|.||||+|+||+||||+|+|+|||||+||+|++||||+++.+..+++..+ |||+|.|++.|++||||||+|||
T Consensus 385 ~~trr~r~LVVs~i~Tv~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLd 464 (654)
T COG3733 385 VETRRARGLVVSWIATVANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLD 464 (654)
T ss_pred cceeeccceEEEEEEeecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeec
Confidence 99999999999999999999999999999999999999999999999888877655 99999999999999999999999
Q ss_pred eccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEec
Q 004700 555 MEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVP 634 (735)
Q Consensus 555 ~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p 634 (735)
||||| ..|||+++++...+.+++||+||+|.++++++++|++|.+++|+.+.|+|+|+|++|+|..|+|++|||+|
T Consensus 465 m~VDG----~~Nsv~e~nv~~~P~~~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~ 540 (654)
T COG3733 465 MDVDG----ERNSVVEMNVVGAPITKGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIP 540 (654)
T ss_pred ccccC----cccceEEEEcccCCCCCCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEec
Confidence 99998 69999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEEecccccCC
Q 004700 635 GSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFVELLLCLSL 714 (735)
Q Consensus 635 ~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr 714 (735)
+.+..+++.++|.+.+|++|++||||||+|++.|+||+|+|+||+++ ++||++|+++||||+|||||+|||||+||+||
T Consensus 541 ~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ErYp~GdYpnq~~~-~~GLp~yi~~d~sl~neDlVvW~T~GitHv~r 619 (654)
T COG3733 541 GHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGERYPAGDYPNQSAG-GKGLPEYIKDDRSLDNEDLVVWHTFGITHVPR 619 (654)
T ss_pred CCCCCCcCCCCcchhhhhhhccceEEEeccCcccccCCCCCCCCCCC-CCChhhhhhccccccCcceEEEEecCceeccC
Confidence 99999999999999999999999999999999999999999999986 57999999999999999999999999999999
Q ss_pred Cccchh
Q 004700 715 LKLLMN 720 (735)
Q Consensus 715 ~ED~Pn 720 (735)
+||+|.
T Consensus 620 pED~Pv 625 (654)
T COG3733 620 PEDWPV 625 (654)
T ss_pred cccCCc
Confidence 999986
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1.6e-169 Score=1437.95 Aligned_cols=585 Identities=30% Similarity=0.517 Sum_probs=530.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004700 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (735)
Q Consensus 78 ~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (735)
.|||||||++||++|++|||++.+.. ...++|++|+|+||+|..|+. | +..++.+. +.|+|+
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------~~~~~~~~----~~p~R~ 82 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGN--LPNLTFHFLDLEEPEKRDVLK---W---------LSSNPSNK----SPPPRR 82 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCC--CCceEEEEEEccCCChHHHHh---h---------hhcccCCC----CCCCcE
Confidence 69999999999999999999986421 135999999999999999973 1 33344333 246899
Q ss_pred EEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCC-CCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004700 158 ARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDI-QPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (735)
Q Consensus 158 A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~-~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~ 236 (735)
|+|++ ..+++++|++|||+ .++|++++.+++. ||+++.+|+.+||++|++||.|+|+|++|||++
T Consensus 83 a~v~~--~~~~~~~e~vVdl~-----------~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~- 148 (646)
T PLN02566 83 AKVVV--RAGGETYELIVDLA-----------TGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNI- 148 (646)
T ss_pred EEEEE--ecCCCEEEEEEECC-----------CCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCc-
Confidence 99665 44567999999998 6899999999988 999999999999999999999999999999954
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004700 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (735)
Q Consensus 237 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~~~y 316 (735)
++|+||||++||++. + .++|++|++||+|. +++|+||||||||+++||++++||++|+|....|+|+... +
T Consensus 149 ~~V~~dpw~~G~~~~-~-~~~R~~q~~~y~r~----~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~--~- 219 (646)
T PLN02566 149 SEVSCIPFTVGWYGE-T-VTKRALKISCFYRG----GSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEG--T- 219 (646)
T ss_pred ceEEEeCcccccCCC-C-CCcEEEEEEEEEcC----CCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCC--C-
Confidence 789999999999876 3 37999999999993 4789999999999999999999999999876556665431 1
Q ss_pred CCCCcCCCCCCCCCCCCcccCCC-CCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCC-eeeEEEEeeeeeEE
Q 004700 317 TRGETRGGVDRSDVKPLQIVQPE-GPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRG-RRSVAHRLSFVEMV 394 (735)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPe-G~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g-~R~I~YrlSl~Em~ 394 (735)
+. |.|+||++|+||| |+||+|+|++|+||||+||||||+|||||||||+|+|.+.+ .||||||+|||||+
T Consensus 220 -------~~-R~d~kPl~i~QPegG~sF~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~ 291 (646)
T PLN02566 220 -------DF-RTKHKPFSFPCNVSDSGFTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETF 291 (646)
T ss_pred -------CC-CcCCCCccccCCCCCCcEEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeE
Confidence 13 8999999999999 59999999999999999999999999999999999985422 58999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecC-Cccccccccc-
Q 004700 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDH-GMLWKHQDWR- 472 (735)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~-GilwkH~d~r- 472 (735)
||||||+++|+||+|||+||||+|.++|+|+|||||||+|+|||+++++.+|+|++++|||||||+|+ |+||||+|++
T Consensus 292 VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~ 371 (646)
T PLN02566 292 VPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINV 371 (646)
T ss_pred EecCCCCccccccceeeccccCccccccccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5999999996
Q ss_pred ------CCceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCC--CCC---CCCcccccCCCc
Q 004700 473 ------TGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQP--GES---RKYGTMIAPSLY 541 (735)
Q Consensus 473 ------~g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~--~~~---~~yGt~V~p~~~ 541 (735)
+|.++ .+||||+|+|||||||||||+|||||+||+||+|||||++.+... ++. .+|||+|+|+++
T Consensus 372 ~~~~~r~g~~~----~~LVvr~I~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~ 447 (646)
T PLN02566 372 PGRVIRSGEPE----ISLVVRMVATLGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTI 447 (646)
T ss_pred CccccccCcce----EEEEEEEEEEeecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcc
Confidence 44444 499999999999999999999999999999999999999877653 322 589999999999
Q ss_pred cccceeeEEEEEeeccCCCCCCcccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeC
Q 004700 542 APVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNT 618 (735)
Q Consensus 542 g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~ 618 (735)
|++|||+||||||||||| ++|||++++++..+. ++.||++++|+++++.+++|++|++++++++ |.|+|+|+
T Consensus 448 a~~HqH~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~-~~~~i~N~ 522 (646)
T PLN02566 448 AVNHDHFLTYYLDLDVDG----NGNSFVKAKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEP-AELLIVNP 522 (646)
T ss_pred cccceEEEEEEEcccccC----CCCeEEEEeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCC-ceEEEECC
Confidence 999999999999999998 799999999988543 3689999999999999999999999999986 66999999
Q ss_pred CccCCCCCceeEEEecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceec
Q 004700 619 RTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEE 698 (735)
Q Consensus 619 ~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~ 698 (735)
+++|++|+|+||||+|++++.+|+.++|+..+||+||+||||||+|+|+|+||||+|+||+++ +.||++|+++||+|+|
T Consensus 523 ~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g-~~gl~~w~~~~~~I~~ 601 (646)
T PLN02566 523 NKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRG-DDGLAVWSSRNREIEN 601 (646)
T ss_pred CCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCCcccCCCCcCccCCCC-CCChhhhhcCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999986 5699999999999999
Q ss_pred CCcEEEEEecccccCCCccchhh
Q 004700 699 SDIVLWFVELLLCLSLLKLLMNS 721 (735)
Q Consensus 699 eDiVlW~t~G~~HiPr~ED~Pnt 721 (735)
||||||||||+||+||+||+|++
T Consensus 602 ~DiVlW~t~G~~HvPr~ED~PvM 624 (646)
T PLN02566 602 KDIVLWYTVGFHHIPYQEDFPVM 624 (646)
T ss_pred CceEEEEecccccCCChhhCCCc
Confidence 99999999999999999999973
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-146 Score=1218.45 Aligned_cols=612 Identities=35% Similarity=0.566 Sum_probs=546.3
Q ss_pred CCccccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcC
Q 004700 65 SSKGITAMPRPQTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTK 144 (735)
Q Consensus 65 ~~~~~~~~~~~~~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~ 144 (735)
...|+..+..+.+.|||||||+.||.+++.||+....+. ......|+.|.|.||.|+.++. +.+
T Consensus 14 ~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s-~~~~~~~~av~l~eP~K~~vls---------------w~~ 77 (670)
T KOG1186|consen 14 LGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGS-PHPAFEAVAVVLFEPQKQPVLS---------------WLS 77 (670)
T ss_pred cccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCC-CCCceEEEEEEecCCCcCccce---------------ecc
Confidence 345677788888999999999999999999999876543 2457889999999999999862 233
Q ss_pred CCCCCCCCCCCceEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeC-CC-CCCCCCHHHHHHHHHHHHcCh
Q 004700 145 GGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVV-PD-IQPPMDAEEYAQCEAAVKAFP 222 (735)
Q Consensus 145 ~~~~~p~~~P~R~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l-~~-~~p~~~~~E~~~~e~~~~~~p 222 (735)
++ .| ++|+|||++|. +..++++|++|||+ +++|++.+.. .+ +.|.++.+|+....+++++.+
T Consensus 78 -gP-~~-~pPpRRA~vVa--R~gg~t~e~~vdls-----------t~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~ 141 (670)
T KOG1186|consen 78 -GP-LP-HPPPRRALVVE--RHGGPTPEARVDLS-----------TAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFK 141 (670)
T ss_pred -CC-CC-CCCcceeEEEe--ecCCCceEEEEecc-----------hheeeecccccccCccccccHHHHHhhhcCCcccc
Confidence 33 12 57899999985 44578999999998 6788887666 45 689999999999999999999
Q ss_pred hHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecC
Q 004700 223 PFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDR 302 (735)
Q Consensus 223 ~~~ea~~~~Gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~ 302 (735)
.|...+.+||+... .|.|.+|..||+++.+...+|+++..||+|.+ ..|.|.+||+|++++||+++|||++++|+
T Consensus 142 ~f~~si~~rG~~~s-~vic~~~t~Gwyge~~~g~~Rlik~~~f~~~~----~~n~y~rpieg~yi~vdld~~kVi~~~d~ 216 (670)
T KOG1186|consen 142 PFCPRGLRRGDRMS-WVVCYPNTSGWYGEHPVGLERLIKHMAFYRAG----WVNQQVRPIEGFYIIVDLDEMKVIAGRDR 216 (670)
T ss_pred ccchhhhccCCcce-eEEEecceeeecccCCcchhhhhhhcccccCC----CeeEEEeecCceEEeeccccceEEEEecc
Confidence 99999999998654 57788999998888766668999999999974 47999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCee
Q 004700 303 KLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRR 382 (735)
Q Consensus 303 ~~~p~p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R 382 (735)
..+|+|... ..+|..+.. . .-+||+..+||||||+|+|+.|+|+||+|||||++|+||+|+||+|.|.+. .|
T Consensus 217 ~~iP~P~~~-Gt~~Rs~~~-----p-~~~pLq~isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~~-~r 288 (670)
T KOG1186|consen 217 VRVPLPKAK-GTELRSSVL-----P-GFKPLQPISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFDEDV-YR 288 (670)
T ss_pred cccccCCCC-CCccccccC-----C-CCccccccCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcCCCc-ee
Confidence 888888765 356633221 1 334488888999999999999999999999999999999999999999876 69
Q ss_pred eEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecC
Q 004700 383 SVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDH 462 (735)
Q Consensus 383 ~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~ 462 (735)
+|+||+|+|||+||||||+++||+|+|||+||||+|..|++|++|||||++|+|||++|+..+|+|.+++||+||||+++
T Consensus 289 ~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~ 368 (670)
T KOG1186|consen 289 RVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYA 368 (670)
T ss_pred eEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ccccccc-ccCC--ceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCC-CCCccccc
Q 004700 463 G-MLWKHQD-WRTG--FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGES-RKYGTMIA 537 (735)
Q Consensus 463 G-ilwkH~d-~r~g--~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~-~~yGt~V~ 537 (735)
| +||||+| ...| ..+++++++|||||++|||||||||||+||+||.||++|+|||||+++++..++. ..|||+|+
T Consensus 369 G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v~ 448 (670)
T KOG1186|consen 369 GDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIVA 448 (670)
T ss_pred CCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEEEeeEEEEEeeccccccccccccceec
Confidence 9 7999999 4455 6899999999999999999999999999999999999999999999999987765 68999999
Q ss_pred CCCccccceeeEEEEEeeccCCCCCCcccEEEEEeeeecC-CCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEE
Q 004700 538 PSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVR 616 (735)
Q Consensus 538 p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~-~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~ 616 (735)
++++|++|||+|+|||||||||. .+|++++..++... ++..+++.+.|.++++++++|++|+.+++..+++.|.|+
T Consensus 449 ~~~ig~~H~H~~~~rldldvdG~---~n~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~ 525 (670)
T KOG1186|consen 449 ENTIGVNHDHFVTFRLDLDVDGT---KNNSFVRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVV 525 (670)
T ss_pred ccccccccceEEEEEEcccccCC---ccceeeeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEE
Confidence 99999999999999999999983 36676665554332 223478888899999999999999999999999999999
Q ss_pred eCCccCCCCCceeEEEecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCce
Q 004700 617 NTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPL 696 (735)
Q Consensus 617 N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI 696 (735)
|++++|+||+|+||||+|++++.+|+.++++.++||+|++||||||+|+++|.||||.|.+|+++ +++|+.|.++|++|
T Consensus 526 n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~-~~tl~~w~~~nr~i 604 (670)
T KOG1186|consen 526 NPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEVWASGLYADQSQG-DDTLAVWSQRNRSI 604 (670)
T ss_pred CCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCccccCcccccccCCCC-CCcceehhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999965 67999999999999
Q ss_pred ecCCcEEEEEecccccCCCccchhhhhhh
Q 004700 697 EESDIVLWFVELLLCLSLLKLLMNSYLYL 725 (735)
Q Consensus 697 ~~eDiVlW~t~G~~HiPr~ED~Pnt~~~~ 725 (735)
+|+|||+|||+||||||++||+||+.+--
T Consensus 605 en~DiV~W~t~Gf~HiP~~ED~P~mpt~~ 633 (670)
T KOG1186|consen 605 ENKDIVMWYTVGFHHVPCQEDFPTMPTLG 633 (670)
T ss_pred ccCceEEEEEcceeecCchhcCCCCcccC
Confidence 99999999999999999999999987543
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=6.6e-132 Score=1089.75 Aligned_cols=382 Identities=51% Similarity=0.864 Sum_probs=348.2
Q ss_pred CCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeee
Q 004700 332 PLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFD 411 (735)
Q Consensus 332 Pl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD 411 (735)
||+|+||||+||+|+|++|+||+|+||++|++||||+||||+|+|+ .|+|+||+|||||+||||||+++|++|+|||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~---~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D 77 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGE---RRPILYRLSLQEMVVPYGDPDPPHHRKNAFD 77 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTE---EEEEEEEEEEEEEEEEEE-SSTTHHH-EEEH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCC---CccEEEEEeeeeeeeecCCCCchhhcccccc
Confidence 8999999999999999999999999999999999999999999862 1269999999999999999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccCCceeeeecceEEEEEeee
Q 004700 412 AGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICT 491 (735)
Q Consensus 412 ~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T 491 (735)
+||||||.++++|++|||||++|+|||+++++++|+|++++|||||||+|.|+||||++++++..+++|+|+||||+|+|
T Consensus 78 ~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G~l~kH~~~~~~~~~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 78 SGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAGPLWKHTDYRTGRFEVRRSRRLVVRTIST 157 (413)
T ss_dssp HHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEEEEEEEEETTSSEEEEEEEEEEEEEEEEE
T ss_pred ccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCCchhhcccccccccceeeccEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeeccCCCCCCcccEEEEE
Q 004700 492 VANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEV 571 (735)
Q Consensus 492 VgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~ 571 (735)
||||||||||+|||||+||++|+|||||+++++.++++.+||++|+|+++|++|||+||||||||||| ++|+|+++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG----~~Nsv~~~ 233 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG----TNNSVVEV 233 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS----SEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCC----CCCeEEEE
Confidence 99999999999999999999999999999999988878899999999999999999999999999998 79999999
Q ss_pred eeeecCC---CCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEecCCCCCCCCCCCchh
Q 004700 572 DVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATV 648 (735)
Q Consensus 572 ~~~~~~~---~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~ 648 (735)
+++.++. +..||++++|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++++.+|+.|+|+.
T Consensus 234 d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~ 313 (413)
T PF01179_consen 234 DIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWV 313 (413)
T ss_dssp EEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCH
T ss_pred EeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchh
Confidence 9998764 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEEecccccCCCccchhh
Q 004700 649 FRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFVELLLCLSLLKLLMNS 721 (735)
Q Consensus 649 ~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~ED~Pnt 721 (735)
.+||+|++||||||||+|+|+||+|+|+||+++. +||++|+++||+|+|||||+|+|||+||+||+||+|.+
T Consensus 314 ~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~-~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvm 385 (413)
T PF01179_consen 314 ARRASFARHHLWVTKYKDSERYASGEYNNQSPGD-VGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVM 385 (413)
T ss_dssp HHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSS-SSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSE
T ss_pred hhccccccCceEEeecCCCccCCCCCCccCCCCC-CCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCC
Confidence 9999999999999999999999999999999864 89999999999999999999999999999999999963
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=2.2e-23 Score=189.21 Aligned_cols=100 Identities=47% Similarity=0.756 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCC
Q 004700 204 PPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVE 283 (735)
Q Consensus 204 p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~ 283 (735)
|||+.+||.+++++++++|.|+++|++||+++++.|+||||++|+++..+ .++|++|++||+|.. ..|+|+|||+
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~g~Rl~~~~~~~r~~----~~n~YahPi~ 75 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-EGRRLTWVLCFMRDS----GNNFYAHPIE 75 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-TTS-EEEEEEEE-SS----TS-GGGSEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-CCceEEEEEEEEEcC----CCcccccccC
Confidence 78999999999999999999999999999999999999999999988765 689999999999974 2399999999
Q ss_pred CeEEEEeccCcEEEEEecCc-cccCC
Q 004700 284 GIYVLVDMQNMVVIEFEDRK-LVPLP 308 (735)
Q Consensus 284 gl~~~vD~~~~~vi~i~d~~-~~p~p 308 (735)
||+++||++++||++|++.+ .+|.|
T Consensus 76 gl~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 76 GLEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp CEEEEEETTTTEEEEEEEEEEEETT-
T ss_pred ceEEEEECCCCEEEEEEeCCceeeCC
Confidence 99999999999999999988 66765
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.66 E-value=3.6e-17 Score=144.75 Aligned_cols=85 Identities=46% Similarity=0.694 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCceE
Q 004700 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRRA 158 (735)
Q Consensus 79 HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~A 158 (735)
|||||||++||++|+++|+++... .+++++|.+|+|.||+|+.|+. +++|+. .|+|+|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~--~~~~~~F~~I~L~EP~K~~vl~---------------~~~~~~-----~p~R~A 58 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL--AGEKNRFRSIELQEPPKAEVLA---------------FERGGP-----PPPRRA 58 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT--TTTSEEEEEEEEE---HHHHHH---------------HHCCTT-----TS-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc--CCCCeEEEEEEeCCCCHHHHhc---------------cccCCc-----CCCeEE
Confidence 999999999999999999998721 3458999999999999999973 245553 479999
Q ss_pred EEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeee
Q 004700 159 RLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198 (735)
Q Consensus 159 ~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~ 198 (735)
+|+++++++. +|++|||+ +|+|++|+.
T Consensus 59 ~vv~~~~~~~--~e~vVdl~-----------~~~V~~~~~ 85 (86)
T PF02727_consen 59 RVVVYDGGQS--YEAVVDLT-----------SGKVVSWKE 85 (86)
T ss_dssp EEEEEETSSS--SEEEEEEE-----------EEECSCEEE
T ss_pred EEEEEECCee--eeEEEECc-----------CCccccCcc
Confidence 9999998766 99999998 688988874
No 9
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=27.19 E-value=8.5e+02 Score=26.60 Aligned_cols=127 Identities=20% Similarity=0.323 Sum_probs=67.1
Q ss_pred EEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCC--CccCCCCCCCCCCCCCCee
Q 004700 358 RIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDG--LGKNAHSLKKGCDCLGYIK 435 (735)
Q Consensus 358 ~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG--~G~~a~~L~~G~DCpg~i~ 435 (735)
++.+. ..|-.|..++.++++ |+ ..|++..|.++.. |... ...+| +|+.+|.+.-|.=-
T Consensus 11 ~~~i~-~~GA~l~~l~~~~~~-g~--------~~~~v~~~~~~~~-~~~~----~~~~g~~lgp~anRi~~g~~~----- 70 (326)
T cd09019 11 RVSIL-NYGATIQSLKVPDKN-GK--------LRDVVLGFDDLED-YLKN----SPYFGATVGRVANRIANGRFT----- 70 (326)
T ss_pred EEEEE-CcCcEEEEEEEECCC-CC--------EeeeEECCCCHHH-HhhC----CCccCCcccCcCCeecCCEEE-----
Confidence 34444 588889999987643 22 2577788854322 2211 13345 78888888754321
Q ss_pred EeceeeecCCCCeEEee---ceEEEeeecCCcccccccccCCceeeeecceEEEEEeee------ecccceeEEEEEecC
Q 004700 436 YFDAHFTNFTGGVETIE---NCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICT------VANYEYGFYWHFYQD 506 (735)
Q Consensus 436 YlDa~~~~~~G~p~~~~---naICifE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T------VgNYDYifdw~F~~D 506 (735)
+| |+.+.++ +.-+||=-..|..++. |. ........++++...+ -++++--..|.+..|
T Consensus 71 -~~-------G~~y~l~~Ne~~~~LHGg~~G~~~~~--w~---~~~~~~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~ 137 (326)
T cd09019 71 -LD-------GKTYQLEANEGPNHLHGGPKGFDKRV--WD---VEEVEENSVTFSLVSPDGEEGFPGNLTVTVTYTLTDD 137 (326)
T ss_pred -EC-------CEEEEccCCCCCcccCCCCccccCcE--Ee---EEeccCCEEEEEEECCcccCCCCeEEEEEEEEEECCC
Confidence 12 2222221 1345554444544442 32 1111134566666654 234444555665555
Q ss_pred CeEEEEEEEee
Q 004700 507 GKIEAEVKLTG 517 (735)
Q Consensus 507 GtIe~ev~aTG 517 (735)
+.+++++.++.
T Consensus 138 ~~L~i~~~~~~ 148 (326)
T cd09019 138 NELTIEYEATT 148 (326)
T ss_pred CEEEEEEEEEe
Confidence 78898888885
No 10
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=22.05 E-value=77 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=16.4
Q ss_pred CccCCCCCCeEEEEeccCc-----EEEEEe
Q 004700 276 NGYARPVEGIYVLVDMQNM-----VVIEFE 300 (735)
Q Consensus 276 n~Ya~Pi~gl~~~vD~~~~-----~vi~i~ 300 (735)
...++|+ ||++.+|++++ ||+.|.
T Consensus 3 ~~tllPl-gl~~~~DiTGrDpS~Wkv~gw~ 31 (74)
T PF09248_consen 3 SETLLPL-GLYFKIDITGRDPSKWKVLGWV 31 (74)
T ss_dssp -GGG-EE-EEEEEEE--SS-GGG-EEEEEE
T ss_pred ccceece-eeEEEEEeccCChHHcEEEEEE
Confidence 4588999 89999999998 666654
Done!