Query 004700
Match_columns 735
No_of_seqs 175 out of 709
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 6E-179 2E-183 1522.6 64.4 602 76-723 20-636 (692)
2 3loy_A Copper amine oxidase; T 100.0 3E-176 9E-181 1492.9 65.8 596 78-723 1-608 (633)
3 1w6g_A Phenylethylamine oxidas 100.0 2E-174 5E-179 1484.7 62.4 592 77-722 6-601 (646)
4 1ksi_A Copper amine oxidase; P 100.0 6E-171 2E-175 1457.6 65.6 598 77-722 1-609 (642)
5 1spu_A Copper amine oxidase; o 100.0 1E-166 3E-171 1442.6 63.0 595 76-723 91-701 (727)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 1E-150 4E-155 1300.7 55.9 586 73-723 13-666 (747)
7 1tu5_A Copper amine oxidase, l 100.0 6E-150 2E-154 1296.8 54.2 583 77-722 39-678 (746)
8 3hi7_A Amiloride-sensitive ami 100.0 6E-147 2E-151 1266.6 46.7 598 78-723 10-667 (731)
9 3pgb_A Putative uncharacterize 100.0 2E-145 5E-150 1256.2 51.8 603 74-723 61-710 (797)
10 2kvt_A Uncharacterized protein 11.1 3.4E+02 0.012 22.4 4.7 14 155-168 8-21 (71)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=6.2e-179 Score=1522.58 Aligned_cols=602 Identities=33% Similarity=0.570 Sum_probs=558.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCC
Q 004700 76 QTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPP 155 (735)
Q Consensus 76 ~~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~ 155 (735)
..+|||||||++||++|++||+++.. ++.++|++|+|+||+|++|+. | ++..+ ++|+
T Consensus 20 ~~~HPLDpLs~~Ei~~a~~iv~~~~~----~~~~~F~~i~L~EP~K~~v~~---~-----------~~~~~-----~~p~ 76 (692)
T 3sxx_A 20 RPAHPLDPLSTAEIKAATNTVKSYFA----GKKISFNTVTLREPARKAYIQ---W-----------KEQGG-----PLPP 76 (692)
T ss_dssp CCSSTTSCCCHHHHHHHHHHHHHHTT----TSCEEEEEEEEECCCHHHHHH---H-----------HHSCC-----CCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC----CCCcEEEEEECCCCCHHHHHH---H-----------HhcCC-----CCCC
Confidence 35899999999999999999998764 357999999999999999983 2 11111 3688
Q ss_pred ceEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCC
Q 004700 156 RRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIED 235 (735)
Q Consensus 156 R~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~ 235 (735)
|+|+|++++.++++++|++|||+ +++|++|+.++++||+|+.|||.+||++|++||+|+++|++|||++
T Consensus 77 R~a~v~~~~~~~~~~~e~vVdl~-----------~~~v~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~ 145 (692)
T 3sxx_A 77 RLAYYVILEAGKPGVKEGLVDLA-----------SLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPA 145 (692)
T ss_dssp CEEEEEEEETTCSSEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCG
T ss_pred eEEEEEEEECCCCCEEEEEEECC-----------CCeEEEEEECCCCcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 99999999988889999999998 6899999999999999999999999999999999999999999965
Q ss_pred --CCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCcc-ccCCCCCC
Q 004700 236 --MDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKL-VPLPPADP 312 (735)
Q Consensus 236 --~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~-~p~p~~~~ 312 (735)
+++|+||||++|+++.. +.++||+|++||+|.. +++|+|||||| |+++||++++||++|++... .|+|+..
T Consensus 146 ~~~~~V~~dpw~~G~~~~~-~~~~Rl~~~~~y~r~~---~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~- 219 (692)
T 3sxx_A 146 NEMHKVYCDPWTIGYDERW-GTGKRLQQALVYYRSD---EDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHK- 219 (692)
T ss_dssp GGGGGEEEEEEECCCCTTT-TTSSCEEEEEEEECSS---TTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSC-
T ss_pred cccceEEEccccccccCCC-CCCceEEEEEEEEecC---CCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCC-
Confidence 45699999999997654 4589999999999973 46899999999 99999999999999988765 4555433
Q ss_pred CCCCCCCCcC--CCCCCC-CCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEee
Q 004700 313 LRNYTRGETR--GGVDRS-DVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLS 389 (735)
Q Consensus 313 ~~~y~~~~~~--~~~~r~-dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlS 389 (735)
..||.++.+. ++. |+ |+|||+|+||||+||+|+||+|+||||+||||||+||||+||||+|+|+|+ .||||||+|
T Consensus 220 ~~~Y~p~~~~~~~~~-r~~d~kP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~R~V~YrlS 297 (692)
T 3sxx_A 220 HANFYPKHMIEKVGA-MRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGN-VRPIFHRIS 297 (692)
T ss_dssp CCCCSHHHHHHHHSS-CCCCCCCCEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred CCCCChHHccccCCC-CCCCCCCceecCCCCCcEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcCCCc-ceeeeeeee
Confidence 4799887654 344 88 999999999999999999999999999999999999999999999999765 699999999
Q ss_pred eeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccc
Q 004700 390 FVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQ 469 (735)
Q Consensus 390 l~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~ 469 (735)
||||+||||||++||+||+|||+||||||.++|+|+|||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+
T Consensus 298 l~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~Gil~kHt 377 (692)
T 3sxx_A 298 LSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHS 377 (692)
T ss_dssp EEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred hheeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeeccCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC--ceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCC-CCCCcccccCCCccccce
Q 004700 470 DWRTG--FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGE-SRKYGTMIAPSLYAPVHQ 546 (735)
Q Consensus 470 d~r~g--~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~-~~~yGt~V~p~~~g~~Hq 546 (735)
|||++ .++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+++ ..+|||+|+|+++|++||
T Consensus 378 ~~r~~~~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~Hq 457 (692)
T 3sxx_A 378 DFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQ 457 (692)
T ss_dssp CGGGTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEE
T ss_pred eccCCCceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCcccccee
Confidence 99998 899999999999999999999999999999999999999999999999998777 689999999999999999
Q ss_pred eeEEEEEeeccCCCCCCcccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCC
Q 004700 547 HFFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNR 623 (735)
Q Consensus 547 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~ 623 (735)
|+||||||||||| .+|||++++++..+. ++.|||||+|++++|+++||++|+++++++++|+|+|+|++++|+
T Consensus 458 H~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~ 533 (692)
T 3sxx_A 458 HLFSLRIDPRIDG----DGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNP 533 (692)
T ss_dssp EEEEEEEEECTTS----SCBEEEEEEEEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCT
T ss_pred EEEEEEeccccCC----CCceEEEEEeEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCC
Confidence 9999999999998 799999999998765 578999999999999999999999999999999999999999999
Q ss_pred C-CCceeEEEecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCC-CCChhhhc-ccCCceecCC
Q 004700 624 T-GQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRI-GEGLPAWV-KQNRPLEESD 700 (735)
Q Consensus 624 ~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~-~~gl~~~~-~~~esI~~eD 700 (735)
+ |+|+||||+|++++++|+.|+|...+||+||+||||||||+|+|+||+|+|+||+++. .+||++|+ ++||+|+|||
T Consensus 534 ~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~D 613 (692)
T 3sxx_A 534 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 613 (692)
T ss_dssp TTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBC
T ss_pred CCCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCc
Confidence 8 9999999999999988999999999999999999999999999999999999999762 37999999 8999999999
Q ss_pred cEEEEEecccccCCCccchhhhh
Q 004700 701 IVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 701 iVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
|||||||||||+||+||+|++-.
T Consensus 614 iV~W~t~G~~HiPr~ED~PvMP~ 636 (692)
T 3sxx_A 614 ILFFHTFGITHFPAPEDFPLMPA 636 (692)
T ss_dssp EEEEEEEEEEECCCGGGSSSCCC
T ss_pred eEEEEecCcccCCchhcCCCCcc
Confidence 99999999999999999999643
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=2.8e-176 Score=1492.91 Aligned_cols=596 Identities=31% Similarity=0.505 Sum_probs=547.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004700 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (735)
Q Consensus 78 ~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (735)
.|||||||++||++|++||+++..+ .+.++|++|+|+||+|+.|+. | |..++.|. +.++|+|+
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------l~~~~~g~--~~~~p~R~ 63 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG---PERPHFIQIDRLDPPKKDMIR---Y---------LEAERTGK--PLPHISRM 63 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS---SSCEEEEEEEECCCCHHHHHH---H---------HHHHHHTC--CCCCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC---CCCcEEEEEECCCCCHHHHHH---H---------HhhhhcCC--CCCCCCcE
Confidence 5999999999999999999987652 257999999999999999984 2 22223232 12467899
Q ss_pred EEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCC-CCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004700 158 ARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPD-IQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (735)
Q Consensus 158 A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~-~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~~ 236 (735)
|+|+++. +++++|++|||+ +++|++|+.+++ +||+|+.+||.+||++|++||+|+++|++|||+++
T Consensus 64 a~v~~~~--~~~~~e~vVdl~-----------~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~ 130 (633)
T 3loy_A 64 TYVYYYI--GLDFYKALVNVS-----------YGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPH 130 (633)
T ss_dssp EEEEEEE--TTEEEEEEEETT-----------TTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTT
T ss_pred EEEEEEe--CCCEEEEEEECC-----------CCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 9997776 678999999998 689999999997 89999999999999999999999999999999998
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCcc------cc---C
Q 004700 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKL------VP---L 307 (735)
Q Consensus 237 ~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~------~p---~ 307 (735)
++|+||||++|+++ +.++||+|||||+|.. +++++|+|||||| |+++||++++||++|++... ++ .
T Consensus 131 ~~V~~dpw~~G~d~---~~~~Rl~q~~~y~r~~-~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~ 205 (633)
T 3loy_A 131 VRVVCDPWMNGTDS---KEDRMLIQCYMYLASA-AHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAW 205 (633)
T ss_dssp EEEEEEEEECCCSS---CCCSCEEEEEEEEEET-TCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCC
T ss_pred ceEEEeccccccCC---CCCcEEEEEEEEEecC-CCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCC
Confidence 99999999999854 3579999999999963 3578999999998 88999999999999987411 11 2
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEE
Q 004700 308 PPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHR 387 (735)
Q Consensus 308 p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~Yr 387 (735)
++ ....||.++.+. +. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+ | |+||||
T Consensus 206 ~~-~~~~~Y~p~~~~-~~-r~d~kp~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~Yr 277 (633)
T 3loy_A 206 DE-FPFVEYHPDLNG-ET-IVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFK----G-RSVVYR 277 (633)
T ss_dssp CC-CCCCCCSTTTSC-CC-CCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEE
T ss_pred CC-CCCCCcChhHcc-cc-cCCCCCcceeCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEEC----C-EEEEEE
Confidence 22 234799987754 34 9999999999999999999999999999999999999999999999997 3 889999
Q ss_pred eeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccc
Q 004700 388 LSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWK 467 (735)
Q Consensus 388 lSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~Gilwk 467 (735)
+|||||+||||||++||+||+|||+||||||.++|+|++||||||+|+|||+++++.+|+|++++|||||||+|+|++||
T Consensus 278 lSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~k 357 (633)
T 3loy_A 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYK 357 (633)
T ss_dssp EEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEeccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCcccccee
Q 004700 468 HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQH 547 (735)
Q Consensus 468 H~d~r~g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH 547 (735)
|+|||+|.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+++..+|||+|+|+++|++|||
T Consensus 358 Ht~~r~~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 437 (633)
T 3loy_A 358 HTNYRTNVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQH 437 (633)
T ss_dssp EECTTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCCTTEEEEETTEEEECEEE
T ss_pred eccccCCceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEEEEEEEEeeeecCCcccCCCcceecCCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999987777899999999999999999
Q ss_pred eEEEEEeeccCCCCCCcccEEEEEeeeecCCC-CCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCC-C
Q 004700 548 FFIARMDMEVDCKPGEAFNQVVEVDVKVEKPG-GSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRT-G 625 (735)
Q Consensus 548 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~-~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~-G 625 (735)
+||||||||||| .+|||++++++..+.+ ..|||||+|+++++.+++| ++++++++++|+|+|+|++++|++ |
T Consensus 438 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G 511 (633)
T 3loy_A 438 MLSFRIDPAVDG----YENTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISK 511 (633)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTC
T ss_pred EEEEEecccccC----CCCEEEEEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCC
Confidence 999999999998 7999999998876644 3799999999999999886 789999999999999999999995 9
Q ss_pred CceeEEEecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEE
Q 004700 626 QLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWF 705 (735)
Q Consensus 626 ~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~ 705 (735)
+|+||||+|+.++++|+.|+|+.++||+||+||||||||+|+|+||||+|+||+.+ ++||++|+++||+|+||||||||
T Consensus 512 ~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~gl~~w~~~~e~i~n~DiV~W~ 590 (633)
T 3loy_A 512 KPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT-DTGLGVWARRDENVRNDNPVVWA 590 (633)
T ss_dssp SEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHTTCCCCCTTBCEEEEE
T ss_pred ccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCCccccCCCCccCCCC-CCChHHHhcCCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999986 57999999999999999999999
Q ss_pred EecccccCCCccchhhhh
Q 004700 706 VELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 706 t~G~~HiPr~ED~Pnt~~ 723 (735)
||||||+||+||+|++-.
T Consensus 591 t~G~~HiPr~ED~PvMP~ 608 (633)
T 3loy_A 591 TLGFTHIPRVEDFPVMPV 608 (633)
T ss_dssp EEEEEECCCGGGCSSEEE
T ss_pred ecCcccCCCcccCCCCcc
Confidence 999999999999999543
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=1.5e-174 Score=1484.72 Aligned_cols=592 Identities=36% Similarity=0.615 Sum_probs=555.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (735)
.+|||||||++||++|++||+++.. .+..++|++|+|+||+|++ ++ ++|+|
T Consensus 6 ~~HPldpLs~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~eP~K~~---------------------g~-----~~P~R 56 (646)
T 1w6g_A 6 TASPFRLASAGEISEVQGILRTAGL---LGPEKRIAYLGVLDPARGA---------------------GS-----EAEDR 56 (646)
T ss_dssp -CCTTCCCCHHHHHHHHHHHHHTTC---CCTTEEEEEEEECCCCSCC---------------------SS-----SCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---CCCCcEEEEEEccCCchhh---------------------CC-----CCCCe
Confidence 5799999999999999999999764 2357999999999999964 22 26799
Q ss_pred eEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEE---eeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCC
Q 004700 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS---SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI 233 (735)
Q Consensus 157 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~---~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl 233 (735)
+|+|++++++++.++|++|+|+ .++|++ ++.++++||+++.+|+.+++++|+++|.|+++|++|||
T Consensus 57 ~A~vv~~~~~~~~~~E~vV~L~-----------~~~v~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl 125 (646)
T 1w6g_A 57 RFRVFIHDVSGARPQEVTVSVT-----------NGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 125 (646)
T ss_dssp EEEEEEEETTSCCCEEEEEETT-----------TTEEEEEEECCHHHHCBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCeEEecccceeCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence 9999999988889999999998 578998 89999999999999999999999999999999999999
Q ss_pred CCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCC
Q 004700 234 EDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313 (735)
Q Consensus 234 ~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~ 313 (735)
+++++|+| ||++||+++..+.++|++|++||+|.. +++|+|+|||+||+++||++++||++|++.+.++.|. ..
T Consensus 126 ~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~--~~ 199 (646)
T 1w6g_A 126 DVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDF---PEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA--EH 199 (646)
T ss_dssp CGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSS---TTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC--SC
T ss_pred CCCCeeEE-eecccccCCccCCCcEEEEEEEEEecC---CCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC--CC
Confidence 98888999 999998776665689999999999873 4589999999999999999999999999876556664 34
Q ss_pred CCCCCCCcCCCCCCCCCCCCcccCCCCCeEEEe-ceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeee
Q 004700 314 RNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVN-GYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVE 392 (735)
Q Consensus 314 ~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vd-g~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~E 392 (735)
+||.++.++++. |+++|||+|+||||+||+|+ |++|+||||+||||||+||||+||||+|+|+|+ .||||||+||||
T Consensus 200 ~~y~~~~~~~~~-r~~lkP~~i~QPeGpsF~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~~g~-~R~V~YrlSlsE 277 (646)
T 1w6g_A 200 GNYTDPELTGPL-RTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAE 277 (646)
T ss_dssp CCTTCHHHHCSC-CCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred CccchhhcCCCc-CCCCCCceecCCCCCceEEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcCCCC-ceEEEEEeeeeE
Confidence 799877654444 99999999999999999999 999999999999999999999999999999765 699999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCccccccccc
Q 004700 393 MVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWR 472 (735)
Q Consensus 393 m~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r 472 (735)
|+||||||++||+||+|||+||||||.+||+|+|||||||+|+|||+++++.+|+|++++|||||||+|+|+||||+|||
T Consensus 278 m~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~GilwkH~~~r 357 (646)
T 1w6g_A 278 MVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLW 357 (646)
T ss_dssp EEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTT
T ss_pred EEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEE
Q 004700 473 TGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIAR 552 (735)
Q Consensus 473 ~g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~R 552 (735)
+|.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+ +..+|||+|+|+++|++|||+||||
T Consensus 358 ~~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t~~~~~-~~~~yGt~V~~~v~a~~HqH~f~~R 436 (646)
T 1w6g_A 358 SGINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFTSAFPE-GGSDNISQLAPGLGAPFHQHIFSAR 436 (646)
T ss_dssp TCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCT-TCCSSEEEEETTEEEECEEEEEEEE
T ss_pred CCceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEeeeecCC-ccCCCcceecCCcccccceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999876 5678999999999999999999999
Q ss_pred EeeccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEE
Q 004700 553 MDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKL 632 (735)
Q Consensus 553 lD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl 632 (735)
||||||| ++|||++++++..+.+..|||||+|++++|++++|++|++++++.++|+|+|+|++++|++|+|+||||
T Consensus 437 lD~dIdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl 512 (646)
T 1w6g_A 437 LDMAIDG----FTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKL 512 (646)
T ss_dssp EEECTTS----SCBEEEEEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEE
T ss_pred ecccccC----CCCEEEEEeeEeccCCCCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEE
Confidence 9999998 799999999998776678999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEEeccccc
Q 004700 633 VPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWFVELLLCL 712 (735)
Q Consensus 633 ~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~t~G~~Hi 712 (735)
+|++++++|+.|+|+.++||+|++||||||||+|+|+||+|+|+||+.+ .+||++|+++||+|+|+|||||||||+||+
T Consensus 513 ~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~ 591 (646)
T 1w6g_A 513 HAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLTHF 591 (646)
T ss_dssp EECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHHTTCCBCTTBCEEEEEEEEEEEC
T ss_pred ccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCcccCCC-CCChhHHhhCCCCcccCceEEEEeCccccC
Confidence 9999999999999999999999999999999999999999999999986 479999999999999999999999999999
Q ss_pred CCCccchhhh
Q 004700 713 SLLKLLMNSY 722 (735)
Q Consensus 713 Pr~ED~Pnt~ 722 (735)
||+||+|++-
T Consensus 592 Pr~ED~PvMP 601 (646)
T 1w6g_A 592 PRVEDWPIMP 601 (646)
T ss_dssp CCGGGSSSEE
T ss_pred CCccccCCCC
Confidence 9999999963
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=5.6e-171 Score=1457.60 Aligned_cols=598 Identities=27% Similarity=0.468 Sum_probs=546.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (735)
++|||||||++||++|++||+++.... ...++|++|+|+||+|++|+. | |. ..++ ++|+|
T Consensus 1 ~~HPldpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------l~-~~~~-----~~P~R 60 (642)
T 1ksi_A 1 VQHPLDPLTKEEFLAVQTIVQNKYPIS--NNRLAFHYIGLDDPEKDHVLR---Y---------ET-HPTL-----VSIPR 60 (642)
T ss_dssp CCSTTCCCCHHHHHHHHHHHHHHSCTT--TCCEEEEEEEECCCCHHHHHH---H---------HH-CGGG-----CCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCC--CCceEEEEEECCCCCHHHHHH---H---------Hh-hcCC-----CCCCc
Confidence 369999999999999999999986421 246899999999999999983 2 11 2233 36899
Q ss_pred eEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCC-CCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCC
Q 004700 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPD-IQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIED 235 (735)
Q Consensus 157 ~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~-~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~ 235 (735)
+|+|+++.+ ++++|++|+|+ .++|++++..+. +||+++.+|+.+++++++++|.|+|+|+++||+
T Consensus 61 ~A~vv~~~~--~~~~E~vV~L~-----------~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~- 126 (642)
T 1ksi_A 61 KIFVVAIIN--SQTHEILINLR-----------IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLN- 126 (642)
T ss_dssp EEEEEEEET--TEEEEEEEETT-----------TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCC-
T ss_pred EEEEEEEeC--CeEEEEEEECC-----------CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCC-
Confidence 999999864 68999999998 578888655553 599999999999999999999999999999996
Q ss_pred CCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCC
Q 004700 236 MDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRN 315 (735)
Q Consensus 236 ~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~~~ 315 (735)
+..|+||||++|+++..+ ++|++|++||++. +++|+|+||||||+++||++++||++|++.+.+++|+.. ..+
T Consensus 127 ~~~v~~~pw~~g~~~~~~--~~Rl~~~~~~~~~----~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~-~~~ 199 (642)
T 1ksi_A 127 LSEIVCSSFTMGWFGEEK--NVRTVRLDCFMKE----STVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAE-NTE 199 (642)
T ss_dssp GGGEEEEEECCCCCSCSC--CCCEEEEEEEECS----SCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCT-TCC
T ss_pred ccceEEecccccCCCCCC--CcEEEEEEEEEec----CCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCC-CCC
Confidence 678999999999987653 6899999999985 368999999999999999999999999988777777544 357
Q ss_pred CCCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCC-eeeEEEEeeeeeEE
Q 004700 316 YTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRG-RRSVAHRLSFVEMV 394 (735)
Q Consensus 316 y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g-~R~I~YrlSl~Em~ 394 (735)
|.+..+.++. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|.++| .|+||||+|||||+
T Consensus 200 y~~~~~~~~~-r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~ 278 (642)
T 1ksi_A 200 YQVSKQSPPF-GPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELF 278 (642)
T ss_dssp CCSTTCCSCC-CCCCCCBEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred ccccccCCCC-CCCCCCceecCCCCCCEEEeCcEEeeCCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEE
Confidence 9887766555 999999999999999999999999999999999999999999999999985433 48999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccCC
Q 004700 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTG 474 (735)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~g 474 (735)
||||||++||++|+|||+||||+|.+||+|+|||||||+|+|||+++++.+|+|++++|||||||+|.|+||||+|||++
T Consensus 279 VPYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~gilwkH~~~r~~ 358 (642)
T 1ksi_A 279 VPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIP 358 (642)
T ss_dssp EEBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEECCST
T ss_pred EeCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEEEcCCEEEEEeccCCcceeeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---ceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecCCC-----CCCCCcccccCCCccccce
Q 004700 475 ---FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPG-----ESRKYGTMIAPSLYAPVHQ 546 (735)
Q Consensus 475 ---~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~-----~~~~yGt~V~p~~~g~~Hq 546 (735)
.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||++.++... +..+|||+|+|+++|++||
T Consensus 359 ~~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~Hq 438 (642)
T 1ksi_A 359 NESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHD 438 (642)
T ss_dssp TCCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEE
T ss_pred CceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccce
Confidence 47899999999999999999999999999999999999999999999877652 2468999999999999999
Q ss_pred eeEEEEEeeccCCCCCCcccEEEEEeeeecCCC-CCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCC
Q 004700 547 HFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPG-GSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTG 625 (735)
Q Consensus 547 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~-~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G 625 (735)
|+||||||||||| ++|||++++++..+.. +.||++++|+++++++++|++|++++++. +|+|+|+|++++|++|
T Consensus 439 H~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~-~r~~~i~N~~~~N~~G 513 (642)
T 1ksi_A 439 HFYIYYLDFDIDG----THNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLA-PAELVVVNPNIKTAVG 513 (642)
T ss_dssp EEEEEEEEECTTS----SCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGGGCBCTTSS-CEEEEEEEEEEECTTS
T ss_pred EEEEEeeccCCCC----CCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhhhhhccCCC-ceEEEEEcCCCcCCCC
Confidence 9999999999998 7999999998876543 57999999999999999999999999999 9999999999999999
Q ss_pred CceeEEEecCCCCCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEE
Q 004700 626 QLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWF 705 (735)
Q Consensus 626 ~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiVlW~ 705 (735)
+|+||||+|++++++|+.|+|+.++||+|++||||||||+|+|+||+|+|+||+++ ++|+.+|+++||+|+|+||||||
T Consensus 514 ~p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~~-~~gl~~~~~~~~~i~~~DiV~W~ 592 (642)
T 1ksi_A 514 NEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRG-DDTLAVWTKQNREIVNKDIVMWH 592 (642)
T ss_dssp CEEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHGGGCCBCSSBCEEEEE
T ss_pred CeeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCCC-CCChhhhhhCCCccccCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999976 57999999999999999999999
Q ss_pred EecccccCCCccchhhh
Q 004700 706 VELLLCLSLLKLLMNSY 722 (735)
Q Consensus 706 t~G~~HiPr~ED~Pnt~ 722 (735)
|||+||+||+||+|++-
T Consensus 593 t~G~~H~Pr~ED~PvMp 609 (642)
T 1ksi_A 593 VVGIHHVPAQEDFPIMP 609 (642)
T ss_dssp EEEEEECCCGGGSSSCC
T ss_pred ecccccCCChhhCCCCc
Confidence 99999999999999963
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=9.8e-167 Score=1442.60 Aligned_cols=595 Identities=28% Similarity=0.515 Sum_probs=542.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCC
Q 004700 76 QTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPP 155 (735)
Q Consensus 76 ~~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~ 155 (735)
...|||||||++||++|+++|+++.. ..+.++|++|+|+||+|++++. | +..+++ ++|+
T Consensus 91 ~~~HPLdpLs~~Ei~~a~~il~~~~~---~~~~~~F~~i~L~eP~K~~vl~---~-----------~~~~~~----~~p~ 149 (727)
T 1spu_A 91 KRPHPLNALTADEIKQAVEIVKASAD---FKPNTRFTEISLLPPDKEAVWA---F-----------ALENKP----VDQP 149 (727)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHTSTT---CCTTCEEEEEEEECCCHHHHHH---H-----------HHHCCC----CCCC
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccc---CCCCcEEEEEEecCCCHHHHHh---H-----------HhcCCC----CCCC
Confidence 35799999999999999999988643 2457999999999999999973 2 123332 3579
Q ss_pred ceEEEEEEECCCCcEEEEEEeCCcccccccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCC
Q 004700 156 RRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIED 235 (735)
Q Consensus 156 R~A~vv~~~~~~~~~~e~vV~L~~~~~~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~~p~~~ea~~~~Gl~~ 235 (735)
|+|+|+++++ ++++|++|+|+ .++|++++.++++||+++.+||.++|++|+++|.|+++|+++||++
T Consensus 150 R~A~vv~~~~--~~~~e~vV~l~-----------~~~v~~~~~~~~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~ 216 (727)
T 1spu_A 150 RKADVIMLDG--KHIIEAVVDLQ-----------NNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITD 216 (727)
T ss_dssp CEEEEEEEET--TEEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSC
T ss_pred eEEEEEEEeC--CeEEEEEEeCC-----------CCceEEEEeCCCcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCc
Confidence 9999999875 67999999997 6899999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccccccCCCCC--CCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCC
Q 004700 236 MDLVMVDAWCVGYYSDADA--PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313 (735)
Q Consensus 236 ~~~v~~dpw~~G~~~~~~~--~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vi~i~d~~~~p~p~~~~~ 313 (735)
+..|+||||++|+++..++ .++|++|++||+.. +++|+|+||||||+++||++++||++|++...+++|...
T Consensus 217 ~~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~----~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~~-- 290 (727)
T 1spu_A 217 AKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDV----GDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTA-- 290 (727)
T ss_dssp TTSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECC----SSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCSC--
T ss_pred cceEEEccccccccCCCCCCCCCcEEEEEEEEEEC----CCCCccccCccceEEEEecccCEEEEEEcCCccccCCCC--
Confidence 9999999999998774442 47999999999843 358999999999999999999999999988776766443
Q ss_pred CCCCCCCcCCCCCCCCCCCCcccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeE
Q 004700 314 RNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEM 393 (735)
Q Consensus 314 ~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em 393 (735)
.+|.+.. +. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .||||||+|||||
T Consensus 291 ~~y~~~~---~~-r~~lkP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~r~V~YrlSl~Em 365 (727)
T 1spu_A 291 RPFDGRD---RV-APAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGT-KRKVMYEGSLGGM 365 (727)
T ss_dssp CCSSSTT---EE-CCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEEE
T ss_pred CCccccc---cc-cCCCCCccccCCCCCCEEECCCccccCCcEEEEecCCCCceEEEEEEEcCCCc-eEEEEEEeEeeEE
Confidence 5787764 23 99999999999999999999999999999999999999999999999999765 6999999999999
Q ss_pred EeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCcccccccccC
Q 004700 394 VVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRT 473 (735)
Q Consensus 394 ~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~GilwkH~d~r~ 473 (735)
+||||||++||+||+|||+||||+|.+||+|+|||||||+|+|||+++++.+|+|++++|||||||+|+|+||||+||+.
T Consensus 366 ~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~G~l~kH~~~~~ 445 (727)
T 1spu_A 366 IVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQ 445 (727)
T ss_dssp EEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEECCTTS
T ss_pred EEeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEecccCCcceeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CceeeeecceEEEEEeeeecccceeEEEEEecCCeEEEEEEEeeeeEeeecC-----CC---CCCCCcccccCCCccccc
Q 004700 474 GFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ-----PG---ESRKYGTMIAPSLYAPVH 545 (735)
Q Consensus 474 g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ev~aTGil~t~~~~-----~~---~~~~yGt~V~p~~~g~~H 545 (735)
.+.++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++. ++ +..+|||+|+|+++|++|
T Consensus 446 -~~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~H 524 (727)
T 1spu_A 446 -PNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTH 524 (727)
T ss_dssp -CCEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECE
T ss_pred -CceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccc
Confidence 467789999999999999999999999999999999999999999987532 21 236899999999999999
Q ss_pred eeeEEEEEeeccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCC
Q 004700 546 QHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTG 625 (735)
Q Consensus 546 qH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~n~~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G 625 (735)
||+||||||||||| ++|||++++++..+.+..||++++|+++++.+++|++|++++++.++|+ |+|++++|++|
T Consensus 525 qH~f~~RlD~dVdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G 598 (727)
T 1spu_A 525 QHIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMG 598 (727)
T ss_dssp EEEEEEEEEECTTS----SEEEEEEEEEEEEECCSCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTS
T ss_pred eeEEEEeecccccC----CCCeEEEEeeEEccCCCCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCC
Confidence 99999999999998 7999999999877766789999999999999999999999999999987 89999999999
Q ss_pred CceeEEEecC--CC----CCCCCCCCchhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCCCChhhhcccCCceecC
Q 004700 626 QLTGYKLVPG--SN----CLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEES 699 (735)
Q Consensus 626 ~p~gYkl~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~e 699 (735)
+|+||||+|. .+ +.+++.|+|+.++||+|++||||||||+|+|+||+|+|+||+++ +.||++|+++||+|+|+
T Consensus 599 ~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~-~~gl~~~~~~~e~i~~~ 677 (727)
T 1spu_A 599 NPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNT 677 (727)
T ss_dssp CEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHHTTCCBCSSE
T ss_pred CeeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCccccC
Confidence 9999999993 32 45789999999999999999999999999999999999999986 46999999999999999
Q ss_pred CcEEEEEecccccCCCccchhhhh
Q 004700 700 DIVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 700 DiVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
|||||||||+||+||+||+|++-.
T Consensus 678 DiV~W~t~G~~H~Pr~ED~Pvmp~ 701 (727)
T 1spu_A 678 DAVVWMTTGTTHVARAEEWPIMPT 701 (727)
T ss_dssp EEEEEEEEEEEECCCGGGSSSEEE
T ss_pred CcEEEEecccccCCChhhCCCCcc
Confidence 999999999999999999999643
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=1.3e-150 Score=1300.69 Aligned_cols=586 Identities=19% Similarity=0.282 Sum_probs=510.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCC-C-CCce---EEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCC
Q 004700 73 PRPQTSHPLDPLSPAEISVAVATVRAAGPTPE-V-RDSM---RFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGP 147 (735)
Q Consensus 73 ~~~~~~HPLDpLs~~EI~~a~~iv~~~~~~~~-~-~~~~---~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~ 147 (735)
......|||||||++||++|+++|+++ .... . ...+ .|..|+|+||+|.+|+. +++++++
T Consensus 13 ~~~~~~~p~~~Ls~~E~~aV~~~L~~~-l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~--------------~Ld~~g~ 77 (747)
T 1w7c_A 13 IEAPKTNIWTSLAKEEVQEVLDLLHST-YNITEVTKADFFSNYVLWIETLKPNKTEALT--------------YLDEDGD 77 (747)
T ss_dssp CCCSSCCTTCCCCHHHHHHHHHHHHHH-SCCCCGGGCCTTSEEEEEEEEECCCHHHHHH--------------HHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-cCCCccccCccccceEEEEECcCCCHHHHHh--------------HhhCCCC
Confidence 344458999999999999999999987 3111 1 1234 68899999999999983 2566653
Q ss_pred CCCCCCCCceEEEEEEECCC--CcEEEEEEe-CCcccccccCccccccEEEeeeCC---C----CCC----CCCHHHHHH
Q 004700 148 VIPSKLPPRRARLVVYNKKS--NETSIWIVE-LSQVHAVTRGGHHRGKVVSSRVVP---D----IQP----PMDAEEYAQ 213 (735)
Q Consensus 148 ~~p~~~P~R~A~vv~~~~~~--~~~~e~vV~-L~~~~~~~~~~~~~~~v~~~~~l~---~----~~p----~~~~~E~~~ 213 (735)
+|+|+|+|+++++++ +.++|++|+ |+ .+++++++.++ + .+| +++.+|+.+
T Consensus 78 -----~P~R~A~vv~~~~~~~~~~~~E~vV~PL~-----------~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~ 141 (747)
T 1w7c_A 78 -----LPPRNARTVVYFGEGEEGYFEELKVGPLP-----------VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAA 141 (747)
T ss_dssp -----CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------CCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHH
T ss_pred -----CCCceEEEEEEeCCCCCCceEEEEEcCCC-----------CCcEEEEEeccccCCCCcccCCcccCCCCHHHHHH
Confidence 689999999999854 779999998 98 46777787773 2 346 999999999
Q ss_pred HHHHHHcChhHHHHH------HHcC-CCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeE
Q 004700 214 CEAAVKAFPPFKEAM------KKRG-IEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIY 286 (735)
Q Consensus 214 ~e~~~~~~p~~~ea~------~~~G-l~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~ 286 (735)
++++|+ .+++++ +++| ++.++ +|+|++|..-+....++|++|++|| |.. .+ +|+|+||| ||+
T Consensus 142 ~e~~~~---~~~~~~~~~~l~~~~g~~~~~~---l~~w~~~~~~~~~~~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~ 210 (747)
T 1w7c_A 142 KSSFLN---KNLNTTIMRDVLEGLIGVPYED---MGCHSAAPQLHDPATGATVDYGTCN-INT--EN-DAENLVPT-GFF 210 (747)
T ss_dssp HHHHHH---HHHTSHHHHHHHHHHHSSCGGG---EEEEECSSCEECTTTCCEEEEEEEE-ECC--SS-SCGGGCEE-EEE
T ss_pred HHHHHH---HHHHHHhhccchhhcCCcccce---eeeecccCCcCCCCCCceEEEEEEE-Eec--CC-CCccccce-eeE
Confidence 999999 666666 6788 86654 8899988641112246899999986 442 23 79999999 799
Q ss_pred EEEecc-----CcEEEEEecCc-----------------cc---cCCCCCCCCCC---CCCCcC-CC-CCCCCCCCCccc
Q 004700 287 VLVDMQ-----NMVVIEFEDRK-----------------LV---PLPPADPLRNY---TRGETR-GG-VDRSDVKPLQIV 336 (735)
Q Consensus 287 ~~vD~~-----~~~vi~i~d~~-----------------~~---p~p~~~~~~~y---~~~~~~-~~-~~r~dlkPl~i~ 336 (735)
++||++ ++||++|++.+ .+ ++| ..+| .+...+ ++ ..|+++|||+|+
T Consensus 211 ~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p----~~~~~~~~~~~~~~g~~~~r~~lkp~~i~ 286 (747)
T 1w7c_A 211 FKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID----VDNLDWTVIQRNDSAPVRHLDDRKSPRLV 286 (747)
T ss_dssp EEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC----TTCCGGGCCSCCTTSCCCTTTTSCCCCCC
T ss_pred EEEeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC----CCCCcccchhhcccCCCCcccCCCCCccc
Confidence 999997 57999985442 11 232 1232 232322 21 248999999999
Q ss_pred CCCCCeEEEeceE--EeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCC
Q 004700 337 QPEGPSFRVNGYF--VQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGE 414 (735)
Q Consensus 337 QPeG~sF~Vdg~~--V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~Ge 414 (735)
||||+||+|+|+. |+||||+||||||+||||+||||+|+ | |+||||+|||||+||||||+++|++|+|||.|
T Consensus 287 QPeG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g- 360 (747)
T 1w7c_A 287 EPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----G-ERIVYELSLQELIAEYGSDDPFNQHTFYSDIS- 360 (747)
T ss_dssp CTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-
T ss_pred CCCCCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeEC----C-EEEEEEEEeeeEEeccCCCCchhheeeeeccc-
Confidence 9999999999999 99999999999999999999999997 4 78999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCc-ccccccccCCceeeeecceEEEEEeeeec
Q 004700 415 DGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQDWRTGFAEVRRSRRLTVSFICTVA 493 (735)
Q Consensus 415 yG~G~~a~~L~~G~DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVg 493 (735)
||+|. ||+|+|||||||+|+|||++++ .+|+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||
T Consensus 361 yG~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~--~~~~v~r~r~LVvr~i~TVg 436 (747)
T 1w7c_A 361 YGVGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA--SYSAITQNPTLNVRFISTIG 436 (747)
T ss_dssp HCSSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET--TEEEEECCEEEEEEEEECCC
T ss_pred cCccc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC--CcceeeeCceEEEEEEEecc
Confidence 99999 9999999999999999999999 999999999999999999998 9999999 78999999999999999999
Q ss_pred ccceeEEEEEecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeeccCCCCCCcccEEEEEee
Q 004700 494 NYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDV 573 (735)
Q Consensus 494 NYDYifdw~F~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~ 573 (735)
||||||||+|||||+||++|+|||||++.++.+++..+|||+|+|+++|++|||+||||||||||| ++|||+++++
T Consensus 437 NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~ 512 (747)
T 1w7c_A 437 NADYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG----TKNRASQYVM 512 (747)
T ss_dssp C-CEEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEE
T ss_pred ccceEEEEEEecCCeEEEEEEeeEEEeccccCCCCcCCCcceecCCcccCccceEEEEEeccccCC----CCCEEEEEee
Confidence 999999999999999999999999999999987766889999999999999999999999999998 7999999999
Q ss_pred eecCCCCCCCCCc-----ceEEEEEEeehhhhhhhccC-CCCCeEEEEEeCCccCCCCCceeEEEecCCC-CCCCCCCCc
Q 004700 574 KVEKPGGSNVHNN-----AFYAEETLLKSEMQAMRDCN-PLTARHWIVRNTRTVNRTGQLTGYKLVPGSN-CLPLAGPDA 646 (735)
Q Consensus 574 ~~~~~~~~np~~n-----~~~~~~t~~~tE~~a~~~~~-~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~-~~~l~~~~s 646 (735)
+..+. .|||++ +|+++++++++|++|+++++ ..++|+| |+|++++|++|+|+||||+|+++ +++++.++|
T Consensus 513 ~~~~~--~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s 589 (747)
T 1w7c_A 513 KDVDV--EYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSR 589 (747)
T ss_dssp EEEEE--ECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCT
T ss_pred EEccc--CCCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCc
Confidence 87664 499999 89999999999999999999 5789999 99999999999999999999998 888999999
Q ss_pred hhhhhhhccccceEEeeccCCCcCCCCCCCCCCCCCC--CChhhhcccCCceecCCcEEEEEecccccCCCccchhhhh
Q 004700 647 TVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIG--EGLPAWVKQNRPLEESDIVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 647 ~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
+..+||+||+||||||||+|+|+||+|+| ||+.+++ .+|++|+ +||+|+|+||||||||||||+||+||+|++.+
T Consensus 590 ~~~~ra~fa~~~lwVT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~t 666 (747)
T 1w7c_A 590 SGPETQNWARSNLFLTKHKDTELRSSTAL-NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIF 666 (747)
T ss_dssp TCSSSCGGGGSSEEEEECCTTCCCSCCTT-CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCS
T ss_pred hhhhcchhccCcEEEecCCCCccCCCCCc-cccCCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCC
Confidence 99999999999999999999999999999 7765432 5699999 99999999999999999999999999999743
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=5.7e-150 Score=1296.84 Aligned_cols=583 Identities=21% Similarity=0.269 Sum_probs=489.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC---CCCC---CCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCC
Q 004700 77 TSHPLDPLSPAEISVAVATVRAAG---PTPE---VRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIP 150 (735)
Q Consensus 77 ~~HPLDpLs~~EI~~a~~iv~~~~---~~~~---~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p 150 (735)
..|||||||++||++++++|+++. .... ...+..|..|+|+||+|..|+. +++++++
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~--------------~Ld~~~~--- 101 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALA--------------HLDRGSP--- 101 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHH--------------HHHHCCC---
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhh--------------hhcCCCC---
Confidence 479999999999999999998864 1110 0012556779999999999983 2456553
Q ss_pred CCCCCceEEEEEEECCC--CcEEEEEEe-CCcccccccCccccccEEEeeeC-----CCCCC----CCCHHHHHHHHHHH
Q 004700 151 SKLPPRRARLVVYNKKS--NETSIWIVE-LSQVHAVTRGGHHRGKVVSSRVV-----PDIQP----PMDAEEYAQCEAAV 218 (735)
Q Consensus 151 ~~~P~R~A~vv~~~~~~--~~~~e~vV~-L~~~~~~~~~~~~~~~v~~~~~l-----~~~~p----~~~~~E~~~~e~~~ 218 (735)
+|+|+|+|+++++++ +.++|++|+ |+ .+++ ++.+ .+.+| +|+.+|+.++|++|
T Consensus 102 --~P~R~A~vv~~~~~~~~~~v~E~vV~PL~-----------~~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~ 166 (746)
T 1tu5_A 102 --PPAREALAIVFFGGQPQPNVTELVVGPLP-----------QPSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQMI 166 (746)
T ss_dssp --CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------SCCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHHH
T ss_pred --CCCccEEEEEEeCCCCCCceEEEEecCCC-----------CCcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHHH
Confidence 689999999999855 779999998 98 3444 3444 23455 99999999999999
Q ss_pred HcChhHHHHHHHcCC---CCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecc---
Q 004700 219 KAFPPFKEAMKKRGI---EDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQ--- 292 (735)
Q Consensus 219 ~~~p~~~ea~~~~Gl---~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~--- 292 (735)
+++|.++++++++|+ +++. +|+++|..|..+.+ .++|++|++|| |.. .+ +|+|+||| ||+++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~p~~~~--~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~vD~~~~D 238 (746)
T 1tu5_A 167 FNRELPQAAGVLHHCCSYKQGG-QKLLTMNSAPRGVQ--SGDRSTWFGIY-YNI--TK-GGPYLHPV-GLELLVDHKALD 238 (746)
T ss_dssp HHTTGGGGHHHHHHHHCTTTTC-CCEEEECCSSCSSS--TTCCEEEEEEE-ECC--SS-SCGGGSEE-EEEEEEECCSSS
T ss_pred HHCHHHHHHHHHhcCCCcccCC-EEEeCccccCCcCC--CCcEEEEEEEE-Eec--CC-CCccccce-eeEEEEeCCCCC
Confidence 999999999998664 5555 88999976754432 46899998886 432 23 79999999 799999997
Q ss_pred --CcEEEEEecCc-------------------cccCCCCCCCCCCCCCC--cCCCCCCCCCCCCcccCCCCCeEEEeceE
Q 004700 293 --NMVVIEFEDRK-------------------LVPLPPADPLRNYTRGE--TRGGVDRSDVKPLQIVQPEGPSFRVNGYF 349 (735)
Q Consensus 293 --~~~vi~i~d~~-------------------~~p~p~~~~~~~y~~~~--~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~ 349 (735)
++||++|.+.+ .+++| .+|.+.. .+....|.++ ||+|+||||+||+|+|+.
T Consensus 239 ~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p-----~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~ 312 (746)
T 1tu5_A 239 PADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIP-----DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNR 312 (746)
T ss_dssp GGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCC-----C-----------------------------CEEEETTE
T ss_pred cccCEEEEEEECCCccCchhhhhcccccCCcccccCc-----cccCcccccccccccCCCC-CcceeCCCCCCEEecCCc
Confidence 69999997432 11222 1254433 3221125555 999999999999999999
Q ss_pred EeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCC
Q 004700 350 VQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCD 429 (735)
Q Consensus 350 V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~D 429 (735)
|+||||+||||||+||||+||||+|+ | |+|+||+|||||+||||||++++.+|+|||. +||+|.+||+|++|||
T Consensus 313 V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~-~yG~G~~a~~L~~GcD 386 (746)
T 1tu5_A 313 VASSLWTFSFGLGAFSGPRVFDVRFQ----G-ERLAYEISLQEAGAVYGGNTPAAMLTRYMDS-GFGMGYFATPLIRGVD 386 (746)
T ss_dssp EEESSEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGG-GTCTTTTBCCCCBTTT
T ss_pred ccCCCcEEEEecCCCCceEEEeeEEC----C-eeEEEEEEeeeEEeecCCCCchhhcceeecc-ccCcccccccCccCCC
Confidence 99999999999999999999999997 4 7899999999999999999766766666666 5999999999999999
Q ss_pred CCCCeeEeceeeecCCCCeEEeeceEEEeeecCCc-cccccc--ccCCceeeeecceEEEEEeeeecccceeEEEEEecC
Q 004700 430 CLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQD--WRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQD 506 (735)
Q Consensus 430 Cpg~i~YlDa~~~~~~G~p~~~~naICifE~D~Gi-lwkH~d--~r~g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~D 506 (735)
|||+|+|||+++++.+|+|++++|||||||+|+|+ ||||+| |+ +.++++|+|+||||+|+|||||||||||+||||
T Consensus 387 Cpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~-~~~~v~r~r~LVvr~i~TVgNYdYi~~w~F~qd 465 (746)
T 1tu5_A 387 CPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS-HYFGGVAQTVLVFRSVSTMLNADYVWDMVFYPN 465 (746)
T ss_dssp BCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC-CCCCEEEEEEEEEEEEEEETTEEEEEEEEECTT
T ss_pred CCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC-CceeeecccEEEEEEEEeecccceEEEEEEecC
Confidence 99999999999999999999999999999999998 999999 78 788999999999999999999999999999999
Q ss_pred CeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeeccCCCCCCcccEEEEEeeeecCCCCCCCCCc
Q 004700 507 GKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNN 586 (735)
Q Consensus 507 GtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~n 586 (735)
|+||+||+|||||++.++.+++ .+|||+|+|+++|++|||+||||||||||| ++|||++++++..+. .|||++
T Consensus 466 G~Ie~ev~aTGil~t~~~~~~~-~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~~~--~np~~~ 538 (746)
T 1tu5_A 466 GAIEVKLHATGYISSAFLFGAA-RRYGNQVGEHTLGPVHTHSAHYKVDLDVGG----LENWVWAEDMAFVPT--AIPWSP 538 (746)
T ss_dssp SCEEEEEEEEECCCCEECCTTG-GGGEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--EETTEE
T ss_pred CcEEEEEEecceEeeeecCCCC-CCCcceecCCccccccceEEEEEecccccC----CCCEEEEEeeEEccc--CCCCCc
Confidence 9999999999999999987654 789999999999999999999999999998 799999999987764 499999
Q ss_pred c-----eEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEecCCCCCCCCCCCchhhhhhhccccceEE
Q 004700 587 A-----FYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWV 661 (735)
Q Consensus 587 ~-----~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwV 661 (735)
+ |++++|++++|++|++++++.++|+| |+|++++|++|+|+||||+|++++.+|+.++|...+||+||+|||||
T Consensus 539 ~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwV 617 (746)
T 1tu5_A 539 EHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAI 617 (746)
T ss_dssp EEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEE
T ss_pred ccccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEE
Confidence 9 99999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcCCCCCCCCCCCCC--CCChhhhcccCCceecCCcEEEEEecccccCCCccchhhh
Q 004700 662 TAYARDEMFPGGEFPNQNPRI--GEGLPAWVKQNRPLEESDIVLWFVELLLCLSLLKLLMNSY 722 (735)
Q Consensus 662 T~y~d~E~~asg~y~nq~~~~--~~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~ED~Pnt~ 722 (735)
|||+|+|+||+|+| ||+.++ ..+|++|+ +||+|+|+|||||||||+||+||+||+|++.
T Consensus 618 T~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~ 678 (746)
T 1tu5_A 618 TQRKETEPSSSSVF-NQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTV 678 (746)
T ss_dssp EECCTTCCCSSCTT-TTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBC
T ss_pred eccCCCcccCCccc-cccCCCCCCccHhhhc-CCCCccCCceEEEEecccccCCChhccCccC
Confidence 99999999999999 666442 25799999 9999999999999999999999999999973
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=5.5e-147 Score=1266.59 Aligned_cols=598 Identities=23% Similarity=0.296 Sum_probs=510.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004700 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (735)
Q Consensus 78 ~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (735)
.-++..||++|++++.+.|.+.. ++.+.......|.||.|+++|++ +|+|+++|.+++++++ +|+|+
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~-------~l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P~R~ 76 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKK-------ELRLQPSSTTTMAKNTVFLIEML-LPKKYHVLRFLDKGER-----HPVRE 76 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCG-------GGCBCCTTSSCSSSEEEEEEEEE-CCCHHHHHHHHHHCCC-----CCCCE
T ss_pred CCccccCCHHHHHHHHHHHhcCC-------CCCCcccccCCccCCeEEEEEec-CCCchhhhhhhcCCCC-----CCCcc
Confidence 35699999999999999999753 24445556777899999999998 8999999999999875 78999
Q ss_pred EEEEEEECCCCc--EEEEEE-eCCcccc----cccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHc-----ChhHH
Q 004700 158 ARLVVYNKKSNE--TSIWIV-ELSQVHA----VTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKA-----FPPFK 225 (735)
Q Consensus 158 A~vv~~~~~~~~--~~e~vV-~L~~~~~----~~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~-----~p~~~ 225 (735)
|+|+++++++.. +.|++| +||.+.. .+|+|+ .+|+..++++..|+.++.+++++ ++.++
T Consensus 77 A~vvi~fG~~~~P~v~Ey~VGPLP~p~~~~~l~~~~~~---------~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (731)
T 3hi7_A 77 ARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGY---------QSSWASRPISTAEYALLYHTLQEATKPLHQFFL 147 (731)
T ss_dssp EEEEEEECSSSSCEEEEEEEECSSSCCEEEEESCCTTC---------CCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred eEEEEEcCCCCCCeeEEEEEcCCCCCCeeeecccCCCC---------cCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999998764 999999 9985211 122222 45556699999999999998886 23333
Q ss_pred HHH-HHc-CCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCc-----EEEE
Q 004700 226 EAM-KKR-GIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNM-----VVIE 298 (735)
Q Consensus 226 ea~-~~~-Gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~-----~vi~ 298 (735)
+.+ ..+ +|++.|+++.+.-|.|+.+ ++|. .|+.|+|. .+++|+||+ ||+++||+.++ +|.+
T Consensus 148 ~~~~~~~~~~~~~cL~~~~~~P~~~~s-----g~r~-~W~~~~~~-----~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~ 215 (731)
T 3hi7_A 148 NTTGFSFQDCHDRCLAFTDVAPRGVAS-----GQRR-SWLIIQRY-----VEGYFLHPT-GLELLVDHGSTDAGHWAVEQ 215 (731)
T ss_dssp HHHSCBSSSCSSSBEEEEECSSCSSST-----TCCE-EEEEEEEC-----STTGGGCEE-EEEEEEECCSSSGGGCEEEE
T ss_pred HHhCceecCCCCCEEeeecCCCCccCC-----CCEE-Eehheecc-----CCCceeecc-ceEEEEecCCCChHHcEEEE
Confidence 333 111 3566788888888888743 3365 89999997 468999999 89999999998 4554
Q ss_pred Ee-----------------cCccccC--CCCCCCC----------CCCCCCcCCC-CCCCCCCCCcccCCCCCeEEEece
Q 004700 299 FE-----------------DRKLVPL--PPADPLR----------NYTRGETRGG-VDRSDVKPLQIVQPEGPSFRVNGY 348 (735)
Q Consensus 299 i~-----------------d~~~~p~--p~~~~~~----------~y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~Vdg~ 348 (735)
|- ++.+..+ +.....+ .|..-..++. .+++++|||+|+||||+||+|+|+
T Consensus 216 v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~ 295 (731)
T 3hi7_A 216 VWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGN 295 (731)
T ss_dssp EEETTEECSSHHHHHHHHHTTCCCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETT
T ss_pred EEECCEecCCHHHHHHHHhCCCeeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCC
Confidence 32 2333222 2111111 1332233332 237899999999999999999999
Q ss_pred EEeeeceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCC
Q 004700 349 FVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGC 428 (735)
Q Consensus 349 ~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~ 428 (735)
+|+||||+||||||+||||+||||+|+| |+|+||+|||||+||||||+++|++|+|||+| ||||.+||+|+|||
T Consensus 296 ~V~W~~W~F~vgfn~reGlvL~dV~y~g-----r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGc 369 (731)
T 3hi7_A 296 AVLYGGWSFAFRLRSSSGLQVLNVHFGG-----ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGI 369 (731)
T ss_dssp EEEEBTEEEEEEEETTTEEEEEEEEETT-----EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTT
T ss_pred EEEecCcEEEEecCCCCCcEEEeEEECC-----eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCC
Confidence 9999999999999999999999999983 78999999999999999999999999999999 99999999999999
Q ss_pred CCCCCeeEeceeeecCCCCeEEeeceEEEeeecCCc-ccccc--cccCCc--eeeeecceEEEEEeeeecccceeEEEEE
Q 004700 429 DCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQ--DWRTGF--AEVRRSRRLTVSFICTVANYEYGFYWHF 503 (735)
Q Consensus 429 DCpg~i~YlDa~~~~~~G~p~~~~naICifE~D~Gi-lwkH~--d~r~g~--~~v~r~r~LVvr~I~TVgNYDYifdw~F 503 (735)
||||+|+|||+++++.+|+|++++|||||||+|+|+ +|||+ +|+++. .+++|+|+||||+|+|||||||||||+|
T Consensus 370 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F 449 (731)
T 3hi7_A 370 DCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIF 449 (731)
T ss_dssp TBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEECSSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEE
T ss_pred CCCCCCEEEeeEEecCCCCEEecCCEEEEEEeeCCeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEE
Confidence 999999999999999999999999999999999998 78996 588774 4799999999999999999999999999
Q ss_pred ecCCeEEEEEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeeccCCCCCCcccEEEEEeeeecCCCCCCC
Q 004700 504 YQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNV 583 (735)
Q Consensus 504 ~~DGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np 583 (735)
||||+||+||||||||+++++.++ ..+|||+|+|+++|++|||+||||||||||| .+|||++++++.++. .||
T Consensus 450 ~qdGsIe~eVraTGilst~~~~~~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~--~nP 522 (731)
T 3hi7_A 450 YPNGVMEAKMHATGYVHATFYTPE-GLRHGTRLHTHLIGNIHTHLVHYRVDLDVAG----TKNSFQTLQMKLENI--TNP 522 (731)
T ss_dssp CTTSCEEEEEEEEECCCEEECCGG-GGGSEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--ECT
T ss_pred ecCCeEEEEEEEEEEEeecccCCC-CCCCcceecCCcccccceeEEEEEeccccCC----CCCEEEEEeceecCC--CCC
Confidence 999999999999999999998754 3689999999999999999999999999998 799999999987764 688
Q ss_pred CCcc-----eEEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEecCCCCCCCCCCCchhhhhhhccccc
Q 004700 584 HNNA-----FYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHN 658 (735)
Q Consensus 584 ~~n~-----~~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~ 658 (735)
|+++ ++++++++++|++|+++++++++|+|+|+|+ ++|++|+|+||||+|++.+..++.++|...+||+||+||
T Consensus 523 ~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~ 601 (731)
T 3hi7_A 523 WSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYP 601 (731)
T ss_dssp TCTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCS
T ss_pred CCCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccc
Confidence 8876 5889999999999999999999999999999 789999999999999876666666889888999999999
Q ss_pred eEEeeccCCCcCCCCCCCCCCCCCC-CChhhhcccCCceecCCcEEEEEecccccCCCccchhhhh
Q 004700 659 LWVTAYARDEMFPGGEFPNQNPRIG-EGLPAWVKQNRPLEESDIVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 659 lwVT~y~d~E~~asg~y~nq~~~~~-~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
||||||+|+|+||+|+|++|+++.+ +||++|+++||+|+|||||||||||||||||+||+|++.+
T Consensus 602 lwVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMpt 667 (731)
T 3hi7_A 602 LAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTAT 667 (731)
T ss_dssp EEEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCS
T ss_pred eEEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCcccc
Confidence 9999999999999999977776533 6899999999999999999999999999999999999844
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=1.5e-145 Score=1256.24 Aligned_cols=603 Identities=19% Similarity=0.291 Sum_probs=509.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCC
Q 004700 74 RPQTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKL 153 (735)
Q Consensus 74 ~~~~~HPLDpLs~~EI~~a~~iv~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~ 153 (735)
.++-.+++..||++|++++.+.|.+... +.+....-..|.||.|+++|++ +|+|+++|.+++++++ +
T Consensus 61 ~ap~~~vfadLs~~E~~aV~~~L~~~~~-------l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~ 127 (797)
T 3pgb_A 61 KAPKENVWYGLTDDETADVAKWLFGRPE-------LNLTTTENAGEWDNTIALIELH-RPNKSEAIPYLDGSGP-----A 127 (797)
T ss_dssp CCSSCCSSSCCCHHHHHHHHHHHHTCTT-------TCCCCTTTCCSSSEEEEEEEEE-CCCHHHHHHHHHC--------C
T ss_pred cCCCCCcccccCHHHHHHHHHHHhcCCC-------CCCcccccCCccCCeEEEEEee-CCCHHHHHHhhcCCCC-----C
Confidence 3445899999999999999999998632 3444445677899999999987 8999999999999885 7
Q ss_pred CCceEEEEEEECCCCc--EEEEEE-eCCcccc-------c---ccCccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHc
Q 004700 154 PPRRARLVVYNKKSNE--TSIWIV-ELSQVHA-------V---TRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKA 220 (735)
Q Consensus 154 P~R~A~vv~~~~~~~~--~~e~vV-~L~~~~~-------~---~~~~~~~~~v~~~~~l~~~~p~~~~~E~~~~e~~~~~ 220 (735)
|+|+|+|+++++++.+ +.|++| +||.+.. . .++|+ .+|...++++..|+..+.++++.
T Consensus 128 P~R~A~vvi~fG~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g---------~~~~~~r~~~~~e~~~l~~~~~~ 198 (797)
T 3pgb_A 128 PTRHAHVRLNNRATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQG---------QVRNVEPDGETVYSEWLFKISAS 198 (797)
T ss_dssp CCCEEEEEEEECSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTT---------EEECSCCCTTHHHHTTHHHHHHH
T ss_pred CCeeEEEEEEcCCCCCCceEEEEEcCCCCCCcceeEEccccccCCCCC---------CCCcccCcchhhHHHHHHHHHHH
Confidence 8999999999998764 999999 9986411 0 11122 34667788899999999999987
Q ss_pred ChhHHHHHHH---cCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCc---
Q 004700 221 FPPFKEAMKK---RGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNM--- 294 (735)
Q Consensus 221 ~p~~~ea~~~---~Gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~l~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~--- 294 (735)
-......+.. .|+.+.++++.+.-|.|+.+ ++|. +|++|+|...+ ..+++|+||+ ||+++||+.++
T Consensus 199 ~~~~~~~l~~~t~~~~~~~~L~~~~~~P~g~~s-----g~r~-~W~~~~~~~~g-~~d~~~lhP~-gl~~lvDh~~~Dps 270 (797)
T 3pgb_A 199 IADITLDLWNGTALGLENDTLDIWGIDPLWQDD-----GRII-RWDMFWNMADD-EFDSETLLPL-GLYLKSDVTGRDPS 270 (797)
T ss_dssp THHHHHHHHSCCCSSSTTCCEEEEECSSCBCST-----TCCE-EEEEEEECCCT-TCCCGGGCEE-EEEEEEECCSSCGG
T ss_pred HHHHHHHHhhcccccCCCCeEeeeccCCCCcCC-----CCEE-EeeeeeccCCC-ccccceeecc-ceEEEEecCCCChh
Confidence 5544444432 34555667777777777643 3354 89999997321 1356999999 89999999988
Q ss_pred --EEEEEe-----------------cCccccCCCCCCCCCCCCCCcCCC-CCCCCCCCCcccCCCCCeEEEe--ceEEee
Q 004700 295 --VVIEFE-----------------DRKLVPLPPADPLRNYTRGETRGG-VDRSDVKPLQIVQPEGPSFRVN--GYFVQW 352 (735)
Q Consensus 295 --~vi~i~-----------------d~~~~p~p~~~~~~~y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~Vd--g~~V~W 352 (735)
+|.+|- ++.+..+.+. ..+.|.....++. .+|+++|||+|+||||+||+|+ ||+|+|
T Consensus 271 ~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~-~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W 349 (797)
T 3pgb_A 271 QWKLLGWMYNDIFYETTEEFRKAYWSPGFVKLKPN-VDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTW 349 (797)
T ss_dssp GCEEEEEEETTEEESSHHHHHHHHTSTTCCCCCCC-CCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEE
T ss_pred HcEEEEEEECCEecCCHHHHHHHHhCCCeeecCCC-CCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEe
Confidence 444432 2333333221 1245543233332 2488999999999999999998 799999
Q ss_pred eceEEEEEecCCcceeEEeEEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCC
Q 004700 353 QKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG 432 (735)
Q Consensus 353 q~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~G~DCpg 432 (735)
|||+||||||+||||+||||+|+ | |||+||+|||||+|||||+ +|+++|++||+||||||.+||+|+|||||||
T Consensus 350 ~~W~F~vgfn~ReGlvL~dV~y~----g-r~V~YrlSlsEm~VPYg~~-~P~~~~~af~D~eyG~G~~an~L~lGcDCpg 423 (797)
T 3pgb_A 350 MDFSFYIAFNRDTGLSLFDIKYK----G-QRVLYELGLQEALAHYAAN-DPVQSSVAYLDSYYGFGPYAFELLKGYDCPS 423 (797)
T ss_dssp TTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCS-SHHHHHCEEEGGGTCSGGGCCCCCBTTTBCT
T ss_pred CCcEEEEecCCCCceEEEccccC----C-eeEEEEeEeeeeEEeCCCC-ChhhhcceeeecccCCccccccCccCCCCCC
Confidence 99999999999999999999997 3 7899999999999999995 5899999999999999999999999999999
Q ss_pred CeeEeceeeecCCCCeEEeeceEEEeeecCCc-ccccccccCCceeeeecceEEEEEeeeecccceeEEEEEecCCeEEE
Q 004700 433 YIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEA 511 (735)
Q Consensus 433 ~i~YlDa~~~~~~G~p~~~~naICifE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNYDYifdw~F~~DGtIe~ 511 (735)
+|+|||+++++. |+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||||||||||+|||||+||+
T Consensus 424 ~i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~--~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~ 500 (797)
T 3pgb_A 424 YASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS--EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGV 500 (797)
T ss_dssp TCEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS--SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEEE
T ss_pred CCEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC--CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEEE
Confidence 999999999987 7899999999999999997 9999985 78999999999999999999999999999999999999
Q ss_pred EEEEeeeeEeeecCCCCCCCCcccccCCCccccceeeEEEEEeeccCCCCCCcccEEEEEeeeecCC---CCCCCCCcce
Q 004700 512 EVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAF 588 (735)
Q Consensus 512 ev~aTGil~t~~~~~~~~~~yGt~V~p~~~g~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~n~~ 588 (735)
||||||||+++.+. + ..+|||+|+|+++|++|||+||||||||||| .+|||++++++..+. +..+|++|+|
T Consensus 501 eVraTGiLst~~~~-~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~~~p~~p~~~~n~~ 574 (797)
T 3pgb_A 501 EVRASGYIQSAYYA-N-NQDFGYQIHDSLSGSMHDHVLNFKADFDILG----PNNTIELVSVVPVTKQFSWSGNKTRNTM 574 (797)
T ss_dssp EEEEEECCCCEECT-T-CGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEECTTTTTCEEEEE
T ss_pred EEEEEEEEEecccC-C-CCCccceecCCccccccceEEEEeeccCCCC----CCCeEEEEeeEEccCCCCCCCCccccee
Confidence 99999999999653 4 5789999999999999999999999999998 799999999887642 2334677889
Q ss_pred EEEEEEeehhhhhhhccCCCCCeEEEEEeCCccCCCCCceeEEEecCCCCCCCCCCCch-hhhhhhccccceEEeeccCC
Q 004700 589 YAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLKHNLWVTAYARD 667 (735)
Q Consensus 589 ~~~~t~~~tE~~a~~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~-~~~ra~fa~~~lwVT~y~d~ 667 (735)
+++++++++|++|+++++++++|+|+|+|++++|++|+|+||||+|+.++++|+.++|. ..+||+||+||||||||+|+
T Consensus 575 ~~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~ 654 (797)
T 3pgb_A 575 QLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDF 654 (797)
T ss_dssp EEEEEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTT
T ss_pred EEEEEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCC
Confidence 99999999999999999999999999999999999999999999999888888888886 56889999999999999999
Q ss_pred CcCCCCCCCCCCCCCC-CChhhhcccCCceecCCcEEEEEecccccCCCccchhhhh
Q 004700 668 EMFPGGEFPNQNPRIG-EGLPAWVKQNRPLEESDIVLWFVELLLCLSLLKLLMNSYL 723 (735)
Q Consensus 668 E~~asg~y~nq~~~~~-~gl~~~~~~~esI~~eDiVlW~t~G~~HiPr~ED~Pnt~~ 723 (735)
|+||+|+|++|+++.+ .+|.+|+ +||+|+|||||||||||||||||+||+|+|..
T Consensus 655 E~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~M 710 (797)
T 3pgb_A 655 EPTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVF 710 (797)
T ss_dssp CCCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCT
T ss_pred ccCCCCCCcccCCCCCccchhhhc-CCCccccCceEEEEecccccCCChhhCCCccC
Confidence 9999999999997642 5788999 99999999999999999999999999999654
No 10
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=11.15 E-value=3.4e+02 Score=22.42 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=11.3
Q ss_pred CceEEEEEEECCCC
Q 004700 155 PRRARLVVYNKKSN 168 (735)
Q Consensus 155 ~R~A~vv~~~~~~~ 168 (735)
||+|++|-..++..
T Consensus 8 PReA~iV~veKG~~ 21 (71)
T 2kvt_A 8 PREAYIVTIEKGKP 21 (71)
T ss_dssp CCCEEEEEEEEECS
T ss_pred CcceEEEEeecCCC
Confidence 79999998886544
Done!