Query 004703
Match_columns 735
No_of_seqs 379 out of 2144
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 11:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-133 2E-138 1145.1 40.0 458 212-715 7-476 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 1E-129 3E-134 1125.5 39.3 464 214-716 17-498 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 7E-128 2E-132 1112.7 41.9 460 213-714 3-474 (702)
4 KOG1157 Predicted guanosine po 100.0 3E-120 7E-125 960.8 33.8 536 130-716 6-543 (543)
5 TIGR00691 spoT_relA (p)ppGpp s 100.0 8E-120 2E-124 1046.7 39.9 438 236-716 1-450 (683)
6 PF13328 HD_4: HD domain; PDB: 100.0 7.3E-39 1.6E-43 308.6 5.4 152 236-391 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 100.0 6.4E-29 1.4E-33 232.5 11.5 119 428-547 2-129 (129)
8 PF04607 RelA_SpoT: Region fou 100.0 2.4E-29 5.2E-34 230.2 7.8 108 449-558 1-114 (115)
9 COG2357 PpGpp synthetase catal 99.9 2.2E-26 4.7E-31 234.1 14.0 113 444-558 52-177 (231)
10 PF02824 TGS: TGS domain; Int 99.3 2.9E-13 6.2E-18 112.3 2.1 59 625-696 2-60 (60)
11 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.5E-09 3.2E-14 94.6 3.3 54 635-696 23-76 (76)
12 cd01666 TGS_DRG_C TGS_DRG_C: 98.7 6.3E-09 1.4E-13 90.5 3.7 55 635-696 17-75 (75)
13 cd01668 TGS_RelA_SpoT TGS_RelA 98.3 8E-07 1.7E-11 72.0 4.9 52 635-696 9-60 (60)
14 TIGR03276 Phn-HD phosphonate d 98.1 9.1E-06 2E-10 81.6 8.3 71 244-314 13-102 (179)
15 cd04938 TGS_Obg-like TGS_Obg-l 97.9 8.5E-06 1.9E-10 71.1 3.8 53 635-696 24-76 (76)
16 PRK09602 translation-associate 97.9 1.4E-05 3.1E-10 89.2 5.3 55 635-697 341-395 (396)
17 cd01616 TGS The TGS domain, na 97.7 4.1E-05 8.8E-10 60.3 3.9 52 635-696 9-60 (60)
18 PRK05659 sulfur carrier protei 97.4 0.00046 1E-08 57.8 6.2 58 627-698 3-63 (66)
19 PRK00413 thrS threonyl-tRNA sy 97.3 0.00036 7.8E-09 82.1 6.6 79 635-723 10-97 (638)
20 cd00565 ThiS ThiaminS ubiquiti 97.3 0.0005 1.1E-08 57.8 5.6 52 635-698 7-62 (65)
21 cd01667 TGS_ThrRS_N TGS _ThrRS 97.3 0.00036 7.9E-09 55.3 4.3 52 635-696 9-60 (61)
22 PRK06437 hypothetical protein; 97.3 0.00069 1.5E-08 57.7 6.2 58 629-698 7-64 (67)
23 PRK01777 hypothetical protein; 97.2 0.0011 2.4E-08 60.5 6.9 57 635-696 19-75 (95)
24 TIGR01683 thiS thiamine biosyn 97.0 0.0013 2.7E-08 55.2 5.6 53 635-698 6-61 (64)
25 PRK07440 hypothetical protein; 97.0 0.0016 3.4E-08 56.1 6.1 59 626-698 6-67 (70)
26 PRK06944 sulfur carrier protei 97.0 0.0018 3.9E-08 54.0 6.0 52 635-698 8-62 (65)
27 COG2104 ThiS Sulfur transfer p 96.8 0.0029 6.3E-08 54.4 6.3 53 635-698 10-65 (68)
28 PRK08053 sulfur carrier protei 96.8 0.003 6.6E-08 53.4 6.3 58 627-698 3-63 (66)
29 PRK07696 sulfur carrier protei 96.8 0.0023 4.9E-08 54.6 5.4 52 635-698 8-64 (67)
30 PRK08364 sulfur carrier protei 96.7 0.0038 8.3E-08 53.5 6.0 51 636-698 17-67 (70)
31 PRK05863 sulfur carrier protei 96.3 0.0069 1.5E-07 51.2 5.3 58 627-698 3-62 (65)
32 PRK06488 sulfur carrier protei 96.2 0.011 2.3E-07 49.7 5.6 56 627-698 3-62 (65)
33 PRK14707 hypothetical protein; 96.1 0.023 5E-07 73.1 10.3 107 446-558 2306-2424(2710)
34 PRK06083 sulfur carrier protei 95.9 0.014 3.1E-07 52.1 5.3 58 627-698 21-81 (84)
35 PTZ00258 GTP-binding protein; 95.8 0.0098 2.1E-07 66.8 4.6 57 635-698 316-388 (390)
36 PLN02908 threonyl-tRNA synthet 95.7 0.019 4.2E-07 68.7 7.2 88 624-724 52-148 (686)
37 PRK12444 threonyl-tRNA synthet 95.7 0.021 4.5E-07 67.8 7.2 79 635-723 14-101 (639)
38 PF14451 Ub-Mut7C: Mut7-C ubiq 95.4 0.021 4.6E-07 50.7 4.3 50 636-697 26-76 (81)
39 PRK09601 GTP-binding protein Y 95.1 0.015 3.3E-07 64.7 3.3 57 634-696 291-362 (364)
40 cd00754 MoaD Ubiquitin domain 95.1 0.027 5.8E-07 48.4 4.0 60 635-698 18-77 (80)
41 COG1163 DRG Predicted GTPase [ 95.0 0.014 3E-07 63.8 2.5 55 635-696 306-364 (365)
42 PLN02799 Molybdopterin synthas 94.9 0.025 5.4E-07 49.4 3.4 59 635-698 21-79 (82)
43 PF03658 Ub-RnfH: RnfH family 94.7 0.026 5.6E-07 50.6 2.9 52 635-696 16-72 (84)
44 PRK11840 bifunctional sulfur c 94.3 0.076 1.6E-06 58.3 6.1 52 635-697 8-62 (326)
45 PF02597 ThiS: ThiS family; I 94.2 0.038 8.2E-07 47.0 2.9 58 635-698 14-74 (77)
46 smart00471 HDc Metal dependent 93.8 0.07 1.5E-06 46.8 3.9 37 252-288 2-44 (124)
47 PF01966 HD: HD domain; Inter 93.0 0.11 2.5E-06 46.2 4.0 33 256-288 2-41 (122)
48 TIGR01682 moaD molybdopterin c 92.3 0.23 5E-06 43.2 4.8 59 635-698 18-77 (80)
49 COG2914 Uncharacterized protei 91.5 0.51 1.1E-05 43.3 6.1 61 636-709 20-90 (99)
50 PRK09169 hypothetical protein; 91.4 0.67 1.4E-05 61.3 9.3 121 432-558 1901-2034(2316)
51 TIGR03401 cyanamide_fam HD dom 90.9 1.6 3.4E-05 45.9 10.0 125 226-371 34-179 (228)
52 PRK12703 tRNA 2'-O-methylase; 89.1 2.3 5E-05 47.3 10.0 148 232-401 171-331 (339)
53 PRK14707 hypothetical protein; 88.9 1.3 2.8E-05 58.2 8.7 100 452-557 2544-2654(2710)
54 TIGR01687 moaD_arch MoaD famil 86.5 1 2.2E-05 39.7 4.3 62 635-698 18-85 (88)
55 PRK11130 moaD molybdopterin sy 85.7 1.2 2.6E-05 39.0 4.4 60 636-698 18-78 (81)
56 COG1418 Predicted HD superfami 75.7 4.2 9.2E-05 42.5 5.0 39 251-289 33-76 (222)
57 COG4341 Predicted HD phosphohy 74.5 3.1 6.7E-05 41.9 3.4 35 250-284 24-60 (186)
58 PRK10119 putative hydrolase; P 73.2 13 0.00028 39.3 7.9 52 232-286 6-62 (231)
59 cd01764 Urm1 Urm1-like ubuitin 72.1 7.1 0.00015 35.6 4.9 62 637-698 21-91 (94)
60 TIGR02988 YaaA_near_RecF S4 do 71.3 3.6 7.8E-05 33.8 2.6 24 671-694 35-58 (59)
61 cd00077 HDc Metal dependent ph 70.6 3.4 7.4E-05 36.6 2.6 35 254-288 2-44 (145)
62 PF01479 S4: S4 domain; Inter 69.8 2.7 5.9E-05 32.8 1.5 22 671-692 27-48 (48)
63 COG1977 MoaD Molybdopterin con 65.5 4.7 0.0001 35.8 2.3 57 640-698 25-81 (84)
64 COG0012 Predicted GTPase, prob 63.9 2.8 6.2E-05 47.0 0.8 48 635-693 320-367 (372)
65 PRK14137 recX recombination re 60.0 9.8 0.00021 39.2 3.8 105 393-500 38-147 (195)
66 PRK14136 recX recombination re 58.6 8.4 0.00018 42.4 3.2 97 401-501 168-271 (309)
67 TIGR00277 HDIG uncharacterized 57.9 16 0.00035 30.2 4.2 34 253-286 3-41 (80)
68 PF13510 Fer2_4: 2Fe-2S iron-s 57.9 14 0.00031 32.6 3.9 64 626-693 5-78 (82)
69 PRK03826 5'-nucleotidase; Prov 56.2 21 0.00046 36.8 5.4 35 253-287 27-72 (195)
70 smart00363 S4 S4 RNA-binding d 54.6 10 0.00022 29.2 2.3 26 671-696 27-52 (60)
71 PTZ00305 NADH:ubiquinone oxido 53.5 58 0.0013 35.9 8.4 82 625-714 69-158 (297)
72 KOG1573 Aldehyde reductase [Ge 53.4 62 0.0013 32.9 7.9 53 232-284 74-127 (204)
73 PF12917 HD_2: HD containing h 51.6 14 0.00031 38.7 3.3 101 253-360 28-143 (215)
74 COG1896 Predicted hydrolases o 51.6 32 0.00069 35.4 5.8 99 250-359 29-141 (193)
75 COG1078 HD superfamily phospho 48.6 10 0.00022 43.5 1.9 30 256-285 53-96 (421)
76 PF06071 YchF-GTPase_C: Protei 47.0 12 0.00027 33.8 1.8 57 634-695 12-82 (84)
77 PRK12704 phosphodiesterase; Pr 46.9 52 0.0011 38.9 7.4 37 251-287 332-373 (520)
78 PF13023 HD_3: HD domain; PDB: 46.5 49 0.0011 32.9 6.2 96 252-360 20-129 (165)
79 PRK00106 hypothetical protein; 45.0 72 0.0016 37.9 8.1 37 251-287 347-388 (535)
80 PRK13480 3'-5' exoribonuclease 44.7 76 0.0017 35.1 7.8 32 255-286 160-197 (314)
81 PRK12705 hypothetical protein; 43.8 84 0.0018 37.1 8.4 37 251-287 320-361 (508)
82 cd04867 TGS_YchF_C TGS_YchF_C: 43.6 16 0.00034 33.1 1.9 57 635-695 13-82 (83)
83 PRK11507 ribosome-associated p 43.6 19 0.00042 31.5 2.4 25 671-695 38-62 (70)
84 TIGR00488 putative HD superfam 43.5 26 0.00056 34.3 3.6 34 253-286 7-45 (158)
85 cd08780 Death_TRADD Death Doma 43.1 1.1E+02 0.0023 28.2 7.1 75 367-443 2-81 (90)
86 COG1713 Predicted HD superfami 42.8 27 0.00059 36.0 3.8 37 253-289 16-57 (187)
87 COG1188 Ribosome-associated he 42.7 18 0.0004 33.7 2.3 25 671-696 35-59 (100)
88 KOG1637 Threonyl-tRNA syntheta 42.5 15 0.00031 42.7 1.9 84 627-724 4-95 (560)
89 PF13275 S4_2: S4 domain; PDB: 42.4 13 0.00027 32.1 1.1 24 671-694 34-57 (65)
90 TIGR00295 conserved hypothetic 42.3 32 0.0007 34.1 4.1 58 252-309 11-86 (164)
91 PF05153 DUF706: Family of unk 40.9 45 0.00098 35.8 5.1 53 232-284 40-93 (253)
92 PRK08493 NADH dehydrogenase su 40.8 94 0.002 38.8 8.5 80 627-714 4-88 (819)
93 cd00165 S4 S4/Hsp/ tRNA synthe 40.0 26 0.00056 27.8 2.6 26 671-696 27-52 (70)
94 PRK07569 bidirectional hydroge 39.9 1.2E+02 0.0026 31.8 8.1 80 627-714 6-92 (234)
95 cd08318 Death_NMPP84 Death dom 39.6 1.3E+02 0.0029 26.8 7.2 73 366-443 6-79 (86)
96 TIGR03319 YmdA_YtgF conserved 39.5 97 0.0021 36.6 8.0 35 252-286 327-366 (514)
97 COG0079 HisC Histidinol-phosph 38.7 1.5E+02 0.0032 33.3 9.0 114 385-498 218-352 (356)
98 PRK12792 flhA flagellar biosyn 37.1 1.2E+02 0.0026 37.1 8.5 120 271-403 480-609 (694)
99 PF00498 FHA: FHA domain; Int 36.3 16 0.00035 30.0 0.9 24 671-694 43-67 (68)
100 COG2501 S4-like RNA binding pr 36.1 25 0.00053 31.1 1.9 25 671-695 38-62 (73)
101 COG3383 Uncharacterized anaero 35.6 57 0.0012 40.2 5.3 82 625-714 6-93 (978)
102 PRK01286 deoxyguanosinetriphos 34.5 41 0.00089 37.6 3.8 32 255-286 63-99 (336)
103 PF13085 Fer2_3: 2Fe-2S iron-s 33.7 55 0.0012 30.9 4.0 62 636-697 22-92 (110)
104 COG2316 Predicted hydrolase (H 33.6 75 0.0016 32.5 5.1 61 253-313 46-121 (212)
105 PF14453 ThiS-like: ThiS-like 33.5 1.3E+02 0.0029 25.4 5.7 48 635-696 8-55 (57)
106 TIGR00384 dhsB succinate dehyd 33.3 51 0.0011 34.2 4.1 63 636-699 18-89 (220)
107 PRK07152 nadD putative nicotin 32.6 45 0.00098 36.9 3.8 35 253-287 195-234 (342)
108 COG1710 Uncharacterized protei 32.3 50 0.0011 31.9 3.4 56 425-480 61-124 (139)
109 PRK06645 DNA polymerase III su 32.3 9.2E+02 0.02 28.6 14.8 67 287-366 241-311 (507)
110 TIGR01399 hrcV type III secret 30.6 1.3E+02 0.0027 36.9 7.2 129 262-402 454-594 (677)
111 PRK03007 deoxyguanosinetriphos 28.2 60 0.0013 37.5 3.9 57 230-286 41-107 (428)
112 TIGR03812 tyr_de_CO2_Arch tyro 27.2 3.1E+02 0.0066 29.7 9.0 71 426-496 293-372 (373)
113 COG1034 NuoG NADH dehydrogenas 26.8 1.5E+02 0.0032 36.5 6.9 77 627-714 4-90 (693)
114 TIGR01017 rpsD_bact ribosomal 26.3 51 0.0011 34.1 2.6 27 671-697 116-142 (200)
115 PRK05327 rpsD 30S ribosomal pr 25.7 52 0.0011 34.1 2.6 27 671-697 119-145 (203)
116 TIGR01973 NuoG NADH-quinone ox 25.0 2.2E+02 0.0047 34.0 7.9 79 628-714 2-88 (603)
117 KOG2874 rRNA processing protei 25.0 59 0.0013 35.6 2.8 61 420-480 65-144 (356)
118 KOG3220 Similar to bacterial d 24.3 1.6E+02 0.0035 31.1 5.8 38 262-303 17-57 (225)
119 PRK05318 deoxyguanosinetriphos 23.9 58 0.0013 37.6 2.8 57 230-286 29-106 (432)
120 PRK15337 type III secretion sy 23.8 1.7E+02 0.0036 36.0 6.6 127 263-402 465-603 (686)
121 CHL00113 rps4 ribosomal protei 23.7 57 0.0012 33.9 2.4 26 671-696 115-140 (201)
122 cd01806 Nedd8 Nebb8-like ubiq 23.4 2.1E+02 0.0046 23.8 5.5 67 624-698 3-73 (76)
123 PF07091 FmrO: Ribosomal RNA m 23.2 2.1E+02 0.0045 31.0 6.5 139 364-511 7-166 (251)
124 PRK09111 DNA polymerase III su 23.1 1.1E+03 0.025 28.5 13.3 65 288-365 243-311 (598)
125 PF14907 NTP_transf_5: Unchara 23.0 8.2E+02 0.018 25.0 13.2 106 385-501 12-121 (249)
126 COG1578 Uncharacterized conser 22.8 5.9E+02 0.013 28.1 9.7 114 351-468 10-139 (285)
127 PF09371 Tex_N: Tex-like prote 22.7 5.1E+02 0.011 26.8 9.0 24 385-408 109-140 (193)
128 PRK14956 DNA polymerase III su 22.5 1.2E+03 0.027 27.6 13.1 96 287-394 231-331 (484)
129 PRK12577 succinate dehydrogena 22.0 1.1E+02 0.0025 33.8 4.5 43 636-679 22-69 (329)
130 COG2137 OraA Uncharacterized p 22.0 69 0.0015 32.6 2.6 100 396-500 21-130 (174)
131 TIGR03069 PS_II_S4 photosystem 21.9 66 0.0014 34.6 2.5 25 671-695 209-233 (257)
132 PRK06012 flhA flagellar biosyn 21.8 2.5E+02 0.0054 34.6 7.6 121 272-404 483-613 (697)
133 PRK13520 L-tyrosine decarboxyl 21.7 5.2E+02 0.011 27.8 9.5 71 428-498 290-369 (371)
134 cd01805 RAD23_N Ubiquitin-like 21.7 2.3E+02 0.0051 23.8 5.5 70 624-699 3-76 (77)
135 PRK09130 NADH dehydrogenase su 21.5 2.9E+02 0.0063 33.8 8.2 80 627-714 4-91 (687)
136 TIGR01398 FlhA flagellar biosy 21.4 4E+02 0.0087 32.8 9.1 120 272-403 467-596 (678)
137 PRK12720 secretion system appa 21.3 2.1E+02 0.0046 35.1 6.7 195 263-480 451-666 (675)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=9.7e-134 Score=1145.06 Aligned_cols=458 Identities=41% Similarity=0.639 Sum_probs=428.8
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCC
Q 004703 212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291 (735)
Q Consensus 212 ~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT 291 (735)
..++++++.+..+.+..+.. +.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t 85 (701)
T COG0317 7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT 85 (701)
T ss_pred ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence 34667888888888766666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHH
Q 004703 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR 370 (735)
Q Consensus 292 ~eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq 370 (735)
.++|++.||++|++||+||||++.++++. ..+..|+|++||||+||. |+||++||||||||||||+..++++||
T Consensus 86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999999999984221 123458999999999997 999999999999999999999889999
Q ss_pred HHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccc
Q 004703 371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLC 448 (735)
Q Consensus 371 ~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~ 448 (735)
+++|+||++|||||||||||+++|||||||||+||+|++|+.|.+.|.++ .|+++|++++..|++.|.++||+++ |+
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~ 239 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS 239 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence 99999999999999999999999999999999999999999999999876 4899999999999999999999996 99
Q ss_pred ccccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCC
Q 004703 449 GRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG 528 (735)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~ 528 (735)
||+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.
T Consensus 240 gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~ 319 (701)
T COG0317 240 GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPE 319 (701)
T ss_pred cCCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEeehhhHHHHHHHhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCCC
Q 004703 529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHAD 608 (735)
Q Consensus 529 g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~~ 608 (735)
|.++||||||.+||..||+|+||||+||+++. ...+...||++|++||++..| +.+|+|.+|.| +| .
T Consensus 320 g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf----~ 386 (701)
T COG0317 320 GKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LF----P 386 (701)
T ss_pred CceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-cc----C
Confidence 99999999999999999999999999999872 346788999999999999877 47899999997 45 4
Q ss_pred CCCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCC
Q 004703 609 DCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKM 688 (735)
Q Consensus 609 ~~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~ 688 (735)
|+|||||||| ++++||.||||+||||+||+++| ++|+||||||++|| |+++|++
T Consensus 387 d~VyvfTPkG----------------~vi~LP~GatplDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~ 440 (701)
T COG0317 387 DRVYVFTPKG----------------KVIDLPKGATPLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQT 440 (701)
T ss_pred ceEEEECCCC----------------CEEeCCCCCcchhhhhhhhchhc---------ceeeEEEECCEEec-cceecCC
Confidence 8999999994 79999999999999999999975 69999999999996 9999999
Q ss_pred CCEEEEee---CCCCccHH------HHHHHHHHHHH
Q 004703 689 GDVVELTP---AIPDKSLT------EYREEIQRMYE 715 (735)
Q Consensus 689 GDvVEIit---a~p~~~l~------~~r~~i~rm~~ 715 (735)
||+|||+| ..|+..|+ .+|..|+++|.
T Consensus 441 Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k 476 (701)
T COG0317 441 GDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFK 476 (701)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999 44788897 68999999993
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=1.3e-129 Score=1125.49 Aligned_cols=464 Identities=30% Similarity=0.519 Sum_probs=423.0
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 004703 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (735)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e 293 (735)
+++|+..+..+. ..+.+.|++|+.||.++|.| |++|+|||.||++||.||++++||.++|+||||||++|||.+|.+
T Consensus 17 ~~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e 93 (743)
T PRK10872 17 PDKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSED 93 (743)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHH
Confidence 345666666666 67889999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 004703 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (735)
Q Consensus 294 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~r 372 (735)
+|++.||++||.||+||||++.+....+.........|+|+||||||||+ |+||+||||||||||||||..+|++||++
T Consensus 94 ~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~ 173 (743)
T PRK10872 94 VLRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVL 173 (743)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHH
Confidence 99999999999999999999987542211001123458999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccccc
Q 004703 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (735)
Q Consensus 373 iA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR 450 (735)
+|+||++|||||||||||++||||||||||+||+|++|++|+++|.++ .|+.+|+.+++.|++.|++.||.++ |+||
T Consensus 174 iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR 252 (743)
T PRK10872 174 AAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGR 252 (743)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEee
Confidence 999999999999999999999999999999999999999999999875 4899999999999999999999996 9999
Q ss_pred ccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCCee
Q 004703 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 530 (735)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~ 530 (735)
+||+||||+||++++.+|++|+|++|+||||+++.|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.
T Consensus 253 ~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGYqSLHttv~~~~g~ 332 (743)
T PRK10872 253 PKHIYSIWRKMQKKSLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGK 332 (743)
T ss_pred cCCHHHHHHHHHHcCCCHHHhccceeEEEEECCHHHHHHHHHHHHhhccCCcchhhhcccCCCCCCcceeEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhHHHHHHHhhhhcccccCCCC--cchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCCC
Q 004703 531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHAD 608 (735)
Q Consensus 531 ~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~--~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~~ 608 (735)
++||||||..||.+||+|+||||+||++... .....+++++||++|++||++..+ +.+|++.+|.| +| .
T Consensus 333 ~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d----~~ef~e~~k~d-l~----~ 403 (743)
T PRK10872 333 TVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMAD----SGEMLDEVRSQ-VF----D 403 (743)
T ss_pred EEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHH-hc----C
Confidence 9999999999999999999999999987532 112345678999999999987544 56889999876 45 3
Q ss_pred CCCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCC
Q 004703 609 DCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKM 688 (735)
Q Consensus 609 ~~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~ 688 (735)
++||||||+| +++.||+||||+||||+||+++| ++|+||||||++|| ++++|++
T Consensus 404 d~V~VfTPkG----------------~~~~Lp~gaT~lDfAy~iHt~iG---------~~~~gAkvng~~v~-l~~~L~~ 457 (743)
T PRK10872 404 DRVYVFTPKG----------------DVVDLPAGSTPLDFAYHIHSDVG---------HRCIGAKIGGRIVP-FTYQLQM 457 (743)
T ss_pred CeEEEECCCC----------------CeEEcCCCCcHHHHHHHHhHHHH---------hhceEEEECCEECC-CCcCCCC
Confidence 7899999994 69999999999999999999975 68999999999996 9999999
Q ss_pred CCEEEEee---CCCCccHHH----------HHHHHHHHHHc
Q 004703 689 GDVVELTP---AIPDKSLTE----------YREEIQRMYER 716 (735)
Q Consensus 689 GDvVEIit---a~p~~~l~~----------~r~~i~rm~~~ 716 (735)
||+|||+| ..|+..|+. +|.+|+++|..
T Consensus 458 GD~VeIits~~~~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~ 498 (743)
T PRK10872 458 GDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRK 498 (743)
T ss_pred CCEEEEEeCCCCCCChhHhccccCeeeCHHHHHHHHHHHHH
Confidence 99999999 358889974 79999999943
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=6.9e-128 Score=1112.69 Aligned_cols=460 Identities=36% Similarity=0.558 Sum_probs=426.4
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCH
Q 004703 213 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSY 292 (735)
Q Consensus 213 ~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~ 292 (735)
.+++|+..+..+.+..+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||++|||.+|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~ 82 (702)
T PRK11092 3 LFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATY 82 (702)
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCH
Confidence 35677778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHH
Q 004703 293 DYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQ 371 (735)
Q Consensus 293 eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~ 371 (735)
++|++.||++|+.||++|||++.++.. ..+..|+|++||||++|+ |+||++|||||||||||+|..+|+++|+
T Consensus 83 e~i~~~FG~~Va~lV~gvTk~~~l~~~------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~ 156 (702)
T PRK11092 83 QDMEQLFGKSVAELVEGVSKLDKLKFR------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRR 156 (702)
T ss_pred HHHHHHHCHHHHHHHHHHHhhcccccc------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHH
Confidence 999999999999999999999887531 123458999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccc
Q 004703 372 RFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCG 449 (735)
Q Consensus 372 riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~g 449 (735)
++|+||++|||||||||||++||||||||||+||+|++|++|+++|.++ .|+++++.+++.|++.|+++||+++ |+|
T Consensus 157 ~iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~ 235 (702)
T PRK11092 157 RIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSG 235 (702)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEe
Confidence 9999999999999999999999999999999999999999999999876 4899999999999999999999996 999
Q ss_pred cccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCCe
Q 004703 450 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGL 529 (735)
Q Consensus 450 R~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g 529 (735)
|.||+||||+||++|+.+|++|+|++|+||||+++.|||++||+||++|+|+|++|||||+.||+||||||||+|.+|+|
T Consensus 236 R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~v~g~~g 315 (702)
T PRK11092 236 REKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHG 315 (702)
T ss_pred ccCCHHHHHHHHHHcCCChhHhccceeEEEEECCHHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeehhhHHHHHHHhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCCCC
Q 004703 530 VPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADD 609 (735)
Q Consensus 530 ~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~~~ 609 (735)
.++||||||..||.+||+|+||||+||++.........+.++||++|++||++..+ +.+|++.+|.+ +| +|
T Consensus 316 ~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~----~~ef~~~~~~d-l~----~d 386 (702)
T PRK11092 316 VPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGS----SFEFIESVKSD-LF----PD 386 (702)
T ss_pred cEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCC----hHHHHHHHHhh-hc----cc
Confidence 99999999999999999999999999987432122223448999999999987654 56899999976 45 48
Q ss_pred CCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCC
Q 004703 610 CPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMG 689 (735)
Q Consensus 610 ~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~G 689 (735)
+||||||+| ++++||+||||+||||+||+++| ++|+||||||++|| |+++|++|
T Consensus 387 ~v~VfTP~G----------------~v~~LP~GaT~lDFAY~iHt~iG---------~~c~gAkVNg~~vp-L~~~L~~G 440 (702)
T PRK11092 387 EIYVFTPEG----------------RIVELPAGATPVDFAYAVHTDIG---------HACVGARVDRQPYP-LSQPLTSG 440 (702)
T ss_pred eEEEECCCC----------------CEEeCCCCCchhhhhHhhCchhh---------ceeEEEEECCEECC-CCccCCCC
Confidence 999999994 79999999999999999999975 69999999999996 99999999
Q ss_pred CEEEEeeC---CCCccHH------HHHHHHHHHH
Q 004703 690 DVVELTPA---IPDKSLT------EYREEIQRMY 714 (735)
Q Consensus 690 DvVEIita---~p~~~l~------~~r~~i~rm~ 714 (735)
|+|||+|. .|+.+|+ .+|.+|+++|
T Consensus 441 d~VeIiT~~~~~P~~dWL~~v~T~rAr~kIr~~~ 474 (702)
T PRK11092 441 QTVEIITAPGARPNAAWLNFVVSSKARAKIRQLL 474 (702)
T ss_pred CEEEEEeCCCCCCChHHHHHhhhHHHHHHHHHHH
Confidence 99999993 4888997 6799999999
No 4
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-120 Score=960.83 Aligned_cols=536 Identities=68% Similarity=1.044 Sum_probs=502.2
Q ss_pred CCccccccccccccccccccccCcccchhhHhhhhhccccccCCCCcccccCCcccccCchhhhHHH-HHHhhhcccccc
Q 004703 130 SPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEG 208 (735)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 208 (735)
|||||+.|+|+.. =||||||.+.|+||||+..+. +.+| +.|.|+ .+
T Consensus 6 ~~pm~i~r~r~~~-------------~~~~~~rKae~~~v~~E~~s~----------------l~~ea~~~~me----ve 52 (543)
T KOG1157|consen 6 SPPMRISRDRNLD-------------GFNGFVRKAEGSCVDYEMDSV----------------LVDEALGFKME----VE 52 (543)
T ss_pred CCCCCCccccchh-------------hhcccCccccccccccccccc----------------ccccccCCcee----ee
Confidence 9999999999863 199999999999999993332 3466 888885 34
Q ss_pred cHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccC-chhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccc
Q 004703 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287 (735)
Q Consensus 209 ~~~~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksG-ePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVED 287 (735)
...++.+++++..+..++.++.+++.+|+.+|+++|++|+|+++ +||+.||+.+|.||+++++|+++++||+|||||||
T Consensus 53 ~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 53 LVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD 132 (543)
T ss_pred ehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Confidence 55678889999999999999999999999999999999999965 59999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCH
Q 004703 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (735)
Q Consensus 288 T~vT~eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~lp~ 367 (735)
+.+++++|++.||.+|++||++||+++.+++..|.+. .|.+.++ |++++++.||+||||||||||||+|..+||
T Consensus 133 t~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpP 206 (543)
T KOG1157|consen 133 TFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPP 206 (543)
T ss_pred ccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Confidence 9999999999999999999999999999998776543 3567777 678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecc
Q 004703 368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVL 447 (735)
Q Consensus 368 ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI~~~~V 447 (735)
.+|+++++|++.||+|||+++|++.++.+||+|||+||+|.+|.++..+|+..+++++|+..++.|++.|+.+||.++.|
T Consensus 207 vgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i 286 (543)
T KOG1157|consen 207 VGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVI 286 (543)
T ss_pred chhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcC
Q 004703 448 CGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGE 527 (735)
Q Consensus 448 ~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~ 527 (735)
+||.|++||||+||.|+++..+||+|+.|+|+||+++.|||+++|+||++|+.+|++.||||++||.||||||||+|.+.
T Consensus 287 ~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d 366 (543)
T KOG1157|consen 287 KGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVD 366 (543)
T ss_pred ecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeeeEEEEEeehhhHHHHHHHhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCC
Q 004703 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 607 (735)
Q Consensus 528 ~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~ 607 (735)
+-+|+||||||.+||..||+|.|+||+||+|. .++++.++++|++|...|..+++.+|.++... .+|.|+.|+
T Consensus 367 ~~~plevqirt~em~~~a~~g~aah~~yk~g~--~~~~~~q~~~~~~~~~~~~~~~~~kd~ss~~~-----~~~k~~s~~ 439 (543)
T KOG1157|consen 367 GTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK--TSSFVLQMVEWARWVVTWHAEIMSKDISSIKS-----SSCKFPSHQ 439 (543)
T ss_pred CcceeEEEEeeeccccccccchhhHhhhhcCC--CCHHHHHHHHHHHHHHHHHHHHHhcccccccc-----cccCCCCcc
Confidence 77899999999999999999999999999985 35688999999999999999999887654333 247899999
Q ss_pred CCCCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCC
Q 004703 608 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLK 687 (735)
Q Consensus 608 ~~~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk 687 (735)
+||+|+|.|+++++|||||+++++|+|.+.++|+.+|+.|+.-+-+++.++|.+|+.++ +.++.+.|. ++.++|+
T Consensus 440 ~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~~~~-e~lr~~~~~----d~~~k~~ 514 (543)
T KOG1157|consen 440 EDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQIPA-EELRPRLNQ----DLKYKLK 514 (543)
T ss_pred ccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhcCcH-HHhhhhhcc----chhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999887 889999998 5899999
Q ss_pred CCCEEEEeeCCCCccHHHHHHHHHHHHHc
Q 004703 688 MGDVVELTPAIPDKSLTEYREEIQRMYER 716 (735)
Q Consensus 688 ~GDvVEIita~p~~~l~~~r~~i~rm~~~ 716 (735)
+||+||.+|.+|+.+|++||++|||||+|
T Consensus 515 m~d~~~~~p~~~~~~l~e~~~~~~~m~~~ 543 (543)
T KOG1157|consen 515 MGDVVELTPHIPDTSLTEYREEIQRMYDR 543 (543)
T ss_pred hcchhhcCCCCCChhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999975
No 5
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=8.2e-120 Score=1046.75 Aligned_cols=438 Identities=40% Similarity=0.656 Sum_probs=407.9
Q ss_pred HHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHHHHHHhCHHHHHHHHHhhcccc
Q 004703 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (735)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 315 (735)
|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||++|.++|++.||++|+.||++|||++.
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHH
Q 004703 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394 (735)
Q Consensus 316 l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK 394 (735)
+.... ++..|++++||||++|. |+||++|||||||||||+|..+|+++|+++|+||++|||||||||||++||
T Consensus 81 ~~~~~------~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKS------RQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccch------hhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 75421 23458999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcCCCCCccc
Q 004703 395 VQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIH 472 (735)
Q Consensus 395 ~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~ 472 (735)
||||||||+||+|++|+.|++.|.+. .|+.+++.++..|++.|.+.||++. |+||+|++||||+||++++.+|++|+
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~ 233 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIH 233 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcc
Confidence 99999999999999999999999876 5889999999999999999999985 99999999999999999999999999
Q ss_pred cceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCCeeeEEEEEeehhhHHHHHHHhhhh
Q 004703 473 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 552 (735)
Q Consensus 473 Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~~vEVQIRT~~Mh~wAE~GvAah 552 (735)
|++|+||||+++.|||+++|+||++|+|+|++|||||+.||+||||||||+|.+|+|.++||||||..||+|||+|+|||
T Consensus 234 Di~~~RIi~~~~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaah 313 (683)
T TIGR00691 234 DLLAIRIIVKSELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQIRTEDMDRVAEYGIAAH 313 (683)
T ss_pred cceeEEEEECCHHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCCEEEEEEEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEcCC
Q 004703 553 WRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIEND 632 (735)
Q Consensus 553 w~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~~~~iyvfTPk~~~~g~vfVi~~~g~ 632 (735)
|+||++... .....+...||++|++||++..+ +.+|++.+|.+ +| .++||||||||
T Consensus 314 w~yk~~~~~-~~~~~~~~~wl~~~~~~~~~~~~----~~~~~~~~k~~-l~----~~~i~vfTPkG-------------- 369 (683)
T TIGR00691 314 WIYKEGNPQ-KEALIDDMRWLNYLVEWQQESAN----FFEFIENLKSD-LF----NEEIYVFTPKG-------------- 369 (683)
T ss_pred HhhcCCCCc-chhHHHHHHHHHHHHHHHhhccc----chhHHHHhhHH-hc----cCceEEECCCC--------------
Confidence 999987532 12245678999999999988655 56889999876 44 48899999994
Q ss_pred cceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee---CCCCccHH-----
Q 004703 633 KMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLT----- 704 (735)
Q Consensus 633 ~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit---a~p~~~l~----- 704 (735)
+++.||+||||+||||+||+++| ++|+||||||++|| ++++|++||+|||+| ..|+.+|+
T Consensus 370 --~~~~lp~gst~~DfAy~ih~~~g---------~~~~~a~vng~~v~-l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T 437 (683)
T TIGR00691 370 --DVVELPSGSTPVDFAYAVHTDVG---------NKCTGAKVNGKIVP-LDKELENGDVVEIITGKNSNPSVIWLNFVVT 437 (683)
T ss_pred --eEEEcCCCCCHHHHHHHHhHHhH---------hceeEEEECCEECC-CCccCCCCCEEEEEeCCCCCCCHHHHHHHhh
Confidence 79999999999999999999875 68999999999996 999999999999999 45888997
Q ss_pred -HHHHHHHHHHHc
Q 004703 705 -EYREEIQRMYER 716 (735)
Q Consensus 705 -~~r~~i~rm~~~ 716 (735)
.+|.+|+++|..
T Consensus 438 ~rAR~kIr~~~k~ 450 (683)
T TIGR00691 438 SKARNKIRQWLKK 450 (683)
T ss_pred HHHHHHHHHHHHH
Confidence 679999998843
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=7.3e-39 Score=308.57 Aligned_cols=152 Identities=49% Similarity=0.727 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHHHHHHhCHHHHHHHHHhhcccc
Q 004703 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (735)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 315 (735)
|+.||.++|+||++++|+||+.||++||.+|+++|+|+++++||||||++||+..+ ++|++.||++|+++|.++|+++.
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999666 99999999999999999999998
Q ss_pred cchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcc
Q 004703 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391 (735)
Q Consensus 316 l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~ 391 (735)
+..... ......+.+++|+||+++. |+||++|||||||||||++...++++++++|+||++||+|||||||||
T Consensus 80 ~~~~~~---~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPW---EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc---hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 865411 1134568899999999996 899999999999999999999999999999999999999999999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.96 E-value=6.4e-29 Score=232.53 Aligned_cols=119 Identities=45% Similarity=0.720 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCC---ceecccccccChHHHHHHHhhcCCCC---CccccceEEEEEeCChHHHHHHHHHHHhhccCC
Q 004703 428 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKKKLTM---DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (735)
Q Consensus 428 ~v~~~L~~~L~~~gI---~~~~V~gR~Ks~ySI~~Km~rk~~~~---~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pi 501 (735)
.+...|++.|++.++ .. .|++|+|+++|+++|+.+++.+. ++|+|++|+||||++.+|||.++++|++.|++.
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~-~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~~d~~~v~~~l~~~f~~~ 80 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVA-SVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFVDDCYRVLDLLHSLFKVI 80 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCc-EEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCHHHHHHHHHHHHhCCccc
Confidence 356678888998888 55 59999999999999999998877 999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCccceeEEEEcCC---eeeEEEEEeehhhHHHHHH
Q 004703 502 PGKMKDYITRPKFNGYQSLHTVVTGEG---LVPLEVQIRTKEMHLQAEF 547 (735)
Q Consensus 502 p~r~kDYIa~PK~NGYqSLHt~V~~~~---g~~vEVQIRT~~Mh~wAE~ 547 (735)
|++++|||+.||.|||||+|++|..++ +.++||||||.+||+|||.
T Consensus 81 ~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 81 PGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999876 7999999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.96 E-value=2.4e-29 Score=230.22 Aligned_cols=108 Identities=40% Similarity=0.589 Sum_probs=95.2
Q ss_pred ccccChHHHHHHHhhcCC---CCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEE-
Q 004703 449 GRHKSLYSIHCKMLKKKL---TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV- 524 (735)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~---~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V- 524 (735)
+|+|+++|+++|+.|++. .+++|+|++|+||||.+.+|||.++++|++.|.+.+.+++|||+.||.|||||+|++|
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~GYrs~H~~v~ 80 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNGYRSLHYIVP 80 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHHHHHHHHHHHHHcCCcccccccccccccccCCcEeeEeeee
Confidence 699999999999999875 7899999999999999999999999999999999999999999999999999999999
Q ss_pred --EcCCeeeEEEEEeehhhHHHHHHHhhhhcccccC
Q 004703 525 --TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (735)
Q Consensus 525 --~~~~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~ 558 (735)
..+.+.++||||||.+||+|||.. |||.||..
T Consensus 81 ~~~~~~~~~~EiQIrT~~~~~waei~--h~~~YK~~ 114 (115)
T PF04607_consen 81 ENESFKGYPFEIQIRTLLQHAWAEIE--HDLRYKSS 114 (115)
T ss_dssp ETTECEEEEEEEEEEEHHHHHHHHHH--HHHHHHCT
T ss_pred ecccCCCceeeeeeccHHHHHHHHHH--HHHhCCCC
Confidence 345689999999999999999955 78999964
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=234.07 Aligned_cols=113 Identities=35% Similarity=0.455 Sum_probs=101.2
Q ss_pred eecccccccChHHHHHHHhhcCCCC------CccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCc
Q 004703 444 FLVLCGRHKSLYSIHCKMLKKKLTM------DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517 (735)
Q Consensus 444 ~~~V~gR~Ks~ySI~~Km~rk~~~~------~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGY 517 (735)
+++|++|+|++.||..|++|||.++ ++|+||+|+||+|.+.+|.|.+..+|.+.........||||.+||+|||
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F~~DI~~v~~~l~~~~d~~iv~~kDyi~n~k~~GY 131 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQFVDDIYRVVDLLKSRKDFTIVEEKDYIRNPKPNGY 131 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeehHhhHHHHHHHHhcccCccchhHHHHHhCCCCCCC
Confidence 4579999999999999999999543 6899999999999999999999999999877767789999999999999
Q ss_pred cceeEEEEcCC-------eeeEEEEEeehhhHHHHHHHhhhhcccccC
Q 004703 518 QSLHTVVTGEG-------LVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (735)
Q Consensus 518 qSLHt~V~~~~-------g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~ 558 (735)
||+|++|..|. +..+||||||..||.||+++|. .+||-+
T Consensus 132 RS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~--l~YKy~ 177 (231)
T COG2357 132 RSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHK--LRYKYG 177 (231)
T ss_pred ceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHH--hhcccc
Confidence 99999998663 4789999999999999999965 455544
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.35 E-value=2.9e-13 Score=112.33 Aligned_cols=59 Identities=31% Similarity=0.428 Sum_probs=50.9
Q ss_pred EEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 625 FVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 625 fVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
.|++|+| ++++||+|+|+.||||.||++++ +++++|+|||+.+ +++++|++||+|||+|
T Consensus 2 ~v~lpdG---~~~~~~~g~T~~d~A~~I~~~l~---------~~~~~A~Vng~~v-dl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 2 RVYLPDG---SIKELPEGSTVLDVAYSIHSSLA---------KRAVAAKVNGQLV-DLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEETTS---CEEEEETTBBHHHHHHHHSHHHH---------HCEEEEEETTEEE-ETTSBB-SSEEEEEEE
T ss_pred EEECCCC---CeeeCCCCCCHHHHHHHHCHHHH---------hheeEEEEcCEEC-CCCCCcCCCCEEEEEC
Confidence 4445555 69999999999999999998865 5789999999999 6999999999999997
No 11
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.85 E-value=1.5e-09 Score=94.57 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=47.1
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+.+.||+|+|+.||||+||++.++ .|..++++| |++.++ ++|+|++||+|||+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~------~f~~Ai~~k-~~~~vg-~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGD------GFLHAIDAR-TGRRVG-EDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHh------cceeeEEee-CCEEeC-CCcEecCCCEEEEeC
Confidence 588999999999999999998764 245577788 999995 999999999999986
No 12
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.74 E-value=6.3e-09 Score=90.48 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=45.4
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v----gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+.+.||+|||+.|||++||++++. .|..++ .++.||+.|+ ++++|++||+|||++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~------~f~~A~v~g~s~~~~gq~Vg-l~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVK------QFKYALVWGSSVKHSPQRVG-LDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHH------hCCeeEEeccCCcCCCeECC-CCCEecCCCEEEEeC
Confidence 689999999999999999987543 123333 5667999994 999999999999974
No 13
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.31 E-value=8e-07 Score=71.99 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=44.1
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+++|.|.|+.|++..++.+.. +..+.+++||+++ ++++.|+.||.|||++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~va~~vng~~v-dl~~~l~~~~~ve~v~ 60 (60)
T cd01668 9 EIIELPAGATVLDFAYAIHTEIG---------NRCVGAKVNGKLV-PLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHChHhh---------hheEEEEECCEEC-CCCCCCCCCCEEEEEC
Confidence 58999999999999988755422 3567889999999 5999999999999985
No 14
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.10 E-value=9.1e-06 Score=81.61 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=57.0
Q ss_pred hcCCccccCc--hhhHHHHHHHHHHHHhCCCHHHHHHHHhhcc---ccccC--------------CCHHHHHHHhCHHHH
Q 004703 244 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAF--------------LSYDYIFRTFGAGVA 304 (735)
Q Consensus 244 H~GQ~RksGe--PYI~Hpl~VA~ILa~lg~D~~tIaAALLHDv---VEDT~--------------vT~eeI~~~FG~eVA 304 (735)
+.|+...+|+ +++.|++++|.+....|.|++.|+||||||+ ++|.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 4444445665 6899999999988899999999999999998 77643 225778889999999
Q ss_pred HHHHHhhccc
Q 004703 305 DLVEGVSKLS 314 (735)
Q Consensus 305 ~LV~gVTKl~ 314 (735)
.+|..-..-+
T Consensus 93 ~lV~~Hv~aK 102 (179)
T TIGR03276 93 EPIRLHVQAK 102 (179)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 15
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.92 E-value=8.5e-06 Score=71.12 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.9
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+.+.||+|+|+.|||+.||++..+ + |.+++..+ ++.+ ..+|.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~----~--F~~A~v~~--~~~v-g~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEK----G--FIEAVGGR--RRLE-GKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHh----c--cEEEEEcc--CEEE-CCCEEecCCCEEEEEC
Confidence 689999999999999999998653 1 33333333 3677 5999999999999974
No 16
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.86 E-value=1.4e-05 Score=89.17 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=48.0
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 697 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita 697 (735)
+...||+|+|+.||||.||++.++ .|.++.++| +++.+ +++|+|++||+|+|+++
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~~------~fi~A~~~~-~~~~~-g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIGE------GFLYAIDAR-TKRRI-GEDYELKDGDVIKIVST 395 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHHh------hceehhccc-CCccc-CCCcEecCCCEEEEEeC
Confidence 689999999999999999999765 256677888 78888 59999999999999984
No 17
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.69 E-value=4.1e-05 Score=60.29 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=43.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+++|+|+|+.|++..++.... +..+.+++||+++ ++++.|.+||.||+++
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~---------~~~~~~~vn~~~~-~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLG---------KGFIGALVNGQLV-DLSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEC-CCCcCcCCCCEEEEeC
Confidence 58899999999999988765321 2457899999999 5999999999999985
No 18
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.35 E-value=0.00046 Score=57.85 Aligned_cols=58 Identities=29% Similarity=0.463 Sum_probs=45.1
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita~ 698 (735)
|..+| ..+++|+|.|+.|+....+-. ...+.+-+||++||. .++.|++||.|||++..
T Consensus 3 i~vNG---~~~~~~~~~tl~~lL~~l~~~-----------~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 3 IQLNG---EPRELPDGESVAALLAREGLA-----------GRRVAVEVNGEIVPRSQHASTALREGDVVEIVHAL 63 (66)
T ss_pred EEECC---eEEEcCCCCCHHHHHHhcCCC-----------CCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEe
Confidence 34555 588999999999999886433 235667799998831 58999999999999853
No 19
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.29 E-value=0.00036 Score=82.07 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=63.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH--------HH
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 706 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~l~--------~~ 706 (735)
.++++|+|+|+.|+|+.++.+.. +.+++|+|||+++ +|++++..++.||+++.....++. .+
T Consensus 10 ~~~~~~~gtt~~dia~~~~~~~~---------~~~v~a~vng~l~-dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll 79 (638)
T PRK00413 10 SVREFEAGVTVADVAASISPGLA---------KAAVAGKVNGELV-DLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLL 79 (638)
T ss_pred CEEEeCCCCCHHHHHHHhhhhch---------hheEEEEECCEEe-eCCccccCCCceeeeeccchhhHHHHhhhHHHHH
Confidence 58899999999999999977532 4689999999999 599999999999999966544442 46
Q ss_pred HHHHHHHH-HcccCcCCC
Q 004703 707 REEIQRMY-ERGLAVSNT 723 (735)
Q Consensus 707 r~~i~rm~-~~~~~~~~~ 723 (735)
..+++++| ...+.++++
T Consensus 80 ~~A~~~~~~~~~~~~~~~ 97 (638)
T PRK00413 80 AQAVKRLYPDAKLTIGPV 97 (638)
T ss_pred HHHHHHHcCCceEEECCc
Confidence 78888999 555666554
No 20
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.28 E-value=0.0005 Score=57.77 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=43.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~----~~Lk~GDvVEIita~ 698 (735)
..+++|++.|+.|+.-.++.. ...+.+.|||++|+ .+ +.|++||.|+|++..
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~-----------~~~i~V~vNg~~v~-~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 7 EPREVEEGATLAELLEELGLD-----------PRGVAVALNGEIVP-RSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEcC-HHHcCceecCCCCEEEEEEec
Confidence 589999999999999887533 23567889999996 66 899999999999854
No 21
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.26 E-value=0.00036 Score=55.28 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=43.7
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+.+|+|+|+.|++..+..... +..+++++||+++ +|++.|..|+.||+++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~v~~~vng~~~-dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 9 SVKEFPKGTTPLDIAKSISPGLA---------KKAVAAKVNGELV-DLSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEe-cCCcCcCCCCEEEEEe
Confidence 47889999999999998755321 3468899999998 6999999999999986
No 22
>PRK06437 hypothetical protein; Provisional
Probab=97.26 E-value=0.00069 Score=57.74 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=46.2
Q ss_pred EcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 629 IENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 629 ~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
.+|++=..+++|+|.|+.|++..++-. ...+.+-+||++|| .++.|+.||.|||++..
T Consensus 7 v~g~~~~~~~i~~~~tv~dLL~~Lgi~-----------~~~vaV~vNg~iv~-~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 7 VKGHINKTIEIDHELTVNDIIKDLGLD-----------EEEYVVIVNGSPVL-EDHNVKKEDDVLILEVF 64 (67)
T ss_pred ecCCcceEEEcCCCCcHHHHHHHcCCC-----------CccEEEEECCEECC-CceEcCCCCEEEEEecc
Confidence 334333578999999999999987543 13557779999996 99999999999999854
No 23
>PRK01777 hypothetical protein; Validated
Probab=97.16 E-value=0.0011 Score=60.46 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=40.2
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+++|+|+|+.|..-+.|-.... -+.-....-.-|||+.+ ++++.|++||.|||.+
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~----pei~~~~~~vgI~Gk~v-~~d~~L~dGDRVeIyr 75 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELR----TDIDLAKNKVGIYSRPA-KLTDVLRDGDRVEIYR 75 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccC----cccccccceEEEeCeEC-CCCCcCCCCCEEEEec
Confidence 367899999999999887532110 00000011345899999 5999999999999997
No 24
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.04 E-value=0.0013 Score=55.22 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=42.7
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita~ 698 (735)
..+++|+|.|+.|+.-.++-. ...+.+-+||++|+. .++.|++||.|||++..
T Consensus 6 ~~~~~~~~~tv~~ll~~l~~~-----------~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESLGLD-----------PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred eEEEcCCCCcHHHHHHHcCCC-----------CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 588999999999999887543 135677899999952 34799999999999854
No 25
>PRK07440 hypothetical protein; Provisional
Probab=97.01 E-value=0.0016 Score=56.06 Aligned_cols=59 Identities=14% Similarity=0.299 Sum_probs=46.8
Q ss_pred EEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 004703 626 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 626 Vi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita~ 698 (735)
-|..+| +.+++|+|.|+.||.-..+-. .+.+.+.+|+++||. .++.|++||.|||++..
T Consensus 6 ~i~vNG---~~~~~~~~~tl~~lL~~l~~~-----------~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 6 TLQVNG---ETRTCSSGTSLPDLLQQLGFN-----------PRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred EEEECC---EEEEcCCCCCHHHHHHHcCCC-----------CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEe
Confidence 344555 589999999999999876443 246788999999941 57999999999999854
No 26
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.97 E-value=0.0018 Score=54.00 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=41.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+.-+++.. ..+.+-+||++|+.. ++.|+.||.|||++..
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~------------~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGAR------------PPFAVAVNGDFVARTQHAARALAAGDRLDLVQPV 62 (65)
T ss_pred EEEECCCCCcHHHHHHhhCCC------------CCeEEEECCEEcCchhcccccCCCCCEEEEEeec
Confidence 588999999999998876432 235678999999532 6899999999999843
No 27
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.84 E-value=0.0029 Score=54.41 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=45.0
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita~ 698 (735)
...+++.+.|+.|+.-.++-. .+.+.+.+||.+||. .++.|++||.|||++..
T Consensus 10 ~~~e~~~~~tv~dLL~~l~~~-----------~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v 65 (68)
T COG2104 10 KEVEIAEGTTVADLLAQLGLN-----------PEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVV 65 (68)
T ss_pred EEEEcCCCCcHHHHHHHhCCC-----------CceEEEEECCEEccchhhhhccccCCCEEEEEEee
Confidence 689999999999999887554 246788999999943 79999999999999854
No 28
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.84 E-value=0.003 Score=53.35 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=45.6
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~---~l~~~Lk~GDvVEIita~ 698 (735)
|..+| ..+++|.+.|+.|+...++.. ...+.+-+|+++|| -.++.|+.||.|||++..
T Consensus 3 i~vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 3 ILFND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPREQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred EEECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChHHcCccccCCCCEEEEEEEc
Confidence 34455 589999999999999876443 24578889999995 136799999999999854
No 29
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.82 E-value=0.0023 Score=54.55 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=42.8
Q ss_pred eEEecCCC-CCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~G-STvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~----~~Lk~GDvVEIita~ 698 (735)
..+++|++ +|+.|+...++-. ...+.+-+|+++|| -+ +.|++||.|||++..
T Consensus 8 ~~~~~~~~~~tv~~lL~~l~~~-----------~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 8 NQIEVPESVKTVAELLTHLELD-----------NKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred EEEEcCCCcccHHHHHHHcCCC-----------CCeEEEEECCEEeC-HHHcCceecCCCCEEEEEEEe
Confidence 58899999 7999999877543 24577889999996 54 899999999999854
No 30
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.70 E-value=0.0038 Score=53.46 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=42.9
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
.+++|+|.|+.|+.-.++-. ...+.+.+||++|+ .++.|+.||.|||++..
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~-----------~~~v~v~vNg~iv~-~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFN-----------TESAIAKVNGKVAL-EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCC-----------CccEEEEECCEECC-CCcCcCCCCEEEEEccc
Confidence 67889999999999887433 24577889999995 89999999999999854
No 31
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.34 E-value=0.0069 Score=51.16 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=44.9
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC--CCCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD--PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~--l~~~Lk~GDvVEIita~ 698 (735)
|+.+| ..+++|++.|+.|+.-..+-. ...+.+-+|+.+||. .++.|++||.|||++..
T Consensus 3 i~vNG---~~~~~~~~~tl~~ll~~l~~~-----------~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~V 62 (65)
T PRK05863 3 VVVNE---EQVEVDEQTTVAALLDSLGFP-----------EKGIAVAVDWSVLPRSDWATKLRDGARLEVVTAV 62 (65)
T ss_pred EEECC---EEEEcCCCCcHHHHHHHcCCC-----------CCcEEEEECCcCcChhHhhhhcCCCCEEEEEeec
Confidence 34455 589999999999999887543 246788899998853 24679999999999854
No 32
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.18 E-value=0.011 Score=49.70 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.4
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l----~~~Lk~GDvVEIita~ 698 (735)
|..+| +.+++ .+.|+.||....+-. ...+.+-+|+++|| . ++.|++||.|||++..
T Consensus 3 i~~Ng---~~~~~-~~~tl~~Ll~~l~~~-----------~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 3 LFVNG---ETLQT-EATTLALLLAELDYE-----------GNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred EEECC---eEEEc-CcCcHHHHHHHcCCC-----------CCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 34455 47788 468999998876432 13567889999996 5 7899999999999854
No 33
>PRK14707 hypothetical protein; Provisional
Probab=96.12 E-value=0.023 Score=73.12 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred cccccccChHHHHHHHhh----cCCCC----CccccceEEEEEeCC---hHHHHHHHHHHHhh-ccCCCCcccccccCCC
Q 004703 446 VLCGRHKSLYSIHCKMLK----KKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPK 513 (735)
Q Consensus 446 ~V~gR~Ks~ySI~~Km~r----k~~~~----~eI~Dl~giRIIv~~---~~DCY~vlgiIh~~-~~pip~r~kDYIa~PK 513 (735)
-...|.|+..|+.+|+.. ++.++ ..|+|.+..=||++. ...+..+++.+... |+.+ +++++-.. +
T Consensus 2306 GLe~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~~Fva~~r~Il~aL~~qGy~~v--kvkN~F~~-~ 2382 (2710)
T PRK14707 2306 GTQHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQGFTAGLRAVLAALDDQGHARV--KLTNQFTE-Y 2382 (2710)
T ss_pred chHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeecccC-C
Confidence 378899999999999974 45555 569998888888874 56777777777654 5443 45665543 3
Q ss_pred CCCccceeEEEEcCCeeeEEEEEeehhhHHHHHHHhhhhcccccC
Q 004703 514 FNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (735)
Q Consensus 514 ~NGYqSLHt~V~~~~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~ 558 (735)
.++|+.+++++..++|..+|||.-|..--..-+. .|=.||+.
T Consensus 2383 ~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2383 SPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred CCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 5789999999999999999999999887776663 57788864
No 34
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=95.91 E-value=0.014 Score=52.15 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=45.4
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
|..+| ..++++.+.|+.||.-..+-. ...+.+-+||++||.- ++.|++||.|||++..
T Consensus 21 I~VNG---~~~~~~~~~tl~~LL~~l~~~-----------~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 21 ISIND---QSIQVDISSSLAQIIAQLSLP-----------ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred EEECC---eEEEcCCCCcHHHHHHHcCCC-----------CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEe
Confidence 45555 589999999999998876432 2456778999999632 6889999999999854
No 35
>PTZ00258 GTP-binding protein; Provisional
Probab=95.76 E-value=0.0098 Score=66.76 Aligned_cols=57 Identities=5% Similarity=0.012 Sum_probs=43.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccc--------------cccCC--eecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR--------------PRLNH--KAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vg--------------akVNg--r~V~~l~~~Lk~GDvVEIita~ 698 (735)
+...+|+|+|+.|+|..||+|..+ | |.++.- ||--| |.+ ..+|.|++||+|++.-..
T Consensus 316 raw~i~~Gsta~~aAg~IHsD~~k----g--Fi~Aev~~~~d~~~~g~~~~ak~~g~~r~e-GkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 316 RCWTIQKGTKAPQAAGVIHSDFEK----G--FICAEVMKYEDFLELGSEAAVKAEGKYRQE-GKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred eEEEeCCCCcHHHHHhhhhhHHhh----C--cEEEEECcHHHHHHcCCHHHHHhcCceeee-CCceEecCCCEEEEEecC
Confidence 789999999999999999999875 3 222222 33435 566 589999999999997643
No 36
>PLN02908 threonyl-tRNA synthetase
Probab=95.73 E-value=0.019 Score=68.72 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEEEEcCCcceEEecCC-CCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCcc
Q 004703 624 VFVIMIENDKMSVQEFPT-SSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS 702 (735)
Q Consensus 624 vfVi~~~g~~~~v~~LP~-GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~ 702 (735)
+-|.+|+| .+++.|+ |+|+.|+|..+..... ...+.|+|||++. +|+++|..+..||+++.....+
T Consensus 52 i~i~~~dg---~~~~~~~~~tt~~~ia~~i~~~~~---------~~~v~a~Vng~l~-dL~~~l~~d~~le~l~~~~~eg 118 (686)
T PLN02908 52 IKVTLPDG---AVKDGKKWVTTPMDIAKEISKGLA---------NSALIAQVDGVLW-DMTRPLEGDCKLKLFKFDDDEG 118 (686)
T ss_pred eEEEeCCC---ceEeecCCCCCHHHHHHHhCccch---------hhcEEEEECCEEe-ecCccccCCCeeEEeccccHHH
Confidence 44555554 4788884 5999999999866532 4678999999998 6999999999999999665444
Q ss_pred ----HH----HHHHHHHHHHHcccCcCCCC
Q 004703 703 ----LT----EYREEIQRMYERGLAVSNTG 724 (735)
Q Consensus 703 ----l~----~~r~~i~rm~~~~~~~~~~~ 724 (735)
|- .+..++.++|...++++|+.
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i 148 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEYGCKLCIGPCT 148 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCcc
Confidence 31 57889999997778888774
No 37
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=95.69 E-value=0.021 Score=67.78 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=62.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH--------HH
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 706 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~l~--------~~ 706 (735)
..+++|+|.|+.|+|..+..+.. ...++|+|||+++ +|++++..+..||+++.....++. .+
T Consensus 14 ~~~~~~~g~t~~~ia~~~~~~~~---------~~iv~a~vn~~l~-dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL 83 (639)
T PRK12444 14 SVKEFVKGITLEEIAGSISSSLK---------KKAVAGKVNDKLY-DLRRNLEEDAEVEIITIDSNEGVEIARHSAAHIL 83 (639)
T ss_pred CEEEecCCCCHHHHHHHhhhhcc---------hheEEEEECCEEE-EcCcccCCCCeEEEecCCChHHHHHHHHHHHHHH
Confidence 47889999999999998855421 3578999999999 699999999999999976655553 46
Q ss_pred HHHHHHHH-HcccCcCCC
Q 004703 707 REEIQRMY-ERGLAVSNT 723 (735)
Q Consensus 707 r~~i~rm~-~~~~~~~~~ 723 (735)
..+++++| +..+.++++
T Consensus 84 ~~A~~~~~~~~~~~i~~~ 101 (639)
T PRK12444 84 AQAVKRLYGDVNLGVGPV 101 (639)
T ss_pred HHHHHHHcCCcEEEeCCc
Confidence 78888888 444555555
No 38
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=95.35 E-value=0.021 Score=50.73 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=41.7
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccc-cccCCeecCCCCCcCCCCCEEEEeeC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR-PRLNHKAVGDPRCKLKMGDVVELTPA 697 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vg-akVNgr~V~~l~~~Lk~GDvVEIita 697 (735)
...++.++|+.|+..++|-- +.+|+ ..|||+.| ++++.|+.||.|.|.+.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP-----------~tEV~~i~vNG~~v-~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVP-----------HTEVGLILVNGRPV-DFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCC-----------hHHeEEEEECCEEC-CCcccCCCCCEEEEEec
Confidence 56899999999999998544 33444 57999999 59999999999999984
No 39
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.11 E-value=0.015 Score=64.65 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=44.1
Q ss_pred ceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--------------ccccCCeec-CCCCCcCCCCCEEEEee
Q 004703 634 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNHKAV-GDPRCKLKMGDVVELTP 696 (735)
Q Consensus 634 ~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--------------gakVNgr~V-~~l~~~Lk~GDvVEIit 696 (735)
.+...+|+|+|+.|+|..||+|..+ | |-++. .||=.|++- -.-+|.+++||+|.|-.
T Consensus 291 vrawti~~GstA~~aAg~IHsD~~k----g--FI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~f 362 (364)
T PRK09601 291 VRAWTIKKGTTAPQAAGVIHTDFEK----G--FIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRF 362 (364)
T ss_pred EEEEEeCCCCchHHHhhcchhhHhh----c--cEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEc
Confidence 4789999999999999999999875 3 45555 566445431 13589999999999853
No 40
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.08 E-value=0.027 Score=48.36 Aligned_cols=60 Identities=27% Similarity=0.272 Sum_probs=44.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|+|+|+.|+.-.+....+.. .......+.+-|||+.|+ .+++|++||.|+|++..
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~---~~~~~~~~~v~vNg~~v~-~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGL---LEELLARVRIAVNGEYVR-LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchH---HHhhhhcEEEEECCeEcC-CCcccCCCCEEEEeCCC
Confidence 3568999999999998875432110 001234567889999995 99999999999999854
No 41
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.00 E-value=0.014 Score=63.84 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=45.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v----gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+.+-|.+||||.|++-+||.+.-+ .|+++. .+|-.|+.| .++|.|.++|+|||+-
T Consensus 306 ~PlIlr~GsTV~Dvc~~IH~~l~~------~FryA~VWGkSvk~~~QrV-G~dHvLeD~DIV~I~~ 364 (365)
T COG1163 306 EPLILRRGSTVGDVCRKIHRDLVE------NFRYARVWGKSVKHPGQRV-GLDHVLEDEDIVEIHA 364 (365)
T ss_pred CCeEEeCCCcHHHHHHHHHHHHHH------hcceEEEeccCCCCCcccc-CcCcCccCCCeEEEee
Confidence 577899999999999999987643 244444 588899999 6999999999999973
No 42
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.89 E-value=0.025 Score=49.38 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=43.4
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+...+......... ....+..-||++.+ +.++.|+.||.|+|+|..
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~~----~~~~~~vavN~~~v-~~~~~l~dgDeVai~Ppv 79 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLEE----VRSCCVLALNEEYT-TESAALKDGDELAIIPPI 79 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHHH----HhhCcEEEECCEEc-CCCcCcCCCCEEEEeCCC
Confidence 578899999999998887543211110 11234467999999 499999999999999854
No 43
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=94.66 E-value=0.026 Score=50.61 Aligned_cols=52 Identities=25% Similarity=0.196 Sum_probs=27.7
Q ss_pred eEEecCCCCCHhHhHHhh-----cCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERA-----GRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i-----~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
-.++||+|+|+.|...+- .+++.- .....=|=||.++ +++.|+.||.|||.-
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl---------~~~~vGIfGk~~~-~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILEQFPEIDL---------EKNKVGIFGKLVK-LDTVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHHH-TT--T---------TTSEEEEEE-S---TT-B--TT-EEEEE-
T ss_pred EEEECCCcCcHHHHHHHcCchhhCcccCc---------ccceeeeeeeEcC-CCCcCCCCCEEEEec
Confidence 367899999999987652 222210 1111224578885 999999999999984
No 44
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.32 E-value=0.076 Score=58.26 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=42.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPA 697 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita 697 (735)
+.+++++|.|+.|+.-..+-. .+.+.+-|||++||. .++.|++||.|||++.
T Consensus 8 k~~el~e~~TL~dLL~~L~i~-----------~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 8 EPRQVPAGLTIAALLAELGLA-----------PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred EEEecCCCCcHHHHHHHcCCC-----------CCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 589999999999999886443 245777899999941 4679999999999983
No 45
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=94.24 E-value=0.038 Score=47.00 Aligned_cols=58 Identities=31% Similarity=0.406 Sum_probs=44.9
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
..+.+|.++|+.|+.-++........ ....+.+-|||++++ . ++.|++||.|.|+|..
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~-~~~~~~~l~~gD~V~i~ppv 74 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVP-DDGLDTPLKDGDEVAILPPV 74 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEG-GGTTTSBEETTEEEEEEEST
T ss_pred eEEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcC-CccCCcCcCCCCEEEEECCC
Confidence 57889999999999988854432110 124567789999996 6 9999999999999854
No 46
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=93.83 E-value=0.07 Score=46.79 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.8
Q ss_pred CchhhHHHHHHHHHHHHhC------CCHHHHHHHHhhcccccc
Q 004703 252 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDA 288 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa~lg------~D~~tIaAALLHDvVEDT 288 (735)
+++.+.|.+.|+.+...+. .......||||||+-+..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5678899999998776553 345688999999997754
No 47
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=93.00 E-value=0.11 Score=46.15 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhCC------CH-HHHHHHHhhcccccc
Q 004703 256 LLHCVETAMLLAAIGA------NS-TVVAAGLLHDTLDDA 288 (735)
Q Consensus 256 I~Hpl~VA~ILa~lg~------D~-~tIaAALLHDvVEDT 288 (735)
+.|.+.|+.+...+.. +. ..++||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999987765532 22 267999999997654
No 48
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.30 E-value=0.23 Score=43.22 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=42.6
Q ss_pred eEEecCCC-CCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~G-STvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.+ +|+.|+...+........ .....+..-||++.+. .+++|+.||.|.|+|-.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~----~~~~~~~v~vn~~~v~-~~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELA----ASRGQVMVAVNEEYVT-DDALLNEGDEVAFIPPV 77 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhh----hhccceEEEECCEEcC-CCcCcCCCCEEEEeCCC
Confidence 36788977 999999988744322100 0113455779999995 89999999999999843
No 49
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=0.51 Score=43.28 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=39.9
Q ss_pred EEecCCCCCHhHhHHhhc-----CCCCCCCCCCCCCccccccc--cCCeecCCCCCcCCCCCEEEEee---CCCCccHHH
Q 004703 636 VQEFPTSSTVMDLLERAG-----RGSSRWSPYGFPLKEELRPR--LNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE 705 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~-----~~~~~~~~~g~~~~~~vgak--VNgr~V~~l~~~Lk~GDvVEIit---a~p~~~l~~ 705 (735)
-+.|++|+||.|..-+-| ++++ ++ .+| |=++++. ++.+|+.||.|||.- +.|. .|..
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~~id--------l~---~n~~GI~~k~~k-l~~~l~dgDRVEIyRPLlaDPK-E~RR 86 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFPDID--------LH---ENKVGIYSKPVK-LDDELHDGDRVEIYRPLLADPK-EARR 86 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccccCC--------cc---ccceeEEccccC-ccccccCCCEEEEecccccChH-HHHH
Confidence 567999999999987632 2221 11 123 3367785 899999999999994 4443 5654
Q ss_pred HHHH
Q 004703 706 YREE 709 (735)
Q Consensus 706 ~r~~ 709 (735)
-|.+
T Consensus 87 ~Ra~ 90 (99)
T COG2914 87 KRAE 90 (99)
T ss_pred HHHH
Confidence 4333
No 50
>PRK09169 hypothetical protein; Validated
Probab=91.44 E-value=0.67 Score=61.25 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCceecccccccChHHHHHHHh----hcCCCC----CccccceEEEEEeCC---hHHHHHHHHHHHhh-cc
Q 004703 432 KLEQALKDKNISFLVLCGRHKSLYSIHCKML----KKKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WA 499 (735)
Q Consensus 432 ~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~----rk~~~~----~eI~Dl~giRIIv~~---~~DCY~vlgiIh~~-~~ 499 (735)
.|+..+...+........|+|+..|+.+|+. ++++++ ..|+|.+-.=|+++. ...+..+++.+... |.
T Consensus 1901 ~L~s~a~~~g~~L~Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~ 1980 (2316)
T PRK09169 1901 MLRAAIEGIGGQLRGLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQTFVAGYRRILGALDEQGHT 1980 (2316)
T ss_pred HHHHHHHHhcCCccchHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCccHHHHHHHHHHHHHhCCCe
Confidence 3333333333322347889999999999998 456664 568997777677764 56777777777664 54
Q ss_pred CCCCcccccccCCCCCCccceeEEE-EcCCeeeEEEEEeehhhHHHHHHHhhhhcccccC
Q 004703 500 EVPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (735)
Q Consensus 500 pip~r~kDYIa~PK~NGYqSLHt~V-~~~~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~ 558 (735)
.+ +++++-.. ..+.|+.+|+++ ..++|..+|||.-|..--..-+. .|-.||+.
T Consensus 1981 ~V--kv~N~F~~-~~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1981 RT--RVTNHFKK-RGPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred EE--EEEeeecc-CCCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 43 34443222 248999999999 67789999999999887666653 57789863
No 51
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=90.87 E-value=1.6 Score=45.89 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=67.6
Q ss_pred CcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHH---HH-----hCCCHH-HHHHHHhhccccc-cCCCHHHH
Q 004703 226 KIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLL---AA-----IGANST-VVAAGLLHDTLDD-AFLSYDYI 295 (735)
Q Consensus 226 ~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~IL---a~-----lg~D~~-tIaAALLHDvVED-T~vT~eeI 295 (735)
+..|..++++|.+++.+.+. ..-+.|.++|.... +. ++.|.+ ..+||||||+... .......+
T Consensus 34 ~iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~ 106 (228)
T TIGR03401 34 PLPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKM 106 (228)
T ss_pred CCCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccC
Confidence 34477888899999877643 24478999986433 22 367765 4488999998752 22111111
Q ss_pred H-HHhCHHHH-HHHHHhhcccccchhhhhccccchHHHHHHHHHHHhh-----c---cCceeehhhhhhhhhhcc-cccC
Q 004703 296 F-RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLA-----M---ADARAVLIKLADRLHNMM-TLDA 364 (735)
Q Consensus 296 ~-~~FG~eVA-~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLA-----m---aD~RVvLIKLADRLhNMR-tL~~ 364 (735)
. +..|...| +++...+ +.+. .+.+.+...+.. . .++.+.||..||++++|- ....
T Consensus 107 ~fe~~ga~~A~~~L~~~~---G~~~-----------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~ 172 (228)
T TIGR03401 107 SFEFYGGILALDVLKEQT---GANQ-----------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDL 172 (228)
T ss_pred CHHHHHHHHHHHHHHHCC---CCCH-----------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhh
Confidence 1 12333322 3333321 1111 111222111111 0 145688999999999986 3455
Q ss_pred CCHHHHH
Q 004703 365 LPLCKRQ 371 (735)
Q Consensus 365 lp~ekq~ 371 (735)
++++.+.
T Consensus 173 ~~~~~~~ 179 (228)
T TIGR03401 173 VHPDTVD 179 (228)
T ss_pred CCHHHHH
Confidence 6766653
No 52
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.09 E-value=2.3 Score=47.27 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccccccCC-------CHHHHHH-H
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDDAFL-------SYDYIFR-T 298 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----~lg~D~~t-IaAALLHDvVEDT~v-------T~eeI~~-~ 298 (735)
..++|+++-.+.+. .+..+.|.++|+.+.. .++.|.+. ++||||||+-..... ..+-|++ .
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 45556666444322 2335789999987543 45667654 567999999653221 2233332 2
Q ss_pred hCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHH
Q 004703 299 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL 378 (735)
Q Consensus 299 FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl 378 (735)
|.++++++|+.-..- .++.. ..+...+..-...-....+.+|-.||+|...... ++.+.+.+-.++.
T Consensus 245 ~~e~i~~iIe~H~g~-G~~~~---------~~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r~--v~~e~~~~k~~~~- 311 (339)
T PRK12703 245 IDDRVVSIVERHIGA-GITSE---------EAQKLGLPVKDYVPETIEEMIVAHADNLFAGDKR--LNLKQVMDKYRKK- 311 (339)
T ss_pred CCHHHHHHHHHHhcc-CCCcc---------hhhccCCccccCCCCCHHHHHHHHHHHHhcCCCc--CCHHHHHHHHHhh-
Confidence 456788888654421 11100 0000000000000013456799999999776532 4444433322221
Q ss_pred HHHHhhhhhcCcchHHHHHHhhh
Q 004703 379 EIFVPLANRLGISTWKVQLENLC 401 (735)
Q Consensus 379 ~IYAPLA~RLGi~~iK~ELEDLa 401 (735)
-++..++| +..|..|||.++
T Consensus 312 -~~~~~~~R--~~~l~~~~~~~~ 331 (339)
T PRK12703 312 -GLHDAAER--IKKLHEELSSIC 331 (339)
T ss_pred -hhhHHHHH--HHHHHHHHHHHh
Confidence 12333444 445555555544
No 53
>PRK14707 hypothetical protein; Provisional
Probab=88.87 E-value=1.3 Score=58.21 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=74.7
Q ss_pred cChHHHHHHHhh---cCCC----CCccccceEEEEEeCC---hHHHHHHHHHHHhh-ccCCCCcccccccCCCCCCccce
Q 004703 452 KSLYSIHCKMLK---KKLT----MDEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYQSL 520 (735)
Q Consensus 452 Ks~ySI~~Km~r---k~~~----~~eI~Dl~giRIIv~~---~~DCY~vlgiIh~~-~~pip~r~kDYIa~PK~NGYqSL 520 (735)
|+..||.+|+.+ .|++ +..|.|.+..-||.+. ....+.+.+.+... |+.+ ++|++-..| .+.|..+
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~Gv 2620 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPSEGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGI 2620 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCcchHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccce
Confidence 999999999986 3444 3669998877788774 56666677666654 6654 678777554 4679999
Q ss_pred eEEEEcCCeeeEEEEEeehhhHHHHHHHhhhhccccc
Q 004703 521 HTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 557 (735)
Q Consensus 521 Ht~V~~~~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~ 557 (735)
-+++..++|..||||.-|..--..-+ + .|-.|+.
T Consensus 2621 N~~~r~~~g~~FEIQFHT~~Sf~~K~-~--tH~lYek 2654 (2710)
T PRK14707 2621 NASFTDAEGYAFEVQFHTAESFNAKA-Q--THLSYKR 2654 (2710)
T ss_pred eeeEEcCCCCeEEEEeccHHHHHHHH-H--hHHHHHh
Confidence 99999988889999999976554444 4 5777865
No 54
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=86.46 E-value=1 Score=39.67 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=40.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCC--C--CCCCccccccccCCeecCCCCC--cCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSP--Y--GFPLKEELRPRLNHKAVGDPRC--KLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~--~--g~~~~~~vgakVNgr~V~~l~~--~Lk~GDvVEIita~ 698 (735)
..+++| |+|+.|+...+......... + +......+..-|||+.+. .+. +|++||.|.|+|..
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLGTELKDGDVVAIFPPV 85 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCCCCCCCCCEEEEeCCC
Confidence 356778 99999999887433221000 0 001122356779999995 555 99999999999854
No 55
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=85.71 E-value=1.2 Score=38.99 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=39.1
Q ss_pred EEecC-CCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFP-TSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP-~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
.++++ .|+|+.|+.-.+......+.. ......+..-||++.+ +.++.|++||.|-|+|-.
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~--~~~~~~~~~aVN~~~~-~~~~~l~dgDeVai~PPV 78 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWAL--ALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFPPV 78 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHh--hhcCCCEEEEECCEEc-CCCCCCCCCCEEEEeCCC
Confidence 34454 589999998777433221100 0001223466899998 489999999999999843
No 56
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=75.73 E-value=4.2 Score=42.54 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=30.0
Q ss_pred cCchhhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccccccC
Q 004703 251 SGDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDDAF 289 (735)
Q Consensus 251 sGePYI~Hpl~VA~ILa----~lg~D~~t-IaAALLHDvVEDT~ 289 (735)
+|..-+.|.++||.+.. +.|.|.++ ..||||||+.....
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 77778999999987543 55888764 47889999987543
No 57
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=74.54 E-value=3.1 Score=41.90 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=29.3
Q ss_pred ccCchh--hHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Q 004703 250 ASGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 284 (735)
Q Consensus 250 ksGePY--I~Hpl~VA~ILa~lg~D~~tIaAALLHDv 284 (735)
-+|+|. ..|.++.|.+...-|.+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 367775 57999988766677999999999999986
No 58
>PRK10119 putative hydrolase; Provisional
Probab=73.21 E-value=13 Score=39.30 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHH---HH-HhCCCHH-HHHHHHhhcccc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAML---LA-AIGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~I---La-~lg~D~~-tIaAALLHDvVE 286 (735)
.+.++.+|..+...+. .+|.- +.|..+|... ++ .-+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3445555655544432 22222 5677666543 33 2356654 568999999975
No 59
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=72.12 E-value=7.1 Score=35.60 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=39.8
Q ss_pred EecC--CCCCHhHhHHhhcCCCCCCCC--C--CCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 004703 637 QEFP--TSSTVMDLLERAGRGSSRWSP--Y--GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 637 ~~LP--~GSTvlDfAy~i~~~~~~~~~--~--g~~~~~~vgakVNgr~V~---~l~~~Lk~GDvVEIita~ 698 (735)
.++| .|+|+.|+.-.+-........ + +..+...+-.-||++.+. .++++|+.||.|.|+|..
T Consensus 21 ~~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 21 VVLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred EeccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 4456 589999998766332211000 0 011234566789999862 368999999999999854
No 60
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=71.34 E-value=3.6 Score=33.84 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEE
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVEL 694 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEI 694 (735)
.++|||+.+...++.|+.||+|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 478999998446999999999986
No 61
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=70.58 E-value=3.4 Score=36.62 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHhCC--------CHHHHHHHHhhcccccc
Q 004703 254 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 288 (735)
Q Consensus 254 PYI~Hpl~VA~ILa~lg~--------D~~tIaAALLHDvVEDT 288 (735)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999887765422 35678999999998864
No 62
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=69.76 E-value=2.7 Score=32.82 Aligned_cols=22 Identities=45% Similarity=0.686 Sum_probs=20.1
Q ss_pred ccccCCeecCCCCCcCCCCCEE
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVV 692 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvV 692 (735)
+++|||+.+.++++.++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5799999997799999999987
No 63
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=65.52 E-value=4.7 Score=35.82 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 640 PTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 640 P~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..|.|+-++--.......++...... ..++.+.+|...+ +++++|+.||+|-|+|..
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~t~L~dGDeVa~~PPV 81 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALED-NIVVNAANNEFLV-GLDTPLKDGDEVAFFPPV 81 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCc-cceEEeeeceeec-cccccCCCCCEEEEeCCC
Confidence 33667766655442221111110000 2457788899998 599999999999999843
No 64
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=63.91 E-value=2.8 Score=47.03 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEE
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVE 693 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVE 693 (735)
|....+.|||++||++.||.+ + +..++.|+ +-|.+ .-+|.+++||+|.
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~-~--------~~~Akeag-~~r~~-GkdY~vqdGDVi~ 367 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYG-G--------EAAAKEAG-KRRLE-GKDYIVQDGDVIH 367 (372)
T ss_pred chhhccccceEeeHHHHHhcC-c--------HHHHHHhc-ceeec-cccceecCCCEEE
Confidence 467789999999999999987 2 23344443 22335 5799999999993
No 65
>PRK14137 recX recombination regulator RecX; Provisional
Probab=60.01 E-value=9.8 Score=39.23 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=63.9
Q ss_pred HHHHHHhhhhhccCcchh--hHHHHHHHhh-hhhhhHHHHHHHHHH--HHHhcCCceecccccccChHHHHHHHhhcCCC
Q 004703 393 WKVQLENLCFKHLNPDQH--TELSSKLVEC-FDEAMVTSAIEKLEQ--ALKDKNISFLVLCGRHKSLYSIHCKMLKKKLT 467 (735)
Q Consensus 393 iK~ELEDLaFryL~P~~Y--~~i~~~L~~~-~re~~i~~v~~~L~~--~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~~ 467 (735)
....+.+.|++||--..| .+|.++|.+. ..++.|+.+++.|++ .|++...--.....+-+.+.-|.++|.+||++
T Consensus 38 ~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~~~~k~~Gp~rI~~eL~qKGI~ 117 (195)
T PRK14137 38 AREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAENSRRGVGALRVRQTLRRRGVE 117 (195)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCchHHHHHHHHHHcCCC
Confidence 344555666677665554 5677777765 356667777776655 12221100001223456788899999999998
Q ss_pred CCccccceEEEEEeCChHHHHHHHHHHHhhccC
Q 004703 468 MDEIHDIYGLRLIVENEEDCYQALRVVHQLWAE 500 (735)
Q Consensus 468 ~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~p 500 (735)
-+-|.+.+.- ++..++...+..++.+.|..
T Consensus 118 ~~lI~~al~~---~d~ede~e~a~~l~~KK~~~ 147 (195)
T PRK14137 118 ETLIEETLAA---RDPQEEQQEARNLLERRWSS 147 (195)
T ss_pred HHHHHHHHHh---cCchhHHHHHHHHHHHhccc
Confidence 7666665541 13345677788888888764
No 66
>PRK14136 recX recombination regulator RecX; Provisional
Probab=58.60 E-value=8.4 Score=42.37 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=53.4
Q ss_pred hhhccCcchh--hHHHHHHHhhh-hhhhHHHHHHHHHH--HHHhcCCceeccccc--ccChHHHHHHHhhcCCCCCcccc
Q 004703 401 CFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQ--ALKDKNISFLVLCGR--HKSLYSIHCKMLKKKLTMDEIHD 473 (735)
Q Consensus 401 aFryL~P~~Y--~~i~~~L~~~~-re~~i~~v~~~L~~--~L~~~gI~~~~V~gR--~Ks~ySI~~Km~rk~~~~~eI~D 473 (735)
++.||--..| .+|.++|.+.. .++.|+.+++.|++ .|++...--..|..| .|.+.-|..+|++||++-+-|.+
T Consensus 168 AL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIEq 247 (309)
T PRK14136 168 ALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVES 247 (309)
T ss_pred HHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHHH
Confidence 4444444443 45666666542 34455555555544 122111000012222 25677899999999998666666
Q ss_pred ceEEEEEeCChHHHHHHHHHHHhhccCC
Q 004703 474 IYGLRLIVENEEDCYQALRVVHQLWAEV 501 (735)
Q Consensus 474 l~giRIIv~~~~DCY~vlgiIh~~~~pi 501 (735)
.+. .+ .+++...+..++.+.|+..
T Consensus 248 ALe--ei--eEDE~E~A~~L~eKK~~~~ 271 (309)
T PRK14136 248 VGA--QL--RETEFERAQAVWRKKFGAL 271 (309)
T ss_pred HHH--hc--cHhHHHHHHHHHHHHhccc
Confidence 554 11 3456677778888777643
No 67
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=57.95 E-value=16 Score=30.20 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 004703 253 DPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 286 (735)
.+-..|.+.|+.... .+++|.+ ...||||||+-.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 344678888876554 3466664 667999999744
No 68
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=57.89 E-value=14 Score=32.62 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=36.8
Q ss_pred EEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCC----C---CCcccc--ccccCCee-cCCCCCcCCCCCEEE
Q 004703 626 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYG----F---PLKEEL--RPRLNHKA-VGDPRCKLKMGDVVE 693 (735)
Q Consensus 626 Vi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g----~---~~~~~v--gakVNgr~-V~~l~~~Lk~GDvVE 693 (735)
-|..+| ..++.++|.|+++++.+.|..+... +|. . +...|- -+.|||+. |+.=.++++.|.+|+
T Consensus 5 ~i~idG---~~v~~~~G~til~al~~~gi~ip~~-c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 5 TITIDG---KPVEVPPGETILEALLAAGIDIPRL-CYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp EEEETT---EEEEEEET-BHHHHHHHTT--B-EE-TTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE
T ss_pred EEEECC---EEEEEcCCCHHHHHHHHCCCeEEEe-eeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEE
Confidence 355666 5889999999999999876554321 110 0 001111 26789988 654578999998886
No 69
>PRK03826 5'-nucleotidase; Provisional
Probab=56.16 E-value=21 Score=36.76 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHH---HH-----h--CCCH-HHHHHHHhhccccc
Q 004703 253 DPYLLHCVETAMLL---AA-----I--GANS-TVVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~IL---a~-----l--g~D~-~tIaAALLHDvVED 287 (735)
+.-..|-+.||.+. +. . +.|. .++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45678999998653 32 1 2453 46778999999994
No 70
>smart00363 S4 S4 RNA-binding domain.
Probab=54.60 E-value=10 Score=29.21 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=21.4
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+|||+.+...++.|+.||+|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 46899999844799999999998754
No 71
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=53.54 E-value=58 Score=35.88 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=47.7
Q ss_pred EEEEEcCCcceEEec-CCCCCHhHhHHhhcCCCCCCCCCCCC---Ccccc--ccccCCe--ecCCCCCcCCCCCEEEEee
Q 004703 625 FVIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRWSPYGFP---LKEEL--RPRLNHK--AVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 625 fVi~~~g~~~~v~~L-P~GSTvlDfAy~i~~~~~~~~~~g~~---~~~~v--gakVNgr--~V~~l~~~Lk~GDvVEIit 696 (735)
..|+++| ..+++ |+|.|++|.|.+.|-.+... +|-.. ...|- -+.|+|+ +|+.=.++++.|-+|+ |
T Consensus 69 ~~I~IDG---k~VeV~~~G~TILeAAr~~GI~IPtL-Cy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~--T 142 (297)
T PTZ00305 69 AIMFVNK---RPVEIIPQEENLLEVLEREGIRVPKF-CYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII--T 142 (297)
T ss_pred eEEEECC---EEEEecCCCChHHHHHHHcCCCcCcc-ccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE--e
Confidence 3566676 57888 99999999999876665432 11100 00111 1456664 5554478888888877 3
Q ss_pred CCCCccHHHHHHHHHHHH
Q 004703 697 AIPDKSLTEYREEIQRMY 714 (735)
Q Consensus 697 a~p~~~l~~~r~~i~rm~ 714 (735)
. ++.+.++|+.+-+|+
T Consensus 143 ~--Se~v~~~Rk~vLElL 158 (297)
T PTZ00305 143 D--SRLVRDAREGNVELI 158 (297)
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 2 233444444444443
No 72
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=53.40 E-value=62 Score=32.90 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tI-aAALLHDv 284 (735)
-|.+++++....-...--.-.+|-|.|.++.|+....-.-|.+-+ .+||+||.
T Consensus 74 ~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 74 TIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred eHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 467777776655443322346899999999999888665565544 68899986
No 73
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=51.62 E-value=14 Score=38.73 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred chhhHHHHHHHHHHHHh-------C--CCH-HHHHHHHhhccccccCCCHHHHH---HHhCHHHHHHHHHhhcccccchh
Q 004703 253 DPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDDAFLSYDYIF---RTFGAGVADLVEGVSKLSQLSKL 319 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa~l-------g--~D~-~tIaAALLHDvVEDT~vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~~ 319 (735)
+.--.|.+.||.+..-+ | .|. .....||+||..|--- -||. +.+-++...++..|.+.-.-..+
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft---GDI~TPVKy~tPelr~~~~~VE~~m~~~~i 104 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT---GDIKTPVKYATPELREMLAQVEEEMTENFI 104 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS-------S-SSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc---CCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 44557888887655322 3 344 3457899999999521 1111 12334444444444332110000
Q ss_pred hhhccccchHHHHHHHHHHHhhccC--ceeehhhhhhhhhhcc
Q 004703 320 ARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNMM 360 (735)
Q Consensus 320 ~r~~~~~~k~~qaE~lRkmLLAmaD--~RVvLIKLADRLhNMR 360 (735)
. +.. .....+.+|.++.--.| ....+||.||.++-+-
T Consensus 105 ~--~~i--P~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 105 K--KEI--PEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp H--HHS---GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred H--hhC--CHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 0 000 01123456666554433 7889999999998774
No 74
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=51.61 E-value=32 Score=35.41 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=52.1
Q ss_pred ccCchhhHHHHHHHHHH---H----HhC--CC-HHHHHHHHhhccccc--cCCC--HHHHHHHhCHHHHHHHHHhhcccc
Q 004703 250 ASGDPYLLHCVETAMLL---A----AIG--AN-STVVAAGLLHDTLDD--AFLS--YDYIFRTFGAGVADLVEGVSKLSQ 315 (735)
Q Consensus 250 ksGePYI~Hpl~VA~IL---a----~lg--~D-~~tIaAALLHDvVED--T~vT--~eeI~~~FG~eVA~LV~gVTKl~~ 315 (735)
..++.-..|-+.||.+- + ..| .+ ...+..||+||..|- ++++ ............-+..+.+.+..-
T Consensus 29 ~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~ 108 (193)
T COG1896 29 WNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLF 108 (193)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHccc
Confidence 35677788887776533 2 223 24 447888999999995 3333 122222233333333333322211
Q ss_pred cchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhc
Q 004703 316 LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359 (735)
Q Consensus 316 l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNM 359 (735)
+. ...-.+-++.. +...+..+.+||.||+|..+
T Consensus 109 -~~---------p~e~~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 -GL---------PEELLELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred -CC---------cHHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 00 00011223322 22247889999999999988
No 75
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=48.57 E-value=10 Score=43.47 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHh----CC--CH--------HHHHHHHhhccc
Q 004703 256 LLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDTL 285 (735)
Q Consensus 256 I~Hpl~VA~ILa~l----g~--D~--------~tIaAALLHDvV 285 (735)
+.|.+.|..+...+ +. +. .+.+||||||+=
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 89999998766533 21 11 488999999973
No 76
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=46.98 E-value=12 Score=33.78 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=33.4
Q ss_pred ceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCC------------ccccccccCCe--ecCCCCCcCCCCCEEEEe
Q 004703 634 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPL------------KEELRPRLNHK--AVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 634 ~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~------------~~~vgakVNgr--~V~~l~~~Lk~GDvVEIi 695 (735)
.+.-.+++|+|+.+.|-.||+|..+ |+.- .....+|-.|+ .. .-+|.+++||+|++.
T Consensus 12 vRaWti~~G~~Ap~aAG~IHsDfek----gFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~e-GK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 12 VRAWTIRKGTTAPQAAGVIHSDFEK----GFIRAEVISYDDFVEYGSEAAAKEAGKLRLE-GKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEEEETT-BHHHHHHCC-THHHH----HEEEEEEEEHHHHHHHTSHHHHHHTT-SEEE-ETT-B--TTEEEEEE
T ss_pred EEEEEccCCCCHHHhHhHHHHHHHh----hceEEEEEcHHHHHHcCCHHHHHHcCCcccc-CCceeEeCCCEEEEE
Confidence 4677899999999999999998653 2100 01112444454 22 358999999999874
No 77
>PRK12704 phosphodiesterase; Provisional
Probab=46.95 E-value=52 Score=38.87 Aligned_cols=37 Identities=38% Similarity=0.499 Sum_probs=26.4
Q ss_pred cCchhhHHHHHHHHHH---H-HhCCCHH-HHHHHHhhccccc
Q 004703 251 SGDPYLLHCVETAMLL---A-AIGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 251 sGePYI~Hpl~VA~IL---a-~lg~D~~-tIaAALLHDvVED 287 (735)
.+...+.|.++||.+. + .+|+|.+ ...||||||+=.-
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~ 373 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKA 373 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcC
Confidence 3445788999998654 3 5688754 5689999997553
No 78
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=46.49 E-value=49 Score=32.90 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=48.9
Q ss_pred CchhhHHHHHHHHHH---H-HhC--CCH-HHHHHHHhhccccc--cCCCHHH--HHHHhCHHHHHHHHHhhcccccchhh
Q 004703 252 GDPYLLHCVETAMLL---A-AIG--ANS-TVVAAGLLHDTLDD--AFLSYDY--IFRTFGAGVADLVEGVSKLSQLSKLA 320 (735)
Q Consensus 252 GePYI~Hpl~VA~IL---a-~lg--~D~-~tIaAALLHDvVED--T~vT~ee--I~~~FG~eVA~LV~gVTKl~~l~~~~ 320 (735)
.+.--.|-..||.+. + ..+ .|. .++..+|+||+.|- ++++.-. ....+-..-...++.+..+ ++.
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~-- 95 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE-- 95 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC--
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh--
Confidence 355678999888653 2 234 664 58888899999994 3444322 0111112222222222221 110
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCceeehhhhhhhhhhcc
Q 004703 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (735)
Q Consensus 321 r~~~~~~k~~qaE~lRkmLLAm---aD~RVvLIKLADRLhNMR 360 (735)
...+.++.++.-+ ..+.+.++|-+|+|.-+-
T Consensus 96 ---------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 ---------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp ---------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 1123344443322 378889999999998774
No 79
>PRK00106 hypothetical protein; Provisional
Probab=45.03 E-value=72 Score=37.93 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.5
Q ss_pred cCchhhHHHHHHHHHH----HHhCCC-HHHHHHHHhhccccc
Q 004703 251 SGDPYLLHCVETAMLL----AAIGAN-STVVAAGLLHDTLDD 287 (735)
Q Consensus 251 sGePYI~Hpl~VA~IL----a~lg~D-~~tIaAALLHDvVED 287 (735)
.|...+.|.++||.+. ..+|+| ...-.||||||+=..
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 4667789999998754 367888 456789999998654
No 80
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=44.75 E-value=76 Score=35.14 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHh-----CCCHH-HHHHHHhhcccc
Q 004703 255 YLLHCVETAMLLAAI-----GANST-VVAAGLLHDTLD 286 (735)
Q Consensus 255 YI~Hpl~VA~ILa~l-----g~D~~-tIaAALLHDvVE 286 (735)
.+.|-++|+.++..+ .+|.+ .+++|||||+=.
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiGK 197 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGK 197 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhhh
Confidence 578999999887655 46777 566779999753
No 81
>PRK12705 hypothetical protein; Provisional
Probab=43.77 E-value=84 Score=37.13 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=27.8
Q ss_pred cCchhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 004703 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 251 sGePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 287 (735)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 45557899999987553 5688754 5689999999763
No 82
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=43.65 E-value=16 Score=33.06 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=38.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCC------------CccccccccCCeec-CCCCCcCCCCCEEEEe
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFP------------LKEELRPRLNHKAV-GDPRCKLKMGDVVELT 695 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~------------~~~~vgakVNgr~V-~~l~~~Lk~GDvVEIi 695 (735)
+.-.+++|+|.-+.|-.||+|..+ |+. ......+|-.|++- ..-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfek----gFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEK----GFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCccccccc----CcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 678899999999999999999765 310 00111344455531 1237999999999863
No 83
>PRK11507 ribosome-associated protein; Provisional
Probab=43.61 E-value=19 Score=31.50 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.3
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.-..=..+|..||+|++-
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEEC
Confidence 4789999764346999999999984
No 84
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=43.54 E-value=26 Score=34.30 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHH----HhCCCH-HHHHHHHhhcccc
Q 004703 253 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLD 286 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa----~lg~D~-~tIaAALLHDvVE 286 (735)
+.-+.|.+.||.+.. .++.|+ ..-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 344789999886543 346654 5678999999876
No 85
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=43.06 E-value=1.1e+02 Score=28.22 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC-----cchHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcC
Q 004703 367 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 441 (735)
Q Consensus 367 ~ekq~riA~ETl~IYAPLA~RLG-----i~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~g 441 (735)
++..+.+|...=.=|-.+|.+|| +.. .+++.+..+|=.-..|..+.+.|+.-...+--+.-...|-++|...+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 45667777777777889999999 665 56777777765444566666666543211111233455556666666
Q ss_pred Cc
Q 004703 442 IS 443 (735)
Q Consensus 442 I~ 443 (735)
++
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 86
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=42.83 E-value=27 Score=35.96 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHH----hCCCH-HHHHHHHhhccccccC
Q 004703 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 289 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa~----lg~D~-~tIaAALLHDvVEDT~ 289 (735)
++-+.|+++||....+ +++|. ..-+||+|||.--+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3458999999876543 47775 4679999999977643
No 87
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=42.74 E-value=18 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
.++|||+.+. +++.++.||+|+|-.
T Consensus 35 rV~vNG~~aK-pS~~VK~GD~l~i~~ 59 (100)
T COG1188 35 RVKVNGQRAK-PSKEVKVGDILTIRF 59 (100)
T ss_pred eEEECCEEcc-cccccCCCCEEEEEe
Confidence 4689999994 899999999999975
No 88
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.54 E-value=15 Score=42.67 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCc----c
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDK----S 702 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~----~ 702 (735)
++|+|. .+...--+.||.|.|.. ..++ .+.++-++|||.+- |++.+|+ ||-.|+++-..+. -
T Consensus 4 ~Lpdg~--~~~~~~w~ttp~~ia~~-s~~l---------a~~~~~~~vn~~~~-Dl~rp~e-~~~lell~f~~~~~k~vf 69 (560)
T KOG1637|consen 4 VLPDGK--VVEGVSWETTPYDIACQ-SKGL---------ADDAVIAKVNGVLW-DLDRPLE-GDCLELLKFDDDEGKDVF 69 (560)
T ss_pred ecCCcc--eeeeeeccCChhHHhhh-ccch---------hhhhHHHhhcCcee-ccCCcch-hhHHHHccCCCcccceee
Confidence 367775 45566789999999987 2222 25788899999987 8999998 6669999844433 2
Q ss_pred HH----HHHHHHHHHHHcccCcCCCC
Q 004703 703 LT----EYREEIQRMYERGLAVSNTG 724 (735)
Q Consensus 703 l~----~~r~~i~rm~~~~~~~~~~~ 724 (735)
|- .+-+++.+.|-+-+-.||+.
T Consensus 70 whssahvlg~a~e~~~g~~lc~Gpp~ 95 (560)
T KOG1637|consen 70 WHSSAHVLGEALEQEYGAHLCIGPPI 95 (560)
T ss_pred eehhhhHhhHHHHHhcCeeEeeCCCC
Confidence 52 57889999998889999974
No 89
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=42.39 E-value=13 Score=32.09 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=14.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEE
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVEL 694 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEI 694 (735)
.++|||+....-..+|+.||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 478999987555799999999998
No 90
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=42.30 E-value=32 Score=34.11 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=34.7
Q ss_pred CchhhHHHHHHHHHHH----HhC-----CCH-HHHHHHHhhccccccC--CC----HHHHHHH--hCHHHHHHHHH
Q 004703 252 GDPYLLHCVETAMLLA----AIG-----ANS-TVVAAGLLHDTLDDAF--LS----YDYIFRT--FGAGVADLVEG 309 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa----~lg-----~D~-~tIaAALLHDvVEDT~--vT----~eeI~~~--FG~eVA~LV~g 309 (735)
.+..+.|.+.|+.+.. .++ .|. ...+||||||+-.... .. -.++.+. |.++++.+|..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456789999886533 344 443 5678999999866321 11 1123333 44677777753
No 91
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=40.90 E-value=45 Score=35.81 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tI-aAALLHDv 284 (735)
-|.+|+++....-...-.....|=|.|.++.|+....-.-+++-+ .+||+||.
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 366676665554433333456789999999999998765555554 79999997
No 92
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=40.77 E-value=94 Score=38.81 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=49.9
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCC---CCCcccc--ccccCCeecCCCCCcCCCCCEEEEeeCCCCc
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYG---FPLKEEL--RPRLNHKAVGDPRCKLKMGDVVELTPAIPDK 701 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g---~~~~~~v--gakVNgr~V~~l~~~Lk~GDvVEIita~p~~ 701 (735)
|+++| ..+++|+|.|+++.|.+.|-.+... +|- .+...|- -+.|||+.++.=.++.+.|.+|+--+ +
T Consensus 4 i~IdG---~~v~~~~G~til~aa~~~gi~iP~l-C~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s----~ 75 (819)
T PRK08493 4 ITING---KECEAQEGEYILNVARRNGIFIPAI-CYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNT----P 75 (819)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCccccc-cccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecC----H
Confidence 55666 5789999999999999977555321 110 0001122 24789998754467888888766432 2
Q ss_pred cHHHHHHHHHHHH
Q 004703 702 SLTEYREEIQRMY 714 (735)
Q Consensus 702 ~l~~~r~~i~rm~ 714 (735)
...+.|..+.+++
T Consensus 76 ~v~~~Rk~vle~l 88 (819)
T PRK08493 76 NLMDERNAIMQTY 88 (819)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666666
No 93
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=40.03 E-value=26 Score=27.75 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+++|||+.+...++.++.||+|.|..
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEcC
Confidence 57899999844799999999998764
No 94
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=39.88 E-value=1.2e+02 Score=31.84 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=46.4
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCC---CCcccc--ccccCCe--ecCCCCCcCCCCCEEEEeeCCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGF---PLKEEL--RPRLNHK--AVGDPRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~---~~~~~v--gakVNgr--~V~~l~~~Lk~GDvVEIita~p 699 (735)
|+++| ..++.|+|.|++|.|.+.|-.+... .+.. +...|- -++|||+ +++.=.++++.|-.|+--+
T Consensus 6 i~idg---~~~~~~~g~til~a~~~~gi~ip~~-C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~--- 78 (234)
T PRK07569 6 LTIDD---QLVSAREGETLLEAAREAGIPIPTL-CHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNT--- 78 (234)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCCCCcC-cCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECC---
Confidence 34555 4699999999999999876554331 1100 001121 2578885 3433468888888776542
Q ss_pred CccHHHHHHHHHHHH
Q 004703 700 DKSLTEYREEIQRMY 714 (735)
Q Consensus 700 ~~~l~~~r~~i~rm~ 714 (735)
+.+.++|+.+..++
T Consensus 79 -~~~~~~rk~~l~~l 92 (234)
T PRK07569 79 -PRLQEYRRMIVELL 92 (234)
T ss_pred -HHHHHHHHHHHHHH
Confidence 24555555554444
No 95
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.63 E-value=1.3e+02 Score=26.79 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCc
Q 004703 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS 443 (735)
Q Consensus 366 p~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~~-re~~i~~v~~~L~~~L~~~gI~ 443 (735)
+.+.-..+|...=.=+-+||.+||+.. .+++.+- .-+|+.+....+.|..-. ++. -+.-.+.|.++|.+.|+.
T Consensus 6 t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g-~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 6 TGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREG-SQATPETLITALNAAGLN 79 (86)
T ss_pred CHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHcCcH
Confidence 444445566666667889999999986 4565544 345777777777776432 222 233456677777776654
No 96
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.48 E-value=97 Score=36.60 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.8
Q ss_pred CchhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 004703 252 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 286 (735)
|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3346889999987643 5688864 456999999854
No 97
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=38.71 E-value=1.5e+02 Score=33.28 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=72.6
Q ss_pred hhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh---------hhhhhHHHHHHHHHHHHHhcCCc------eecccc
Q 004703 385 ANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC---------FDEAMVTSAIEKLEQALKDKNIS------FLVLCG 449 (735)
Q Consensus 385 A~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~---------~re~~i~~v~~~L~~~L~~~gI~------~~~V~g 449 (735)
.=|+|..--..|+-+.--+...|.....+....... ..-+.+..-++.|.+.|+..++. +.+|--
T Consensus 218 GlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv 297 (356)
T COG0079 218 GLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLV 297 (356)
T ss_pred hhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEE
Confidence 457777544556666666777777655555443321 11234556667788888886632 123444
Q ss_pred cccC--hHHHHHHHhhcCCCCCcccc--c--eEEEEEeCChHHHHHHHHHHHhhc
Q 004703 450 RHKS--LYSIHCKMLKKKLTMDEIHD--I--YGLRLIVENEEDCYQALRVVHQLW 498 (735)
Q Consensus 450 R~Ks--~ySI~~Km~rk~~~~~eI~D--l--~giRIIv~~~~DCY~vlgiIh~~~ 498 (735)
|.+. ...++++|.++|.-..+..+ + -.+||.+.+.+++.+++..|.+..
T Consensus 298 ~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~ 352 (356)
T COG0079 298 RVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVL 352 (356)
T ss_pred ECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 5443 44799999999864433332 2 259999999999999999887643
No 98
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=37.10 E-value=1.2e+02 Score=37.14 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=79.9
Q ss_pred CCHHHHHHHHhhccccccC---CCHHHHHH---HhCHHHHHHHHHh-hcccccchhhhhccccchHHHHHHHHHHHh---
Q 004703 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMFL--- 340 (735)
Q Consensus 271 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gV-TKl~~l~~~~r~~~~~~k~~qaE~lRkmLL--- 340 (735)
.|+.++++.=|..++.... ++.+|+++ .+.++-..+|+++ -+.-.+.. -.+-+|++|-
T Consensus 480 vd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~------------l~~VLq~LL~E~V 547 (694)
T PRK12792 480 VDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSG------------LQAVLKLLLAERV 547 (694)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHH------------HHHHHHHHHHcCC
Confidence 3788888888877776532 45554443 3444445555553 22222221 1234555442
Q ss_pred hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhh
Q 004703 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK 403 (735)
Q Consensus 341 AmaD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFr 403 (735)
++.|.+.++=-|||.-...+....+.+.-|+++++..-.-|++ .++|-.+.+..++|++--.
T Consensus 548 sIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~~ 609 (694)
T PRK12792 548 SIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFHQ 609 (694)
T ss_pred ccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHHH
Confidence 3348888888899988777777777888899999988888888 7888889999999986543
No 99
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=36.28 E-value=16 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=18.0
Q ss_pred ccccCCeecCC-CCCcCCCCCEEEE
Q 004703 671 RPRLNHKAVGD-PRCKLKMGDVVEL 694 (735)
Q Consensus 671 gakVNgr~V~~-l~~~Lk~GDvVEI 694 (735)
|..|||+.+.+ -.++|++||+|+|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 67899998852 2699999999986
No 100
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=36.08 E-value=25 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.6
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.-..=..+|..||+|||=
T Consensus 38 ~V~vNGe~EtRRgkKlr~gd~V~i~ 62 (73)
T COG2501 38 EVKVNGEVETRRGKKLRDGDVVEIP 62 (73)
T ss_pred eEEECCeeeeccCCEeecCCEEEEC
Confidence 5799999754446999999999984
No 101
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=35.56 E-value=57 Score=40.21 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=53.0
Q ss_pred EEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCC---CCCccccc--cccCCeecCCCCCcCCCCCEEEEeeCCC
Q 004703 625 FVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYG---FPLKEELR--PRLNHKAVGDPRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 625 fVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g---~~~~~~vg--akVNgr~V~~l~~~Lk~GDvVEIita~p 699 (735)
+.++++| .-++.|+|+|++++|-+-|.++..+ +|. .|+..|-- +-+||++++.=.+++..|.+|.-.+
T Consensus 6 i~vtidg---~~~~v~~G~tiL~a~~~~gI~iP~i-Cy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s--- 78 (978)
T COG3383 6 ITVTIDG---RSIEVEEGTTILRAANRNGIEIPHI-CYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNS--- 78 (978)
T ss_pred EEEEECC---eEEecCCChHHHHHHHhcCCcccce-eccCCCCcccccceEEEEecCceeccccccccCCcEEeccc---
Confidence 4567777 5889999999999999865554321 121 02222221 4589999876789999999875432
Q ss_pred CccHH-HHHHHHHHHH
Q 004703 700 DKSLT-EYREEIQRMY 714 (735)
Q Consensus 700 ~~~l~-~~r~~i~rm~ 714 (735)
+-.. -.+++++|+.
T Consensus 79 -~rvk~~r~~~md~~l 93 (978)
T COG3383 79 -ERVKEARREAMDRIL 93 (978)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 2233 3456666666
No 102
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=34.54 E-value=41 Score=37.60 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHH----HhCCCHHH-HHHHHhhcccc
Q 004703 255 YLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLD 286 (735)
Q Consensus 255 YI~Hpl~VA~ILa----~lg~D~~t-IaAALLHDvVE 286 (735)
=++|.++|+.+-. .++.+++. -+|||+||+=-
T Consensus 63 R~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiGh 99 (336)
T PRK01286 63 RLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLGH 99 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 3899999998654 45666554 47899999844
No 103
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=33.70 E-value=55 Score=30.94 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=32.4
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcc----ccccccCCeecCCCCCcCCCCC-----EEEEeeC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKE----ELRPRLNHKAVGDPRCKLKMGD-----VVELTPA 697 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~----~vgakVNgr~V~~l~~~Lk~GD-----vVEIita 697 (735)
-++.++|.|++|....|..+...--.|...=.+ .=+++|||+++-.=.+.++... .|+|-|.
T Consensus 22 ~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~~~~~~~i~IePL 92 (110)
T PF13085_consen 22 EVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLIEKFGNVITIEPL 92 (110)
T ss_dssp EEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCTTSETBEEEEEES
T ss_pred EecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhccCCCcceEEEEEC
Confidence 456789999999998873331100000000011 1268999998511134444443 4666663
No 104
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=33.62 E-value=75 Score=32.50 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHH---HH-HhCCCHHH-HHHHHhhccccc-c--------CCCHHHHHHH-hCHHHHHHHHHhhcc
Q 004703 253 DPYLLHCVETAML---LA-AIGANSTV-VAAGLLHDTLDD-A--------FLSYDYIFRT-FGAGVADLVEGVSKL 313 (735)
Q Consensus 253 ePYI~Hpl~VA~I---La-~lg~D~~t-IaAALLHDvVED-T--------~vT~eeI~~~-FG~eVA~LV~gVTKl 313 (735)
+..+-||++|+.. || ++|-|++. -.+|||||.=-+ | -.+.+-+++. ..++|++.|.+=...
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~ 121 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAY 121 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhh
Confidence 5678899987653 44 78988764 578999997322 1 1334444443 678888888765443
No 105
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=33.55 E-value=1.3e+02 Score=25.41 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=38.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..++...++|+-+|.-.+.++.. =.-+||-++ .-+..|+.||.|-.|.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~~D-------------I~I~NGF~~-~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPDAD-------------IVILNGFPT-KEDIELKEGDEVFLIK 55 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCCCC-------------EEEEcCccc-CCccccCCCCEEEEEe
Confidence 57889999999999988765421 135899998 4899999999998764
No 106
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=33.32 E-value=51 Score=34.20 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=36.4
Q ss_pred EEecCCCCCHhHhHHhhcCC-CCCCCCCCCC--Cccc--cccccCCeecCCCCCcCCC-CC---EEEEeeCCC
Q 004703 636 VQEFPTSSTVMDLLERAGRG-SSRWSPYGFP--LKEE--LRPRLNHKAVGDPRCKLKM-GD---VVELTPAIP 699 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~-~~~~~~~g~~--~~~~--vgakVNgr~V~~l~~~Lk~-GD---vVEIita~p 699 (735)
.++.+.|.|++|++..|+.. ....+ |... ...| =.++|||+++..-.+.++. |. +||-++..|
T Consensus 18 ~v~~~~~~tvl~~l~~i~~~~~~~l~-~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~~~iepl~~~p 89 (220)
T TIGR00384 18 EVPADEGMTVLDALNYIKDEQDPSLA-FRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPVMKIEPLPNLP 89 (220)
T ss_pred EEeCCCCCcHHHHHHHHHHhcCCCce-eecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCcEEEeeCCCCc
Confidence 44677999999999988621 11110 0000 0011 1478999987335677777 76 455555444
No 107
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=32.56 E-value=45 Score=36.87 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHH----HhCCC-HHHHHHHHhhccccc
Q 004703 253 DPYLLHCVETAMLLA----AIGAN-STVVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa----~lg~D-~~tIaAALLHDvVED 287 (735)
++...|.+.||.+.. .+|.| .+.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 456789999987554 34665 456789999998663
No 108
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.33 E-value=50 Score=31.91 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhcCCceeccc----ccccChHH----HHHHHhhcCCCCCccccceEEEEE
Q 004703 425 MVTSAIEKLEQALKDKNISFLVLC----GRHKSLYS----IHCKMLKKKLTMDEIHDIYGLRLI 480 (735)
Q Consensus 425 ~i~~v~~~L~~~L~~~gI~~~~V~----gR~Ks~yS----I~~Km~rk~~~~~eI~Dl~giRII 480 (735)
+...+...+-.+|++.||...-|+ ||++...- +.++|.++|++..+|.-..|+=|-
T Consensus 61 ~y~k~skkvlkaleq~gI~vIPvk~KgrGrprkyd~~t~~~i~emlr~gk~preIsk~lGIpir 124 (139)
T COG1710 61 LYPKVSKKVLKALEQMGIKVIPVKLKGRGRPRKYDRNTLLRIREMLRNGKTPREISKDLGIPIR 124 (139)
T ss_pred hhhHHHHHHHHHHHhCCceEeeeeecCCCCCcccchhHHHHHHHHHHcCCCHHHHHHhhCCchh
Confidence 334555555667888888765555 78888777 899999999999999988887553
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.32 E-value=9.2e+02 Score=28.62 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=47.1
Q ss_pred ccCCCHHHHHHHhC----HHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccc
Q 004703 287 DAFLSYDYIFRTFG----AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 362 (735)
Q Consensus 287 DT~vT~eeI~~~FG----~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL 362 (735)
+..+|.++|.+..| ..|.+|++.+.+-+. ......++.++..-.|+..++--|++.++++..+
T Consensus 241 ~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~-------------~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~ 307 (507)
T PRK06645 241 DNIISPQVINQMLGLVDSSVIIEFVEYIIHRET-------------EKAINLINKLYGSSVNLEIFIESVSDFIAYLNKV 307 (507)
T ss_pred CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44699999999887 467888888755221 1123456666544459999999999999999877
Q ss_pred cCCC
Q 004703 363 DALP 366 (735)
Q Consensus 363 ~~lp 366 (735)
+.++
T Consensus 308 k~~~ 311 (507)
T PRK06645 308 KMLP 311 (507)
T ss_pred Hhcc
Confidence 6554
No 110
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=30.58 E-value=1.3e+02 Score=36.94 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=84.1
Q ss_pred HHHHHHHhC---CCHHHHHHHHhhccccccC---CCHHHHH---HHhCHHHHHHHHHhhcccccchhhhhccccchHHHH
Q 004703 262 TAMLLAAIG---ANSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 332 (735)
Q Consensus 262 VA~ILa~lg---~D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qa 332 (735)
-...+...| .|+.++++.-|..++.... ++.+|++ +..+++--.||+.+.+.-.+.. -.
T Consensus 454 ~~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~------------i~ 521 (677)
T TIGR01399 454 GAEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQR------------IA 521 (677)
T ss_pred HHHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HH
Confidence 334444555 3788888888888876432 5555544 3355666667777633222221 12
Q ss_pred HHHHHHHh---hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhh
Q 004703 333 DRLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 402 (735)
Q Consensus 333 E~lRkmLL---AmaD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaF 402 (735)
+-+|++|- ++.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|++-.+.|-...+.-++|+.--
T Consensus 522 ~VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~ 594 (677)
T TIGR01399 522 EVLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIR 594 (677)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHH
Confidence 34555553 33488888888999887777777777888899888777767665556778888888887654
No 111
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=28.19 E-value=60 Score=37.50 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcCCccc--cCc---hhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 004703 230 EDFVIKAFYEAERAHRGQMRA--SGD---PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~Rk--sGe---PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 286 (735)
.++|...-.|-.-.++-|.-. .++ .=++|.++||.+-. .++.+.+ +.+|||+||+=-
T Consensus 41 rdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 41 RARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred HHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 355555555555566666432 222 33799999998765 4566544 558889999844
No 112
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=27.18 E-value=3.1e+02 Score=29.71 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcCCc------eecccccccChHHHHHHHhhcCCCCCccccceEEEEEeC---ChHHHHHHHHHHHh
Q 004703 426 VTSAIEKLEQALKDKNIS------FLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE---NEEDCYQALRVVHQ 496 (735)
Q Consensus 426 i~~v~~~L~~~L~~~gI~------~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~---~~~DCY~vlgiIh~ 496 (735)
+.+..+.|++.|++.+.. ...|.-+.+....+.++|.++|.-......-..+||.+. +.+|+.+++..|.+
T Consensus 293 ~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 293 CMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 344445555666654432 112445667777899999988764433222246999996 78999999888764
No 113
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=26.77 E-value=1.5e+02 Score=36.51 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=50.3
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCC------CCCCCCCCcccc--ccccCC--eecCCCCCcCCCCCEEEEee
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSR------WSPYGFPLKEEL--RPRLNH--KAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~------~~~~g~~~~~~v--gakVNg--r~V~~l~~~Lk~GDvVEIit 696 (735)
|.+|| .-+++|+|.|++..|...|.++.. +|.+| .|- -+.|+| |+++.=.++..+|-+|.+-
T Consensus 4 I~IDG---~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~G----aCRmClVEveg~~k~~~SC~tpv~dGM~I~T~- 75 (693)
T COG1034 4 ITIDG---KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAG----ACRMCLVEVEGAPKLVASCATPVTDGMVISTN- 75 (693)
T ss_pred EEECC---EEEecCCCcHHHHHHHHcCCCCCcccccCCCCccc----ceeEEEEEecCCCccccccccccCCCeEEecC-
Confidence 34455 689999999999999987666543 22111 111 145777 8886557899999995432
Q ss_pred CCCCccHHHHHHHHHHHH
Q 004703 697 AIPDKSLTEYREEIQRMY 714 (735)
Q Consensus 697 a~p~~~l~~~r~~i~rm~ 714 (735)
.+-..++|+.|-+|+
T Consensus 76 ---s~~vk~~R~~vmE~L 90 (693)
T COG1034 76 ---SEEVKKAREGVMEFL 90 (693)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 223556677766666
No 114
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=26.28 E-value=51 Score=34.10 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.5
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEeeC
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTPA 697 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIita 697 (735)
.+.|||+.|..+++.|+.||+|+|-..
T Consensus 116 ~V~VNgk~v~~ps~~V~~GD~I~V~~~ 142 (200)
T TIGR01017 116 HILVNGKKVDIPSYQVRPGDIISIKEK 142 (200)
T ss_pred CEEECCEEeCCCCCCCCCCCEEEEeeC
Confidence 367999998557999999999998643
No 115
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=25.70 E-value=52 Score=34.09 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.4
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEeeC
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTPA 697 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIita 697 (735)
.+.|||+.|..+++.|+.||+|+|-..
T Consensus 119 ~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 119 HILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred cEEECCEEECCCCcCCCCCCEEEECCc
Confidence 367999998547999999999998753
No 116
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=24.99 E-value=2.2e+02 Score=34.00 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=47.1
Q ss_pred EEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCC---CCcccc--ccccCCe---ecCCCCCcCCCCCEEEEeeCCC
Q 004703 628 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGF---PLKEEL--RPRLNHK---AVGDPRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 628 ~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~---~~~~~v--gakVNgr---~V~~l~~~Lk~GDvVEIita~p 699 (735)
+.+| ..++.|+|.|++|.|.+.|-++... +|-. +...|- -+.|+|+ +|+.=.++.++|-+|+--
T Consensus 2 ~idg---~~~~~~~g~~il~a~~~~gi~ip~~-C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~---- 73 (603)
T TIGR01973 2 FIDG---KELEVPKGTTVLQACLSAGIEIPRF-CYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTN---- 73 (603)
T ss_pred EECC---EEEEeCCCCHHHHHHHHcCCCcccc-CCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeC----
Confidence 3455 5899999999999999876555431 1100 011121 1456774 565447888888877652
Q ss_pred CccHHHHHHHHHHHH
Q 004703 700 DKSLTEYREEIQRMY 714 (735)
Q Consensus 700 ~~~l~~~r~~i~rm~ 714 (735)
++...++|+.+-+|+
T Consensus 74 ~~~~~~~r~~~~e~l 88 (603)
T TIGR01973 74 SEKVKKAREGVMEFL 88 (603)
T ss_pred CHHHHHHHHHHHHHH
Confidence 334555555555554
No 117
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]
Probab=24.97 E-value=59 Score=35.62 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=42.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCcee----------cccccccChHHHHH-----HHhhcCCCCCc----cccceEEEEE
Q 004703 420 CFDEAMVTSAIEKLEQALKDKNISFL----------VLCGRHKSLYSIHC-----KMLKKKLTMDE----IHDIYGLRLI 480 (735)
Q Consensus 420 ~~re~~i~~v~~~L~~~L~~~gI~~~----------~V~gR~Ks~ySI~~-----Km~rk~~~~~e----I~Dl~giRII 480 (735)
.+||.||.++-..+..+|.+++|.+. ..+-.+-.+|.|.+ |+.-++.+|++ ++|=+++-||
T Consensus 65 KYREkYlke~wp~v~raL~e~~i~c~lDL~egsm~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiI 144 (356)
T KOG2874|consen 65 KYREKYLKECWPLVERALDEHHIKCVLDLVEGSMTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDII 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceEEeeccceeEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeee
Confidence 45788999999999999999998753 11223445666643 66678888765 5666666665
No 118
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=24.33 E-value=1.6e+02 Score=31.14 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=31.4
Q ss_pred HHHHHHHhC---CCHHHHHHHHhhccccccCCCHHHHHHHhCHHH
Q 004703 262 TAMLLAAIG---ANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (735)
Q Consensus 262 VA~ILa~lg---~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (735)
|+..+..+| .|.|.++ |++++-+.-....|.+.||.+|
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei 57 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI 57 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee
Confidence 345555566 4888888 9999999999999999999998
No 119
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=23.94 E-value=58 Score=37.58 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhcCCccc-c-C---chhhHHHHHHHHHHHHhC--------------C-CHH-HHHHHHhhcccc
Q 004703 230 EDFVIKAFYEAERAHRGQMRA-S-G---DPYLLHCVETAMLLAAIG--------------A-NST-VVAAGLLHDTLD 286 (735)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~Rk-s-G---ePYI~Hpl~VA~ILa~lg--------------~-D~~-tIaAALLHDvVE 286 (735)
.++|...-.|=.-.+.-|.-. . + ..=++|.++||.+-..++ . +.+ +-+|||+||+=-
T Consensus 29 ~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 29 RARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred HHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCC
Confidence 344544444444445555321 1 1 123799999988765331 1 445 348899999844
No 120
>PRK15337 type III secretion system protein InvA; Provisional
Probab=23.84 E-value=1.7e+02 Score=35.96 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHHhC---CCHHHHHHHHhhcccccc---CCCHHHHHH---HhCHHHHHHHHHhhcccccchhhhhccccchHHHHH
Q 004703 263 AMLLAAIG---ANSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (735)
Q Consensus 263 A~ILa~lg---~D~~tIaAALLHDvVEDT---~vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE 333 (735)
...+...| .|+.+++|.=|..++... -++.+|+++ ...++--.+|+.+.+.-.+.. -.+
T Consensus 465 ~~~a~~~Gytvvd~~svi~tHl~evi~~~a~ellg~qev~~Lld~l~~~~p~Lv~elp~~l~l~~------------i~~ 532 (686)
T PRK15337 465 TEKLAKLGYVLRSAIDELYHCLSVLLLHNINEFFGIQETKHLLDQLEKKYPDLLKEVYRHATVQR------------ISE 532 (686)
T ss_pred HHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCHHHHHHHhccCCHHH------------HHH
Confidence 33444445 378888888887777643 255555443 355566667776633222221 123
Q ss_pred HHHHHHh---hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhh
Q 004703 334 RLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 402 (735)
Q Consensus 334 ~lRkmLL---AmaD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaF 402 (735)
-+|++|- ++.|.+.++=-|||.-..-++...+.+.-|+++++..-.=|+ -.+.|-...+..++|++--
T Consensus 533 VLq~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~-~~g~L~vi~L~~~~E~~l~ 603 (686)
T PRK15337 533 VLQRLLSERISIRNMKLIMEALALWAPREKDVIMLVEHVRGALARYICHKFA-AGGELRAVVLSAEVEDAIR 603 (686)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc-cCCceEEEEeCHHHHHHHH
Confidence 4555442 334888888888998777777777788889999988777777 4666888888888888653
No 121
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=23.74 E-value=57 Score=33.91 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
.+.|||+.|..+++.++.||+|+|-.
T Consensus 115 ~V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 115 HILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred cEEECCEEecCccccCCCCCEEEEcc
Confidence 36899999865799999999999754
No 122
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=23.45 E-value=2.1e+02 Score=23.78 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=42.5
Q ss_pred EEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC----CCCcCCCCCEEEEeeCC
Q 004703 624 VFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 624 vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~----l~~~Lk~GDvVEIita~ 698 (735)
|+|-+.+|.. -.++++...|+.++-..|....+ .+.. ...-..||+.+.+ -++.+++|++|.++...
T Consensus 3 i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~g------~~~~-~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 3 IKVKTLTGKE-IEIDIEPTDKVERIKERVEEKEG------IPPQ-QQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred EEEEeCCCCE-EEEEECCCCCHHHHHHHHhHhhC------CChh-hEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 5666666654 35789999999999988855432 1111 1222245554321 26889999999998643
No 123
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=23.16 E-value=2.1e+02 Score=31.02 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhcc-CcchhhHHHHHHHhh---hhhhhHHHHHHHHHHHHHh
Q 004703 364 ALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-NPDQHTELSSKLVEC---FDEAMVTSAIEKLEQALKD 439 (735)
Q Consensus 364 ~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL-~P~~Y~~i~~~L~~~---~re~~i~~v~~~L~~~L~~ 439 (735)
.+.|+.-+++++|.+.-+-.+... +..-|..|...+=.|+ .+-.|+.+.+++++. .+.+. ++..+++.|+.
T Consensus 7 ~v~p~tV~rl~~~~~~~~~~~k~a--~k~~k~~LH~i~gay~~~~p~~~~ll~~l~~a~~~~D~e~---~~~~~r~lL~~ 81 (251)
T PF07091_consen 7 SVAPETVRRLAREALARRGDLKEA--VKATKRRLHQIFGAYLEGRPDYDALLRKLQEALDVGDPEA---IRAWCRRLLAG 81 (251)
T ss_dssp TB-HHHHHHHHHHHHCTTT-HHHH--HHHHHHHHHCCTCCCSSS---HHHHHHHHHHHHCTTHHHH---HHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccCcCCHHH---HHHHHHHHHhh
Confidence 346777788888887555444433 3457888999888888 444477777777763 23333 34444556664
Q ss_pred cCCceecccccccChHHHHHHHhhcCCCCCccccc---------------eEEEEEeCCh-HHHHHHHHHHHhhccCC-C
Q 004703 440 KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDI---------------YGLRLIVENE-EDCYQALRVVHQLWAEV-P 502 (735)
Q Consensus 440 ~gI~~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl---------------~giRIIv~~~-~DCY~vlgiIh~~~~pi-p 502 (735)
+- +...|...+.-+|.++...=...+.|-|| -+.+++-.++ ..+..+++.+-....+. -
T Consensus 82 Ha----ST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~ 157 (251)
T PF07091_consen 82 HA----STRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHD 157 (251)
T ss_dssp SH----HHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEE
T ss_pred cc----chhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcc
Confidence 32 57899999999999997642223333333 3456666653 45666655554443321 1
Q ss_pred CcccccccC
Q 004703 503 GKMKDYITR 511 (735)
Q Consensus 503 ~r~kDYIa~ 511 (735)
-++.|-...
T Consensus 158 ~~v~Dl~~~ 166 (251)
T PF07091_consen 158 ARVRDLLSD 166 (251)
T ss_dssp EEEE-TTTS
T ss_pred eeEeeeecc
Confidence 245566655
No 124
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.14 E-value=1.1e+03 Score=28.47 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHhC----HHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhccccc
Q 004703 288 AFLSYDYIFRTFG----AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLD 363 (735)
Q Consensus 288 T~vT~eeI~~~FG----~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~ 363 (735)
..+|.++|++.+| ..|.++++.+.+-+ . ......++.++-.-.++..++--|++.+++|-.++
T Consensus 243 g~It~e~V~~llg~~~~~~if~L~~ai~~gd-~------------~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK 309 (598)
T PRK09111 243 GEVTAEAVRDMLGLADRARVIDLFEALMRGD-V------------AAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLK 309 (598)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC-H------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999988 56777777664421 1 01123445543323478788888888888776554
Q ss_pred CC
Q 004703 364 AL 365 (735)
Q Consensus 364 ~l 365 (735)
..
T Consensus 310 ~~ 311 (598)
T PRK09111 310 IV 311 (598)
T ss_pred hc
Confidence 43
No 125
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=23.01 E-value=8.2e+02 Score=24.97 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=60.8
Q ss_pred hhhcCcch-HHHHHHhhhhhccCc-chhhHHHHHHHhh-hhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHH
Q 004703 385 ANRLGIST-WKVQLENLCFKHLNP-DQHTELSSKLVEC-FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461 (735)
Q Consensus 385 A~RLGi~~-iK~ELEDLaFryL~P-~~Y~~i~~~L~~~-~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km 461 (735)
|.+-++.. +..-|..+.+...-| +...+++...... .+...+......|.+.|+++||++..++|=. + ..
T Consensus 12 a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~~gI~~~~lKG~~-----l-~~- 84 (249)
T PF14907_consen 12 ARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRLLAELQEILAALNANGIPVILLKGAA-----L-AQ- 84 (249)
T ss_pred HHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEchHH-----H-HH-
Confidence 33334432 444555555554555 4455555544433 3555566777788889999999976555521 1 11
Q ss_pred hhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhh-ccCC
Q 004703 462 LKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQL-WAEV 501 (735)
Q Consensus 462 ~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~-~~pi 501 (735)
.-.........| +-|.|. ++|..++..++.++ |.+.
T Consensus 85 ~Y~~~~~R~~~D---iDlLV~-~~d~~~a~~~L~~~Gy~~~ 121 (249)
T PF14907_consen 85 LYPDPGLRPMGD---IDLLVP-PEDLERAVELLEELGYRIE 121 (249)
T ss_pred hCCCCCCCCCCC---eEEEEe-CCcHHHHHHHHHHcCCEec
Confidence 112222344455 567776 77788888888775 5543
No 126
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=5.9e+02 Score=28.11 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=69.8
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhc----c-CcchhhHHHHHHHhhh----
Q 004703 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH----L-NPDQHTELSSKLVECF---- 421 (735)
Q Consensus 351 KLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFry----L-~P~~Y~~i~~~L~~~~---- 421 (735)
-+.-+.+|.-.+...++++|.++..|++++. +..-|..++-..+--+.|++ + +++=|++.+++.++..
T Consensus 10 C~l~q~~~~~~~~t~ded~~~~~~~~~~~ll---s~~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl 86 (285)
T COG1578 10 CLLRQAVNAVKLATDDEDLRSRIMSEALKLL---SEEYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVL 86 (285)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HhhhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3444555555555668999999999999876 44456666555555555553 3 4555887777665432
Q ss_pred ---hh---hhHHHHHHHHHHHHHhcCCceecccc-cccChHHHHHHHhhcCCCC
Q 004703 422 ---DE---AMVTSAIEKLEQALKDKNISFLVLCG-RHKSLYSIHCKMLKKKLTM 468 (735)
Q Consensus 422 ---re---~~i~~v~~~L~~~L~~~gI~~~~V~g-R~Ks~ySI~~Km~rk~~~~ 468 (735)
|+ ..-..+...++-..-.+-|.+- |.| +++.+....+|+...+...
T Consensus 87 ~~vr~~~~~~~~dl~~Avk~ai~GN~iDfg-v~G~~~~~lee~~~~~~~~~l~i 139 (285)
T COG1578 87 PKVRENIEDTPEDLKTAVKLAIVGNVIDFG-VLGFSPFDLEEEVEKLLDAELYI 139 (285)
T ss_pred HHHHhcccCChHHHHHHHHHHHHhcceeec-cccCCHhHHHHHHHHhhcCcccc
Confidence 22 1112233333333345667774 886 8888888888888777543
No 127
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=22.66 E-value=5.1e+02 Score=26.83 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=13.5
Q ss_pred hhhcCcchHHHH--------HHhhhhhccCcc
Q 004703 385 ANRLGISTWKVQ--------LENLCFKHLNPD 408 (735)
Q Consensus 385 A~RLGi~~iK~E--------LEDLaFryL~P~ 408 (735)
|..+|+..+... ++..+-.|++|+
T Consensus 109 Are~GLeplA~~il~~~~~~~~~~a~~~v~~~ 140 (193)
T PF09371_consen 109 AREAGLEPLADKILEQPESDPEVEAKKFVNEE 140 (193)
T ss_dssp HHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGG
T ss_pred HHHcCCHHHHHHHHcCCccchHHHHHHHhCcc
Confidence 556666554433 455666777776
No 128
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.55 E-value=1.2e+03 Score=27.56 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=52.7
Q ss_pred ccCCCHHHHHHHhCHH----HHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccc
Q 004703 287 DAFLSYDYIFRTFGAG----VADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 362 (735)
Q Consensus 287 DT~vT~eeI~~~FG~e----VA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL 362 (735)
+..+|.+.+.+.+|-. +..+++.+..-+. .......+.+|+-.-.|++-.+.-|.++++|+--+
T Consensus 231 ~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~------------~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~ 298 (484)
T PRK14956 231 DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDN------------HSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLI 298 (484)
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCc------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3458888888877643 3344444322110 01123445555544449999999999999998755
Q ss_pred cCC-CHHHHHHHHHHHHHHHHhhhhhcCcchHH
Q 004703 363 DAL-PLCKRQRFAKETLEIFVPLANRLGISTWK 394 (735)
Q Consensus 363 ~~l-p~ekq~riA~ETl~IYAPLA~RLGi~~iK 394 (735)
+.. ....-..+..|.++-+...|.+++...|-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (484)
T PRK14956 299 RDSLADRESVNFPKEDLQKMKSDFENVDSSKLN 331 (484)
T ss_pred hhcccchhhccCCHHHHHHHHHHHHhcCHHHHH
Confidence 543 22222333444455555555666555443
No 129
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=22.01 E-value=1.1e+02 Score=33.82 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.1
Q ss_pred EEecCCCCCHhHhHHhhcCCCC-CCCCCCCCCc--cc--cccccCCeec
Q 004703 636 VQEFPTSSTVMDLLERAGRGSS-RWSPYGFPLK--EE--LRPRLNHKAV 679 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~-~~~~~g~~~~--~~--vgakVNgr~V 679 (735)
.+++++|.|++|++..|+.++. .+ +|..... .| =+++|||+++
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL-~~~~~c~~~~Cg~C~v~inG~~~ 69 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSL-AFRKNCRNTICGSCAMRINGRSA 69 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCc-EEcCCCCCCCCCCCEEEECCeee
Confidence 4578999999999999876652 11 1110011 11 2578999985
No 130
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=22.00 E-value=69 Score=32.64 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHhhhhhccCcchh--hHHHHHHHhhh-hhhhHHHHHHHHHH--HHHh-----cCCceecccccccChHHHHHHHhhcC
Q 004703 396 QLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQ--ALKD-----KNISFLVLCGRHKSLYSIHCKMLKKK 465 (735)
Q Consensus 396 ELEDLaFryL~P~~Y--~~i~~~L~~~~-re~~i~~v~~~L~~--~L~~-----~gI~~~~V~gR~Ks~ySI~~Km~rk~ 465 (735)
...++|+++|--..+ ++|..+|.+.. .+..|+.|+..|.+ .|++ .-|.-. +... |.+.-|-+++..+|
T Consensus 21 ~~~~~Al~~Ls~R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r-~~~g-~G~~rl~qeL~qkG 98 (174)
T COG2137 21 KGLNRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSR-SRKG-KGPARLKQELKQKG 98 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-Hhcc-cChHHHHHHHHHcC
Confidence 445666776655444 45667777653 45567777776654 2222 112211 2222 66999999999999
Q ss_pred CCCCccccceEEEEEeCChHHHHHHHHHHHhhccC
Q 004703 466 LTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAE 500 (735)
Q Consensus 466 ~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~p 500 (735)
++-+.|.-+.. -.+..++|..+...+.+.|+-
T Consensus 99 i~~~~Ie~aL~---~~~~~~~~~~a~~~~~kk~~~ 130 (174)
T COG2137 99 IDDEIIEEALE---LIDEEDEQERARKVLRKKFKR 130 (174)
T ss_pred CCHHHHHHHHh---ccchHHHHHHHHHHHHHHhCc
Confidence 76433332222 124578899999999988763
No 131
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=21.93 E-value=66 Score=34.56 Aligned_cols=25 Identities=48% Similarity=0.706 Sum_probs=21.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.|...++.++.||+|.|-
T Consensus 209 ~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 209 RLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred eEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4789999996679999999999874
No 132
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=21.76 E-value=2.5e+02 Score=34.60 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=71.7
Q ss_pred CHHHHHHHHhhccccccC---CCHHHHH---HHhCHHHHHHHHHh-hcccccchhhhhccccchHHHHHHHHHHHh---h
Q 004703 272 NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (735)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gV-TKl~~l~~~~r~~~~~~k~~qaE~lRkmLL---A 341 (735)
|+.++++-=|..++.... ++.+|++ +...++=..||+++ -+.-.+.. -.+-+|++|- +
T Consensus 483 dp~svi~THLsevir~~a~ellgrQEvq~LLD~L~~~~p~LVeElvp~~l~l~~------------Iq~VLq~LL~E~VS 550 (697)
T PRK06012 483 DPSTVVATHLTEVIKNHAAELLGRQEVQQLLDRLAKEYPKLVEELVPKVLSLGT------------LQKVLQNLLKERVS 550 (697)
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHhccccCCHHH------------HHHHHHHHHhCCCc
Confidence 667777766666665321 3433332 22333334444442 22211211 1234555542 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhc
Q 004703 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH 404 (735)
Q Consensus 342 maD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFry 404 (735)
+.|.|.++=-|||.-..-+....+.+.-|+++++..-.=|+.--+.|-...+..|+|++--..
T Consensus 551 IRdL~tIlEaLad~a~~~kD~~~LtE~VR~aL~RqI~~~~~~~~g~L~vi~L~p~lE~~l~~s 613 (697)
T PRK06012 551 IRDLRTILETLADYAPITKDPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQS 613 (697)
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEECHHHHHHHHHH
Confidence 348888888888887777777777788888888877666655444566778888888866443
No 133
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=21.69 E-value=5.2e+02 Score=27.81 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCc-e-----ecccccccChHHHHHHHhhcCCCCCccccceEEEEEe---CChHHHHHHHHHHHhhc
Q 004703 428 SAIEKLEQALKDKNIS-F-----LVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIV---ENEEDCYQALRVVHQLW 498 (735)
Q Consensus 428 ~v~~~L~~~L~~~gI~-~-----~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv---~~~~DCY~vlgiIh~~~ 498 (735)
...+.+.+.|++.|+. . ..+..+.+....+.++|.++|.-......--.+||.+ .+++|+.++++.|.+..
T Consensus 290 ~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 290 ENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 3445556666655554 1 1234455666788899988876443333234699977 37899999999887653
No 134
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=21.67 E-value=2.3e+02 Score=23.82 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=42.2
Q ss_pred EEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCC----CCCcCCCCCEEEEeeCCC
Q 004703 624 VFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD----PRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 624 vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~----l~~~Lk~GDvVEIita~p 699 (735)
|||-++.|.. -.++++...|+.||-..|....+. . .+. ....--.||+...+ .++.+++|++|-++-.+|
T Consensus 3 i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~~~i-~---~~~-~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 3 ITFKTLKQQT-FPIEVDPDDTVAELKEKIEEEKGC-D---YPP-EQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred EEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhhCC-C---CCh-hHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 5666666654 357899999999999888543221 0 000 11122245665421 147899999998876554
No 135
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=21.55 E-value=2.9e+02 Score=33.79 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=46.9
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCC---Cccccc--cccCC---eecCCCCCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFP---LKEELR--PRLNH---KAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~---~~~~vg--akVNg---r~V~~l~~~Lk~GDvVEIita~ 698 (735)
|+++| ..+++|+|.|++|.|.+.|-++... +|-.. ...|-= +.|+| ++|+.=.+++++|-+|. |.
T Consensus 4 ~~Idg---~~v~v~~g~til~a~~~~gi~IP~l-Cy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~--T~- 76 (687)
T PRK09130 4 LKVDG---KEIEVPDGYTLLQACEAAGAEIPRF-CYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIF--TN- 76 (687)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCCcCcc-cCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEE--eC-
Confidence 45566 5889999999999999887666432 22100 011211 34555 36653467777777765 42
Q ss_pred CCccHHHHHHHHHHHH
Q 004703 699 PDKSLTEYREEIQRMY 714 (735)
Q Consensus 699 p~~~l~~~r~~i~rm~ 714 (735)
++-..++|+.+-+++
T Consensus 77 -s~~v~~~r~~~le~l 91 (687)
T PRK09130 77 -TPMVKKAREGVMEFL 91 (687)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 233556666655555
No 136
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=21.42 E-value=4e+02 Score=32.79 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=76.8
Q ss_pred CHHHHHHHHhhccccccC---CCHHHHHH---HhCHHHHHHHHHhhc-ccccchhhhhccccchHHHHHHHHHHHh---h
Q 004703 272 NSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSK-LSQLSKLARENNTASKTVEADRLHTMFL---A 341 (735)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTK-l~~l~~~~r~~~~~~k~~qaE~lRkmLL---A 341 (735)
|+.++++.=|..++.... ++.+|+++ ...++--.+|+++.. .-.+.. -.+-+|++|- +
T Consensus 467 d~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~~~~p~lveel~p~~~~l~~------------l~~VLq~LL~E~Vs 534 (678)
T TIGR01398 467 DPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGT------------IQKVLQLLLRERVS 534 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHChHHHHHhccCCCCHHH------------HHHHHHHHHhcCCc
Confidence 777777777777775432 45444333 344455556666533 111111 1234455442 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhh
Q 004703 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK 403 (735)
Q Consensus 342 maD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFr 403 (735)
+.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|++--+.|-...+..++|++-..
T Consensus 535 IRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~l~p~~E~~l~~ 596 (678)
T TIGR01398 535 IRNLPTILETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAE 596 (678)
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHHH
Confidence 34888888888888777777777778889999988777777666668888888888887543
No 137
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=21.26 E-value=2.1e+02 Score=35.07 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=109.7
Q ss_pred HHHHHHhC---CCHHHHHHHHhhcccccc---CCCHHHHH---HHhCHHHHHHHHHhhcccccchhhhhccccchHHHHH
Q 004703 263 AMLLAAIG---ANSTVVAAGLLHDTLDDA---FLSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (735)
Q Consensus 263 A~ILa~lg---~D~~tIaAALLHDvVEDT---~vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE 333 (735)
...+...| .|+.+++|-=|..++... -++.+|++ +...++--+||+.+.+.-.+.. -.+
T Consensus 451 ~~~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~------------i~~ 518 (675)
T PRK12720 451 AEQAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGK------------IAE 518 (675)
T ss_pred HHHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHH
Confidence 33444445 378888888777777543 24555443 3355566667777633222221 123
Q ss_pred HHHHHHh---hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcc--
Q 004703 334 RLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD-- 408 (735)
Q Consensus 334 ~lRkmLL---AmaD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~-- 408 (735)
-+|.+|- ++.|.+.++=-|||.-..-++...+.+.-|+++++..-.-|+.-.+.|-...+..++|+.--.-+...
T Consensus 519 VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~~~i~~~~~ 598 (675)
T PRK12720 519 ILQRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLIRESIRQTSA 598 (675)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHHHHHHHHhcccC
Confidence 4555442 33488888888888877767776777778899988777777765666778888888887653322211
Q ss_pred -hhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcC------CCCCccccceEEEEE
Q 004703 409 -QHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKK------LTMDEIHDIYGLRLI 480 (735)
Q Consensus 409 -~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~------~~~~eI~Dl~giRII 480 (735)
.|..+ ..+..+++.+.+++.+++..-..- +..-. +-...+|+.++. ++++||.+-.-++++
T Consensus 599 g~~~~l--------~P~~~~~l~~~~~~~~~~~~~pVl-lts~~--iR~~lr~li~~~~p~l~VLS~~Ei~~~~~i~~~ 666 (675)
T PRK12720 599 GTYSAL--------SSRHSTQILQLIEQALKQSQKLVL-VTSVD--VRRFLRKIIERTLFDLPVLSWQELGDEAEIKVV 666 (675)
T ss_pred CCcccc--------CHHHHHHHHHHHHHHHHccCCcEE-EeCHH--HHHHHHHHHHHhCCCCEEeCHhHcCCCCeEEEE
Confidence 01111 123345555566665554311221 21111 223445555543 246777776666554
Done!