Query 004703
Match_columns 735
No_of_seqs 379 out of 2144
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1E-104 4E-109 866.7 29.3 365 214-586 9-378 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 8.3E-44 2.8E-48 368.3 13.4 190 379-584 19-219 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 4.4E-38 1.5E-42 321.1 13.7 153 444-600 42-210 (226)
4 3nqw_A CG11900; stringent resp 100.0 2.2E-34 7.6E-39 284.3 10.1 166 228-404 4-176 (179)
5 3nr1_A HD domain-containing pr 100.0 7.7E-33 2.6E-37 273.1 12.5 145 229-384 3-156 (178)
6 3hvz_A Uncharacterized protein 99.6 4E-17 1.4E-21 141.1 2.4 66 608-699 5-70 (78)
7 2eki_A DRG 1, developmentally- 99.2 2.3E-11 7.8E-16 108.1 5.4 73 609-698 10-88 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 98.8 2.3E-09 7.8E-14 89.6 4.0 63 624-699 3-65 (73)
9 1wwt_A Threonyl-tRNA synthetas 98.7 3.4E-09 1.2E-13 92.2 2.4 67 624-703 12-79 (88)
10 1tke_A Threonyl-tRNA synthetas 98.6 9.4E-09 3.2E-13 104.0 2.5 85 626-723 4-97 (224)
11 1wxq_A GTP-binding protein; st 98.4 5.2E-08 1.8E-12 106.6 2.4 54 635-698 341-396 (397)
12 1f0z_A THis protein; ubiquitin 97.1 0.00042 1.4E-08 57.1 4.7 56 628-698 4-63 (66)
13 1tyg_B YJBS; alpha beta barrel 97.1 0.00064 2.2E-08 59.7 6.0 58 627-698 23-84 (87)
14 2l32_A Small archaeal modifier 97.1 0.00069 2.4E-08 57.6 5.9 53 635-700 13-65 (74)
15 2kl0_A Putative thiamin biosyn 97.0 0.00072 2.5E-08 57.3 5.0 52 635-698 8-62 (73)
16 1qf6_A THRRS, threonyl-tRNA sy 97.0 0.00019 6.4E-09 83.2 1.5 86 626-724 4-98 (642)
17 1ryj_A Unknown; beta/alpha pro 96.9 0.0013 4.3E-08 55.0 5.6 50 637-698 18-67 (70)
18 2k5p_A THis protein, thiamine- 96.9 0.00075 2.6E-08 58.0 4.3 59 627-698 3-66 (78)
19 1rws_A Hypothetical protein PF 96.8 0.00037 1.3E-08 59.3 2.0 52 635-698 23-74 (77)
20 2cu3_A Unknown function protei 96.8 0.0017 5.7E-08 53.2 5.6 51 635-698 7-61 (64)
21 2hj1_A Hypothetical protein; s 96.7 0.00052 1.8E-08 61.5 2.2 57 635-696 28-84 (97)
22 1nyr_A Threonyl-tRNA synthetas 96.5 0.00029 9.9E-09 81.5 -1.0 80 635-724 12-100 (645)
23 2q5w_D Molybdopterin convertin 96.0 0.003 1E-07 52.9 2.5 55 635-698 18-74 (77)
24 1vjk_A Molybdopterin convertin 95.2 0.018 6E-07 50.9 4.6 62 635-698 29-95 (98)
25 4a9a_A Ribosome-interacting GT 95.0 0.013 4.6E-07 63.7 4.0 51 639-696 320-375 (376)
26 3po0_A Small archaeal modifier 94.9 0.022 7.4E-07 49.1 4.2 63 635-698 20-86 (89)
27 3rpf_C Molybdopterin convertin 94.6 0.036 1.2E-06 46.4 4.8 57 636-698 15-71 (74)
28 1jal_A YCHF protein; nucleotid 94.1 0.027 9.4E-07 61.0 3.9 54 635-695 291-360 (363)
29 2ohf_A Protein OLA1, GTP-bindi 93.7 0.029 9.9E-07 61.6 3.0 58 635-699 317-390 (396)
30 2dby_A GTP-binding protein; GD 93.6 0.03 1E-06 60.7 3.0 54 635-695 296-365 (368)
31 1fm0_D Molybdopterin convertin 93.4 0.086 3E-06 44.2 5.0 58 637-698 21-78 (81)
32 2g1e_A Hypothetical protein TA 93.3 0.077 2.6E-06 45.3 4.5 61 636-698 18-87 (90)
33 3b57_A LIN1889 protein; Q92AN1 91.4 0.55 1.9E-05 46.5 8.6 55 231-288 5-64 (209)
34 3dto_A BH2835 protein; all alp 91.0 0.81 2.8E-05 46.2 9.4 54 230-286 4-62 (223)
35 2pjq_A Uncharacterized protein 90.1 0.88 3E-05 45.8 8.8 56 228-286 7-67 (231)
36 2l52_A Methanosarcina acetivor 89.8 0.25 8.6E-06 43.6 4.0 61 636-698 22-96 (99)
37 2pq7_A Predicted HD superfamil 89.7 4.8 0.00016 39.7 13.7 50 232-284 14-68 (220)
38 2qgs_A Protein Se1688; alpha-h 89.3 1.6 5.5E-05 43.7 10.0 54 231-287 5-64 (225)
39 3djb_A Hydrolase, HD family; a 89.2 1.2 4.2E-05 44.9 9.0 55 230-287 4-63 (223)
40 2paq_A 5'-deoxynucleotidase YF 88.8 2.6 8.9E-05 41.8 10.9 95 252-359 29-144 (201)
41 3dwg_C 9.5 kDa culture filtrat 87.1 0.43 1.5E-05 41.2 3.6 60 637-698 21-90 (93)
42 1ni3_A YCHF GTPase, YCHF GTP-b 86.5 0.24 8E-06 54.2 1.9 55 634-695 318-388 (392)
43 1wgk_A Riken cDNA 2900073H19 p 82.0 1.6 5.5E-05 39.8 5.1 62 636-698 33-105 (114)
44 2qjl_A URM1, ubiquitin-related 79.8 1.9 6.4E-05 37.9 4.6 62 636-698 23-96 (99)
45 1v8c_A MOAD related protein; r 79.2 0.98 3.3E-05 43.9 2.8 62 636-699 17-85 (168)
46 2ibn_A Inositol oxygenase; red 72.6 3.6 0.00012 42.3 5.0 55 232-286 37-92 (250)
47 2k9x_A Tburm1, uncharacterized 68.4 4.8 0.00016 36.5 4.4 63 636-698 24-99 (110)
48 3u7z_A Putative metal binding 59.7 6.9 0.00024 35.1 3.7 54 637-695 25-96 (101)
49 2ogi_A Hypothetical protein SA 58.8 7.4 0.00025 37.9 4.1 34 254-287 26-64 (196)
50 3ccg_A HD superfamily hydrolas 54.6 9.6 0.00033 36.7 4.1 33 255-287 20-57 (190)
51 2k6p_A Uncharacterized protein 54.5 7.2 0.00025 33.4 2.8 24 671-695 27-50 (92)
52 2o08_A BH1327 protein; putativ 54.4 9.8 0.00034 36.6 4.1 34 254-287 18-56 (188)
53 4dmb_A HD domain-containing pr 52.8 25 0.00085 35.1 6.8 93 252-360 43-149 (204)
54 2dqb_A Deoxyguanosinetriphosph 51.3 10 0.00036 41.2 4.1 33 254-286 75-112 (376)
55 2cqz_A 177AA long hypothetical 50.0 13 0.00044 35.9 4.1 35 253-287 31-75 (177)
56 1p9k_A ORF, hypothetical prote 44.7 8.4 0.00029 32.2 1.6 25 671-695 47-71 (79)
57 3kh1_A Predicted metal-depende 43.9 29 0.00098 34.5 5.6 56 232-287 9-80 (200)
58 2gz4_A Hypothetical protein AT 42.3 20 0.00069 35.9 4.2 36 252-287 53-90 (207)
59 3fm8_A Kinesin-like protein KI 39.4 12 0.00041 34.5 1.9 24 671-695 91-114 (124)
60 2hek_A Hypothetical protein; p 39.2 19 0.00064 39.0 3.7 35 253-287 49-89 (371)
61 1dm9_A Hypothetical 15.5 KD pr 38.9 16 0.00054 33.9 2.7 24 671-695 35-58 (133)
62 4a5p_A Protein MXIA, protein V 36.6 46 0.0016 36.3 6.2 193 271-480 173-380 (383)
63 4ejq_A Kinesin-like protein KI 36.2 15 0.00053 34.7 2.2 24 671-695 111-134 (154)
64 2huo_A Inositol oxygenase; pro 32.4 48 0.0016 34.8 5.2 53 232-284 76-129 (289)
65 1c05_A Ribosomal protein S4 de 31.1 26 0.00088 33.5 2.8 26 671-696 77-102 (159)
66 1wln_A Afadin; beta sandwich, 30.7 19 0.00064 32.4 1.7 25 671-696 81-105 (120)
67 3gqs_A Adenylate cyclase-like 30.5 17 0.0006 31.7 1.4 24 671-695 70-93 (106)
68 3po8_A RV0020C protein, putati 29.9 22 0.00074 30.7 1.9 23 671-695 66-88 (100)
69 3c8y_A Iron hydrogenase 1; dit 29.2 98 0.0034 35.1 7.6 80 627-714 4-90 (574)
70 2vqe_D 30S ribosomal protein S 27.2 31 0.0011 34.4 2.7 25 672-696 126-150 (209)
71 2kzr_A Ubiquitin thioesterase 27.1 90 0.0031 26.0 5.3 69 624-697 3-77 (86)
72 4h87_A Kanadaptin; FHA domain 27.1 29 0.00098 31.9 2.3 23 671-694 95-119 (130)
73 1xx7_A Oxetanocin-like protein 26.8 51 0.0017 32.2 4.1 35 253-287 36-80 (184)
74 1lgp_A Cell cycle checkpoint p 26.2 36 0.0012 30.0 2.8 27 671-697 69-96 (116)
75 2q14_A Phosphohydrolase; BT420 26.2 26 0.0009 38.5 2.2 32 254-285 55-99 (410)
76 1ynb_A Hypothetical protein AF 25.9 1E+02 0.0035 29.9 6.0 35 253-287 37-79 (173)
77 4i1u_A Dephospho-COA kinase; s 25.2 38 0.0013 33.7 3.0 38 262-303 25-65 (210)
78 3bbn_D Ribosomal protein S4; s 24.4 32 0.0011 34.3 2.2 25 672-696 116-140 (201)
79 3hx1_A SLR1951 protein; P74513 24.3 24 0.00082 32.4 1.2 23 671-695 83-105 (131)
80 3a5i_A Flagellar biosynthesis 23.9 61 0.0021 35.4 4.4 183 272-480 180-383 (389)
81 3irh_A HD domain protein; phos 23.9 31 0.0011 38.8 2.2 31 255-285 87-137 (480)
82 3r8n_D 30S ribosomal protein S 23.3 20 0.00067 36.0 0.4 26 671-696 121-146 (205)
83 3kt9_A Aprataxin; FHA domain, 23.1 27 0.00093 31.2 1.3 25 672-696 66-91 (102)
84 3gw7_A Uncharacterized protein 22.9 44 0.0015 33.9 2.9 32 256-287 27-63 (239)
85 3tm8_A BD1817, uncharacterized 22.7 68 0.0023 33.6 4.4 35 251-285 162-206 (328)
86 3ssb_I IMPI alpha, inducible m 22.2 14 0.00048 26.5 -0.6 15 158-172 11-25 (32)
87 3u1n_A SAM domain and HD domai 21.4 37 0.0013 38.6 2.2 31 255-285 66-111 (528)
88 4egx_A Kinesin-like protein KI 21.2 41 0.0014 32.9 2.2 23 672-695 142-164 (184)
89 3d5l_A Regulatory protein RECX 20.9 42 0.0014 33.5 2.3 100 395-501 61-173 (221)
90 1uht_A Expressed protein; FHA 20.5 33 0.0011 30.4 1.3 24 671-695 77-102 (118)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.3e-104 Score=866.68 Aligned_cols=365 Identities=39% Similarity=0.601 Sum_probs=312.1
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 004703 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (735)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e 293 (735)
+++|++.+..+.+..+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 004703 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (735)
Q Consensus 294 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~r 372 (735)
+|++.||++|+.||+||||+++++... ....|+|++|||||+|+ |+||++|||||||||||++..+|+++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 999999999999999999999876421 23457899999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccccc
Q 004703 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (735)
Q Consensus 373 iA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR 450 (735)
+|+||++|||||||||||++||||||||||+||+|+.|++|.++|.+. .++.+++.+++.|++.|.+.||.+. |+||
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 999999999999999999999999999999999999999999999876 4789999999999999999999985 9999
Q ss_pred ccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCCee
Q 004703 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 530 (735)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~ 530 (735)
+|++||||+||+|++.+|++|+|++|+||||++++|||+++|+||++|+|+|++|||||++||+||||||||+|.+|.|
T Consensus 242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~- 320 (393)
T 1vj7_A 242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG- 320 (393)
T ss_dssp CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhHHHHHHHhhhhcccccCCCC--cchhHHHHHHHHHHHHHHHHHhccC
Q 004703 531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCEAMSK 586 (735)
Q Consensus 531 ~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~--~~~~~~~~~~Wl~~lle~q~e~~~~ 586 (735)
++||||||..||.|||+||++||+||++... ......++++||++|++||++..++
T Consensus 321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~ 378 (393)
T 1vj7_A 321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGD 378 (393)
T ss_dssp EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-------
T ss_pred eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999987432 1123345789999999999887663
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=8.3e-44 Score=368.29 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=140.4
Q ss_pred HHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHH
Q 004703 379 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 458 (735)
Q Consensus 379 ~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~ 458 (735)
.||||||+||||.++|.|+|++.+.|.+ .+.+++.+| +.+...+...+....|. .|++|+|+++||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~~--a~~el~~kl---------~~l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYIQ--AVGELKIKF---------RGIRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHHH--HHHHHHHHH---------HHHHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHH---------HHHHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 6999999999999999999999988643 444444443 22333333333444444 6999999999999
Q ss_pred HHHhhcCCCCC----ccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEE-------cC
Q 004703 459 CKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVT-------GE 527 (735)
Q Consensus 459 ~Km~rk~~~~~----eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~-------~~ 527 (735)
+||+|++.+++ +|+|++|+||||++++|||+++++||+.|+|.|.++||||++||+|||||||++|. ++
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~ 165 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYRSYHVIVEYPVDTISGQ 165 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEESSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCCEEEEEEEEEEEETTEE
T ss_pred HHHHhcCCCccchhhhccccceEEEEEeCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCceeEEEEEEcccccccCC
Confidence 99999999987 79999999999999999999999999999999999999999999999999999997 55
Q ss_pred CeeeEEEEEeehhhHHHHHHHhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 004703 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM 584 (735)
Q Consensus 528 ~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~ 584 (735)
.+.++||||||..||.|||+||+.+|+||...+ ..+.+.+.-++.+++..++.+
T Consensus 166 ~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~~p---~~i~r~L~~~A~~l~~~D~~m 219 (255)
T 3l9d_A 166 RIIMAEIQIRTLAMNFWATIEHSLNYKYHGEFP---EDIKRRLELTSKIAFQLDEEM 219 (255)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999997553 345555665555665555544
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=4.4e-38 Score=321.06 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=131.8
Q ss_pred eecccccccChHHHHHHHhhcCCCCC----ccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccc
Q 004703 444 FLVLCGRHKSLYSIHCKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQS 519 (735)
Q Consensus 444 ~~~V~gR~Ks~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqS 519 (735)
++.|++|+|+++||++||.|++.+++ +|+|++|+||||++++|||+++++||++|++.|.++||||++||+|||||
T Consensus 42 i~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~~d~y~v~~~i~~~~~~~~~~~kDyI~~PK~nGYrS 121 (226)
T 2be3_A 42 IEFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRS 121 (226)
T ss_dssp EEEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCCC
T ss_pred cceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCHHHHHHHHHHHHhccCCceeeecchhhcCCCCCceE
Confidence 44699999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred eeEEEE-------cCCeeeEEEEEeehhhHHHHHHHhhhhcccccCCCCcc-h----hHHHHHHHHHHHHHHHHHhccCC
Q 004703 520 LHTVVT-------GEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS-S----FVLQMVEWARWVLTWQCEAMSKD 587 (735)
Q Consensus 520 LHt~V~-------~~~g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~-~----~~~~~~~Wl~~lle~q~e~~~~~ 587 (735)
||++|. ++.|.++||||||..||.|||+||++||+||++.+..- . .......|.+++.+|+++..+
T Consensus 122 lH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~~~i~~-- 199 (226)
T 2be3_A 122 YHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIRDDIQE-- 199 (226)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--
T ss_pred EEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999997 56789999999999999999999999999998654310 0 112246799999999988876
Q ss_pred CCCCccCCCCCCC
Q 004703 588 RSCVGNGDSIKPP 600 (735)
Q Consensus 588 ~~~~~~~~~~k~~ 600 (735)
+.+|++.++.+
T Consensus 200 --~~~~~~~~~~~ 210 (226)
T 2be3_A 200 --AQALFDPLSRK 210 (226)
T ss_dssp --HHHHCCC----
T ss_pred --hHHHHHHhhHH
Confidence 46778887765
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-34 Score=284.30 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHHHHhcCCccc--cCchhhHHHHHHHHHHH-HhCC-CHHHHHHHHhhccccccCCCHHHHHHHhCHHH
Q 004703 228 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (735)
Q Consensus 228 ~d~~ll~kA~~~A~~aH~GQ~Rk--sGePYI~Hpl~VA~ILa-~lg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (735)
.|.++|.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||++|||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 45688999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHHHH-HHHHHHHHHHHH
Q 004703 304 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 382 (735)
Q Consensus 304 A~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~lp~ekq-~riA~ETl~IYA 382 (735)
+.||++|||++.+++..+ +..|.+++|+ .|+||++||||||+||||++..++++++ ..-+++.++.+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998875332 3456777764 6999999999999999999988776643 233556666777
Q ss_pred hhhhhc--CcchHHHHHHhhhhhc
Q 004703 383 PLANRL--GISTWKVQLENLCFKH 404 (735)
Q Consensus 383 PLA~RL--Gi~~iK~ELEDLaFry 404 (735)
++++.| +-..+..+|.++.-+|
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 777777 3335666666665443
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.98 E-value=7.7e-33 Score=273.11 Aligned_cols=145 Identities=32% Similarity=0.415 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--CchhhHHHHHHHHHH-HHhCC-CHHHHHHHHhhccccccCCCHHHHHHHhCHHHH
Q 004703 229 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (735)
Q Consensus 229 d~~ll~kA~~~A~~aH~GQ~Rks--GePYI~Hpl~VA~IL-a~lg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA 304 (735)
|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| +++|+ |.++++||||||++|||.+|.++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 56889999999999999999986 999999999999999 58996 999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHHH-----HHHHHHHHHH
Q 004703 305 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCK-----RQRFAKETLE 379 (735)
Q Consensus 305 ~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~lp~ek-----q~riA~ETl~ 379 (735)
.||++|||++.+++..+ +..|.+++| ..|+||++||||||+||||++..+++++ ..+|.+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998765322 234667755 3699999999999999999988765543 4566666666
Q ss_pred HHHhh
Q 004703 380 IFVPL 384 (735)
Q Consensus 380 IYAPL 384 (735)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55433
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.64 E-value=4e-17 Score=141.09 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=58.7
Q ss_pred CCCCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCC
Q 004703 608 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLK 687 (735)
Q Consensus 608 ~~~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk 687 (735)
.++||||||+| ++++||+|+|++||||+||++++ ++|++|||||++| +++++|+
T Consensus 5 ~~~i~v~tP~G----------------~~~~lp~GaT~~D~A~~Ih~~lg---------~~~v~AkVNG~~v-~L~~~L~ 58 (78)
T 3hvz_A 5 PEEVFVFTPKG----------------DVISLPIGSTVIDFAYAIHSAVG---------NRMIGAKVDGRIV-PIDYKVK 58 (78)
T ss_dssp -CEEEEECTTS----------------CEEEEETTCBHHHHHHHHCHHHH---------HTEEEEEETTEEE-CTTCBCC
T ss_pred CceEEEECCCC----------------CEEEecCCCCHHHHHHHhhhhhh---------cceEEEEECCEEc-CCCcccC
Confidence 47899999994 69999999999999999999865 5799999999999 5999999
Q ss_pred CCCEEEEeeCCC
Q 004703 688 MGDVVELTPAIP 699 (735)
Q Consensus 688 ~GDvVEIita~p 699 (735)
+||+|||+|...
T Consensus 59 ~gd~VeIit~~~ 70 (78)
T 3hvz_A 59 TGEIIDVLTTKE 70 (78)
T ss_dssp TTCBEEEEECC-
T ss_pred CCCEEEEEccCc
Confidence 999999999653
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=108.08 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCCcccC-CCCCCCCCEEEEEEcCCcceEEec-CCCCCHhHhHHhhcCCCCCCCCCCCCCcccc----ccccCCeecCCC
Q 004703 609 DCPFSYK-PQCSHDGPVFVIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDP 682 (735)
Q Consensus 609 ~~iyvfT-Pk~~~~g~vfVi~~~g~~~~v~~L-P~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v----gakVNgr~V~~l 682 (735)
+-|.||| |+|.. |+=+ +.+.| |+|+||.||||+||+++++ .|+.++ .||.|++.|+ +
T Consensus 10 ~lIrVYtk~~G~~--------pd~~--dpviL~~~GsTv~Dfa~~IH~di~~------~fkyA~VwG~saK~~~qrVg-l 72 (93)
T 2eki_A 10 KLVRIYTKPKGQL--------PDYT--SPVVLPYSRTTVEDFCMKIHKNLIK------EFKYALVWGLSVKHNPQKVG-K 72 (93)
T ss_dssp CEEEEEECCTTSC--------CCSS--SCEEEETTSCCHHHHHHHHCTTCTT------TEEEEEEBSTTSSSSSEEEC-S
T ss_pred CeEEEEeCCCCCC--------CCCC--CCEEEecCCCCHHHHHHHHHHHHHh------hccEEEEecccccCCCEECC-C
Confidence 3488999 77521 1111 57889 9999999999999999764 345555 6899999995 9
Q ss_pred CCcCCCCCEEEEeeCC
Q 004703 683 RCKLKMGDVVELTPAI 698 (735)
Q Consensus 683 ~~~Lk~GDvVEIita~ 698 (735)
+|+|++||+|+|++..
T Consensus 73 dh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 73 DHTLEDEDVIQIVKKS 88 (93)
T ss_dssp SCCCCSSEEECEEECC
T ss_pred CcEecCCCEEEEEeCC
Confidence 9999999999999853
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.80 E-value=2.3e-09 Score=89.59 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=52.0
Q ss_pred EEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCC
Q 004703 624 VFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 624 vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p 699 (735)
+.|.+|+| +.+++|+|+|+.|||+.++.+.+ +.+++|+|||+++ +++++|+.||.|||++...
T Consensus 3 i~i~~p~g---~~~~~~~g~T~~dla~~i~~~l~---------~~~vaa~vNg~lv-dl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 3 VMVFTPKG---EIKRLPQGATALDFAYSLHSDLG---------DHCIGAKVNHKLV-PLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEEECTTC---CEEEECTTCBHHHHHHHHCSHHH---------HTEEEEEETTEEC-CTTCBCCSSSBEEEEECCC
T ss_pred EEEEcCCC---CEEEcCCCCcHHHHHHHHhhccc---------cceEEEEECCEEe-CCCcCcCCCCEEEEEECCC
Confidence 34444555 58999999999999999976543 4688999999999 5999999999999999543
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.72 E-value=3.4e-09 Score=92.24 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=55.8
Q ss_pred EEEEEEcCCcceEEecCC-CCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCcc
Q 004703 624 VFVIMIENDKMSVQEFPT-SSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS 702 (735)
Q Consensus 624 vfVi~~~g~~~~v~~LP~-GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~ 702 (735)
+.|.+|+| .++++|+ |+|+.|||+.|+.+.+ +++++|||||+++ ||+++|+.|+.|||++.....+
T Consensus 12 i~I~lpdG---~~~~~~~~~~T~~dia~~i~~~l~---------~~~vaakvNg~l~-dL~~~l~~d~~ve~vt~~~~eg 78 (88)
T 1wwt_A 12 IKVTLPDG---KQVDAESWKTTPYQIACGISQGLA---------DNTVIAKVNNVVW-DLDRPLEEDCTLELLKFEDEEA 78 (88)
T ss_dssp EEEECTTS---CEEEEETTTCCHHHHHHHSSTTTG---------GGCCCEEESSSEE-CSSSCCCSSEEEEECSSCCSCC
T ss_pred EEEEECCC---CEEEcccCCCCHHHHHHHhhhccc---------cceEEEEECCEEE-CCCcCcCCCCEEEEEeCCCHHH
Confidence 33555555 5899998 9999999999987754 5789999999999 6999999999999999766544
Q ss_pred H
Q 004703 703 L 703 (735)
Q Consensus 703 l 703 (735)
+
T Consensus 79 ~ 79 (88)
T 1wwt_A 79 Q 79 (88)
T ss_dssp S
T ss_pred h
Confidence 4
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.61 E-value=9.4e-09 Score=103.98 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=69.7
Q ss_pred EEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH-
Q 004703 626 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT- 704 (735)
Q Consensus 626 Vi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~l~- 704 (735)
|.+|+| +++++|+|+|+.|||+.++++.+ +.+++|+|||+++ +++++|+.|+.|||++.....++.
T Consensus 4 I~~p~G---~~~~~~~g~T~~dia~~i~~~l~---------~~~vaakvNg~l~-dL~~~l~~~~~ve~it~~~~~g~~~ 70 (224)
T 1tke_A 4 ITLPDG---SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELV-DACDLIENDAQLSIITAKDEEGLEI 70 (224)
T ss_dssp EECTTS---CEEECSSCBCHHHHHHHHCHHHH---------HHCCEEEETTEEE-ETTCCBCSCEEEEEECTTSHHHHHH
T ss_pred EEeCCC---CEEEecCCCCHHHHHHHHhhhcc---------cceEEEEECCEEe-ccceEcCCCCeEEEEecCchhHHHH
Confidence 344445 58999999999999999987643 5789999999999 599999999999999977654442
Q ss_pred -------HHHHHHHHHH-HcccCcCCC
Q 004703 705 -------EYREEIQRMY-ERGLAVSNT 723 (735)
Q Consensus 705 -------~~r~~i~rm~-~~~~~~~~~ 723 (735)
.+..+++++| ...+++|++
T Consensus 71 ~~HS~~HlL~~A~~~~~~~~~~~~g~~ 97 (224)
T 1tke_A 71 IRHSCAHLLGHAIKQLWPHTKMAIGPV 97 (224)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEECCCCE
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEECCc
Confidence 5789999999 666777765
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.43 E-value=5.2e-08 Score=106.61 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=47.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccccc--ccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRP--RLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vga--kVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
+++.||+|+|+.||||+||+++++ .+++| ++|++.| +++|+|++||+|+|++.+
T Consensus 341 ~~~~l~~G~t~~d~a~~iH~d~~~---------~f~~a~~~~~~~~~-g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 341 HVFLMKKGSTPRDLAFKVHTDLGK---------GFLYAINARTKRRV-GEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CCEEEETTCCHHHHHHHHCHHHHH---------TEEEEEETTTCSBC-CTTCCCCTTEEEEEEEC-
T ss_pred eeEEeCCCCCHHHHHHHHhHHHHh---------hhhhhHHhcCCEEc-CCCccccCCCEEEEEeCC
Confidence 688999999999999999999763 56777 7899999 599999999999999853
No 12
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.13 E-value=0.00042 Score=57.12 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred EEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCC
Q 004703 628 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 698 (735)
Q Consensus 628 ~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l----~~~Lk~GDvVEIita~ 698 (735)
+.+| ..+++|.|+|+.|+.-.++.. ...+.+-|||++|+ . ++.|+.||.|+|++..
T Consensus 4 ~vNg---~~~~~~~~~tv~~ll~~l~~~-----------~~~v~vavN~~~v~-~~~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 4 LFND---QAMQCAAGQTVHELLEQLDQR-----------QAGAALAINQQIVP-REQWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp EESS---CEECCCTTCCHHHHHHHHTCC-----------CSSEEEEETTEEEC-HHHHTTCCCCTTEEECEEESC
T ss_pred EECC---EEEEcCCCCcHHHHHHHcCCC-----------CCCEEEEECCEECC-chhcCCcCCCCCCEEEEEeec
Confidence 4455 478999999999999988543 13456889999995 4 7899999999999864
No 13
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.11 E-value=0.00064 Score=59.70 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=45.2
Q ss_pred EEEcCCcceEEecCCC-CCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP~G-STvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
|+.+| +.+++|.| +|+.|+...++-. ...+.+-|||++||.. ++.|++||.|||++..
T Consensus 23 I~vNG---e~~el~~~~~Tv~dLL~~L~~~-----------~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 23 LQLNG---KDVKWKKDTGTIQDLLASYQLE-----------NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp EEETT---EEECCSSSCCBHHHHHHHTTCT-----------TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEEC
T ss_pred EEECC---EEEECCCCCCcHHHHHHHhCCC-----------CCCEEEEECCEECChhhcCCcCCCCCCEEEEEccc
Confidence 44555 58899998 9999999987533 1345688999999632 5899999999999854
No 14
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.10 E-value=0.00069 Score=57.63 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=42.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPD 700 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~ 700 (735)
..+++|+|+|+.|+.-.++-.. +.+.+.+||++|| .+..++ ||.|||++....
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~-----------~~VvV~vNG~~v~-~d~~l~-GD~VeIv~~V~G 65 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSP-----------HEVTVLVDGRPVP-EDQSVE-VDRVKVLRLIKG 65 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCS-----------SCCCEECCCCCCC-TTSSSC-CCCEEECSSCSC
T ss_pred eeEEcCCCCcHHHHHHHcCCCc-----------ceEEEEECCEECC-HHHCCC-CCEEEEEEeecc
Confidence 3589999999999999875431 2346899999995 888776 999999986643
No 15
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.98 E-value=0.00072 Score=57.33 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=42.0
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
+.+++ .|.|+.|+.-..+-. ...+.+-+||++||.- ++.|++||.|||++..
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~-----------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCT-----------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCC-----------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred EEEEc-CCCcHHHHHHHcCCC-----------CCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 57888 999999999987543 1346788999999632 5899999999999854
No 16
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=96.96 E-value=0.00019 Score=83.21 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=70.5
Q ss_pred EEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH-
Q 004703 626 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT- 704 (735)
Q Consensus 626 Vi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~l~- 704 (735)
|.+|+| .++++++|.|+.|+|..|+.... +.+++|+|||+++ +++++|..+..||++|.....++.
T Consensus 4 ~~~~d~---~~~~~~~~~t~~~~a~~i~~~~~---------~~~~~~~vng~~~-dl~~~l~~d~~~~~~~~~~~~~~~~ 70 (642)
T 1qf6_A 4 ITLPDG---SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELV-DACDLIENDAQLSIITAKDEEGLEI 70 (642)
T ss_dssp EECTTS---CEEECSSCBCHHHHHHHHCHHHH---------HHCSEEEETTEEE-ETTSCBCSCEECCEECTTSHHHHHH
T ss_pred EEcCCC---CeEEecCCCCHHHHHHHhchhhh---------hheEEEEECCEEe-ccccccCCCceEEEeecCcHHHHHH
Confidence 555666 58999999999999999976543 5688999999999 799999999999999977554542
Q ss_pred -------HHHHHHHHHH-HcccCcCCCC
Q 004703 705 -------EYREEIQRMY-ERGLAVSNTG 724 (735)
Q Consensus 705 -------~~r~~i~rm~-~~~~~~~~~~ 724 (735)
.+.++++++| +..+++||..
T Consensus 71 ~~HSa~HlL~~Al~~~~~~~~~~~G~~i 98 (642)
T 1qf6_A 71 IRHSCAHLLGHAIKQLWPHTKMAIGPVI 98 (642)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEECCCCEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 5799999999 7677777753
No 17
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.89 E-value=0.0013 Score=55.04 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=41.7
Q ss_pred EecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 637 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 637 ~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
+++|.|.|+.|+.-.++.. ...+.+-+||++++ .+..|+.||.|+|++..
T Consensus 18 ~~~~~~~tv~~Ll~~l~~~-----------~~~v~vavN~~~v~-~~~~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELEIP-----------IETVVVKKNGQIVI-DEEEIFDGDIIEVIRVI 67 (70)
T ss_dssp EEESSCCBHHHHHHHTTCC-----------TTTEEEEETTEECC-TTSBCCTTCEEEEEECT
T ss_pred EECCCCCcHHHHHHHhCCC-----------CCCEEEEECCEECC-CcccCCCCCEEEEEecc
Confidence 8899999999999887533 12456889999995 88999999999999854
No 18
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.88 E-value=0.00075 Score=57.98 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=45.5
Q ss_pred EEEcCCcceEEecC--CCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 004703 627 IMIENDKMSVQEFP--TSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 698 (735)
Q Consensus 627 i~~~g~~~~v~~LP--~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l---~~~Lk~GDvVEIita~ 698 (735)
|+.+| +.+++| .|.|+.|+.-..+-.- ...+.+-+||++||.- ++.|++||.|||++..
T Consensus 3 I~vNG---e~~e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 3 LTVNG---KPSTVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp EEETT---EEEECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCC
T ss_pred EEECC---EEEEcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChHHcCcccCCCCCEEEEEeee
Confidence 34555 588999 9999999999875330 1346788999999733 4899999999999854
No 19
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.83 E-value=0.00037 Score=59.28 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=42.9
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+...++.. ...+.+-|||++|+ .++.|++||.|+|++..
T Consensus 23 ~~~~~~~~~Tv~dLl~~L~~~-----------~~~v~VavNg~~v~-~~~~L~dGD~V~i~ppv 74 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAVGFN-----------TESAIAKVNGKVVL-EDDEVKDGDFVEVIPVV 74 (77)
T ss_dssp CCCCCCSSCCHHHHHHTTTCS-----------SCSSCEEETTEEEC-SSSCCCSSCCCBCSCCC
T ss_pred EEEECCCCCcHHHHHHHhCCC-----------CcCEEEEECCEECC-CCCCcCCCCEEEEEccc
Confidence 467889999999999887532 13457889999995 89999999999999854
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.80 E-value=0.0017 Score=53.23 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=41.7
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~----~~Lk~GDvVEIita~ 698 (735)
..+++ .|+|+.|+.-.++.. ...+.+-|||++|+ .+ +.|+.||.|+|++..
T Consensus 7 ~~~~~-~~~tv~~ll~~l~~~-----------~~~v~vavN~~~v~-~~~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 7 EPRPL-EGKTLKEVLEEMGVE-----------LKGVAVLLNEEAFL-GLEVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp EEECC-TTCCHHHHHHHHTBC-----------GGGEEEEETTEEEE-GGGCCCCCCCTTCEEEEEECC
T ss_pred EEEEc-CCCcHHHHHHHcCCC-----------CCcEEEEECCEECC-ccccCCcCCCCCCEEEEEeec
Confidence 57889 999999999888543 23466889999996 44 899999999999854
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.74 E-value=0.00052 Score=61.50 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=40.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
..+++|+|+|+.|+..+.|-.... .... .....+-|||++|+ +++.|+.||.|||++
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~~~~-peId---l~~~~V~Vng~~v~-~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGILSQF-PEID---LSTNKIGIFSRPIK-LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHHHHC-TTCC---TTTSEEEEEECSCC-TTCBCCTTCEEEECC
T ss_pred EEEEcCCCCcHHHHHHHcCCCccC-Cccc---ccccEEEEcCEECC-CCccCCCCCEEEEEe
Confidence 356899999999999886431000 0000 11234569999995 999999999999997
No 22
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=96.54 E-value=0.00029 Score=81.47 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=66.0
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH--------HH
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 706 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~p~~~l~--------~~ 706 (735)
.++++|.|.|+.|+|..|+.... +.+++|+|||+++ +|+++|..+..||+++.....++. .+
T Consensus 12 ~~~~~~~g~t~~~ia~~~~~~~~---------~~~v~~~vng~~~-dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL 81 (645)
T 1nyr_A 12 NKKAFDKGTTTEDIAQSISPGLR---------KKAVAGKFNGQLV-DLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLM 81 (645)
T ss_dssp CCCBCCTTCCHHHHHHTTCHHHH---------HHCCEEEETTEEE-CTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHhhhhcc---------cCeEEEEECCEEE-eCCcccCCCCeEEEeeccchhHHHHHHHHHHHHH
Confidence 57899999999999999865432 4688999999999 799999999999999977654442 57
Q ss_pred HHHHHHHH-HcccCcCCCC
Q 004703 707 REEIQRMY-ERGLAVSNTG 724 (735)
Q Consensus 707 r~~i~rm~-~~~~~~~~~~ 724 (735)
..+++++| +..+.+||..
T Consensus 82 ~~A~~~~~~~~~~~~g~~~ 100 (645)
T 1nyr_A 82 AHAIKRLYGNVKFGVGPVI 100 (645)
T ss_dssp HHHHHHHSSSCEECCCCEE
T ss_pred HHHHHHHcCCcEEEECCcc
Confidence 88999999 7777887753
No 23
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.96 E-value=0.003 Score=52.86 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=41.6
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--ccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--RPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--gakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+...++.....+ ..+ .+-|||+.++ .++.|++||.|+|++..
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~--------~~v~~~v~vNg~~v~-~~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQI--------NNKKFQVAVNEEFVQ-KSDFIQPNDTVALIPPV 74 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGG--------TTCCCEEEETTEEEC-TTSEECTTCEEEEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcch--------hcceEEEEECCEECC-CCCCcCCCCEEEEECCC
Confidence 3567899999999988774432111 123 5779999995 89999999999999853
No 24
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.16 E-value=0.018 Score=50.88 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=43.2
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCC-----CCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPY-----GFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~-----g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+...+......+... | .....+.+-|||+.++ ++++|+.||.|+|++..
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g-~~~~~v~v~VNg~~v~-~~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGY-DEDADVNIAVNGRYVS-WDEELKDGDVVGVFPPV 95 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSS-CTTSSBEEEETTBCCC-TTCBCCTTCEEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhcccc-ccCCcEEEEECCEECC-CCCCCCCCCEEEEECCC
Confidence 4678899999999987764321111100 0 0123456789999995 89999999999999853
No 25
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.013 Score=63.73 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred cCCC-CCHhHhHHhhcCCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 639 FPTS-STVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 639 LP~G-STvlDfAy~i~~~~~~~~~~g~~~~~~v----gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
+++| ||+.|||..||++..+ + |..++ .+|-+||.+ ..+|.|++||||+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~~----~--F~~a~v~Gs~~K~~~r~e-Gkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLVD----D--FRNALVYGSSVKHQPQYV-GLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGGG----G--EEEEEEESTTSSSSSEEE-CTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHH----h--hhHhhhcCcccCCCCCcc-CCCcEEcCCCEEEEEe
Confidence 4555 9999999999998653 1 34443 477888888 6999999999999985
No 26
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.88 E-value=0.022 Score=49.08 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=43.1
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCC--CC--CCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSP--YG--FPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~--~g--~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
..+++|.|+|+.|+.-.+......+.. +. -.+...+..-|||+.++ ++++|+.||.|.|+|..
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-LGEATAAGDELALFPPV 86 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-TTSBCCTTCEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-CCcccCCCCEEEEECCC
Confidence 467899999999998776432211100 00 00112356779999995 89999999999999854
No 27
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.58 E-value=0.036 Score=46.36 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=41.7
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
.+++ .|+|+.|+.-.+.... .+.. ....+..-|||+.|++.+++|+.||.|+|+|..
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~-~l~~----~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKE-GLKE----WLGVCAIALNDHLIDNLNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCT-TTTT----TTTTCEEEESSSEECCTTCCCCTTCEEEEECCB
T ss_pred EEee-CCCcHHHHHHHHHHCc-CHHH----HhhccEEEECCEEcCCCCcCCCCCCEEEEECCC
Confidence 3567 8999999988876431 1110 113456779999966789999999999999853
No 28
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.12 E-value=0.027 Score=61.04 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=41.8
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEe
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--------------gakVNg--r~V~~l~~~Lk~GDvVEIi 695 (735)
+...+++|+|+-|+|..||++..+ |+ .++. +||-.| |.+ .-+|.+++||+|++-
T Consensus 291 raw~i~~G~ta~~aAg~IH~D~~~----gF--i~Aev~~~~d~~~~~~~~~~k~~g~~r~e-gk~y~v~dgDii~f~ 360 (363)
T 1jal_A 291 RAWTVSVGATAPKAAAVIHTDFEK----GF--IRAEVIAYEDFIQFNGENGAKEAGKWRLE-GKDYIVQDGDVMHFR 360 (363)
T ss_dssp EEEEEETTCBHHHHHHTTCTTHHH----HC--CEEEEECHHHHHHTTSHHHHHHTTCCEEE-CTTCBCCTTCEEEEE
T ss_pred ceeEecCCCcHHHHHHhhHHHHHh----cc--EEEEEcCHHHHHHhCCHHHHHhcCCeecc-CCccEecCCCEEEEE
Confidence 789999999999999999999765 32 2221 255445 565 579999999999985
No 29
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.68 E-value=0.029 Score=61.58 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=44.5
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEeeCC
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--------------gakVNg--r~V~~l~~~Lk~GDvVEIita~ 698 (735)
+...+++|+|+-|+|..||+|..+ | |.++. +||-.| |.+ .-+|.+++||+|++.-..
T Consensus 317 rawti~~g~ta~~aAg~IH~D~~~----g--Fi~Aev~~~~d~~~~g~~~~~k~~g~~r~~-Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 317 RAWTIRKGTKAPQAAGKIHTDFEK----G--FIMAEVMKYEDFKEEGSENAVKAAGKYRQQ-GRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EEEEEETTCBHHHHHHTTCTHHHH----H--EEEEEEECHHHHHHHCSHHHHHHTTCCEEE-CTTCBCCTTCEEEEEEC-
T ss_pred eeEEecCCCcHHHHHhhhHHHHHh----c--ceEEEEccHHHHHHhCCHHHHHhcCccccc-CCCceeeCCCEEEEEecC
Confidence 788999999999999999999754 2 23332 456566 666 589999999999998755
Q ss_pred C
Q 004703 699 P 699 (735)
Q Consensus 699 p 699 (735)
+
T Consensus 390 ~ 390 (396)
T 2ohf_A 390 P 390 (396)
T ss_dssp -
T ss_pred C
Confidence 4
No 30
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.61 E-value=0.03 Score=60.68 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=42.1
Q ss_pred eEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEe
Q 004703 635 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 635 ~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--------------gakVNg--r~V~~l~~~Lk~GDvVEIi 695 (735)
+...+++|+|+-|+|..||++..+ | |.++. +||-.| |.+ .-+|.+++||+|++-
T Consensus 296 ~aw~i~~g~ta~~~a~~IH~d~~~----~--fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~-gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 296 RAWTVRRGTKAPRAAGEIHSDMER----G--FIRAEVIPWDKLVEAGGWARAKERGWVRLE-GKDYEVQDGDVIYVL 365 (368)
T ss_dssp EEEEEETTCBHHHHHHHHCHHHHH----S--CCEEEEEEHHHHHHHTSHHHHHHTTCCEEE-CTTCBCCTTEEEEEE
T ss_pred ceEEecCCCcHHHHHHhhHHHHHh----h--CeEEEEccHHHHHHhCCHHHHHhcCCcccc-CCCceecCCCEEEEE
Confidence 789999999999999999999765 3 22222 255456 565 579999999999985
No 31
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.45 E-value=0.086 Score=44.23 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=39.7
Q ss_pred EecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 004703 637 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 637 ~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~GDvVEIita~ 698 (735)
++ |.|+|+.|+.-.+......+..+ .. ...+.+-|||+.++ ++++|+.||.|+|++..
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~~~~~-l~-~~~~~v~vN~~~v~-~~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDRWALA-LE-DGKLLAAVNQTLVS-FDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHHHHHH-HC-CTTCEEEETTEECC-TTCBCCTTCEEEEECCC
T ss_pred Ec-CCCCCHHHHHHHHHHHChhHHHH-hc-CCCEEEEECCEECC-CCCCCCCCCEEEEeCCC
Confidence 44 78999999988875432110000 00 01245789999995 89999999999999854
No 32
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=93.28 E-value=0.077 Score=45.35 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCC------CCCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSP------YGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~------~g~~~~~~vgakVNgr~V~---~l~~~Lk~GDvVEIita~ 698 (735)
..++|.|+|+.|+.-.+......+.. -| +...+.+-|||+.++ .++++|+.||.|+|++..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g--~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNN--LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC--STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECCT
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccC--cCcceEEEECCEEccccCCCCcCCCCCCEEEEeCCC
Confidence 56789899999998776433110000 00 013456889999985 268999999999999853
No 33
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=91.43 E-value=0.55 Score=46.46 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccccc
Q 004703 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 288 (735)
Q Consensus 231 ~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDvVEDT 288 (735)
+++.++.++......+. ....-+.|.++|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666665554421 112228999999876643 467865 56899999997653
No 34
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=90.97 E-value=0.81 Score=46.22 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 004703 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDvVE 286 (735)
.++|.++.+|+.+.+.+. .+..=+.|.++|+.+... .+.|.+ +.+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 367888889988887653 223448899998765443 367755 568899999985
No 35
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=90.07 E-value=0.88 Score=45.83 Aligned_cols=56 Identities=23% Similarity=0.134 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHH----hCCCHHH-HHHHHhhcccc
Q 004703 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLD 286 (735)
Q Consensus 228 ~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~t-IaAALLHDvVE 286 (735)
.+..++.++.++......++. ...=+.|.++|+..... .+.|.++ .+||||||+..
T Consensus 7 ~~~~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 7 ITETQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCHHHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 344567777777766555321 12238899999876643 3677664 58999999985
No 36
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=89.77 E-value=0.25 Score=43.64 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=40.0
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCC----CCCCcccc-------ccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPY----GFPLKEEL-------RPRLNHKAVG---DPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~----g~~~~~~v-------gakVNgr~V~---~l~~~Lk~GDvVEIita~ 698 (735)
..+++ |+|+.|+...+......+... | .+...+ .+-|||+.|+ .++++|++||.|+|+|..
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g-~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ppv 96 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKG-DEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPV 96 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSC-CTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECCC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhccc-ccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECCC
Confidence 45677 899999987764322111000 0 011234 6789999984 478999999999999854
No 37
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=89.69 E-value=4.8 Score=39.70 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDT 284 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDv 284 (735)
++.++.++......+ .....-+.|.+.|+.+... .+.|.+ +..||||||+
T Consensus 14 l~~~~~~~v~~~~~~---~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDY---DDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTC---CCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 455666776665543 2233447899999876543 466754 5689999999
No 38
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=89.34 E-value=1.6 Score=43.69 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHH-----hCCCHH-HHHHHHhhccccc
Q 004703 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA-----IGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 231 ~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~-----lg~D~~-tIaAALLHDvVED 287 (735)
+++.++.++......++ ....-+.|.+.|+..... .+.|.+ +.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45667777777665532 222347999999876433 355654 5699999999874
No 39
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=89.23 E-value=1.2 Score=44.88 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHh----CCCHH-HHHHHHhhccccc
Q 004703 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~l----g~D~~-tIaAALLHDvVED 287 (735)
.++|.++.+|+.+.+.+. .+..=+.|.++|+.+...+ +.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 367888999998887653 2334489999998766543 56655 5588999999863
No 40
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=88.76 E-value=2.6 Score=41.83 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred CchhhHHHHHHHHHHHHh----------CCCH-HHHHHHHhhccccc--cCC-C-H----HHHHHHhCHHHHHHHHHhhc
Q 004703 252 GDPYLLHCVETAMLLAAI----------GANS-TVVAAGLLHDTLDD--AFL-S-Y----DYIFRTFGAGVADLVEGVSK 312 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa~l----------g~D~-~tIaAALLHDvVED--T~v-T-~----eeI~~~FG~eVA~LV~gVTK 312 (735)
++.-..|.++||.+..-+ ++|. .++.+|||||+.|- +++ | . .++.+.+++.=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 577789999998644322 3564 57788999999983 232 2 1 23333343322223333221
Q ss_pred ccccchhhhhccccchHHHHHHHHHHHhhc--cCceeehhhhhhhhhhc
Q 004703 313 LSQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNM 359 (735)
Q Consensus 313 l~~l~~~~r~~~~~~k~~qaE~lRkmLLAm--aD~RVvLIKLADRLhNM 359 (735)
.++. .+.+.++.+.... ..+.+.+||-||+|.-+
T Consensus 109 --~Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 --MVPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp --TSCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred --hCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1111 1123444444333 25678899999999776
No 41
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=87.10 E-value=0.43 Score=41.23 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=39.7
Q ss_pred EecCCCCCHhHhHHhhcCCCCCCCC--C-----CCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 004703 637 QEFPTSSTVMDLLERAGRGSSRWSP--Y-----GFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 698 (735)
Q Consensus 637 ~~LP~GSTvlDfAy~i~~~~~~~~~--~-----g~~~~~~vgakVNgr~V~~---l~~~Lk~GDvVEIita~ 698 (735)
++ +.|+|+.|+.-.+......+.. + | .+...+..-|||+.++. ++++|+.||.|.|+|..
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g-~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Ppv 90 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPG-KLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAV 90 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTT-SBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEECC
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCC-cccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECCC
Confidence 55 6899999998776432111000 0 0 01224567899999853 58999999999999854
No 42
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.46 E-value=0.24 Score=54.22 Aligned_cols=55 Identities=5% Similarity=-0.023 Sum_probs=40.0
Q ss_pred ceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEe
Q 004703 634 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 634 ~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~v--------------gakVNg--r~V~~l~~~Lk~GDvVEIi 695 (735)
.+...+++|+|+-|+|..||+|..+ | |.++. +||=.| |.. .-+|.+++||+|++-
T Consensus 318 ~rawti~~G~~a~~aag~IH~d~~~----g--fi~ae~~~~~d~~~~g~~~~~k~~g~~r~~-gk~y~v~dgdv~~f~ 388 (392)
T 1ni3_A 318 VRSWTIRKGTKAPQAAGVIHTDFEK----A--FVVGEIMHYQDLFDYKTENACRAAGKYLTK-GKEYVMESGDIAHWK 388 (392)
T ss_dssp EEEEEEETTCBHHHHHHHHCHHHHH----T--CSEEEEECHHHHHHHTSHHHHHHTTCSCEE-ETTCBCCTTCEEECC
T ss_pred ceeEEeCCCCcHHHHccccchhhhh----c--cEEEEECCHHHHHHcCCHHHHHHcCCcccc-CCceeeeCCCEEEEE
Confidence 3799999999999999999999765 3 22222 234223 334 468999999999874
No 43
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=81.97 E-value=1.6 Score=39.80 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=40.8
Q ss_pred EEecC---CCCCHhHhHHhhcCCCCCCCC--C---CCCCccccccccCCeec---CCCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFP---TSSTVMDLLERAGRGSSRWSP--Y---GFPLKEELRPRLNHKAV---GDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP---~GSTvlDfAy~i~~~~~~~~~--~---g~~~~~~vgakVNgr~V---~~l~~~Lk~GDvVEIita~ 698 (735)
.+++| .++|+.|+.-.+......... + | .+...+-+-||++-+ ..++++|++||.|.|+++.
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g-~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD-SVRPGILVLINDADWELLGELDYQLQDQDSILFISTL 105 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSS-SCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECS
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCC-cccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCC
Confidence 37788 447999988776443210000 0 1 123445688999844 3589999999999999854
No 44
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.81 E-value=1.9 Score=37.86 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=39.1
Q ss_pred EEecC--CCCCHhHhHHhhcCCCCC-CCC---C---CCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFP--TSSTVMDLLERAGRGSSR-WSP---Y---GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP--~GSTvlDfAy~i~~~~~~-~~~---~---g~~~~~~vgakVNgr~V~---~l~~~Lk~GDvVEIita~ 698 (735)
.+++| .|+|+.|+.-.+...... +.. + | .+...+-+-||++.+. +++++|++||.|-|+|..
T Consensus 23 ~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~-~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 23 KIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDD-SIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp EEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETT-EECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEECT
T ss_pred EEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCC-ccccCeEEEECCEEccccCCCCcCcCCCCEEEEECCC
Confidence 45778 899999988776422210 000 0 0 0111233679999652 368999999999999853
No 45
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=79.18 E-value=0.98 Score=43.87 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=40.7
Q ss_pred EEecCCCCCHhHhHHhhcCCCCCCCCC---CCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCCC
Q 004703 636 VQEFPTSSTVMDLLERAGRGSSRWSPY---GFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAIP 699 (735)
Q Consensus 636 v~~LP~GSTvlDfAy~i~~~~~~~~~~---g~~~~~~vgakVNgr~V~~l----~~~Lk~GDvVEIita~p 699 (735)
.++++. +|+.|+.-.+......+... ...+...+.+-|||+.|+ . +++|+.||.|+|++...
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~-~~~~~dt~L~dGDeVai~PpVs 85 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVR-YLQGLSTPLSPGATLDLFPPVA 85 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGG-GTTGGGCBCCTTCEEEEECSCC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECC-CcCCCccCCCCCCEEEEECccc
Confidence 567885 99999987764332111000 000012356789999996 5 89999999999998554
No 46
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=72.58 E-value=3.6 Score=42.35 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCC-HHHHHHHHhhcccc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDTLD 286 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D-~~tIaAALLHDvVE 286 (735)
-|.+|+++-.......-.....|=+.|.++.|.....-|.| .-.+.||||||+=.
T Consensus 37 ti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLGk 92 (250)
T 2ibn_A 37 TVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGK 92 (250)
T ss_dssp CHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccHh
Confidence 36667666554444433334567789999999999888998 45559999999743
No 47
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=68.43 E-value=4.8 Score=36.49 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=39.6
Q ss_pred EEecCC----CCCHhHhHHhhcCCCCCCCC--C---C-CCCccccccccCCeec---CCCCCcCCCCCEEEEeeCC
Q 004703 636 VQEFPT----SSTVMDLLERAGRGSSRWSP--Y---G-FPLKEELRPRLNHKAV---GDPRCKLKMGDVVELTPAI 698 (735)
Q Consensus 636 v~~LP~----GSTvlDfAy~i~~~~~~~~~--~---g-~~~~~~vgakVNgr~V---~~l~~~Lk~GDvVEIita~ 698 (735)
.+++|. ++|+.|+...+......... + | -.+...+-+-|||+-+ ..++++|++||+|.|+++.
T Consensus 24 ~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fistl 99 (110)
T 2k9x_A 24 SLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTL 99 (110)
T ss_dssp EECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEECC
T ss_pred EEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCCC
Confidence 567884 46999988776443211000 0 0 0012234477999876 2478999999999999844
No 48
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=59.65 E-value=6.9 Score=35.11 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=35.9
Q ss_pred EecCCCCCHhHhHHhh---cCCCCCCCCCCCCCccccc-------------cccCCeecCC--CCCcCCCCCEEEEe
Q 004703 637 QEFPTSSTVMDLLERA---GRGSSRWSPYGFPLKEELR-------------PRLNHKAVGD--PRCKLKMGDVVELT 695 (735)
Q Consensus 637 ~~LP~GSTvlDfAy~i---~~~~~~~~~~g~~~~~~vg-------------akVNgr~V~~--l~~~Lk~GDvVEIi 695 (735)
+. |+|+|++|+.-+. ....+.+|+ |-..|. -.+||++... -+++|++||.|++.
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~----fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGL----FITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSC----EEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccc----eEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 55 9999999998764 333333332 333332 2479998631 27999999999985
No 49
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=58.75 E-value=7.4 Score=37.86 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 004703 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 254 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 287 (735)
..+.|.+.||.+.. .+|+|.+ ...||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 35689999987543 4678754 5689999998553
No 50
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=54.60 E-value=9.6 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 004703 255 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 255 YI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 287 (735)
.+.|.+.||.+.. .+|+|.+ ...||||||+=.-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 4789999987543 4678754 5689999998553
No 51
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=54.52 E-value=7.2 Score=33.37 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.+ ..++.|+.||+|+|.
T Consensus 27 ~V~VNg~~~-~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCA-KASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEEC-CTTCBCCTTCEEEEC
T ss_pred cEEECCEEc-CCCCCcCCCCEEEEE
Confidence 478999998 589999999999985
No 52
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=54.37 E-value=9.8 Score=36.63 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 004703 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 254 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 287 (735)
..+.|.+.||.+.. .+|+|.+ ...||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 35689999987543 4678754 5689999998553
No 53
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=52.80 E-value=25 Score=35.10 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred CchhhHHHHHHHHHHHHh---CCCH-HHHHHHHhhccccc--cCCCHHHHHHHhCHHHH-----HHHHHhhcccccchhh
Q 004703 252 GDPYLLHCVETAMLLAAI---GANS-TVVAAGLLHDTLDD--AFLSYDYIFRTFGAGVA-----DLVEGVSKLSQLSKLA 320 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa~l---g~D~-~tIaAALLHDvVED--T~vT~eeI~~~FG~eVA-----~LV~gVTKl~~l~~~~ 320 (735)
.+.--.|-+.||.+..-+ ++|. .++..||+||+.|- +++|.- +..+.+.- ..++.+. ..++
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~---k~~~~~~k~~~E~~A~~~l~--~~LP--- 114 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPA---DNIPKEEKHRREEEAMKQIT--QLLP--- 114 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGG---GCCCHHHHHHHHHHHHHHHH--TTSC---
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccc---cccchhhhHHHHHHHHHHHH--HhCC---
Confidence 366778999998765543 3664 68889999999994 345431 00111100 1111111 1111
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCceeehhhhhhhhhhcc
Q 004703 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (735)
Q Consensus 321 r~~~~~~k~~qaE~lRkmLLAm---aD~RVvLIKLADRLhNMR 360 (735)
..+.+.++.++..+ ..+.+.+||-||+|.-+-
T Consensus 115 --------~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 115 --------EDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11234555555443 367899999999998764
No 54
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=51.33 E-value=10 Score=41.18 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 004703 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (735)
Q Consensus 254 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 286 (735)
.-++|.++||.+.. .+|++++ +-+||||||+=-
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh 112 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGH 112 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 34789999997654 5788865 458899999863
No 55
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=49.99 E-value=13 Score=35.86 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHH---HH------hCCCHH-HHHHHHhhccccc
Q 004703 253 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~IL---a~------lg~D~~-tIaAALLHDvVED 287 (735)
+.-..|-+.||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 55678999988655 43 357766 6889999999874
No 56
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=44.67 E-value=8.4 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.9
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.+....++++.||+|+|-
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEET
T ss_pred EEEECCEEecCCCCCCCCCCEEEEC
Confidence 4789999875578999999998873
No 57
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=43.86 E-value=29 Score=34.51 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhc--CCcccc-------CchhhHHHHHHHHHH---HHh---CCCH-HHHHHHHhhccccc
Q 004703 232 FVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLL---AAI---GANS-TVVAAGLLHDTLDD 287 (735)
Q Consensus 232 ll~kA~~~A~~aH~--GQ~Rks-------GePYI~Hpl~VA~IL---a~l---g~D~-~tIaAALLHDvVED 287 (735)
.+.+-+.|...+++ .++|.+ .+.--.|-..||.+. ++. ++|. .++..||+||+.|-
T Consensus 9 ~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~ 80 (200)
T 3kh1_A 9 RLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEI 80 (200)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHH
Confidence 45555566555433 233321 255678999998763 332 3674 68889999999994
No 58
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=42.33 E-value=20 Score=35.93 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.5
Q ss_pred CchhhHHHHHHHHHHHHh--CCCHHHHHHHHhhccccc
Q 004703 252 GDPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 287 (735)
Q Consensus 252 GePYI~Hpl~VA~ILa~l--g~D~~tIaAALLHDvVED 287 (735)
-+.--.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 53 ~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 53 AFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 355678999999876543 467889999999999994
No 59
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=39.43 E-value=12 Score=34.47 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.4
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
+..|||+.|. -.++|++||+|.|=
T Consensus 91 gt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECC-SCEEECTTCEEEET
T ss_pred CEEECCEEcC-CcEECCCCCEEEEC
Confidence 5789999994 56899999999874
No 60
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=39.15 E-value=19 Score=38.98 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHHH----HhCCCH--HHHHHHHhhccccc
Q 004703 253 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~ILa----~lg~D~--~tIaAALLHDvVED 287 (735)
...+.|.+.||.+.. .++.|. ...+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 446899999987553 467775 47799999998663
No 61
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=38.89 E-value=16 Score=33.89 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
.++|||+.+ ..++.|+.||+|+|.
T Consensus 35 ~V~VNG~~v-k~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRS-KPSKIVELNATLTLR 58 (133)
T ss_dssp CEEETTEEC-CTTCBCCTTCEEEEE
T ss_pred cEEECCEEc-CCCCEeCCCCEEEEE
Confidence 368999998 589999999999986
No 62
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=36.56 E-value=46 Score=36.30 Aligned_cols=193 Identities=10% Similarity=0.140 Sum_probs=109.2
Q ss_pred CCHHHHHHHHhhccccccC---CCHHHHHH---HhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHh---h
Q 004703 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (735)
Q Consensus 271 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLL---A 341 (735)
.|+.+++|--|..++.... ++.+|++. ...++-..||+.+.+.-.+.. -.+-||++|- +
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~~------------i~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQR------------ISEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHHH------------HHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHHH------------HHHHHHHHHhCCCC
Confidence 4888888888888887643 56666443 334444556666643222221 1344566552 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhhh
Q 004703 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 421 (735)
Q Consensus 342 maD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~~ 421 (735)
+.|.|.++=-|||.-..-+....+.+.-|+++++..-.-|++- +.|-+..+-.++|++-...+.+..--. .-.|.-..
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si~~t~~g~-~laL~P~~ 318 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGIRQTSGGS-FLNMDIEV 318 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTEECC-------CCEECC
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHhcccCCCC-ccCCCHHH
Confidence 3488888888888877666666677777888888765555554 556677888899987666554321100 00011111
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcCC------CCCccccceEEEEE
Q 004703 422 DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (735)
Q Consensus 422 re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~giRII 480 (735)
-+.+++.+.+.+++ ....|....-+..- .+-...+|+.++.. ++.||.+=.-++++
T Consensus 319 ~~~l~~~l~~~~~~-~~~~g~~pVLLts~--~iR~~lrrlle~~~p~l~VLS~~EI~~~~~i~~v 380 (383)
T 4a5p_A 319 SDEVMETLAHALRE-LRNAXXNFVLLVSV--DIRRFVXRLIDNRFXSILVISYAEIDEAYTINVL 380 (383)
T ss_dssp CHHHHHHHHHHHHH-HHSSSCCCEEEECT--TTHHHHHHHHHTTCSSSCEEETTSCCSSCEEEEE
T ss_pred HHHHHHHHHHHHHH-HHhccCCeEEEcCH--HHHHHHHHHHHHhcCCceEEeHHHcCCCCceEEE
Confidence 22334444444443 22234433223222 13346677777653 47888887777765
No 63
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=36.21 E-value=15 Score=34.67 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.4
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
|..|||+.|. -.+.|++||+|.|=
T Consensus 111 gt~VNG~~i~-~~~~L~~GD~I~~G 134 (154)
T 4ejq_A 111 DTYVNGKKVT-EPSILRSGNRIIMG 134 (154)
T ss_dssp CEEETTEECC-SCEECCTTCEEEET
T ss_pred ceEECCEEcC-CceECCCCCEEEEC
Confidence 6789999984 56899999999884
No 64
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=32.45 E-value=48 Score=34.76 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCC-HHHHHHHHhhcc
Q 004703 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (735)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D-~~tIaAALLHDv 284 (735)
-|.+|+++-.......-.....|=|.|+++.|+....-+-+ .=...+||+||.
T Consensus 76 tIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 76 TIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp CHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred cHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 46777777655555544446688899999999999987877 446678999997
No 65
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=31.11 E-value=26 Score=33.46 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
.++|||+.|..+++.++.||+|+|-.
T Consensus 77 ~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 77 HILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp CEEETTEECCCSSCBCCTTCEEEECG
T ss_pred CEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 36899999844799999999999864
No 66
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=30.73 E-value=19 Score=32.36 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=20.4
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
|..|||+.|. -.++|++||+|.|=.
T Consensus 81 gt~vNg~~i~-~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 81 ETYVDGQRIS-ETTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEETSCBCS-SCEEECTTCEEEETT
T ss_pred CEEECCEEcC-CCEECCCCCEEEECC
Confidence 6789999984 456999999998853
No 67
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=30.54 E-value=17 Score=31.74 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.8
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
|..|||+.+. ....|++||+|.|=
T Consensus 70 Gt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 70 GVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp CCEETTEECS-SEEECCTTCCEEET
T ss_pred CeEECCEECC-CCeECCCCCEEEEC
Confidence 6789999885 45799999999874
No 68
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=29.91 E-value=22 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
|..|||+.+. .++|++||+|.|=
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEET
T ss_pred CEEECCEECc--eEECCCCCEEEEC
Confidence 6789999984 6899999999873
No 69
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=29.20 E-value=98 Score=35.11 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=45.9
Q ss_pred EEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCC--CC-C-Ccccc--ccccCCe-ecCCCCCcCCCCCEEEEeeCCC
Q 004703 627 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPY--GF-P-LKEEL--RPRLNHK-AVGDPRCKLKMGDVVELTPAIP 699 (735)
Q Consensus 627 i~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~--g~-~-~~~~v--gakVNgr-~V~~l~~~Lk~GDvVEIita~p 699 (735)
|+++| ..+++|+|.|++|.|.++|-.+.. .+| +. + ...|- .+.|||+ ++..=.+++..|.+|+ |..
T Consensus 4 ~~ing---~~v~v~~g~tiL~a~~~~gi~ip~-lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~--T~~- 76 (574)
T 3c8y_A 4 IIING---VQFNTDEDTTILKFARDNNIDISA-LCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN--TNS- 76 (574)
T ss_dssp EEETT---EEEEECCCCBHHHHHHHTTCCCCC-SSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE--SSC-
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCCCCc-ccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE--ecc-
Confidence 45555 578899999999999998654321 111 00 0 00111 2568898 5532256777777665 322
Q ss_pred CccHHHHHHHHHHHH
Q 004703 700 DKSLTEYREEIQRMY 714 (735)
Q Consensus 700 ~~~l~~~r~~i~rm~ 714 (735)
.-....|..+++++
T Consensus 77 -~~~~~~r~~~lell 90 (574)
T 3c8y_A 77 -DAVNEKIKSRISQL 90 (574)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hhhhhhHHHHHHHH
Confidence 22445666666666
No 70
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=27.20 E-value=31 Score=34.43 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.4
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 004703 672 PRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 672 akVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
++|||+.|..+++.++.||+|+|-.
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcCcCCCCEEEEcC
Confidence 6899999844799999999999964
No 71
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=27.14 E-value=90 Score=26.01 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=39.0
Q ss_pred EEEEEEcCCcceEEe-cCCCCCHhHhHHhhcCCCCCCCCCCCCCcccccccc-----CCeecCCCCCcCCCCCEEEEeeC
Q 004703 624 VFVIMIENDKMSVQE-FPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRL-----NHKAVGDPRCKLKMGDVVELTPA 697 (735)
Q Consensus 624 vfVi~~~g~~~~v~~-LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakV-----Ngr~V~~l~~~Lk~GDvVEIita 697 (735)
|+|-+++|. .+++ |+..+|+.|+...|....+. ......+......|. +++.+ -++.|++|++|-+...
T Consensus 3 i~vr~~~G~--~~v~~l~~~~Tv~~Lk~~I~~~~gi-~~~~qrL~~~~p~k~l~l~~~~~tL--~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 3 VRCKAKGGT--HLLQGLSSRTRLRELQGQIAAITGI-APGSQRILVGYPPECLDLSDRDITL--GDLPIQSGDMLIVEED 77 (86)
T ss_dssp EEEEETTEE--EEECSCCTTCBHHHHHHHHHHHTCC-CTTTCCCEESSCCCCCCCCCSSCBT--TTSSCCTTCEEECCCC
T ss_pred EEEEcCCCC--EEeeecCCCCCHHHHHHHHHHHhCC-CccceEEEeCCCCcccccCCCCCCH--HHcCCCCCCEEEEEeC
Confidence 556666664 4677 99999999999888543221 100000000000111 34444 2678999999877753
No 72
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=27.13 E-value=29 Score=31.90 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=18.8
Q ss_pred ccccCCeecCCCC--CcCCCCCEEEE
Q 004703 671 RPRLNHKAVGDPR--CKLKMGDVVEL 694 (735)
Q Consensus 671 gakVNgr~V~~l~--~~Lk~GDvVEI 694 (735)
|..|||+.|+ .. ++|++||+|.|
T Consensus 95 GT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECC-TTCCEECCTTCEEEE
T ss_pred ceEECCEECC-CCceeECCCCCEEEE
Confidence 6789999885 33 57999999987
No 73
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=26.84 E-value=51 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHH---HHH------hCCCHH-HHHHHHhhccccc
Q 004703 253 DPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~I---La~------lg~D~~-tIaAALLHDvVED 287 (735)
+.-..|-+.||.+ |+. -++|.+ ++..||+||+.|-
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~ 80 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEA 80 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHh
Confidence 5567899998874 454 367875 7889999999984
No 74
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=26.24 E-value=36 Score=30.03 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred ccccCCeecCC-CCCcCCCCCEEEEeeC
Q 004703 671 RPRLNHKAVGD-PRCKLKMGDVVELTPA 697 (735)
Q Consensus 671 gakVNgr~V~~-l~~~Lk~GDvVEIita 697 (735)
|..|||+.+.+ -.+.|++||+|.|-..
T Consensus 69 Gt~vng~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 69 GTVINKLKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCCCCSSCCCCCTTCEEEEECC
T ss_pred CcEECCEEcCCCCcEECCCCCEEEEecc
Confidence 56799998742 1589999999999864
No 75
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.22 E-value=26 Score=38.46 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHH----hC-----CC----HHHHHHHHhhccc
Q 004703 254 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTL 285 (735)
Q Consensus 254 PYI~Hpl~VA~ILa~----lg-----~D----~~tIaAALLHDvV 285 (735)
.-+.|.++|+.+... ++ ++ ..+.+||||||+=
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 458999999876643 33 23 3467999999984
No 76
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=25.86 E-value=1e+02 Score=29.91 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHH---HHH-hCCCH----HHHHHHHhhccccc
Q 004703 253 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLDD 287 (735)
Q Consensus 253 ePYI~Hpl~VA~I---La~-lg~D~----~tIaAALLHDvVED 287 (735)
+.--.|-..||.+ |+. .++|. .++..||+||+.|-
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~ 79 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEA 79 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHh
Confidence 5567899999876 665 36676 46778999999984
No 77
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=25.20 E-value=38 Score=33.67 Aligned_cols=38 Identities=37% Similarity=0.426 Sum_probs=32.1
Q ss_pred HHHHHHHhCC---CHHHHHHHHhhccccccCCCHHHHHHHhCHHH
Q 004703 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (735)
Q Consensus 262 VA~ILa~lg~---D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (735)
|+.+|+++|. |.|.++ |++++......++|.+.||+++
T Consensus 25 v~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 25 VADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 4678888885 788877 8999988889999999999885
No 78
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.36 E-value=32 Score=34.29 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.4
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 004703 672 PRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 672 akVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
++|||+.|..+++.++.||+|+|-.
T Consensus 116 V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 116 ILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp EEETTEECCCTTCBCCTTEEEEECS
T ss_pred EEeCCEEEeecceecCCCCEEEEcc
Confidence 6899999855799999999999864
No 79
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=24.31 E-value=24 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.9
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
|..|||+.|. .+.|++||+|.|=
T Consensus 83 GT~vNg~~i~--~~~L~~GD~I~iG 105 (131)
T 3hx1_A 83 GLMINGKKVQ--EHIIQTGDEIVMG 105 (131)
T ss_dssp CEEETTEEES--EEECCTTCEEECS
T ss_pred ceEECCEEeE--eEECCCCCEEEEC
Confidence 6789999985 4999999999875
No 80
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=23.88 E-value=61 Score=35.42 Aligned_cols=183 Identities=15% Similarity=0.225 Sum_probs=102.5
Q ss_pred CHHHHHHHHhhccccccC---CCHHHHHH---HhCHHHHHHHHHhh-cccccchhhhhccccchHHHHHHHHHHHh---h
Q 004703 272 NSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (735)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVT-Kl~~l~~~~r~~~~~~k~~qaE~lRkmLL---A 341 (735)
|+.+++|.-|..++.... ++.+|++. ...++--.||+.+. +.-.+.. -.+-|+++|- +
T Consensus 180 d~~tViaTHLsevi~~~a~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~l~l~~------------i~~VLq~LL~E~Vs 247 (389)
T 3a5i_A 180 EASTVVATHLNHLIGQFSAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTT------------LHKVLQNLLAEKVP 247 (389)
T ss_dssp EHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHTTCHHHHHTTTTTTSCHHH------------HHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhccCCcCHHH------------HHHHHHHHHhCCCC
Confidence 677777776666666532 55555443 34445556666663 3222221 2345566553 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh-
Q 004703 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC- 420 (735)
Q Consensus 342 maD~RVvLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~- 420 (735)
+.|.|.++=-|||--..-+....+.+.-|.++++..-.-|++-.+.|-+..+-.++|++-.. .+++.
T Consensus 248 IRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l~~------------si~qt~ 315 (389)
T 3a5i_A 248 IRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQ------------ALQGGG 315 (389)
T ss_dssp CCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHHSCTTCCEECBCCCTTHHHHHHH------------HHHSSS
T ss_pred cccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCHHHHHHHHH------------HhcccC
Confidence 34888888889998877776666777788888887666666555567777777777765433 22211
Q ss_pred -hhhhhHHHHHHHHHHHHH---hcCCceecccccccChHHHHHHHhhcCC------CCCccccceEEEEE
Q 004703 421 -FDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (735)
Q Consensus 421 -~re~~i~~v~~~L~~~L~---~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~giRII 480 (735)
..-...+.+++.+++.++ ..|....-+. .-.+-...+|+.++.. ++.||.+=.-++++
T Consensus 316 GL~P~~~~~l~~~l~~~~~~~~~~g~~pVLL~--s~~iR~~lr~lle~~~p~l~VLS~~EI~~~~~I~~v 383 (389)
T 3a5i_A 316 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV--NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 383 (389)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEE--CTTTHHHHHHHHTTTCTTCEEEETTTSCTTCCEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--CHHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEEE
Confidence 111222333333333332 2344322233 2233456777777653 46888776666543
No 81
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=23.87 E-value=31 Score=38.77 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHh----C------------CCH----HHHHHHHhhccc
Q 004703 255 YLLHCVETAMLLAAI----G------------ANS----TVVAAGLLHDTL 285 (735)
Q Consensus 255 YI~Hpl~VA~ILa~l----g------------~D~----~tIaAALLHDvV 285 (735)
=++|.++|+.+...+ + .+. .+.+||||||+=
T Consensus 87 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 87 RFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 389999998765422 1 222 256999999984
No 82
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=23.32 E-value=20 Score=35.98 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.6
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 004703 671 RPRLNHKAVGDPRCKLKMGDVVELTP 696 (735)
Q Consensus 671 gakVNgr~V~~l~~~Lk~GDvVEIit 696 (735)
.++|||+.|..+++.++.||+|+|-.
T Consensus 121 ~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 121 AIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp CCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred CEEECCEEEccCCcCcCCCCEEEecC
Confidence 36899999844799999999998864
No 83
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=23.09 E-value=27 Score=31.20 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=18.9
Q ss_pred cccCCeecC-CCCCcCCCCCEEEEee
Q 004703 672 PRLNHKAVG-DPRCKLKMGDVVELTP 696 (735)
Q Consensus 672 akVNgr~V~-~l~~~Lk~GDvVEIit 696 (735)
..+||+.+. +..++|++||+++|+.
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEET
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEcc
Confidence 456777662 2359999999999986
No 84
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=22.87 E-value=44 Score=33.90 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHh----CCCH-HHHHHHHhhccccc
Q 004703 256 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 287 (735)
Q Consensus 256 I~Hpl~VA~ILa~l----g~D~-~tIaAALLHDvVED 287 (735)
+.|.++|+.....+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999998876654 4454 46789999999764
No 85
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=22.72 E-value=68 Score=33.62 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred cCchhh-HHHHHHHHHHH----HhCCCHH-----HHHHHHhhccc
Q 004703 251 SGDPYL-LHCVETAMLLA----AIGANST-----VVAAGLLHDTL 285 (735)
Q Consensus 251 sGePYI-~Hpl~VA~ILa----~lg~D~~-----tIaAALLHDvV 285 (735)
...+|. .|.+.||.+.. .+|++.+ ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445555 69999987554 4677642 44699999984
No 86
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=22.25 E-value=14 Score=26.47 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhHhhhhhccccccC
Q 004703 158 NGFVRNALGSCVDYD 172 (735)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (735)
.|||||.-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 699999999998543
No 87
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=21.44 E-value=37 Score=38.61 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHh-----------CCCH----HHHHHHHhhccc
Q 004703 255 YLLHCVETAMLLAAI-----------GANS----TVVAAGLLHDTL 285 (735)
Q Consensus 255 YI~Hpl~VA~ILa~l-----------g~D~----~tIaAALLHDvV 285 (735)
=++|.++|+.+...+ +.+. .+.+||||||+=
T Consensus 66 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 66 RFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 389999998765432 1232 256899999984
No 88
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=21.16 E-value=41 Score=32.86 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.5
Q ss_pred cccCCeecCCCCCcCCCCCEEEEe
Q 004703 672 PRLNHKAVGDPRCKLKMGDVVELT 695 (735)
Q Consensus 672 akVNgr~V~~l~~~Lk~GDvVEIi 695 (735)
..|||+.|. -.+.|++||+|-+=
T Consensus 142 t~VNG~~I~-~~~~L~~GDrI~lG 164 (184)
T 4egx_A 142 TYVNGKKVT-EPSILRSGNRIIMG 164 (184)
T ss_dssp EEETTEECC-SCEECCTTCEEEET
T ss_pred EEEcCEEcc-ccEEcCCCCEEEEC
Confidence 569999994 67999999999764
No 89
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.87 E-value=42 Score=33.45 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred HHHHhhhhhccCcc--hhhHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCc----e--ecccc----cccChHHHHHHH
Q 004703 395 VQLENLCFKHLNPD--QHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS----F--LVLCG----RHKSLYSIHCKM 461 (735)
Q Consensus 395 ~ELEDLaFryL~P~--~Y~~i~~~L~~~~-re~~i~~v~~~L~~~L~~~gI~----~--~~V~g----R~Ks~ySI~~Km 461 (735)
.++.+.|++||--. .-.+|.++|.... .++.|+.+++.|.+ .|.- | ..|.. +-+.+.-|.++|
T Consensus 61 ~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~----~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL 136 (221)
T 3d5l_A 61 AKAYSRMLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRG----QQLIDDHAYAASYVRTMINTDLKGPGIIRQHL 136 (221)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34556677776533 4467778887653 45556666665543 3321 0 01333 457888999999
Q ss_pred hhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCC
Q 004703 462 LKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (735)
Q Consensus 462 ~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pi 501 (735)
.+||.+-+.|...+.- ++..+....+..++.+.|.+.
T Consensus 137 ~~KGI~~~~I~~al~~---~~~~~e~e~a~~l~~Kk~~~~ 173 (221)
T 3d5l_A 137 RQKGIGESDIDDALTQ---FTPEVQAELAKKLALKLFRRY 173 (221)
T ss_dssp HHTTCCHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhc
Confidence 9999985444322210 123445566778888887654
No 90
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.51 E-value=33 Score=30.44 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.5
Q ss_pred ccccCCeecCCC--CCcCCCCCEEEEe
Q 004703 671 RPRLNHKAVGDP--RCKLKMGDVVELT 695 (735)
Q Consensus 671 gakVNgr~V~~l--~~~Lk~GDvVEIi 695 (735)
|..|||+.+. . .+.|++||+|.|=
T Consensus 77 GT~vng~~l~-~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 77 GTLLNSNALD-PETSVNLGDGDVIKLG 102 (118)
T ss_dssp CCEESSSBCC-TTCEEECCTTEEEEET
T ss_pred CeEECCEECC-CCCeEEcCCCCEEEEC
Confidence 6789999874 3 5889999999874
Done!